Query 020739
Match_columns 322
No_of_seqs 226 out of 1308
Neff 5.9
Searched_HMMs 13730
Date Mon Mar 25 07:29:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020739.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020739hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2axtt1 f.23.34.1 (T:1-30) Pho 8.0 1.2E+02 0.0085 16.8 2.1 20 114-133 8-27 (30)
2 d1vf5c3 f.23.23.1 (C:250-286) 6.4 1.8E+02 0.013 17.1 2.6 17 189-205 18-34 (37)
3 d1rzhh2 f.23.10.1 (H:11-35) Ph 5.4 1.8E+02 0.013 15.7 1.9 10 93-102 4-13 (26)
4 d1rkla_ f.23.30.1 (A:) Oligosa 3.5 1.4E+02 0.0099 17.3 0.4 19 235-253 8-26 (36)
5 d1pv7a_ f.38.1.2 (A:) Lactose 3.4 3.5E+02 0.025 20.8 3.2 6 116-121 45-50 (417)
6 d1v54c_ f.25.1.1 (C:) Mitochon 3.1 1E+03 0.074 18.6 7.0 74 66-139 52-156 (259)
7 d1xmea1 f.24.1.1 (A:14-562) Ba 2.6 1.3E+03 0.094 20.3 6.9 49 51-99 134-182 (549)
8 d1oedb_ f.36.1.1 (B:) Acetylch 2.6 8.6E+02 0.063 18.2 5.0 24 115-138 10-33 (250)
9 d1ku5a_ a.22.1.2 (A:) Archaeal 2.5 6.8E+02 0.049 15.3 4.2 18 66-83 4-21 (66)
10 d1rh5b_ f.23.28.1 (B:) Preprot 2.5 5.8E+02 0.042 16.0 2.8 24 11-66 29-52 (56)
No 1
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.98 E-value=1.2e+02 Score=16.84 Aligned_cols=20 Identities=25% Similarity=0.735 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHhcc
Q 020739 114 NAFGCVIETIYLALYITFAP 133 (322)
Q Consensus 114 N~~G~vl~~~yl~vy~~y~~ 133 (322)
-.+.|++++++..+|++-.|
T Consensus 8 ~ifac~i~lfffaiffrepp 27 (30)
T d2axtt1 8 FIFACIIALFFFAIFFREPP 27 (30)
T ss_dssp HHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHhcCCC
Confidence 34667777777766665433
No 2
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=6.40 E-value=1.8e+02 Score=17.15 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=11.1
Q ss_pred hhhhhhhhccCcccccc
Q 020739 189 LSIMRLVVRTKSVEFMP 205 (322)
Q Consensus 189 L~~i~~ViktKs~~~mp 205 (322)
+.++--|+|+|-.|-..
T Consensus 18 laQi~lVlKKKQ~EkVQ 34 (37)
T d1vf5c3 18 LAQLMLILKKKQVEKVQ 34 (37)
T ss_dssp HHHHHHHHHTGGGCTTG
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56666777777766543
No 3
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=5.40 E-value=1.8e+02 Score=15.71 Aligned_cols=10 Identities=10% Similarity=0.514 Sum_probs=5.3
Q ss_pred HHHHHHHHhh
Q 020739 93 SAMLWIYYAM 102 (322)
Q Consensus 93 n~~lWl~YG~ 102 (322)
+...|+.|++
T Consensus 4 slaiw~fw~f 13 (26)
T d1rzhh2 4 SLAIYSFWIF 13 (26)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4455666553
No 4
>d1rkla_ f.23.30.1 (A:) Oligosaccharyltransferase subunit ost4p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.46 E-value=1.4e+02 Score=17.32 Aligned_cols=19 Identities=47% Similarity=0.812 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHhhheeEEe
Q 020739 235 NVLGFIFGVVQMILYAIYR 253 (322)
Q Consensus 235 N~iG~~l~~~ql~ly~iY~ 253 (322)
|.+.+.+|+.-+.+..+|.
T Consensus 8 n~~~i~fgi~mmtliviyh 26 (36)
T d1rkla_ 8 NSLAITFGIVMMTLIVIYH 26 (36)
T ss_dssp GHHHHHHHHHHHHHHHHHH
T ss_pred CcEEeehhHHHHHHHHHHh
Confidence 8889999999999988885
No 5
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.38 E-value=3.5e+02 Score=20.81 Aligned_cols=6 Identities=17% Similarity=0.412 Sum_probs=2.4
Q ss_pred HHHHHH
Q 020739 116 FGCVIE 121 (322)
Q Consensus 116 ~G~vl~ 121 (322)
+|.+.+
T Consensus 45 ~g~i~s 50 (417)
T d1pv7a_ 45 TGIIFA 50 (417)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344433
No 6
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.12 E-value=1e+03 Score=18.65 Aligned_cols=74 Identities=9% Similarity=0.217 Sum_probs=38.1
Q ss_pred cHHHHHHHHHhcCCCCccc-----------hhHHH---HHHHHHHHHHHhhhc-----------------cCceeeeehh
Q 020739 66 PMPTFYRVCKKKSTEGFQS-----------LPYVV---ALFSAMLWIYYAMMK-----------------KDAFLLITIN 114 (322)
Q Consensus 66 Plp~~~~I~K~Kst~~~s~-----------~P~v~---~l~n~~lWl~YG~l~-----------------~d~~~vi~~N 114 (322)
-..=.|++.|+..-++... ..|++ +++.+..|..+-.-. .|+..+...|
T Consensus 52 ~~~W~rdvi~E~~~~G~ht~~v~~~~~~G~~lFi~SEv~~F~~~F~ay~~~~~~~~~~~g~~~pp~~i~~~~~~~lplln 131 (259)
T d1v54c_ 52 MYQWWRDVIRESTFQGHHTPAVQKGLRYGMILFIISEVLFFTGFFWAFYHSSLAPTPELGGCWPPTGIHPLNPLEVPLLN 131 (259)
T ss_dssp HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCGGGTSSSSCTTCCCCCTTSHHHHH
T ss_pred HHHHHHHHhhccccCCCccHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCCcCCCCCccccchhhhHHHH
Confidence 3345678888776444322 12332 567777787654321 1111234567
Q ss_pred hHHHHHHHHHHHHHHHhccchhhHH
Q 020739 115 AFGCVIETIYLALYITFAPKQARLY 139 (322)
Q Consensus 115 ~~G~vl~~~yl~vy~~y~~~k~r~~ 139 (322)
.+=++.+.+.+..-....++++|+.
T Consensus 132 T~vLl~Ss~t~~~A~~~~~~~~~~~ 156 (259)
T d1v54c_ 132 TSVLLASGVSITWAHHSLMEGDRKH 156 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTBHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchh
Confidence 7766666665554444434444433
No 7
>d1xmea1 f.24.1.1 (A:14-562) Bacterial ba3 type cytochrome c oxidase subunit I {Thermus thermophilus [TaxId: 274]}
Probab=2.64 E-value=1.3e+03 Score=20.30 Aligned_cols=49 Identities=14% Similarity=0.152 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHH
Q 020739 51 VTIIGNIVSFIVFLAPMPTFYRVCKKKSTEGFQSLPYVVALFSAMLWIY 99 (322)
Q Consensus 51 vgilG~i~si~~flSPlp~~~~I~K~Kst~~~s~~P~v~~l~n~~lWl~ 99 (322)
+|..-.+++......-+-++.+.+|++.+..-.|+.....+..+.+|+.
T Consensus 134 ig~~l~vv~~~~~i~~~~t~~~~r~~~~~~~~~Pl~~~~~~~~~~l~~~ 182 (549)
T d1xmea1 134 LGASVFVLSTWVSIYIVLDLWRRWKAANPGKVTPLVTYMAVVFWLMWFL 182 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSTTCCCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHH
Confidence 3333333333334444667777778887777666766666666666543
No 8
>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=2.62 E-value=8.6e+02 Score=18.23 Aligned_cols=24 Identities=4% Similarity=0.068 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHHHHhccchhhH
Q 020739 115 AFGCVIETIYLALYITFAPKQARL 138 (322)
Q Consensus 115 ~~G~vl~~~yl~vy~~y~~~k~r~ 138 (322)
..++++.+.-++.||.=.....|.
T Consensus 10 ~P~~~i~~l~~~~f~~p~~~~er~ 33 (250)
T d1oedb_ 10 IPCILISILAILVFYLPPDAGEKM 33 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHheecCCCCCcE
Confidence 345666666666777654444443
No 9
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}
Probab=2.54 E-value=6.8e+02 Score=15.27 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=13.1
Q ss_pred cHHHHHHHHHhcCCCCcc
Q 020739 66 PMPTFYRVCKKKSTEGFQ 83 (322)
Q Consensus 66 Plp~~~~I~K~Kst~~~s 83 (322)
|...++||.|+.....++
T Consensus 4 P~a~I~rI~k~~~~~ris 21 (66)
T d1ku5a_ 4 PIAPVDRLIRKAGAERVS 21 (66)
T ss_dssp CHHHHHHHHHHTTCSEEC
T ss_pred CHHHHHHHHHhCcccccH
Confidence 788899999976554444
No 10
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=2.45 E-value=5.8e+02 Score=16.04 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=0.0
Q ss_pred hhhhhhhhhhhhhhcchhhHHHhhhhhheeeechhhHHHHHHHHHHHHHHHHHhcc
Q 020739 11 VFAFGLLGILQIQKCHCLNIIFMLHAYVYVFVANIFICFHVTIIGNIVSFIVFLAP 66 (322)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~i~~~vgilG~i~si~~flSP 66 (322)
+.+.|++ ++|++|.++-+.+..-|
T Consensus 29 v~~iG~~--------------------------------i~G~IGf~I~li~~~i~ 52 (56)
T d1rh5b_ 29 VTALGIS--------------------------------LLGIIGYIIHVPATYIK 52 (56)
T ss_dssp HHHHHHH--------------------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--------------------------------HHHHHHHHHHHHHHHhh
Done!