BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020740
(322 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|C3L230|MURG_CLOB6 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Clostridium botulinum (strain 657 / Type
Ba4) GN=murG PE=3 SV=1
Length = 354
Score = 34.7 bits (78), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 183 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS 242
G+A FE + + P ++ D+ V++ + + IY++ LK +L +S K+ + +I
Sbjct: 235 GYAQFEYVNEELPDLMKASDL---VISRAGANVIYELLALKKPNLLIPLSKKSSRGDQI- 290
Query: 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKV 283
+ F K+ + LK +ED T++K NH L+ N+ V
Sbjct: 291 --LNAASFEKSGYSLVLKEEELEDKTLMKKLNH-LYENRNV 328
>sp|Q9VNH6|EXOC4_DROME Exocyst complex component 4 OS=Drosophila melanogaster GN=sec8 PE=1
SV=3
Length = 985
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 7/114 (6%)
Query: 33 AGFDGFVNSVKKLQRREISSKRDRAFTMTDAQERFRNIRLQEEYDTHDPKGHCSMVLPFL 92
AG VN +K L E + +R + +A+ + ++RL E HD + + VLP
Sbjct: 21 AGCGFLVNVIKSLGFSETTEERQKEKQKIEAEFKRSDLRLNELVSRHDQQ--LTQVLPLF 78
Query: 93 RKRSKIIEIVAARDIVFALAQS-GVCAAF--CRETNQRICFLNVTADEVIRSLF 143
+ S E+ A+R+ + A+ ++ GVC CR R +++ + + +
Sbjct: 79 SQVSS--EVTASRERIHAVKENLGVCKRLLQCRRDELRKMWMDAVQHKYVLEML 130
>sp|A8ESW7|SYD_ARCB4 Aspartate--tRNA ligase OS=Arcobacter butzleri (strain RM4018)
GN=aspS PE=3 SV=1
Length = 589
Score = 33.5 bits (75), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 67/173 (38%), Gaps = 22/173 (12%)
Query: 33 AGFDGFVNSVKKLQRREISSKRDRAFTMTDAQERFRN----IRLQEEYDTHDPKGHCSMV 88
AGFD + K + ++ + R FT D + F N I++ E+ +D C
Sbjct: 206 AGFDKYFQIAKCFRDEDLRADRQPEFTQIDVEMSFCNQEDVIKVAEKL-IYDIFTKCGKN 264
Query: 89 LPFLRKRSKIIEIVAAR-----DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLF 143
+P +R K E + D+ F + V F TN E+ +
Sbjct: 265 VPSTFRRMKYSEAMEKYGSDKPDLRFDMPLVDVIDIFANSTN-----------EIFAEIA 313
Query: 144 YNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR-GKPDAGFALFESESLKWP 195
+K N+ + + DN S R + +Y+R+ G G+ + + LK P
Sbjct: 314 KDKKNNRIKALKCKNGDNIFSKRQMKSFEDYVRKFGAKGLGYFQMKEDGLKGP 366
>sp|Q9KCA3|Y1670_BACHD UPF0302 protein BH1670 OS=Bacillus halodurans (strain ATCC BAA-125
/ DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=BH1670
PE=3 SV=1
Length = 183
Score = 33.1 bits (74), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 8/132 (6%)
Query: 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASG- 255
FVE + K L S D F Y + ++K +I+++P + I SG
Sbjct: 47 FVEEAERCPKALIMSTNDVHTVPFCFHKYQQVTMDAEKAFHDIRMNPEEAIYIQLHFSGA 106
Query: 256 -HVPLKILSIEDGTVLKSFNHLLHRNKKVD--FIEQ----FNEKLLVKQENENLQILDVR 308
H P I +ED + L+ + KK+ F+E+ F EK L+++ +E L D
Sbjct: 107 KHNPNYIAVLEDNPYVPENEDLIAKQKKLAEAFLERSVQSFEEKELLRRIDEALDARDKE 166
Query: 309 ISLFLPLQLQFI 320
L L QLQ +
Sbjct: 167 TFLTLSQQLQHL 178
>sp|A7GGX9|MURG_CLOBL UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Clostridium botulinum (strain Langeland /
NCTC 10281 / Type F) GN=murG PE=3 SV=1
Length = 354
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 183 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS 242
G+A FE + + P ++ D+ V++ + + IY++ LK +L +S K+ + +I
Sbjct: 235 GYAQFEYVNEELPDLMKASDL---VISRAGANVIYELLALKKPNLLIPLSKKSSRGDQI- 290
Query: 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKV 283
+ F K+ + LK +ED T++K N+ L+ N+ V
Sbjct: 291 --LNAASFEKSGYSLVLKEEELEDKTLMKKLNY-LYENRNV 328
>sp|B1IKH3|MURG_CLOBK UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Clostridium botulinum (strain Okra / Type
B1) GN=murG PE=3 SV=1
Length = 354
Score = 32.3 bits (72), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 183 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS 242
G+A FE + + P ++ D+ V++ + + IY++ LK +L +S K+ + +I
Sbjct: 235 GYAQFEYVNEELPDLMKASDL---VISRAGANVIYELLALKKPNLLIPLSKKSSRGDQI- 290
Query: 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKV 283
+ F K+ + LK +ED T++K N+ L+ N+ V
Sbjct: 291 --LNAASFEKSGYSLVLKEEELEDKTLMKKLNY-LYENRNV 328
>sp|A5I5J5|MURG_CLOBH UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Clostridium botulinum (strain Hall / ATCC
3502 / NCTC 13319 / Type A) GN=murG PE=3 SV=1
Length = 354
Score = 32.0 bits (71), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 183 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS 242
G+A FE + + P ++ D+ V++ + + IY++ LK +L +S K+ + +I
Sbjct: 235 GYAQFEYVNEELPDLMKASDL---VISRAGANVIYELLALKKPNLLIPLSKKSSRGDQI- 290
Query: 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKV 283
+ F K+ + LK +ED T++K N+ L+ N+ V
Sbjct: 291 --LNAASFEKSGYSLVLKEEELEDKTLIKKLNY-LYENRNV 328
>sp|A7FX11|MURG_CLOB1 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Clostridium botulinum (strain ATCC 19397
/ Type A) GN=murG PE=3 SV=1
Length = 354
Score = 32.0 bits (71), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 183 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS 242
G+A FE + + P ++ D+ V++ + + IY++ LK +L +S K+ + +I
Sbjct: 235 GYAQFEYVNEELPDLMKASDL---VISRAGANVIYELLALKKPNLLIPLSKKSSRGDQI- 290
Query: 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKV 283
+ F K+ + LK +ED T++K N+ L+ N+ V
Sbjct: 291 --LNAASFEKSGYSLVLKEEELEDKTLIKKLNY-LYENRNV 328
>sp|B9KES2|ATPG_CAMLR ATP synthase gamma chain OS=Campylobacter lari (strain RM2100 / D67
/ ATCC BAA-1060) GN=atpG PE=3 SV=1
Length = 294
Score = 31.6 bits (70), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Query: 41 SVKKLQRREISSKRDRAFTMTDAQERFRNIRLQ-EEYDTHDPKGHCSMVLPFLRKRSKII 99
S KL++ E ++K+ + F E I + +Y+ D K LPF RK+ I
Sbjct: 28 STAKLRKAEEAAKKSKVFAQK-IDEVLSEIAFKINQYEGLDDK------LPFFRKKDNIE 80
Query: 100 EIVAARDIVFALAQSGVCAAF 120
++ DI+F A G+C F
Sbjct: 81 KM----DIIFVTADKGLCGGF 97
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,237,784
Number of Sequences: 539616
Number of extensions: 4486189
Number of successful extensions: 13595
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 13592
Number of HSP's gapped (non-prelim): 18
length of query: 322
length of database: 191,569,459
effective HSP length: 117
effective length of query: 205
effective length of database: 128,434,387
effective search space: 26329049335
effective search space used: 26329049335
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)