Query 020740
Match_columns 322
No_of_seqs 39 out of 41
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 04:45:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020740.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020740hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00200 WD40 WD40 domain, foun 98.0 0.0021 4.6E-08 51.9 18.1 195 96-312 10-211 (289)
2 TIGR03866 PQQ_ABC_repeats PQQ- 97.5 0.012 2.5E-07 50.5 16.9 185 108-312 4-191 (300)
3 cd00200 WD40 WD40 domain, foun 97.5 0.033 7.1E-07 45.1 18.0 189 96-306 94-289 (289)
4 TIGR03866 PQQ_ABC_repeats PQQ- 97.2 0.063 1.4E-06 46.0 17.6 179 113-312 93-283 (300)
5 PLN00181 protein SPA1-RELATED; 97.1 0.056 1.2E-06 56.4 18.9 186 114-311 457-651 (793)
6 PTZ00420 coronin; Provisional 95.9 0.81 1.7E-05 47.9 18.9 178 116-309 55-249 (568)
7 PTZ00421 coronin; Provisional 95.7 0.71 1.5E-05 47.0 16.9 162 134-311 73-248 (493)
8 PLN00181 protein SPA1-RELATED; 95.6 0.82 1.8E-05 48.0 17.7 195 95-310 532-740 (793)
9 KOG0266 WD40 repeat-containing 95.5 0.47 1E-05 47.0 14.6 185 105-311 171-367 (456)
10 KOG0274 Cdc4 and related F-box 95.0 0.63 1.4E-05 48.3 14.2 169 118-314 314-488 (537)
11 KOG0289 mRNA splicing factor [ 94.6 0.35 7.6E-06 50.0 11.0 191 99-312 225-423 (506)
12 PTZ00421 coronin; Provisional 94.3 2.8 6.1E-05 42.8 16.9 155 96-273 126-298 (493)
13 KOG0274 Cdc4 and related F-box 94.0 0.42 9.2E-06 49.5 10.3 156 95-273 331-490 (537)
14 PTZ00420 coronin; Provisional 93.3 12 0.00026 39.4 19.6 197 96-312 75-297 (568)
15 KOG1446 Histone H3 (Lys4) meth 92.7 12 0.00025 37.3 17.9 114 193-313 141-267 (311)
16 KOG0272 U4/U6 small nuclear ri 92.6 0.95 2.1E-05 46.6 10.1 160 105-273 187-426 (459)
17 KOG1446 Histone H3 (Lys4) meth 91.8 2 4.3E-05 42.6 10.9 113 195-311 17-133 (311)
18 KOG0291 WD40-repeat-containing 88.6 4 8.7E-05 44.9 10.8 108 197-310 385-510 (893)
19 KOG0266 WD40 repeat-containing 87.5 3 6.4E-05 41.5 8.6 108 203-314 169-282 (456)
20 KOG0295 WD40 repeat-containing 86.8 19 0.00041 37.0 13.6 196 94-311 107-367 (406)
21 KOG0279 G protein beta subunit 86.2 39 0.00084 33.8 15.9 194 98-314 66-268 (315)
22 KOG1036 Mitotic spindle checkp 85.8 13 0.00028 37.2 11.8 54 130-189 7-60 (323)
23 KOG0316 Conserved WD40 repeat- 84.4 11 0.00024 37.1 10.4 174 116-313 82-262 (307)
24 KOG0295 WD40 repeat-containing 83.4 29 0.00062 35.7 13.2 104 204-311 205-325 (406)
25 KOG1272 WD40-repeat-containing 82.8 3.8 8.2E-05 43.0 7.0 152 108-263 144-364 (545)
26 KOG0319 WD40-repeat-containing 81.8 9.1 0.0002 41.9 9.6 195 106-311 337-580 (775)
27 COG2319 FOG: WD40 repeat [Gene 80.8 32 0.0007 28.8 17.9 177 114-311 177-362 (466)
28 KOG0282 mRNA splicing factor [ 79.6 4.4 9.6E-05 42.4 6.2 119 190-313 206-335 (503)
29 PF13360 PQQ_2: PQQ-like domai 79.5 38 0.00083 28.9 16.4 190 97-313 28-235 (238)
30 KOG0281 Beta-TrCP (transducin 79.3 1.8 4E-05 44.3 3.3 88 212-310 214-307 (499)
31 PF15065 NCU-G1: Lysosomal tra 78.8 26 0.00057 35.1 11.2 89 133-226 9-102 (350)
32 KOG0285 Pleiotropic regulator 77.9 10 0.00022 39.1 8.0 110 190-311 149-268 (460)
33 PRK11028 6-phosphogluconolacto 77.0 61 0.0013 29.8 15.2 114 193-309 80-206 (330)
34 KOG0643 Translation initiation 76.6 40 0.00086 33.8 11.4 103 205-310 65-179 (327)
35 KOG0772 Uncharacterized conser 75.4 21 0.00045 38.3 9.7 159 130-311 208-397 (641)
36 KOG0275 Conserved WD40 repeat- 75.1 3.2 7E-05 42.3 3.7 191 97-312 265-471 (508)
37 PRK15095 FKBP-type peptidyl-pr 74.5 4.1 8.8E-05 35.8 3.8 59 226-285 77-136 (156)
38 KOG0647 mRNA export protein (c 71.3 22 0.00048 35.8 8.4 111 198-313 33-150 (347)
39 PRK10737 FKBP-type peptidyl-pr 67.9 5.1 0.00011 37.0 3.1 60 224-285 72-132 (196)
40 KOG0316 Conserved WD40 repeat- 65.5 32 0.0007 34.0 8.0 111 203-317 27-140 (307)
41 KOG0303 Actin-binding protein 65.2 50 0.0011 34.5 9.6 135 104-259 143-280 (472)
42 PRK11138 outer membrane biogen 64.8 1.4E+02 0.0029 28.8 15.1 187 102-312 66-278 (394)
43 KOG0281 Beta-TrCP (transducin 64.4 17 0.00037 37.5 6.2 54 194-247 236-291 (499)
44 KOG2055 WD40 repeat protein [G 63.4 23 0.00049 37.4 6.9 105 204-312 268-378 (514)
45 TIGR03300 assembly_YfgL outer 63.3 1.3E+02 0.0029 28.2 14.6 187 102-312 62-263 (377)
46 KOG0278 Serine/threonine kinas 63.0 56 0.0012 32.7 9.2 164 71-310 122-299 (334)
47 KOG0284 Polyadenylation factor 61.8 46 0.00099 34.8 8.7 180 109-309 112-295 (464)
48 KOG0288 WD40 repeat protein Ti 61.3 12 0.00026 38.9 4.5 112 197-315 224-337 (459)
49 PF08662 eIF2A: Eukaryotic tra 61.0 74 0.0016 28.2 9.0 114 198-315 65-186 (194)
50 KOG0319 WD40-repeat-containing 60.9 20 0.00044 39.4 6.3 74 196-273 509-585 (775)
51 PF07569 Hira: TUP1-like enhan 60.4 18 0.00038 33.2 5.1 68 88-155 5-85 (219)
52 KOG0649 WD40 repeat protein [G 60.1 1.6E+02 0.0034 29.5 11.6 196 97-318 64-282 (325)
53 KOG0315 G-protein beta subunit 59.8 69 0.0015 31.9 9.1 115 204-318 135-255 (311)
54 KOG0315 G-protein beta subunit 58.8 87 0.0019 31.2 9.6 100 204-309 9-114 (311)
55 COG4260 Membrane protease subu 58.1 9.5 0.00021 38.1 3.1 86 203-294 54-165 (345)
56 PF07569 Hira: TUP1-like enhan 56.1 60 0.0013 29.8 7.8 67 182-251 1-85 (219)
57 PF04435 SPK: Domain of unknow 55.9 13 0.00029 29.5 3.1 26 192-218 83-108 (109)
58 PF08662 eIF2A: Eukaryotic tra 55.5 1.5E+02 0.0032 26.3 14.8 135 123-273 46-186 (194)
59 TIGR02658 TTQ_MADH_Hv methylam 54.5 1.2E+02 0.0027 30.2 10.2 76 194-272 48-143 (352)
60 KOG0313 Microtubule binding pr 53.9 1.2E+02 0.0027 31.5 10.2 197 103-311 113-379 (423)
61 smart00306 HintN Hint (Hedgeho 53.9 82 0.0018 23.7 7.1 48 205-252 26-79 (100)
62 KOG0279 G protein beta subunit 52.8 2.1E+02 0.0046 28.8 11.3 123 136-276 148-273 (315)
63 PF13360 PQQ_2: PQQ-like domai 52.3 1.5E+02 0.0032 25.3 11.7 94 213-313 44-145 (238)
64 COG1047 SlpA FKBP-type peptidy 51.8 13 0.00029 34.1 2.8 60 223-284 72-132 (174)
65 PRK11138 outer membrane biogen 51.8 2.3E+02 0.0049 27.3 17.1 181 103-314 158-359 (394)
66 TIGR02658 TTQ_MADH_Hv methylam 51.3 1.7E+02 0.0036 29.3 10.5 79 194-274 246-339 (352)
67 COG2319 FOG: WD40 repeat [Gene 50.2 1.5E+02 0.0033 24.8 11.0 108 198-311 161-274 (466)
68 KOG0310 Conserved WD40 repeat- 47.5 2.3E+02 0.0051 30.1 11.2 108 197-310 115-227 (487)
69 KOG2110 Uncharacterized conser 47.1 1.1E+02 0.0023 31.7 8.5 58 214-273 152-212 (391)
70 KOG0306 WD40-repeat-containing 46.3 85 0.0018 35.2 8.1 109 197-311 26-140 (888)
71 KOG0273 Beta-transducin family 44.8 1E+02 0.0022 32.9 8.1 108 199-313 366-487 (524)
72 KOG0265 U5 snRNP-specific prot 44.7 69 0.0015 32.4 6.6 145 135-316 89-252 (338)
73 KOG0300 WD40 repeat-containing 44.6 61 0.0013 33.4 6.4 139 117-281 296-439 (481)
74 KOG0306 WD40-repeat-containing 44.1 70 0.0015 35.8 7.1 45 200-244 379-423 (888)
75 KOG0302 Ribosome Assembly prot 42.6 2.3E+02 0.005 29.7 10.0 102 204-310 269-380 (440)
76 KOG0277 Peroxisomal targeting 42.2 1.3E+02 0.0028 30.1 8.0 26 198-223 110-135 (311)
77 KOG0277 Peroxisomal targeting 41.7 1.7E+02 0.0036 29.4 8.6 144 112-271 124-271 (311)
78 KOG1539 WD repeat protein [Gen 41.6 74 0.0016 35.8 6.9 108 198-315 499-613 (910)
79 KOG0269 WD40 repeat-containing 41.6 46 0.001 37.1 5.3 49 197-245 138-188 (839)
80 PF01436 NHL: NHL repeat; Int 41.2 57 0.0012 20.8 3.7 28 192-220 1-28 (28)
81 KOG0305 Anaphase promoting com 40.5 3.5E+02 0.0075 28.6 11.2 178 105-310 229-463 (484)
82 KOG0290 Conserved WD40 repeat- 40.0 3.1E+02 0.0068 28.0 10.3 109 199-313 157-279 (364)
83 PF11715 Nup160: Nucleoporin N 39.6 1.1E+02 0.0025 30.8 7.4 20 212-231 237-256 (547)
84 COG3919 Predicted ATP-grasp en 39.2 25 0.00055 35.7 2.8 28 190-223 258-285 (415)
85 KOG0264 Nucleosome remodeling 37.9 57 0.0012 33.9 5.1 110 197-309 277-405 (422)
86 KOG1539 WD repeat protein [Gen 37.9 2.4E+02 0.0052 32.0 10.0 116 190-315 163-282 (910)
87 KOG0273 Beta-transducin family 37.8 3.3E+02 0.0072 29.2 10.5 107 198-308 415-523 (524)
88 TIGR01445 intein_Nterm intein 35.9 87 0.0019 23.3 4.6 32 217-248 49-80 (81)
89 KOG4547 WD40 repeat-containing 34.4 1E+02 0.0022 33.0 6.4 91 193-288 100-195 (541)
90 KOG2111 Uncharacterized conser 34.3 5.3E+02 0.011 26.4 14.7 157 94-271 93-262 (346)
91 TIGR02781 VirB9 P-type conjuga 34.1 3.4E+02 0.0075 25.4 9.2 69 206-276 31-108 (243)
92 KOG1354 Serine/threonine prote 33.3 64 0.0014 33.4 4.5 73 198-274 219-311 (433)
93 KOG0321 WD40 repeat-containing 33.2 71 0.0015 35.1 5.0 180 96-317 101-310 (720)
94 PF14269 Arylsulfotran_2: Aryl 32.0 2.4E+02 0.0052 27.2 8.0 52 223-274 32-113 (299)
95 KOG1007 WD repeat protein TSSC 31.2 35 0.00076 34.5 2.3 92 116-240 127-218 (370)
96 PF04841 Vps16_N: Vps16, N-ter 30.8 2E+02 0.0044 28.7 7.5 91 213-309 9-110 (410)
97 TIGR03300 assembly_YfgL outer 30.4 4.7E+02 0.01 24.6 16.1 93 213-313 249-343 (377)
98 KOG1274 WD40 repeat protein [G 29.5 1.6E+02 0.0035 33.5 7.1 106 198-309 144-263 (933)
99 KOG0263 Transcription initiati 29.1 1.9E+02 0.0041 32.0 7.4 17 297-313 596-612 (707)
100 KOG1408 WD40 repeat protein [F 28.6 62 0.0013 36.4 3.8 29 200-229 332-367 (1080)
101 KOG0300 WD40 repeat-containing 28.5 1.4E+02 0.003 30.9 6.0 20 204-223 325-344 (481)
102 KOG0283 WD40 repeat-containing 27.7 2E+02 0.0044 31.9 7.3 118 191-314 405-538 (712)
103 PRK11028 6-phosphogluconolacto 26.7 4.8E+02 0.01 24.0 8.7 76 194-269 229-310 (330)
104 KOG0640 mRNA cleavage stimulat 26.7 2.3E+02 0.0049 29.4 7.0 99 104-222 227-334 (430)
105 PF04053 Coatomer_WDAD: Coatom 26.2 1.2E+02 0.0026 31.1 5.1 72 74-155 92-163 (443)
106 KOG0310 Conserved WD40 repeat- 26.0 8.4E+02 0.018 26.1 13.5 182 107-313 82-273 (487)
107 TIGR03075 PQQ_enz_alc_DH PQQ-d 25.8 3E+02 0.0066 28.5 8.0 33 104-136 68-100 (527)
108 KOG0265 U5 snRNP-specific prot 25.5 5.4E+02 0.012 26.3 9.3 105 192-311 44-166 (338)
109 KOG0292 Vesicle coat complex C 25.2 1.7E+02 0.0038 33.7 6.4 100 199-309 46-166 (1202)
110 PF00400 WD40: WD domain, G-be 24.8 1.7E+02 0.0038 18.2 4.0 22 199-221 18-39 (39)
111 PRK01742 tolB translocation pr 23.9 7E+02 0.015 24.5 10.7 103 204-309 214-323 (429)
112 KOG0296 Angio-associated migra 23.9 3.6E+02 0.0078 28.1 7.9 114 199-313 197-361 (399)
113 PF00780 CNH: CNH domain; Int 23.7 5.3E+02 0.011 23.0 10.2 107 194-313 140-260 (275)
114 PF02239 Cytochrom_D1: Cytochr 23.6 7.2E+02 0.016 24.5 13.0 112 108-235 9-120 (369)
115 KOG0641 WD40 repeat protein [G 23.5 3.5E+02 0.0077 27.0 7.5 118 186-309 165-304 (350)
116 PRK05561 DNA topoisomerase IV 23.0 7.4E+02 0.016 27.3 10.6 114 100-226 502-621 (742)
117 PF09465 LBR_tudor: Lamin-B re 23.0 56 0.0012 25.2 1.6 30 188-219 10-39 (55)
118 COG4573 GatZ Predicted tagatos 22.6 35 0.00076 35.1 0.6 21 190-213 221-241 (426)
119 PLN00145 tyrosine/nicotianamin 22.2 44 0.00095 33.0 1.2 12 1-12 1-12 (430)
120 PF11763 DIPSY: Cell-wall adhe 22.0 5.7E+02 0.012 22.7 9.4 70 196-274 29-100 (123)
121 KOG0291 WD40-repeat-containing 21.4 3.2E+02 0.0068 31.0 7.4 49 210-259 30-82 (893)
122 PLN02919 haloacid dehalogenase 21.1 8.7E+02 0.019 27.7 10.9 78 190-271 801-894 (1057)
123 PF15492 Nbas_N: Neuroblastoma 21.1 1.8E+02 0.0039 28.9 5.0 61 157-235 24-84 (282)
124 cd08984 GH43_5 Glycosyl hydrol 20.7 1.8E+02 0.0039 27.1 4.8 48 191-247 236-291 (294)
125 cd01205 WASP WASP-type EVH1 do 20.6 1.6E+02 0.0035 25.0 4.1 32 243-274 29-60 (105)
126 KOG0267 Microtubule severing p 20.1 1.3E+02 0.0027 33.7 4.1 164 125-314 58-232 (825)
No 1
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.97 E-value=0.0021 Score=51.88 Aligned_cols=195 Identities=17% Similarity=0.274 Sum_probs=119.5
Q ss_pred cceeEEeecc--chhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehh
Q 020740 96 SKIIEIVAAR--DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (322)
Q Consensus 96 S~V~EIv~a~--diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e 173 (322)
.+|..+-... +++++-...|....|+..+++.+..+..... .+.++-+...++.+++++. | ..++...+
T Consensus 10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~---~--~~i~i~~~--- 80 (289)
T cd00200 10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG-PVRDVAASADGTYLASGSS---D--KTIRLWDL--- 80 (289)
T ss_pred CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCc-ceeEEEECCCCCEEEEEcC---C--CeEEEEEc---
Confidence 4455444443 5666666789999999998887776655444 4555666656656666442 2 22332222
Q ss_pred hhHhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc--cceeeEEEcC-CEEEEEE
Q 020740 174 YIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP-GIMLLIF 250 (322)
Q Consensus 174 ~i~~gk~~~g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsd--e~VqEIkIS~-Gimll~~ 250 (322)
..++.-. -|.. .-..+-.+.|+.. +++++....++..++||+.+...++.+.. ..+..+.++| +.+++..
T Consensus 81 --~~~~~~~---~~~~-~~~~i~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 153 (289)
T cd00200 81 --ETGECVR---TLTG-HTSYVSSVAFSPD-GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASS 153 (289)
T ss_pred --CcccceE---EEec-cCCcEEEEEEcCC-CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEE
Confidence 1111100 0110 0012233556554 56666666799999999999998888873 3589999998 5554444
Q ss_pred ecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhhccc--eeEEEecCCceeEEEcccccc
Q 020740 251 TKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNE--KLLVKQENENLQILDVRISLF 312 (322)
Q Consensus 251 q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~E--kLLIKQE~~~LqI~Dl~~~~~ 312 (322)
. ..+ -+.++++.+++.+..+.. | ...+.-+..... .|++--.+..+.+||+.+.+.
T Consensus 154 ~-~~~--~i~i~d~~~~~~~~~~~~--~-~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~ 211 (289)
T cd00200 154 S-QDG--TIKLWDLRTGKCVATLTG--H-TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211 (289)
T ss_pred c-CCC--cEEEEEccccccceeEec--C-ccccceEEECCCcCEEEEecCCCcEEEEECCCCce
Confidence 3 233 367899999988887762 2 334443443333 788888899999999986443
No 2
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.54 E-value=0.012 Score=50.46 Aligned_cols=185 Identities=11% Similarity=0.150 Sum_probs=107.6
Q ss_pred hhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcce
Q 020740 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187 (322)
Q Consensus 108 I~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LF 187 (322)
++.-...|...+||..|++.+..++... -++++-++.+...+.++ .. .++ .+. ..+. ..|+.- ..+
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~~~~~~~~~--~~~~l~~~~dg~~l~~~-~~-~~~--~v~--~~d~---~~~~~~---~~~ 69 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEVTRTFPVGQ--RPRGITLSKDGKLLYVC-AS-DSD--TIQ--VIDL---ATGEVI---GTL 69 (300)
T ss_pred EEEecCCCEEEEEECCCCceEEEEECCC--CCCceEECCCCCEEEEE-EC-CCC--eEE--EEEC---CCCcEE---Eec
Confidence 3344567888999999999888887532 35677777665554332 21 111 122 2211 112110 001
Q ss_pred eecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec-ccceeeEEEc-CCEEEEEEecCCCeeEEEEEEee
Q 020740 188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIE 265 (322)
Q Consensus 188 e~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs-de~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIe 265 (322)
.. -..|..+-|+....++.+.+..++..++||+++-+.+..+. +.....+.++ +|-++++.....+. +.+++..
T Consensus 70 ~~--~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~--~~~~d~~ 145 (300)
T TIGR03866 70 PS--GPDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNM--AHFIDTK 145 (300)
T ss_pred cC--CCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCe--EEEEeCC
Confidence 11 12245667776666676767778999999999988888876 3456778887 46665555444333 3446888
Q ss_pred cCceeeeeeeccccCCcchhhhhccceeEEE-ecCCceeEEEcccccc
Q 020740 266 DGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRISLF 312 (322)
Q Consensus 266 dG~~l~~f~~~L~~sk~iqFiE~f~EkLLIK-QE~~~LqI~Dl~~~~~ 312 (322)
+++.+...... ....-+.|- .-+.+|++- +.+..+.+||+.+.+.
T Consensus 146 ~~~~~~~~~~~-~~~~~~~~s-~dg~~l~~~~~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 146 TYEIVDNVLVD-QRPRFAEFT-ADGKELWVSSEIGGTVSVIDVATRKV 191 (300)
T ss_pred CCeEEEEEEcC-CCccEEEEC-CCCCEEEEEcCCCCEEEEEEcCccee
Confidence 88776644311 111112321 224456554 4577899999988654
No 3
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=97.49 E-value=0.033 Score=45.07 Aligned_cols=189 Identities=18% Similarity=0.280 Sum_probs=113.5
Q ss_pred cceeEEeecc--chhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehh
Q 020740 96 SKIIEIVAAR--DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (322)
Q Consensus 96 S~V~EIv~a~--diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e 173 (322)
.+|..+.... .++++-...|....||..+++.+-.+. .+..-|.++-++..+.-+++.+ .|. .+....+
T Consensus 94 ~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~---~~~--~i~i~d~--- 164 (289)
T cd00200 94 SYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPDGTFVASSS---QDG--TIKLWDL--- 164 (289)
T ss_pred CcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCcCCEEEEEc---CCC--cEEEEEc---
Confidence 3566666554 455555558999999998888877777 4455688888887754443322 122 2333222
Q ss_pred hhHhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEe-c-ccceeeEEEcC-CEEEEEE
Q 020740 174 YIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-S-DKNVQEIKISP-GIMLLIF 250 (322)
Q Consensus 174 ~i~~gk~~~g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsI-s-de~VqEIkIS~-Gimll~~ 250 (322)
+.+++-. .|.. .-...--+.|++.+..+++.+. ++..++||+++-+.+.++ . ...+..+.++| +.+++..
T Consensus 165 --~~~~~~~---~~~~-~~~~i~~~~~~~~~~~l~~~~~-~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 237 (289)
T cd00200 165 --RTGKCVA---TLTG-HTGEVNSVAFSPDGEKLLSSSS-DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASG 237 (289)
T ss_pred --cccccce---eEec-CccccceEEECCCcCEEEEecC-CCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEE
Confidence 2222211 1111 1113445677776656666554 999999999988877776 3 33688888887 4444433
Q ss_pred ecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhhcc--ceeEEEecCCceeEEE
Q 020740 251 TKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFN--EKLLVKQENENLQILD 306 (322)
Q Consensus 251 q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~--EkLLIKQE~~~LqI~D 306 (322)
. ..+ -+.++++.+++.+..+.. | ...+.-+.-.. ..|+.=-++..+++||
T Consensus 238 ~-~~~--~i~i~~~~~~~~~~~~~~--~-~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 238 S-EDG--TIRVWDLRTGECVQTLSG--H-TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred c-CCC--cEEEEEcCCceeEEEccc--c-CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 3 223 357889999988887761 2 22333233332 4566656777888886
No 4
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.20 E-value=0.063 Score=45.96 Aligned_cols=179 Identities=13% Similarity=0.142 Sum_probs=105.5
Q ss_pred ccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceee-cc
Q 020740 113 QSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-ES 191 (322)
Q Consensus 113 ~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~-~~ 191 (322)
..|...+||..+++.+..+... ..++++-++.+.+.+.+.+. +. +.+ ... +...++ +... ..
T Consensus 93 ~~~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~---~~-~~~--~~~---d~~~~~------~~~~~~~ 155 (300)
T TIGR03866 93 DDNLVTVIDIETRKVLAEIPVG--VEPEGMAVSPDGKIVVNTSE---TT-NMA--HFI---DTKTYE------IVDNVLV 155 (300)
T ss_pred CCCeEEEEECCCCeEEeEeeCC--CCcceEEECCCCCEEEEEec---CC-CeE--EEE---eCCCCe------EEEEEEc
Confidence 4578888898888877777532 22466777766555544221 11 100 111 111111 1111 11
Q ss_pred cCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEeccc---------ceeeEEEcC-CEEEEEEecCCCeeEEEE
Q 020740 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK---------NVQEIKISP-GIMLLIFTKASGHVPLKI 261 (322)
Q Consensus 192 L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde---------~VqEIkIS~-Gimll~~q~~~~~iPlkI 261 (322)
-..|..+.|+..+..+++-...++..++||+++-+.+..+..+ ....|.++| |-++++.....+. +.+
T Consensus 156 ~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~--i~v 233 (300)
T TIGR03866 156 DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR--VAV 233 (300)
T ss_pred CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe--EEE
Confidence 2357889998766666554556899999999998887766421 124577774 5554444344444 578
Q ss_pred EEeecCceeeeeeeccccCCcchhhhhccceeEEE-ecCCceeEEEcccccc
Q 020740 262 LSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRISLF 312 (322)
Q Consensus 262 lsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIK-QE~~~LqI~Dl~~~~~ 312 (322)
+++++|+.+..+..- +.-..+.| -+-+++|++= ..+..|.|||+.+.+.
T Consensus 234 ~d~~~~~~~~~~~~~-~~~~~~~~-~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 234 VDAKTYEVLDYLLVG-QRVWQLAF-TPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred EECCCCcEEEEEEeC-CCcceEEE-CCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 899999988654321 11222332 2456677775 5678899999999874
No 5
>PLN00181 protein SPA1-RELATED; Provisional
Probab=97.05 E-value=0.056 Score=56.45 Aligned_cols=186 Identities=15% Similarity=0.218 Sum_probs=109.5
Q ss_pred cccceeeecccccEEEEecCC----CCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhh-HhCCCCCCCccee
Q 020740 114 SGVCAAFCRETNQRICFLNVT----ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI-RRGKPDAGFALFE 188 (322)
Q Consensus 114 sG~c~af~r~tn~~iC~lN~s----~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i-~~gk~~~g~~LFe 188 (322)
+|+|...+..+-+....++.. +...|.++=++.+.+-+++.+ .+ ..++ .-+.+.. ..++. ...|..+
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg----~D-~~I~--iwd~~~~~~~~~~-~~~~~~~ 528 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAG----VN-KKIK--IFECESIIKDGRD-IHYPVVE 528 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEe----CC-CEEE--EEECCcccccccc-cccceEE
Confidence 677777766555555555533 577899998987766655543 22 1222 2222111 11110 1112111
Q ss_pred ecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcC--CEEEEEEecCCCeeEEEEEEe
Q 020740 189 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP--GIMLLIFTKASGHVPLKILSI 264 (322)
Q Consensus 189 ~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~--Gimll~~q~~~~~iPlkIlsI 264 (322)
-..-.....+-|+...+..++-...|+..++||+.+...+-.+. ...|..+.++| |-+|+.-- ...+ ++|.++
T Consensus 529 ~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs-~Dg~--v~iWd~ 605 (793)
T PLN00181 529 LASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS-DDGS--VKLWSI 605 (793)
T ss_pred ecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEc-CCCE--EEEEEC
Confidence 11001112344554456666667779999999999988776664 35588888874 45544332 2333 789999
Q ss_pred ecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEEccccc
Q 020740 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISL 311 (322)
Q Consensus 265 edG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~ 311 (322)
.+|+.++.+... ..-.-+.|...-+.+|..--.+..+++||+++.+
T Consensus 606 ~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~ 651 (793)
T PLN00181 606 NQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK 651 (793)
T ss_pred CCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 999998877531 1112233433346678888899999999999865
No 6
>PTZ00420 coronin; Provisional
Probab=95.93 E-value=0.81 Score=47.89 Aligned_cols=178 Identities=16% Similarity=0.235 Sum_probs=99.9
Q ss_pred cceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCC---CCcc--eeec
Q 020740 116 VCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA---GFAL--FESE 190 (322)
Q Consensus 116 ~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~---g~~L--Fe~~ 190 (322)
+...++..+...++.+.. +..-|.++=++..++.++. | ++++ ..++.-.++ .+.... ..|+ +..
T Consensus 55 vI~L~~~~r~~~v~~L~g-H~~~V~~lafsP~~~~lLA-S--gS~D-gtIrIWDi~-----t~~~~~~~i~~p~~~L~g- 123 (568)
T PTZ00420 55 AIRLENQMRKPPVIKLKG-HTSSILDLQFNPCFSEILA-S--GSED-LTIRVWEIP-----HNDESVKEIKDPQCILKG- 123 (568)
T ss_pred EEEeeecCCCceEEEEcC-CCCCEEEEEEcCCCCCEEE-E--EeCC-CeEEEEECC-----CCCccccccccceEEeec-
Confidence 444566666666676754 4456677777766544443 1 2333 233333322 111000 0011 110
Q ss_pred ccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc-cceeeEEEc-CCEEEEEEecCCCeeEEEEEEeecCc
Q 020740 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGT 268 (322)
Q Consensus 191 ~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsd-e~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~ 268 (322)
--..-..+.|...+..+++-...|+..++||+++-+.++++.. ..|..+.++ +|-+|+.-- .... ++|+|+.+|+
T Consensus 124 H~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s-~D~~--IrIwD~Rsg~ 200 (568)
T PTZ00420 124 HKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTC-VGKH--MHIIDPRKQE 200 (568)
T ss_pred CCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEe-cCCE--EEEEECCCCc
Confidence 0122345678776666766556799999999999998888753 457777777 466554432 2233 7999999999
Q ss_pred eeeeeeeccccCC---cchhhhhc---cceeEEEecC----CceeEEEccc
Q 020740 269 VLKSFNHLLHRNK---KVDFIEQF---NEKLLVKQEN----ENLQILDVRI 309 (322)
Q Consensus 269 ~l~~f~~~L~~sk---~iqFiE~f---~EkLLIKQE~----~~LqI~Dl~~ 309 (322)
.+..+. -|... ..-++..| +.+|+.=-.+ ..++|||+++
T Consensus 201 ~i~tl~--gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 201 IASSFH--IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred EEEEEe--cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 998765 23322 11122222 2355553322 3699999996
No 7
>PTZ00421 coronin; Provisional
Probab=95.67 E-value=0.71 Score=47.05 Aligned_cols=162 Identities=17% Similarity=0.261 Sum_probs=94.9
Q ss_pred CCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCC--CCCCccee-ecccCCCCeEEecCCCceEEEE
Q 020740 134 TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP--DAGFALFE-SESLKWPGFVEFDDVNGKVLTY 210 (322)
Q Consensus 134 s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~--~~g~~LFe-~~~L~~PgFVEFDdvNgkilty 210 (322)
.+..-|.++=++..++.++. .+++| ..++.--++ .+.+ ....++.. ..--..-..+.|....+.+|+-
T Consensus 73 GH~~~V~~v~fsP~d~~~La---SgS~D-gtIkIWdi~-----~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaS 143 (493)
T PTZ00421 73 GQEGPIIDVAFNPFDPQKLF---TASED-GTIMGWGIP-----EEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLAS 143 (493)
T ss_pred CCCCCEEEEEEcCCCCCEEE---EEeCC-CEEEEEecC-----CCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEE
Confidence 45667888888874444333 12344 334433332 2211 01112211 1112234568888776667777
Q ss_pred ecCCCeEEEEeccCcEEEEEec--ccceeeEEEcC-CEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCC---cch
Q 020740 211 SAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK---KVD 284 (322)
Q Consensus 211 ~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk---~iq 284 (322)
...|+..++||+.+-+.+..+. ...|..+..++ |-+|+.-- .... ++|+|+.+|+.+..+.. |... .+.
T Consensus 144 gs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs-~Dg~--IrIwD~rsg~~v~tl~~--H~~~~~~~~~ 218 (493)
T PTZ00421 144 AGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTS-KDKK--LNIIDPRDGTIVSSVEA--HASAKSQRCL 218 (493)
T ss_pred EeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEec-CCCE--EEEEECCCCcEEEEEec--CCCCcceEEE
Confidence 7789999999999999888886 45688888884 55444333 2333 68999999998887652 3222 222
Q ss_pred hhhhccceeEE-----EecCCceeEEEccccc
Q 020740 285 FIEQFNEKLLV-----KQENENLQILDVRISL 311 (322)
Q Consensus 285 FiE~f~EkLLI-----KQE~~~LqI~Dl~~~~ 311 (322)
|.- ...+++ +-.+..+++||+++..
T Consensus 219 w~~--~~~~ivt~G~s~s~Dr~VklWDlr~~~ 248 (493)
T PTZ00421 219 WAK--RKDLIITLGCSKSQQRQIMLWDTRKMA 248 (493)
T ss_pred EcC--CCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence 321 222333 2346789999999754
No 8
>PLN00181 protein SPA1-RELATED; Provisional
Probab=95.64 E-value=0.82 Score=48.00 Aligned_cols=195 Identities=18% Similarity=0.250 Sum_probs=116.2
Q ss_pred ccceeEEeec---cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeee
Q 020740 95 RSKIIEIVAA---RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (322)
Q Consensus 95 RS~V~EIv~a---~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~ 171 (322)
.++|..+... ..+++.-...|....||..+++.+..++... .-|.++-++..+.+++... ..|. .++.-.
T Consensus 532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~-~~V~~l~~~p~~~~~L~Sg--s~Dg--~v~iWd-- 604 (793)
T PLN00181 532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHE-KRVWSIDYSSADPTLLASG--SDDG--SVKLWS-- 604 (793)
T ss_pred cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCC-CCEEEEEEcCCCCCEEEEE--cCCC--EEEEEE--
Confidence 4555555543 3467777778999999999999888887544 4566777775444444311 1222 222222
Q ss_pred hhhhHhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcE-EEEEec--ccceeeEEEcCCEEEE
Q 020740 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS--DKNVQEIKISPGIMLL 248 (322)
Q Consensus 172 ~e~i~~gk~~~g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs-~LYsIs--de~VqEIkIS~Gimll 248 (322)
++.|+. +.+-..-...-.+.|...+|..++....|+..++||+++.. .+..+. ...|..+...+|-.++
T Consensus 605 ---~~~~~~-----~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~~~~lv 676 (793)
T PLN00181 605 ---INQGVS-----IGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVDSSTLV 676 (793)
T ss_pred ---CCCCcE-----EEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeCCCEEE
Confidence 222221 11111001123456666788999989999999999999876 455554 3467788887776644
Q ss_pred EEecCCCeeEEEEEEeecC------ceeeeeeeccccCCcchhh--hhccceeEEEecCCceeEEEcccc
Q 020740 249 IFTKASGHVPLKILSIEDG------TVLKSFNHLLHRNKKVDFI--EQFNEKLLVKQENENLQILDVRIS 310 (322)
Q Consensus 249 ~~q~~~~~iPlkIlsIedG------~~l~~f~~~L~~sk~iqFi--E~f~EkLLIKQE~~~LqI~Dl~~~ 310 (322)
..- ..+. ++|.++.++ +.+..+. .+...+.++ -.-+.+|..==++..+.|||....
T Consensus 677 s~s-~D~~--ikiWd~~~~~~~~~~~~l~~~~---gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 677 SSS-TDNT--LKLWDLSMSISGINETPLHSFM---GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred EEE-CCCE--EEEEeCCCCccccCCcceEEEc---CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 432 3333 788888753 4455443 122332222 222456666668999999997643
No 9
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.48 E-value=0.47 Score=47.00 Aligned_cols=185 Identities=14% Similarity=0.202 Sum_probs=115.5
Q ss_pred cchhhhhhccccceeeeccccc--EEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCC
Q 020740 105 RDIVFALAQSGVCAAFCRETNQ--RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA 182 (322)
Q Consensus 105 ~diI~aL~~sG~c~af~r~tn~--~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~ 182 (322)
...+++.+..++-..++..+++ .+..+ ..+...|+.+=+..... +++ -+++| ++-|.-+++ .
T Consensus 171 g~~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d~~--~l~--s~s~D---~tiriwd~~--------~ 234 (456)
T KOG0266|consen 171 GRALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPDGS--YLL--SGSDD---KTLRIWDLK--------D 234 (456)
T ss_pred CCeEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCCCc--EEE--EecCC---ceEEEeecc--------C
Confidence 4456666688888888888887 66666 77888888887776444 553 34566 333333221 1
Q ss_pred CCcceeecccCCCCeEE---ecCCCceEEEEecCCCeEEEEeccCcEEEEEecccc--eeeEEEc-CCEEEEEEecCCCe
Q 020740 183 GFALFESESLKWPGFVE---FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN--VQEIKIS-PGIMLLIFTKASGH 256 (322)
Q Consensus 183 g~~LFe~~~L~~PgFVE---FDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~--VqEIkIS-~Gimll~~q~~~~~ 256 (322)
......+.. .|+.+|- |.+.. ..+.--.-|++.||||+++++++=.++... |--+-++ +|..++.... .
T Consensus 235 ~~~~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~-d-- 309 (456)
T KOG0266|consen 235 DGRNLKTLK-GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY-D-- 309 (456)
T ss_pred CCeEEEEec-CCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC-C--
Confidence 122334444 7888774 44544 445545569999999999999877776432 3333333 4444444422 2
Q ss_pred eEEEEEEeecCc--eeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEEccccc
Q 020740 257 VPLKILSIEDGT--VLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDVRISL 311 (322)
Q Consensus 257 iPlkIlsIedG~--~l~~f~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~ 311 (322)
-=++|.|+++|. +++.+...-.+. .+-++. +=+.+|+.--+|..+++||+.+..
T Consensus 310 ~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~ 367 (456)
T KOG0266|consen 310 GTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGK 367 (456)
T ss_pred ccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCc
Confidence 236899999999 445444222221 333332 457899999999999999999754
No 10
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=94.99 E-value=0.63 Score=48.27 Aligned_cols=169 Identities=17% Similarity=0.252 Sum_probs=105.2
Q ss_pred eeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceeecccCCCCe
Q 020740 118 AAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGF 197 (322)
Q Consensus 118 ~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~~~L~~PgF 197 (322)
.+|+-.|++.+=.+.. +.+.|+++-+| ..+++.+.| +. .|++-.++ .|+. -.+-+- |=|.
T Consensus 314 kVW~v~n~~~l~l~~~-h~~~V~~v~~~---~~~lvsgs~---d~---~v~VW~~~---~~~c------l~sl~g-H~~~ 373 (537)
T KOG0274|consen 314 KVWDVTNGACLNLLRG-HTGPVNCVQLD---EPLLVSGSY---DG---TVKVWDPR---TGKC------LKSLSG-HTGR 373 (537)
T ss_pred EEEeccCcceEEEecc-ccccEEEEEec---CCEEEEEec---Cc---eEEEEEhh---hcee------eeeecC-Ccce
Confidence 4566666666656665 88888888888 444443322 21 33333322 3332 111111 2333
Q ss_pred EE---ecCCCceEEEEecCCCeEEEEeccCc-EEEE--EecccceeeEEEcCCEEEEEEecCCCeeEEEEEEeecCceee
Q 020740 198 VE---FDDVNGKVLTYSAQDSIYKVFDLKNY-TMLY--SISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (322)
Q Consensus 198 VE---FDdvNgkilty~aq~~~YrVfdlknY-s~LY--sIsde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~ 271 (322)
|. ||.. .+++.- .-|+..|+|||.+- .|++ .....-|.++-..+.++ +-+.+.+ ++|+-|+++|+++.
T Consensus 374 V~sl~~~~~-~~~~Sg-s~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~~~~~L--vs~~aD~--~Ik~WD~~~~~~~~ 447 (537)
T KOG0274|consen 374 VYSLIVDSE-NRLLSG-SLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLLRDNFL--VSSSADG--TIKLWDAEEGECLR 447 (537)
T ss_pred EEEEEecCc-ceEEee-eeccceEeecCCchhhhhhhhcCCccccccccccccee--Eeccccc--cEEEeecccCceee
Confidence 22 2332 222222 23688999999999 6554 44445566666555554 5666666 78999999999999
Q ss_pred eeeeccccCCcchhhhhccceeEEEecCCceeEEEccccccee
Q 020740 272 SFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISLFLP 314 (322)
Q Consensus 272 ~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~~ 314 (322)
..... +..-+-|+...-|.++.-=.+..+.+||+++-+...
T Consensus 448 ~~~~~--~~~~v~~l~~~~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 448 TLEGR--HVGGVSALALGKEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred eeccC--CcccEEEeecCcceEEEEecCCeeEEEecccCchhh
Confidence 88753 456677777767888888899999999999976654
No 11
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=94.58 E-value=0.35 Score=49.96 Aligned_cols=191 Identities=19% Similarity=0.216 Sum_probs=116.0
Q ss_pred eEEeeccchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhC
Q 020740 99 IEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRG 178 (322)
Q Consensus 99 ~EIv~a~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~g 178 (322)
..|..+.+.|+..-.---.-.||..+|+.+-.+-. +.-.|-++-+|+.++.+|+.|+-.-.. .-+.+.
T Consensus 225 ld~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~G-h~kki~~v~~~~~~~~v~~aSad~~i~-----vws~~~------ 292 (506)
T KOG0289|consen 225 LDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKG-HTKKITSVKFHKDLDTVITASADEIIR-----VWSVPL------ 292 (506)
T ss_pred EeecCCCCcceecCCCCceEEEecchhhhhhhccC-cceEEEEEEeccchhheeecCCcceEE-----eecccc------
Confidence 34445556666555555556788888877776644 444677788999999999977543111 111110
Q ss_pred CCCCCCcceeecccCCCCeEEe--cCCCceEEEEecCCCeEEEEeccCcEEEEEeccc----ceeeEEEc-CCEEEEEEe
Q 020740 179 KPDAGFALFESESLKWPGFVEF--DDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK----NVQEIKIS-PGIMLLIFT 251 (322)
Q Consensus 179 k~~~g~~LFe~~~L~~PgFVEF--DdvNgkilty~aq~~~YrVfdlknYs~LYsIsde----~VqEIkIS-~Gimll~~q 251 (322)
+..| +.+..|-+=|-| -.+||.=+..-..|++|-|-|+.+=++|-..+|| ++.-.-+- ||+++.+..
T Consensus 293 ---~s~~---~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt 366 (506)
T KOG0289|consen 293 ---SSEP---TSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT 366 (506)
T ss_pred ---ccCc---cccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC
Confidence 0000 011111111111 2356777777788999999999999999999986 23333443 555543333
Q ss_pred cCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhhccceeEE-EecCCceeEEEcccccc
Q 020740 252 KASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLV-KQENENLQILDVRISLF 312 (322)
Q Consensus 252 ~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLI-KQE~~~LqI~Dl~~~~~ 312 (322)
+. + -+||+++-.+..+..|---=.+=+.|.|=| |.|-|+ --++..+++||||-.+-
T Consensus 367 ~d-~--~vkiwdlks~~~~a~Fpght~~vk~i~FsE--NGY~Lat~add~~V~lwDLRKl~n 423 (506)
T KOG0289|consen 367 PD-G--VVKIWDLKSQTNVAKFPGHTGPVKAISFSE--NGYWLATAADDGSVKLWDLRKLKN 423 (506)
T ss_pred CC-c--eEEEEEcCCccccccCCCCCCceeEEEecc--CceEEEEEecCCeEEEEEehhhcc
Confidence 32 2 379999999987776652122345667766 455554 45777799999997653
No 12
>PTZ00421 coronin; Provisional
Probab=94.35 E-value=2.8 Score=42.82 Aligned_cols=155 Identities=14% Similarity=0.166 Sum_probs=89.2
Q ss_pred cceeEEeec---cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020740 96 SKIIEIVAA---RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (322)
Q Consensus 96 S~V~EIv~a---~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~ 172 (322)
.+|.-+-+. ..+++.-..-|....||..+++.+..+.. +..-|.++-+|.....|++.| .|. .++..
T Consensus 126 ~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~-h~~~V~sla~spdG~lLatgs---~Dg----~IrIw-- 195 (493)
T PTZ00421 126 KKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC-HSDQITSLEWNLDGSLLCTTS---KDK----KLNII-- 195 (493)
T ss_pred CcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC-CCCceEEEEEECCCCEEEEec---CCC----EEEEE--
Confidence 345444443 24666667778999999999998887764 445688999998666555533 232 22222
Q ss_pred hhhHhCCCCCCCcceeecccCCC----CeEEecCCCceEEEEe---cCCCeEEEEeccCcEEEEEecccceeeEEEcCCE
Q 020740 173 EYIRRGKPDAGFALFESESLKWP----GFVEFDDVNGKVLTYS---AQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGI 245 (322)
Q Consensus 173 e~i~~gk~~~g~~LFe~~~L~~P----gFVEFDdvNgkilty~---aq~~~YrVfdlknYs~LYsIsde~VqEIkIS~Gi 245 (322)
+++.|+. +.+- -.|. .-+-|...++.++|-. .+++.+++||+++.+..+...+-+ .+.++
T Consensus 196 -D~rsg~~-----v~tl--~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d-----~~~~~ 262 (493)
T PTZ00421 196 -DPRDGTI-----VSSV--EAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLD-----QSSAL 262 (493)
T ss_pred -ECCCCcE-----EEEE--ecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccC-----CCCce
Confidence 3344432 2111 0111 2345556667787743 358999999999987555433211 12233
Q ss_pred EEEEEecCCCee--------EEEEEEeecCceeeee
Q 020740 246 MLLIFTKASGHV--------PLKILSIEDGTVLKSF 273 (322)
Q Consensus 246 mll~~q~~~~~i--------PlkIlsIedG~~l~~f 273 (322)
.+.++.+..+.+ -++++++.+|+.+...
T Consensus 263 ~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 263 FIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred EEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 333333333222 2678999999876643
No 13
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=93.96 E-value=0.42 Score=49.49 Aligned_cols=156 Identities=15% Similarity=0.234 Sum_probs=102.2
Q ss_pred ccceeEEeeccchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhh
Q 020740 95 RSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (322)
Q Consensus 95 RS~V~EIv~a~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~ 174 (322)
-.+|.++...++++|.-++.|.+.++|..|++.+=.|=. +..-|.|+++..+ .-++.-| |. .++.+-+
T Consensus 331 ~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~g-H~~~V~sl~~~~~-~~~~Sgs---------~D-~~IkvWd 398 (537)
T KOG0274|consen 331 TGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSG-HTGRVYSLIVDSE-NRLLSGS---------LD-TTIKVWD 398 (537)
T ss_pred cccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecC-CcceEEEEEecCc-ceEEeee---------ec-cceEeec
Confidence 458999999999999999999999999999987777766 7778888988876 3333322 33 4555566
Q ss_pred hHhCCCCCCCcceeecccC-CCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEeccc---ceeeEEEcCCEEEEEE
Q 020740 175 IRRGKPDAGFALFESESLK-WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK---NVQEIKISPGIMLLIF 250 (322)
Q Consensus 175 i~~gk~~~g~~LFe~~~L~-~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde---~VqEIkIS~Gimll~~ 250 (322)
+..++ ...-.|. |++.|-==...++.|.-+..|+..|+||.++++++..++.- .|.-....+..++.
T Consensus 399 l~~~~-------~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~~~~il~-- 469 (537)
T KOG0274|consen 399 LRTKR-------KCIHTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALGKEEILC-- 469 (537)
T ss_pred CCchh-------hhhhhhcCCcccccccccccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecCcceEEE--
Confidence 65542 1111222 22233111234788888888999999999999999999973 34444443222211
Q ss_pred ecCCCeeEEEEEEeecCceeeee
Q 020740 251 TKASGHVPLKILSIEDGTVLKSF 273 (322)
Q Consensus 251 q~~~~~iPlkIlsIedG~~l~~f 273 (322)
--.++ -++|.++.+|+.....
T Consensus 470 s~~~~--~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 470 SSDDG--SVKLWDLRSGTLIRTL 490 (537)
T ss_pred EecCC--eeEEEecccCchhhhh
Confidence 11122 2345588888777644
No 14
>PTZ00420 coronin; Provisional
Probab=93.33 E-value=12 Score=39.43 Aligned_cols=197 Identities=14% Similarity=0.164 Sum_probs=111.7
Q ss_pred cceeEEeec---cchhhhhhccccceeeeccccc--------EEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCce
Q 020740 96 SKIIEIVAA---RDIVFALAQSGVCAAFCRETNQ--------RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSS 164 (322)
Q Consensus 96 S~V~EIv~a---~diI~aL~~sG~c~af~r~tn~--------~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~ 164 (322)
.+|..+-+. ..+++.-..-|....||..++. .+|.+. .+..-|.++=++.....++. |+ ..|.
T Consensus 75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~-gH~~~V~sVaf~P~g~~iLa-Sg-S~Dg--- 148 (568)
T PTZ00420 75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK-GHKKKISIIDWNPMNYYIMC-SS-GFDS--- 148 (568)
T ss_pred CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee-cCCCcEEEEEECCCCCeEEE-EE-eCCC---
Confidence 456666554 2467777788899999976542 344443 34556788888876655543 21 1232
Q ss_pred eeeeeeehhhhHhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccc----ee
Q 020740 165 LRCRSTRIEYIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN----VQ 237 (322)
Q Consensus 165 LkCr~~~~e~i~~gk~~~g~~LFe~~~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~----Vq 237 (322)
.++.- +++.|+. +++ +.+++ -+.|+. +|..++....|+..++||+++-+.+.++..-. ..
T Consensus 149 -tIrIW---Dl~tg~~-----~~~---i~~~~~V~Slswsp-dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~ 215 (568)
T PTZ00420 149 -FVNIW---DIENEKR-----AFQ---INMPKKLSSLKWNI-KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTK 215 (568)
T ss_pred -eEEEE---ECCCCcE-----EEE---EecCCcEEEEEECC-CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeE
Confidence 22222 3333331 221 11222 345654 57777777789999999999999888775321 11
Q ss_pred eEEE----cCCEEEEE-EecCCCeeEEEEEEeec-CceeeeeeeccccCCcc--hhhhhccceeEEEecCCceeEEEccc
Q 020740 238 EIKI----SPGIMLLI-FTKASGHVPLKILSIED-GTVLKSFNHLLHRNKKV--DFIEQFNEKLLVKQENENLQILDVRI 309 (322)
Q Consensus 238 EIkI----S~Gimll~-~q~~~~~iPlkIlsIed-G~~l~~f~~~L~~sk~i--qFiE~f~EkLLIKQE~~~LqI~Dl~~ 309 (322)
.+-+ +++-.++. -.-..+.=.++|.++.+ ++++....+.-+ +..+ -+=+..+-.++.=-.|.++++||+..
T Consensus 216 ~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~-~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~ 294 (568)
T PTZ00420 216 NIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNA-SAPLIPHYDESTGLIYLIGKGDGNCRYYQHSL 294 (568)
T ss_pred EEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCC-ccceEEeeeCCCCCEEEEEECCCeEEEEEccC
Confidence 1211 23323232 22222333579999995 677765543222 1111 11144566677777999999999976
Q ss_pred ccc
Q 020740 310 SLF 312 (322)
Q Consensus 310 ~~~ 312 (322)
..+
T Consensus 295 ~~~ 297 (568)
T PTZ00420 295 GSI 297 (568)
T ss_pred CcE
Confidence 543
No 15
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=92.68 E-value=12 Score=37.35 Aligned_cols=114 Identities=18% Similarity=0.274 Sum_probs=78.9
Q ss_pred CCCCeEEecCCCceEEEEecCCCeEEEEeccCcE----EEEEec---ccceeeEEEc-CCEEEEEEecCCCeeEEEEEEe
Q 020740 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT----MLYSIS---DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSI 264 (322)
Q Consensus 193 ~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs----~LYsIs---de~VqEIkIS-~Gimll~~q~~~~~iPlkIlsI 264 (322)
..|.-.-||+.+=.-.+ --..+..+.||++.|. .-|.|. ..+..+|+.| +|-.+|+-...+.+ .|+|.
T Consensus 141 ~~~pi~AfDp~GLifA~-~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~---~~lDA 216 (311)
T KOG1446|consen 141 SGRPIAAFDPEGLIFAL-ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFI---YLLDA 216 (311)
T ss_pred CCCcceeECCCCcEEEE-ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcE---EEEEc
Confidence 34445566665433333 2234489999999995 677887 6788999999 57666666655543 58999
Q ss_pred ecCceeeeeeeccccCCc-chhhh----hccceeEEEecCCceeEEEcccccce
Q 020740 265 EDGTVLKSFNHLLHRNKK-VDFIE----QFNEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 265 edG~~l~~f~~~L~~sk~-iqFiE----~f~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
.+|+.+.+|.. +++.. +- ++ +=.+.+|.--+++.|-||++.+.+..
T Consensus 217 f~G~~~~tfs~--~~~~~~~~-~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v 267 (311)
T KOG1446|consen 217 FDGTVKSTFSG--YPNAGNLP-LSATFTPDSKFVLSGSDDGTIHVWNLETGKKV 267 (311)
T ss_pred cCCcEeeeEee--ccCCCCcc-eeEEECCCCcEEEEecCCCcEEEEEcCCCcEe
Confidence 99999999883 33333 22 22 22677888889999999999876653
No 16
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=92.60 E-value=0.95 Score=46.58 Aligned_cols=160 Identities=24% Similarity=0.277 Sum_probs=108.5
Q ss_pred cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeec-CCCeEEEEEeEecCCCceeeeeee----ehhhhH---
Q 020740 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNK-NNDSLITVSVYASDNFSSLRCRST----RIEYIR--- 176 (322)
Q Consensus 105 ~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk-~NdSlItvSvy~sd~fS~LkCr~~----~~e~i~--- 176 (322)
.++|+--.-+|+|.+++..+.+.+|.|-.-.++|.--.|+-. .+.++++.|.-.+ .|--.+ ++.+|.
T Consensus 187 s~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgt-----vklw~~~~e~~l~~l~gH~ 261 (459)
T KOG0272|consen 187 SKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGT-----VKLWKLSQETPLQDLEGHL 261 (459)
T ss_pred CCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCc-----eeeeccCCCcchhhhhcch
Confidence 467777889999999999999999999999999999899988 4778888664211 111111 111111
Q ss_pred --------------------------------------hCC--------------------CC---------CC-Cccee
Q 020740 177 --------------------------------------RGK--------------------PD---------AG-FALFE 188 (322)
Q Consensus 177 --------------------------------------~gk--------------------~~---------~g-~~LFe 188 (322)
+|- +| .| ..+|-
T Consensus 262 ~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L 341 (459)
T KOG0272|consen 262 ARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFL 341 (459)
T ss_pred hhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEe
Confidence 111 00 11 23343
Q ss_pred ecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc--cceeeEEEcC--CEEEEEEecCCCeeEEEEEEe
Q 020740 189 SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP--GIMLLIFTKASGHVPLKILSI 264 (322)
Q Consensus 189 ~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsd--e~VqEIkIS~--Gimll~~q~~~~~iPlkIlsI 264 (322)
.+-++-==-|+|+ .||--++-..+|++-|||||+-=++||-|++ ..|-++|.+| |-||+..--- .-++|.+=
T Consensus 342 ~gH~k~I~~V~fs-PNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD---~t~kiWs~ 417 (459)
T KOG0272|consen 342 AGHIKEILSVAFS-PNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD---NTVKIWST 417 (459)
T ss_pred cccccceeeEeEC-CCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC---cceeeecC
Confidence 3333333347776 5888888899999999999999999999986 5689999996 7786654322 23455555
Q ss_pred ecCceeeee
Q 020740 265 EDGTVLKSF 273 (322)
Q Consensus 265 edG~~l~~f 273 (322)
.|+.+++++
T Consensus 418 ~~~~~~ksL 426 (459)
T KOG0272|consen 418 RTWSPLKSL 426 (459)
T ss_pred CCcccchhh
Confidence 566555544
No 17
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=91.78 E-value=2 Score=42.59 Aligned_cols=113 Identities=18% Similarity=0.292 Sum_probs=87.6
Q ss_pred CCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEeccc--ceeeEEEcCCEEEEEEecCCCeeEEEEEEeecCceeee
Q 020740 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK--NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (322)
Q Consensus 195 PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde--~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~ 272 (322)
+--++|++.-...+| +.+|.+.+++|..+=.++=.|..+ .++-++..-.-.-+++-.++.---++.|+++|-+.+.-
T Consensus 17 i~sl~fs~~G~~lit-ss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNkylRY 95 (311)
T KOG1446|consen 17 INSLDFSDDGLLLIT-SSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKYLRY 95 (311)
T ss_pred eeEEEecCCCCEEEE-ecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCceEEE
Confidence 446899987666666 889999999999999999999888 77888888777777777776667899999999999997
Q ss_pred eeeccccCCcchhhh--hccceeEEEecCCceeEEEccccc
Q 020740 273 FNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDVRISL 311 (322)
Q Consensus 273 f~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~ 311 (322)
|. .+.+.|-.|+ .-+|.-|=--.|+.++.||||..+
T Consensus 96 F~---GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~ 133 (311)
T KOG1446|consen 96 FP---GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKK 133 (311)
T ss_pred cC---CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCC
Confidence 75 2244443333 345666667789999999999654
No 18
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=88.58 E-value=4 Score=44.93 Aligned_cols=108 Identities=21% Similarity=0.346 Sum_probs=68.8
Q ss_pred eEEecCCCc-----------eEEEEecCCCeEEEEeccCcEE--EEEeccccee--eEEEcC-CEEEEEEecCCCeeEEE
Q 020740 197 FVEFDDVNG-----------KVLTYSAQDSIYKVFDLKNYTM--LYSISDKNVQ--EIKISP-GIMLLIFTKASGHVPLK 260 (322)
Q Consensus 197 FVEFDdvNg-----------kilty~aq~~~YrVfdlknYs~--LYsIsde~Vq--EIkIS~-Gimll~~q~~~~~iPlk 260 (322)
||.|++-+. +++.-+.=||+.|-|||+.|-. =|..+ +-+| .+-+-| |-+ +..++.++.-+.
T Consensus 385 ~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P-~p~QfscvavD~sGel--V~AG~~d~F~If 461 (893)
T KOG0291|consen 385 FVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSP-EPIQFSCVAVDPSGEL--VCAGAQDSFEIF 461 (893)
T ss_pred EEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCC-CceeeeEEEEcCCCCE--EEeeccceEEEE
Confidence 788888654 3333344499999999999983 45544 4444 333332 333 456788899999
Q ss_pred EEEeecCceeeeeeeccccCCcchh--hhhccceeEEEecCCceeEEEcccc
Q 020740 261 ILSIEDGTVLKSFNHLLHRNKKVDF--IEQFNEKLLVKQENENLQILDVRIS 310 (322)
Q Consensus 261 IlsIedG~~l~~f~~~L~~sk~iqF--iE~f~EkLLIKQE~~~LqI~Dl~~~ 310 (322)
+.|.|||+.|--+. .+-.||-= +-+.++-|.=--=+..++|||+-++
T Consensus 462 vWS~qTGqllDiLs---GHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 462 VWSVQTGQLLDILS---GHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS 510 (893)
T ss_pred EEEeecCeeeehhc---CCCCcceeeEEccccCeEEeccccceEEEEEeecc
Confidence 99999999987554 22333320 2233333333334667899999887
No 19
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.49 E-value=3 Score=41.48 Aligned_cols=108 Identities=22% Similarity=0.413 Sum_probs=79.3
Q ss_pred CCceEEEEecCCCeEEEEeccCcE--EEEEe--cccceeeEEEcCCEEEEEEecCCCeeEEEEEEe-ecCceeeeee-ec
Q 020740 203 VNGKVLTYSAQDSIYKVFDLKNYT--MLYSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSI-EDGTVLKSFN-HL 276 (322)
Q Consensus 203 vNgkilty~aq~~~YrVfdlknYs--~LYsI--sde~VqEIkIS~Gimll~~q~~~~~iPlkIlsI-edG~~l~~f~-~~ 276 (322)
.+|+.+++..+++..++|++.+.+ ++..+ ....|-++++||.-=.++ ....=.-++|.++ ++|..++.++ |.
T Consensus 169 ~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~--s~s~D~tiriwd~~~~~~~~~~l~gH~ 246 (456)
T KOG0266|consen 169 PDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLL--SGSDDKTLRIWDLKDDGRNLKTLKGHS 246 (456)
T ss_pred CCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEE--EecCCceEEEeeccCCCeEEEEecCCC
Confidence 578889999999999999998887 77777 556688888885543222 2333356799999 7779989886 32
Q ss_pred cccCCcchhhhhccceeEEEecCCceeEEEccccccee
Q 020740 277 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRISLFLP 314 (322)
Q Consensus 277 L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~~ 314 (322)
..-.-+.|-.+= +.++-==.++..+|||+++.+.+.
T Consensus 247 -~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~ 282 (456)
T KOG0266|consen 247 -TYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVR 282 (456)
T ss_pred -CceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEE
Confidence 222456676665 667777799999999999966543
No 20
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=86.77 E-value=19 Score=37.00 Aligned_cols=196 Identities=17% Similarity=0.229 Sum_probs=120.3
Q ss_pred cccceeEEeec-cchhhhhh-ccccceeeecccccEE------------------------------------------E
Q 020740 94 KRSKIIEIVAA-RDIVFALA-QSGVCAAFCRETNQRI------------------------------------------C 129 (322)
Q Consensus 94 kRS~V~EIv~a-~diI~aL~-~sG~c~af~r~tn~~i------------------------------------------C 129 (322)
-|++|.-+++- ...+++++ ..+.-.+||.+||+.. |
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ 186 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCI 186 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhheeHHHHHHHH
Confidence 57777777765 34445555 5677777777776541 2
Q ss_pred EecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceee-cccCCCCeEEecCCC--ce
Q 020740 130 FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-ESLKWPGFVEFDDVN--GK 206 (322)
Q Consensus 130 ~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~-~~L~~PgFVEFDdvN--gk 206 (322)
-.|..+++.|-|+|+=..+|.|...| .|. -|+.-+.+-| |+- .--.||..|--=++| |.
T Consensus 187 ks~~gh~h~vS~V~f~P~gd~ilS~s---rD~------------tik~We~~tg---~cv~t~~~h~ewvr~v~v~~DGt 248 (406)
T KOG0295|consen 187 KSLIGHEHGVSSVFFLPLGDHILSCS---RDN------------TIKAWECDTG---YCVKTFPGHSEWVRMVRVNQDGT 248 (406)
T ss_pred HHhcCcccceeeEEEEecCCeeeecc---ccc------------ceeEEecccc---eeEEeccCchHhEEEEEecCCee
Confidence 35778888999999999987776543 122 1122222222 221 112345555544444 78
Q ss_pred EEEEecCCCeEEEEeccCcEEEEEecc-cceee-EEEcCC----------------EEEEEEecCCCeeEEEEEEeecCc
Q 020740 207 VLTYSAQDSIYKVFDLKNYTMLYSISD-KNVQE-IKISPG----------------IMLLIFTKASGHVPLKILSIEDGT 268 (322)
Q Consensus 207 ilty~aq~~~YrVfdlknYs~LYsIsd-e~VqE-IkIS~G----------------imll~~q~~~~~iPlkIlsIedG~ 268 (322)
|++.+..+-..+||...+-++.-++-+ |++-| |.+-|. .++...-+-. -+|+.++.||.
T Consensus 249 i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDk---tIk~wdv~tg~ 325 (406)
T KOG0295|consen 249 IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDK---TIKIWDVSTGM 325 (406)
T ss_pred EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccc---eEEEEeccCCe
Confidence 999999999999999999965444332 22222 222211 2322222221 36999999999
Q ss_pred eeeeeeeccccCCcchhhhhccceeEEEecCCceeEEEccccc
Q 020740 269 VLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISL 311 (322)
Q Consensus 269 ~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~ 311 (322)
+|..+.-..-==+.+- +-.-+-||+==-+|+.|++||+.|..
T Consensus 326 cL~tL~ghdnwVr~~a-f~p~Gkyi~ScaDDktlrvwdl~~~~ 367 (406)
T KOG0295|consen 326 CLFTLVGHDNWVRGVA-FSPGGKYILSCADDKTLRVWDLKNLQ 367 (406)
T ss_pred EEEEEecccceeeeeE-EcCCCeEEEEEecCCcEEEEEeccce
Confidence 9998863222223333 33457788888899999999999864
No 21
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=86.17 E-value=39 Score=33.80 Aligned_cols=194 Identities=18% Similarity=0.282 Sum_probs=116.6
Q ss_pred eeEEeeccchhhhhhcc--ccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhh
Q 020740 98 IIEIVAARDIVFALAQS--GVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI 175 (322)
Q Consensus 98 V~EIv~a~diI~aL~~s--G~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i 175 (322)
|...+...|==+||+-| |.-+.+|..+|+-.+-+ ..+-..|-|+=+|.+|..+++-|.- -+|+--.|-
T Consensus 66 v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f-~GH~~dVlsva~s~dn~qivSGSrD-----kTiklwnt~---- 135 (315)
T KOG0279|consen 66 VSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRF-VGHTKDVLSVAFSTDNRQIVSGSRD-----KTIKLWNTL---- 135 (315)
T ss_pred ecceEEccCCceEEeccccceEEEEEecCCcEEEEE-EecCCceEEEEecCCCceeecCCCc-----ceeeeeeec----
Confidence 33444444555555544 88899999999888855 3555567789999999999885532 233332221
Q ss_pred HhCCCCCCCccee--ecc-cCCCCeEEecCCC-ceEEEEecCCCeEEEEeccCcEEEEEe--cccceeeEEEc-CCEEEE
Q 020740 176 RRGKPDAGFALFE--SES-LKWPGFVEFDDVN-GKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKIS-PGIMLL 248 (322)
Q Consensus 176 ~~gk~~~g~~LFe--~~~-L~~PgFVEFDdvN-gkilty~aq~~~YrVfdlknYs~LYsI--sde~VqEIkIS-~Gimll 248 (322)
|.-.++ .++ -.|=--|-|-+.+ .-++.--..|++.|||||.|.+..=.. ....+--+-+| ||.+ .
T Consensus 136 -------g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGsl-c 207 (315)
T KOG0279|consen 136 -------GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSL-C 207 (315)
T ss_pred -------ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCE-E
Confidence 100111 122 4566667777774 334444456899999999998844332 23345566777 4444 4
Q ss_pred EEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEEccccccee
Q 020740 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISLFLP 314 (322)
Q Consensus 249 ~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~~ 314 (322)
..-+.... +.|.++-.|+.+.++.+..+ =.-+-|.+ |+|-|----+++++|||+-+...++
T Consensus 208 asGgkdg~--~~LwdL~~~k~lysl~a~~~-v~sl~fsp--nrywL~~at~~sIkIwdl~~~~~v~ 268 (315)
T KOG0279|consen 208 ASGGKDGE--AMLWDLNEGKNLYSLEAFDI-VNSLCFSP--NRYWLCAATATSIKIWDLESKAVVE 268 (315)
T ss_pred ecCCCCce--EEEEEccCCceeEeccCCCe-EeeEEecC--CceeEeeccCCceEEEeccchhhhh
Confidence 44444443 45667777777665543211 11122333 6788888888899999998776543
No 22
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=85.81 E-value=13 Score=37.22 Aligned_cols=54 Identities=20% Similarity=0.208 Sum_probs=36.1
Q ss_pred EecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceee
Q 020740 130 FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES 189 (322)
Q Consensus 130 ~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~ 189 (322)
.||..|.+-|-+|=|...+.-|++ |. =+ .+|.-+.++... .++++.-+.||-..
T Consensus 7 ~l~npP~d~IS~v~f~~~~~~LLv-ss---WD-gslrlYdv~~~~-l~~~~~~~~plL~c 60 (323)
T KOG1036|consen 7 ELENPPEDGISSVKFSPSSSDLLV-SS---WD-GSLRLYDVPANS-LKLKFKHGAPLLDC 60 (323)
T ss_pred ccCCCChhceeeEEEcCcCCcEEE-Ee---cc-CcEEEEeccchh-hhhheecCCceeee
Confidence 578888999999988844444444 43 23 567777777663 45677777777654
No 23
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=84.40 E-value=11 Score=37.15 Aligned_cols=174 Identities=20% Similarity=0.278 Sum_probs=104.8
Q ss_pred cceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCcee---eeeeeehhhhHhCCCCCCCcceeeccc
Q 020740 116 VCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSL---RCRSTRIEYIRRGKPDAGFALFESESL 192 (322)
Q Consensus 116 ~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~L---kCr~~~~e~i~~gk~~~g~~LFe~~~L 192 (322)
.|..||-.|||-+=-+ +.+.-.|-++=||. +|=|++| +|++ +++ -||+-+.|-|+- ++ -|..
T Consensus 82 ~v~vwDV~TGkv~Rr~-rgH~aqVNtV~fNe--esSVv~S--gsfD-~s~r~wDCRS~s~ePiQi--ld----ea~D--- 146 (307)
T KOG0316|consen 82 AVQVWDVNTGKVDRRF-RGHLAQVNTVRFNE--ESSVVAS--GSFD-SSVRLWDCRSRSFEPIQI--LD----EAKD--- 146 (307)
T ss_pred eEEEEEcccCeeeeec-ccccceeeEEEecC--cceEEEe--cccc-ceeEEEEcccCCCCccch--hh----hhcC---
Confidence 4678899999876544 45666778888986 5666644 6777 455 477766554322 00 0111
Q ss_pred CCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEc-CCEEEEEEecCCCeeEEEEEEeecCceee
Q 020740 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (322)
Q Consensus 193 ~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~l~ 271 (322)
|-.-- |+++--+..-.-||+||+|||+.=.+.----..-|.-+.+| +|-.+|.- --.+ .++|||=+||+.|+
T Consensus 147 ---~V~Si-~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~-~l~s--tlrLlDk~tGklL~ 219 (307)
T KOG0316|consen 147 ---GVSSI-DVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLAS-SLDS--TLRLLDKETGKLLK 219 (307)
T ss_pred ---ceeEE-EecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEe-eccc--eeeecccchhHHHH
Confidence 11112 34444444455699999999998776655455667777787 34443332 2222 36899999999999
Q ss_pred eeeeccccCCc--chh-hhhccceeEEEecCCceeEEEcccccce
Q 020740 272 SFNHLLHRNKK--VDF-IEQFNEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 272 ~f~~~L~~sk~--iqF-iE~f~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
+.+- |.|.+ +|= +-|-.+-..=--|+.-.-.|||-+..++
T Consensus 220 sYkG--hkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~ 262 (307)
T KOG0316|consen 220 SYKG--HKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQI 262 (307)
T ss_pred Hhcc--cccceeeeeeeecccceeEEeccCCceEEEEEeccceee
Confidence 8873 22332 220 1222233333448888899999887654
No 24
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=83.43 E-value=29 Score=35.73 Aligned_cols=104 Identities=12% Similarity=0.218 Sum_probs=70.6
Q ss_pred CceEEEEecCCCeEEEEeccCcEEEEEecc--cceeeEEEc-CCEEEEEEecCCCeeEEEEEEeecCceeeeee------
Q 020740 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFN------ 274 (322)
Q Consensus 204 Ngkilty~aq~~~YrVfdlknYs~LYsIsd--e~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~------ 274 (322)
+.-|+. +.-|.+||.|+..+=.++|.... |=|.=|++. ||.+++ --.+.--+++....|+++...+.
T Consensus 205 gd~ilS-~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~A---s~s~dqtl~vW~~~t~~~k~~lR~hEh~v 280 (406)
T KOG0295|consen 205 GDHILS-CSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIA---SCSNDQTLRVWVVATKQCKAELREHEHPV 280 (406)
T ss_pred CCeeee-cccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEE---ecCCCceEEEEEeccchhhhhhhccccce
Confidence 444544 45688999999999998888764 567888887 777643 23444567888889985544331
Q ss_pred ---eccccCCcchhhhhccc-----eeEEEecCCceeEEEccccc
Q 020740 275 ---HLLHRNKKVDFIEQFNE-----KLLVKQENENLQILDVRISL 311 (322)
Q Consensus 275 ---~~L~~sk~iqFiE~f~E-----kLLIKQE~~~LqI~Dl~~~~ 311 (322)
..-|-..-.+--|.-++ .|..+-.|..++|||+....
T Consensus 281 Eci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~ 325 (406)
T KOG0295|consen 281 ECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGM 325 (406)
T ss_pred EEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCe
Confidence 11122223333466676 88888999999999998754
No 25
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=82.83 E-value=3.8 Score=43.01 Aligned_cols=152 Identities=22% Similarity=0.353 Sum_probs=95.3
Q ss_pred hhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEE------EEeEecCCCceeeeeeee-----hh---
Q 020740 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLIT------VSVYASDNFSSLRCRSTR-----IE--- 173 (322)
Q Consensus 108 I~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlIt------vSvy~sd~fS~LkCr~~~-----~e--- 173 (322)
+++--..|--||||-.|++++|+||.. |-||.+=|=. |+.+|- |=+|..+. .-|+|--.- .+
T Consensus 144 lllgGrKGHlAa~Dw~t~~L~~Ei~v~--Etv~Dv~~LH-neq~~AVAQK~y~yvYD~~G-tElHClk~~~~v~rLeFLP 219 (545)
T KOG1272|consen 144 LLLGGRKGHLAAFDWVTKKLHFEINVM--ETVRDVTFLH-NEQFFAVAQKKYVYVYDNNG-TELHCLKRHIRVARLEFLP 219 (545)
T ss_pred EEecCCccceeeeecccceeeeeeehh--hhhhhhhhhc-chHHHHhhhhceEEEecCCC-cEEeehhhcCchhhhcccc
Confidence 344456788999999999999999974 6677664432 233332 12677777 778884322 22
Q ss_pred --hhHhCCCCCCCcceeecc--------------------cCCCCeEEecCCCceEEEEecC------------------
Q 020740 174 --YIRRGKPDAGFALFESES--------------------LKWPGFVEFDDVNGKVLTYSAQ------------------ 213 (322)
Q Consensus 174 --~i~~gk~~~g~~LFe~~~--------------------L~~PgFVEFDdvNgkilty~aq------------------ 213 (322)
+|..+--++|+.-..+++ --|-+-+-.-..||.|-.++|.
T Consensus 220 yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~si 299 (545)
T KOG1272|consen 220 YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSI 299 (545)
T ss_pred hhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceE
Confidence 333333333333332211 1123334444445555444444
Q ss_pred --------------CCeEEEEeccCcEEEEEecc-cceeeEEEcCCEEEEEEecCCCeeEEEEEE
Q 020740 214 --------------DSIYKVFDLKNYTMLYSISD-KNVQEIKISPGIMLLIFTKASGHVPLKILS 263 (322)
Q Consensus 214 --------------~~~YrVfdlknYs~LYsIsd-e~VqEIkIS~Gimll~~q~~~~~iPlkIls 263 (322)
|...|||||++|..|-++.- -..+..-+|.--||+.-.++|-+|--..++
T Consensus 300 Av~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~SqkglLA~~~G~~v~iw~d~~~ 364 (545)
T KOG1272|consen 300 AVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGLLALSYGDHVQIWKDALK 364 (545)
T ss_pred EECCCCcEEeecccccceeEeeeccccccceeecCCCccccccccccceeeecCCeeeeehhhhc
Confidence 88889999999998777765 667888999988989999888766555444
No 26
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=81.81 E-value=9.1 Score=41.94 Aligned_cols=195 Identities=23% Similarity=0.286 Sum_probs=120.9
Q ss_pred chhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEec-------CCCceee------eeeeeh
Q 020740 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYAS-------DNFSSLR------CRSTRI 172 (322)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~s-------d~fS~Lk------Cr~~~~ 172 (322)
+.+++-+.|+--+.|+.-| .-|.|=+.++|+|-||---..++-|+++|=-.| ++|+..- |++-++
T Consensus 337 ~~laVATNs~~lr~y~~~~--~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~sv 414 (775)
T KOG0319|consen 337 SHLAVATNSPELRLYTLPT--SYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSV 414 (775)
T ss_pred ceEEEEeCCCceEEEecCC--CceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccccccc
Confidence 5667778888888886543 478899999999999874444455555441111 2222222 222222
Q ss_pred hhhHhCCCCCCCcceeecc----c---CCCC---------e---------------EEecCCCceEEEEecCCCeEEEEe
Q 020740 173 EYIRRGKPDAGFALFESES----L---KWPG---------F---------------VEFDDVNGKVLTYSAQDSIYKVFD 221 (322)
Q Consensus 173 e~i~~gk~~~g~~LFe~~~----L---~~Pg---------F---------------VEFDdvNgkilty~aq~~~YrVfd 221 (322)
-.+---+ .+.+.|-+++ + ..|+ | |+. ..|.++++--.||.+-|+|+
T Consensus 415 gava~~~--~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vai-a~ndkLiAT~SqDktaKiW~ 491 (775)
T KOG0319|consen 415 GAVAGSK--LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAI-APNDKLIATGSQDKTAKIWD 491 (775)
T ss_pred ceeeecc--cCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEe-cCCCceEEecccccceeeec
Confidence 2221111 1123333211 1 1122 1 111 24677888888999999999
Q ss_pred ccCcEEEEEecc--cceeeEEEcCC--EEEEEEecCCCeeEEEEEEeecCceeeeee-eccccCCcchhhhhccceeEEE
Q 020740 222 LKNYTMLYSISD--KNVQEIKISPG--IMLLIFTKASGHVPLKILSIEDGTVLKSFN-HLLHRNKKVDFIEQFNEKLLVK 296 (322)
Q Consensus 222 lknYs~LYsIsd--e~VqEIkIS~G--imll~~q~~~~~iPlkIlsIedG~~l~~f~-~~L~~sk~iqFiE~f~EkLLIK 296 (322)
+.+-..+-.+|. ..|=.+++|+. +| ++ .++=.-+||.+|+|+.+++.|. |. -.=.+.+|+- -+++|+=-
T Consensus 492 le~~~l~~vLsGH~RGvw~V~Fs~~dq~l-aT---~SgD~TvKIW~is~fSClkT~eGH~-~aVlra~F~~-~~~qliS~ 565 (775)
T KOG0319|consen 492 LEQLRLLGVLSGHTRGVWCVSFSKNDQLL-AT---CSGDKTVKIWSISTFSCLKTFEGHT-SAVLRASFIR-NGKQLISA 565 (775)
T ss_pred ccCceEEEEeeCCccceEEEEecccccee-Ee---ccCCceEEEEEeccceeeeeecCcc-ceeEeeeeee-CCcEEEec
Confidence 999999888885 56888999976 43 33 3455678999999999999987 32 2223556663 24444444
Q ss_pred ecCCceeEEEccccc
Q 020740 297 QENENLQILDVRISL 311 (322)
Q Consensus 297 QE~~~LqI~Dl~~~~ 311 (322)
--+.-++|||+-+.+
T Consensus 566 ~adGliKlWnikt~e 580 (775)
T KOG0319|consen 566 GADGLIKLWNIKTNE 580 (775)
T ss_pred cCCCcEEEEeccchh
Confidence 477889999988765
No 27
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=80.81 E-value=32 Score=28.82 Aligned_cols=177 Identities=20% Similarity=0.343 Sum_probs=105.5
Q ss_pred cccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceeecccC
Q 020740 114 SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLK 193 (322)
Q Consensus 114 sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~~~L~ 193 (322)
.|....|+..+++.+..++. +..-|.++=++.++. .+++| .+.+ ..+.+. ++..|+ ........
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~-~~~~~--~~~d-~~i~~w-----d~~~~~------~~~~~~~~ 240 (466)
T COG2319 177 DGTIKLWDLRTGKPLSTLAG-HTDPVSSLAFSPDGG-LLIAS--GSSD-GTIRLW-----DLSTGK------LLRSTLSG 240 (466)
T ss_pred CCceEEEEcCCCceEEeecc-CCCceEEEEEcCCcc-eEEEE--ecCC-CcEEEE-----ECCCCc------EEeeecCC
Confidence 79999999998888988888 555566677775555 45544 2333 223322 111111 11111222
Q ss_pred CCCe-E-EecCCCceEEEEecCCCeEEEEeccCcEE-EEEe--cccceeeEEEcC-CEEEEEEecCCCeeEEEEEEeecC
Q 020740 194 WPGF-V-EFDDVNGKVLTYSAQDSIYKVFDLKNYTM-LYSI--SDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDG 267 (322)
Q Consensus 194 ~PgF-V-EFDdvNgkilty~aq~~~YrVfdlknYs~-LYsI--sde~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG 267 (322)
++.. + .|...+ ..++-...++.+++||++.... +..+ .++.+..+.+.| +-.++. ...... +++.++.++
T Consensus 241 ~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~d~~--~~~~~~~~~ 316 (466)
T COG2319 241 HSDSVVSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS-GSSDGT--VRLWDLETG 316 (466)
T ss_pred CCcceeEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE-eeCCCc--EEEEEcCCC
Confidence 2222 1 565555 5555667899999999997664 3333 257888888887 444444 333333 666688888
Q ss_pred ceeeeeeecccc--CCcchhhhhccceeEEE-ecCCceeEEEccccc
Q 020740 268 TVLKSFNHLLHR--NKKVDFIEQFNEKLLVK-QENENLQILDVRISL 311 (322)
Q Consensus 268 ~~l~~f~~~L~~--sk~iqFiE~f~EkLLIK-QE~~~LqI~Dl~~~~ 311 (322)
..........|. -..+.| ..-++.+.+- +.+..+++|++....
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 317 KLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred ceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCc
Confidence 877766522222 244444 2113667777 677888999998876
No 28
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=79.56 E-value=4.4 Score=42.38 Aligned_cols=119 Identities=21% Similarity=0.265 Sum_probs=83.3
Q ss_pred cccCCCC------eEEecCCCceEEEEecCCCeEEEEeccC-cEEE--EEecccceeeEEEc-CCEEEEEEecCCCeeEE
Q 020740 190 ESLKWPG------FVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTML--YSISDKNVQEIKIS-PGIMLLIFTKASGHVPL 259 (322)
Q Consensus 190 ~~L~~Pg------FVEFDdvNgkilty~aq~~~YrVfdlkn-Ys~L--YsIsde~VqEIkIS-~Gimll~~q~~~~~iPl 259 (322)
-+..|+| ++.|-...|..+.-...|+..++|+..+ +.|| |.--.+-|.+++.+ .|.-. .-+.-=-.+
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~f---LS~sfD~~l 282 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSF---LSASFDRFL 282 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCee---eeeecceee
Confidence 4556666 4567777889999889999999999998 7766 77778889999888 34332 223333578
Q ss_pred EEEEeecCceeeeeeeccccCCcchhhhhcc-ceeEEEecCCceeEEEcccccce
Q 020740 260 KILSIEDGTVLKSFNHLLHRNKKVDFIEQFN-EKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 260 kIlsIedG~~l~~f~~~L~~sk~iqFiE~f~-EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
||.|.|||+++-+|... ..---+. .+.-| --.|+---++.++-||+|+.+|+
T Consensus 283 KlwDtETG~~~~~f~~~-~~~~cvk-f~pd~~n~fl~G~sd~ki~~wDiRs~kvv 335 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHLD-KVPTCVK-FHPDNQNIFLVGGSDKKIRQWDIRSGKVV 335 (503)
T ss_pred eeeccccceEEEEEecC-CCceeee-cCCCCCcEEEEecCCCcEEEEeccchHHH
Confidence 99999999999988631 1011111 11222 23455567889999999999975
No 29
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=79.51 E-value=38 Score=28.88 Aligned_cols=190 Identities=13% Similarity=0.119 Sum_probs=103.1
Q ss_pred ceeEEeeccchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhH
Q 020740 97 KIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIR 176 (322)
Q Consensus 97 ~V~EIv~a~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~ 176 (322)
.+...+..+..+++....|.-.++|..||+.+-.... ++++--.... .++.+++++ .++ .+++++ +.
T Consensus 28 ~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~--~~~~v~v~~---~~~----~l~~~d---~~ 94 (238)
T PF13360_consen 28 PVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV--DGGRVYVGT---SDG----SLYALD---AK 94 (238)
T ss_dssp EEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE--ETTEEEEEE---TTS----EEEEEE---TT
T ss_pred ccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee--ccccccccc---cee----eeEecc---cC
Confidence 3444555677888888999999999999999987776 3332222222 234555543 333 333332 22
Q ss_pred hCCCCCCCcceee-cc------cCC-------CCeEEecCCCceEEEEecCCCeEEEEeccCcE----EEEEecccceee
Q 020740 177 RGKPDAGFALFES-ES------LKW-------PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT----MLYSISDKNVQE 238 (322)
Q Consensus 177 ~gk~~~g~~LFe~-~~------L~~-------PgFVEFDdvNgkilty~aq~~~YrVfdlknYs----~LYsIsde~VqE 238 (322)
-|++ +.+. .. +.. -+.+=+...+|.+.++++.+|.- +|.+..-. .-++........
T Consensus 95 tG~~-----~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~~~~~~~ 168 (238)
T PF13360_consen 95 TGKV-----LWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKL-LWKYPVGEPRGSSPISSFSDINGS 168 (238)
T ss_dssp TSCE-----EEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEE-EEEEESSTT-SS--EEEETTEEEE
T ss_pred Ccce-----eeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcE-EEEeecCCCCCCcceeeecccccc
Confidence 2332 3331 10 111 22333333466666666666533 45443211 111111122455
Q ss_pred EEEcCCEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEEcccccce
Q 020740 239 IKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 239 IkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
.-+.+| .+.+...... -+.+ ++++|+.+-+.. ++. ..-....-++.|++--++..|.+||+.+-++.
T Consensus 169 ~~~~~~-~v~~~~~~g~--~~~~-d~~tg~~~w~~~--~~~--~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 169 PVISDG-RVYVSSGDGR--VVAV-DLATGEKLWSKP--ISG--IYSLPSVDGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp EECCTT-EEEEECCTSS--EEEE-ETTTTEEEEEEC--SS---ECECEECCCTEEEEEETTTEEEEEETTTTEEE
T ss_pred eEEECC-EEEEEcCCCe--EEEE-ECCCCCEEEEec--CCC--ccCCceeeCCEEEEEeCCCEEEEEECCCCCEE
Confidence 666677 4444444443 3555 999999775322 222 11123456778888878999999999998764
No 30
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=79.27 E-value=1.8 Score=44.26 Aligned_cols=88 Identities=15% Similarity=0.356 Sum_probs=56.7
Q ss_pred cCCCeEEEEeccCcEEEEEecccceeeEEEcCCEEEEEEec-----CCCeeEEEEEEeecCceeeeeeeccccCCcchhh
Q 020740 212 AQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTK-----ASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFI 286 (322)
Q Consensus 212 aq~~~YrVfdlknYs~LYsIsde~VqEIkIS~Gimll~~q~-----~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFi 286 (322)
.-|.+.+|||-++|+++|.+..-. +.++-|=+.. .++---+.|.|.+||++++...| +..-+==+
T Consensus 214 lrDnTikiWD~n~~~c~~~L~GHt-------GSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlih---HceaVLhl 283 (499)
T KOG0281|consen 214 LRDNTIKIWDKNSLECLKILTGHT-------GSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIH---HCEAVLHL 283 (499)
T ss_pred cccCceEEeccccHHHHHhhhcCC-------CcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhh---hcceeEEE
Confidence 449999999999999999998531 2222221111 11223468999999999996542 22222113
Q ss_pred hhccceeEE-EecCCceeEEEcccc
Q 020740 287 EQFNEKLLV-KQENENLQILDVRIS 310 (322)
Q Consensus 287 E~f~EkLLI-KQE~~~LqI~Dl~~~ 310 (322)
.|++.++| --++.++.+|||-+.
T Consensus 284 -rf~ng~mvtcSkDrsiaVWdm~sp 307 (499)
T KOG0281|consen 284 -RFSNGYMVTCSKDRSIAVWDMASP 307 (499)
T ss_pred -EEeCCEEEEecCCceeEEEeccCc
Confidence 34555555 459999999999774
No 31
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=78.84 E-value=26 Score=35.12 Aligned_cols=89 Identities=16% Similarity=0.293 Sum_probs=66.1
Q ss_pred CCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCC-----CcceeecccCCCCeEEecCCCceE
Q 020740 133 VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG-----FALFESESLKWPGFVEFDDVNGKV 207 (322)
Q Consensus 133 ~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g-----~~LFe~~~L~~PgFVEFDdvNgki 207 (322)
.++..-||-+|=.--.-|++. ++.+.+=+. -.++.+.+..+....+ .+...+..+.---.+||||+|.+.
T Consensus 9 ~g~~dTlHyvWs~~g~Ptvll--~~T~~~~s~---l~VnW~~lls~~~~~ai~v~p~~v~ys~A~vf~kL~EfnD~ndta 83 (350)
T PF15065_consen 9 VGSNDTLHYVWSSIGAPTVLL--AHTNSPSSA---LNVNWSKLLSPNPSGAITVEPKPVQYSSALVFNKLIEFNDVNDTA 83 (350)
T ss_pred eCCCCeEEEEEecCCCCEEEE--EEcCCCccc---EEeeHHHhcCCCCCCCEEEccCCceEEEeeeeeeheeeeCCCCcc
Confidence 356678999998877889998 555555233 4577888888764333 223444556667889999999999
Q ss_pred EEEecCCCeEEEEeccCcE
Q 020740 208 LTYSAQDSIYKVFDLKNYT 226 (322)
Q Consensus 208 lty~aq~~~YrVfdlknYs 226 (322)
..--+....|++.||.+++
T Consensus 84 ~~~~~~~~~~~~y~l~~f~ 102 (350)
T PF15065_consen 84 NISTPPGKFYPPYDLSNFS 102 (350)
T ss_pred cccCCCCCceeeeehhhce
Confidence 9876788999999999987
No 32
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=77.86 E-value=10 Score=39.08 Aligned_cols=110 Identities=19% Similarity=0.280 Sum_probs=84.5
Q ss_pred cccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcCCEEEEEEecCCCeeEEEEEEeecC
Q 020740 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDG 267 (322)
Q Consensus 190 ~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG 267 (322)
.-|.|=--|.+|..|.=-.| .+.|++.++||+.+=.+.-.+. -+.|.++++|+-+=-|+.-.-... +|-.|+|+-
T Consensus 149 gHlgWVr~vavdP~n~wf~t-gs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~--VKCwDLe~n 225 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFAT-GSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQ--VKCWDLEYN 225 (460)
T ss_pred hccceEEEEeeCCCceeEEe-cCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCe--eEEEechhh
Confidence 55677777899999876555 6679999999999999999988 578899999988877776666554 478888888
Q ss_pred ceeeee--------eeccccCCcchhhhhccceeEEEecCCceeEEEccccc
Q 020740 268 TVLKSF--------NHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISL 311 (322)
Q Consensus 268 ~~l~~f--------~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~ 311 (322)
+.+... ++.||++-+ -|+---.|+..++||+|.+.
T Consensus 226 kvIR~YhGHlS~V~~L~lhPTld---------vl~t~grDst~RvWDiRtr~ 268 (460)
T KOG0285|consen 226 KVIRHYHGHLSGVYCLDLHPTLD---------VLVTGGRDSTIRVWDIRTRA 268 (460)
T ss_pred hhHHHhccccceeEEEeccccce---------eEEecCCcceEEEeeecccc
Confidence 877633 445565544 34555689999999999864
No 33
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=76.99 E-value=61 Score=29.83 Aligned_cols=114 Identities=12% Similarity=0.162 Sum_probs=69.4
Q ss_pred CCCCeEEecCCCceEEEEecCCCeEEEEeccCcE----EEEEecc-cceeeEEEcC-CEEEEEEecCCCeeEEEEEEeec
Q 020740 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT----MLYSISD-KNVQEIKISP-GIMLLIFTKASGHVPLKILSIED 266 (322)
Q Consensus 193 ~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs----~LYsIsd-e~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIed 266 (322)
.+|.++-||..+..+.+.+..++...|||+.+.. .+-.+.. .+...+.++| |-.+++-.-..+. +.++++.+
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~--v~v~d~~~ 157 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDR--IRLFTLSD 157 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCE--EEEEEECC
Confidence 4799999998888888888779999999997432 3333322 4556677774 4454444444443 57788876
Q ss_pred -Cceeeee--eeccccCC---cchhhhhccceeEEEec-CCceeEEEccc
Q 020740 267 -GTVLKSF--NHLLHRNK---KVDFIEQFNEKLLVKQE-NENLQILDVRI 309 (322)
Q Consensus 267 -G~~l~~f--~~~L~~sk---~iqFiE~f~EkLLIKQE-~~~LqI~Dl~~ 309 (322)
|+..... ....+... .+.|- .=+.++++=-| +..+.+||+..
T Consensus 158 ~g~l~~~~~~~~~~~~g~~p~~~~~~-pdg~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 158 DGHLVAQEPAEVTTVEGAGPRHMVFH-PNQQYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred CCcccccCCCceecCCCCCCceEEEC-CCCCEEEEEecCCCEEEEEEEeC
Confidence 4332110 00011111 13322 23457877766 88999999973
No 34
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=76.56 E-value=40 Score=33.76 Aligned_cols=103 Identities=16% Similarity=0.233 Sum_probs=64.0
Q ss_pred ceEEEEecCCCeEEEEeccCcEEEEEeccc-cee--eEEEcCCEEEEEEecCC-CeeEEEEEEeecCc-------eeeee
Q 020740 205 GKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQ--EIKISPGIMLLIFTKAS-GHVPLKILSIEDGT-------VLKSF 273 (322)
Q Consensus 205 gkilty~aq~~~YrVfdlknYs~LYsIsde-~Vq--EIkIS~Gimll~~q~~~-~~iPlkIlsIedG~-------~l~~f 273 (322)
...+|= +.|.+-|.||.++=+.|+.+.-. -|. |+-.++.+.|+.....- ..=-+.+++|++-. ++..+
T Consensus 65 ~~liTG-SAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI 143 (327)
T KOG0643|consen 65 KHLITG-SADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKI 143 (327)
T ss_pred ceeeec-cccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEe
Confidence 344443 33667899999999999998633 233 44444566655554433 44456778887433 22222
Q ss_pred eeccccCCc-chhhhhccceeEEEecCCceeEEEcccc
Q 020740 274 NHLLHRNKK-VDFIEQFNEKLLVKQENENLQILDVRIS 310 (322)
Q Consensus 274 ~~~L~~sk~-iqFiE~f~EkLLIKQE~~~LqI~Dl~~~ 310 (322)
. -|-+|. .--.-.++|+|+---|+.+|.+||++|.
T Consensus 144 ~--t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g 179 (327)
T KOG0643|consen 144 P--TPDSKITSALWGPLGETIIAGHEDGSISIYDARTG 179 (327)
T ss_pred c--CCccceeeeeecccCCEEEEecCCCcEEEEEcccC
Confidence 1 111111 1124567899999999999999999984
No 35
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=75.36 E-value=21 Score=38.28 Aligned_cols=159 Identities=16% Similarity=0.162 Sum_probs=89.4
Q ss_pred EecCCCCceEEEEeeecCCCeEEEEEe------EecCCCceeeeeeee--hhhhHhCCCCCCCcceeecccCCCCeEEec
Q 020740 130 FLNVTADEVIRSLFYNKNNDSLITVSV------YASDNFSSLRCRSTR--IEYIRRGKPDAGFALFESESLKWPGFVEFD 201 (322)
Q Consensus 130 ~lN~s~dEvIrSiFyNk~NdSlItvSv------y~sd~fS~LkCr~~~--~e~i~~gk~~~g~~LFe~~~L~~PgFVEFD 201 (322)
.|-|+..-+|+|+=|.-..+.|..||- +--|.|.-+.|---. |.++..- +|-.-.-++ .||-
T Consensus 208 ~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nT---KGHia~lt~-------g~wh 277 (641)
T KOG0772|consen 208 QLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNT---KGHIAELTC-------GCWH 277 (641)
T ss_pred ccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhcc---CCceeeeec-------cccc
Confidence 356777779999999999999999883 445666666664433 3333332 221111111 2445
Q ss_pred CCCceEEEEecCCCeEEEEeccCcE-EEEEecccceeeEEEcCCEEEEEEecCCCe---------------------eEE
Q 020740 202 DVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISDKNVQEIKISPGIMLLIFTKASGH---------------------VPL 259 (322)
Q Consensus 202 dvNgkilty~aq~~~YrVfdlknYs-~LYsIsde~VqEIkIS~Gimll~~q~~~~~---------------------iPl 259 (322)
.-|.....-++.||+.|+||+.|.. .+=.|..+--+--|+.+-.- .+.+.... .-+
T Consensus 278 P~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC--~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~ 355 (641)
T KOG0772|consen 278 PDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSC--AWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVM 355 (641)
T ss_pred cCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceee--ecCCCcchhhhcccCCceeeeecCCcccccce
Confidence 5565555557899999999999987 22233322222222221111 11111111 112
Q ss_pred EEEEeecC-ceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEEccccc
Q 020740 260 KILSIEDG-TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISL 311 (322)
Q Consensus 260 kIlsIedG-~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~ 311 (322)
++=+.|++ +.+-++.+ -+-+-+||=.-++..|++||||+++
T Consensus 356 ~vk~AH~~g~~Itsi~F-----------S~dg~~LlSRg~D~tLKvWDLrq~k 397 (641)
T KOG0772|consen 356 KVKDAHLPGQDITSISF-----------SYDGNYLLSRGFDDTLKVWDLRQFK 397 (641)
T ss_pred EeeeccCCCCceeEEEe-----------ccccchhhhccCCCceeeeeccccc
Confidence 33334432 33333332 2346677888899999999999975
No 36
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=75.13 E-value=3.2 Score=42.28 Aligned_cols=191 Identities=20% Similarity=0.296 Sum_probs=116.7
Q ss_pred ceeEEeecc--chhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhh
Q 020740 97 KIIEIVAAR--DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (322)
Q Consensus 97 ~V~EIv~a~--diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~ 174 (322)
+|.-|-+.+ +.++-=++-|--.++--+||+-+=-+.+.+..=|-|+=+.+.|..+... |+| +++.+--
T Consensus 265 aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~----sfD------~tvRiHG 334 (508)
T KOG0275|consen 265 AVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSA----SFD------QTVRIHG 334 (508)
T ss_pred ceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcc----ccc------ceEEEec
Confidence 344444442 4556667778888888888855545666666778888899888887764 355 4566667
Q ss_pred hHhCCCCCCCcceeecccCCCCeE---EecCCCceEEEEecCCCeEEEEeccCcEEEE--Eecccc-----eeeEEEcCC
Q 020740 175 IRRGKPDAGFALFESESLKWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLY--SISDKN-----VQEIKISPG 244 (322)
Q Consensus 175 i~~gk~~~g~~LFe~~~L~~PgFV---EFDdvNgkilty~aq~~~YrVfdlknYs~LY--sIsde~-----VqEIkIS~G 244 (322)
++.||.-+.+ -.|-.|| .|-+.-..|+++ ..||+.|||++|+.+|+- .-..++ |.=+-=+|.
T Consensus 335 lKSGK~LKEf-------rGHsSyvn~a~ft~dG~~iisa-SsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpe 406 (508)
T KOG0275|consen 335 LKSGKCLKEF-------RGHSSYVNEATFTDDGHHIISA-SSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPE 406 (508)
T ss_pred cccchhHHHh-------cCccccccceEEcCCCCeEEEe-cCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCc
Confidence 7888864332 2333443 466666677775 468999999999999773 222221 111222244
Q ss_pred EEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhh----hhccceeEEEecCCceeEEEcccccc
Q 020740 245 IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFI----EQFNEKLLVKQENENLQILDVRISLF 312 (322)
Q Consensus 245 imll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFi----E~f~EkLLIKQE~~~LqI~Dl~~~~~ 312 (322)
+|+ +-++. |+++ |+++ .|+++.+|.. .....=||+ -.=+|-++---|+.-|--+.+.+.++
T Consensus 407 h~i-VCNrs-ntv~--imn~-qGQvVrsfsS--GkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L 471 (508)
T KOG0275|consen 407 HFI-VCNRS-NTVY--IMNM-QGQVVRSFSS--GKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL 471 (508)
T ss_pred eEE-EEcCC-CeEE--EEec-cceEEeeecc--CCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce
Confidence 442 22222 3333 3343 4888888763 223344554 34578888888888888888777654
No 37
>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=74.53 E-value=4.1 Score=35.76 Aligned_cols=59 Identities=20% Similarity=0.341 Sum_probs=46.0
Q ss_pred EEEEEecccceee-EEEcCCEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchh
Q 020740 226 TMLYSISDKNVQE-IKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (322)
Q Consensus 226 s~LYsIsde~VqE-IkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqF 285 (322)
+++..++-+++.+ -....|.++.+..+..+.+|..|..|.+.+.+.++||.|. -+.+.|
T Consensus 77 ~~v~~vp~~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~i~~~~v~vD~NHPLA-Gk~L~f 136 (156)
T PRK15095 77 DLIQYFSRRDFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLA-GQTVHF 136 (156)
T ss_pred HHEEEecHHHCCcccCCCCCCEEEEECCCCCEEEEEEEEEcCCEEEEECCCcCC-CCEEEE
Confidence 3666777666653 2356787777777777889999999999999999999998 666665
No 38
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=71.28 E-value=22 Score=35.81 Aligned_cols=111 Identities=18% Similarity=0.217 Sum_probs=76.0
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCcE-----EEEEecccceeeEEEc-CCEEEEEEecCCCeeEEEEEEeecCceee
Q 020740 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT-----MLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (322)
Q Consensus 198 VEFDdvNgkilty~aq~~~YrVfdlknYs-----~LYsIsde~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~l~ 271 (322)
++|-..-+-.+++..=|++.|+|++.+-- -++++. .-|.++.-| +|.- ++.-.... -+|+.+|++|+...
T Consensus 33 l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~-~PvL~v~Wsddgsk-Vf~g~~Dk--~~k~wDL~S~Q~~~ 108 (347)
T KOG0647|consen 33 LAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHD-GPVLDVCWSDDGSK-VFSGGCDK--QAKLWDLASGQVSQ 108 (347)
T ss_pred eEeccccCceEEecccCCceEEEEEecCCcccchhhhccC-CCeEEEEEccCCce-EEeeccCC--ceEEEEccCCCeee
Confidence 55666555566677779999999999841 344444 556677766 4433 23222332 47999999998877
Q ss_pred eeeeccccCCcchhhhhccceeEEE-ecCCceeEEEcccccce
Q 020740 272 SFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRISLFL 313 (322)
Q Consensus 272 ~f~~~L~~sk~iqFiE~f~EkLLIK-QE~~~LqI~Dl~~~~~~ 313 (322)
-..|. .+-+-+.|++-.+-.+|+- -=|+.|+-||.|++.-+
T Consensus 109 v~~Hd-~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv 150 (347)
T KOG0647|consen 109 VAAHD-APVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPV 150 (347)
T ss_pred eeecc-cceeEEEEecCCCcceeEecccccceeecccCCCCee
Confidence 66564 4466677999988555554 47899999999987644
No 39
>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional
Probab=67.92 E-value=5.1 Score=36.99 Aligned_cols=60 Identities=22% Similarity=0.455 Sum_probs=46.9
Q ss_pred CcEEEEEecccceeeEE-EcCCEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchh
Q 020740 224 NYTMLYSISDKNVQEIK-ISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (322)
Q Consensus 224 nYs~LYsIsde~VqEIk-IS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqF 285 (322)
+=+++..++.+.++++. +.+|+.+.. +.....+|..|..|.+.+++.+|||.|. -+.+.|
T Consensus 72 d~~lV~~vpr~~F~~~~~l~~G~~~~~-~~~~G~~~~~V~ev~~d~V~vD~NHPLA-G~~L~F 132 (196)
T PRK10737 72 DENLVQRVPKDVFMGVDELQVGMRFLA-ETDQGPVPVEITAVEDDHVVVDGNHMLA-GQNLKF 132 (196)
T ss_pred ChHHEEEecHHHCCCccCCCCCCEEEE-eCCCCcEEEEEEEEcCCEEEEECCCcCC-CCEEEE
Confidence 34578888888887653 789987555 4455679999999999999999999988 555654
No 40
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=65.48 E-value=32 Score=33.97 Aligned_cols=111 Identities=18% Similarity=0.299 Sum_probs=70.6
Q ss_pred CCceEEEEecCCCeEEEEeccCcEEE--EEecccceeeEEEc-CCEEEEEEecCCCeeEEEEEEeecCceeeeeeecccc
Q 020740 203 VNGKVLTYSAQDSIYKVFDLKNYTML--YSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (322)
Q Consensus 203 vNgkilty~aq~~~YrVfdlknYs~L--YsIsde~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~ 279 (322)
+.|+-...+..|.+.|.|+-.-=.+| |+=...+|.+.-.+ |+.=+ -. -..-=-..++|..||+.+..|.--+.+
T Consensus 27 ~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf-~s--~GgDk~v~vwDV~TGkv~Rr~rgH~aq 103 (307)
T KOG0316|consen 27 VDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKF-AS--CGGDKAVQVWDVNTGKVDRRFRGHLAQ 103 (307)
T ss_pred cCCCEEEEcCCCceEEeecccccceeeeecCCCceeeecccccccccc-cc--CCCCceEEEEEcccCeeeeecccccce
Confidence 44555555788999999986655544 44444555555444 22211 11 111224568999999999999833677
Q ss_pred CCcchhhhhccceeEEEecCCceeEEEcccccceeeee
Q 020740 280 NKKVDFIEQFNEKLLVKQENENLQILDVRISLFLPLQL 317 (322)
Q Consensus 280 sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~~~~~ 317 (322)
-.-|+|=|-- +-++=--=+..+|.||+|++-.-|+|.
T Consensus 104 VNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 104 VNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred eeEEEecCcc-eEEEeccccceeEEEEcccCCCCccch
Confidence 7777765531 112222367899999999999999984
No 41
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=65.19 E-value=50 Score=34.53 Aligned_cols=135 Identities=20% Similarity=0.313 Sum_probs=83.5
Q ss_pred ccchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCC
Q 020740 104 ARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG 183 (322)
Q Consensus 104 a~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g 183 (322)
|..+++.-..--.-..+|.+||+-+-.|- +..+|-|+=+|. |-|++. ..++|. |.|.+ +.|+|++-+.
T Consensus 143 A~NVLlsag~Dn~v~iWnv~tgeali~l~--hpd~i~S~sfn~-dGs~l~--TtckDK----kvRv~---dpr~~~~v~e 210 (472)
T KOG0303|consen 143 APNVLLSAGSDNTVSIWNVGTGEALITLD--HPDMVYSMSFNR-DGSLLC--TTCKDK----KVRVI---DPRRGTVVSE 210 (472)
T ss_pred chhhHhhccCCceEEEEeccCCceeeecC--CCCeEEEEEecc-CCceee--eecccc----eeEEE---cCCCCcEeee
Confidence 45555554445566789999998776665 888999999995 455555 344554 55555 5566665222
Q ss_pred CcceeecccCCCCeEEecCCCceEEEEe---cCCCeEEEEeccCcEEEEEecccceeeEEEcCCEEEEEEecCCCeeEE
Q 020740 184 FALFESESLKWPGFVEFDDVNGKVLTYS---AQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPL 259 (322)
Q Consensus 184 ~~LFe~~~L~~PgFVEFDdvNgkilty~---aq~~~YrVfdlknYs~LYsIsde~VqEIkIS~Gimll~~q~~~~~iPl 259 (322)
.+--+... |-=+-| -.||+|.|-- ..+.-|-.||-+|.+.= --.+|+-=|+|+|+=++.+-.++++|
T Consensus 211 ~~~heG~k---~~Raif-l~~g~i~tTGfsr~seRq~aLwdp~nl~eP-----~~~~elDtSnGvl~PFyD~dt~ivYl 280 (472)
T KOG0303|consen 211 GVAHEGAK---PARAIF-LASGKIFTTGFSRMSERQIALWDPNNLEEP-----IALQELDTSNGVLLPFYDPDTSIVYL 280 (472)
T ss_pred cccccCCC---cceeEE-eccCceeeeccccccccceeccCcccccCc-----ceeEEeccCCceEEeeecCCCCEEEE
Confidence 11111000 111111 1245555422 23667889999998832 22466677999999999999999886
No 42
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=64.78 E-value=1.4e+02 Score=28.76 Aligned_cols=187 Identities=14% Similarity=0.138 Sum_probs=94.7
Q ss_pred eeccchhhhhhccccceeeecccccEEEEecCCCCceE----------EEEeeecCCCeEEEEEeEecCCCceeeeeeee
Q 020740 102 VAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVI----------RSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (322)
Q Consensus 102 v~a~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvI----------rSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~ 171 (322)
+.+.+.|++...+|.-.|||..||+.+--.+...+.-+ -++-+ .++.+++.+ .-..|.|--.
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~-----~~g~l~ald~- 137 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGS-----EKGQVYALNA- 137 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEc-----CCCEEEEEEC-
Confidence 44688999999999999999999999987766542111 01111 123344321 1123444322
Q ss_pred hhhhHhCCCC----CCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEcCCEEE
Q 020740 172 IEYIRRGKPD----AGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIML 247 (322)
Q Consensus 172 ~e~i~~gk~~----~g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS~Giml 247 (322)
.-||+- .+.+.. +-.+..-|-+=+-..+|.+.++|+++|. .+|....-..-..+. ....--+.+|.++
T Consensus 138 ----~tG~~~W~~~~~~~~~-ssP~v~~~~v~v~~~~g~l~ald~~tG~-~~W~~~~~~~~~~~~--~~~sP~v~~~~v~ 209 (394)
T PRK11138 138 ----EDGEVAWQTKVAGEAL-SRPVVSDGLVLVHTSNGMLQALNESDGA-VKWTVNLDVPSLTLR--GESAPATAFGGAI 209 (394)
T ss_pred ----CCCCCcccccCCCcee-cCCEEECCEEEEECCCCEEEEEEccCCC-EeeeecCCCCccccc--CCCCCEEECCEEE
Confidence 223331 111111 1122223444455667777777777775 356655321111100 0001112234432
Q ss_pred EEEecCCCeeEEEEEEeecCceeeeeeecccc------------CCcchhhhhccceeEEEecCCceeEEEcccccc
Q 020740 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHR------------NKKVDFIEQFNEKLLVKQENENLQILDVRISLF 312 (322)
Q Consensus 248 l~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~------------sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~ 312 (322)
+ .. ..+. +.-++++||+.+-++..--+. ..++ ..+..+++--.+..|..+|+.+-+.
T Consensus 210 ~-~~-~~g~--v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~----v~~~~vy~~~~~g~l~ald~~tG~~ 278 (394)
T PRK11138 210 V-GG-DNGR--VSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPV----VVGGVVYALAYNGNLVALDLRSGQI 278 (394)
T ss_pred E-Ec-CCCE--EEEEEccCChhhheeccccCCCccchhcccccCCCcE----EECCEEEEEEcCCeEEEEECCCCCE
Confidence 2 22 2222 345788899887655421110 1111 2467788877778888888877653
No 43
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=64.35 E-value=17 Score=37.53 Aligned_cols=54 Identities=22% Similarity=0.319 Sum_probs=39.6
Q ss_pred CCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEe--cccceeeEEEcCCEEE
Q 020740 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKISPGIML 247 (322)
Q Consensus 194 ~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsI--sde~VqEIkIS~Giml 247 (322)
|-|-|=-=+...|++.--+.|++.||||..|=++|=.+ --|+|.-.++++|+|+
T Consensus 236 HtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mv 291 (499)
T KOG0281|consen 236 HTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMV 291 (499)
T ss_pred CCCcEEeeeccceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEE
Confidence 44554322233357776778999999999999976443 3489999999999995
No 44
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=63.35 E-value=23 Score=37.36 Aligned_cols=105 Identities=17% Similarity=0.327 Sum_probs=78.2
Q ss_pred Cce-EEEEecCCCeEEEEeccCcE-----EEEEecccceeeEEEcCCEEEEEEecCCCeeEEEEEEeecCceeeeeeecc
Q 020740 204 NGK-VLTYSAQDSIYKVFDLKNYT-----MLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (322)
Q Consensus 204 Ngk-ilty~aq~~~YrVfdlknYs-----~LYsIsde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L 277 (322)
||. ++..+....-|-+|||.+=+ .+|-...+-+.-+.||+--=.+..++..++| .||..-||+.+++|+. =
T Consensus 268 ~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I--~lLhakT~eli~s~Ki-e 344 (514)
T KOG2055|consen 268 NGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHI--HLLHAKTKELITSFKI-E 344 (514)
T ss_pred CCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceE--Eeehhhhhhhhheeee-c
Confidence 777 77777888889999997654 6777777777778888443345667777775 6799999999999874 2
Q ss_pred ccCCcchhhhhccceeEEEecCCceeEEEcccccc
Q 020740 278 HRNKKVDFIEQFNEKLLVKQENENLQILDVRISLF 312 (322)
Q Consensus 278 ~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~ 312 (322)
..-+++-|-+- +..|++--+.+.+-+|||+....
T Consensus 345 G~v~~~~fsSd-sk~l~~~~~~GeV~v~nl~~~~~ 378 (514)
T KOG2055|consen 345 GVVSDFTFSSD-SKELLASGGTGEVYVWNLRQNSC 378 (514)
T ss_pred cEEeeEEEecC-CcEEEEEcCCceEEEEecCCcce
Confidence 44556666633 36777777888999999998743
No 45
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=63.32 E-value=1.3e+02 Score=28.23 Aligned_cols=187 Identities=19% Similarity=0.183 Sum_probs=94.2
Q ss_pred eeccchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCC
Q 020740 102 VAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD 181 (322)
Q Consensus 102 v~a~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~ 181 (322)
+.+.+.|++.+..|.-.|||..||+.+--.+... ++..+.... ++.+++.+ .+ ..|.|-.. ..|+.-
T Consensus 62 ~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~-~~~~~p~v~--~~~v~v~~---~~--g~l~ald~-----~tG~~~ 128 (377)
T TIGR03300 62 AVAGGKVYAADADGTVVALDAETGKRLWRVDLDE-RLSGGVGAD--GGLVFVGT---EK--GEVIALDA-----EDGKEL 128 (377)
T ss_pred EEECCEEEEECCCCeEEEEEccCCcEeeeecCCC-CcccceEEc--CCEEEEEc---CC--CEEEEEEC-----CCCcEe
Confidence 3457889999999999999999999887666544 233344333 34444322 11 23444322 123220
Q ss_pred CCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccc-e------eeEEEcCCEEEEEEecCC
Q 020740 182 AGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN-V------QEIKISPGIMLLIFTKAS 254 (322)
Q Consensus 182 ~g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~-V------qEIkIS~Gimll~~q~~~ 254 (322)
=.. -+.......|-. .+++++. ...++....||.++=+.+++..... . ....+.+|.++ +-. ..
T Consensus 129 W~~-~~~~~~~~~p~v-----~~~~v~v-~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~-~~~-~~ 199 (377)
T TIGR03300 129 WRA-KLSSEVLSPPLV-----ANGLVVV-RTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVL-VGF-AG 199 (377)
T ss_pred eee-ccCceeecCCEE-----ECCEEEE-ECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEE-EEC-CC
Confidence 000 011112223322 1233333 2345556666666666665554321 0 11123345432 222 22
Q ss_pred CeeEEEEEEeecCceeeeeeeccccC-Ccc----hh---hhhccceeEEEecCCceeEEEcccccc
Q 020740 255 GHVPLKILSIEDGTVLKSFNHLLHRN-KKV----DF---IEQFNEKLLVKQENENLQILDVRISLF 312 (322)
Q Consensus 255 ~~iPlkIlsIedG~~l~~f~~~L~~s-k~i----qF---iE~f~EkLLIKQE~~~LqI~Dl~~~~~ 312 (322)
.. +.-++++||+.+-+...-.+.. .++ ++ -...+..+++--.+..|..||+.+.++
T Consensus 200 g~--v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~ 263 (377)
T TIGR03300 200 GK--LVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV 263 (377)
T ss_pred CE--EEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE
Confidence 22 4567889999876543211100 000 00 012367888888888999999977654
No 46
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=62.95 E-value=56 Score=32.66 Aligned_cols=164 Identities=21% Similarity=0.276 Sum_probs=101.5
Q ss_pred ccceeeeccCCCCcccccccccccccceeEEeec--cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCC
Q 020740 71 RLQEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNN 148 (322)
Q Consensus 71 ~l~~~fD~~d~k~~~~~~lpfl~kRS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~N 148 (322)
+|-.+||.-.|++...-. =.....|+..+.. +-.|+--+.-|..+.+|+.||. .++||++|..=
T Consensus 122 kllrvfdln~p~App~E~---~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt-----------~v~sL~~~s~V 187 (334)
T KOG0278|consen 122 KLLRVFDLNRPKAPPKEI---SGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGT-----------EVQSLEFNSPV 187 (334)
T ss_pred HHhhhhhccCCCCCchhh---cCCCCcceeEEEeccCceEEeeccCCceEEEEeccCc-----------EEEEEecCCCC
Confidence 345678888888765332 1233456666655 2233333677888888888875 57888888644
Q ss_pred CeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEE
Q 020740 149 DSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML 228 (322)
Q Consensus 149 dSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~L 228 (322)
.|+=+ . -.|+|||- +..+..+|||-+++.+|
T Consensus 188 tSlEv---------------------s---------------------------~dG~ilTi-a~gssV~Fwdaksf~~l 218 (334)
T KOG0278|consen 188 TSLEV---------------------S---------------------------QDGRILTI-AYGSSVKFWDAKSFGLL 218 (334)
T ss_pred cceee---------------------c---------------------------cCCCEEEE-ecCceeEEeccccccce
Confidence 44322 0 13566663 66888999998888755
Q ss_pred --EEeccccee--------eEEEcCCEEEEEEecCCCeeEEEEEEeecCceeeeeeecccc--CCcchhhhhccceeEEE
Q 020740 229 --YSISDKNVQ--------EIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR--NKKVDFIEQFNEKLLVK 296 (322)
Q Consensus 229 --YsIsde~Vq--------EIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~--sk~iqFiE~f~EkLLIK 296 (322)
|+.+ -+|. ++=|++|=+ +.+.-+|-.||+++.+++- -|. ---+.| -+=+|---+-
T Consensus 219 Ks~k~P-~nV~SASL~P~k~~fVaGged----------~~~~kfDy~TgeEi~~~nk-gh~gpVhcVrF-SPdGE~yAsG 285 (334)
T KOG0278|consen 219 KSYKMP-CNVESASLHPKKEFFVAGGED----------FKVYKFDYNTGEEIGSYNK-GHFGPVHCVRF-SPDGELYASG 285 (334)
T ss_pred eeccCc-cccccccccCCCceEEecCcc----------eEEEEEeccCCceeeeccc-CCCCceEEEEE-CCCCceeecc
Confidence 2222 2222 566666665 7888999999999998731 111 111222 1235555666
Q ss_pred ecCCceeEEEcccc
Q 020740 297 QENENLQILDVRIS 310 (322)
Q Consensus 297 QE~~~LqI~Dl~~~ 310 (322)
-|+..|++|-+...
T Consensus 286 SEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 286 SEDGTIRLWQTTPG 299 (334)
T ss_pred CCCceEEEEEecCC
Confidence 79999999976543
No 47
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=61.83 E-value=46 Score=34.80 Aligned_cols=180 Identities=16% Similarity=0.239 Sum_probs=108.8
Q ss_pred hhhhccccceeeecccccEEE--EecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcc
Q 020740 109 FALAQSGVCAAFCRETNQRIC--FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFAL 186 (322)
Q Consensus 109 ~aL~~sG~c~af~r~tn~~iC--~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~L 186 (322)
+.-++||- |..|+|...= +|+-.+|..||++=+..+...+|+ .|+.-.+|----+..-++.-+-
T Consensus 112 ltgs~SGE---FtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiS-----gD~gG~iKyWqpnmnnVk~~~a------ 177 (464)
T KOG0284|consen 112 LTGSQSGE---FTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMIS-----GDKGGMIKYWQPNMNNVKIIQA------ 177 (464)
T ss_pred Eeeccccc---EEEecCceeeHHHHhhhhcccceeEEEccCCCEEEE-----cCCCceEEecccchhhhHHhhH------
Confidence 33455654 5566553222 789999999999999999999887 3444455543333322221000
Q ss_pred eeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcCCEEEEEEecCCCeeEEEEEEe
Q 020740 187 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSI 264 (322)
Q Consensus 187 Fe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~Gimll~~q~~~~~iPlkIlsI 264 (322)
=.++.++- +-|-....|-+|| ..||+.|+||-..+..==.|+ .=+|.-+-=-|--=|+.--...| ++|+.|-
T Consensus 178 hh~eaIRd---lafSpnDskF~t~-SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDn--lVKlWDp 251 (464)
T KOG0284|consen 178 HHAEAIRD---LAFSPNDSKFLTC-SDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDN--LVKLWDP 251 (464)
T ss_pred hhhhhhhe---eccCCCCceeEEe-cCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCc--eeEeecC
Confidence 01133332 3344555566665 579999999999988533333 22333333333333334444455 9999999
Q ss_pred ecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEEccc
Q 020740 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRI 309 (322)
Q Consensus 265 edG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~ 309 (322)
-+|++|.++-.-=..--.+.|.--. -+||---+|.+++++|+|.
T Consensus 252 rSg~cl~tlh~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~ 295 (464)
T KOG0284|consen 252 RSGSCLATLHGHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRT 295 (464)
T ss_pred CCcchhhhhhhccceEEEEEEcCCC-CeeEEccCCceEEEEehhH
Confidence 9999998664100111234454444 6788888999999999993
No 48
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=61.32 E-value=12 Score=38.86 Aligned_cols=112 Identities=13% Similarity=0.195 Sum_probs=72.6
Q ss_pred eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEe--cccceeeEEEcCCEEEEEEecCCCeeEEEEEEeecCceeeeee
Q 020740 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (322)
Q Consensus 197 FVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsI--sde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~ 274 (322)
-++||-.|.-+++ ..+|++-++|+..+|.++=.+ -.+.|-+.|+.-+.--++ -.+.-.-+|+.+|+.+.+.++..
T Consensus 224 ~~d~d~~~~~~iA-as~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vV--sgs~DRtiK~WDl~k~~C~kt~l 300 (459)
T KOG0288|consen 224 SIDFDSDNKHVIA-ASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVV--SGSADRTIKLWDLQKAYCSKTVL 300 (459)
T ss_pred eeeecCCCceEEe-ecCCCceeeeeccchhhhhhhcccccceeeehhhcccccee--eccccchhhhhhhhhhheecccc
Confidence 3678877766665 567899999999999976544 456677777765554322 12344678999999999888543
Q ss_pred eccccCCcchhhhhccceeEEEecCCceeEEEcccccceee
Q 020740 275 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISLFLPL 315 (322)
Q Consensus 275 ~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~~~ 315 (322)
+-+.--| |+.-....+=---+++++.||.++...+-.
T Consensus 301 ---~~S~cnD-I~~~~~~~~SgH~DkkvRfwD~Rs~~~~~s 337 (459)
T KOG0288|consen 301 ---PGSQCND-IVCSISDVISGHFDKKVRFWDIRSADKTRS 337 (459)
T ss_pred ---ccccccc-eEecceeeeecccccceEEEeccCCceeeE
Confidence 3233333 333222222223566799999999877644
No 49
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=60.97 E-value=74 Score=28.16 Aligned_cols=114 Identities=15% Similarity=0.264 Sum_probs=73.7
Q ss_pred EEecCCCceE-EEEecCCCeEEEEeccCcEEEEEecccceeeEEEcC-CEEEEEEecCCCeeEEEEEEeecCceeeeeee
Q 020740 198 VEFDDVNGKV-LTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (322)
Q Consensus 198 VEFDdvNgki-lty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~ 275 (322)
+.+.+.+.+. +.+.......++||++ -..++++....+..|+.|| |-+|++.--.+.-=-|.+.|+.+.+.+..+.+
T Consensus 65 ~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~ 143 (194)
T PF08662_consen 65 VAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEH 143 (194)
T ss_pred EEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecccc
Confidence 4455555553 4444456689999997 7888999988899999995 55655543222213478899999999987765
Q ss_pred ccccCCcchhhhhccceeEEE------ecCCceeEEEcccccceee
Q 020740 276 LLHRNKKVDFIEQFNEKLLVK------QENENLQILDVRISLFLPL 315 (322)
Q Consensus 276 ~L~~sk~iqFiE~f~EkLLIK------QE~~~LqI~Dl~~~~~~~~ 315 (322)
. ....++| -.-+.+++.= +.+...+||+.--..+.+.
T Consensus 144 ~--~~t~~~W-sPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~ 186 (194)
T PF08662_consen 144 S--DATDVEW-SPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKK 186 (194)
T ss_pred C--cEEEEEE-cCCCCEEEEEEeccceeccccEEEEEecCeEeEec
Confidence 3 2234442 1234444432 3567889999876655543
No 50
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=60.86 E-value=20 Score=39.40 Aligned_cols=74 Identities=18% Similarity=0.295 Sum_probs=51.5
Q ss_pred CeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEE---cCCEEEEEEecCCCeeEEEEEEeecCceeee
Q 020740 196 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKI---SPGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (322)
Q Consensus 196 gFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkI---S~Gimll~~q~~~~~iPlkIlsIedG~~l~~ 272 (322)
.-|+|..+...+.| ++.|.+.|+|.+.|+|||=-++.-.=.=.|. ++|-- ++.-.+.+ -+||.+|-|++++++
T Consensus 509 w~V~Fs~~dq~laT-~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~q-liS~~adG--liKlWnikt~eC~~t 584 (775)
T KOG0319|consen 509 WCVSFSKNDQLLAT-CSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQ-LISAGADG--LIKLWNIKTNECEMT 584 (775)
T ss_pred EEEEeccccceeEe-ccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcE-EEeccCCC--cEEEEeccchhhhhh
Confidence 35899876555444 6679999999999999999988554333332 34444 23333333 259999999999996
Q ss_pred e
Q 020740 273 F 273 (322)
Q Consensus 273 f 273 (322)
+
T Consensus 585 l 585 (775)
T KOG0319|consen 585 L 585 (775)
T ss_pred h
Confidence 6
No 51
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=60.37 E-value=18 Score=33.24 Aligned_cols=68 Identities=19% Similarity=0.258 Sum_probs=53.6
Q ss_pred cccccccccceeEEeeccchhhhhhccccceeeecccccEEE-------EecC------CCCceEEEEeeecCCCeEEEE
Q 020740 88 VLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRIC-------FLNV------TADEVIRSLFYNKNNDSLITV 154 (322)
Q Consensus 88 ~lpfl~kRS~V~EIv~a~diI~aL~~sG~c~af~r~tn~~iC-------~lN~------s~dEvIrSiFyNk~NdSlItv 154 (322)
.+|+|.=-++|.=+-.-++.++|++.+|.+.++|-.+++-+. .||. .+..-|.++..+++..-||+.
T Consensus 5 l~P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~l 84 (219)
T PF07569_consen 5 LLPPIVLGSPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTL 84 (219)
T ss_pred ccCcEecCCceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEE
Confidence 378888889988888889999999999999999998764332 1333 567778888888777777776
Q ss_pred E
Q 020740 155 S 155 (322)
Q Consensus 155 S 155 (322)
|
T Consensus 85 s 85 (219)
T PF07569_consen 85 S 85 (219)
T ss_pred e
Confidence 6
No 52
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=60.13 E-value=1.6e+02 Score=29.53 Aligned_cols=196 Identities=16% Similarity=0.203 Sum_probs=110.4
Q ss_pred ceeEEeeccchhhhhhccccceeee-------cccccEEEEecCCCC---c--eEEEEeeecCCCeEEEEEeEecCCCce
Q 020740 97 KIIEIVAARDIVFALAQSGVCAAFC-------RETNQRICFLNVTAD---E--VIRSLFYNKNNDSLITVSVYASDNFSS 164 (322)
Q Consensus 97 ~V~EIv~a~diI~aL~~sG~c~af~-------r~tn~~iC~lN~s~d---E--vIrSiFyNk~NdSlItvSvy~sd~fS~ 164 (322)
+|-..++-++.++.-.. |+..++. ..+-+..=..||-.- | =|-+++.-...+|+|++ . .| ++
T Consensus 64 piy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~A--g-GD--~~ 137 (325)
T KOG0649|consen 64 PIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFA--G-GD--GV 137 (325)
T ss_pred CeeeeeeehhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEe--c-CC--eE
Confidence 44444444555444333 5554442 112222225566554 2 37889999889999983 2 34 34
Q ss_pred eeeeeeehhhhHhCCCCCCCcceeecccCCCCeEE---ecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEE
Q 020740 165 LRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVE---FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKI 241 (322)
Q Consensus 165 LkCr~~~~e~i~~gk~~~g~~LFe~~~L~~PgFVE---FDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkI 241 (322)
+.|- ++.-|+ |+.+--.|-+|+- --+-|+.|++ -++||+.||||+|+=.++=.|..-.= +=.+
T Consensus 138 ~y~~-----dlE~G~-------i~r~~rGHtDYvH~vv~R~~~~qils-G~EDGtvRvWd~kt~k~v~~ie~yk~-~~~l 203 (325)
T KOG0649|consen 138 IYQV-----DLEDGR-------IQREYRGHTDYVHSVVGRNANGQILS-GAEDGTVRVWDTKTQKHVSMIEPYKN-PNLL 203 (325)
T ss_pred EEEE-----EecCCE-------EEEEEcCCcceeeeeeecccCcceee-cCCCccEEEEeccccceeEEeccccC-hhhc
Confidence 4443 333343 3444445666654 3367888988 57899999999999876555532111 1112
Q ss_pred c--CCEEEEEEecCCCee------EEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEEcccccce
Q 020740 242 S--PGIMLLIFTKASGHV------PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 242 S--~Gimll~~q~~~~~i------PlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
+ .|--++-.....+.+ -+.|..+-..|++--|-.. .+-+.++|.| +.+|+--||.-.|-|-+.- ++
T Consensus 204 Rp~~g~wigala~~edWlvCGgGp~lslwhLrsse~t~vfpip-a~v~~v~F~~---d~vl~~G~g~~v~~~~l~G--vl 277 (325)
T KOG0649|consen 204 RPDWGKWIGALAVNEDWLVCGGGPKLSLWHLRSSESTCVFPIP-ARVHLVDFVD---DCVLIGGEGNHVQSYTLNG--VL 277 (325)
T ss_pred CcccCceeEEEeccCceEEecCCCceeEEeccCCCceEEEecc-cceeEeeeec---ceEEEeccccceeeeeecc--EE
Confidence 2 222222222222222 2567777777777766654 4567778765 5678877888888777654 44
Q ss_pred eeeee
Q 020740 314 PLQLQ 318 (322)
Q Consensus 314 ~~~~~ 318 (322)
..|.+
T Consensus 278 ~a~ip 282 (325)
T KOG0649|consen 278 QANIP 282 (325)
T ss_pred EEecc
Confidence 44433
No 53
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=59.79 E-value=69 Score=31.93 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=67.5
Q ss_pred CceEEEEecCCCeEEEEeccCcEEEEEec---ccceeeEEE-cCCEEEEEEecCCCeeEEEEEEeecCceeeeeeecccc
Q 020740 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKNVQEIKI-SPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (322)
Q Consensus 204 Ngkilty~aq~~~YrVfdlknYs~LYsIs---de~VqEIkI-S~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~ 279 (322)
|..=|.-.-|.|..+||||++-++.-++- ++-+|.+-| ++|.||.-.+-+.+.+=-.+++=++-+++.....+..+
T Consensus 135 nQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah 214 (311)
T KOG0315|consen 135 NQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH 214 (311)
T ss_pred CcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc
Confidence 44445556679999999999998666553 344566655 48999888888888777777774444444433211111
Q ss_pred CCcc-hh-hhhccceeEEEecCCceeEEEcccccceeeeee
Q 020740 280 NKKV-DF-IEQFNEKLLVKQENENLQILDVRISLFLPLQLQ 318 (322)
Q Consensus 280 sk~i-qF-iE~f~EkLLIKQE~~~LqI~Dl~~~~~~~~~~~ 318 (322)
+.-+ +- +-.=+-||-----++..+||+..+.--+|.|++
T Consensus 215 ~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~ 255 (311)
T KOG0315|consen 215 NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT 255 (311)
T ss_pred cceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEee
Confidence 1100 00 000122222333678889999988744566654
No 54
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=58.76 E-value=87 Score=31.24 Aligned_cols=100 Identities=14% Similarity=0.133 Sum_probs=64.9
Q ss_pred CceEEEEecCCCeEEEEeccCcEEEEEecccceeeEE--Ec-CCEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccC
Q 020740 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIK--IS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (322)
Q Consensus 204 Ngkilty~aq~~~YrVfdlknYs~LYsIsde~VqEIk--IS-~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~s 280 (322)
...||+-..-|-+.|+|-..+=-|...|...+-|==+ |+ ++.+|+..- .--++|+||-++.+.--..+-.| +
T Consensus 9 ~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~----~qhvRlyD~~S~np~Pv~t~e~h-~ 83 (311)
T KOG0315|consen 9 DPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG----NQHVRLYDLNSNNPNPVATFEGH-T 83 (311)
T ss_pred CceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc----CCeeEEEEccCCCCCceeEEecc-C
Confidence 4567776677999999999999999888766554333 33 455543322 22356777777765322222233 3
Q ss_pred Ccc---hhhhhccceeEEEecCCceeEEEccc
Q 020740 281 KKV---DFIEQFNEKLLVKQENENLQILDVRI 309 (322)
Q Consensus 281 k~i---qFiE~f~EkLLIKQE~~~LqI~Dl~~ 309 (322)
|.| -| |.-+--|+---|+...+|||||+
T Consensus 84 kNVtaVgF-~~dgrWMyTgseDgt~kIWdlR~ 114 (311)
T KOG0315|consen 84 KNVTAVGF-QCDGRWMYTGSEDGTVKIWDLRS 114 (311)
T ss_pred CceEEEEE-eecCeEEEecCCCceEEEEeccC
Confidence 332 22 34466677777999999999999
No 55
>COG4260 Membrane protease subunit, stomatin/prohibitin family [Amino acid transport and metabolism]
Probab=58.11 E-value=9.5 Score=38.15 Aligned_cols=86 Identities=22% Similarity=0.406 Sum_probs=63.8
Q ss_pred CCceEEEEecCCCeEEE--------EeccCcEE---------EEEecccceeeEEEc---------CCEEEEEEecCCCe
Q 020740 203 VNGKVLTYSAQDSIYKV--------FDLKNYTM---------LYSISDKNVQEIKIS---------PGIMLLIFTKASGH 256 (322)
Q Consensus 203 vNgkilty~aq~~~YrV--------fdlknYs~---------LYsIsde~VqEIkIS---------~Gimll~~q~~~~~ 256 (322)
-+|+|.-|.+++|-|+| |-|+++.+ +|=++-+++.-||.. ++.--.++.++|.+
T Consensus 54 n~G~I~dvf~e~G~y~v~~~t~P~L~tlk~~kfgf~sp~k~eVyfvntqe~~girwGT~qpin~~dn~~~g~l~lRa~Gt 133 (345)
T COG4260 54 NGGQIADVFAEAGYYKVTTQTLPSLFTLKRFKFGFESPFKQEVYFVNTQEIKGIRWGTPQPINYFDNFYNGELFLRAHGT 133 (345)
T ss_pred cCCEEEeeecCCceeEeeecccchhhhhhcceecCCCcccceEEEEecceecceecCCCCCeecccccccceeEEeecce
Confidence 47999999999999997 56777764 555555555544433 25555678899999
Q ss_pred eEEEEEEeecCceeeeeeeccccCCcchhhhhccceeE
Q 020740 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLL 294 (322)
Q Consensus 257 iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLL 294 (322)
+.+||-| ++. |..-++.++++=++|..|+.+|
T Consensus 134 ys~kvtD-----pi~-fi~~I~g~~dvy~v~di~~q~l 165 (345)
T COG4260 134 YSIKVTD-----PIL-FIQQIPGNRDVYTVDDINQQYL 165 (345)
T ss_pred EEEEecC-----HHH-HHHhccCCCceEEHHHHHHHHH
Confidence 9999865 233 6666899999999999998875
No 56
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=56.15 E-value=60 Score=29.83 Aligned_cols=67 Identities=21% Similarity=0.363 Sum_probs=43.3
Q ss_pred CCCcceeecccCCC-CeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEe----------------cccceeeEEEc-C
Q 020740 182 AGFALFESESLKWP-GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI----------------SDKNVQEIKIS-P 243 (322)
Q Consensus 182 ~g~~LFe~~~L~~P-gFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsI----------------sde~VqEIkIS-~ 243 (322)
+|+.++-.-.|.+| -|++-+ +.-|..=-.+|...|||+++-+.++.- .+.+|..+.|+ .
T Consensus 1 sGrrl~P~i~Lgs~~~~l~~~---~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~ 77 (219)
T PF07569_consen 1 SGRRLLPPIVLGSPVSFLECN---GSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSN 77 (219)
T ss_pred CCccccCcEecCCceEEEEeC---CCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCC
Confidence 35667777777777 455543 333444568999999999999977654 44566666665 4
Q ss_pred CEEEEEEe
Q 020740 244 GIMLLIFT 251 (322)
Q Consensus 244 Gimll~~q 251 (322)
|+-++++.
T Consensus 78 G~PiV~ls 85 (219)
T PF07569_consen 78 GVPIVTLS 85 (219)
T ss_pred CCEEEEEe
Confidence 44444443
No 57
>PF04435 SPK: Domain of unknown function (DUF545) ; InterPro: IPR006570 SPK is a domain of unknown function found in SET and PHD domain containing proteins and protein kinases.
Probab=55.92 E-value=13 Score=29.50 Aligned_cols=26 Identities=31% Similarity=0.611 Sum_probs=21.7
Q ss_pred cCCCCeEEecCCCceEEEEecCCCeEE
Q 020740 192 LKWPGFVEFDDVNGKVLTYSAQDSIYK 218 (322)
Q Consensus 192 L~~PgFVEFDdvNgkilty~aq~~~Yr 218 (322)
|.-=|-||.|+ +++|+.|.+.||.++
T Consensus 83 L~~~a~v~lD~-~~rI~~Y~s~dg~l~ 108 (109)
T PF04435_consen 83 LRKHADVELDE-KGRIIKYKSKDGSLK 108 (109)
T ss_pred HHhCcEEEEcC-CCCEEEEEeCCCEEe
Confidence 44457899997 799999999999875
No 58
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=55.49 E-value=1.5e+02 Score=26.26 Aligned_cols=135 Identities=13% Similarity=0.179 Sum_probs=79.4
Q ss_pred ccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceeecccCCCCeEEecC
Q 020740 123 ETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDD 202 (322)
Q Consensus 123 ~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~~~L~~PgFVEFDd 202 (322)
+.+...+.++...+.-|+++=.+.+++.+.+++ ..-+ . ++..-+. + + .++++-. -....-|-|..
T Consensus 46 ~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~--g~~~-~--~v~lyd~---~-~-----~~i~~~~-~~~~n~i~wsP 110 (194)
T PF08662_consen 46 EKNIPVESIELKKEGPIHDVAWSPNGNEFAVIY--GSMP-A--KVTLYDV---K-G-----KKIFSFG-TQPRNTISWSP 110 (194)
T ss_pred cCCCccceeeccCCCceEEEEECcCCCEEEEEE--ccCC-c--ccEEEcC---c-c-----cEeEeec-CCCceEEEECC
Confidence 455667777776665688899999888887743 2222 1 2222222 1 2 2233221 12234577875
Q ss_pred CCceEEEEec--CCCeEEEEeccCcEEEEEecccceeeEEEc-CCEEEEEEecCC---CeeEEEEEEeecCceeeee
Q 020740 203 VNGKVLTYSA--QDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKAS---GHVPLKILSIEDGTVLKSF 273 (322)
Q Consensus 203 vNgkilty~a--q~~~YrVfdlknYs~LYsIsde~VqEIkIS-~Gimll~~q~~~---~~iPlkIlsIedG~~l~~f 273 (322)
-..-+++... ..|...|||.++++.+.+.....+-.+.-| +|-.++..--.. .---++|.+. +|+.+...
T Consensus 111 ~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 111 DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 5444444332 257899999999999999999888888888 455555543210 0112356665 46665543
No 59
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=54.52 E-value=1.2e+02 Score=30.22 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=56.5
Q ss_pred CCCeEEecCCCceEEEEec---------CCCeEEEEeccCcEEEEEecc--c-------ceeeEEEc-CCEEEEEEecC-
Q 020740 194 WPGFVEFDDVNGKVLTYSA---------QDSIYKVFDLKNYTMLYSISD--K-------NVQEIKIS-PGIMLLIFTKA- 253 (322)
Q Consensus 194 ~PgFVEFDdvNgkilty~a---------q~~~YrVfdlknYs~LYsIsd--e-------~VqEIkIS-~Gimll~~q~~- 253 (322)
+|..+ +-.-+..+.+.+. .++...|||.++.+.+=+|+- + .-..+.+| ||-.|++.+-.
T Consensus 48 ~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p 126 (352)
T TIGR02658 48 LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP 126 (352)
T ss_pred CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCC
Confidence 57776 7777888888888 889999999999999977762 2 22367777 56677777744
Q ss_pred CCeeEEEEEEeecCceeee
Q 020740 254 SGHVPLKILSIEDGTVLKS 272 (322)
Q Consensus 254 ~~~iPlkIlsIedG~~l~~ 272 (322)
.+. +.++|+++++.++.
T Consensus 127 ~~~--V~VvD~~~~kvv~e 143 (352)
T TIGR02658 127 SPA--VGVVDLEGKAFVRM 143 (352)
T ss_pred CCE--EEEEECCCCcEEEE
Confidence 444 37888888888773
No 60
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=53.94 E-value=1.2e+02 Score=31.47 Aligned_cols=197 Identities=20% Similarity=0.231 Sum_probs=106.1
Q ss_pred eccchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCce------------------
Q 020740 103 AARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSS------------------ 164 (322)
Q Consensus 103 ~a~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~------------------ 164 (322)
.|.+.|+-=++-|+.+.+|+. |+-+-.+=...+-+-...+++++..+--+||+ |-| +.
T Consensus 113 ~~~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsa--s~D-qtl~Lw~~~~~~~~~~~~~~ 188 (423)
T KOG0313|consen 113 GASKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSA--SMD-QTLRLWKWNVGENKVKALKV 188 (423)
T ss_pred ccCceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEe--cCC-ceEEEEEecCchhhhhHHhH
Confidence 446778888889999999985 87777666666655557788876664444332 111 11
Q ss_pred ----------------------------eeeee------eehhhh---------HhCCCCCCCcceeecccCCC-CeEEe
Q 020740 165 ----------------------------LRCRS------TRIEYI---------RRGKPDAGFALFESESLKWP-GFVEF 200 (322)
Q Consensus 165 ----------------------------LkCr~------~~~e~i---------~~gk~~~g~~LFe~~~L~~P-gFVEF 200 (322)
|+.-. .+.|.. +.+....+.|+-.-+--.-| --|+|
T Consensus 189 ~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w 268 (423)
T KOG0313|consen 189 CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVW 268 (423)
T ss_pred hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEE
Confidence 11111 001111 11111222444332111111 24788
Q ss_pred cCCCceEEEEecCCCeEEEEeccCcEEEEEec-ccceeeEEEcCCEEEEEEecCCCeeEEEEEEeecCc-eeeeeeeccc
Q 020740 201 DDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT-VLKSFNHLLH 278 (322)
Q Consensus 201 DdvNgkilty~aq~~~YrVfdlknYs~LYsIs-de~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~-~l~~f~~~L~ 278 (322)
+| ++.+.+ ..+|.+.|+|||.+=.+.=.|. .+-+-.|-.+|-.=|++--.+.-+ +.|.|=-+|. -+.++.+ +.
T Consensus 269 ~d-~~v~yS-~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~--irl~DPR~~~gs~v~~s~-~g 343 (423)
T KOG0313|consen 269 SD-ATVIYS-VSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRH--IRLWDPRTGDGSVVSQSL-IG 343 (423)
T ss_pred cC-CCceEe-ecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCc--eeecCCCCCCCceeEEee-ec
Confidence 88 666655 4679999999998776555543 233444445553333333322222 2333433332 1222332 23
Q ss_pred cCCcchhhh-----hccceeEEEe-cCCceeEEEccccc
Q 020740 279 RNKKVDFIE-----QFNEKLLVKQ-ENENLQILDVRISL 311 (322)
Q Consensus 279 ~sk~iqFiE-----~f~EkLLIKQ-E~~~LqI~Dl~~~~ 311 (322)
++. |++ ..+|++|+-- -++..+.||+|+.+
T Consensus 344 H~n---wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 344 HKN---WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred chh---hhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 333 443 4678888876 78889999999987
No 61
>smart00306 HintN Hint (Hedgehog/Intein) domain N-terminal region. Hedgehog/Intein domain, N-terminal region. Domain has been split to accommodate large insertions of endonucleases.
Probab=53.89 E-value=82 Score=23.65 Aligned_cols=48 Identities=29% Similarity=0.394 Sum_probs=33.3
Q ss_pred ceEEEEecCCCeE------EEEeccCcEEEEEecccceeeEEEcCCEEEEEEec
Q 020740 205 GKVLTYSAQDSIY------KVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTK 252 (322)
Q Consensus 205 gkilty~aq~~~Y------rVfdlknYs~LYsIsde~VqEIkIS~Gimll~~q~ 252 (322)
.++++++++++.+ .+|--+....+|.|.-++=.+|+++++|-+++...
T Consensus 26 ~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~i~~T~~H~~~~~~~ 79 (100)
T smart00306 26 DKVLALDEGTLKYSPVKVFLVREPKGEKKFYRIKTENGREITLTPDHLLLVRDG 79 (100)
T ss_pred CEEEEecCCCcEEEEEEEEEEEcCCcceeEEEEEECCCCEEEECCCCEEEEecC
Confidence 3466666544332 23444555699999988888999999999777655
No 62
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=52.82 E-value=2.1e+02 Score=28.81 Aligned_cols=123 Identities=22% Similarity=0.294 Sum_probs=86.7
Q ss_pred CceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceeecccCCCCeEEecCC--CceEEEEecC
Q 020740 136 DEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDV--NGKVLTYSAQ 213 (322)
Q Consensus 136 dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~~~L~~PgFVEFDdv--Ngkilty~aq 213 (322)
.+.|-++=+..+++..|+||+ |-| -.+|.--..-..++. --+.|-|++....+ .|-+.|+-..
T Consensus 148 ~~WVscvrfsP~~~~p~Ivs~--s~D-ktvKvWnl~~~~l~~------------~~~gh~~~v~t~~vSpDGslcasGgk 212 (315)
T KOG0279|consen 148 REWVSCVRFSPNESNPIIVSA--SWD-KTVKVWNLRNCQLRT------------TFIGHSGYVNTVTVSPDGSLCASGGK 212 (315)
T ss_pred cCcEEEEEEcCCCCCcEEEEc--cCC-ceEEEEccCCcchhh------------ccccccccEEEEEECCCCCEEecCCC
Confidence 568888889888878888663 333 123322221111211 12336677666654 5888998888
Q ss_pred CCeEEEEeccCcEEEEEeccc-ceeeEEEcCCEEEEEEecCCCeeEEEEEEeecCceeeeeeec
Q 020740 214 DSIYKVFDLKNYTMLYSISDK-NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (322)
Q Consensus 214 ~~~YrVfdlknYs~LYsIsde-~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~ 276 (322)
+|.--.|||..-+.||++.+. .|.-+-+||.-..|-..-.++ +||.+++++.++.+++..
T Consensus 213 dg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~s---IkIwdl~~~~~v~~l~~d 273 (315)
T KOG0279|consen 213 DGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATATS---IKIWDLESKAVVEELKLD 273 (315)
T ss_pred CceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCCc---eEEEeccchhhhhhcccc
Confidence 999999999999999999874 567888998877555555555 899999999999988744
No 63
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=52.30 E-value=1.5e+02 Score=25.29 Aligned_cols=94 Identities=19% Similarity=0.187 Sum_probs=56.3
Q ss_pred CCCeEEEEeccCcEEEEEec--ccceeeEEEcCCEEEEEEecCCCeeEEEEEEeecCceeeeeeecc------ccCCcch
Q 020740 213 QDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL------HRNKKVD 284 (322)
Q Consensus 213 q~~~YrVfdlknYs~LYsIs--de~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L------~~sk~iq 284 (322)
.++....||.++=+.+.+.+ +.-....-+.++.+++.. ..+ .+..++++||+.+-.+.... .....+.
T Consensus 44 ~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~--~~~--~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~ 119 (238)
T PF13360_consen 44 GDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGT--SDG--SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPA 119 (238)
T ss_dssp TTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEE--TTS--EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEE
T ss_pred CCCEEEEEECCCCCEEEEeeccccccceeeeccccccccc--cee--eeEecccCCcceeeeeccccccccccccccCce
Confidence 45555555555555554444 222222355666664444 223 77789999999999853211 1111111
Q ss_pred hhhhccceeEEEecCCceeEEEcccccce
Q 020740 285 FIEQFNEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 285 FiE~f~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
..++.+++--.+..|..+|+.+-++.
T Consensus 120 ---~~~~~~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 120 ---VDGDRLYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp ---EETTEEEEEETCSEEEEEETTTTEEE
T ss_pred ---EecCEEEEEeccCcEEEEecCCCcEE
Confidence 12788999998999999999987763
No 64
>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]
Probab=51.76 E-value=13 Score=34.09 Aligned_cols=60 Identities=17% Similarity=0.291 Sum_probs=47.7
Q ss_pred cCcEEEEEecccceeeE-EEcCCEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcch
Q 020740 223 KNYTMLYSISDKNVQEI-KISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVD 284 (322)
Q Consensus 223 knYs~LYsIsde~VqEI-kIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iq 284 (322)
+|=+++=.++...+++. .+.+|+.+.+-.+. ..+|-+|.++..+..+.+|||.|. -+.+-
T Consensus 72 ~~~~lvq~vp~~~F~~~~~~~vGm~~~~~~~~-~~~~~~V~~V~~~~V~VDfNHpLA-GktL~ 132 (174)
T COG1047 72 YDPDLVQRVPRDEFQGVGELEVGMEVEAEGGD-GEIPGVVTEVSGDRVTVDFNHPLA-GKTLH 132 (174)
T ss_pred CChHHeEEecHHHhCcCCCCCCCcEEEEcCCC-ceeeEEEEEEcCCEEEEeCCCcCC-CCeEE
Confidence 34446667777888888 78899986655555 999999999999999999999988 44444
No 65
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=51.76 E-value=2.3e+02 Score=27.25 Aligned_cols=181 Identities=15% Similarity=0.199 Sum_probs=94.5
Q ss_pred eccchhhhhhccccceeeecccccEEEEecCCCCce-EE---E-EeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHh
Q 020740 103 AARDIVFALAQSGVCAAFCRETNQRICFLNVTADEV-IR---S-LFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR 177 (322)
Q Consensus 103 ~a~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEv-Ir---S-iFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~ 177 (322)
..++.|++-+..|.-.|||..||+.+-..+...... ++ | +.. ++.+++.+ ++ ..+.| +. +..
T Consensus 158 v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~---~~~v~~~~---~~--g~v~a--~d---~~~ 224 (394)
T PRK11138 158 VSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA---FGGAIVGG---DN--GRVSA--VL---MEQ 224 (394)
T ss_pred EECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE---CCEEEEEc---CC--CEEEE--EE---ccC
Confidence 346777777888888999999999998776542110 00 0 111 23333321 11 22322 11 112
Q ss_pred CCCCC----CCcc----------eeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEcC
Q 020740 178 GKPDA----GFAL----------FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISP 243 (322)
Q Consensus 178 gk~~~----g~~L----------Fe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS~ 243 (322)
|+.-= +.|. ...-.+...|.+-+-..+|.+.++++.+|.- +|... -.....+-+.+
T Consensus 225 G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~-~W~~~---------~~~~~~~~~~~ 294 (394)
T PRK11138 225 GQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI-VWKRE---------YGSVNDFAVDG 294 (394)
T ss_pred ChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE-EEeec---------CCCccCcEEEC
Confidence 22100 0000 0011112234444444456666666666652 45432 11223345566
Q ss_pred CEEEEEEecCCCeeEEEEEEeecCceeeeeeeccc--cCCcchhhhhccceeEEEecCCceeEEEccccccee
Q 020740 244 GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH--RNKKVDFIEQFNEKLLVKQENENLQILDVRISLFLP 314 (322)
Q Consensus 244 Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~--~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~~ 314 (322)
|.+.+.-. ++ -+..++..||+.+-+...+.. .+.++ ..+++|++-.++..|.++|..+-++.-
T Consensus 295 ~~vy~~~~--~g--~l~ald~~tG~~~W~~~~~~~~~~~sp~----v~~g~l~v~~~~G~l~~ld~~tG~~~~ 359 (394)
T PRK11138 295 GRIYLVDQ--ND--RVYALDTRGGVELWSQSDLLHRLLTAPV----LYNGYLVVGDSEGYLHWINREDGRFVA 359 (394)
T ss_pred CEEEEEcC--CC--eEEEEECCCCcEEEcccccCCCcccCCE----EECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 76654432 22 266778899998765542111 12232 258999999999999999998877653
No 66
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=51.25 E-value=1.7e+02 Score=29.32 Aligned_cols=79 Identities=23% Similarity=0.334 Sum_probs=62.3
Q ss_pred CCCe---EEecCCCceEEE-EecCC--------CeEEEEeccCcEEEEEec-ccceeeEEEcC-CE-EEEEEecCCCeeE
Q 020740 194 WPGF---VEFDDVNGKVLT-YSAQD--------SIYKVFDLKNYTMLYSIS-DKNVQEIKISP-GI-MLLIFTKASGHVP 258 (322)
Q Consensus 194 ~PgF---VEFDdvNgkilt-y~aq~--------~~YrVfdlknYs~LYsIs-de~VqEIkIS~-Gi-mll~~q~~~~~iP 258 (322)
.||= +.|..-.+++.. -+... +..-|+|.++.+.+..|. .....-|.+|+ |- .|.......+.
T Consensus 246 rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~-- 323 (352)
T TIGR02658 246 RPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKT-- 323 (352)
T ss_pred CCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCc--
Confidence 3555 888888888877 33222 689999999999999988 77888999995 55 66777777766
Q ss_pred EEEEEeecCceeeeee
Q 020740 259 LKILSIEDGTVLKSFN 274 (322)
Q Consensus 259 lkIlsIedG~~l~~f~ 274 (322)
+.++|..+|+.+++..
T Consensus 324 VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 324 LYIFDAETGKELSSVN 339 (352)
T ss_pred EEEEECcCCeEEeeec
Confidence 5599999999999873
No 67
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=50.16 E-value=1.5e+02 Score=24.84 Aligned_cols=108 Identities=19% Similarity=0.344 Sum_probs=67.2
Q ss_pred EEecCCCceEEEEecC-CCeEEEEeccCcEEEEEec--ccceeeEEEcCCE-EEEEEecCCCeeEEEEEEeecCceeee-
Q 020740 198 VEFDDVNGKVLTYSAQ-DSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGI-MLLIFTKASGHVPLKILSIEDGTVLKS- 272 (322)
Q Consensus 198 VEFDdvNgkilty~aq-~~~YrVfdlknYs~LYsIs--de~VqEIkIS~Gi-mll~~q~~~~~iPlkIlsIedG~~l~~- 272 (322)
+.|.+-+. .+..... ++.-++||+.+...+..+. ...|..+..+|.- .++.-....+.+. +.+..+|+.+..
T Consensus 161 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~--~wd~~~~~~~~~~ 237 (466)
T COG2319 161 LAFSPDGK-LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR--LWDLSTGKLLRST 237 (466)
T ss_pred EEECCCCC-EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE--EEECCCCcEEeee
Confidence 34554444 4444454 9999999999866666555 4778888887333 2333345556666 557778888774
Q ss_pred eeeccccCCc-chhhhhccceeEEEecCCceeEEEccccc
Q 020740 273 FNHLLHRNKK-VDFIEQFNEKLLVKQENENLQILDVRISL 311 (322)
Q Consensus 273 f~~~L~~sk~-iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~ 311 (322)
+.. | ... +......+..++.--++..+++||+....
T Consensus 238 ~~~--~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 274 (466)
T COG2319 238 LSG--H-SDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSS 274 (466)
T ss_pred cCC--C-CcceeEeECCCCCEEEEecCCCcEEEeeecCCC
Confidence 331 2 222 22233344555557799999999998654
No 68
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=47.55 E-value=2.3e+02 Score=30.08 Aligned_cols=108 Identities=16% Similarity=0.224 Sum_probs=70.4
Q ss_pred eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccc--eeeEEEcCC--EEEEEEecCCCeeEEEEEEeecC-ceee
Q 020740 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN--VQEIKISPG--IMLLIFTKASGHVPLKILSIEDG-TVLK 271 (322)
Q Consensus 197 FVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~--VqEIkIS~G--imll~~q~~~~~iPlkIlsIedG-~~l~ 271 (322)
++-|....+.++.-...|+.-++||+.+=.-.++|++-+ |--.-++|+ +|++.-- =.. -+++.|+-.- +.+.
T Consensus 115 ~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGs-YDg--~vrl~DtR~~~~~v~ 191 (487)
T KOG0310|consen 115 VTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGS-YDG--KVRLWDTRSLTSRVV 191 (487)
T ss_pred EEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecC-CCc--eEEEEEeccCCceeE
Confidence 678888999999999999999999998866677777532 334444433 4433211 111 2466666544 7777
Q ss_pred eeeeccccCCcchhhhhccceeEEEecCCceeEEEcccc
Q 020740 272 SFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRIS 310 (322)
Q Consensus 272 ~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~ 310 (322)
+++|-.| =..|=| +=++-+++---|.+.++|||-..
T Consensus 192 elnhg~p-Ve~vl~--lpsgs~iasAgGn~vkVWDl~~G 227 (487)
T KOG0310|consen 192 ELNHGCP-VESVLA--LPSGSLIASAGGNSVKVWDLTTG 227 (487)
T ss_pred EecCCCc-eeeEEE--cCCCCEEEEcCCCeEEEEEecCC
Confidence 7776443 111111 12457888889999999999843
No 69
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=47.07 E-value=1.1e+02 Score=31.68 Aligned_cols=58 Identities=17% Similarity=0.285 Sum_probs=45.7
Q ss_pred CCeEEEEeccCcE--EEEEecccceeeEEEc-CCEEEEEEecCCCeeEEEEEEeecCceeeee
Q 020740 214 DSIYKVFDLKNYT--MLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSF 273 (322)
Q Consensus 214 ~~~YrVfdlknYs--~LYsIsde~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~l~~f 273 (322)
.|...+||.-|-. +...--+-.++-+.++ +|.||++.-...-+ ++++++.+|+.+.+|
T Consensus 152 ~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTV--IRVf~v~~G~kl~eF 212 (391)
T KOG2110|consen 152 SGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTV--IRVFSVPEGQKLYEF 212 (391)
T ss_pred CceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceE--EEEEEcCCccEeeee
Confidence 5677788888887 4455567789999998 78888777666555 589999999999977
No 70
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=46.28 E-value=85 Score=35.18 Aligned_cols=109 Identities=24% Similarity=0.365 Sum_probs=79.3
Q ss_pred eEEecCCCceEEEEecCCCeEEEEeccCc---EEEEEeccc-ceeeEEEcCCEEEEEEecCCCeeEEEEEEeecCceeee
Q 020740 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNY---TMLYSISDK-NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (322)
Q Consensus 197 FVEFDdvNgkilty~aq~~~YrVfdlknY---s~LYsIsde-~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~ 272 (322)
|+--|-.+|+.++-+|.+ ..-+|||++= +.|...+++ ++.=++-||++.++.---+.+. ++|++.+.++++-.
T Consensus 26 ~~~~~~~~Gr~va~~a~E-~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGs--Vqif~~~s~~~~~t 102 (888)
T KOG0306|consen 26 FVVKRSGKGRAVAVSALE-QVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGS--VQIFSLESEEILIT 102 (888)
T ss_pred EEEeecCCCcEEEEeccc-cEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCce--EEeeccCCCceeee
Confidence 555677779999876654 5679999998 466666777 8888899999887666666655 58999999988887
Q ss_pred eeeccccCCcchh--hhhccceeEEEecCCceeEEEccccc
Q 020740 273 FNHLLHRNKKVDF--IEQFNEKLLVKQENENLQILDVRISL 311 (322)
Q Consensus 273 f~~~L~~sk~iqF--iE~f~EkLLIKQE~~~LqI~Dl~~~~ 311 (322)
|+ .| .+-|-- ..+.+-.|.=--.|.++-+|||-.-+
T Consensus 103 fn--gH-K~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~ 140 (888)
T KOG0306|consen 103 FN--GH-KAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEE 140 (888)
T ss_pred ec--cc-ccceEEEEEcccCceEeecCCCccEEEEEeccce
Confidence 76 23 333321 23566667767789999999987643
No 71
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=44.77 E-value=1e+02 Score=32.88 Aligned_cols=108 Identities=19% Similarity=0.272 Sum_probs=68.1
Q ss_pred EecCCCceEEEEecCCCeEEEEeccCcE---EEEEecccceeeEEEc----------CCEEEEEEecCCCeeEEEEEEee
Q 020740 199 EFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSISDKNVQEIKIS----------PGIMLLIFTKASGHVPLKILSIE 265 (322)
Q Consensus 199 EFDdvNgkilty~aq~~~YrVfdlknYs---~LYsIsde~VqEIkIS----------~Gimll~~q~~~~~iPlkIlsIe 265 (322)
|||++ |..|+-+..|++.|+|+|++=. .||.=+ +++--|+-| .|+|++-. .-.++ ++++|++
T Consensus 366 k~n~t-g~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hs-kei~t~~wsp~g~v~~n~~~~~~l~sa-s~dst--V~lwdv~ 440 (524)
T KOG0273|consen 366 KWNPT-GSLLASCSDDGTLKIWSMGQSNSVHDLQAHS-KEIYTIKWSPTGPVTSNPNMNLMLASA-SFDST--VKLWDVE 440 (524)
T ss_pred EECCC-CceEEEecCCCeeEeeecCCCcchhhhhhhc-cceeeEeecCCCCccCCCcCCceEEEe-ecCCe--EEEEEcc
Confidence 45544 5566666779999999998765 444444 445555555 34554322 22233 5889999
Q ss_pred cCceeeeee-eccccCCcchhhhhccceeEEEecCCceeEEEcccccce
Q 020740 266 DGTVLKSFN-HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 266 dG~~l~~f~-~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
.|.+++.|. |- .+--.+.|. .-++||.=---++-+-||+....++.
T Consensus 441 ~gv~i~~f~kH~-~pVysvafS-~~g~ylAsGs~dg~V~iws~~~~~l~ 487 (524)
T KOG0273|consen 441 SGVPIHTLMKHQ-EPVYSVAFS-PNGRYLASGSLDGCVHIWSTKTGKLV 487 (524)
T ss_pred CCceeEeeccCC-CceEEEEec-CCCcEEEecCCCCeeEeccccchhee
Confidence 999999984 31 222233332 22567776777888888888877664
No 72
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=44.67 E-value=69 Score=32.38 Aligned_cols=145 Identities=18% Similarity=0.298 Sum_probs=81.5
Q ss_pred CCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceeecccCCCCeEEecC---CCceEEEEe
Q 020740 135 ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDD---VNGKVLTYS 211 (322)
Q Consensus 135 ~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~~~L~~PgFVEFDd---vNgkilty~ 211 (322)
+.-.|--+=+++++..|..+| +| =.-+.- |.+.|+-..... .|-+||-=.+ .|-..++-=
T Consensus 89 HsgAVM~l~~~~d~s~i~S~g----tD---k~v~~w---D~~tG~~~rk~k-------~h~~~vNs~~p~rrg~~lv~Sg 151 (338)
T KOG0265|consen 89 HSGAVMELHGMRDGSHILSCG----TD---KTVRGW---DAETGKRIRKHK-------GHTSFVNSLDPSRRGPQLVCSG 151 (338)
T ss_pred ccceeEeeeeccCCCEEEEec----CC---ceEEEE---ecccceeeehhc-------cccceeeecCccccCCeEEEec
Confidence 344666688888777776655 22 122333 233333211111 1233443333 333444434
Q ss_pred cCCCeEEEEecc------CcEEEEEecccceee---EEEcCCEEEEEEecCCCeeEEEEEEeecCceeeee-------ee
Q 020740 212 AQDSIYKVFDLK------NYTMLYSISDKNVQE---IKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSF-------NH 275 (322)
Q Consensus 212 aq~~~YrVfdlk------nYs~LYsIsde~VqE---IkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f-------~~ 275 (322)
..|++.|+||++ +++.-|++.+-.+.+ =.+|.||= =-+|+.|+-.+..++-+ ++
T Consensus 152 sdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggId----------n~ikvWd~r~~d~~~~lsGh~DtIt~ 221 (338)
T KOG0265|consen 152 SDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGID----------NDIKVWDLRKNDGLYTLSGHADTITG 221 (338)
T ss_pred CCCceEEEEeecccchhhccccceeEEEEEecccccceeecccc----------CceeeeccccCcceEEeecccCceee
Confidence 448999999999 887777766433322 23344432 23577777666666532 23
Q ss_pred ccccCCcchhhhhccceeEEEecCCceeEEEcccccceeee
Q 020740 276 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISLFLPLQ 316 (322)
Q Consensus 276 ~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~~~~ 316 (322)
+ |+-.-|.+||=--=+..+++||++- +-|-|
T Consensus 222 l--------sls~~gs~llsnsMd~tvrvwd~rp--~~p~~ 252 (338)
T KOG0265|consen 222 L--------SLSRYGSFLLSNSMDNTVRVWDVRP--FAPSQ 252 (338)
T ss_pred E--------EeccCCCccccccccceEEEEEecc--cCCCC
Confidence 2 4556677777777788999999986 44444
No 73
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=44.63 E-value=61 Score=33.37 Aligned_cols=139 Identities=22% Similarity=0.368 Sum_probs=76.1
Q ss_pred ceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceee--cccCC
Q 020740 117 CAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES--ESLKW 194 (322)
Q Consensus 117 c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~--~~L~~ 194 (322)
.-.||.+||+.+-.|-.-+.|+-|+-=+ -+.-|+..| |-+ + +...=+.|+.-. .-..|+. +....
T Consensus 296 AnlwDVEtge~v~~LtGHd~ELtHcstH--ptQrLVvTs---SrD-t-----TFRLWDFReaI~--sV~VFQGHtdtVTS 362 (481)
T KOG0300|consen 296 ANLWDVETGEVVNILTGHDSELTHCSTH--PTQRLVVTS---SRD-T-----TFRLWDFREAIQ--SVAVFQGHTDTVTS 362 (481)
T ss_pred ceeeeeccCceeccccCcchhccccccC--CcceEEEEe---ccC-c-----eeEeccchhhcc--eeeeecccccceeE
Confidence 4467778888877777777777665433 233444433 222 1 122223333221 1223432 22211
Q ss_pred CCeEEecCCCceEEEEecCCCeEEEEeccCcE-EEEEec-ccceeeEEEcCCE-EEEEEecCCCeeEEEEEEeecCceee
Q 020740 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS-DKNVQEIKISPGI-MLLIFTKASGHVPLKILSIEDGTVLK 271 (322)
Q Consensus 195 PgFVEFDdvNgkilty~aq~~~YrVfdlknYs-~LYsIs-de~VqEIkIS~Gi-mll~~q~~~~~iPlkIlsIedG~~l~ 271 (322)
+-|. +..+|+. ...|.+.|||||+|+- .|-.|- |--+-.|-||.|. ++++ +|.---+.|+|+ +|..|.
T Consensus 363 ---~vF~-~dd~vVS-gSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAi---PhDNRqvRlfDl-nG~Rla 433 (481)
T KOG0300|consen 363 ---VVFN-TDDRVVS-GSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAI---PHDNRQVRLFDL-NGNRLA 433 (481)
T ss_pred ---EEEe-cCCceee-cCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEe---ccCCceEEEEec-CCCccc
Confidence 1222 3344544 4568899999999997 666653 4556677888777 4332 333345678886 677776
Q ss_pred eeeeccccCC
Q 020740 272 SFNHLLHRNK 281 (322)
Q Consensus 272 ~f~~~L~~sk 281 (322)
.||+++
T Consensus 434 ----RlPrts 439 (481)
T KOG0300|consen 434 ----RLPRTS 439 (481)
T ss_pred ----cCCccc
Confidence 455444
No 74
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=44.14 E-value=70 Score=35.80 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=30.8
Q ss_pred ecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEcCC
Q 020740 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPG 244 (322)
Q Consensus 200 FDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS~G 244 (322)
+|=-+..+++.++..+..++|+-++.+|+=.|...-+.--++.||
T Consensus 379 l~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpg 423 (888)
T KOG0306|consen 379 LCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPG 423 (888)
T ss_pred EEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCC
Confidence 444566778888888888888888888887777544333333333
No 75
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=42.57 E-value=2.3e+02 Score=29.70 Aligned_cols=102 Identities=16% Similarity=0.283 Sum_probs=66.7
Q ss_pred CceEEEEecCCCeEEEEeccCc---EEE-EEecccceeeEEEcCCEEEEEEecCCCeeEEEEEEe---ecCceeeeeeec
Q 020740 204 NGKVLTYSAQDSIYKVFDLKNY---TML-YSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSI---EDGTVLKSFNHL 276 (322)
Q Consensus 204 Ngkilty~aq~~~YrVfdlknY---s~L-YsIsde~VqEIkIS~Gimll~~q~~~~~iPlkIlsI---edG~~l~~f~~~ 276 (322)
-.-+++-+..|+.+|+||.+.= .+| ..-..-+|-=|--+...=+|..-.-.+++ +|.|| +-|++++.|++
T Consensus 269 E~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~--~iwDLR~~~~~~pVA~fk~- 345 (440)
T KOG0302|consen 269 EDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTL--SIWDLRQFKSGQPVATFKY- 345 (440)
T ss_pred cCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceE--EEEEhhhccCCCcceeEEe-
Confidence 4456777788999999999987 444 44443444444444333334444444443 44443 46788889984
Q ss_pred cccCCcchhhhhc---cceeEEEecCCceeEEEcccc
Q 020740 277 LHRNKKVDFIEQF---NEKLLVKQENENLQILDVRIS 310 (322)
Q Consensus 277 L~~sk~iqFiE~f---~EkLLIKQE~~~LqI~Dl~~~ 310 (322)
+..+|-=||-. -+-|++--+++-+-||||.--
T Consensus 346 --Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 346 --HKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred --ccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 25566556655 788999999999999999643
No 76
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.19 E-value=1.3e+02 Score=30.14 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=22.7
Q ss_pred EEecCCCceEEEEecCCCeEEEEecc
Q 020740 198 VEFDDVNGKVLTYSAQDSIYKVFDLK 223 (322)
Q Consensus 198 VEFDdvNgkilty~aq~~~YrVfdlk 223 (322)
+....++++++.-+.=|++.|.||+.
T Consensus 110 vdwn~~~r~~~ltsSWD~TiKLW~~~ 135 (311)
T KOG0277|consen 110 VDWNTVRRRIFLTSSWDGTIKLWDPN 135 (311)
T ss_pred eccccccceeEEeeccCCceEeecCC
Confidence 56678999999988889999999975
No 77
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.75 E-value=1.7e+02 Score=29.40 Aligned_cols=144 Identities=19% Similarity=0.248 Sum_probs=87.0
Q ss_pred hccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHh-CCCCCCCcceeec
Q 020740 112 AQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR-GKPDAGFALFESE 190 (322)
Q Consensus 112 ~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~-gk~~~g~~LFe~~ 190 (322)
+--|.--.++..-.+-+|+.|...+=|-...|-=+.-+-+ +++|-| + .|+-- ++|. ||.-. .|.=..|
T Consensus 124 SWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlf----as~Sgd-~--~l~lw---dvr~~gk~~~-i~ah~~E 192 (311)
T KOG0277|consen 124 SWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLF----ASASGD-G--TLRLW---DVRSPGKFMS-IEAHNSE 192 (311)
T ss_pred ccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeE----EEccCC-c--eEEEE---EecCCCceeE-EEeccce
Confidence 4456667777777778888776555444444443333322 233333 2 23333 3332 33211 1111123
Q ss_pred ccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcE-EEEEecccc--eeeEEEcCCEEEEEEecCCCeeEEEEEEeecC
Q 020740 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSISDKN--VQEIKISPGIMLLIFTKASGHVPLKILSIEDG 267 (322)
Q Consensus 191 ~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs-~LYsIsde~--VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG 267 (322)
.|. -.+.-.|..+|+-.+.|+..|+||+++|. .|++|..-. |-.+|.||.+--++ .-++--|-..|.+.+-+
T Consensus 193 il~----cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lL-aSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 193 ILC----CDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLL-ASASYDMTVRIWDPERQ 267 (311)
T ss_pred eEe----ecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHh-hhccccceEEecccccc
Confidence 333 35667788999999999999999999998 899997665 55788888875333 34455577788887755
Q ss_pred ceee
Q 020740 268 TVLK 271 (322)
Q Consensus 268 ~~l~ 271 (322)
.-+.
T Consensus 268 ds~~ 271 (311)
T KOG0277|consen 268 DSAI 271 (311)
T ss_pred hhhh
Confidence 4444
No 78
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=41.64 E-value=74 Score=35.81 Aligned_cols=108 Identities=15% Similarity=0.299 Sum_probs=76.1
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEcCCEEEEEEecCCC-------eeEEEEEEeecCcee
Q 020740 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASG-------HVPLKILSIEDGTVL 270 (322)
Q Consensus 198 VEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS~Gimll~~q~~~~-------~iPlkIlsIedG~~l 270 (322)
+--|.+|..+++..+ +|..+|||.++=.++ ...++..++-.+++.+... -..+.++|++|-++.
T Consensus 499 la~D~~n~~~vsa~~-~Gilkfw~f~~k~l~--------~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv 569 (910)
T KOG1539|consen 499 LAVDGTNRLLVSAGA-DGILKFWDFKKKVLK--------KSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV 569 (910)
T ss_pred EEecCCCceEEEccC-cceEEEEecCCccee--------eeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh
Confidence 567999999999765 579999999987744 4456777777777777663 456778888888877
Q ss_pred eeeeeccccCCcchhhhhccceeEEEecCCceeEEEcccccceee
Q 020740 271 KSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISLFLPL 315 (322)
Q Consensus 271 ~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~~~ 315 (322)
..|.---.+-.+++|=+ =+--|++---|+.+++|||-++.++..
T Consensus 570 R~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~ 613 (910)
T KOG1539|consen 570 REFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDG 613 (910)
T ss_pred HHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeee
Confidence 77761112223444432 234566666889999999999887653
No 79
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=41.60 E-value=46 Score=37.06 Aligned_cols=49 Identities=22% Similarity=0.495 Sum_probs=36.6
Q ss_pred eEEecCCCceEEEEecCCCeEEEEeccCcE--EEEEecccceeeEEEcCCE
Q 020740 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDKNVQEIKISPGI 245 (322)
Q Consensus 197 FVEFDdvNgkilty~aq~~~YrVfdlknYs--~LYsIsde~VqEIkIS~Gi 245 (322)
=+.|-.+---||.--.|||+.|.|||+-=. -.|.=-.|-|-|+++|||-
T Consensus 138 ~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~ 188 (839)
T KOG0269|consen 138 KLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGY 188 (839)
T ss_pred eeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCC
Confidence 356666666777777899999999998544 3333356888999999886
No 80
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=41.19 E-value=57 Score=20.79 Aligned_cols=28 Identities=21% Similarity=0.437 Sum_probs=23.3
Q ss_pred cCCCCeEEecCCCceEEEEecCCCeEEEE
Q 020740 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVF 220 (322)
Q Consensus 192 L~~PgFVEFDdvNgkilty~aq~~~YrVf 220 (322)
|.+|.-+-.| .+|.|...|......++|
T Consensus 1 f~~P~gvav~-~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 1 FNYPHGVAVD-SDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp BSSEEEEEEE-TTSEEEEEECCCTEEEEE
T ss_pred CcCCcEEEEe-CCCCEEEEECCCCEEEEC
Confidence 4688999999 899999989888777665
No 81
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=40.49 E-value=3.5e+02 Score=28.65 Aligned_cols=178 Identities=15% Similarity=0.107 Sum_probs=106.3
Q ss_pred cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCC-----
Q 020740 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGK----- 179 (322)
Q Consensus 105 ~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk----- 179 (322)
-.++++=+..|.-..+|.++.+.++.+..++..=|=+|=.| .++++ +.=+|..+-.-++|.++
T Consensus 229 G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~---~~~ls---------sGsr~~~I~~~dvR~~~~~~~~ 296 (484)
T KOG0305|consen 229 GSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN---SSVLS---------SGSRDGKILNHDVRISQHVVST 296 (484)
T ss_pred CCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc---CceEE---------EecCCCcEEEEEEecchhhhhh
Confidence 45678888999999999999999999999888888888777 33333 12223332222222221
Q ss_pred ------------------------CCCCCcceeecccCCCCeEEecCCCc--eEEEEecC------------CCeEEEEe
Q 020740 180 ------------------------PDAGFALFESESLKWPGFVEFDDVNG--KVLTYSAQ------------DSIYKVFD 221 (322)
Q Consensus 180 ------------------------~~~g~~LFe~~~L~~PgFVEFDdvNg--kilty~aq------------~~~YrVfd 221 (322)
.|..--+|..-.... =.-|++-++ |+++.+|. |++.|+||
T Consensus 297 ~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p--~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn 374 (484)
T KOG0305|consen 297 LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP--KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWN 374 (484)
T ss_pred hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc--cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEE
Confidence 122222333311111 234444444 55666665 89999999
Q ss_pred ccCcEEEEEecc----------cceeeEEEc----CCEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhh
Q 020740 222 LKNYTMLYSISD----------KNVQEIKIS----PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE 287 (322)
Q Consensus 222 lknYs~LYsIsd----------e~VqEIkIS----~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE 287 (322)
-.+=.++=+|.. ++..||-.+ ++-+.+-.-|+ .-++..+..|+..+|.-...
T Consensus 375 ~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps--~~~~~~l~gH~~RVl~la~S------------ 440 (484)
T KOG0305|consen 375 TNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS--MKLVAELLGHTSRVLYLALS------------ 440 (484)
T ss_pred cCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc--cceeeeecCCcceeEEEEEC------------
Confidence 886555444431 233344333 22222222222 34566677777776653332
Q ss_pred hccceeEEEecCCceeEEEcccc
Q 020740 288 QFNEKLLVKQENENLQILDVRIS 310 (322)
Q Consensus 288 ~f~EkLLIKQE~~~LqI~Dl~~~ 310 (322)
..++++.+=--|++|+.|++.+.
T Consensus 441 Pdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 441 PDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCCEEEEecccCcEEeccccCC
Confidence 34899999999999999999884
No 82
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=39.99 E-value=3.1e+02 Score=28.01 Aligned_cols=109 Identities=17% Similarity=0.303 Sum_probs=64.2
Q ss_pred EecCCCceEEEEecCCCeEEEEeccCc-----EEEEEecccceeeEEEcCCEE-EEEEecCC-CeeEEEEEEeecCceee
Q 020740 199 EFDDVNGKVLTYSAQDSIYKVFDLKNY-----TMLYSISDKNVQEIKISPGIM-LLIFTKAS-GHVPLKILSIEDGTVLK 271 (322)
Q Consensus 199 EFDdvNgkilty~aq~~~YrVfdlknY-----s~LYsIsde~VqEIkIS~Gim-ll~~q~~~-~~iPlkIlsIedG~~l~ 271 (322)
..+++.-+-+.-+.=|-+-+|||+..= .-.----|++|.||..+.|-. ++..-++. |+==+.|=+++-.++++
T Consensus 157 DWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIY 236 (364)
T KOG0290|consen 157 DWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIY 236 (364)
T ss_pred ccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEe
Confidence 445565555666777889999999873 223334689999999986332 22222332 22223333344444444
Q ss_pred ee-----e-ecc-ccCCcchhhhhccceeEEEecCCceeEEEcccccce
Q 020740 272 SF-----N-HLL-HRNKKVDFIEQFNEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 272 ~f-----~-~~L-~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
+= . ++| ....++.||--|. ++...++|+|+|...-.
T Consensus 237 E~p~~~~pLlRLswnkqDpnymATf~------~dS~~V~iLDiR~P~tp 279 (364)
T KOG0290|consen 237 EDPSPSTPLLRLSWNKQDPNYMATFA------MDSNKVVILDIRVPCTP 279 (364)
T ss_pred cCCCCCCcceeeccCcCCchHHhhhh------cCCceEEEEEecCCCcc
Confidence 21 1 122 2345677777665 56788999999987643
No 83
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=39.57 E-value=1.1e+02 Score=30.82 Aligned_cols=20 Identities=20% Similarity=0.409 Sum_probs=17.8
Q ss_pred cCCCeEEEEeccCcEEEEEe
Q 020740 212 AQDSIYKVFDLKNYTMLYSI 231 (322)
Q Consensus 212 aq~~~YrVfdlknYs~LYsI 231 (322)
..|+.-|+||+++-.+|+++
T Consensus 237 ~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 237 SRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp ETTSEEEEEETTTTCEEEEE
T ss_pred eCCCeEEEEECCCCeEEEEe
Confidence 45999999999999998876
No 84
>COG3919 Predicted ATP-grasp enzyme [General function prediction only]
Probab=39.23 E-value=25 Score=35.72 Aligned_cols=28 Identities=36% Similarity=0.775 Sum_probs=25.0
Q ss_pred cccCCCCeEEecCCCceEEEEecCCCeEEEEecc
Q 020740 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK 223 (322)
Q Consensus 190 ~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlk 223 (322)
+++.|-|||||| .-||+-||.||++|..
T Consensus 258 ~si~htGlveve------fK~D~RDGs~KlldvN 285 (415)
T COG3919 258 ESIEHTGLVEVE------FKYDPRDGSYKLLDVN 285 (415)
T ss_pred HhhcccceEEEE------EEecCCCCceeEEeec
Confidence 688999999998 5799999999999864
No 85
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=37.93 E-value=57 Score=33.91 Aligned_cols=110 Identities=25% Similarity=0.293 Sum_probs=69.0
Q ss_pred eEEecCCCceEEEEecCCCeEEEEeccCcE-EEEEec--ccceeeEEEcCCEE--EEEEecCCCeeEEEEEEee------
Q 020740 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-MLYSIS--DKNVQEIKISPGIM--LLIFTKASGHVPLKILSIE------ 265 (322)
Q Consensus 197 FVEFDdvNgkilty~aq~~~YrVfdlknYs-~LYsIs--de~VqEIkIS~Gim--ll~~q~~~~~iPlkIlsIe------ 265 (322)
.++|..-|+-|||--..|++..+|||+|.. .||+.+ +.+|-.+--||+.= |+..---.- +.+.|+-
T Consensus 277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~r---l~vWDls~ig~eq 353 (422)
T KOG0264|consen 277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRR---LNVWDLSRIGEEQ 353 (422)
T ss_pred EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCc---EEEEecccccccc
Confidence 588999999999999999999999999998 777776 35666677776542 222111111 1222221
Q ss_pred ------cCceeeeeeeccccCCcchhhhhccceeEEEe--cCCceeEEEccc
Q 020740 266 ------DGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRI 309 (322)
Q Consensus 266 ------dG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQ--E~~~LqI~Dl~~ 309 (322)
+|-+=.-|.|-=|..+=.||==-=+|-=.|=- |+..||||.+..
T Consensus 354 ~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 354 SPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred ChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 22222236665555555555433344444433 889999999873
No 86
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=37.89 E-value=2.4e+02 Score=32.03 Aligned_cols=116 Identities=16% Similarity=0.303 Sum_probs=71.7
Q ss_pred cccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccc--eeeEEEcCCE-EEEEEecCCCeeEEEEEEeec
Q 020740 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN--VQEIKISPGI-MLLIFTKASGHVPLKILSIED 266 (322)
Q Consensus 190 ~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~--VqEIkIS~Gi-mll~~q~~~~~iPlkIlsIed 266 (322)
.+|.||.- =.|-.++. .++|..+.|+.++=+++|....=. |.-|.=+|-+ ++++-.... -+.|+++-.
T Consensus 163 tal~HP~T----YLNKIvvG--s~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G---~ViifNlK~ 233 (910)
T KOG1539|consen 163 TALLHPST----YLNKIVVG--SSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENG---TVIIFNLKF 233 (910)
T ss_pred eeEecchh----heeeEEEe--ecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCc---eEEEEEccc
Confidence 56666652 13444443 678999999999999999876322 1111111211 111111111 347899999
Q ss_pred CceeeeeeeccccCCcchhhhhccceeEEEe-cCCceeEEEcccccceee
Q 020740 267 GTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRISLFLPL 315 (322)
Q Consensus 267 G~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQ-E~~~LqI~Dl~~~~~~~~ 315 (322)
+++|++|++.-.+=..+-|=-- ++.+|.-- .+.-+-+|||-.++++-+
T Consensus 234 dkil~sFk~d~g~VtslSFrtD-G~p~las~~~~G~m~~wDLe~kkl~~v 282 (910)
T KOG1539|consen 234 DKILMSFKQDWGRVTSLSFRTD-GNPLLASGRSNGDMAFWDLEKKKLINV 282 (910)
T ss_pred CcEEEEEEccccceeEEEeccC-CCeeEEeccCCceEEEEEcCCCeeeee
Confidence 9999999986555555555433 45555544 557799999999887643
No 87
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=37.83 E-value=3.3e+02 Score=29.21 Aligned_cols=107 Identities=20% Similarity=0.228 Sum_probs=72.2
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcCCEEEEEEecCCCeeEEEEEEeecCceeeeeee
Q 020740 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (322)
Q Consensus 198 VEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~ 275 (322)
+.-+.--+-+++..+-|++.|+||...=.++..+- -++|..+..||.-=.+..--... -+.|.++++|+..++..-
T Consensus 415 v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg--~V~iws~~~~~l~~s~~~ 492 (524)
T KOG0273|consen 415 VTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDG--CVHIWSTKTGKLVKSYQG 492 (524)
T ss_pred ccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCC--eeEeccccchheeEeecC
Confidence 34444456677888889999999999999999983 46788888884333222222222 257899999999986531
Q ss_pred ccccCCcchhhhhccceeEEEecCCceeEEEcc
Q 020740 276 LLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 308 (322)
Q Consensus 276 ~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~ 308 (322)
- ..=.++-|=+ =+.||-++|.+++..++|+|
T Consensus 493 ~-~~Ifel~Wn~-~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 493 T-GGIFELCWNA-AGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred C-CeEEEEEEcC-CCCEEEEEecCCCceEEEec
Confidence 0 0001111111 25899999999999999987
No 88
>TIGR01445 intein_Nterm intein N-terminal splicing region. This model is based on interated search results, starting with a curated collection of intein N-terminal splicing regions from InBase, the New England Biolabs Intein Database, as presented on its web site. It is designed to recognize inteins but not the related region of the sonic hedgehog protein.
Probab=35.86 E-value=87 Score=23.28 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=24.8
Q ss_pred EEEEeccCcEEEEEecccceeeEEEcCCEEEE
Q 020740 217 YKVFDLKNYTMLYSISDKNVQEIKISPGIMLL 248 (322)
Q Consensus 217 YrVfdlknYs~LYsIsde~VqEIkIS~Gimll 248 (322)
.+||-.+....+|.|.-++=-+|+++++|-++
T Consensus 49 ~~~~~~~~~~~~~~i~t~~g~~i~~T~~H~~~ 80 (81)
T TIGR01445 49 VVVWKRRAEGKLIRIKTENGREIKATPDHPFL 80 (81)
T ss_pred eEEEEecCCCcEEEEEeCCCCEEEECCCCccc
Confidence 35788777778888888877888888887654
No 89
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=34.44 E-value=1e+02 Score=33.00 Aligned_cols=91 Identities=19% Similarity=0.118 Sum_probs=57.6
Q ss_pred CCCCeEEecCCCceEEEEecCCCeE--EEEeccCcE--EEEEecccceeeEEEcCC-EEEEEEecCCCeeEEEEEEeecC
Q 020740 193 KWPGFVEFDDVNGKVLTYSAQDSIY--KVFDLKNYT--MLYSISDKNVQEIKISPG-IMLLIFTKASGHVPLKILSIEDG 267 (322)
Q Consensus 193 ~~PgFVEFDdvNgkilty~aq~~~Y--rVfdlknYs--~LYsIsde~VqEIkIS~G-imll~~q~~~~~iPlkIlsIedG 267 (322)
+|||=|.=+--+.+..-...-+..| -+|+.+.=. +.+.-..+.++-+-++|. -||++.- =-+|+++|+|+
T Consensus 100 ~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-----~~ik~~~~~~k 174 (541)
T KOG4547|consen 100 KHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-----RQIKVLDIETK 174 (541)
T ss_pred CCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-----ceEEEEEccCc
Confidence 4455444333333333222333333 347766554 777888888999999855 4444332 35899999999
Q ss_pred ceeeeeeeccccCCcchhhhh
Q 020740 268 TVLKSFNHLLHRNKKVDFIEQ 288 (322)
Q Consensus 268 ~~l~~f~~~L~~sk~iqFiE~ 288 (322)
|.+..|...-..-+-+.|.+.
T Consensus 175 evv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 175 EVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred eEEEEecCCCcceEEEEEEEe
Confidence 999999965555667778776
No 90
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=34.25 E-value=5.3e+02 Score=26.44 Aligned_cols=157 Identities=20% Similarity=0.316 Sum_probs=100.0
Q ss_pred cccceeEEeeccchhhhhhccccceeeecc-cccEEEEecC-C-CCceEEEEeeecCCCeEEEEEeEecCCCceeeeeee
Q 020740 94 KRSKIIEIVAARDIVFALAQSGVCAAFCRE-TNQRICFLNV-T-ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRST 170 (322)
Q Consensus 94 kRS~V~EIv~a~diI~aL~~sG~c~af~r~-tn~~iC~lN~-s-~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~ 170 (322)
-+++|+.|-..+|-|++++.+-+ -+|.=- +=+.+|.+-. + |.- .=++-.. -|.+++. |-+.||-.+
T Consensus 93 f~~~I~~V~l~r~riVvvl~~~I-~VytF~~n~k~l~~~et~~NPkG-lC~~~~~-~~k~~La--------fPg~k~Gqv 161 (346)
T KOG2111|consen 93 FNSEIKAVKLRRDRIVVVLENKI-YVYTFPDNPKLLHVIETRSNPKG-LCSLCPT-SNKSLLA--------FPGFKTGQV 161 (346)
T ss_pred eccceeeEEEcCCeEEEEecCeE-EEEEcCCChhheeeeecccCCCc-eEeecCC-CCceEEE--------cCCCccceE
Confidence 47899999999888888777644 344333 1233332211 1 111 1222222 2344443 567888888
Q ss_pred ehhhhHhCCCCCCCcc------eeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec----ccceeeEE
Q 020740 171 RIEYIRRGKPDAGFAL------FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----DKNVQEIK 240 (322)
Q Consensus 171 ~~e~i~~gk~~~g~~L------Fe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs----de~VqEIk 240 (322)
-+.+|..-++++.... -....|.-+|- +|-|++.++--.|+||-.+=++|+++- .-++..|-
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt--------~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~ia 233 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGT--------LVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIA 233 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCcc--------EEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEE
Confidence 8888877666522111 12356666663 566777777778999999999999985 46889999
Q ss_pred EcCCEEEEEEecCCCeeEEEEEEeecCceee
Q 020740 241 ISPGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (322)
Q Consensus 241 IS~Gimll~~q~~~~~iPlkIlsIedG~~l~ 271 (322)
+||..-.+--.-.+.+ ++||+|++-+...
T Consensus 234 FSp~~s~LavsSdKgT--lHiF~l~~~~~~~ 262 (346)
T KOG2111|consen 234 FSPNSSWLAVSSDKGT--LHIFSLRDTENTE 262 (346)
T ss_pred eCCCccEEEEEcCCCe--EEEEEeecCCCCc
Confidence 9977766666556665 6899999755333
No 91
>TIGR02781 VirB9 P-type conjugative transfer protein VirB9. The VirB9 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in a type IV secretion system. VirB9 is a homolog of the F-type conjugative transfer system TraK protein (which is believed to be an outer membrane pore-forming secretin, TIGR02756) as well as the Ti system TrbG protein.
Probab=34.12 E-value=3.4e+02 Score=25.41 Aligned_cols=69 Identities=12% Similarity=0.253 Sum_probs=50.4
Q ss_pred eEEEEecCCCeEEEEeccCcEEEEEec-ccceeeEEEcCCEEEEEEecCCCeeEEEE--------EEeecCceeeeeeec
Q 020740 206 KVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISPGIMLLIFTKASGHVPLKI--------LSIEDGTVLKSFNHL 276 (322)
Q Consensus 206 kilty~aq~~~YrVfdlknYs~LYsIs-de~VqEIkIS~Gimll~~q~~~~~iPlkI--------lsIedG~~l~~f~~~ 276 (322)
+.++|++ +..|+|..-.+|...-++. +|.|+.+-+.|..= ....+..+++-+|= |.|-|-++.+.|.+.
T Consensus 31 ~~~~Y~p-~~v~~V~~~~g~~T~I~f~~gE~I~~v~~GDt~~-W~v~~~~n~i~IKP~~~~~~TNl~V~TnkR~Y~f~L~ 108 (243)
T TIGR02781 31 RTVVYNP-DDVVRVVTSYGYSTTIEFADDETIKTVAVGDSKA-WEVTPNGNKLFIKPTEKDWKTNMTVVTNKRSYVFDLT 108 (243)
T ss_pred EEEEcCC-CCEEEEEEECCEEEEEEeCCCCEEEEecccCCcc-eEEEcCCCEEEEEECCCCCCceEEEEECCeEEEEEEE
Confidence 4566665 5699999999999999998 78899888876533 33345567777775 667777777777643
No 92
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=33.33 E-value=64 Score=33.38 Aligned_cols=73 Identities=15% Similarity=0.392 Sum_probs=57.6
Q ss_pred EEecCCCceEEEEecCCCeEEEEecc------CcEEEEEeccc------------ceeeEEEcCC-EEEEEEecCCCeeE
Q 020740 198 VEFDDVNGKVLTYSAQDSIYKVFDLK------NYTMLYSISDK------------NVQEIKISPG-IMLLIFTKASGHVP 258 (322)
Q Consensus 198 VEFDdvNgkilty~aq~~~YrVfdlk------nYs~LYsIsde------------~VqEIkIS~G-imll~~q~~~~~iP 258 (322)
-||-...--+..|+...|+.|.-||+ .++.||+-+.+ -|-|||+|+. -.+| +..++.
T Consensus 219 aEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryil----sRDylt 294 (433)
T KOG1354|consen 219 AEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYIL----SRDYLT 294 (433)
T ss_pred hccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEE----Eeccce
Confidence 47888888999999999999999999 67788876633 2568899865 3333 457899
Q ss_pred EEEEEe-ecCceeeeee
Q 020740 259 LKILSI-EDGTVLKSFN 274 (322)
Q Consensus 259 lkIlsI-edG~~l~~f~ 274 (322)
+||.|+ ++.+++..+.
T Consensus 295 vk~wD~nme~~pv~t~~ 311 (433)
T KOG1354|consen 295 VKLWDLNMEAKPVETYP 311 (433)
T ss_pred eEEEeccccCCcceEEe
Confidence 999999 7888877654
No 93
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=33.18 E-value=71 Score=35.08 Aligned_cols=180 Identities=19% Similarity=0.263 Sum_probs=94.4
Q ss_pred cceeEEeeccchhhhhhccccc--eeeecccccEEE-EecCCCCceEEEEeeecCCCeEEEEEeEecCCCcee--eeeee
Q 020740 96 SKIIEIVAARDIVFALAQSGVC--AAFCRETNQRIC-FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSL--RCRST 170 (322)
Q Consensus 96 S~V~EIv~a~diI~aL~~sG~c--~af~r~tn~~iC-~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~L--kCr~~ 170 (322)
-.|.++.-|.-=-..+..||=. ..||..+++..- -+|..+.-=++|+=+-+.|-.+.. + ..-|+..| -||..
T Consensus 101 nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~-t--GgRDg~illWD~R~n 177 (720)
T KOG0321|consen 101 NAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFC-T--GGRDGEILLWDCRCN 177 (720)
T ss_pred ceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCccee-e--ccCCCcEEEEEEecc
Confidence 3455555553333345566644 457777666554 378888888888877765544433 2 22232322 23333
Q ss_pred e---hh------hh----------------HhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCc
Q 020740 171 R---IE------YI----------------RRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY 225 (322)
Q Consensus 171 ~---~e------~i----------------~~gk~~~g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknY 225 (322)
. .| |+ +.+|. ++...|.++- -|-|-| +..+.++.+.|++.|||||+.=
T Consensus 178 ~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA-~s~ti~ssvT-----vv~fkD-e~tlaSaga~D~~iKVWDLRk~ 250 (720)
T KOG0321|consen 178 GVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA-ASNTIFSSVT-----VVLFKD-ESTLASAGAADSTIKVWDLRKN 250 (720)
T ss_pred chhhHHHHhhhhhccccCCCCCCchhhcccccccc-ccCceeeeeE-----EEEEec-cceeeeccCCCcceEEEeeccc
Confidence 2 11 11 11111 1112222111 122333 4567888899999999999877
Q ss_pred EEEEEecccceeeEEEcCCEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEE
Q 020740 226 TMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQIL 305 (322)
Q Consensus 226 s~LYsIsde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~ 305 (322)
...|.-.- .++- ..+++ .-+-.+-.++. +.-++.+|+.-=-|.++--|
T Consensus 251 ~~~~r~ep---------~~~~---~~~t~-----------skrs~G~~nL~---------lDssGt~L~AsCtD~sIy~y 298 (720)
T KOG0321|consen 251 YTAYRQEP---------RGSD---KYPTH-----------SKRSVGQVNLI---------LDSSGTYLFASCTDNSIYFY 298 (720)
T ss_pred ccccccCC---------Cccc---CccCc-----------ccceeeeEEEE---------ecCCCCeEEEEecCCcEEEE
Confidence 76666441 1111 00111 11122222222 34567777777778888888
Q ss_pred Ecccccceeeee
Q 020740 306 DVRISLFLPLQL 317 (322)
Q Consensus 306 Dl~~~~~~~~~~ 317 (322)
||++-.+.|+++
T Consensus 299 nm~s~s~sP~~~ 310 (720)
T KOG0321|consen 299 NMRSLSISPVAE 310 (720)
T ss_pred eccccCcCchhh
Confidence 888777777764
No 94
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=32.02 E-value=2.4e+02 Score=27.22 Aligned_cols=52 Identities=23% Similarity=0.467 Sum_probs=34.0
Q ss_pred cCcEEEEEecccc--------------eeeEEEc-CCEEEEEE-ecCCC-----------ee---EEEEEEeecCceeee
Q 020740 223 KNYTMLYSISDKN--------------VQEIKIS-PGIMLLIF-TKASG-----------HV---PLKILSIEDGTVLKS 272 (322)
Q Consensus 223 knYs~LYsIsde~--------------VqEIkIS-~Gimll~~-q~~~~-----------~i---PlkIlsIedG~~l~~ 272 (322)
.+|+.++.++..+ .+|+.|. +|.+|+.. +++.. .| -+--+||+||++|-+
T Consensus 32 ~~y~~i~~v~~~~~~~~~~~~~~~~~d~He~~it~~gt~lvt~~~~~~~dls~~gg~~~g~i~d~~~~EiDi~Tgevlfe 111 (299)
T PF14269_consen 32 SSYEVIWNVSAGNDFGTPDGEPGSYADHHEFEITPDGTALVTAYNPTPADLSPVGGPEDGWILDDVFQEIDIETGEVLFE 111 (299)
T ss_pred CCCcEEEEEECCCcccccccccCccCCccceEEcCCCcEEEEEccceeccccccCcCCCccEecceeEEeccCCCCEEEE
Confidence 3577777777777 9999994 77776622 22211 11 134568899999997
Q ss_pred ee
Q 020740 273 FN 274 (322)
Q Consensus 273 f~ 274 (322)
..
T Consensus 112 W~ 113 (299)
T PF14269_consen 112 WS 113 (299)
T ss_pred EE
Confidence 65
No 95
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=31.19 E-value=35 Score=34.52 Aligned_cols=92 Identities=20% Similarity=0.308 Sum_probs=54.8
Q ss_pred cceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceeecccCCC
Q 020740 116 VCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWP 195 (322)
Q Consensus 116 ~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~~~L~~P 195 (322)
-|-.|..-+-+.+|.- ..++ +|.|..+.+=|..-+.+|.. .+++--|++..-. |
T Consensus 127 ~cvew~Pns~klasm~---dn~i---~l~~l~ess~~vaev~ss~s-------------------~e~~~~ftsg~Ws-p 180 (370)
T KOG1007|consen 127 NCVEWEPNSDKLASMD---DNNI---VLWSLDESSKIVAEVLSSES-------------------AEMRHSFTSGAWS-P 180 (370)
T ss_pred eeEEEcCCCCeeEEec---cCce---EEEEcccCcchheeeccccc-------------------ccccceecccccC-C
Confidence 5666666555555543 2222 45666666655443333322 1234455555433 2
Q ss_pred CeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEE
Q 020740 196 GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIK 240 (322)
Q Consensus 196 gFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~VqEIk 240 (322)
--|.|.... .++++...||+++.++.|+|.|-+.|-+|
T Consensus 181 ----HHdgnqv~t---t~d~tl~~~D~RT~~~~~sI~dAHgq~vr 218 (370)
T KOG1007|consen 181 ----HHDGNQVAT---TSDSTLQFWDLRTMKKNNSIEDAHGQRVR 218 (370)
T ss_pred ----CCccceEEE---eCCCcEEEEEccchhhhcchhhhhcceee
Confidence 134555444 58999999999999999999998866544
No 96
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=30.83 E-value=2e+02 Score=28.69 Aligned_cols=91 Identities=21% Similarity=0.332 Sum_probs=56.2
Q ss_pred CCCeEEEEeccCcEEEEEecccceeeEEE--c--CCEEEEEEecCCC-----eeE--EEEEEeecCceeeeeeeccccCC
Q 020740 213 QDSIYKVFDLKNYTMLYSISDKNVQEIKI--S--PGIMLLIFTKASG-----HVP--LKILSIEDGTVLKSFNHLLHRNK 281 (322)
Q Consensus 213 q~~~YrVfdlknYs~LYsIsde~VqEIkI--S--~Gimll~~q~~~~-----~iP--lkIlsIedG~~l~~f~~~L~~sk 281 (322)
++.-||-..+.++ -.++.+ ++.+.++ + +|.++++..+++- .-| +.|++. .|+.+.++...-.+--
T Consensus 9 ~d~~Yrk~~ly~m--~W~~~~-~l~~~~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv 84 (410)
T PF04841_consen 9 GDVYYRKRELYSM--SWSLKD-DLSDYIVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIV 84 (410)
T ss_pred CCEEEEEEEeccC--CCCccc-cccceeEEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEE
Confidence 3455776666543 344432 3434333 3 5888888777332 223 444443 6888888775333333
Q ss_pred cchhhhhccceeEEEecCCceeEEEccc
Q 020740 282 KVDFIEQFNEKLLVKQENENLQILDVRI 309 (322)
Q Consensus 282 ~iqFiE~f~EkLLIKQE~~~LqI~Dl~~ 309 (322)
.+.|-+ +|.|++=+++...++||+..
T Consensus 85 ~~~wt~--~e~LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 85 GMGWTD--DEELVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEECC--CCeEEEEEcCCEEEEEeCCC
Confidence 445544 78999999999999999953
No 97
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=30.42 E-value=4.7e+02 Score=24.65 Aligned_cols=93 Identities=14% Similarity=0.084 Sum_probs=56.1
Q ss_pred CCCeEEEEeccCcEEEEEecccceeeEEEcCCEEEEEEecCCCeeEEEEEEeecCceeeeeeeccc--cCCcchhhhhcc
Q 020740 213 QDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH--RNKKVDFIEQFN 290 (322)
Q Consensus 213 q~~~YrVfdlknYs~LYsIsde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~--~sk~iqFiE~f~ 290 (322)
.++....||+++-+.++..+.......-+.+|.+.+.. . . =-+..++..||+.+-+...+-. .+.++ .-+
T Consensus 249 ~~g~l~a~d~~tG~~~W~~~~~~~~~p~~~~~~vyv~~-~-~--G~l~~~d~~tG~~~W~~~~~~~~~~ssp~----i~g 320 (377)
T TIGR03300 249 YQGRVAALDLRSGRVLWKRDASSYQGPAVDDNRLYVTD-A-D--GVVVALDRRSGSELWKNDELKYRQLTAPA----VVG 320 (377)
T ss_pred cCCEEEEEECCCCcEEEeeccCCccCceEeCCEEEEEC-C-C--CeEEEEECCCCcEEEccccccCCccccCE----EEC
Confidence 34555666666666666554333334445666664432 1 1 2367788889998876632111 12222 257
Q ss_pred ceeEEEecCCceeEEEcccccce
Q 020740 291 EKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 291 EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
++|++--++..|.++|..+.+++
T Consensus 321 ~~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 321 GYLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred CEEEEEeCCCEEEEEECCCCCEE
Confidence 89999888889999998877665
No 98
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=29.54 E-value=1.6e+02 Score=33.52 Aligned_cols=106 Identities=12% Similarity=0.240 Sum_probs=74.0
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc----cce--eeEEEc------CCEEEEEEecCCCeeEEEEEEee
Q 020740 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KNV--QEIKIS------PGIMLLIFTKASGHVPLKILSIE 265 (322)
Q Consensus 198 VEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsd----e~V--qEIkIS------~Gimll~~q~~~~~iPlkIlsIe 265 (322)
+.|| .||..|+-+.-+|..+|||+.+-++...+.+ .++ .+|... +|.+++ -++.+. +++++..
T Consensus 144 l~~~-p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~--~~~d~~--Vkvy~r~ 218 (933)
T KOG1274|consen 144 LSYD-PKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAV--PPVDNT--VKVYSRK 218 (933)
T ss_pred eeEc-CCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEe--eccCCe--EEEEccC
Confidence 4454 5899999999999999999999987766642 222 233332 355533 233333 5899999
Q ss_pred cCceeeeeeeccccC--CcchhhhhccceeEEEecCCceeEEEccc
Q 020740 266 DGTVLKSFNHLLHRN--KKVDFIEQFNEKLLVKQENENLQILDVRI 309 (322)
Q Consensus 266 dG~~l~~f~~~L~~s--k~iqFiE~f~EkLLIKQE~~~LqI~Dl~~ 309 (322)
+++++..+--.++++ ..++| -.-+.||-----++-+.|||+-+
T Consensus 219 ~we~~f~Lr~~~~ss~~~~~~w-sPnG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 219 GWELQFKLRDKLSSSKFSDLQW-SPNGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CceeheeecccccccceEEEEE-cCCCcEEeeeccCCcEEEEeccc
Confidence 999999776545545 34443 34488888888889999999975
No 99
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=29.13 E-value=1.9e+02 Score=32.04 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=12.9
Q ss_pred ecCCceeEEEcccccce
Q 020740 297 QENENLQILDVRISLFL 313 (322)
Q Consensus 297 QE~~~LqI~Dl~~~~~~ 313 (322)
-|+..+.|||+.+.++.
T Consensus 596 ~ed~~I~iWDl~~~~~v 612 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSLV 612 (707)
T ss_pred ccCCcEEEEEcCCCcch
Confidence 46788889999886653
No 100
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=28.58 E-value=62 Score=36.37 Aligned_cols=29 Identities=34% Similarity=0.716 Sum_probs=0.0
Q ss_pred ecCCCceEEEEecCCCeEEEEeccC-------cEEEE
Q 020740 200 FDDVNGKVLTYSAQDSIYKVFDLKN-------YTMLY 229 (322)
Q Consensus 200 FDdvNgkilty~aq~~~YrVfdlkn-------Ys~LY 229 (322)
||++|.|+..-=-.-+.| |||++| |++||
T Consensus 332 Fdet~~klscVYndhSlY-vWDvrD~~kvgk~~s~ly 367 (1080)
T KOG1408|consen 332 FDETTDKLSCVYNDHSLY-VWDVRDVNKVGKCSSMLY 367 (1080)
T ss_pred ecCCCceEEEEEcCceEE-EEeccccccccceeeeee
No 101
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=28.53 E-value=1.4e+02 Score=30.91 Aligned_cols=20 Identities=15% Similarity=0.615 Sum_probs=17.3
Q ss_pred CceEEEEecCCCeEEEEecc
Q 020740 204 NGKVLTYSAQDSIYKVFDLK 223 (322)
Q Consensus 204 Ngkilty~aq~~~YrVfdlk 223 (322)
|.|.+.-+.-|.+||.||.+
T Consensus 325 tQrLVvTsSrDtTFRLWDFR 344 (481)
T KOG0300|consen 325 TQRLVVTSSRDTTFRLWDFR 344 (481)
T ss_pred cceEEEEeccCceeEeccch
Confidence 67777778889999999987
No 102
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=27.66 E-value=2e+02 Score=31.88 Aligned_cols=118 Identities=17% Similarity=0.301 Sum_probs=69.9
Q ss_pred ccCCCCeE---EecCCCceEEEEecCCCeEEEEeccCcEEEEE--ecccceeeEEEc-C--CEEEEEEecCCCeeEEEEE
Q 020740 191 SLKWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS--ISDKNVQEIKIS-P--GIMLLIFTKASGHVPLKIL 262 (322)
Q Consensus 191 ~L~~PgFV---EFDdvNgkilty~aq~~~YrVfdlknYs~LYs--Isde~VqEIkIS-~--Gimll~~q~~~~~iPlkIl 262 (322)
...||+|| +|.+++++=-.==.=|+-.|+|+..+-.-++- +. +=|--+-.+ | |.++=.+.+ .-.++
T Consensus 405 ~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G-----~C~fY 478 (712)
T KOG0283|consen 405 VFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNG-----YCRFY 478 (712)
T ss_pred EEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEecc-----EEEEE
Confidence 34678885 79999998655334488899999888774432 21 222223333 2 222222221 12344
Q ss_pred EeecCceeeeeeeccccCCc--------chhhhhccceeEEEecCCceeEEEccccccee
Q 020740 263 SIEDGTVLKSFNHLLHRNKK--------VDFIEQFNEKLLVKQENENLQILDVRISLFLP 314 (322)
Q Consensus 263 sIedG~~l~~f~~~L~~sk~--------iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~~ 314 (322)
+.++=+...++-..+++.|+ +||.=.-.+++||--+|+.+||||++..+++.
T Consensus 479 ~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~ 538 (712)
T KOG0283|consen 479 DTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVH 538 (712)
T ss_pred EccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhh
Confidence 44444444444333443332 56776667799999999999999997766654
No 103
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=26.67 E-value=4.8e+02 Score=24.02 Aligned_cols=76 Identities=14% Similarity=0.239 Sum_probs=47.8
Q ss_pred CCCeEEecCCCceEEEEecCCCeEEEEeccCcE----EEEEec-ccceeeEEEc-CCEEEEEEecCCCeeEEEEEEeecC
Q 020740 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT----MLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDG 267 (322)
Q Consensus 194 ~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs----~LYsIs-de~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG 267 (322)
||.=+.|+.-+..+.+.+..++...||++..-. .+=.++ .+....+.++ +|-.|++.....++|-+-=++-+||
T Consensus 229 ~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g 308 (330)
T PRK11028 229 WAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETG 308 (330)
T ss_pred cceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCC
Confidence 555588887666677766678899999985433 122222 2244577887 6667777777677655444444677
Q ss_pred ce
Q 020740 268 TV 269 (322)
Q Consensus 268 ~~ 269 (322)
..
T Consensus 309 ~l 310 (330)
T PRK11028 309 LL 310 (330)
T ss_pred cE
Confidence 54
No 104
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=26.65 E-value=2.3e+02 Score=29.35 Aligned_cols=99 Identities=20% Similarity=0.337 Sum_probs=67.0
Q ss_pred ccchhhhhhccccceeeecccccEEEEecCCCCc----eEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhh---H
Q 020740 104 ARDIVFALAQSGVCAAFCRETNQRICFLNVTADE----VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI---R 176 (322)
Q Consensus 104 a~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dE----vIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i---~ 176 (322)
.-|++++-++.-+-+.||-.| +.||+-.+|+. .|-++=||..-.-++|.| +|.+-.|- -.++-+|+ .
T Consensus 227 sGefllvgTdHp~~rlYdv~T--~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS---kDG~Iklw-DGVS~rCv~t~~ 300 (430)
T KOG0640|consen 227 SGEFLLVGTDHPTLRLYDVNT--YQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS---KDGAIKLW-DGVSNRCVRTIG 300 (430)
T ss_pred CCceEEEecCCCceeEEeccc--eeEeeecCcccccccceeEEEecCCccEEEEec---cCCcEEee-ccccHHHHHHHH
Confidence 468999999999999999955 58998777775 788999998777777755 44422111 11222233 1
Q ss_pred --hCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEec
Q 020740 177 --RGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL 222 (322)
Q Consensus 177 --~gk~~~g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdl 222 (322)
.|+.......|+ -|||-+.-+.-|+..|.|.+
T Consensus 301 ~AH~gsevcSa~Ft--------------kn~kyiLsSG~DS~vkLWEi 334 (430)
T KOG0640|consen 301 NAHGGSEVCSAVFT--------------KNGKYILSSGKDSTVKLWEI 334 (430)
T ss_pred hhcCCceeeeEEEc--------------cCCeEEeecCCcceeeeeee
Confidence 222222233443 48998988999999999864
No 105
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=26.16 E-value=1.2e+02 Score=31.11 Aligned_cols=72 Identities=18% Similarity=0.314 Sum_probs=42.6
Q ss_pred eeeeccCCCCcccccccccccccceeEEeeccchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEE
Q 020740 74 EEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLIT 153 (322)
Q Consensus 74 ~~fD~~d~k~~~~~~lpfl~kRS~V~EIv~a~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlIt 153 (322)
.+|.-++.+...++.+|+ .+..|.. ..++.+..++--..||-.|++.++-++.++ |+.++.|+.++-+.+
T Consensus 92 ~I~kn~~~~~~k~i~~~~-----~~~~If~--G~LL~~~~~~~i~~yDw~~~~~i~~i~v~~---vk~V~Ws~~g~~val 161 (443)
T PF04053_consen 92 KIYKNFKNEVVKSIKLPF-----SVEKIFG--GNLLGVKSSDFICFYDWETGKLIRRIDVSA---VKYVIWSDDGELVAL 161 (443)
T ss_dssp EEEETTEE-TT-----SS------EEEEE---SSSEEEEETTEEEEE-TTT--EEEEESS-E----EEEEE-TTSSEEEE
T ss_pred EEEEcCccccceEEcCCc-----ccceEEc--CcEEEEECCCCEEEEEhhHcceeeEEecCC---CcEEEEECCCCEEEE
Confidence 444455555545665555 5777877 667777788866789999999999999886 889999987676666
Q ss_pred EE
Q 020740 154 VS 155 (322)
Q Consensus 154 vS 155 (322)
++
T Consensus 162 ~t 163 (443)
T PF04053_consen 162 VT 163 (443)
T ss_dssp E-
T ss_pred Ee
Confidence 53
No 106
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=25.97 E-value=8.4e+02 Score=26.15 Aligned_cols=182 Identities=15% Similarity=0.248 Sum_probs=112.8
Q ss_pred hhhhhhccccceeeecccccEEE-EecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCc
Q 020740 107 IVFALAQSGVCAAFCRETNQRIC-FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185 (322)
Q Consensus 107 iI~aL~~sG~c~af~r~tn~~iC-~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~ 185 (322)
+++|=-.+|.-.+|| .+-+.|- .++. +..=||.++|-...+++. +.++|+ ..-|-..++--|
T Consensus 82 LlaaGD~sG~V~vfD-~k~r~iLR~~~a-h~apv~~~~f~~~d~t~l---~s~sDd-~v~k~~d~s~a~----------- 144 (487)
T KOG0310|consen 82 LLAAGDESGHVKVFD-MKSRVILRQLYA-HQAPVHVTKFSPQDNTML---VSGSDD-KVVKYWDLSTAY----------- 144 (487)
T ss_pred EEEccCCcCcEEEec-cccHHHHHHHhh-ccCceeEEEecccCCeEE---EecCCC-ceEEEEEcCCcE-----------
Confidence 456677899999999 4333333 4443 444678888887766654 457888 444444332111
Q ss_pred ceeecccCCCCeEE---ecCCCceEEEEecCCCeEEEEeccCc-EEEEEecccceeeEEE--cCCEEEEEEecCCCeeEE
Q 020740 186 LFESESLKWPGFVE---FDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSISDKNVQEIKI--SPGIMLLIFTKASGHVPL 259 (322)
Q Consensus 186 LFe~~~L~~PgFVE---FDdvNgkilty~aq~~~YrVfdlknY-s~LYsIsde~VqEIkI--S~Gimll~~q~~~~~iPl 259 (322)
. ..+-..|-+||- +=+.|+-|+.--.=||..|+||.+.- +.++++.+..=-|-.+ .+|..++..-++ .+
T Consensus 145 v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn----~v 219 (487)
T KOG0310|consen 145 V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN----SV 219 (487)
T ss_pred E-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC----eE
Confidence 2 446677777774 55677777776666999999999988 8999999876555332 344443333332 37
Q ss_pred EEEEeecCce-eeeeeeccccCCcchhhhh--ccceeEEEecCCceeEEEcccccce
Q 020740 260 KILSIEDGTV-LKSFNHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 260 kIlsIedG~~-l~~f~~~L~~sk~iqFiE~--f~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
|+.|+-+|-. +.++.. ++|.|-=|-. -+..||=--=|...+|||+.|-+.+
T Consensus 220 kVWDl~~G~qll~~~~~---H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv 273 (487)
T KOG0310|consen 220 KVWDLTTGGQLLTSMFN---HNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVV 273 (487)
T ss_pred EEEEecCCceehhhhhc---ccceEEEEEeecCCceEeecccccceEEEEccceEEE
Confidence 9999986544 333321 1333322211 2256666666788899998776543
No 107
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=25.77 E-value=3e+02 Score=28.53 Aligned_cols=33 Identities=6% Similarity=0.076 Sum_probs=28.0
Q ss_pred ccchhhhhhccccceeeecccccEEEEecCCCC
Q 020740 104 ARDIVFALAQSGVCAAFCRETNQRICFLNVTAD 136 (322)
Q Consensus 104 a~diI~aL~~sG~c~af~r~tn~~iC~lN~s~d 136 (322)
+++.|++-+..|.-.|+|..||+.+-..++...
T Consensus 68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~ 100 (527)
T TIGR03075 68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLP 100 (527)
T ss_pred ECCEEEEECCCCcEEEEECCCCceeeEecCCCC
Confidence 478888888889999999999999998877543
No 108
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=25.46 E-value=5.4e+02 Score=26.29 Aligned_cols=105 Identities=15% Similarity=0.265 Sum_probs=62.6
Q ss_pred cCCCCe---EEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEc-CCEEEEEEecCCCee-------EEE
Q 020740 192 LKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHV-------PLK 260 (322)
Q Consensus 192 L~~PgF---VEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS-~Gimll~~q~~~~~i-------Plk 260 (322)
..|+|= .+|+. +|--++-...|...-.|+..+=. ||+.-+|.. +-+|=+-+.+.+|+| -+.
T Consensus 44 ~gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdc-------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDC-------ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred CCCcceEEEEEECC-CCCeEeecCCcceEEEEeccccc-------cceeeeccccceeEeeeeccCCCEEEEecCCceEE
Confidence 345554 47888 78777777778888888733221 222222222 223334444444444 367
Q ss_pred EEEeecCceeeeee------eccccCCcchhhhhccceeEEE-ecCCceeEEEccccc
Q 020740 261 ILSIEDGTVLKSFN------HLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRISL 311 (322)
Q Consensus 261 IlsIedG~~l~~f~------~~L~~sk~iqFiE~f~EkLLIK-QE~~~LqI~Dl~~~~ 311 (322)
.+|+|||+.+..++ .-+++++ .|-.|+.- +.+..+++||+|..+
T Consensus 116 ~wD~~tG~~~rk~k~h~~~vNs~~p~r-------rg~~lv~SgsdD~t~kl~D~R~k~ 166 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKGHTSFVNSLDPSR-------RGPQLVCSGSDDGTLKLWDIRKKE 166 (338)
T ss_pred EEecccceeeehhccccceeeecCccc-------cCCeEEEecCCCceEEEEeecccc
Confidence 89999999998553 2333222 33344443 588999999999654
No 109
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.20 E-value=1.7e+02 Score=33.72 Aligned_cols=100 Identities=20% Similarity=0.395 Sum_probs=52.6
Q ss_pred EecCCCc--eEEEEecC---------CCeEEEEeccCcEEEEEecccceeeEEEcCCEEEEEEec-------CCCeeEEE
Q 020740 199 EFDDVNG--KVLTYSAQ---------DSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTK-------ASGHVPLK 260 (322)
Q Consensus 199 EFDdvNg--kilty~aq---------~~~YrVfdlknYs~LYsIsde~VqEIkIS~Gimll~~q~-------~~~~iPlk 260 (322)
+||+-.| |-+.+|++ |-..|||++++=.|||.+. -|.-=||-. ++-+ ++.---++
T Consensus 46 rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~-GHlDYVRt~------~FHheyPWIlSASDDQTIr 118 (1202)
T KOG0292|consen 46 RFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLL-GHLDYVRTV------FFHHEYPWILSASDDQTIR 118 (1202)
T ss_pred hhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhc-cccceeEEe------eccCCCceEEEccCCCeEE
Confidence 3555444 33555555 5567899999999999997 222222221 1111 11122356
Q ss_pred EEEeecCceeeeeeeccccCCcchhhhhcc--ceeEEEe-cCCceeEEEccc
Q 020740 261 ILSIEDGTVLKSFNHLLHRNKKVDFIEQFN--EKLLVKQ-ENENLQILDVRI 309 (322)
Q Consensus 261 IlsIedG~~l~~f~~~L~~sk~iqFiE~f~--EkLLIKQ-E~~~LqI~Dl~~ 309 (322)
|.+-|+++++.-+.- ++-=|= --||+ |-|++-- =+..+++||+.-
T Consensus 119 IWNwqsr~~iavltG---HnHYVM-cAqFhptEDlIVSaSLDQTVRVWDisG 166 (1202)
T KOG0292|consen 119 IWNWQSRKCIAVLTG---HNHYVM-CAQFHPTEDLIVSASLDQTVRVWDISG 166 (1202)
T ss_pred EEeccCCceEEEEec---CceEEE-eeccCCccceEEEecccceEEEEeecc
Confidence 777777777765430 010000 11121 2333332 578999999863
No 110
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=24.79 E-value=1.7e+02 Score=18.23 Aligned_cols=22 Identities=18% Similarity=0.371 Sum_probs=14.4
Q ss_pred EecCCCceEEEEecCCCeEEEEe
Q 020740 199 EFDDVNGKVLTYSAQDSIYKVFD 221 (322)
Q Consensus 199 EFDdvNgkilty~aq~~~YrVfd 221 (322)
.|..-+ ..++-...|+..+|||
T Consensus 18 ~~~~~~-~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 18 AWSPDG-NFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEETTS-SEEEEEETTSEEEEEE
T ss_pred EEeccc-ccceeeCCCCEEEEEC
Confidence 444444 4444456899999997
No 111
>PRK01742 tolB translocation protein TolB; Provisional
Probab=23.87 E-value=7e+02 Score=24.50 Aligned_cols=103 Identities=17% Similarity=0.205 Sum_probs=56.5
Q ss_pred CceEEEEecC---CCeEEEEeccCcE--EEEEecccceeeEEEc-CCEEEEEEecCCCeeEEEEEEeecCceeeeeeecc
Q 020740 204 NGKVLTYSAQ---DSIYKVFDLKNYT--MLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL 277 (322)
Q Consensus 204 Ngkilty~aq---~~~YrVfdlknYs--~LYsIsde~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L 277 (322)
+|+-++|-.. +....+||+.+-+ .+-... .+...+..| ||-.|++.....+.+-+-++++.+|+...-+.+.
T Consensus 214 DG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~-g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~- 291 (429)
T PRK01742 214 DGSKLAYVSFENKKSQLVVHDLRSGARKVVASFR-GHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGA- 291 (429)
T ss_pred CCCEEEEEEecCCCcEEEEEeCCCCceEEEecCC-CccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCC-
Confidence 4665666443 2467889987643 333333 345568888 4555555444445556777888887754322211
Q ss_pred ccCCcchhhhhccceeEEEe-cCCceeEEEccc
Q 020740 278 HRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRI 309 (322)
Q Consensus 278 ~~sk~iqFiE~f~EkLLIKQ-E~~~LqI~Dl~~ 309 (322)
.....+.|-- =+++|++-- .+...+||++..
T Consensus 292 ~~~~~~~wSp-DG~~i~f~s~~~g~~~I~~~~~ 323 (429)
T PRK01742 292 GNNTEPSWSP-DGQSILFTSDRSGSPQVYRMSA 323 (429)
T ss_pred CCcCCEEECC-CCCEEEEEECCCCCceEEEEEC
Confidence 1122333322 255666543 456778888743
No 112
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=23.86 E-value=3.6e+02 Score=28.06 Aligned_cols=114 Identities=21% Similarity=0.246 Sum_probs=0.0
Q ss_pred EecCCCceEEEEecCCCeEEEEeccCcEEEEEec------------------------ccceeeEEEcCCEEEEEEe---
Q 020740 199 EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS------------------------DKNVQEIKISPGIMLLIFT--- 251 (322)
Q Consensus 199 EFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs------------------------de~VqEIkIS~Gimll~~q--- 251 (322)
||=+.-.|++|-.- +|+.++||+|+=+.+..++ +-.+.=.-.+-|-|+....
T Consensus 197 ~f~pdGKr~~tgy~-dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~ 275 (399)
T KOG0296|consen 197 EFIPDGKRILTGYD-DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTV 275 (399)
T ss_pred cccCCCceEEEEec-CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCC
Q ss_pred -----------------cCCCeeEEEEEEeecCceee------eeeeccccCCcchhhhhcc-ceeEEEecCCceeEEEc
Q 020740 252 -----------------KASGHVPLKILSIEDGTVLK------SFNHLLHRNKKVDFIEQFN-EKLLVKQENENLQILDV 307 (322)
Q Consensus 252 -----------------~~~~~iPlkIlsIedG~~l~------~f~~~L~~sk~iqFiE~f~-EkLLIKQE~~~LqI~Dl 307 (322)
|-.+.+||.-+.--||++.- .+.|...+...|-=+--.| .|||--=-|.++++||.
T Consensus 276 ~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDa 355 (399)
T KOG0296|consen 276 PELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDA 355 (399)
T ss_pred ccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcCcchheeeccCceEEeeec
Q ss_pred ccccce
Q 020740 308 RISLFL 313 (322)
Q Consensus 308 ~~~~~~ 313 (322)
|+-.+.
T Consensus 356 RtG~l~ 361 (399)
T KOG0296|consen 356 RTGQLK 361 (399)
T ss_pred cccceE
No 113
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=23.70 E-value=5.3e+02 Score=22.99 Aligned_cols=107 Identities=13% Similarity=0.221 Sum_probs=63.0
Q ss_pred CCCeEEecCCCceEEEEecCCCeEEEEecc--CcEEEEEecccc------------eeeEEEcCCEEEEEEecCCCeeEE
Q 020740 194 WPGFVEFDDVNGKVLTYSAQDSIYKVFDLK--NYTMLYSISDKN------------VQEIKISPGIMLLIFTKASGHVPL 259 (322)
Q Consensus 194 ~PgFVEFDdvNgkilty~aq~~~YrVfdlk--nYs~LYsIsde~------------VqEIkIS~Gimll~~q~~~~~iPl 259 (322)
-|-.+.|. +..+.. +-.+.|-+-|+. +.+.|+..++.. +.=++++++-+|+.++. +
T Consensus 140 ~~~~i~~~--~~~i~v--~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Ll~~~~------~ 209 (275)
T PF00780_consen 140 PPSSIAFL--GNKICV--GTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLSDNEFLLCYDN------I 209 (275)
T ss_pred CcEEEEEe--CCEEEE--EeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeCCceEEEEecc------e
Confidence 45566776 333333 225668888887 444666555543 33344555555555432 2
Q ss_pred EEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEEcccccce
Q 020740 260 KILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 260 kIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
-++==.+|++...-. +.=+..+..+.....||+.=.++. +.|+|+.+.++.
T Consensus 210 g~fv~~~G~~~r~~~--i~W~~~p~~~~~~~pyli~~~~~~-iEV~~~~~~~lv 260 (275)
T PF00780_consen 210 GVFVNKNGEPSRKST--IQWSSAPQSVAYSSPYLIAFSSNS-IEVRSLETGELV 260 (275)
T ss_pred EEEEcCCCCcCcccE--EEcCCchhEEEEECCEEEEECCCE-EEEEECcCCcEE
Confidence 333333666555222 222445666777888999988866 999999999773
No 114
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=23.56 E-value=7.2e+02 Score=24.53 Aligned_cols=112 Identities=13% Similarity=0.088 Sum_probs=66.0
Q ss_pred hhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcce
Q 020740 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187 (322)
Q Consensus 108 I~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LF 187 (322)
+++...+|--++.|..|++.+-.|.... .+-.++.+..+...+.+.| .|. .++.=|+..+|. +=
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr~~yv~~---rdg-------~vsviD~~~~~~-----v~ 72 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPDGRYLYVAN---RDG-------TVSVIDLATGKV-----VA 72 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT-SSEEEEEE---TTS-------EEEEEETTSSSE-----EE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCCCCEEEEEc---CCC-------eEEEEECCcccE-----EE
Confidence 3567788999999999999999998753 3433455555444444422 233 133334444442 11
Q ss_pred eecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccc
Q 020740 188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN 235 (322)
Q Consensus 188 e~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~ 235 (322)
+=..=..|--+.+......+++.+-..+.+.|||.++.+.+..|+...
T Consensus 73 ~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~ 120 (369)
T PF02239_consen 73 TIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGG 120 (369)
T ss_dssp EEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--E
T ss_pred EEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccc
Confidence 112233466677776666677888889999999999999999998653
No 115
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=23.47 E-value=3.5e+02 Score=26.98 Aligned_cols=118 Identities=16% Similarity=0.333 Sum_probs=71.4
Q ss_pred ceeecccCCCCeEEecCCCceEEE----------EecCCCeEEEEeccCcEEEEEecc---------cceeeEEEcC-CE
Q 020740 186 LFESESLKWPGFVEFDDVNGKVLT----------YSAQDSIYKVFDLKNYTMLYSISD---------KNVQEIKISP-GI 245 (322)
Q Consensus 186 LFe~~~L~~PgFVEFDdvNgkilt----------y~aq~~~YrVfdlknYs~LYsIsd---------e~VqEIkIS~-Gi 245 (322)
++.++-=+--||--+-.-.|-||+ --.||.+.|||||+--+++-.+-. .-|..+-+.| |-
T Consensus 165 iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgr 244 (350)
T KOG0641|consen 165 IYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGR 244 (350)
T ss_pred EEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcc
Confidence 333333333455555555555553 346899999999999998876642 2344455554 33
Q ss_pred EEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEEccc
Q 020740 246 MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDVRI 309 (322)
Q Consensus 246 mll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~ 309 (322)
+|+.-+..++ -++.+|.-|..+.+|- |++.+|.-.. .---|||----+..+++-||.-
T Consensus 245 ll~sg~~dss---c~lydirg~r~iq~f~---phsadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 245 LLASGHADSS---CMLYDIRGGRMIQRFH---PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred eeeeccCCCc---eEEEEeeCCceeeeeC---CCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 3333333333 4689999999998875 5566665322 2234666666666777766643
No 116
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=23.02 E-value=7.4e+02 Score=27.35 Aligned_cols=114 Identities=18% Similarity=0.227 Sum_probs=63.8
Q ss_pred EEeeccchhhhhhccccceeeecccccEEEEecCC-CCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhC
Q 020740 100 EIVAARDIVFALAQSGVCAAFCRETNQRICFLNVT-ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRG 178 (322)
Q Consensus 100 EIv~a~diI~aL~~sG~c~af~r~tn~~iC~lN~s-~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~g 178 (322)
+.++-+++++.++..|..---+...-+.. .++-. .|+++. ++.-..++.|+++| +.=++..++..+|..|
T Consensus 502 dlI~~e~~lVllTk~GyIKR~~l~~f~~~-aikLke~D~Lv~-v~~~~t~d~LllfT-------~~Grv~r~~~~eIP~g 572 (742)
T PRK05561 502 ALIPDEPVTVVLSKKGWVRRAKGHSIDAS-GLSFKEGDSLLF-AFEARTTDKLLLFT-------STGRVYSLPVHELPSA 572 (742)
T ss_pred hcccCcceEEEEecCCEEEeccchhhhhh-ccccCCCCeEEE-EEEecCCCeEEEEE-------CCCcEEEeEHHhCCCc
Confidence 45667889999999998754433221111 34433 355554 66666778888877 4456777778888888
Q ss_pred CCCCCCcceeecccCCC-----CeEEecCCCceEEEEecCCCeEEEEeccCcE
Q 020740 179 KPDAGFALFESESLKWP-----GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT 226 (322)
Q Consensus 179 k~~~g~~LFe~~~L~~P-----gFVEFDdvNgkilty~aq~~~YrVfdlknYs 226 (322)
+ ..|.|+-.--.|. | +.+.+++ +..++.. .+.|.-|.-++.+|.
T Consensus 573 r-a~Gv~i~~~i~L~-~gE~Iv~~~~~~~-~~~lllv-T~~G~~KRt~lse~~ 621 (742)
T PRK05561 573 R-GDGEPLTGLVDLA-PGEEIVHVLAFDP-DQKLLLA-SSAGYGFVVTLEDLV 621 (742)
T ss_pred C-CCCcChhhhcCCC-CCceEEEEEEEcC-CcEEEEE-ECCCcEEEEEhhhcc
Confidence 7 6677544222222 1 1333443 2223332 344555555555554
No 117
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=22.97 E-value=56 Score=25.20 Aligned_cols=30 Identities=37% Similarity=0.759 Sum_probs=22.3
Q ss_pred eecccCCCCeEEecCCCceEEEEecCCCeEEE
Q 020740 188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKV 219 (322)
Q Consensus 188 e~~~L~~PgFVEFDdvNgkilty~aq~~~YrV 219 (322)
+.+..+|||--.|= -++|+.||+....|+|
T Consensus 10 e~V~~rWP~s~lYY--e~kV~~~d~~~~~y~V 39 (55)
T PF09465_consen 10 EVVMVRWPGSSLYY--EGKVLSYDSKSDRYTV 39 (55)
T ss_dssp -EEEEE-TTTS-EE--EEEEEEEETTTTEEEE
T ss_pred CEEEEECCCCCcEE--EEEEEEecccCceEEE
Confidence 45788999977763 3899999999988876
No 118
>COG4573 GatZ Predicted tagatose 6-phosphate kinase [Carbohydrate transport and metabolism]
Probab=22.60 E-value=35 Score=35.06 Aligned_cols=21 Identities=48% Similarity=0.792 Sum_probs=18.0
Q ss_pred cccCCCCeEEecCCCceEEEEecC
Q 020740 190 ESLKWPGFVEFDDVNGKVLTYSAQ 213 (322)
Q Consensus 190 ~~L~~PgFVEFDdvNgkilty~aq 213 (322)
...+.|| ||||+.| |++|++|
T Consensus 221 a~VVQPG-VEFd~~~--Vi~Y~p~ 241 (426)
T COG4573 221 AIVVQPG-VEFDHTN--VIDYQPQ 241 (426)
T ss_pred eeeecCC-cccCCCc--eeecCHH
Confidence 4567899 8999887 8999998
No 119
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=22.16 E-value=44 Score=32.98 Aligned_cols=12 Identities=67% Similarity=1.132 Sum_probs=9.6
Q ss_pred CCCCCCccccee
Q 020740 1 MEGGGGGGRRIS 12 (322)
Q Consensus 1 ~~~~~~~~~~~~ 12 (322)
||||||++++..
T Consensus 1 ~~~~~~~~~~~~ 12 (430)
T PLN00145 1 MEGGGGGGGGGH 12 (430)
T ss_pred CCCCCCCCCCCC
Confidence 899999987643
No 120
>PF11763 DIPSY: Cell-wall adhesin ligand-binding C-terminal; InterPro: IPR021746 The DIPSY domain is characterised by the distinctive D*I*PSY motif at the very C terminus of yeast cell-wall glycoproteins. It appears not to be conserved in any other species, however. In fungi, cell adhesion is required for flocculation, mating and virulence, and is mediated by covalently bound cell wall proteins termed adhesins. Map4, an adhesin required for mating in Schizosaccharomyces pombe, is N-glycosylated and O-glycosylated, and is an endogenous substrate for the mannosyl transferase Oma4p. Map4 has a modular structure with an N-terminal signal peptide, a serine and threonine (S/T)-rich domain that includes nine repeats of 36 amino acids (rich in serine and threonine residues, but lacking glutamines), and a C-terminal DIPSY domain with no glycosyl-phosphatidyl inositol (GPI)-anchor signal. The N-terminal S/T-rich regions, are required for cell wall attachment, but the C-terminal DIPSY domain is required for agglutination and mating in liquid and solid media [].
Probab=21.97 E-value=5.7e+02 Score=22.75 Aligned_cols=70 Identities=23% Similarity=0.422 Sum_probs=54.3
Q ss_pred CeEEecCCCceEEEEecCCCeEEEE--eccCcEEEEEecccceeeEEEcCCEEEEEEecCCCeeEEEEEEeecCceeeee
Q 020740 196 GFVEFDDVNGKVLTYSAQDSIYKVF--DLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSF 273 (322)
Q Consensus 196 gFVEFDdvNgkilty~aq~~~YrVf--dlknYs~LYsIsde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f 273 (322)
+-+-+|-+=.||+|++.+.-.|+|. |...++ |.|- |=.+|..-+.+-.....-|+.+..+.+|+.-.+.
T Consensus 29 nvFyYDsti~RI~TCc~vrP~Y~v~~~D~~~~s--f~I~-------kn~dG~~~Ft~~e~~~~ep~~l~~l~dgri~~ts 99 (123)
T PF11763_consen 29 NVFYYDSTIKRIVTCCCVRPIYRVYHDDPNKSS--FNII-------KNNDGTYQFTFVESSFSEPLDLHTLSDGRIWFTS 99 (123)
T ss_pred eeEEecCCcceEEEecccccEEEEeecCCCcce--EEEE-------ecCCCcEEEEEcccCCCCcEEEEEecCCcEEEEc
Confidence 4567899999999999999999997 443343 2332 3358997778888888899999999999987765
Q ss_pred e
Q 020740 274 N 274 (322)
Q Consensus 274 ~ 274 (322)
.
T Consensus 100 ~ 100 (123)
T PF11763_consen 100 N 100 (123)
T ss_pred c
Confidence 4
No 121
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=21.39 E-value=3.2e+02 Score=31.02 Aligned_cols=49 Identities=31% Similarity=0.448 Sum_probs=37.7
Q ss_pred EecCCCeEEEEeccC---cEEEEEecccceeeEEEcCC-EEEEEEecCCCeeEE
Q 020740 210 YSAQDSIYKVFDLKN---YTMLYSISDKNVQEIKISPG-IMLLIFTKASGHVPL 259 (322)
Q Consensus 210 y~aq~~~YrVfdlkn---Ys~LYsIsde~VqEIkIS~G-imll~~q~~~~~iPl 259 (322)
++|-++-.-||||+| |++-++-. .|+.-|-+||. .+|+.-....-.+-+
T Consensus 30 iSPvGNrvsv~dLknN~S~Tl~~e~~-~NI~~ialSp~g~lllavdE~g~~~lv 82 (893)
T KOG0291|consen 30 ISPVGNRVSVFDLKNNKSYTLPLETR-YNITRIALSPDGTLLLAVDERGRALLV 82 (893)
T ss_pred EeccCCEEEEEEccCCcceeEEeecC-CceEEEEeCCCceEEEEEcCCCcEEEE
Confidence 468899999999999 99999987 99999999964 555555555444433
No 122
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=21.15 E-value=8.7e+02 Score=27.75 Aligned_cols=78 Identities=12% Similarity=0.174 Sum_probs=53.5
Q ss_pred cccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc---------------cceeeEEEc-CCEEEEEEecC
Q 020740 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---------------KNVQEIKIS-PGIMLLIFTKA 253 (322)
Q Consensus 190 ~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsd---------------e~VqEIkIS-~Gimll~~q~~ 253 (322)
..+.+|--+-||. +|.+...+..++..++||..+-...-.... .+-..|.++ +|.+ ++....
T Consensus 801 ~~l~~P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~l-yVaDt~ 878 (1057)
T PLN02919 801 VLLQHPLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRL-FVADTN 878 (1057)
T ss_pred hhccCCceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCE-EEEECC
Confidence 3578899999984 678999899999999999987554321110 134567776 4554 455544
Q ss_pred CCeeEEEEEEeecCceee
Q 020740 254 SGHVPLKILSIEDGTVLK 271 (322)
Q Consensus 254 ~~~iPlkIlsIedG~~l~ 271 (322)
++ -+.++++.+|+...
T Consensus 879 Nn--~Irvid~~~~~~~~ 894 (1057)
T PLN02919 879 NS--LIRYLDLNKGEAAE 894 (1057)
T ss_pred CC--EEEEEECCCCccce
Confidence 44 36789999998643
No 123
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=21.13 E-value=1.8e+02 Score=28.89 Aligned_cols=61 Identities=25% Similarity=0.400 Sum_probs=42.3
Q ss_pred EecCCCceeeeeeeehhhhHhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccc
Q 020740 157 YASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN 235 (322)
Q Consensus 157 y~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~ 235 (322)
.+.|+|++..++.. +- . ...|= =-.|.| -..+.+|+|.-..|..+|||+-+ +.||.|+...
T Consensus 24 sa~Ddf~si~~kcq----Vp-k---D~~PQ--WRkl~W-------SpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~ 84 (282)
T PF15492_consen 24 SAKDDFSSIIGKCQ----VP-K---DPNPQ--WRKLAW-------SPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAM 84 (282)
T ss_pred eccCCchheeEEEe----cC-C---CCCch--heEEEE-------CCCCcEEEEEcCCCeEEEEeccc-ceeEEcCccc
Confidence 46799998855543 10 0 11221 123444 25689999999999999999999 8999999644
No 124
>cd08984 GH43_5 Glycosyl hydrolase family 43. This glycosyl hydrolase family 43 (GH43) includes enzymes with beta-1,4-xylosidase (xylan 1,4-beta-xylosidase; EC 3.2.1.37), beta-1,3-xylosidase (EC 3.2.1.-), alpha-L-arabinofuranosidase (EC 3.2.1.55), arabinanase (EC 3.2.1.99), xylanase (EC 3.2.1.8), endo-alpha-L-arabinanase and galactan 1,3-beta-galactosidase (EC 3.2.1.145) activities. These are inverting enzymes (i.e. they invert the stereochemistry of the anomeric carbon atom of the substrate) that have an aspartate as the catalytic general base, a glutamate as the catalytic general acid and another aspartate that is responsible for pKa modulation and orienting the catalytic acid. Many of the enzymes in this family display both alpha-L-arabinofuranosidase and beta-D-xylosidase activity using aryl-glycosides as substrates. A common structural feature of GH43 enzymes is a 5-bladed beta-propeller domain that contains the catalytic acid and catalytic base. A long V-shaped groove, partially e
Probab=20.69 E-value=1.8e+02 Score=27.11 Aligned_cols=48 Identities=19% Similarity=0.300 Sum_probs=31.4
Q ss_pred ccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEE--------EEEecccceeeEEEcCCEEE
Q 020740 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM--------LYSISDKNVQEIKISPGIML 247 (322)
Q Consensus 191 ~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~--------LYsIsde~VqEIkIS~Giml 247 (322)
.-.||+||+++| ...+.|+.+.. .++.. -+..+.-.|.|.+..||.++
T Consensus 236 ~~~H~~i~~~~~--~~y~~Yh~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~dg~~~ 291 (294)
T cd08984 236 KGRHADVVVTGD--RAYIFYFTHPG-------REYEAEDDAADPYRYRRSSIQVAELEVVDGKLV 291 (294)
T ss_pred cccCCcEEEeCC--EEEEEEEecCC-------CcccccccccCchhheeeeEEEEEEEEeCCEEE
Confidence 347899999985 67778887753 22222 13444455777778888774
No 125
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=20.56 E-value=1.6e+02 Score=24.98 Aligned_cols=32 Identities=9% Similarity=0.226 Sum_probs=28.6
Q ss_pred CCEEEEEEecCCCeeEEEEEEeecCceeeeee
Q 020740 243 PGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (322)
Q Consensus 243 ~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~ 274 (322)
-|++.++...+...+.++|+||.++..+-+..
T Consensus 29 ~Gvl~~vkD~~~~sy~lrl~D~~~~~v~weqE 60 (105)
T cd01205 29 TGAVCLVKDNVQKSYFIRLFDIKANRIIWEQE 60 (105)
T ss_pred EEEEEEEEECCCCEEEEEEEEccCCcEEEEEE
Confidence 58999999999999999999999998887654
No 126
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=20.12 E-value=1.3e+02 Score=33.71 Aligned_cols=164 Identities=15% Similarity=0.225 Sum_probs=98.3
Q ss_pred ccEEEEec-CCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceee----cccCCCCeEE
Q 020740 125 NQRICFLN-VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES----ESLKWPGFVE 199 (322)
Q Consensus 125 n~~iC~lN-~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~----~~L~~PgFVE 199 (322)
++..|.+- ..++.-|+||=++... -||-.+.. -+++..=||.++|. =+.||.- .++.|==|-|
T Consensus 58 ~kp~~i~S~~~hespIeSl~f~~~E-~Llaagsa---------sgtiK~wDleeAk~--vrtLtgh~~~~~sv~f~P~~~ 125 (825)
T KOG0267|consen 58 GKPNAITSLTGHESPIESLTFDTSE-RLLAAGSA---------SGTIKVWDLEEAKI--VRTLTGHLLNITSVDFHPYGE 125 (825)
T ss_pred cCCchhheeeccCCcceeeecCcch-hhhccccc---------CCceeeeehhhhhh--hhhhhccccCcceeeeccceE
Confidence 44444443 4567788888777543 34432211 13445557777762 2345542 5666777888
Q ss_pred ecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeE---EEcCCE-EEEEEecCCCeeEEEEEEeecCceeeeeee
Q 020740 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEI---KISPGI-MLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (322)
Q Consensus 200 FDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~VqEI---kIS~Gi-mll~~q~~~~~iPlkIlsIedG~~l~~f~~ 275 (322)
|+ +-=+.|..++.||.+-.-|.|.-.. +.+-+ +++|+= .+.-... .+ -.+|.|.--|+.+++|+.
T Consensus 126 ~~-------a~gStdtd~~iwD~Rk~Gc~~~~~s-~~~vv~~l~lsP~Gr~v~~g~e-d~--tvki~d~~agk~~~ef~~ 194 (825)
T KOG0267|consen 126 FF-------ASGSTDTDLKIWDIRKKGCSHTYKS-HTRVVDVLRLSPDGRWVASGGE-DN--TVKIWDLTAGKLSKEFKS 194 (825)
T ss_pred Ee-------ccccccccceehhhhccCceeeecC-CcceeEEEeecCCCceeeccCC-cc--eeeeeccccccccccccc
Confidence 88 2236789999999996666665543 43333 445433 3222222 12 358899989999999983
Q ss_pred ccccCCcchhhhhccceeEEEe--cCCceeEEEccccccee
Q 020740 276 LLHRNKKVDFIEQFNEKLLVKQ--ENENLQILDVRISLFLP 314 (322)
Q Consensus 276 ~L~~sk~iqFiE~f~EkLLIKQ--E~~~LqI~Dl~~~~~~~ 314 (322)
+.-+++-+|-.+.+.|.-- -+..++.|||...+.+-
T Consensus 195 ---~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~ 232 (825)
T KOG0267|consen 195 ---HEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS 232 (825)
T ss_pred ---ccccccccccCchhhhhccCCCCceeeeeccceeEEee
Confidence 2555666664443333322 56789999999877664
Done!