Query 020740
Match_columns 322
No_of_seqs 39 out of 41
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 07:29:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020740.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020740hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3odt_A Protein DOA1; ubiquitin 98.1 0.00074 2.5E-08 55.5 19.7 216 74-314 84-301 (313)
2 3v7d_B Cell division control p 97.9 0.001 3.4E-08 59.3 18.2 202 94-311 161-383 (464)
3 1sq9_A Antiviral protein SKI8; 97.9 0.0047 1.6E-07 53.0 21.6 213 94-313 61-326 (397)
4 4g56_B MGC81050 protein; prote 97.8 0.0013 4.5E-08 58.3 17.5 219 73-310 117-344 (357)
5 3gre_A Serine/threonine-protei 97.8 0.0055 1.9E-07 54.1 21.1 179 120-313 48-249 (437)
6 2ovr_B FBW7, F-BOX/WD repeat p 97.8 0.0044 1.5E-07 55.3 20.5 189 94-312 158-351 (445)
7 1p22_A F-BOX/WD-repeat protein 97.7 0.0031 1.1E-07 56.4 18.8 191 94-311 172-367 (435)
8 2ynn_A Coatomer subunit beta'; 97.7 0.009 3.1E-07 51.1 20.7 186 105-313 67-263 (304)
9 4gqb_B Methylosome protein 50; 97.7 0.0034 1.2E-07 56.2 17.7 221 73-312 105-334 (344)
10 2ovr_B FBW7, F-BOX/WD repeat p 97.7 0.0031 1.1E-07 56.3 17.2 193 95-314 199-396 (445)
11 3k26_A Polycomb protein EED; W 97.6 0.0017 5.9E-08 54.4 13.8 194 96-313 70-322 (366)
12 3odt_A Protein DOA1; ubiquitin 97.6 0.01 3.5E-07 48.7 18.2 211 96-313 19-259 (313)
13 3gre_A Serine/threonine-protei 97.6 0.001 3.6E-08 58.7 13.0 206 95-312 63-295 (437)
14 3k26_A Polycomb protein EED; W 97.5 0.0024 8.1E-08 53.5 13.9 198 95-311 18-262 (366)
15 3zwl_B Eukaryotic translation 97.5 0.018 6.2E-07 48.0 19.1 207 94-313 73-308 (369)
16 1sq9_A Antiviral protein SKI8; 97.5 0.0029 9.8E-08 54.4 14.5 203 96-312 17-270 (397)
17 4aez_A CDC20, WD repeat-contai 97.5 0.025 8.5E-07 50.1 20.8 203 95-316 176-387 (401)
18 4ery_A WD repeat-containing pr 97.5 0.024 8.3E-07 47.7 19.6 195 95-313 65-272 (312)
19 4ery_A WD repeat-containing pr 97.5 0.039 1.3E-06 46.4 21.3 192 97-312 25-226 (312)
20 2pm9_A Protein WEB1, protein t 97.5 0.0015 5.2E-08 56.3 12.0 202 94-312 112-340 (416)
21 1gxr_A ESG1, transducin-like e 97.4 0.012 3.9E-07 48.7 16.8 186 107-314 65-260 (337)
22 4gqb_B Methylosome protein 50; 97.4 0.0086 2.9E-07 53.5 17.1 198 94-314 81-294 (344)
23 1l0q_A Surface layer protein; 97.4 0.015 5E-07 50.2 17.9 181 112-312 51-236 (391)
24 3vl1_A 26S proteasome regulato 97.4 0.014 4.7E-07 50.8 17.7 183 105-311 109-324 (420)
25 1l0q_A Surface layer protein; 97.4 0.016 5.6E-07 49.9 17.7 186 108-313 5-193 (391)
26 1gxr_A ESG1, transducin-like e 97.4 0.021 7.2E-07 47.2 17.6 191 95-308 141-336 (337)
27 4g56_B MGC81050 protein; prote 97.4 0.0016 5.6E-08 57.7 11.7 202 90-314 89-306 (357)
28 3bws_A Protein LP49; two-domai 97.4 0.018 6.1E-07 50.4 17.7 200 97-309 213-432 (433)
29 3i2n_A WD repeat-containing pr 97.4 0.01 3.5E-07 49.7 15.5 202 94-311 64-293 (357)
30 2pm9_A Protein WEB1, protein t 97.3 0.013 4.4E-07 50.5 16.6 206 94-312 66-297 (416)
31 2aq5_A Coronin-1A; WD40 repeat 97.3 0.011 3.8E-07 52.0 16.2 186 112-312 54-257 (402)
32 4aez_A CDC20, WD repeat-contai 97.3 0.049 1.7E-06 48.1 20.5 184 106-313 104-297 (401)
33 1pgu_A Actin interacting prote 97.3 0.038 1.3E-06 50.1 19.8 198 95-313 63-287 (615)
34 1k8k_C P40, ARP2/3 complex 41 97.3 0.018 6.1E-07 48.7 16.4 195 95-309 52-274 (372)
35 1got_B GT-beta; complex (GTP-b 97.2 0.067 2.3E-06 46.5 20.0 196 96-312 56-260 (340)
36 1got_B GT-beta; complex (GTP-b 97.2 0.044 1.5E-06 47.6 18.8 175 107-306 156-340 (340)
37 1pgu_A Actin interacting prote 97.2 0.012 4.3E-07 53.2 15.8 160 95-274 160-336 (615)
38 1p22_A F-BOX/WD-repeat protein 97.2 0.025 8.5E-07 50.6 17.6 189 98-313 136-329 (435)
39 3mkq_A Coatomer beta'-subunit; 97.2 0.023 7.9E-07 54.1 18.1 194 96-312 56-262 (814)
40 3ei3_B DNA damage-binding prot 97.2 0.012 4.2E-07 50.9 14.6 191 106-309 176-382 (383)
41 4a11_B DNA excision repair pro 97.2 0.013 4.5E-07 49.8 14.5 201 95-312 43-279 (408)
42 1vyh_C Platelet-activating fac 97.2 0.019 6.6E-07 51.7 16.4 197 94-312 107-330 (410)
43 1vyh_C Platelet-activating fac 97.2 0.066 2.3E-06 48.2 19.8 192 96-313 151-373 (410)
44 2aq5_A Coronin-1A; WD40 repeat 97.1 0.019 6.6E-07 50.4 15.7 201 95-316 131-349 (402)
45 3jrp_A Fusion protein of prote 97.1 0.091 3.1E-06 44.1 20.4 199 94-309 54-287 (379)
46 1r5m_A SIR4-interacting protei 97.1 0.031 1.1E-06 47.6 16.4 180 105-308 217-424 (425)
47 3zwl_B Eukaryotic translation 97.1 0.087 3E-06 43.9 18.7 199 94-313 31-253 (369)
48 1r5m_A SIR4-interacting protei 97.1 0.037 1.3E-06 47.1 16.7 193 96-313 46-282 (425)
49 3ei3_B DNA damage-binding prot 97.1 0.13 4.4E-06 44.5 20.9 185 106-312 87-285 (383)
50 2vdu_B TRNA (guanine-N(7)-)-me 97.1 0.15 5.2E-06 45.9 21.1 197 96-307 103-337 (450)
51 3lrv_A PRE-mRNA-splicing facto 97.0 0.015 5.1E-07 50.3 13.9 181 110-309 99-292 (343)
52 2ynn_A Coatomer subunit beta'; 97.0 0.097 3.3E-06 44.7 18.2 200 95-310 97-303 (304)
53 3vl1_A 26S proteasome regulato 97.0 0.0097 3.3E-07 51.7 12.0 184 105-312 68-281 (420)
54 4aow_A Guanine nucleotide-bind 96.9 0.061 2.1E-06 44.7 16.3 186 105-309 140-337 (340)
55 3ow8_A WD repeat-containing pr 96.9 0.083 2.8E-06 46.0 17.8 178 106-307 135-319 (321)
56 3ow8_A WD repeat-containing pr 96.9 0.024 8.4E-07 49.4 14.4 183 107-313 94-283 (321)
57 2pbi_B Guanine nucleotide-bind 96.9 0.14 4.7E-06 45.1 19.3 187 106-311 77-273 (354)
58 3f3f_A Nucleoporin SEH1; struc 96.9 0.016 5.4E-07 47.3 12.2 108 198-312 17-146 (351)
59 3v7d_B Cell division control p 96.9 0.06 2.1E-06 47.8 16.6 182 95-303 270-456 (464)
60 4ggc_A P55CDC, cell division c 96.8 0.11 3.8E-06 42.8 16.7 187 105-309 119-315 (318)
61 3mkq_A Coatomer beta'-subunit; 96.8 0.055 1.9E-06 51.5 16.9 184 105-312 25-220 (814)
62 1erj_A Transcriptional repress 96.8 0.12 4.2E-06 45.9 18.1 178 112-311 82-289 (393)
63 3vgz_A Uncharacterized protein 96.8 0.19 6.3E-06 42.2 20.6 187 108-313 104-307 (353)
64 1erj_A Transcriptional repress 96.8 0.18 6.1E-06 44.8 18.7 196 98-313 126-345 (393)
65 3bws_A Protein LP49; two-domai 96.7 0.13 4.6E-06 44.9 17.3 196 97-313 171-394 (433)
66 3jrp_A Fusion protein of prote 96.6 0.2 6.9E-06 42.0 17.2 198 97-311 13-242 (379)
67 3i2n_A WD repeat-containing pr 96.6 0.24 8.3E-06 41.3 17.8 186 106-312 130-356 (357)
68 4a11_B DNA excision repair pro 96.6 0.083 2.8E-06 44.9 14.5 179 113-311 21-220 (408)
69 3iz6_a 40S ribosomal protein R 96.5 0.33 1.1E-05 42.9 18.7 188 107-310 172-376 (380)
70 4e54_B DNA damage-binding prot 96.5 0.055 1.9E-06 48.7 13.7 198 97-312 121-330 (435)
71 1nir_A Nitrite reductase; hemo 96.4 0.15 5.2E-06 49.1 17.4 189 106-314 150-360 (543)
72 1k8k_C P40, ARP2/3 complex 41 96.4 0.35 1.2E-05 40.7 17.8 184 107-313 22-237 (372)
73 1yfq_A Cell cycle arrest prote 96.4 0.33 1.1E-05 40.5 17.0 197 94-313 55-286 (342)
74 3mmy_A MRNA export factor; mRN 96.4 0.35 1.2E-05 40.2 19.0 194 95-311 39-249 (368)
75 1pby_B Quinohemoprotein amine 96.4 0.17 5.8E-06 41.9 14.9 152 106-274 2-171 (337)
76 2hes_X YDR267CP; beta-propelle 96.3 0.45 1.6E-05 41.2 19.8 195 97-310 16-231 (330)
77 1yfq_A Cell cycle arrest prote 96.3 0.14 4.9E-06 42.7 14.3 179 106-310 24-226 (342)
78 3dm0_A Maltose-binding peripla 96.1 0.19 6.7E-06 48.2 16.1 197 96-314 431-637 (694)
79 3mmy_A MRNA export factor; mRN 96.1 0.44 1.5E-05 39.6 16.3 107 197-311 91-201 (368)
80 3dm0_A Maltose-binding peripla 96.0 0.32 1.1E-05 46.7 17.1 195 95-309 472-693 (694)
81 2vdu_B TRNA (guanine-N(7)-)-me 96.0 0.3 1E-05 44.0 15.7 158 138-313 104-275 (450)
82 4gga_A P55CDC, cell division c 95.9 0.65 2.2E-05 41.3 17.4 108 198-310 282-396 (420)
83 3iz6_a 40S ribosomal protein R 95.8 0.55 1.9E-05 41.5 16.5 199 95-312 66-283 (380)
84 3u4y_A Uncharacterized protein 95.7 0.75 2.6E-05 38.5 18.1 183 116-312 109-307 (331)
85 1ri6_A Putative isomerase YBHE 95.7 0.73 2.5E-05 38.1 18.2 185 112-309 12-209 (343)
86 3sfz_A APAF-1, apoptotic pepti 95.7 0.59 2E-05 47.4 18.1 121 95-232 657-782 (1249)
87 2xyi_A Probable histone-bindin 95.7 0.16 5.3E-06 45.8 12.6 200 94-309 127-353 (430)
88 3dwl_C Actin-related protein 2 95.6 0.16 5.5E-06 43.4 12.0 184 106-312 24-239 (377)
89 2pbi_B Guanine nucleotide-bind 95.6 0.5 1.7E-05 41.6 15.4 175 107-306 168-354 (354)
90 4e54_B DNA damage-binding prot 95.6 0.097 3.3E-06 47.1 10.9 183 111-311 227-432 (435)
91 3vu4_A KMHSV2; beta-propeller 95.6 0.72 2.5E-05 40.6 16.2 106 195-311 61-170 (355)
92 3jro_A Fusion protein of prote 95.4 0.9 3.1E-05 44.8 17.9 196 94-309 52-285 (753)
93 3frx_A Guanine nucleotide-bind 95.3 0.21 7E-06 43.1 11.6 107 198-310 202-318 (319)
94 2oaj_A Protein SNI1; WD40 repe 95.3 0.93 3.2E-05 46.4 18.1 190 97-313 19-246 (902)
95 3jro_A Fusion protein of prote 95.2 0.72 2.5E-05 45.5 16.6 187 106-311 22-240 (753)
96 1nr0_A Actin interacting prote 95.2 2 7E-05 40.8 18.9 184 108-313 163-359 (611)
97 1nr0_A Actin interacting prote 95.1 1.5 5.1E-05 41.7 17.7 191 106-312 72-273 (611)
98 3vgz_A Uncharacterized protein 95.0 1.3 4.5E-05 37.0 20.1 118 193-313 89-219 (353)
99 2oaj_A Protein SNI1; WD40 repe 95.0 0.22 7.4E-06 51.0 12.6 112 198-315 23-135 (902)
100 3sfz_A APAF-1, apoptotic pepti 95.0 1.9 6.6E-05 43.7 19.2 159 95-274 615-782 (1249)
101 3dwl_C Actin-related protein 2 95.0 0.054 1.9E-06 46.4 7.0 110 198-311 17-133 (377)
102 4h5i_A Guanine nucleotide-exch 95.0 1.6 5.3E-05 38.8 16.6 171 114-308 156-342 (365)
103 1jmx_B Amine dehydrogenase; ox 94.9 1.4 4.8E-05 36.7 16.2 186 112-313 62-329 (349)
104 1jmx_B Amine dehydrogenase; ox 94.9 0.73 2.5E-05 38.4 13.3 104 204-312 10-137 (349)
105 3dw8_B Serine/threonine-protei 94.7 0.25 8.6E-06 43.0 10.4 198 96-314 94-378 (447)
106 3vu4_A KMHSV2; beta-propeller 94.7 0.53 1.8E-05 41.4 12.6 104 197-310 24-129 (355)
107 4aow_A Guanine nucleotide-bind 94.6 1.6 5.5E-05 36.1 20.7 195 95-313 86-290 (340)
108 3frx_A Guanine nucleotide-bind 94.6 1.9 6.6E-05 37.0 18.9 191 97-312 67-270 (319)
109 3lrv_A PRE-mRNA-splicing facto 94.6 0.79 2.7E-05 39.5 13.3 123 97-230 172-298 (343)
110 2xyi_A Probable histone-bindin 94.6 0.7 2.4E-05 41.5 13.4 188 107-312 196-413 (430)
111 2oit_A Nucleoporin 214KDA; NH2 94.5 2 6.9E-05 39.8 16.7 131 137-274 93-230 (434)
112 3hfq_A Uncharacterized protein 94.1 2.4 8.2E-05 36.1 18.1 115 191-309 84-218 (347)
113 3u4y_A Uncharacterized protein 94.1 2.2 7.6E-05 35.6 19.3 188 108-312 13-210 (331)
114 4ggc_A P55CDC, cell division c 93.9 0.61 2.1E-05 38.3 10.7 147 106-267 163-316 (318)
115 1pby_B Quinohemoprotein amine 93.9 2.3 7.8E-05 35.0 16.4 54 258-313 261-314 (337)
116 3dw8_B Serine/threonine-protei 93.8 3 0.0001 36.2 17.6 106 197-309 182-315 (447)
117 3fvz_A Peptidyl-glycine alpha- 93.8 0.81 2.8E-05 39.8 11.9 118 190-309 193-322 (329)
118 2xzm_R RACK1; ribosome, transl 93.7 3.1 0.00011 35.9 15.5 204 96-310 77-341 (343)
119 2xzm_R RACK1; ribosome, transl 93.2 1.1 3.6E-05 38.8 11.5 102 203-310 37-150 (343)
120 3f3f_A Nucleoporin SEH1; struc 93.2 2.9 9.8E-05 33.9 22.3 160 94-267 56-250 (351)
121 3fm0_A Protein CIAO1; WDR39,SG 93.1 4 0.00014 35.4 19.2 183 106-309 29-225 (345)
122 2pm7_B Protein transport prote 93.1 1.3 4.4E-05 37.6 11.7 107 198-311 15-134 (297)
123 2w18_A PALB2, fancn, partner a 92.7 1 3.4E-05 43.3 11.6 111 204-314 192-319 (356)
124 2pm7_B Protein transport prote 92.6 2.2 7.5E-05 36.1 12.5 159 134-311 7-191 (297)
125 3bg1_A Protein SEC13 homolog; 92.6 1.5 5.2E-05 37.6 11.6 106 198-310 19-137 (316)
126 1nir_A Nitrite reductase; hemo 92.4 1.2 4.2E-05 42.7 11.9 111 193-312 139-260 (543)
127 4gq1_A NUP37; propeller, trans 91.8 1.9 6.4E-05 38.5 11.6 109 198-312 94-221 (393)
128 4gga_A P55CDC, cell division c 91.5 1.4 4.7E-05 39.3 10.4 152 107-273 244-402 (420)
129 4gq1_A NUP37; propeller, trans 91.5 1.8 6.1E-05 38.6 11.1 107 203-312 154-289 (393)
130 1ri6_A Putative isomerase YBHE 91.2 5.5 0.00019 32.8 15.4 117 193-313 38-165 (343)
131 3fm0_A Protein CIAO1; WDR39,SG 90.1 5.8 0.0002 34.4 12.8 111 198-312 67-184 (345)
132 2kr7_A FKBP-type peptidyl-prol 89.8 0.38 1.3E-05 40.2 4.8 61 224-285 77-137 (151)
133 3dsm_A Uncharacterized protein 89.5 10 0.00035 33.1 18.3 195 100-313 48-257 (328)
134 2oit_A Nucleoporin 214KDA; NH2 88.9 1.8 6.2E-05 40.1 9.2 103 198-308 98-222 (434)
135 4h5i_A Guanine nucleotide-exch 88.7 12 0.00041 33.0 16.6 158 96-266 177-343 (365)
136 3bg1_A Protein SEC13 homolog; 88.7 11 0.00036 32.3 14.5 161 132-310 9-199 (316)
137 2w18_A PALB2, fancn, partner a 87.6 5.2 0.00018 38.4 11.6 114 106-232 194-322 (356)
138 4dt4_A FKBP-type 16 kDa peptid 87.1 0.57 2E-05 40.5 4.3 61 224-285 95-156 (169)
139 2j04_A TAU60, YPL007P, hypothe 85.9 12 0.00042 38.1 13.9 188 97-308 87-296 (588)
140 1xfd_A DIP, dipeptidyl aminope 85.7 3.8 0.00013 38.7 9.4 132 167-313 2-147 (723)
141 2hes_X YDR267CP; beta-propelle 85.4 16 0.00054 31.4 12.5 106 198-310 64-185 (330)
142 3fvz_A Peptidyl-glycine alpha- 84.8 18 0.00063 31.2 17.2 146 114-274 68-235 (329)
143 2j04_B YDR362CP, TAU91; beta p 84.8 0.97 3.3E-05 43.7 5.1 179 107-310 227-429 (524)
144 3cgm_A SLYD, peptidyl-prolyl C 84.2 0.96 3.3E-05 38.3 4.3 61 224-285 67-128 (158)
145 2ojh_A Uncharacterized protein 83.1 16 0.00053 29.0 14.8 189 113-315 60-264 (297)
146 2ymu_A WD-40 repeat protein; u 82.7 28 0.00094 31.5 20.8 186 95-309 344-539 (577)
147 3dsm_A Uncharacterized protein 80.7 15 0.00051 32.0 10.6 119 115-254 203-325 (328)
148 2j04_A TAU60, YPL007P, hypothe 77.2 42 0.0014 34.3 14.0 180 115-316 64-261 (588)
149 2kfw_A FKBP-type peptidyl-prol 76.9 1 3.5E-05 39.7 2.0 60 224-285 72-132 (196)
150 2hqs_A Protein TOLB; TOLB, PAL 76.5 34 0.0012 30.9 12.0 114 197-313 183-304 (415)
151 2k8i_A SLYD, peptidyl-prolyl C 75.9 1.7 5.7E-05 37.4 3.0 60 224-285 72-132 (171)
152 2j04_B YDR362CP, TAU91; beta p 75.8 16 0.00055 35.2 10.2 136 96-244 267-408 (524)
153 3hrp_A Uncharacterized protein 75.5 49 0.0017 30.3 13.2 124 187-313 125-253 (409)
154 3no2_A Uncharacterized protein 74.7 31 0.001 29.8 10.8 151 106-274 89-260 (276)
155 3hfq_A Uncharacterized protein 73.5 41 0.0014 28.4 16.6 175 107-289 154-343 (347)
156 1q7f_A NHL, brain tumor CG1071 73.4 37 0.0013 27.9 20.1 176 114-309 99-280 (286)
157 2ymu_A WD-40 repeat protein; u 71.6 58 0.002 29.4 18.9 189 95-311 57-254 (577)
158 2lcj_A PAB POLC intein; hydrol 70.8 19 0.00064 30.5 8.3 95 169-272 18-119 (185)
159 3scy_A Hypothetical bacterial 70.3 50 0.0017 28.1 13.4 121 193-316 211-346 (361)
160 1qks_A Cytochrome CD1 nitrite 68.8 91 0.0031 30.6 17.7 183 106-314 168-378 (567)
161 2ecf_A Dipeptidyl peptidase IV 68.1 42 0.0014 31.9 10.9 181 116-313 65-325 (741)
162 3q7m_A Lipoprotein YFGL, BAMB; 68.1 59 0.002 28.1 15.8 94 214-313 248-341 (376)
163 1kb0_A Quinohemoprotein alcoho 67.1 48 0.0016 32.9 11.6 56 215-274 457-515 (677)
164 2oiz_A Aromatic amine dehydrog 66.8 41 0.0014 29.9 10.0 73 197-273 258-343 (361)
165 1suu_A DNA gyrase subunit A; t 65.9 41 0.0014 30.6 10.0 117 100-226 3-135 (312)
166 2z3z_A Dipeptidyl aminopeptida 61.9 38 0.0013 32.0 9.3 114 178-309 11-150 (706)
167 2hz6_A Endoplasmic reticulum t 60.5 6 0.00021 35.6 3.4 182 104-312 8-195 (369)
168 3q7m_A Lipoprotein YFGL, BAMB; 59.0 88 0.003 27.0 15.1 177 103-306 186-375 (376)
169 1ix5_A FKBP; ppiase, isomerase 57.6 1.7 5.9E-05 36.2 -0.6 56 224-285 85-142 (151)
170 1jof_A Carboxy-CIS,CIS-muconat 55.6 1E+02 0.0035 26.7 12.7 187 113-314 117-346 (365)
171 3pr9_A FKBP-type peptidyl-prol 53.2 4.7 0.00016 34.2 1.4 57 223-285 83-141 (157)
172 1k32_A Tricorn protease; prote 52.2 2.1E+02 0.0071 29.2 13.7 114 195-311 381-504 (1045)
173 1npe_A Nidogen, entactin; glyc 49.7 1.1E+02 0.0037 25.2 10.2 82 190-274 164-246 (267)
174 2hqs_A Protein TOLB; TOLB, PAL 48.0 1.6E+02 0.0053 26.5 16.1 179 116-313 204-391 (415)
175 1qks_A Cytochrome CD1 nitrite 47.7 1.8E+02 0.006 28.5 11.7 106 200-313 163-279 (567)
176 1jof_A Carboxy-CIS,CIS-muconat 47.3 1.4E+02 0.0048 25.8 14.2 122 192-313 144-296 (365)
177 1k32_A Tricorn protease; prote 47.2 1.5E+02 0.005 30.3 11.3 109 197-312 342-464 (1045)
178 3mbr_X Glutamine cyclotransfer 46.3 1.6E+02 0.0056 26.3 10.8 107 203-314 73-184 (243)
179 3o4h_A Acylamino-acid-releasin 44.8 1.2E+02 0.0042 28.0 9.6 105 203-313 31-145 (582)
180 2ecf_A Dipeptidyl peptidase IV 44.6 1.6E+02 0.0056 27.8 10.6 110 194-313 38-185 (741)
181 3scy_A Hypothetical bacterial 44.3 1.5E+02 0.005 25.2 13.7 78 194-271 260-344 (361)
182 2gop_A Trilobed protease; beta 44.2 1.1E+02 0.0037 25.6 8.4 66 204-272 23-100 (347)
183 2z3z_A Dipeptidyl aminopeptida 43.3 2.2E+02 0.0074 26.9 17.1 187 115-311 235-437 (706)
184 3no2_A Uncharacterized protein 43.2 1.6E+02 0.0054 25.3 15.3 147 112-274 53-203 (276)
185 1q7f_A NHL, brain tumor CG1071 41.1 1.5E+02 0.005 24.2 11.2 113 190-309 27-151 (286)
186 2ojh_A Uncharacterized protein 40.5 1.3E+02 0.0045 23.5 14.5 174 115-308 22-203 (297)
187 3pe7_A Oligogalacturonate lyas 38.1 1.1E+02 0.0036 26.0 7.5 65 203-271 45-116 (388)
188 3prb_A FKBP-type peptidyl-prol 38.0 12 0.00043 33.7 1.7 76 223-304 83-181 (231)
189 3nok_A Glutaminyl cyclase; bet 37.1 2.5E+02 0.0085 25.8 10.8 107 203-314 104-215 (268)
190 1z68_A Fibroblast activation p 37.0 1.5E+02 0.0052 28.0 9.1 127 170-312 4-142 (719)
191 1xfd_A DIP, dipeptidyl aminope 35.5 1.4E+02 0.0049 28.0 8.6 58 216-273 229-296 (723)
192 1at0_A 17-hedgehog; developmen 33.6 1.3E+02 0.0043 24.6 7.0 50 205-254 25-81 (145)
193 2iwa_A Glutamine cyclotransfer 32.6 2.7E+02 0.0093 24.9 12.7 109 198-313 26-139 (266)
194 1dq3_A Endonuclease; PI-PFUI, 28.2 1E+02 0.0035 29.4 6.4 70 202-271 48-125 (454)
195 4e2u_A PHO RADA intein; HINT-f 26.5 1.6E+02 0.0055 24.4 6.6 46 205-251 52-103 (168)
196 2qe8_A Uncharacterized protein 25.7 3.2E+02 0.011 23.5 8.8 59 192-251 247-309 (343)
197 1xip_A Nucleoporin NUP159; bet 25.6 2.4E+02 0.0083 26.5 8.4 104 198-313 43-159 (388)
198 3c5m_A Oligogalacturonate lyas 25.0 3E+02 0.01 23.0 11.9 77 198-274 287-392 (396)
199 4a5s_A Dipeptidyl peptidase 4 24.6 1.5E+02 0.005 28.9 6.8 89 168-270 3-105 (740)
200 1kb0_A Quinohemoprotein alcoho 23.3 5.5E+02 0.019 25.3 18.8 54 258-313 458-511 (677)
201 2z14_A EF-hand domain-containi 23.2 44 0.0015 27.9 2.4 45 194-241 5-57 (133)
202 2hz6_A Endoplasmic reticulum t 23.2 49 0.0017 29.6 3.0 94 213-312 17-114 (369)
203 3o4h_A Acylamino-acid-releasin 23.0 4.5E+02 0.015 24.2 11.7 60 200-265 253-312 (582)
204 2jmz_A Hypothetical protein MJ 22.5 1.2E+02 0.004 25.5 5.0 69 198-271 60-128 (186)
205 1yiq_A Quinohemoprotein alcoho 22.1 5.8E+02 0.02 25.2 11.1 124 105-274 319-513 (689)
206 3pe7_A Oligogalacturonate lyas 21.7 3.6E+02 0.012 22.7 12.2 109 203-312 90-228 (388)
207 1z68_A Fibroblast activation p 21.4 82 0.0028 29.9 4.2 69 197-271 64-144 (719)
208 1mi8_A DNAB intein; all beta-s 21.0 2.4E+02 0.0081 22.7 6.4 34 217-251 48-81 (158)
209 2iwa_A Glutamine cyclotransfer 20.7 4.5E+02 0.016 23.4 10.5 111 200-314 71-186 (266)
No 1
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=98.11 E-value=0.00074 Score=55.49 Aligned_cols=216 Identities=13% Similarity=0.170 Sum_probs=132.3
Q ss_pred eeeeccCCCCcccccccccccccceeEEeeccchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEE
Q 020740 74 EEYDTHDPKGHCSMVLPFLRKRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLIT 153 (322)
Q Consensus 74 ~~fD~~d~k~~~~~~lpfl~kRS~V~EIv~a~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlIt 153 (322)
..+|..+......+ ..+-.....|..+-...+.+++-...|....|| +++.+..+......+....|.....+.+++
T Consensus 84 ~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 84 NGVPLFATSGEDPL-YTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp EEEETTCCTTSCC--CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EEEEeeecCCCCcc-cchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 45666665433222 122234567777777788888888999999999 688888888766666555555545555555
Q ss_pred EEeEecCCCceeeeeeeehhhhHhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec-
Q 020740 154 VSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS- 232 (322)
Q Consensus 154 vSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs- 232 (322)
.| .|. .++... .. .....|....-...--+.|.+. ++ ++....++..++||+++-+.+.++.
T Consensus 161 ~~---~d~--~i~i~d--~~--------~~~~~~~~~~~~~i~~~~~~~~-~~-~~~~~~dg~i~i~d~~~~~~~~~~~~ 223 (313)
T 3odt_A 161 AS---ADK--TIKLWQ--ND--------KVIKTFSGIHNDVVRHLAVVDD-GH-FISCSNDGLIKLVDMHTGDVLRTYEG 223 (313)
T ss_dssp EE---TTS--CEEEEE--TT--------EEEEEECSSCSSCEEEEEEEET-TE-EEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred EE---CCC--CEEEEe--cC--------ceEEEEeccCcccEEEEEEcCC-Ce-EEEccCCCeEEEEECCchhhhhhhhc
Confidence 33 222 233221 00 0011111111122233455543 44 5556789999999999999888775
Q ss_pred -ccceeeEEEcCCEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEEccccc
Q 020740 233 -DKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISL 311 (322)
Q Consensus 233 -de~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~ 311 (322)
...+..+.++|.-.++ .-...+. ++|+++.+|+.+..+...-..-..+.|.. +.+++.==.+..+++||+.+.+
T Consensus 224 ~~~~i~~~~~~~~~~l~-~~~~dg~--v~iwd~~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 224 HESFVYCIKLLPNGDIV-SCGEDRT--VRIWSKENGSLKQVITLPAISIWSVDCMS--NGDIIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp CSSCEEEEEECTTSCEE-EEETTSE--EEEECTTTCCEEEEEECSSSCEEEEEECT--TSCEEEEETTSCEEEEESCGGG
T ss_pred CCceEEEEEEecCCCEE-EEecCCE--EEEEECCCCceeEEEeccCceEEEEEEcc--CCCEEEEeCCCcEEEEeCCCCc
Confidence 5668889998553323 3333343 68999999999888763211122233333 2347777889999999999887
Q ss_pred cee
Q 020740 312 FLP 314 (322)
Q Consensus 312 ~~~ 314 (322)
...
T Consensus 299 ~~~ 301 (313)
T 3odt_A 299 WAS 301 (313)
T ss_dssp CCC
T ss_pred eee
Confidence 654
No 2
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.90 E-value=0.001 Score=59.26 Aligned_cols=202 Identities=11% Similarity=0.113 Sum_probs=127.7
Q ss_pred cccceeEEeecc-chhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecC-CCeEEEEEeEecCCCceeeeeeee
Q 020740 94 KRSKIIEIVAAR-DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKN-NDSLITVSVYASDNFSSLRCRSTR 171 (322)
Q Consensus 94 kRS~V~EIv~a~-diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~-NdSlItvSvy~sd~fS~LkCr~~~ 171 (322)
....|..+.... ..++.-...|....||..+++.+..+.. +..-|.++=++.. +..++. +. ..| ..++.-.++
T Consensus 161 h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~l~-s~-s~d--~~i~vwd~~ 235 (464)
T 3v7d_B 161 HDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEG-HNSTVRCLDIVEYKNIKYIV-TG-SRD--NTLHVWKLP 235 (464)
T ss_dssp CSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEEESSSCEEEE-EE-ETT--SCEEEEECC
T ss_pred CCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECC-CCCccEEEEEecCCCCCEEE-EE-cCC--CcEEEeeCC
Confidence 455677776664 3777778889999999999998888875 4556677766643 333333 21 122 233332221
Q ss_pred hhhhHhCCCC------C----------CCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--c
Q 020740 172 IEYIRRGKPD------A----------GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--D 233 (322)
Q Consensus 172 ~e~i~~gk~~------~----------g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs--d 233 (322)
.++.- . +.+.+....-.+.+.+.-=..++..++.-..++..++||+.+-+++..+. .
T Consensus 236 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~ 310 (464)
T 3v7d_B 236 -----KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT 310 (464)
T ss_dssp -----CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred -----CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence 11110 0 01112222233344333334456777777889999999999999998886 4
Q ss_pred cceeeEEEcCC-EEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEEccccc
Q 020740 234 KNVQEIKISPG-IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISL 311 (322)
Q Consensus 234 e~VqEIkIS~G-imll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~ 311 (322)
..|..+.++|. -.++.--. .+. ++|+++.+|+.+..+.. +...+.-+..-+.+|+.=-.+..+++||+.+.+
T Consensus 311 ~~v~~~~~~~~~~~l~sg~~-dg~--i~vwd~~~~~~~~~~~~---h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~ 383 (464)
T 3v7d_B 311 DRIYSTIYDHERKRCISASM-DTT--IRIWDLENGELMYTLQG---HTALVGLLRLSDKFLVSAAADGSIRGWDANDYS 383 (464)
T ss_dssp SCEEEEEEETTTTEEEEEET-TSC--EEEEETTTTEEEEEECC---CSSCEEEEEECSSEEEEEETTSEEEEEETTTCC
T ss_pred CCEEEEEEcCCCCEEEEEeC-CCc--EEEEECCCCcEEEEEeC---CCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCc
Confidence 56788888753 33333322 222 78999999999988762 345555555556778888899999999998754
No 3
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.90 E-value=0.0047 Score=53.04 Aligned_cols=213 Identities=13% Similarity=0.130 Sum_probs=130.4
Q ss_pred cccceeEEeecc---------chhhhhhccccceeeecccccE-----EEEecCCC----CceEEEEeee----cCCCe-
Q 020740 94 KRSKIIEIVAAR---------DIVFALAQSGVCAAFCRETNQR-----ICFLNVTA----DEVIRSLFYN----KNNDS- 150 (322)
Q Consensus 94 kRS~V~EIv~a~---------diI~aL~~sG~c~af~r~tn~~-----iC~lN~s~----dEvIrSiFyN----k~NdS- 150 (322)
...+|..+.... .++++-...|....||..+++. +..+...+ +.-|.++-++ ...+.
T Consensus 61 h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 140 (397)
T 1sq9_A 61 HKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHR 140 (397)
T ss_dssp CTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEE
T ss_pred CCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceE
Confidence 456677776653 4677777889999999999987 77777665 5778888888 66666
Q ss_pred EEEEEeEecCCCceeeeeeeeh-hhhHhCCCCCCCc--cee------ecccCCCCeEEecCCCceEEEEecCCCeEEEEe
Q 020740 151 LITVSVYASDNFSSLRCRSTRI-EYIRRGKPDAGFA--LFE------SESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFD 221 (322)
Q Consensus 151 lItvSvy~sd~fS~LkCr~~~~-e~i~~gk~~~g~~--LFe------~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfd 221 (322)
|++.| .| ..++.-.+.. +.-..++.-.-.| -+. ...-...--+.|+..+ .++....++..++||
T Consensus 141 l~~~~---~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d 213 (397)
T 1sq9_A 141 LVATD---VK--GTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISE 213 (397)
T ss_dssp EEEEE---TT--SCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEE
T ss_pred EEEEe---CC--CcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEE
Confidence 55533 22 2233322221 0000011101000 111 1112234456777654 667777899999999
Q ss_pred ccCcEEEEEec--------ccceeeEEEcC-CEEEEEEecCCCeeEEEEEEeecCceeeeeeeccc----------cCCc
Q 020740 222 LKNYTMLYSIS--------DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH----------RNKK 282 (322)
Q Consensus 222 lknYs~LYsIs--------de~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~----------~sk~ 282 (322)
+++.+.+..+. ...+..+.++| |-+|+.-......=-++|+++.+++.+..+....+ +...
T Consensus 214 ~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (397)
T 1sq9_A 214 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSW 293 (397)
T ss_dssp TTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSC
T ss_pred CCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCc
Confidence 99999888886 45688899884 55544443332224588999999999887763100 2333
Q ss_pred chhhhh--ccceeEEEecCCceeEEEcccccce
Q 020740 283 VDFIEQ--FNEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 283 iqFiE~--f~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
+.-+.- -+.+|+.=-++..++|||+.+.+.+
T Consensus 294 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 326 (397)
T 1sq9_A 294 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI 326 (397)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTTEEE
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEEcCCCcee
Confidence 333332 2567888889999999999886543
No 4
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.82 E-value=0.0013 Score=58.33 Aligned_cols=219 Identities=8% Similarity=0.072 Sum_probs=129.9
Q ss_pred ceeeeccCCCCcccccccccccccceeEEeecc--chhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCe
Q 020740 73 QEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAAR--DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDS 150 (322)
Q Consensus 73 ~~~fD~~d~k~~~~~~lpfl~kRS~V~EIv~a~--diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdS 150 (322)
..+||+-..+......++...-...|.-+-+.. ..++.-...|....||..+++.+..++. +...|.++-++..++.
T Consensus 117 v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~-h~~~v~~v~~s~~~~~ 195 (357)
T 4g56_B 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA-HSSEVNCVAACPGKDT 195 (357)
T ss_dssp EEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTCSS
T ss_pred EEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-CCCCEEEEEEccCCCc
Confidence 345555444332222222222345566665553 4677777889999999999999998875 4556788888877776
Q ss_pred EEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEE
Q 020740 151 LITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS 230 (322)
Q Consensus 151 lItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYs 230 (322)
++. +...|. . +.+=+++.|+.-....+. ..-..+--+.|.+.++.+++....++..++||+++-+++..
T Consensus 196 ~~~--s~~~dg--~-----v~~wd~~~~~~~~~~~~~--~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~ 264 (357)
T 4g56_B 196 IFL--SCGEDG--R-----ILLWDTRKPKPATRIDFC--ASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT 264 (357)
T ss_dssp CEE--EEETTS--C-----EEECCTTSSSCBCBCCCT--TCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE
T ss_pred eee--eeccCC--c-----eEEEECCCCceeeeeeec--cccccccchhhhhcccceEEEeecccceeEEECCCCcEeEE
Confidence 654 222343 1 222244444431111111 11112335778888888888888899999999999887666
Q ss_pred ec--ccceeeEEEcC-C-EEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhh--hccceeE-EEecCCcee
Q 020740 231 IS--DKNVQEIKISP-G-IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNEKLL-VKQENENLQ 303 (322)
Q Consensus 231 Is--de~VqEIkIS~-G-imll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE--~f~EkLL-IKQE~~~Lq 303 (322)
+. ...|..+.++| | -+|+.--.- . -++|.++++|+++..+. ++..|.=+. +.++++| -==.|..++
T Consensus 265 ~~~~~~~v~~l~~sp~~~~~lasgs~D-~--~i~iwd~~~~~~~~~~~----H~~~V~~vafsP~d~~~l~s~s~Dg~v~ 337 (357)
T 4g56_B 265 SAVHSQNITGLAYSYHSSPFLASISED-C--TVAVLDADFSEVFRDLS----HRDFVTGVAWSPLDHSKFTTVGWDHKVL 337 (357)
T ss_dssp ECCCSSCEEEEEECSSSSCCEEEEETT-S--CEEEECTTSCEEEEECC----CSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred EeccceeEEEEEEcCCCCCEEEEEeCC-C--EEEEEECCCCcEeEECC----CCCCEEEEEEeCCCCCEEEEEcCCCeEE
Confidence 54 56788888884 3 344433222 2 26899999999887543 344443332 1234444 456899999
Q ss_pred EEEcccc
Q 020740 304 ILDVRIS 310 (322)
Q Consensus 304 I~Dl~~~ 310 (322)
+||+.+.
T Consensus 338 iW~~~~~ 344 (357)
T 4g56_B 338 HHHLPSE 344 (357)
T ss_dssp EEECC--
T ss_pred EEECCCC
Confidence 9999664
No 5
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.0055 Score=54.08 Aligned_cols=179 Identities=15% Similarity=0.111 Sum_probs=112.4
Q ss_pred eecccccEEEEecCCCCceEEEEeeec-CCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceeecccCCCCeE
Q 020740 120 FCRETNQRICFLNVTADEVIRSLFYNK-NNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFV 198 (322)
Q Consensus 120 f~r~tn~~iC~lN~s~dEvIrSiFyNk-~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~~~L~~PgFV 198 (322)
++ .+|+.+..+...+...|.+|=++. +..-|++.| .|. ..+.-+++....|+.......+. --...--+
T Consensus 48 w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s---~dg----~v~vwd~~~~~~~~~~~~~~~~~--h~~~v~~~ 117 (437)
T 3gre_A 48 GN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGS---DQG----VIKIWNLKEIIVGEVYSSSLTYD--CSSTVTQI 117 (437)
T ss_dssp GG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEE---TTS----EEEEEEHHHHHTTCCCSCSEEEE--CSSCEEEE
T ss_pred cc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEec---CCc----eEEEeECcccccCcccceeeecc--CCCCEEEE
Confidence 44 578999999888888999999998 666666544 333 34445555554455222111111 11112245
Q ss_pred EecCCCceEEEEecCCCeEEEEecc---CcEEEEEecccceeeEEEcC-----------------CEEEEEEecCCCeeE
Q 020740 199 EFDDVNGKVLTYSAQDSIYKVFDLK---NYTMLYSISDKNVQEIKISP-----------------GIMLLIFTKASGHVP 258 (322)
Q Consensus 199 EFDdvNgkilty~aq~~~YrVfdlk---nYs~LYsIsde~VqEIkIS~-----------------Gimll~~q~~~~~iP 258 (322)
.|.. +++.++....|+..++||+. +-..+-......+..+.+++ |-+++.-.... -
T Consensus 118 ~~~~-~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~ 193 (437)
T 3gre_A 118 TMIP-NFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLS---R 193 (437)
T ss_dssp EECT-TSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTS---E
T ss_pred EEeC-CCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCC---e
Confidence 7775 66666667789999999995 44455555555666776654 44444433322 3
Q ss_pred EEEEEeecCceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEEcccccce
Q 020740 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 259 lkIlsIedG~~l~~f~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
++++++.+++.+..+....| ...|.-+. .-+..|+.=-++..+++||+++.+.+
T Consensus 194 i~iwd~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 249 (437)
T 3gre_A 194 VIIFDIRTLERLQIIENSPR-HGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLI 249 (437)
T ss_dssp EEEEETTTCCEEEEEECCGG-GCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE
T ss_pred EEEEeCCCCeeeEEEccCCC-CCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEE
Confidence 68999999999988874212 33333222 12667888889999999999986543
No 6
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.79 E-value=0.0044 Score=55.35 Aligned_cols=189 Identities=15% Similarity=0.253 Sum_probs=125.2
Q ss_pred cccceeEEeeccchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehh
Q 020740 94 KRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (322)
Q Consensus 94 kRS~V~EIv~a~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e 173 (322)
....|..+-...++++.-...|...+||..+++.+..+.. +...|.++-++. +.+++.| .| ..++.-.+
T Consensus 158 h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~--~~l~s~s---~d--g~i~~wd~--- 226 (445)
T 2ovr_B 158 HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYG-HTSTVRCMHLHE--KRVVSGS---RD--ATLRVWDI--- 226 (445)
T ss_dssp CSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEET--TEEEEEE---TT--SEEEEEES---
T ss_pred CCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEEECC-CCCcEEEEEecC--CEEEEEe---CC--CEEEEEEC---
Confidence 3456666766778888888899999999999999988874 455667787763 4454433 22 22333222
Q ss_pred hhHhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcCCEEEE
Q 020740 174 YIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLL 248 (322)
Q Consensus 174 ~i~~gk~~~g~~LFe~~~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~Gimll 248 (322)
..|+ ++..- -.+.+ -+.| +|+.++....++..++||+++-+.+.++. ...|..+.+.+..+ +
T Consensus 227 --~~~~-----~~~~~--~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~l-~ 293 (445)
T 2ovr_B 227 --ETGQ-----CLHVL--MGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHV-V 293 (445)
T ss_dssp --SSCC-----EEEEE--ECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEE-E
T ss_pred --CCCc-----EEEEE--cCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEECCCEE-E
Confidence 2222 11111 11233 2344 56667777789999999999999998886 35677888844443 4
Q ss_pred EEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEEcccccc
Q 020740 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISLF 312 (322)
Q Consensus 249 ~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~ 312 (322)
.-..... ++++++.+|+.+..+.. | ...+.-+..-+..|+.=-.+..+++||+.+.+.
T Consensus 294 ~~~~d~~---i~i~d~~~~~~~~~~~~--~-~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 351 (445)
T 2ovr_B 294 SGSLDTS---IRVWDVETGNCIHTLTG--H-QSLTSGMELKDNILVSGNADSTVKIWDIKTGQC 351 (445)
T ss_dssp EEETTSC---EEEEETTTCCEEEEECC--C-CSCEEEEEEETTEEEEEETTSCEEEEETTTCCE
T ss_pred EEeCCCe---EEEEECCCCCEEEEEcC--C-cccEEEEEEeCCEEEEEeCCCeEEEEECCCCcE
Confidence 4333222 68999999999987752 2 334444455677888888999999999987654
No 7
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.74 E-value=0.0031 Score=56.45 Aligned_cols=191 Identities=13% Similarity=0.217 Sum_probs=124.3
Q ss_pred cccceeEEeeccchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehh
Q 020740 94 KRSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (322)
Q Consensus 94 kRS~V~EIv~a~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e 173 (322)
....|..+-...+++++-...|...+||..+++.+..+.. +.+.|.++-++. +.+++.| .|. .++.-.+
T Consensus 172 h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~l~~~~--~~l~s~s---~dg--~i~vwd~--- 240 (435)
T 1p22_A 172 HTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIH-HCEAVLHLRFNN--GMMVTCS---KDR--SIAVWDM--- 240 (435)
T ss_dssp CSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEEECC-CCSCEEEEECCT--TEEEEEE---TTS--CEEEEEC---
T ss_pred CCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEEEcC-CCCcEEEEEEcC--CEEEEee---CCC--cEEEEeC---
Confidence 3456777766677888888899999999999999998875 455677787763 4444433 222 2333222
Q ss_pred hhHhCCCCCCCcceeecccCCCCe---EEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcCCEEEE
Q 020740 174 YIRRGKPDAGFALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLL 248 (322)
Q Consensus 174 ~i~~gk~~~g~~LFe~~~L~~PgF---VEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~Gimll 248 (322)
..++. .-.......|.+- +.| +++.++....++..++||+++.+++..+. ...|..+..++..++.
T Consensus 241 --~~~~~----~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~l~~ 311 (435)
T 1p22_A 241 --ASPTD----ITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVS 311 (435)
T ss_dssp --SSSSC----CEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEE
T ss_pred --CCCCC----ceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCCCEEEE
Confidence 22211 0011111223332 344 56667767789999999999999888876 3557777776665533
Q ss_pred EEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEEccccc
Q 020740 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISL 311 (322)
Q Consensus 249 ~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~ 311 (322)
-. ..+ -++|+++.+|+.+..+.. +...+.-+..-+..|+.=-.+..+++||+.+.+
T Consensus 312 g~--~dg--~i~iwd~~~~~~~~~~~~---h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 312 GS--SDN--TIRLWDIECGACLRVLEG---HEELVRCIRFDNKRIVSGAYDGKIKVWDLVAAL 367 (435)
T ss_dssp EE--TTS--CEEEEETTTCCEEEEECC---CSSCEEEEECCSSEEEEEETTSCEEEEEHHHHT
T ss_pred Ee--CCC--eEEEEECCCCCEEEEEeC---CcCcEEEEEecCCEEEEEeCCCcEEEEECCCCC
Confidence 32 222 378999999999988762 233443333357778888899999999998754
No 8
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=97.73 E-value=0.009 Score=51.13 Aligned_cols=186 Identities=15% Similarity=0.190 Sum_probs=118.9
Q ss_pred cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCC
Q 020740 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (322)
Q Consensus 105 ~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~ 184 (322)
...++.-...|....||..+++.+..+.. +...|.+|-++..+..|++.| ++ ..++.- +++.+.
T Consensus 67 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sgs----~D-~~v~lW-----d~~~~~----- 130 (304)
T 2ynn_A 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEA-HPDYIRSIAVHPTKPYVLSGS----DD-LTVKLW-----NWENNW----- 130 (304)
T ss_dssp GTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSSEEEEEE----TT-SCEEEE-----EGGGTT-----
T ss_pred CCEEEEECCCCEEEEEECCCCcEEEEEeC-CCCcEEEEEEcCCCCEEEEEC----CC-CeEEEE-----ECCCCc-----
Confidence 45666677788999999999999888865 455678898888777666543 33 223222 222221
Q ss_pred cceeecccCCCCe---EEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc---cceeeEEEcC---CEEEEEEecCCC
Q 020740 185 ALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KNVQEIKISP---GIMLLIFTKASG 255 (322)
Q Consensus 185 ~LFe~~~L~~PgF---VEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsd---e~VqEIkIS~---Gimll~~q~~~~ 255 (322)
.+ ....-.|.+. +.|+..++..++-...|+..++||+.+-...+.+.. ..+.-+.+++ +-+|+.--. .+
T Consensus 131 ~~-~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~-D~ 208 (304)
T 2ynn_A 131 AL-EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD-DL 208 (304)
T ss_dssp EE-EEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET-TS
T ss_pred ch-hhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC-CC
Confidence 11 1111124443 568877888888788899999999988776666643 3355555543 334333322 22
Q ss_pred eeEEEEEEeecCceeeeeeeccccCCcchhhhhc--cceeEEEecCCceeEEEcccccce
Q 020740 256 HVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 256 ~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f--~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
-++|.++++|+.+..+.- +...+..+.-. +..|+-=-++..++|||+.+.++.
T Consensus 209 --~i~iWd~~~~~~~~~~~~---h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~ 263 (304)
T 2ynn_A 209 --TIKIWDYQTKSCVATLEG---HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE 263 (304)
T ss_dssp --EEEEEETTTTEEEEEEEC---CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEE
T ss_pred --eEEEEeCCCCccceeeCC---CCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCcee
Confidence 378999999999887762 24444433222 234666668999999999887654
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.66 E-value=0.0034 Score=56.18 Aligned_cols=221 Identities=12% Similarity=0.092 Sum_probs=130.3
Q ss_pred ceeeeccCCCCcccccccccccccceeEEeec--cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCe
Q 020740 73 QEEYDTHDPKGHCSMVLPFLRKRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDS 150 (322)
Q Consensus 73 ~~~fD~~d~k~~~~~~lpfl~kRS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdS 150 (322)
.+++|+-..+..........--...|.-+-+. ...++.-...|....||..+++.+..+.. +..-|.++-++..+.+
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~-h~~~V~~~~~~~~~~~ 183 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRA-HAAQVTCVAASPHKDS 183 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECSSCTT
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-cCCceEEEEecCCCCC
Confidence 35566544433222211111224556666554 34667777889999999999999988865 4556777878777666
Q ss_pred EEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEE
Q 020740 151 LITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS 230 (322)
Q Consensus 151 lItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYs 230 (322)
++. | ++++ ..++. =+++.|+.- ..+.....-..+--+.|...++++++.-..|+..++||+++-+++.+
T Consensus 184 ~l~-s--~s~D-~~v~i-----wd~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~ 252 (344)
T 4gqb_B 184 VFL-S--CSED-NRILL-----WDTRCPKPA--SQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS 252 (344)
T ss_dssp EEE-E--EETT-SCEEE-----EETTSSSCE--EECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE
T ss_pred cee-e--eccc-ccccc-----cccccccee--eeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE
Confidence 543 1 2233 22322 234444321 01111111112234678888899988888999999999999998887
Q ss_pred ec--ccceeeEEEcC-C-EEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhh--hccceeEEE-ecCCcee
Q 020740 231 IS--DKNVQEIKISP-G-IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVK-QENENLQ 303 (322)
Q Consensus 231 Is--de~VqEIkIS~-G-imll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE--~f~EkLLIK-QE~~~Lq 303 (322)
+. ...|..+.++| | -+|+.--. ... ++|.++.+|+.+... .++..|.=+. .-+++||.- =+|..++
T Consensus 253 ~~~h~~~v~~v~fsp~g~~~lasgs~-D~~--i~vwd~~~~~~~~~~----~H~~~V~~v~~sp~~~~llas~s~D~~v~ 325 (344)
T 4gqb_B 253 SAVHSQCVTGLVFSPHSVPFLASLSE-DCS--LAVLDSSLSELFRSQ----AHRDFVRDATWSPLNHSLLTTVGWDHQVV 325 (344)
T ss_dssp EECCSSCEEEEEECSSSSCCEEEEET-TSC--EEEECTTCCEEEEEC----CCSSCEEEEEECSSSTTEEEEEETTSCEE
T ss_pred EcCCCCCEEEEEEccCCCeEEEEEeC-CCe--EEEEECCCCcEEEEc----CCCCCEEEEEEeCCCCeEEEEEcCCCeEE
Confidence 76 46788889985 3 34333322 222 688999999876522 2344443232 235677754 5899999
Q ss_pred EEEcccccc
Q 020740 304 ILDVRISLF 312 (322)
Q Consensus 304 I~Dl~~~~~ 312 (322)
+||+....+
T Consensus 326 ~w~v~~~~~ 334 (344)
T 4gqb_B 326 HHVVPTEPL 334 (344)
T ss_dssp EEECCC---
T ss_pred EEECCCCCC
Confidence 999976543
No 10
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.65 E-value=0.0031 Score=56.32 Aligned_cols=193 Identities=13% Similarity=0.200 Sum_probs=125.0
Q ss_pred ccceeEEeeccchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhh
Q 020740 95 RSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (322)
Q Consensus 95 RS~V~EIv~a~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~ 174 (322)
...|..+-...+.+++-...|....||..+++.+..+.... ..|.++-++ .+.+++.| .|. .++.- +
T Consensus 199 ~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~v~~~~~~--~~~l~~~~---~dg--~i~iw-----d 265 (445)
T 2ovr_B 199 TSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHV-AAVRCVQYD--GRRVVSGA---YDF--MVKVW-----D 265 (445)
T ss_dssp SSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCS-SCEEEEEEC--SSCEEEEE---TTS--CEEEE-----E
T ss_pred CCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCc-ccEEEEEEC--CCEEEEEc---CCC--EEEEE-----E
Confidence 45566666667788888889999999999999998887544 456667663 34444422 222 22222 2
Q ss_pred hHhCCCCCCCcceeecccCCCCe---EEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc--cceeeEEEcCCEEEEE
Q 020740 175 IRRGKPDAGFALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIMLLI 249 (322)
Q Consensus 175 i~~gk~~~g~~LFe~~~L~~PgF---VEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsd--e~VqEIkIS~Gimll~ 249 (322)
++.|+. +.+-. .+++- +.| ++..++....++..++||+.+-+++..+.. ..+..+..+++.++.-
T Consensus 266 ~~~~~~-----~~~~~--~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~ 335 (445)
T 2ovr_B 266 PETETC-----LHTLQ--GHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSG 335 (445)
T ss_dssp GGGTEE-----EEEEC--CCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEE
T ss_pred CCCCcE-----eEEec--CCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEeCCEEEEE
Confidence 222221 11110 12222 334 566677777899999999999998888753 4466677777755332
Q ss_pred EecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEEccccccee
Q 020740 250 FTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISLFLP 314 (322)
Q Consensus 250 ~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~~ 314 (322)
. ..+ -++++++.+|+.+..+...-.+...+--+..-+.+|+.=-++..+++||+.+.+.+.
T Consensus 336 ~--~dg--~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 396 (445)
T 2ovr_B 336 N--ADS--TVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 396 (445)
T ss_dssp E--TTS--CEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred e--CCC--eEEEEECCCCcEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceee
Confidence 2 222 368899999999988864222445554444456778888899999999999877553
No 11
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.59 E-value=0.0017 Score=54.36 Aligned_cols=194 Identities=14% Similarity=0.119 Sum_probs=118.3
Q ss_pred cceeEEeeccc------hhhhhhccccceeeecccccEEEEecCCCCceEEEEeeec-CCCeEEEEEeEecCCCceeeee
Q 020740 96 SKIIEIVAARD------IVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNK-NNDSLITVSVYASDNFSSLRCR 168 (322)
Q Consensus 96 S~V~EIv~a~d------iI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk-~NdSlItvSvy~sd~fS~LkCr 168 (322)
..|..+-...+ ++++-...|....||..+++.+..+.. +..-|.++-++. +..-|++.| .|. .++.-
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~l~s~~---~dg--~i~iw 143 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVG-HGNAINELKFHPRDPNLLLSVS---KDH--ALRLW 143 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEES-CCSCEEEEEECSSCTTEEEEEE---TTS--CEEEE
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecC-CCCcEEEEEECCCCCCEEEEEe---CCC--eEEEE
Confidence 44666666555 677778889999999999999998874 556778888887 444444432 222 23222
Q ss_pred eeehhhhHhCCCCCCCcceee----cccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEe-------------
Q 020740 169 STRIEYIRRGKPDAGFALFES----ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI------------- 231 (322)
Q Consensus 169 ~~~~e~i~~gk~~~g~~LFe~----~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsI------------- 231 (322)
+++.|+ ++..- ..-...--+.|+. +|+.++....++..++||+++-+.+..+
T Consensus 144 -----d~~~~~-----~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 212 (366)
T 3k26_A 144 -----NIQTDT-----LVAIFGGVEGHRDEVLSADYDL-LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNR 212 (366)
T ss_dssp -----ETTTTE-----EEEEECSTTSCSSCEEEEEECT-TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSS
T ss_pred -----EeecCe-----EEEEecccccccCceeEEEECC-CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcc
Confidence 222222 12211 1111222356766 5556666667999999999987654333
Q ss_pred -----------------cccceeeEEEcCCEEEEEEecCCCeeEEEEEEeecCce--------------eeeeeeccccC
Q 020740 232 -----------------SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTV--------------LKSFNHLLHRN 280 (322)
Q Consensus 232 -----------------sde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~--------------l~~f~~~L~~s 280 (322)
....|..+..++..+ +.--. .+. ++++++.+++. +..+. .+.
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l-~~~~~-d~~--i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 285 (366)
T 3k26_A 213 PFISQKIHFPDFSTRDIHRNYVDCVRWLGDLI-LSKSC-ENA--IVCWKPGKMEDDIDKIKPSESNVTILGRFD---YSQ 285 (366)
T ss_dssp CCCCEEECCCSEEECSSCSSCCCEEEEETTEE-EEECS-SSE--EEEEEESSTTCCGGGCCTTCCCEEEEEEEE---CSS
T ss_pred cccceeeccCccccccCCcceEEEEEEcCCEE-EEEec-CCE--EEEEeCCCccccccccccCCcchheecccc---ccC
Confidence 446677788886544 33222 332 67889888865 33332 123
Q ss_pred Ccchhhhhc----cceeEEEecCCceeEEEcccccce
Q 020740 281 KKVDFIEQF----NEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 281 k~iqFiE~f----~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
..+..+... +..|+.=-++..+++||+.+.+..
T Consensus 286 ~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 322 (366)
T 3k26_A 286 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPH 322 (366)
T ss_dssp CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGG
T ss_pred CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCc
Confidence 333333322 566777788999999999987644
No 12
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.01 Score=48.67 Aligned_cols=211 Identities=11% Similarity=0.174 Sum_probs=121.6
Q ss_pred cceeEEeec-cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEe------cCC------C
Q 020740 96 SKIIEIVAA-RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYA------SDN------F 162 (322)
Q Consensus 96 S~V~EIv~a-~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~------sd~------f 162 (322)
.+|.-+... ...++.-...|....||..+++....+... ...|.++-++.+.+.|++.+.-. -.+ .
T Consensus 19 ~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~ 97 (313)
T 3odt_A 19 QDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTVVYTG-QGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPL 97 (313)
T ss_dssp SCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-
T ss_pred CCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEEeecC-CccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcc
Confidence 344444332 446777778899999999999888887765 55678888888777666644210 000 1
Q ss_pred ceeeeeeeehhhhH-hCCC------CCCCcceee-----cccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEE
Q 020740 163 SSLRCRSTRIEYIR-RGKP------DAGFALFES-----ESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM 227 (322)
Q Consensus 163 S~LkCr~~~~e~i~-~gk~------~~g~~LFe~-----~~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlknYs~ 227 (322)
..+..+..++..+. .|+. +..-.++.. ..-.+.+ -+.|...++..++....++..++||......
T Consensus 98 ~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 177 (313)
T 3odt_A 98 YTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIK 177 (313)
T ss_dssp CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEE
T ss_pred cchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEE
Confidence 11111111111110 0000 000001110 0001222 2355555666777777899999999766666
Q ss_pred EEEe-cccceeeEEEcCCEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhhc-cceeEEEecCCceeEE
Q 020740 228 LYSI-SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF-NEKLLVKQENENLQIL 305 (322)
Q Consensus 228 LYsI-sde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f-~EkLLIKQE~~~LqI~ 305 (322)
.+.. ....+..+.++|+--++.-- ..+ -++++++.+|+.+..+.. | ..++.-+.-. +.+|+.=-.+..+++|
T Consensus 178 ~~~~~~~~~i~~~~~~~~~~~~~~~-~dg--~i~i~d~~~~~~~~~~~~--~-~~~i~~~~~~~~~~l~~~~~dg~v~iw 251 (313)
T 3odt_A 178 TFSGIHNDVVRHLAVVDDGHFISCS-NDG--LIKLVDMHTGDVLRTYEG--H-ESFVYCIKLLPNGDIVSCGEDRTVRIW 251 (313)
T ss_dssp EECSSCSSCEEEEEEEETTEEEEEE-TTS--EEEEEETTTCCEEEEEEC--C-SSCEEEEEECTTSCEEEEETTSEEEEE
T ss_pred EEeccCcccEEEEEEcCCCeEEEcc-CCC--eEEEEECCchhhhhhhhc--C-CceEEEEEEecCCCEEEEecCCEEEEE
Confidence 6665 66778888887543333322 223 378999999999988762 2 3333323222 2268888899999999
Q ss_pred Ecccccce
Q 020740 306 DVRISLFL 313 (322)
Q Consensus 306 Dl~~~~~~ 313 (322)
|+.+.+..
T Consensus 252 d~~~~~~~ 259 (313)
T 3odt_A 252 SKENGSLK 259 (313)
T ss_dssp CTTTCCEE
T ss_pred ECCCCcee
Confidence 99987654
No 13
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=97.58 E-value=0.001 Score=58.66 Aligned_cols=206 Identities=14% Similarity=0.155 Sum_probs=122.5
Q ss_pred ccceeEEeecc---chhhhhhccccceeeeccc---cc-EEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeee
Q 020740 95 RSKIIEIVAAR---DIVFALAQSGVCAAFCRET---NQ-RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRC 167 (322)
Q Consensus 95 RS~V~EIv~a~---diI~aL~~sG~c~af~r~t---n~-~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkC 167 (322)
...|..+.+.. .+++.-...|....||..+ ++ ..|.+...+..-|.++-++...+.|++.| .|. .++.
T Consensus 63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s---~dg--~i~v 137 (437)
T 3gre_A 63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSS---KDG--QIIV 137 (437)
T ss_dssp TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEE---TTS--EEEE
T ss_pred CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEe---CCC--EEEE
Confidence 35666666655 3677777889999999877 54 22333334677899999998777666644 222 2332
Q ss_pred eeeehhhhHhCCCCCCC--cceeecccC---CCCeE---E-ecCCCceEEEEecCCCeEEEEeccCcEEEEEecc----c
Q 020740 168 RSTRIEYIRRGKPDAGF--ALFESESLK---WPGFV---E-FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----K 234 (322)
Q Consensus 168 r~~~~e~i~~gk~~~g~--~LFe~~~L~---~PgFV---E-FDdvNgkilty~aq~~~YrVfdlknYs~LYsIsd----e 234 (322)
-.+ +.-..|+.-.-. ..-....+. ..+++ . +...++..++....++..++||+++.+++..+.. .
T Consensus 138 wd~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~ 215 (437)
T 3gre_A 138 LKV--NHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHG 215 (437)
T ss_dssp EEE--EEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGC
T ss_pred EEe--ccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCC
Confidence 222 110111110000 000000000 11111 1 1124577888888899999999999999999865 6
Q ss_pred ceeeEEEcC-CEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhh---hc---cceeEEEecCCceeEEEc
Q 020740 235 NVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE---QF---NEKLLVKQENENLQILDV 307 (322)
Q Consensus 235 ~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE---~f---~EkLLIKQE~~~LqI~Dl 307 (322)
.|..+.++| |-.|+.-... +. ++|.++.+|+.+..+.+ ....+|.-+. .| +..|+.=-.+..+++||+
T Consensus 216 ~v~~~~~s~~~~~l~s~~~d-g~--i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~ 290 (437)
T 3gre_A 216 AVSSICIDEECCVLILGTTR-GI--IDIWDIRFNVLIRSWSF--GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNF 290 (437)
T ss_dssp CEEEEEECTTSCEEEEEETT-SC--EEEEETTTTEEEEEEBC--TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEET
T ss_pred ceEEEEECCCCCEEEEEcCC-Ce--EEEEEcCCccEEEEEec--CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEc
Confidence 788888874 4444433332 22 68999999999987753 2233433331 11 346666778889999999
Q ss_pred ccccc
Q 020740 308 RISLF 312 (322)
Q Consensus 308 ~~~~~ 312 (322)
.+.+.
T Consensus 291 ~~~~~ 295 (437)
T 3gre_A 291 VKGHC 295 (437)
T ss_dssp TTTEE
T ss_pred CCCcE
Confidence 87663
No 14
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=97.53 E-value=0.0024 Score=53.49 Aligned_cols=198 Identities=13% Similarity=0.160 Sum_probs=125.9
Q ss_pred ccceeEEeec------cchhhhhhccccceeeecccccEEEEecC----CCCceEEEEeeecCCC---eEEEEEeEecCC
Q 020740 95 RSKIIEIVAA------RDIVFALAQSGVCAAFCRETNQRICFLNV----TADEVIRSLFYNKNND---SLITVSVYASDN 161 (322)
Q Consensus 95 RS~V~EIv~a------~diI~aL~~sG~c~af~r~tn~~iC~lN~----s~dEvIrSiFyNk~Nd---SlItvSvy~sd~ 161 (322)
..+|.-+-+. +..+++-+..|....||..+++.+..+.. ..++-|.++-++...+ .++.+. ..|.
T Consensus 18 ~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~--~~dg 95 (366)
T 3k26_A 18 NQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA--GSRG 95 (366)
T ss_dssp CSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE--ETTC
T ss_pred CCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe--cCCC
Confidence 3455555554 45577777788889999998888776653 3557788888887643 344321 2232
Q ss_pred CceeeeeeeehhhhHhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEe-----cc
Q 020740 162 FSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI-----SD 233 (322)
Q Consensus 162 fS~LkCr~~~~e~i~~gk~~~g~~LFe~~~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsI-----sd 233 (322)
.++.- ++..|+ ++..-. .+.+ -+.|...++..++....++..++||+++-+.+..+ ..
T Consensus 96 --~i~v~-----d~~~~~-----~~~~~~--~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 161 (366)
T 3k26_A 96 --IIRII-----NPITMQ-----CIKHYV--GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR 161 (366)
T ss_dssp --EEEEE-----CTTTCC-----EEEEEE--SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCS
T ss_pred --EEEEE-----Echhce-----Eeeeec--CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccccc
Confidence 23322 222222 122111 1333 46688778888888888999999999999998887 56
Q ss_pred cceeeEEEcC-CEEEEEEecCCCeeEEEEEEeecCceeeeeee-------------------------ccccCCcchhhh
Q 020740 234 KNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNH-------------------------LLHRNKKVDFIE 287 (322)
Q Consensus 234 e~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~-------------------------~L~~sk~iqFiE 287 (322)
..|..+.++| |-.|+.-.. .+ -++++++.+++.+..+.. ...+...+.-+.
T Consensus 162 ~~v~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 238 (366)
T 3k26_A 162 DEVLSADYDLLGEKIMSCGM-DH--SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVR 238 (366)
T ss_dssp SCEEEEEECTTSSEEEEEET-TS--CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEE
T ss_pred CceeEEEECCCCCEEEEecC-CC--CEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEE
Confidence 6788888874 334343332 22 368899998887654431 000233443333
Q ss_pred hccceeEEEecCCceeEEEccccc
Q 020740 288 QFNEKLLVKQENENLQILDVRISL 311 (322)
Q Consensus 288 ~f~EkLLIKQE~~~LqI~Dl~~~~ 311 (322)
-.++.|+.--.+..+++||+.+.+
T Consensus 239 ~~~~~l~~~~~d~~i~~wd~~~~~ 262 (366)
T 3k26_A 239 WLGDLILSKSCENAIVCWKPGKME 262 (366)
T ss_dssp EETTEEEEECSSSEEEEEEESSTT
T ss_pred EcCCEEEEEecCCEEEEEeCCCcc
Confidence 347788888899999999998754
No 15
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.52 E-value=0.018 Score=48.02 Aligned_cols=207 Identities=12% Similarity=0.148 Sum_probs=124.7
Q ss_pred cccceeEEeec--cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeee
Q 020740 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (322)
Q Consensus 94 kRS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~ 171 (322)
....|..+... ...++.....|....||..+++.+..+. ...-|.++-++..+..+++.+.-....-..++...+
T Consensus 73 h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~- 149 (369)
T 3zwl_B 73 HTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEI- 149 (369)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEE-
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEe-
Confidence 34566666655 4577777888999999999999999888 566788898888777666643210000022322222
Q ss_pred hhhhHhCCCCCC------Ccc---eeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccC-cEEEEEec--ccceeeE
Q 020740 172 IEYIRRGKPDAG------FAL---FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSIS--DKNVQEI 239 (322)
Q Consensus 172 ~e~i~~gk~~~g------~~L---Fe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlkn-Ys~LYsIs--de~VqEI 239 (322)
..++.... .++ .........--+.|+. +|+.++....++..++||+++ ...+..+. ...|..+
T Consensus 150 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 224 (369)
T 3zwl_B 150 ----ERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST-KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM 224 (369)
T ss_dssp ----EECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG-GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEE
T ss_pred ----cCCccceeecccccceeeeccCCcCccceeEEEEcC-CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEE
Confidence 22211000 011 1111111334456665 566777778899999999998 88776665 5678888
Q ss_pred EEcC-CEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCC--------------ceeE
Q 020740 240 KISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENE--------------NLQI 304 (322)
Q Consensus 240 kIS~-Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~--------------~LqI 304 (322)
.++| |-+|+.-. ..+ -+.++++.+|+.+..+.+. ..-..+.| -.-+..+++--.+. .+++
T Consensus 225 ~~~~~~~~l~~~~-~d~--~i~v~d~~~~~~~~~~~~~-~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 299 (369)
T 3zwl_B 225 QFSPDLTYFITSS-RDT--NSFLVDVSTLQVLKKYETD-CPLNTAVI-TPLKEFIILGGGQEAKDVTTTSANEGKFEARF 299 (369)
T ss_dssp EECTTSSEEEEEE-TTS--EEEEEETTTCCEEEEEECS-SCEEEEEE-CSSSSEEEEEECCC-------------CEEEE
T ss_pred EECCCCCEEEEec-CCc--eEEEEECCCCceeeeecCC-CCceeEEe-cCCCceEEEeecCCCceEEEEecCCCcceeEE
Confidence 8884 44444433 333 3688999999999877631 11112222 12345555544444 7899
Q ss_pred EEcccccce
Q 020740 305 LDVRISLFL 313 (322)
Q Consensus 305 ~Dl~~~~~~ 313 (322)
||+.+.+..
T Consensus 300 ~d~~~~~~~ 308 (369)
T 3zwl_B 300 YHKIFEEEI 308 (369)
T ss_dssp EETTTCCEE
T ss_pred EecCCCcch
Confidence 998876544
No 16
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=97.51 E-value=0.0029 Score=54.38 Aligned_cols=203 Identities=9% Similarity=0.043 Sum_probs=120.4
Q ss_pred cceeEEeeccchhhhhhccccceeeeccccc------EEEEecCCCCceEEEEeeecC----C---CeEEEEEeEecCCC
Q 020740 96 SKIIEIVAARDIVFALAQSGVCAAFCRETNQ------RICFLNVTADEVIRSLFYNKN----N---DSLITVSVYASDNF 162 (322)
Q Consensus 96 S~V~EIv~a~diI~aL~~sG~c~af~r~tn~------~iC~lN~s~dEvIrSiFyNk~----N---dSlItvSvy~sd~f 162 (322)
..|.-+-...+++++-...|....||..+++ .+..+. .+..-|.++-++.. . ..|++.| .|.
T Consensus 17 ~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~---~dg- 91 (397)
T 1sq9_A 17 ADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTS---FSG- 91 (397)
T ss_dssp SCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEE---TTS-
T ss_pred cCeEEEEecCCeEEEEcCCCEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEc---CCC-
Confidence 3455555555677777788999999999988 555555 45556888888876 4 4444432 232
Q ss_pred ceeeeeeeehhhhHhCCCCCCCcceeeccc------CCCCeEEecC---CCceE-EEEecCCCeEEEEeccC------cE
Q 020740 163 SSLRCRSTRIEYIRRGKPDAGFALFESESL------KWPGFVEFDD---VNGKV-LTYSAQDSIYKVFDLKN------YT 226 (322)
Q Consensus 163 S~LkCr~~~~e~i~~gk~~~g~~LFe~~~L------~~PgFVEFDd---vNgki-lty~aq~~~YrVfdlkn------Ys 226 (322)
.++...+. .++......+..-... ...--+.|.. .+++. ++....++..++||+.+ -+
T Consensus 92 -~i~iw~~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 92 -DLLFYRIT-----REDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp -CEEEEEEE-----ECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred -CEEEEEcc-----CCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 34333332 2221000001111111 2233467772 34555 66677899999999998 55
Q ss_pred EEE-----Ee---------cccceeeEEEcCCEEEEEEecCCCeeEEEEEEeecCceeeeeeecccc---CCcchhhh--
Q 020740 227 MLY-----SI---------SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR---NKKVDFIE-- 287 (322)
Q Consensus 227 ~LY-----sI---------sde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~---sk~iqFiE-- 287 (322)
.+. .+ ....+..+.++|.- +++.-...+. +.++++.+++.+..+...-.+ ..++.-+.
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~--i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~ 242 (397)
T 1sq9_A 166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGT--VQISELSTLRPLYNFESQHSMINNSNSIRSVKFS 242 (397)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSE--EEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCc--EEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence 444 44 46778999999644 3444334443 788999999988877631001 33332222
Q ss_pred hccceeEEEecC---CceeEEEcccccc
Q 020740 288 QFNEKLLVKQEN---ENLQILDVRISLF 312 (322)
Q Consensus 288 ~f~EkLLIKQE~---~~LqI~Dl~~~~~ 312 (322)
.-+..|+.--++ ..+++||+.+.+.
T Consensus 243 ~~~~~l~~~~~d~~~g~i~i~d~~~~~~ 270 (397)
T 1sq9_A 243 PQGSLLAIAHDSNSFGCITLYETEFGER 270 (397)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred CCCCEEEEEecCCCCceEEEEECCCCcc
Confidence 135677777777 8999999988654
No 17
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.50 E-value=0.025 Score=50.05 Aligned_cols=203 Identities=14% Similarity=0.113 Sum_probs=122.5
Q ss_pred ccceeEEeeccchhhhhhccccceeeeccc-ccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehh
Q 020740 95 RSKIIEIVAARDIVFALAQSGVCAAFCRET-NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (322)
Q Consensus 95 RS~V~EIv~a~diI~aL~~sG~c~af~r~t-n~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e 173 (322)
...|..+-...++++.-...|....||..+ ++.+..+.. +..-|.++-++.....|++.| .|. .++. .
T Consensus 176 ~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~s~~---~d~--~v~i--w--- 244 (401)
T 4aez_A 176 QARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQG-HSSEVCGLAWRSDGLQLASGG---NDN--VVQI--W--- 244 (401)
T ss_dssp SSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEEC-CSSCEEEEEECTTSSEEEEEE---TTS--CEEE--E---
T ss_pred CCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcC-CCCCeeEEEEcCCCCEEEEEe---CCC--eEEE--c---
Confidence 445666655667777777888888888874 444555544 455677888887655555533 222 2222 2
Q ss_pred hhHhCCCCCCCcceee-cccCCCCeEEecCCCceEEEEec--CCCeEEEEeccCcEEEEEecc-cceeeEEEcC-CEEEE
Q 020740 174 YIRRGKPDAGFALFES-ESLKWPGFVEFDDVNGKVLTYSA--QDSIYKVFDLKNYTMLYSISD-KNVQEIKISP-GIMLL 248 (322)
Q Consensus 174 ~i~~gk~~~g~~LFe~-~~L~~PgFVEFDdvNgkilty~a--q~~~YrVfdlknYs~LYsIsd-e~VqEIkIS~-Gimll 248 (322)
+++. +.+++.- ..-.+.--+.|...+..+++... .++..++||+.+-+++..+.. ..+..+.++| |-.++
T Consensus 245 d~~~-----~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 319 (401)
T 4aez_A 245 DARS-----SIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIM 319 (401)
T ss_dssp ETTC-----SSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSSCEEEEEECSSSSEEE
T ss_pred cCCC-----CCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCCCCeEE
Confidence 2222 2233332 12223445788877777776554 799999999999998888753 4578888874 44433
Q ss_pred EEec-CCCeeEEEEEEeecCceeeeeeeccccCCcchhhhh--ccceeEEEecCCceeEEEcccccceeee
Q 020740 249 IFTK-ASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVRISLFLPLQ 316 (322)
Q Consensus 249 ~~q~-~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~--f~EkLLIKQE~~~LqI~Dl~~~~~~~~~ 316 (322)
..-+ ..+ -++|+++.+|+........ .+...+--+.. -+..|+.=-.++.+++||+.+.+.+...
T Consensus 320 ~~~g~~dg--~i~v~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 320 STHGFPDN--NLSIWSYSSSGLTKQVDIP-AHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp EEECTTTC--EEEEEEEETTEEEEEEEEE-CCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-------
T ss_pred EEeecCCC--cEEEEecCCccceeEEEec-CCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccccc
Confidence 3322 333 3788999998877765532 22444433322 2456777778999999999988766543
No 18
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.48 E-value=0.024 Score=47.71 Aligned_cols=195 Identities=18% Similarity=0.285 Sum_probs=121.2
Q ss_pred ccceeEEeec--cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020740 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (322)
Q Consensus 95 RS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~ 172 (322)
...|..+... ..+++.-...|....||..+++.+..+... ...|.++-++.....|++.| .|. . ++.-
T Consensus 65 ~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~s~~---~d~--~--i~iw-- 134 (312)
T 4ery_A 65 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH-SNYVFCCNFNPQSNLIVSGS---FDE--S--VRIW-- 134 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECC-SSCEEEEEECSSSSEEEEEE---TTS--C--EEEE--
T ss_pred CCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCC-CCCEEEEEEcCCCCEEEEEe---CCC--c--EEEE--
Confidence 3456666554 346777778899999999999988888654 45577888888777666643 222 2 2222
Q ss_pred hhhHhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEeccc---ceeeEEEcC-CE
Q 020740 173 EYIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK---NVQEIKISP-GI 245 (322)
Q Consensus 173 e~i~~gk~~~g~~LFe~~~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde---~VqEIkIS~-Gi 245 (322)
+++.|+. +..- -.+.+ -+.|+. +|+.++....++..++||+++-+.+..+... .+.-+.++| |-
T Consensus 135 -d~~~~~~-----~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (312)
T 4ery_A 135 -DVKTGKC-----LKTL--PAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGK 205 (312)
T ss_dssp -ETTTCCE-----EEEE--CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSS
T ss_pred -ECCCCEE-----EEEe--cCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCC
Confidence 2223321 1110 01122 245654 5667777778999999999999988887543 355566764 33
Q ss_pred EEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCc--c--hhhhhccceeEEEecCCceeEEEcccccce
Q 020740 246 MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKK--V--DFIEQFNEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 246 mll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~--i--qFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
+|+.- ...+ -++|+++.+|+.+..+.. |.... + .|--.-+..|+.=-++..+++||+.+.++.
T Consensus 206 ~l~~~-~~d~--~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~ 272 (312)
T 4ery_A 206 YILAA-TLDN--TLKLWDYSKGKCLKTYTG--HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272 (312)
T ss_dssp EEEEE-ETTT--EEEEEETTTTEEEEEECS--SCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEE
T ss_pred EEEEE-cCCC--eEEEEECCCCcEEEEEEe--cCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhh
Confidence 43332 2333 368899999999887752 21111 1 111112445666668899999999987765
No 19
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=97.45 E-value=0.039 Score=46.44 Aligned_cols=192 Identities=14% Similarity=0.223 Sum_probs=121.7
Q ss_pred ceeEEeec--cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhh
Q 020740 97 KIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (322)
Q Consensus 97 ~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~ 174 (322)
+|.-+-.. ...++.-...|....|+..+++.+..+.... .-|.++-++...+.|++.| .|. .++.- +
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~s~~---~d~--~i~vw-----d 93 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHK-LGISDVAWSSDSNLLVSAS---DDK--TLKIW-----D 93 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCS-SCEEEEEECTTSSEEEEEE---TTS--EEEEE-----E
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCC-CceEEEEEcCCCCEEEEEC---CCC--EEEEE-----E
Confidence 44444433 3456666778999999999999999887544 4577888888777666543 222 22222 2
Q ss_pred hHhCCCCCCCcceeecccCCCCe---EEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc--cceeeEEEcC-CEEEE
Q 020740 175 IRRGKPDAGFALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP-GIMLL 248 (322)
Q Consensus 175 i~~gk~~~g~~LFe~~~L~~PgF---VEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsd--e~VqEIkIS~-Gimll 248 (322)
+..|+. +.. .-.|.+. +.|.. ++..++....++..++||+++-+++..+.. ..|..+.++| |-+++
T Consensus 94 ~~~~~~-----~~~--~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 165 (312)
T 4ery_A 94 VSSGKC-----LKT--LKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIV 165 (312)
T ss_dssp TTTCCE-----EEE--EECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred CCCCcE-----EEE--EcCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEE
Confidence 222221 111 0123333 35655 445556567899999999999998888763 5678888874 44433
Q ss_pred EEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEEcccccc
Q 020740 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDVRISLF 312 (322)
Q Consensus 249 ~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~~ 312 (322)
.--. .+ -++++++.+|+.+..+.. +...++..+. .-+.+|+.=-.+..+++||+.+.+.
T Consensus 166 ~~~~-d~--~i~~wd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 226 (312)
T 4ery_A 166 SSSY-DG--LCRIWDTASGQCLKTLID--DDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226 (312)
T ss_dssp EEET-TS--CEEEEETTTCCEEEEECC--SSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE
T ss_pred EEeC-CC--cEEEEECCCCceeeEEec--cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcE
Confidence 3332 23 268899999998876642 2334443332 2356788888999999999988654
No 20
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=97.45 E-value=0.0015 Score=56.28 Aligned_cols=202 Identities=12% Similarity=0.115 Sum_probs=124.2
Q ss_pred cccceeEEeec---cchhhhhhccccceeeeccccc------EEEEe--cCCCCceEEEEeeecCCCeEEEEEeEecCCC
Q 020740 94 KRSKIIEIVAA---RDIVFALAQSGVCAAFCRETNQ------RICFL--NVTADEVIRSLFYNKNNDSLITVSVYASDNF 162 (322)
Q Consensus 94 kRS~V~EIv~a---~diI~aL~~sG~c~af~r~tn~------~iC~l--N~s~dEvIrSiFyNk~NdSlItvSvy~sd~f 162 (322)
....|..+-.. ..+++.-...|....||..+++ ....+ -..+..-|.++-++..+..++.+. ..|.
T Consensus 112 h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~--~~dg- 188 (416)
T 2pm9_A 112 HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA--GSSN- 188 (416)
T ss_dssp SSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEE--SSSS-
T ss_pred CccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEE--cCCC-
Confidence 44566666665 4477777788999999998887 33332 234556788888887744444421 1222
Q ss_pred ceeeeeeeehhhhHhCCCCCCCcceeecc-------cCCCCeEEecCCCceEEEEecCCC---eEEEEeccCc-EEEEEe
Q 020740 163 SSLRCRSTRIEYIRRGKPDAGFALFESES-------LKWPGFVEFDDVNGKVLTYSAQDS---IYKVFDLKNY-TMLYSI 231 (322)
Q Consensus 163 S~LkCr~~~~e~i~~gk~~~g~~LFe~~~-------L~~PgFVEFDdvNgkilty~aq~~---~YrVfdlknY-s~LYsI 231 (322)
.++.. +++.++ ++..-.. -...--+.|...++..++....++ ..++||+++. ..+..+
T Consensus 189 -~v~iw-----d~~~~~-----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~ 257 (416)
T 2pm9_A 189 -FASIW-----DLKAKK-----EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTL 257 (416)
T ss_dssp -CEEEE-----ETTTTE-----EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCC
T ss_pred -CEEEE-----ECCCCC-----cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEe
Confidence 22222 222222 1111110 122334678877767777677777 9999999986 444444
Q ss_pred c---ccceeeEEEcC--CEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEE
Q 020740 232 S---DKNVQEIKISP--GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILD 306 (322)
Q Consensus 232 s---de~VqEIkIS~--Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~D 306 (322)
. ...|..+.++| |-+|+.-... +. ++|+++.+|+.+..+..--..-..+.|-..-...|+.--.+..++|||
T Consensus 258 ~~~~~~~v~~~~~s~~~~~~l~s~~~d-g~--v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~ 334 (416)
T 2pm9_A 258 NQGHQKGILSLDWCHQDEHLLLSSGRD-NT--VLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQT 334 (416)
T ss_dssp CSCCSSCEEEEEECSSCSSCEEEEESS-SE--EEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEE
T ss_pred ecCccCceeEEEeCCCCCCeEEEEeCC-CC--EEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEE
Confidence 3 46788899985 5555554433 32 789999999999887631122234454443235677777899999999
Q ss_pred cccccc
Q 020740 307 VRISLF 312 (322)
Q Consensus 307 l~~~~~ 312 (322)
+.+.+.
T Consensus 335 ~~~~~~ 340 (416)
T 2pm9_A 335 LQNLTN 340 (416)
T ss_dssp SCCCCC
T ss_pred ccCCCC
Confidence 988653
No 21
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.45 E-value=0.012 Score=48.73 Aligned_cols=186 Identities=18% Similarity=0.170 Sum_probs=114.9
Q ss_pred hhhhhhccccceeeecccccEEE---Eec-CCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCC
Q 020740 107 IVFALAQSGVCAAFCRETNQRIC---FLN-VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA 182 (322)
Q Consensus 107 iI~aL~~sG~c~af~r~tn~~iC---~lN-~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~ 182 (322)
++++-. .|....||..+++... .+. ..+..-|.++-++.+...|++.+ .| ..++...+ ..++
T Consensus 65 ~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d--~~i~~~d~-----~~~~--- 130 (337)
T 1gxr_A 65 HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG---EA--STLSIWDL-----AAPT--- 130 (337)
T ss_dssp EEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEE---SS--SEEEEEEC-----CCC----
T ss_pred EEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEc---CC--CcEEEEEC-----CCCC---
Confidence 444444 7888999988776333 222 25677889999998777666643 22 23333322 1111
Q ss_pred CCcceeecccCCC---CeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcC-CEEEEEEecCCCe
Q 020740 183 GFALFESESLKWP---GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP-GIMLLIFTKASGH 256 (322)
Q Consensus 183 g~~LFe~~~L~~P---gFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~-Gimll~~q~~~~~ 256 (322)
+......-.+. --+.|.. +++.++....++..++||+++-+.+..+. ...+..+.++| |-.++.-.. .+
T Consensus 131 --~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg- 205 (337)
T 1gxr_A 131 --PRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL-DN- 205 (337)
T ss_dssp ---EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-TS-
T ss_pred --cceeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec-CC-
Confidence 10111111122 2356665 56666666788999999999999888876 46688888884 444444332 23
Q ss_pred eEEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEEccccccee
Q 020740 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISLFLP 314 (322)
Q Consensus 257 iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~~ 314 (322)
.++++++.+|+.+..+.+. ..-..+.|- .-+..|++--++..+++||+.+.+...
T Consensus 206 -~i~~~d~~~~~~~~~~~~~-~~v~~~~~s-~~~~~l~~~~~~~~i~~~~~~~~~~~~ 260 (337)
T 1gxr_A 206 -TVRSWDLREGRQLQQHDFT-SQIFSLGYC-PTGEWLAVGMESSNVEVLHVNKPDKYQ 260 (337)
T ss_dssp -EEEEEETTTTEEEEEEECS-SCEEEEEEC-TTSSEEEEEETTSCEEEEETTSSCEEE
T ss_pred -cEEEEECCCCceEeeecCC-CceEEEEEC-CCCCEEEEEcCCCcEEEEECCCCCeEE
Confidence 3688999999988876531 111223321 235678888889999999999877643
No 22
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=97.43 E-value=0.0086 Score=53.54 Aligned_cols=198 Identities=12% Similarity=0.141 Sum_probs=123.3
Q ss_pred cccceeEEeec-cchhhhhhccccceeeecccccEEEEec---CCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeee
Q 020740 94 KRSKIIEIVAA-RDIVFALAQSGVCAAFCRETNQRICFLN---VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRS 169 (322)
Q Consensus 94 kRS~V~EIv~a-~diI~aL~~sG~c~af~r~tn~~iC~lN---~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~ 169 (322)
..+.|..+.+. ++.+++-...|....||..+|+.+..+. ..++..|.+|-++.+...|++.| .|. .++.
T Consensus 81 ~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs---~d~--~i~i-- 153 (344)
T 4gqb_B 81 TEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGS---KDI--CIKV-- 153 (344)
T ss_dssp ESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEE---TTS--CEEE--
T ss_pred cCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEe---CCC--eEEE--
Confidence 45667777665 4566667788999999999998765433 36788899999998777776643 222 2222
Q ss_pred eehhhhHhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc----cceeeEEEc
Q 020740 170 TRIEYIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KNVQEIKIS 242 (322)
Q Consensus 170 ~~~e~i~~gk~~~g~~LFe~~~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsd----e~VqEIkIS 242 (322)
- ++..|+ ++..- -.|.+ -+.|...+..+++-...|+..++||+++.+.+..+.. ..+.-+..+
T Consensus 154 w---d~~~~~-----~~~~~--~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (344)
T 4gqb_B 154 W---DLAQQV-----VLSSY--RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWH 223 (344)
T ss_dssp E---ETTTTE-----EEEEE--CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEEC
T ss_pred E---ECCCCc-----EEEEE--cCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeec
Confidence 2 233332 12111 11333 3467666666666667899999999999988877742 235556666
Q ss_pred C--CEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhh--hccceeEE-EecCCceeEEEccccccee
Q 020740 243 P--GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNEKLLV-KQENENLQILDVRISLFLP 314 (322)
Q Consensus 243 ~--Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE--~f~EkLLI-KQE~~~LqI~Dl~~~~~~~ 314 (322)
| +.+++.-- ..+ -++|+++.+|+.+..+.. | ...|.=+. .-++++|+ =-++..++|||+.+.++..
T Consensus 224 p~~~~~l~sg~-~dg--~v~~wd~~~~~~~~~~~~--h-~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~ 294 (344)
T 4gqb_B 224 PQQSEVFVFGD-ENG--TVSLVDTKSTSCVLSSAV--H-SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR 294 (344)
T ss_dssp SSCTTEEEEEE-TTS--EEEEEESCC--CCEEEEC--C-SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE
T ss_pred CCCCcceEEec-cCC--cEEEEECCCCcEEEEEcC--C-CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE
Confidence 4 33433322 222 268999999999987762 2 33333222 12445554 5689999999999887654
No 23
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.43 E-value=0.015 Score=50.20 Aligned_cols=181 Identities=12% Similarity=0.120 Sum_probs=116.5
Q ss_pred hccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceeecc
Q 020740 112 AQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESES 191 (322)
Q Consensus 112 ~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~~~ 191 (322)
...|...+||..+++.+..+.... -+.++-++..+..|++. .+++ ..++.- + +..|+ .+-....
T Consensus 51 ~~d~~i~v~d~~~~~~~~~~~~~~--~v~~~~~spdg~~l~~~---~~~~-~~v~v~--d---~~~~~-----~~~~~~~ 114 (391)
T 1l0q_A 51 AHSNDVSIIDTATNNVIATVPAGS--SPQGVAVSPDGKQVYVT---NMAS-STLSVI--D---TTSNT-----VAGTVKT 114 (391)
T ss_dssp GGGTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEE---ETTT-TEEEEE--E---TTTTE-----EEEEEEC
T ss_pred CCCCeEEEEECCCCeEEEEEECCC--CccceEECCCCCEEEEE---ECCC-CEEEEE--E---CCCCe-----EEEEEeC
Confidence 467889999999999998887655 77889888776666542 2232 223332 2 22222 1111112
Q ss_pred cCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec-ccceeeEEEcC-CEEEEEEecCCCeeEEEEEEeecCce
Q 020740 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTV 269 (322)
Q Consensus 192 L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs-de~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG~~ 269 (322)
-..|--+.|+..+..++.-...++..++||+.+-+.+..+. +..+..+.++| |-.|++.....+. +.++++.+|+.
T Consensus 115 ~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~--v~~~d~~~~~~ 192 (391)
T 1l0q_A 115 GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMS--ISVIDTVTNSV 192 (391)
T ss_dssp SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTE--EEEEETTTTEE
T ss_pred CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCE--EEEEECCCCeE
Confidence 23455677877666665556779999999999998877776 46678888874 4344444444444 67899999998
Q ss_pred eeeeeeccccCCcchhhhhccceeEEEe---cCCceeEEEcccccc
Q 020740 270 LKSFNHLLHRNKKVDFIEQFNEKLLVKQ---ENENLQILDVRISLF 312 (322)
Q Consensus 270 l~~f~~~L~~sk~iqFiE~f~EkLLIKQ---E~~~LqI~Dl~~~~~ 312 (322)
+..+.+. ..-..+.| -.-+.+|++-- .+..+.+||+.+.+.
T Consensus 193 ~~~~~~~-~~~~~~~~-~~~g~~l~~~~~~~~~~~v~~~d~~~~~~ 236 (391)
T 1l0q_A 193 IDTVKVE-AAPSGIAV-NPEGTKAYVTNVDKYFNTVSMIDTGTNKI 236 (391)
T ss_dssp EEEEECS-SEEEEEEE-CTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred EEEEecC-CCccceEE-CCCCCEEEEEecCcCCCcEEEEECCCCeE
Confidence 8766531 11112222 22366788876 588999999987654
No 24
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=97.42 E-value=0.014 Score=50.76 Aligned_cols=183 Identities=13% Similarity=0.104 Sum_probs=114.6
Q ss_pred cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCC
Q 020740 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (322)
Q Consensus 105 ~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~ 184 (322)
...+++-...|....||..+++.+..+. .+..-|.++-++...+.|++.| .|. .++. - ++..|+.
T Consensus 109 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s---~d~--~i~i--w---d~~~~~~---- 173 (420)
T 3vl1_A 109 MRRFILGTTEGDIKVLDSNFNLQREIDQ-AHVSEITKLKFFPSGEALISSS---QDM--QLKI--W---SVKDGSN---- 173 (420)
T ss_dssp SCEEEEEETTSCEEEECTTSCEEEEETT-SSSSCEEEEEECTTSSEEEEEE---TTS--EEEE--E---ETTTCCC----
T ss_pred CCEEEEEECCCCEEEEeCCCcceeeecc-cccCccEEEEECCCCCEEEEEe---CCC--eEEE--E---eCCCCcC----
Confidence 3466777788999999999998877765 4556788899998777666543 222 2222 2 2333332
Q ss_pred cceeecccCCCCe---EEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc-----cceeeEEE---------------
Q 020740 185 ALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-----KNVQEIKI--------------- 241 (322)
Q Consensus 185 ~LFe~~~L~~PgF---VEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsd-----e~VqEIkI--------------- 241 (322)
+..- -.|.+. +.|.. +|+.++....|+..++||+++-+.+..+.. ..+..+.+
T Consensus 174 -~~~~--~~h~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 249 (420)
T 3vl1_A 174 -PRTL--IGHRATVTDIAIID-RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSK 249 (420)
T ss_dssp -CEEE--ECCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCC
T ss_pred -ceEE--cCCCCcEEEEEEcC-CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCc
Confidence 1110 123333 45765 455566667799999999999999888863 22333333
Q ss_pred ------c-CCEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhhc--cc-eeEEEecCCceeEEEccccc
Q 020740 242 ------S-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF--NE-KLLVKQENENLQILDVRISL 311 (322)
Q Consensus 242 ------S-~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f--~E-kLLIKQE~~~LqI~Dl~~~~ 311 (322)
+ +|-+|+.-... +. ++|+++.+|+.+..+.. ++...+.-+.-. +. .|+.=-++..+++||+++.+
T Consensus 250 v~~~~~s~~~~~l~~~~~d-g~--i~i~d~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 250 KNNLEFGTYGKYVIAGHVS-GV--ITVHNVFSKEQTIQLPS--KFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE 324 (420)
T ss_dssp CCTTCSSCTTEEEEEEETT-SC--EEEEETTTCCEEEEECC--TTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred ccceEEcCCCCEEEEEcCC-Ce--EEEEECCCCceeEEccc--ccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 3 34454443332 22 68899999998876642 223333222222 23 78888899999999999864
No 25
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=97.39 E-value=0.016 Score=49.91 Aligned_cols=186 Identities=12% Similarity=0.123 Sum_probs=115.4
Q ss_pred hhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcce
Q 020740 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187 (322)
Q Consensus 108 I~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LF 187 (322)
+++-...|...+||..+++.+..+.... -+.++-++.....|.+.+ ..|. .++ .. ++..|++ +-
T Consensus 5 ~vs~~~d~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~--~~d~--~i~--v~---d~~~~~~-----~~ 68 (391)
T 1l0q_A 5 YIANSESDNISVIDVTSNKVTATIPVGS--NPMGAVISPDGTKVYVAN--AHSN--DVS--II---DTATNNV-----IA 68 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEE--GGGT--EEE--EE---ETTTTEE-----EE
T ss_pred EEEcCCCCEEEEEECCCCeEEEEeecCC--CcceEEECCCCCEEEEEC--CCCC--eEE--EE---ECCCCeE-----EE
Confidence 3444566888999999999888887543 378899987766654422 1222 222 22 2222221 11
Q ss_pred eecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec-ccceeeEEEcC-CEEEEEEecCCCeeEEEEEEee
Q 020740 188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIE 265 (322)
Q Consensus 188 e~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs-de~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIe 265 (322)
.-..-..|--+.|+..+..+.+....++..++||+.+-+.+..+. ...+..+.++| |-.+++.....+ -+.++++.
T Consensus 69 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~--~v~~~d~~ 146 (391)
T 1l0q_A 69 TVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDK--TVSVINTV 146 (391)
T ss_dssp EEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTT--EEEEEETT
T ss_pred EEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCC--EEEEEECC
Confidence 111112566788988777777767778999999999988776665 35677888874 434333333334 46789999
Q ss_pred cCceeeeeeeccccCCcchhhhhccceeEEE-ecCCceeEEEcccccce
Q 020740 266 DGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRISLFL 313 (322)
Q Consensus 266 dG~~l~~f~~~L~~sk~iqFiE~f~EkLLIK-QE~~~LqI~Dl~~~~~~ 313 (322)
+|+.+..+..- ..-..+.|- .-+.+|++- ..+..+.+||+.+.+..
T Consensus 147 ~~~~~~~~~~~-~~~~~~~~~-~dg~~l~~~~~~~~~v~~~d~~~~~~~ 193 (391)
T 1l0q_A 147 TKAVINTVSVG-RSPKGIAVT-PDGTKVYVANFDSMSISVIDTVTNSVI 193 (391)
T ss_dssp TTEEEEEEECC-SSEEEEEEC-TTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCcEEEEEecC-CCcceEEEC-CCCCEEEEEeCCCCEEEEEECCCCeEE
Confidence 99988876531 111222221 224567555 46678999999886644
No 26
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=97.38 E-value=0.021 Score=47.15 Aligned_cols=191 Identities=12% Similarity=0.126 Sum_probs=118.4
Q ss_pred ccceeEEeec--cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020740 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (322)
Q Consensus 95 RS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~ 172 (322)
...|..+-.. ...+++-...|....||..+++.+..+.. +..-|.++-++.+...|++.+ .|. .++.-
T Consensus 141 ~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~---~dg--~i~~~---- 210 (337)
T 1gxr_A 141 APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG-HTDGASCIDISNDGTKLWTGG---LDN--TVRSW---- 210 (337)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEE---TTS--EEEEE----
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec-ccCceEEEEECCCCCEEEEEe---cCC--cEEEE----
Confidence 3445555544 34677777889999999999998888865 455688888888777776644 222 22222
Q ss_pred hhhHhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEe--cccceeeEEEcC-CEEEEE
Q 020740 173 EYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKISP-GIMLLI 249 (322)
Q Consensus 173 e~i~~gk~~~g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsI--sde~VqEIkIS~-Gimll~ 249 (322)
+++.|+ ++.....-..+--+.|+. +|+.++....++..++||+.+-+.. .+ ....+..+.++| |-+|+.
T Consensus 211 -d~~~~~-----~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~ 282 (337)
T 1gxr_A 211 -DLREGR-----QLQQHDFTSQIFSLGYCP-TGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVS 282 (337)
T ss_dssp -ETTTTE-----EEEEEECSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEE
T ss_pred -ECCCCc-----eEeeecCCCceEEEEECC-CCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECCCCCEEEE
Confidence 222222 122211111223355654 5667777778999999999987743 33 245688888884 444444
Q ss_pred EecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEEcc
Q 020740 250 FTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVR 308 (322)
Q Consensus 250 ~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~ 308 (322)
-.. .+ -++++++++|+.+....+. ..-..+.|- .-+.+|+.--++..+++||+.
T Consensus 283 ~~~-dg--~i~~~~~~~~~~~~~~~~~-~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 283 TGK-DN--LLNAWRTPYGASIFQSKES-SSVLSCDIS-VDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp EET-TS--EEEEEETTTCCEEEEEECS-SCEEEEEEC-TTSCEEEEEETTSCEEEEEEE
T ss_pred ecC-CC--cEEEEECCCCeEEEEecCC-CcEEEEEEC-CCCCEEEEecCCCeEEEEEEe
Confidence 333 33 3688999999988654321 111122322 235677888899999999985
No 27
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=97.38 E-value=0.0016 Score=57.71 Aligned_cols=202 Identities=9% Similarity=0.112 Sum_probs=116.5
Q ss_pred cccccccceeEEeec-cchhhhhhccccceeeecccccEEEEe---cCCCCceEEEEeeecCCCeEEEEEeEecCCCcee
Q 020740 90 PFLRKRSKIIEIVAA-RDIVFALAQSGVCAAFCRETNQRICFL---NVTADEVIRSLFYNKNNDSLITVSVYASDNFSSL 165 (322)
Q Consensus 90 pfl~kRS~V~EIv~a-~diI~aL~~sG~c~af~r~tn~~iC~l---N~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~L 165 (322)
....-...|..+.+. ++-+++-...|....||..+++.+... ...+...|.+|-++.+...|++.| .|. .+
T Consensus 89 ~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs---~dg--~v 163 (357)
T 4g56_B 89 AGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGG---KDF--SV 163 (357)
T ss_dssp EEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEE---TTS--CE
T ss_pred ccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEe---CCC--eE
Confidence 334455667777665 344555566788899999888766533 235677899999998877777644 222 22
Q ss_pred eeeeeehhhhHhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec----ccceee
Q 020740 166 RCRSTRIEYIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----DKNVQE 238 (322)
Q Consensus 166 kCr~~~~e~i~~gk~~~g~~LFe~~~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs----de~VqE 238 (322)
+. - ++..|+. +..- -.|.+ -+.|...+..+++....|+..++||+++-+.+..+. +..+..
T Consensus 164 ~i--w---d~~~~~~-----~~~~--~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~ 231 (357)
T 4g56_B 164 KV--W---DLSQKAV-----LKSY--NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTS 231 (357)
T ss_dssp EE--E---ETTTTEE-----EEEE--CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEE
T ss_pred EE--E---ECCCCcE-----EEEE--cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccc
Confidence 22 2 2222221 1110 01222 356766666666667789999999999877654443 334666
Q ss_pred EEEcC--CEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhh--ccceeEE-EecCCceeEEEcccccce
Q 020740 239 IKISP--GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ--FNEKLLV-KQENENLQILDVRISLFL 313 (322)
Q Consensus 239 IkIS~--Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~--f~EkLLI-KQE~~~LqI~Dl~~~~~~ 313 (322)
+.++| +.+|+.-.... -++|+++.+|+.+..+.. +...|--+.- -++++|+ =-++..++|||+.+.++.
T Consensus 232 v~~sp~~~~~la~g~~d~---~i~~wd~~~~~~~~~~~~---~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~ 305 (357)
T 4g56_B 232 VTWHPEKDDTFACGDETG---NVSLVNIKNPDSAQTSAV---HSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF 305 (357)
T ss_dssp EEECTTSTTEEEEEESSS---CEEEEESSCGGGCEEECC---CSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred hhhhhcccceEEEeeccc---ceeEEECCCCcEeEEEec---cceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence 77764 44444432222 268899999998887652 2344433321 2445554 568899999999988765
Q ss_pred e
Q 020740 314 P 314 (322)
Q Consensus 314 ~ 314 (322)
.
T Consensus 306 ~ 306 (357)
T 4g56_B 306 R 306 (357)
T ss_dssp E
T ss_pred E
Confidence 3
No 28
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=97.35 E-value=0.018 Score=50.41 Aligned_cols=200 Identities=17% Similarity=0.148 Sum_probs=124.1
Q ss_pred ceeEEeec--cchhhhh-hccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCc--eeeeeeee
Q 020740 97 KIIEIVAA--RDIVFAL-AQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFS--SLRCRSTR 171 (322)
Q Consensus 97 ~V~EIv~a--~diI~aL-~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS--~LkCr~~~ 171 (322)
.+..+... ...+++. ...|...+||..+++.+..+.... -+.++-++..+..|++.+.. .+... .=..+..
T Consensus 213 ~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~-~~~~~~~dg~i~~~- 288 (433)
T 3bws_A 213 WSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG--LPRGLLLSKDGKELYIAQFS-ASNQESGGGRLGIY- 288 (433)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS--EEEEEEECTTSSEEEEEEEE-SCTTCSCCEEEEEE-
T ss_pred CeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC--CceEEEEcCCCCEEEEEECC-CCccccCCCeEEEE-
Confidence 44444444 2334333 367888999999998888877643 37888888777766665432 21111 0012222
Q ss_pred hhhhHhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec-ccceeeEEEcC-CEEEEE
Q 020740 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISP-GIMLLI 249 (322)
Q Consensus 172 ~e~i~~gk~~~g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs-de~VqEIkIS~-Gimll~ 249 (322)
++..|++ +-....-..|--+.|+.....+++-...++..++||+.+.+.+..+. ...+..+.++| |-.|++
T Consensus 289 --d~~~~~~-----~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~ 361 (433)
T 3bws_A 289 --SMDKEKL-----IDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYV 361 (433)
T ss_dssp --ETTTTEE-----EEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEE
T ss_pred --ECCCCcE-----EeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEE
Confidence 2222221 11111122556678877666777777889999999999998877775 35678888884 545556
Q ss_pred EecCCCee------------EEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEe-cCCceeEEEccc
Q 020740 250 FTKASGHV------------PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRI 309 (322)
Q Consensus 250 ~q~~~~~i------------PlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQ-E~~~LqI~Dl~~ 309 (322)
.....+.+ -+.++++.+|+.+..+..- ..-..+.|- .-+.+|++-- .+..+.+||+.+
T Consensus 362 ~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s-~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 362 SCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVS-PDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp EECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEEC-TTSCEEEEEETTTTEEEEEEETT
T ss_pred EecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEc-CCCCEEEEEECCCCeEEEEEecC
Confidence 55555555 7899999999998877631 111223332 2255677664 589999999864
No 29
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=97.35 E-value=0.01 Score=49.66 Aligned_cols=202 Identities=15% Similarity=0.151 Sum_probs=118.1
Q ss_pred cccceeEEeecc-----chhhhhhccccceeeeccccc-EEEEecCCCCceEEEEee------ecCCCeEEEEEeEecCC
Q 020740 94 KRSKIIEIVAAR-----DIVFALAQSGVCAAFCRETNQ-RICFLNVTADEVIRSLFY------NKNNDSLITVSVYASDN 161 (322)
Q Consensus 94 kRS~V~EIv~a~-----diI~aL~~sG~c~af~r~tn~-~iC~lN~s~dEvIrSiFy------Nk~NdSlItvSvy~sd~ 161 (322)
...+|.-+-+.. .++++-...|....||..+++ .+..+. .+...|.++-+ +.+...|++.| .|.
T Consensus 64 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~~~---~d~ 139 (357)
T 3i2n_A 64 KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGS---RDG 139 (357)
T ss_dssp ESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEEC-CCSSCEEEEEEESGGGCC-CCCEEEEEE---TTS
T ss_pred ccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEE-ecccceEEEeeccccccCCCccEEEEEe---CCC
Confidence 345666666653 567777788999999999988 666666 45556777743 34455555433 222
Q ss_pred CceeeeeeeehhhhHhCCCCCCCcceeeccc---CCCCeEEec---CCCceEEEEecCCCeEEEEeccCcEEEEEec-cc
Q 020740 162 FSSLRCRSTRIEYIRRGKPDAGFALFESESL---KWPGFVEFD---DVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DK 234 (322)
Q Consensus 162 fS~LkCr~~~~e~i~~gk~~~g~~LFe~~~L---~~PgFVEFD---dvNgkilty~aq~~~YrVfdlknYs~LYsIs-de 234 (322)
.++ .. +++.++. ....+....- ...--+.|+ ..+++.++....++..++||+++-+++.... ..
T Consensus 140 --~i~--vw---d~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 210 (357)
T 3i2n_A 140 --TVK--VW---DPRQKDD--PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKN 210 (357)
T ss_dssp --CEE--EE---CTTSCSS--CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred --eEE--EE---eCCCCCC--cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCC
Confidence 122 22 2222220 0001110000 000112321 2467788888889999999999999766654 46
Q ss_pred ceeeEEEcC----CEEEEEEecCCCeeEEEEEEeecCceeeeeeec--cccCCc---chhhhhccceeEEEecCCceeEE
Q 020740 235 NVQEIKISP----GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL--LHRNKK---VDFIEQFNEKLLVKQENENLQIL 305 (322)
Q Consensus 235 ~VqEIkIS~----Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~--L~~sk~---iqFiE~f~EkLLIKQE~~~LqI~ 305 (322)
.+..+.++| |-.++.-.. .+ -++|+++.+++.+..+... -.+... +.|-..-...|+.=-++..+++|
T Consensus 211 ~v~~~~~~~~~~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iw 287 (357)
T 3i2n_A 211 GVCSLEFDRKDISMNKLVATSL-EG--KFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLW 287 (357)
T ss_dssp CEEEEEESCSSSSCCEEEEEES-TT--EEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEE
T ss_pred ceEEEEcCCCCCCCCEEEEECC-CC--eEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEe
Confidence 788899985 555555432 33 3678999998887765411 122333 33332222267777789999999
Q ss_pred Eccccc
Q 020740 306 DVRISL 311 (322)
Q Consensus 306 Dl~~~~ 311 (322)
|+.+..
T Consensus 288 d~~~~~ 293 (357)
T 3i2n_A 288 KYEYPI 293 (357)
T ss_dssp EEECCS
T ss_pred ecCCCc
Confidence 998654
No 30
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.013 Score=50.50 Aligned_cols=206 Identities=11% Similarity=0.169 Sum_probs=125.4
Q ss_pred cccceeEEeec--cchhhhhhccccceeeeccc----ccEEEEecCCCCceEEEEeeecC-CCeEEEEEeEecCCCceee
Q 020740 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRET----NQRICFLNVTADEVIRSLFYNKN-NDSLITVSVYASDNFSSLR 166 (322)
Q Consensus 94 kRS~V~EIv~a--~diI~aL~~sG~c~af~r~t----n~~iC~lN~s~dEvIrSiFyNk~-NdSlItvSvy~sd~fS~Lk 166 (322)
...+|..+-.. ..++++-...|....||..+ .+.+..+.. +..-|.++-++.. +.-|++.| .|. .
T Consensus 66 ~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~~---~dg--~-- 137 (416)
T 2pm9_A 66 VDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSN-HSSSVKTVKFNAKQDNVLASGG---NNG--E-- 137 (416)
T ss_dssp CSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCC-SSSCCCEEEECSSSTTBEEEEC---SSS--C--
T ss_pred cCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccC-CccceEEEEEcCCCCCEEEEEc---CCC--e--
Confidence 34567776665 33566666789999999987 346666654 5556778888876 44444422 222 1
Q ss_pred eeeeehhhhHhCCCCC-CCcceee----cccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc--------
Q 020740 167 CRSTRIEYIRRGKPDA-GFALFES----ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-------- 233 (322)
Q Consensus 167 Cr~~~~e~i~~gk~~~-g~~LFe~----~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsd-------- 233 (322)
+.+=++..++... ....+.. ..-...--+.|...++..++....++..++||+++-+.+..+..
T Consensus 138 ---v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 214 (416)
T 2pm9_A 138 ---IFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIK 214 (416)
T ss_dssp ---EEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCC
T ss_pred ---EEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccC
Confidence 2222333333100 0011111 11122335778877678888778899999999999999888874
Q ss_pred cceeeEEEcCC--EEEEEEecCCCeeEEEEEEeecC-ceeeeeeeccccCCcchhhh---hccceeEEEecCCceeEEEc
Q 020740 234 KNVQEIKISPG--IMLLIFTKASGHVPLKILSIEDG-TVLKSFNHLLHRNKKVDFIE---QFNEKLLVKQENENLQILDV 307 (322)
Q Consensus 234 e~VqEIkIS~G--imll~~q~~~~~iPlkIlsIedG-~~l~~f~~~L~~sk~iqFiE---~f~EkLLIKQE~~~LqI~Dl 307 (322)
..+..+.++|. .+++.-....+.--++++++.++ +++..+.. .+...+.-+. .-+..|+.=-++..+++||+
T Consensus 215 ~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~ 292 (416)
T 2pm9_A 215 QQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQ--GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNP 292 (416)
T ss_dssp CCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCS--CCSSCEEEEEECSSCSSCEEEEESSSEEEEECS
T ss_pred CceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeec--CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeC
Confidence 56889999974 34444443332224688999987 45544430 1233333232 24566777778999999999
Q ss_pred ccccc
Q 020740 308 RISLF 312 (322)
Q Consensus 308 ~~~~~ 312 (322)
.+.+.
T Consensus 293 ~~~~~ 297 (416)
T 2pm9_A 293 ESAEQ 297 (416)
T ss_dssp SSCCE
T ss_pred CCCcc
Confidence 88654
No 31
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=97.33 E-value=0.011 Score=52.01 Aligned_cols=186 Identities=13% Similarity=0.194 Sum_probs=110.6
Q ss_pred hccccceeeecccccE----EEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCC--Cc
Q 020740 112 AQSGVCAAFCRETNQR----ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG--FA 185 (322)
Q Consensus 112 ~~sG~c~af~r~tn~~----iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g--~~ 185 (322)
...|...+|+..+... +..+ ..+..-|.++=++..++.++.+. ..|. .++.-.+ ..|+.... .+
T Consensus 54 ~~~g~i~v~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~p~~~~~l~s~--s~dg--~v~vw~~-----~~~~~~~~~~~~ 123 (402)
T 2aq5_A 54 SGGGAFLVLPLGKTGRVDKNVPLV-CGHTAPVLDIAWCPHNDNVIASG--SEDC--TVMVWEI-----PDGGLVLPLREP 123 (402)
T ss_dssp SSSCCEEEEETTCCEECCTTCCCB-CCCSSCEEEEEECTTCTTEEEEE--ETTS--EEEEEEC-----CTTCCSSCBCSC
T ss_pred cCCCEEEEEECccCCCCCCCCceE-ecCCCCEEEEEeCCCCCCEEEEE--eCCC--eEEEEEc-----cCCCCccccCCc
Confidence 3457777887644322 1222 24566788899988444444421 2232 3333332 22222100 12
Q ss_pred ceee-cccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEe----cccceeeEEEc-CCEEEEEEecCCCeeEE
Q 020740 186 LFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI----SDKNVQEIKIS-PGIMLLIFTKASGHVPL 259 (322)
Q Consensus 186 LFe~-~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsI----sde~VqEIkIS-~Gimll~~q~~~~~iPl 259 (322)
+..- ..-...--+.|......+++-...|+..++||+.+-+.+..+ ....|..+.++ +|-+|+.--.. + -+
T Consensus 124 ~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-~--~i 200 (402)
T 2aq5_A 124 VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD-K--RV 200 (402)
T ss_dssp SEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT-S--EE
T ss_pred eEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC-C--cE
Confidence 2111 111223456787766567777778999999999999999999 45678899998 45454443322 2 37
Q ss_pred EEEEeecCceeeeeeeccccC---CcchhhhhccceeEEE---ecCCceeEEEcccccc
Q 020740 260 KILSIEDGTVLKSFNHLLHRN---KKVDFIEQFNEKLLVK---QENENLQILDVRISLF 312 (322)
Q Consensus 260 kIlsIedG~~l~~f~~~L~~s---k~iqFiE~f~EkLLIK---QE~~~LqI~Dl~~~~~ 312 (322)
+|+++.+|+.+..+.. .|.. ..+.|... +..|..= ..+..+++||+.+.+.
T Consensus 201 ~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~l~~g~~~~~d~~i~iwd~~~~~~ 257 (402)
T 2aq5_A 201 RVIEPRKGTVVAEKDR-PHEGTRPVHAVFVSE-GKILTTGFSRMSERQVALWDTKHLEE 257 (402)
T ss_dssp EEEETTTTEEEEEEEC-SSCSSSCCEEEECST-TEEEEEEECTTCCEEEEEEETTBCSS
T ss_pred EEEeCCCCceeeeecc-CCCCCcceEEEEcCC-CcEEEEeccCCCCceEEEEcCccccC
Confidence 8999999999988731 2322 33455532 3444444 5889999999998653
No 32
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.33 E-value=0.049 Score=48.15 Aligned_cols=184 Identities=10% Similarity=0.094 Sum_probs=116.7
Q ss_pred chhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCc
Q 020740 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185 (322)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~ 185 (322)
+.+++.+..|....||..+++....+...+...|.++-++.+.+.|++.+ .|. .++.-. +..|+ .
T Consensus 104 ~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~---~dg--~i~iwd-----~~~~~-----~ 168 (401)
T 4aez_A 104 LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGL---GNG--LVDIYD-----VESQT-----K 168 (401)
T ss_dssp TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEE---TTS--CEEEEE-----TTTCC-----E
T ss_pred CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEEC---CCC--eEEEEE-----CcCCe-----E
Confidence 44566678899999999999999999988889999999998666655533 222 222222 22222 1
Q ss_pred ceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccC-cEEEEEe--cccceeeEEEcC-CEEEEEEecCCCeeE
Q 020740 186 LFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKN-YTMLYSI--SDKNVQEIKISP-GIMLLIFTKASGHVP 258 (322)
Q Consensus 186 LFe~~~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlkn-Ys~LYsI--sde~VqEIkIS~-Gimll~~q~~~~~iP 258 (322)
+.+- -.|.+ -+.| ++..++....++..++||++. -..+..+ ....|..+.++| |-+++.--..+ -
T Consensus 169 ~~~~--~~~~~~v~~~~~---~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~---~ 240 (401)
T 4aez_A 169 LRTM--AGHQARVGCLSW---NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDN---V 240 (401)
T ss_dssp EEEE--CCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS---C
T ss_pred EEEe--cCCCCceEEEEE---CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC---e
Confidence 1110 01222 2344 467888888999999999984 3333333 456788888884 44444433322 3
Q ss_pred EEEEEeecCceeeeeeeccccCCcchhhhhccceeEEE---ecCCceeEEEcccccce
Q 020740 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK---QENENLQILDVRISLFL 313 (322)
Q Consensus 259 lkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIK---QE~~~LqI~Dl~~~~~~ 313 (322)
++|+++.+++.+..+...-..-..+.|- ..+.++++- ..+..+++||+.+.+.+
T Consensus 241 v~iwd~~~~~~~~~~~~~~~~v~~~~~~-p~~~~ll~~~~gs~d~~i~i~d~~~~~~~ 297 (401)
T 4aez_A 241 VQIWDARSSIPKFTKTNHNAAVKAVAWC-PWQSNLLATGGGTMDKQIHFWNAATGARV 297 (401)
T ss_dssp EEEEETTCSSEEEEECCCSSCCCEEEEC-TTSTTEEEEECCTTTCEEEEEETTTCCEE
T ss_pred EEEccCCCCCccEEecCCcceEEEEEEC-CCCCCEEEEecCCCCCEEEEEECCCCCEE
Confidence 6899999999888765211122233332 235567773 36899999999886643
No 33
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=97.30 E-value=0.038 Score=50.08 Aligned_cols=198 Identities=14% Similarity=0.129 Sum_probs=124.8
Q ss_pred ccc-eeEEeecc----chhhhhhccccceeeecccc--------cEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCC
Q 020740 95 RSK-IIEIVAAR----DIVFALAQSGVCAAFCRETN--------QRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDN 161 (322)
Q Consensus 95 RS~-V~EIv~a~----diI~aL~~sG~c~af~r~tn--------~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~ 161 (322)
... |..+.... .+++.-...|....||..++ +.+-.+.. +..-|.++-++.....|++.+. ..+.
T Consensus 63 ~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~-~~~~ 140 (615)
T 1pgu_A 63 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQV-LAGPISDISWDFEGRRLCVVGE-GRDN 140 (615)
T ss_dssp TTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEEC-CSSCEEEEEECTTSSEEEEEEC-CSSC
T ss_pred CCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhc-ccccEEEEEEeCCCCEEEEecc-CCCC
Confidence 344 66665544 56776777899999999876 44445543 4567889999988877776541 1111
Q ss_pred CceeeeeeeehhhhHhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc--c--
Q 020740 162 FSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--K-- 234 (322)
Q Consensus 162 fS~LkCr~~~~e~i~~gk~~~g~~LFe~~~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsd--e-- 234 (322)
. ...+..+ .|+ ++.. ...|++ -+.|...+...++....++..++||+.+.+++..+.. .
T Consensus 141 ~--~~v~~~d-----~~~-----~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~ 206 (615)
T 1pgu_A 141 F--GVFISWD-----SGN-----SLGE--VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQG 206 (615)
T ss_dssp S--EEEEETT-----TCC-----EEEE--CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTT
T ss_pred c--cEEEEEE-----CCC-----ccee--eecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCC
Confidence 1 1122111 111 1111 011222 3567766554566667899999999999999998873 2
Q ss_pred -ceeeEEEcCC--EEEEEEecCCCeeEEEEEEeecCceeeeeee-ccccCC---cchhhhhccceeEEEecCCceeEEEc
Q 020740 235 -NVQEIKISPG--IMLLIFTKASGHVPLKILSIEDGTVLKSFNH-LLHRNK---KVDFIEQFNEKLLVKQENENLQILDV 307 (322)
Q Consensus 235 -~VqEIkIS~G--imll~~q~~~~~iPlkIlsIedG~~l~~f~~-~L~~sk---~iqFiE~f~EkLLIKQE~~~LqI~Dl 307 (322)
.|..+.++|. -.|+.-... + -+.++++.+|+.+..+.. ...+.. .+.|. -+..|+.--.+..+++||+
T Consensus 207 ~~v~~~~~~~~~~~~l~~~~~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~ 281 (615)
T 1pgu_A 207 SFVRDVEFSPDSGEFVITVGSD-R--KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDV 281 (615)
T ss_dssp CCEEEEEECSTTCCEEEEEETT-C--CEEEEETTTCCEEEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEET
T ss_pred ceEEEEEECCCCCCEEEEEeCC-C--eEEEEECCCCCEeEEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEEC
Confidence 5888999865 444443332 2 368899999999987721 001233 34555 5667777888999999999
Q ss_pred ccccce
Q 020740 308 RISLFL 313 (322)
Q Consensus 308 ~~~~~~ 313 (322)
.+.+..
T Consensus 282 ~~~~~~ 287 (615)
T 1pgu_A 282 TTSKCV 287 (615)
T ss_dssp TTTEEE
T ss_pred CCCcEE
Confidence 976543
No 34
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=97.29 E-value=0.018 Score=48.65 Aligned_cols=195 Identities=7% Similarity=0.043 Sum_probs=118.4
Q ss_pred ccceeEEeec--cchhhhhhccccceeeecccccEEEEec-CCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeee
Q 020740 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLN-VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (322)
Q Consensus 95 RS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~lN-~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~ 171 (322)
...|..+-.. .++++.-...|....||..+++..+.+. .....-|.++-++.....|++.+ .|. .++...+.
T Consensus 52 ~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~--~v~i~d~~ 126 (372)
T 1k8k_C 52 NGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS---GSR--VISICYFE 126 (372)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE---TTS--SEEEEEEE
T ss_pred CCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEe---CCC--EEEEEEec
Confidence 3455555554 4466666778999999999998776543 55677899999998776666643 222 23322221
Q ss_pred hhhhHhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEecc------------------CcEEEEE
Q 020740 172 IEYIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLK------------------NYTMLYS 230 (322)
Q Consensus 172 ~e~i~~gk~~~g~~LFe~~~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlk------------------nYs~LYs 230 (322)
.++ ...+.......|.+ -+.|.. +++.++....++..++||++ .-.++..
T Consensus 127 -----~~~---~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (372)
T 1k8k_C 127 -----QEN---DWWVCKHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE 197 (372)
T ss_dssp -----TTT---TEEEEEEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE
T ss_pred -----CCC---cceeeeeeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEe
Confidence 111 00011111111222 345665 55666667789999999953 5567777
Q ss_pred ec--ccceeeEEEcCC-EEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhhc-cceeEEEecCCceeEEE
Q 020740 231 IS--DKNVQEIKISPG-IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF-NEKLLVKQENENLQILD 306 (322)
Q Consensus 231 Is--de~VqEIkIS~G-imll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f-~EkLLIKQE~~~LqI~D 306 (322)
+. ...+..+.++|. -+|+.-- ..+. ++++++.+|+.+..+.. | ..++.-+.-. ...+|+=-.+..+.+||
T Consensus 198 ~~~~~~~v~~~~~~~~~~~l~~~~-~d~~--i~i~d~~~~~~~~~~~~--~-~~~v~~~~~~~~~~~l~~~~d~~i~i~~ 271 (372)
T 1k8k_C 198 SSSSCGWVHGVCFSANGSRVAWVS-HDST--VCLADADKKMAVATLAS--E-TLPLLAVTFITESSLVAAGHDCFPVLFT 271 (372)
T ss_dssp CCCCSSCEEEEEECSSSSEEEEEE-TTTE--EEEEEGGGTTEEEEEEC--S-SCCEEEEEEEETTEEEEEETTSSCEEEE
T ss_pred cCCCCCeEEEEEECCCCCEEEEEe-CCCE--EEEEECCCCceeEEEcc--C-CCCeEEEEEecCCCEEEEEeCCeEEEEE
Confidence 75 446888888753 3434333 2333 78999999999988762 2 2233222221 23455555999999999
Q ss_pred ccc
Q 020740 307 VRI 309 (322)
Q Consensus 307 l~~ 309 (322)
+.+
T Consensus 272 ~~~ 274 (372)
T 1k8k_C 272 YDS 274 (372)
T ss_dssp EET
T ss_pred ccC
Confidence 988
No 35
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.23 E-value=0.067 Score=46.46 Aligned_cols=196 Identities=14% Similarity=0.272 Sum_probs=119.5
Q ss_pred cceeEEeeccc--hhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehh
Q 020740 96 SKIIEIVAARD--IVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (322)
Q Consensus 96 S~V~EIv~a~d--iI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e 173 (322)
.+|..+-...| +++.-...|....||..+++.+..+.. +...|.++-++.....|++.| .|. .++. -+
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~s~~---~d~--~v~i--w~-- 125 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL-RSSWVMTCAYAPSGNYVACGG---LDN--ICSI--YN-- 125 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEEC-SSSCEEEEEECTTSSEEEEEE---TTC--EEEE--EE--
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeec-CCccEEEEEECCCCCEEEEEe---CCC--eEEE--EE--
Confidence 45555555433 666677789999999999998888765 445577788887766665533 222 2222 22
Q ss_pred hhHhCCCCCCCcceeecccCCCCeE---EecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcCCEEEE
Q 020740 174 YIRRGKPDAGFALFESESLKWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGIMLL 248 (322)
Q Consensus 174 ~i~~gk~~~g~~LFe~~~L~~PgFV---EFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~Gimll 248 (322)
+..++ +..-.....-.|.+.| .|.+ ++++++ ...|+..++||+.+-+.+..+. ...|..+.++|.--++
T Consensus 126 -~~~~~---~~~~~~~~~~~h~~~v~~~~~~~-~~~l~s-~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l 199 (340)
T 1got_B 126 -LKTRE---GNVRVSRELAGHTGYLSCCRFLD-DNQIVT-SSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLF 199 (340)
T ss_dssp -TTTCS---BSCEEEEEEECCSSCEEEEEEEE-TTEEEE-EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred -CccCC---CcceeEEEecCCCccEEEEEECC-CCcEEE-EECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEE
Confidence 11111 1111112222345544 3433 345555 4679999999999999888875 3467888887543222
Q ss_pred EEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEEcccccc
Q 020740 249 IFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDVRISLF 312 (322)
Q Consensus 249 ~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~~ 312 (322)
+.-...+ -++|.++.+|+.+..+.. | ..+|.-+. .-+.+|+.=-.+..+++||+++.+.
T Consensus 200 ~sg~~d~--~v~~wd~~~~~~~~~~~~--h-~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~ 260 (340)
T 1got_B 200 VSGACDA--SAKLWDVREGMCRQTFTG--H-ESDINAICFFPNGNAFATGSDDATCRLFDLRADQE 260 (340)
T ss_dssp EEEETTS--CEEEEETTTCSEEEEECC--C-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred EEEeCCC--cEEEEECCCCeeEEEEcC--C-cCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcE
Confidence 2222233 368899999998887652 1 33332222 1356777778999999999987653
No 36
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=97.23 E-value=0.044 Score=47.65 Aligned_cols=175 Identities=16% Similarity=0.159 Sum_probs=108.3
Q ss_pred hhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcc
Q 020740 107 IVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFAL 186 (322)
Q Consensus 107 iI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~L 186 (322)
.++.-...|....||..+++.+..+.. +..-|.++-++.+..-+++.| .|. .++. - +++.|+. +
T Consensus 156 ~l~s~s~d~~i~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sg~---~d~--~v~~--w---d~~~~~~-----~ 219 (340)
T 1got_B 156 QIVTSSGDTTCALWDIETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGA---CDA--SAKL--W---DVREGMC-----R 219 (340)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEE---TTS--CEEE--E---ETTTCSE-----E
T ss_pred cEEEEECCCcEEEEECCCCcEEEEEcC-CCCceEEEEECCCCCEEEEEe---CCC--cEEE--E---ECCCCee-----E
Confidence 355556678899999999999888865 444577888887666555433 222 2222 2 2233321 1
Q ss_pred eeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccc----eeeEEEcC-CEEEEEEecCCCeeE
Q 020740 187 FESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN----VQEIKISP-GIMLLIFTKASGHVP 258 (322)
Q Consensus 187 Fe~~~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~----VqEIkIS~-Gimll~~q~~~~~iP 258 (322)
.. --.|++ -+.|.. +|+.++-...|+..++||+++-..+..+..++ |..+.++| |-+|+.-- ..+ -
T Consensus 220 ~~--~~~h~~~v~~v~~~p-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-~d~--~ 293 (340)
T 1got_B 220 QT--FTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY-DDF--N 293 (340)
T ss_dssp EE--ECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE-TTS--E
T ss_pred EE--EcCCcCCEEEEEEcC-CCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC-CCC--e
Confidence 11 011222 345665 56667777789999999999999888877553 67777774 44433332 223 3
Q ss_pred EEEEEeecCceeeeeeeccccCCcchhhhh--ccceeEEEecCCceeEEE
Q 020740 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILD 306 (322)
Q Consensus 259 lkIlsIedG~~l~~f~~~L~~sk~iqFiE~--f~EkLLIKQE~~~LqI~D 306 (322)
++|.++.+++.+..+. .+..+|.-+.- -+..|.-=-.|..++|||
T Consensus 294 i~vwd~~~~~~~~~~~---~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 294 CNVWDALKADRAGVLA---GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEETTTCCEEEEEE---CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEcccCcEeeEee---cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 6889999999887665 22344332222 233556666888999997
No 37
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=97.23 E-value=0.012 Score=53.24 Aligned_cols=160 Identities=13% Similarity=0.161 Sum_probs=100.8
Q ss_pred ccceeEEeeccc---hhhhhhccccceeeecccccEEEEecCCCCc--eEEEEeeecC-CCeEEEEEeEecCCCceeeee
Q 020740 95 RSKIIEIVAARD---IVFALAQSGVCAAFCRETNQRICFLNVTADE--VIRSLFYNKN-NDSLITVSVYASDNFSSLRCR 168 (322)
Q Consensus 95 RS~V~EIv~a~d---iI~aL~~sG~c~af~r~tn~~iC~lN~s~dE--vIrSiFyNk~-NdSlItvSvy~sd~fS~LkCr 168 (322)
...|..+.+..+ .++.-...|....||..+++.+..+....+. -|.++-++.+ .+.|++.+ .|. .++.-
T Consensus 160 ~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg--~i~vw 234 (615)
T 1pgu_A 160 SQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVG---SDR--KISCF 234 (615)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEE---TTC--CEEEE
T ss_pred CccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEe---CCC--eEEEE
Confidence 344555555543 6777778899999999999999888754431 6888999987 55555533 222 23222
Q ss_pred eeehhhhHhCCCCCCCcceeeccc--CCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEeccc------cee
Q 020740 169 STRIEYIRRGKPDAGFALFESESL--KWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK------NVQ 237 (322)
Q Consensus 169 ~~~~e~i~~gk~~~g~~LFe~~~L--~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde------~Vq 237 (322)
+++.|+. +..-... .+.+ -+.|. +++.++....++..++||+.+.+++..+... .+.
T Consensus 235 -----d~~~~~~-----~~~~~~~~~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~ 302 (615)
T 1pgu_A 235 -----DGKSGEF-----LKYIEDDQEPVQGGIFALSWL--DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQV 302 (615)
T ss_dssp -----ETTTCCE-----EEECCBTTBCCCSCEEEEEES--SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEE
T ss_pred -----ECCCCCE-----eEEecccccccCCceEEEEEc--CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCcee
Confidence 2223321 1111000 2333 45777 7777777788999999999999988887753 344
Q ss_pred eEEEcCCEEEEEEecCCCeeEEEEEEeecCceeeeee
Q 020740 238 EIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (322)
Q Consensus 238 EIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~ 274 (322)
.+..++|-.++.-.... -+.++++.+|+.+..+.
T Consensus 303 ~~~~~~~~~l~~~~~~g---~i~~~d~~~~~~~~~~~ 336 (615)
T 1pgu_A 303 GVVATGNGRIISLSLDG---TLNFYELGHDEVLKTIS 336 (615)
T ss_dssp EEEEEETTEEEEEETTS---CEEEEETTEEEEEEEEC
T ss_pred EEEeCCCCeEEEEECCC---CEEEEECCCCcEEEEEe
Confidence 55554555544444333 25778888888777664
No 38
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.22 E-value=0.025 Score=50.62 Aligned_cols=189 Identities=12% Similarity=0.171 Sum_probs=114.1
Q ss_pred eeEEeeccchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHh
Q 020740 98 IIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR 177 (322)
Q Consensus 98 V~EIv~a~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~ 177 (322)
|.-+-.-.+.+++-...|...+||..|++.+..+.... .-|.++-+ .++.|++.| .|. .++.-. +..
T Consensus 136 v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~--~~~~l~sg~---~dg--~i~vwd-----~~~ 202 (435)
T 1p22_A 136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHT-GSVLCLQY--DERVIITGS---SDS--TVRVWD-----VNT 202 (435)
T ss_dssp EEEEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCS-SCEEEEEC--CSSEEEEEE---TTS--CEEEEE-----SSS
T ss_pred EEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCC-CcEEEEEE--CCCEEEEEc---CCC--eEEEEE-----CCC
Confidence 44444456677777889999999999999998887544 45566766 334444422 232 232222 222
Q ss_pred CCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEE-----EEecccceeeEEEcCCEEEEEEec
Q 020740 178 GKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-----YSISDKNVQEIKISPGIMLLIFTK 252 (322)
Q Consensus 178 gk~~~g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~L-----YsIsde~VqEIkIS~Gimll~~q~ 252 (322)
|+. +.. .-.|.+-|.-=..++..++....++..++||+.+-+.+ +.-....|..+...+..++ .--.
T Consensus 203 ~~~-----~~~--~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-s~~~ 274 (435)
T 1p22_A 203 GEM-----LNT--LIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIV-SASG 274 (435)
T ss_dssp CCE-----EEE--ECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEE-EEET
T ss_pred CcE-----EEE--EcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeCCCEEE-EEeC
Confidence 221 111 01223322221223445666678999999999876633 2223456777777555543 3222
Q ss_pred CCCeeEEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEEcccccce
Q 020740 253 ASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 253 ~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
.+. ++++++.+|+.+..+.. +...+.-+..-+..|+.=-.+..+++||+.+.+.+
T Consensus 275 -dg~--i~vwd~~~~~~~~~~~~---~~~~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~ 329 (435)
T 1p22_A 275 -DRT--IKVWNTSTCEFVRTLNG---HKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACL 329 (435)
T ss_dssp -TSE--EEEEETTTCCEEEEEEC---CSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEE
T ss_pred -CCe--EEEEECCcCcEEEEEcC---CCCcEEEEEeCCCEEEEEeCCCeEEEEECCCCCEE
Confidence 232 58999999999988762 24444444445677888889999999999986543
No 39
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.21 E-value=0.023 Score=54.13 Aligned_cols=194 Identities=13% Similarity=0.161 Sum_probs=127.7
Q ss_pred cceeEEeec--cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehh
Q 020740 96 SKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (322)
Q Consensus 96 S~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e 173 (322)
.+|.-+... ...+++-...|....||..+++.+..+.. +...|+++-++..+..|++.| ++ ..++.-.+
T Consensus 56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~----~d-g~i~vw~~--- 126 (814)
T 3mkq_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEA-HPDYIRSIAVHPTKPYVLSGS----DD-LTVKLWNW--- 126 (814)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSSEEEEEE----TT-SEEEEEEG---
T ss_pred CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEec-CCCCEEEEEEeCCCCEEEEEc----CC-CEEEEEEC---
Confidence 344444443 34566677789999999999999998865 455688899998887777644 22 22333222
Q ss_pred hhHhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc---cceeeEEEcC---C
Q 020740 174 YIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD---KNVQEIKISP---G 244 (322)
Q Consensus 174 ~i~~gk~~~g~~LFe~~~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsd---e~VqEIkIS~---G 244 (322)
..+. .+ ....-.|++ -+.|...+|..++....++..++||+.+-...+.+.. ..+.-+..+| |
T Consensus 127 --~~~~-----~~-~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 198 (814)
T 3mkq_A 127 --ENNW-----AL-EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDK 198 (814)
T ss_dssp --GGTS-----EE-EEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTC
T ss_pred --CCCc-----eE-EEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCC
Confidence 2211 01 111112333 4678777788888888999999999998887777654 5577777774 5
Q ss_pred EEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhh--ccceeEEEecCCceeEEEcccccc
Q 020740 245 IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVRISLF 312 (322)
Q Consensus 245 imll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~--f~EkLLIKQE~~~LqI~Dl~~~~~ 312 (322)
-.++.-.... -+.++++.+|+.+..+.. +...+..+.- -+..|+.--++..+++||+.+.+.
T Consensus 199 ~~l~~~~~dg---~i~~~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~ 262 (814)
T 3mkq_A 199 PYMITASDDL---TIKIWDYQTKSCVATLEG---HMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262 (814)
T ss_dssp CEEEEECTTS---EEEEEETTTTEEEEEEEC---CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSE
T ss_pred CEEEEEeCCC---EEEEEECCCCcEEEEEcC---CCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 5544443332 478899999998877652 2344443332 234677888899999999987554
No 40
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=97.17 E-value=0.012 Score=50.87 Aligned_cols=191 Identities=12% Similarity=0.078 Sum_probs=106.9
Q ss_pred chhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCc
Q 020740 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185 (322)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~ 185 (322)
.++++-...|....||. +++.+..+.. +..-|.++-++..+..++.+. ..|. .++. =+++.++. .+.+
T Consensus 176 ~~l~~~~~d~~i~i~d~-~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~--~~d~--~i~i-----wd~~~~~~-~~~~ 243 (383)
T 3ei3_B 176 QMLATGDSTGRLLLLGL-DGHEIFKEKL-HKAKVTHAEFNPRCDWLMATS--SVDA--TVKL-----WDLRNIKD-KNSY 243 (383)
T ss_dssp TEEEEEETTSEEEEEET-TSCEEEEEEC-SSSCEEEEEECSSCTTEEEEE--ETTS--EEEE-----EEGGGCCS-TTCE
T ss_pred CEEEEECCCCCEEEEEC-CCCEEEEecc-CCCcEEEEEECCCCCCEEEEE--eCCC--EEEE-----EeCCCCCc-ccce
Confidence 45555566688888887 5777766653 456788898988777444311 2232 2222 24444332 1222
Q ss_pred ceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccc------eeeEE--Ec--CCEEEEEEecCC-
Q 020740 186 LFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN------VQEIK--IS--PGIMLLIFTKAS- 254 (322)
Q Consensus 186 LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~------VqEIk--IS--~Gimll~~q~~~- 254 (322)
+-....-...--+.|+..+|+.++....++..++||+++.+.+..+.... ...++ .+ ..++.+.+.+..
T Consensus 244 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~ 323 (383)
T 3ei3_B 244 IAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQ 323 (383)
T ss_dssp EEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTT
T ss_pred EEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCcc
Confidence 22222222334568888788888888889999999999988655554211 12222 12 222322222111
Q ss_pred ----CeeEEEEEEeecCceeeeeeeccccCCcchhhhhc-cceeEEEecCCceeEEEccc
Q 020740 255 ----GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF-NEKLLVKQENENLQILDVRI 309 (322)
Q Consensus 255 ----~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f-~EkLLIKQE~~~LqI~Dl~~ 309 (322)
.-=-++|+++.+|+.+..+... +....+..+.-. ..++|+--.+..++|||+.+
T Consensus 324 ~s~s~d~~i~iwd~~~~~~~~~l~~~-~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~ 382 (383)
T 3ei3_B 324 LLLNDKRTIDIYDANSGGLVHQLRDP-NAAGIISLNKFSPTGDVLASGMGFNILIWNRED 382 (383)
T ss_dssp TCTTCCCCEEEEETTTCCEEEEECBT-TBCSCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred cccCCCCeEEEEecCCCceeeeecCC-CCCceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence 1123789999999998887621 123333321111 23344444689999999875
No 41
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=97.17 E-value=0.013 Score=49.80 Aligned_cols=201 Identities=12% Similarity=0.105 Sum_probs=117.0
Q ss_pred ccceeEEeecc---chhhhhhccccceeeecccccEEEEec------------CCCCceEEEEeeecCCCeEEEEEeEec
Q 020740 95 RSKIIEIVAAR---DIVFALAQSGVCAAFCRETNQRICFLN------------VTADEVIRSLFYNKNNDSLITVSVYAS 159 (322)
Q Consensus 95 RS~V~EIv~a~---diI~aL~~sG~c~af~r~tn~~iC~lN------------~s~dEvIrSiFyNk~NdSlItvSvy~s 159 (322)
..+|..+.... .+++.-...|....||..+++....+. ..+..-|.++-++..+..++.++ ..
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~--~~ 120 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS--SF 120 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE--ET
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE--eC
Confidence 45566665543 667777788999999999887766554 24677788888887454444421 12
Q ss_pred CCCceeeeeeeehhhhHhCCCCCCCcceeecccCCCCeEEecC--CCceEEEEecCCCeEEEEeccCcEEEEEec--ccc
Q 020740 160 DNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDD--VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKN 235 (322)
Q Consensus 160 d~fS~LkCr~~~~e~i~~gk~~~g~~LFe~~~L~~PgFVEFDd--vNgkilty~aq~~~YrVfdlknYs~LYsIs--de~ 235 (322)
|. .++.-.+ ..|+ ++..-..-....-+.|.. .++..++....++..++||+++-+.+..+. ...
T Consensus 121 d~--~i~iwd~-----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 188 (408)
T 4a11_B 121 DK--TLKVWDT-----NTLQ-----TADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQE 188 (408)
T ss_dssp TS--EEEEEET-----TTTE-----EEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSC
T ss_pred CC--eEEEeeC-----CCCc-----cceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCc
Confidence 22 3333322 2221 111111111112233433 356688888899999999999988777775 456
Q ss_pred eeeEEEcCCE--EEEEEecCCCeeEEEEEEeecCc-eeeeeee------------ccccCCcchhhhh--ccceeEEEec
Q 020740 236 VQEIKISPGI--MLLIFTKASGHVPLKILSIEDGT-VLKSFNH------------LLHRNKKVDFIEQ--FNEKLLVKQE 298 (322)
Q Consensus 236 VqEIkIS~Gi--mll~~q~~~~~iPlkIlsIedG~-~l~~f~~------------~L~~sk~iqFiE~--f~EkLLIKQE 298 (322)
|..+.++|.- +++.-.... -++++++.+++ .+..+.. .-.+...+.-+.- -+.+|+.--.
T Consensus 189 v~~~~~~~~~~~ll~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 265 (408)
T 4a11_B 189 ILAVSWSPRYDYILATASADS---RVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGT 265 (408)
T ss_dssp EEEEEECSSCTTEEEEEETTS---CEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEEECCCCCcEEEEEcCCC---cEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecC
Confidence 8888888653 333333222 26788888776 2222210 0011222221211 2456777778
Q ss_pred CCceeEEEcccccc
Q 020740 299 NENLQILDVRISLF 312 (322)
Q Consensus 299 ~~~LqI~Dl~~~~~ 312 (322)
+..+++||+.+.+.
T Consensus 266 dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 266 DNRMRLWNSSNGEN 279 (408)
T ss_dssp TSCEEEEETTTCCB
T ss_pred CCeEEEEECCCCcc
Confidence 99999999998664
No 42
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=97.17 E-value=0.019 Score=51.67 Aligned_cols=197 Identities=10% Similarity=0.158 Sum_probs=117.5
Q ss_pred cccceeEEeecc--chhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeee
Q 020740 94 KRSKIIEIVAAR--DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (322)
Q Consensus 94 kRS~V~EIv~a~--diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~ 171 (322)
-+.+|.-+.+.. .+++.-...|....||..|++.+..+.. +..-|.++=++....-|++.| .|. .++ .-+
T Consensus 107 h~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~-h~~~V~~v~~~~~~~~l~sgs---~D~--~i~--iwd 178 (410)
T 1vyh_C 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG-HTDSVQDISFDHSGKLLASCS---ADM--TIK--LWD 178 (410)
T ss_dssp CSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECC-CSSCEEEEEECTTSSEEEEEE---TTS--CCC--EEE
T ss_pred cCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEec-cCCcEEEEEEcCCCCEEEEEe---CCC--eEE--EEe
Confidence 456777777663 4666667789999999999999988875 445678888887766665543 222 222 221
Q ss_pred hhhhHhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcC-CE
Q 020740 172 IEYIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP-GI 245 (322)
Q Consensus 172 ~e~i~~gk~~~g~~LFe~~~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~-Gi 245 (322)
+ ..++. +-+ .-.|.+ -+.|... |..++-...|+..++||+.+-.++..+. ...|..+..++ |.
T Consensus 179 ~---~~~~~-----~~~--~~~h~~~V~~v~~~p~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~ 247 (410)
T 1vyh_C 179 F---QGFEC-----IRT--MHGHDHNVSSVSIMPN-GDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGT 247 (410)
T ss_dssp T---TSSCE-----EEC--CCCCSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred C---CCCce-----eEE--EcCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCC
Confidence 1 11111 100 011222 2456554 4445555679999999999988776664 34566677764 44
Q ss_pred EEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhh---------h----------ccceeEEEecCCceeEEE
Q 020740 246 MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE---------Q----------FNEKLLVKQENENLQILD 306 (322)
Q Consensus 246 mll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE---------~----------f~EkLLIKQE~~~LqI~D 306 (322)
+++.-.. .+ -++|.++.+++....+..--+.-.-+.|-. . -+..|+.=-.+..+++||
T Consensus 248 ~l~s~s~-D~--~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd 324 (410)
T 1vyh_C 248 LIASCSN-DQ--TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD 324 (410)
T ss_dssp EEEEEET-TS--CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEE
T ss_pred EEEEEcC-CC--eEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEE
Confidence 4333322 22 268889999988776531000001111111 0 144677777899999999
Q ss_pred cccccc
Q 020740 307 VRISLF 312 (322)
Q Consensus 307 l~~~~~ 312 (322)
+.+.+.
T Consensus 325 ~~~~~~ 330 (410)
T 1vyh_C 325 VSTGMC 330 (410)
T ss_dssp TTTTEE
T ss_pred CCCCce
Confidence 987653
No 43
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=97.16 E-value=0.066 Score=48.18 Aligned_cols=192 Identities=15% Similarity=0.202 Sum_probs=120.7
Q ss_pred cceeEEeec--cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehh
Q 020740 96 SKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (322)
Q Consensus 96 S~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e 173 (322)
..|..+-+. ..+++.-...|....||..+++.+..+.. +..-|.++-++.+.+.|++.| .|. .++.-
T Consensus 151 ~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~-h~~~V~~v~~~p~~~~l~s~s---~D~--~i~~w----- 219 (410)
T 1vyh_C 151 DSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHG-HDHNVSSVSIMPNGDHIVSAS---RDK--TIKMW----- 219 (410)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCC-CSSCEEEEEECSSSSEEEEEE---TTS--EEEEE-----
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcC-CCCCEEEEEEeCCCCEEEEEe---CCC--eEEEE-----
Confidence 456666554 34666666778999999998887777754 455678898988777776644 222 22222
Q ss_pred hhHhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc--cceeeEEEcC-----
Q 020740 174 YIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP----- 243 (322)
Q Consensus 174 ~i~~gk~~~g~~LFe~~~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsd--e~VqEIkIS~----- 243 (322)
+++.|+. +.+ --.|.+ -+.|.. +|+.++-...|+..++||+.+-+++..+.. ..|.-+.++|
T Consensus 220 d~~~~~~-----~~~--~~~h~~~v~~~~~~~-~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 291 (410)
T 1vyh_C 220 EVQTGYC-----VKT--FTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYS 291 (410)
T ss_dssp ETTTCCE-----EEE--EECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGG
T ss_pred ECCCCcE-----EEE--EeCCCccEEEEEECC-CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCccccc
Confidence 2233321 111 011222 234443 567777778899999999999888877742 3466666766
Q ss_pred ----------------CEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCc---chhhhhccceeEEEecCCceeE
Q 020740 244 ----------------GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKK---VDFIEQFNEKLLVKQENENLQI 304 (322)
Q Consensus 244 ----------------Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~---iqFiE~f~EkLLIKQE~~~LqI 304 (322)
|-+|+.--... -++|+++.+|+++..+.- | ... +.|- .-+.+|+.==++..+++
T Consensus 292 ~~~~~~~~~~~~~~~~g~~l~sgs~D~---~i~iwd~~~~~~~~~~~~--h-~~~v~~v~~~-~~g~~l~s~s~D~~i~v 364 (410)
T 1vyh_C 292 SISEATGSETKKSGKPGPFLLSGSRDK---TIKMWDVSTGMCLMTLVG--H-DNWVRGVLFH-SGGKFILSCADDKTLRV 364 (410)
T ss_dssp GGGGCCSCC-------CCEEEEEETTS---EEEEEETTTTEEEEEEEC--C-SSCEEEEEEC-SSSSCEEEEETTTEEEE
T ss_pred chhhhccccccccCCCCCEEEEEeCCC---eEEEEECCCCceEEEEEC--C-CCcEEEEEEc-CCCCEEEEEeCCCeEEE
Confidence 44444433322 278999999999887752 2 333 2321 23456777778999999
Q ss_pred EEcccccce
Q 020740 305 LDVRISLFL 313 (322)
Q Consensus 305 ~Dl~~~~~~ 313 (322)
||+.+.+.+
T Consensus 365 wd~~~~~~~ 373 (410)
T 1vyh_C 365 WDYKNKRCM 373 (410)
T ss_dssp ECCTTSCCC
T ss_pred EECCCCceE
Confidence 999886543
No 44
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=97.13 E-value=0.019 Score=50.45 Aligned_cols=201 Identities=14% Similarity=0.205 Sum_probs=122.0
Q ss_pred ccceeEEeecc---chhhhhhccccceeeecccccEEEEec-CCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeee
Q 020740 95 RSKIIEIVAAR---DIVFALAQSGVCAAFCRETNQRICFLN-VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRST 170 (322)
Q Consensus 95 RS~V~EIv~a~---diI~aL~~sG~c~af~r~tn~~iC~lN-~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~ 170 (322)
..+|..+-... .+++.-...|....||..+++.+..+. ..+...|.++=++.+...|++.| .|. .+ +..
T Consensus 131 ~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~d~--~i--~iw 203 (402)
T 2aq5_A 131 TKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC---RDK--RV--RVI 203 (402)
T ss_dssp SSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE---TTS--EE--EEE
T ss_pred CCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe---cCC--cE--EEE
Confidence 45666666553 367777788999999999999999886 56777889999998776666644 232 22 222
Q ss_pred ehhhhHhCCCCCCCcceee---cccCCCCeEEecCCCceEEEEe---cCCCeEEEEeccCcEE---EEEec-ccceeeEE
Q 020740 171 RIEYIRRGKPDAGFALFES---ESLKWPGFVEFDDVNGKVLTYS---AQDSIYKVFDLKNYTM---LYSIS-DKNVQEIK 240 (322)
Q Consensus 171 ~~e~i~~gk~~~g~~LFe~---~~L~~PgFVEFDdvNgkilty~---aq~~~YrVfdlknYs~---LYsIs-de~VqEIk 240 (322)
+++.|+. +.+- ..-..+--+.|.. +|++++.. ..++..++||+++.+. ++.+. ...+..+.
T Consensus 204 ---d~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 274 (402)
T 2aq5_A 204 ---EPRKGTV-----VAEKDRPHEGTRPVHAVFVS-EGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPF 274 (402)
T ss_dssp ---ETTTTEE-----EEEEECSSCSSSCCEEEECS-TTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEE
T ss_pred ---eCCCCce-----eeeeccCCCCCcceEEEEcC-CCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEE
Confidence 2222221 1111 1111244566764 67888776 6899999999998764 44442 34577777
Q ss_pred EcC-CEEEEEEecCCCeeEEEEEEeecCce-eeeeeecc--ccCCcchhhhhccceeEEEecCCceeEEEcccccceeee
Q 020740 241 ISP-GIMLLIFTKASGHVPLKILSIEDGTV-LKSFNHLL--HRNKKVDFIEQFNEKLLVKQENENLQILDVRISLFLPLQ 316 (322)
Q Consensus 241 IS~-Gimll~~q~~~~~iPlkIlsIedG~~-l~~f~~~L--~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~~~~ 316 (322)
++| |-+|++.-...+ -++++++.+++. +..+...- ..-..+.|.. ...+++ -.++.+++||+.+.++.++.
T Consensus 275 ~s~~~~~l~~~g~~dg--~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp--~~~~~~-s~~~~~~~~~l~~~~~~~i~ 349 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDS--SIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP--KRGLEV-NKCEIARFYKLHERKCEPIA 349 (402)
T ss_dssp EETTTTEEEEEETTCS--CEEEEEECSSTTCEEEEEEECCSSCCSEEEECC--GGGSCG-GGTEEEEEEEEETTEEEEEE
T ss_pred EcCCCCEEEEEEcCCC--eEEEEEecCCCcceEeecccccCCcccceEEec--ccccce-ecceeEEEEEcCCCcEEEEE
Confidence 774 344433333333 367899999985 44443211 1122333332 122223 36779999999998776664
No 45
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.091 Score=44.10 Aligned_cols=199 Identities=9% Similarity=0.096 Sum_probs=116.5
Q ss_pred cccceeEEeec----cchhhhhhccccceeeecccccEEE--EecCCCCceEEEEeeecC--CCeEEEEEeEecCCCcee
Q 020740 94 KRSKIIEIVAA----RDIVFALAQSGVCAAFCRETNQRIC--FLNVTADEVIRSLFYNKN--NDSLITVSVYASDNFSSL 165 (322)
Q Consensus 94 kRS~V~EIv~a----~diI~aL~~sG~c~af~r~tn~~iC--~lN~s~dEvIrSiFyNk~--NdSlItvSvy~sd~fS~L 165 (322)
....|..+... ..+++.-...|....||..+++..+ .+. .+..-|.++-++.. ...+++.+ .|. .+
T Consensus 54 h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~---~d~--~i 127 (379)
T 3jrp_A 54 HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPLLLVAS---SDG--KV 127 (379)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEE---TTS--EE
T ss_pred CCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeec-CCCcceEEEEeCCCCCCCEEEEec---CCC--cE
Confidence 34567777665 4577777788999999999998433 443 35567888888877 45555533 222 22
Q ss_pred eeeeeehhhhHhCCCCCCCcceeecccCCCCeEEecCC------------CceEEEEecCCCeEEEEeccCc----EEEE
Q 020740 166 RCRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDV------------NGKVLTYSAQDSIYKVFDLKNY----TMLY 229 (322)
Q Consensus 166 kCr~~~~e~i~~gk~~~g~~LFe~~~L~~PgFVEFDdv------------Ngkilty~aq~~~YrVfdlknY----s~LY 229 (322)
+.. +++.++..... .+. ..-...--+.|+.. ++..++....++..++||+++- .++.
T Consensus 128 ~v~-----d~~~~~~~~~~-~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 200 (379)
T 3jrp_A 128 SVV-----EFKENGTTSPI-IID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLES 200 (379)
T ss_dssp EEE-----ECCTTSCCCEE-EEE-CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEE
T ss_pred EEE-----ecCCCCceeeE-Eec-CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEE
Confidence 222 22222110000 000 00011123455554 7888888899999999999863 3444
Q ss_pred Eec--ccceeeEEEcC----CEEEEEEecCCCeeEEEEEEeecCceeeeeee--ccccCCcc---hhhhhccceeEEEec
Q 020740 230 SIS--DKNVQEIKISP----GIMLLIFTKASGHVPLKILSIEDGTVLKSFNH--LLHRNKKV---DFIEQFNEKLLVKQE 298 (322)
Q Consensus 230 sIs--de~VqEIkIS~----Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~--~L~~sk~i---qFiE~f~EkLLIKQE 298 (322)
.+. ...|..+.++| |-+|+.--... . ++|+++.+|+....... .......+ .|- .-+.+|+.=-.
T Consensus 201 ~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg-~--i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s-~~g~~l~~~~~ 276 (379)
T 3jrp_A 201 TLEGHSDWVRDVAWSPTVLLRSYLASVSQDR-T--CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-LSGNVLALSGG 276 (379)
T ss_dssp EECCCSSCEEEEEECCCCSSSEEEEEEETTS-C--EEEEEESSTTSCCEEEESSSSCCSSCEEEEEEC-SSSCCEEEEES
T ss_pred EEecccCcEeEEEECCCCCCCCeEEEEeCCC-E--EEEEeCCCCCccceeeeeccccCCCcEEEEEEc-CCCCEEEEecC
Confidence 443 56788999997 45555544333 3 58899998853222211 11122222 321 23556777778
Q ss_pred CCceeEEEccc
Q 020740 299 NENLQILDVRI 309 (322)
Q Consensus 299 ~~~LqI~Dl~~ 309 (322)
+..++|||+..
T Consensus 277 dg~i~iw~~~~ 287 (379)
T 3jrp_A 277 DNKVTLWKENL 287 (379)
T ss_dssp SSSEEEEEEEE
T ss_pred CCcEEEEeCCC
Confidence 99999999985
No 46
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.031 Score=47.56 Aligned_cols=180 Identities=14% Similarity=0.106 Sum_probs=115.2
Q ss_pred cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCC
Q 020740 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (322)
Q Consensus 105 ~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~ 184 (322)
+..+++....|....||..+++.+..+.. +..-|.++-++..+..|++.+ .|. .++... ++.++.
T Consensus 217 ~~~~~~~~~~g~i~~~d~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~---~d~--~i~i~d-----~~~~~~---- 281 (425)
T 1r5m_A 217 DDKFVIPGPKGAIFVYQITEKTPTGKLIG-HHGPISVLEFNDTNKLLLSAS---DDG--TLRIWH-----GGNGNS---- 281 (425)
T ss_dssp TTEEEEECGGGCEEEEETTCSSCSEEECC-CSSCEEEEEEETTTTEEEEEE---TTS--CEEEEC-----SSSBSC----
T ss_pred CCEEEEEcCCCeEEEEEcCCCceeeeecc-CCCceEEEEECCCCCEEEEEc---CCC--EEEEEE-----CCCCcc----
Confidence 45667777889999999999988887764 455678888888777666543 222 232222 222221
Q ss_pred cceeec-ccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcC-CEEEEEEecCCCeeEEE
Q 020740 185 ALFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLK 260 (322)
Q Consensus 185 ~LFe~~-~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~-Gimll~~q~~~~~iPlk 260 (322)
+..-. .-...--+.|...+ .++....++..++||+++.+.+..+. ...+..+.++| |-+|+.-... + -+.
T Consensus 282 -~~~~~~~~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g--~i~ 355 (425)
T 1r5m_A 282 -QNCFYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMD-G--QVN 355 (425)
T ss_dssp -SEEECCCSSCEEEEEEETTT--EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETT-S--CEE
T ss_pred -ceEecCCCccEEEEEECCCC--EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECC-C--eEE
Confidence 11110 01112345666644 55556779999999999999887776 46788899985 4454444333 2 367
Q ss_pred EEEeecCc--------------------eeeeeeeccccC----CcchhhhhccceeEEEecCCceeEEEcc
Q 020740 261 ILSIEDGT--------------------VLKSFNHLLHRN----KKVDFIEQFNEKLLVKQENENLQILDVR 308 (322)
Q Consensus 261 IlsIedG~--------------------~l~~f~~~L~~s----k~iqFiE~f~EkLLIKQE~~~LqI~Dl~ 308 (322)
|+++.+++ .+..+.. |.. ..+.|- .-+.+|++=-.+..+++||+.
T Consensus 356 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 356 VYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQS--SQDNDYIFDLSWN-CAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEECHHHHC--------------CEECCEEEEECC--TTCCCCEEEEEEC-TTSSEEEEEESSSCCEEEECC
T ss_pred EEECCCCccceeeeecccccccCcccchhhhhhcC--cccCCceEEEEcc-CCCceEEEEecCceEEEEeec
Confidence 89999998 6666652 322 234432 234577788899999999984
No 47
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.087 Score=43.89 Aligned_cols=199 Identities=13% Similarity=0.151 Sum_probs=114.8
Q ss_pred cccceeEEeec--cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeee
Q 020740 94 KRSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR 171 (322)
Q Consensus 94 kRS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~ 171 (322)
-..+|.-+... ..++++-...|....||..+++.+..+.. +..-|.++-++.+.+.|++.| .|. .++.-
T Consensus 31 h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~~---~dg--~i~iw--- 101 (369)
T 3zwl_B 31 HERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDG-HTGTIWSIDVDCFTKYCVTGS---ADY--SIKLW--- 101 (369)
T ss_dssp CSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEEE---TTT--EEEEE---
T ss_pred eeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhh-cCCcEEEEEEcCCCCEEEEEe---CCC--eEEEE---
Confidence 34556665554 23566667789999999999999998865 445678888888777666543 222 22222
Q ss_pred hhhhHhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCC-----CeEEEEeccCcEE---EEEeccc---------
Q 020740 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQD-----SIYKVFDLKNYTM---LYSISDK--------- 234 (322)
Q Consensus 172 ~e~i~~gk~~~g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~-----~~YrVfdlknYs~---LYsIsde--------- 234 (322)
++..|+ .+..-..-..+--+.|+. +|+.++....+ +..++||+.+... +...+.+
T Consensus 102 --d~~~~~-----~~~~~~~~~~v~~~~~~~-~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (369)
T 3zwl_B 102 --DVSNGQ-----CVATWKSPVPVKRVEFSP-CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHE 173 (369)
T ss_dssp --ETTTCC-----EEEEEECSSCEEEEEECT-TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCT
T ss_pred --ECCCCc-----EEEEeecCCCeEEEEEcc-CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCc
Confidence 222322 122211122233466766 45555555666 9999999987652 2222222
Q ss_pred ---ceeeEEEcCC-EEEEEEecCCCeeEEEEEEeec-CceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEEccc
Q 020740 235 ---NVQEIKISPG-IMLLIFTKASGHVPLKILSIED-GTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRI 309 (322)
Q Consensus 235 ---~VqEIkIS~G-imll~~q~~~~~iPlkIlsIed-G~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~ 309 (322)
.+..+.++|. -.++.- ...+ -+.++++.+ ++.+..+...-..-..+.|-. -+.+|+.--.+..+.+||+.+
T Consensus 174 ~~~~~~~~~~~~~~~~l~~~-~~dg--~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~v~d~~~ 249 (369)
T 3zwl_B 174 GLDAATVAGWSTKGKYIIAG-HKDG--KISKYDVSNNYEYVDSIDLHEKSISDMQFSP-DLTYFITSSRDTNSFLVDVST 249 (369)
T ss_dssp TCCCEEEEEECGGGCEEEEE-ETTS--EEEEEETTTTTEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTT
T ss_pred CccceeEEEEcCCCCEEEEE-cCCC--EEEEEECCCCcEeEEEEecCCCceeEEEECC-CCCEEEEecCCceEEEEECCC
Confidence 4555555532 232322 2222 357888888 676666552111112233322 356777778899999999998
Q ss_pred ccce
Q 020740 310 SLFL 313 (322)
Q Consensus 310 ~~~~ 313 (322)
.+..
T Consensus 250 ~~~~ 253 (369)
T 3zwl_B 250 LQVL 253 (369)
T ss_dssp CCEE
T ss_pred Ccee
Confidence 6654
No 48
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=97.11 E-value=0.037 Score=47.12 Aligned_cols=193 Identities=13% Similarity=0.121 Sum_probs=115.1
Q ss_pred cceeEEeeccc---hhhhhhccccceeeec----cccc------EEEEecCC---------CCceEEEEeeecCCCeEEE
Q 020740 96 SKIIEIVAARD---IVFALAQSGVCAAFCR----ETNQ------RICFLNVT---------ADEVIRSLFYNKNNDSLIT 153 (322)
Q Consensus 96 S~V~EIv~a~d---iI~aL~~sG~c~af~r----~tn~------~iC~lN~s---------~dEvIrSiFyNk~NdSlIt 153 (322)
.+|.-+....| ++++-...|....|+. .+++ ..+.+... +..-|.++-++.+.+-|++
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 125 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVT 125 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEE
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEE
Confidence 44555554433 6777777899999999 8888 56655542 4557899999987666665
Q ss_pred EEeEecCCCceeeeeeeehhhhHhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEE
Q 020740 154 VSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS 230 (322)
Q Consensus 154 vSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~~~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlknYs~LYs 230 (322)
.+ .|. .++... ..|+ .+..- -.|++ -+.|.. +|+.++....++..++||+.+-+.+..
T Consensus 126 ~~---~dg--~i~i~~------~~~~-----~~~~~--~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~ 186 (425)
T 1r5m_A 126 GV---ENG--ELRLWN------KTGA-----LLNVL--NFHRAPIVSVKWNK-DGTHIISMDVENVTILWNVISGTVMQH 186 (425)
T ss_dssp EE---TTS--CEEEEE------TTSC-----EEEEE--CCCCSCEEEEEECT-TSSEEEEEETTCCEEEEETTTTEEEEE
T ss_pred Ee---CCC--eEEEEe------CCCC-----eeeec--cCCCccEEEEEECC-CCCEEEEEecCCeEEEEECCCCcEEEE
Confidence 33 222 233221 1121 11110 01222 356665 455555566789999999999998877
Q ss_pred ecccc-----------------eeeEEEcCCEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhh--hccc
Q 020740 231 ISDKN-----------------VQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNE 291 (322)
Q Consensus 231 Isde~-----------------VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE--~f~E 291 (322)
+.... +..+..+++-.++...... -+.++++.+++.+..+.. +..++.-+. .-+.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~i~~~d~~~~~~~~~~~~---~~~~i~~~~~~~~~~ 260 (425)
T 1r5m_A 187 FELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKG---AIFVYQITEKTPTGKLIG---HHGPISVLEFNDTNK 260 (425)
T ss_dssp ECCC---------------CCCBSCCEEEETTEEEEECGGG---CEEEEETTCSSCSEEECC---CSSCEEEEEEETTTT
T ss_pred eeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCC---eEEEEEcCCCceeeeecc---CCCceEEEEECCCCC
Confidence 76543 6667776555544433322 367899999988776641 233332222 1355
Q ss_pred eeEEEecCCceeEEEcccccce
Q 020740 292 KLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 292 kLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
+|+.--.+..+++||+.+.+..
T Consensus 261 ~l~~~~~d~~i~i~d~~~~~~~ 282 (425)
T 1r5m_A 261 LLLSASDDGTLRIWHGGNGNSQ 282 (425)
T ss_dssp EEEEEETTSCEEEECSSSBSCS
T ss_pred EEEEEcCCCEEEEEECCCCccc
Confidence 7888888999999999986543
No 49
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=97.06 E-value=0.13 Score=44.48 Aligned_cols=185 Identities=14% Similarity=0.201 Sum_probs=115.4
Q ss_pred chhhhhhccccceeeecccccEEEEecC-CCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCC
Q 020740 106 DIVFALAQSGVCAAFCRETNQRICFLNV-TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (322)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~~iC~lN~-s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~ 184 (322)
.+++.-...|....||..+++..+.+.. .+..-|.++=++..+..++.++ ..|. .++.-.+ + ++ ..
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~--~~d~--~i~iwd~--~----~~---~~ 153 (383)
T 3ei3_B 87 TTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS--SIRG--ATTLRDF--S----GS---VI 153 (383)
T ss_dssp TEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE--ETTT--EEEEEET--T----SC---EE
T ss_pred CEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE--eCCC--EEEEEEC--C----CC---ce
Confidence 3666667789999999999999998874 6778899999987554554422 2332 2322222 1 11 00
Q ss_pred cceeec--ccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcCCE--EEEEEecCCCeeE
Q 020740 185 ALFESE--SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPGI--MLLIFTKASGHVP 258 (322)
Q Consensus 185 ~LFe~~--~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~Gi--mll~~q~~~~~iP 258 (322)
..+... .-.+.--+.|.. +++.++....++..++||++ -+.+..+. ...|..+.++|.- +++.--. .+ -
T Consensus 154 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-d~--~ 228 (383)
T 3ei3_B 154 QVFAKTDSWDYWYCCVDVSV-SRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSSV-DA--T 228 (383)
T ss_dssp EEEECCCCSSCCEEEEEEET-TTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEET-TS--E
T ss_pred EEEeccCCCCCCeEEEEECC-CCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEeC-CC--E
Confidence 011110 001223456654 56667777789999999994 45666654 4678888888653 3333322 23 3
Q ss_pred EEEEEeec----CceeeeeeeccccCCcc---hhhhhccceeEEEecCCceeEEEcccccc
Q 020740 259 LKILSIED----GTVLKSFNHLLHRNKKV---DFIEQFNEKLLVKQENENLQILDVRISLF 312 (322)
Q Consensus 259 lkIlsIed----G~~l~~f~~~L~~sk~i---qFiE~f~EkLLIKQE~~~LqI~Dl~~~~~ 312 (322)
++|+++.+ ++.+..+.+ ...+ .|-..-+..|+.--.+..+++||+.+.+.
T Consensus 229 i~iwd~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 229 VKLWDLRNIKDKNSYIAEMPH----EKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK 285 (383)
T ss_dssp EEEEEGGGCCSTTCEEEEEEC----SSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred EEEEeCCCCCcccceEEEecC----CCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 68999998 566655532 3333 33322456788888899999999988654
No 50
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=97.05 E-value=0.15 Score=45.87 Aligned_cols=197 Identities=10% Similarity=0.001 Sum_probs=120.7
Q ss_pred cceeEEeeccc--hh-hhhhccccceeeecc--cccEEEEecC-CCCceEEEEeeecCCCeEEEEEeEecCCCceeeeee
Q 020740 96 SKIIEIVAARD--IV-FALAQSGVCAAFCRE--TNQRICFLNV-TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRS 169 (322)
Q Consensus 96 S~V~EIv~a~d--iI-~aL~~sG~c~af~r~--tn~~iC~lN~-s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~ 169 (322)
..|..+....| .+ ++-...|...+||.. +++.+..++. ....-|.++-++..+..|++.+. | -.++.
T Consensus 103 ~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~---~----g~v~~ 175 (450)
T 2vdu_B 103 SYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADK---F----GDVYS 175 (450)
T ss_dssp CCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEET---T----SEEEE
T ss_pred CceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeC---C----CcEEE
Confidence 34666655432 33 444567999999998 8888888874 34566888989987777766431 1 22344
Q ss_pred eehhhhHhCCCCC-CCcceeecccCCCCeEEecCC--CceEEEEecCCCeEEEEeccCcEEEEEec---ccceeeEEEcC
Q 020740 170 TRIEYIRRGKPDA-GFALFESESLKWPGFVEFDDV--NGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKNVQEIKISP 243 (322)
Q Consensus 170 ~~~e~i~~gk~~~-g~~LFe~~~L~~PgFVEFDdv--Ngkilty~aq~~~YrVfdlknYs~LYsIs---de~VqEIkIS~ 243 (322)
.++. .++... ....+.. .-...--+.|... +++.++....|+..+|||+.+-+++..+. ...|..+.+++
T Consensus 176 ~~~~---~~~~~~~~~~~~~~-h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~sd 251 (450)
T 2vdu_B 176 IDIN---SIPEEKFTQEPILG-HVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCGK 251 (450)
T ss_dssp EETT---SCCCSSCCCCCSEE-CSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEECS
T ss_pred EecC---Ccccccccceeeec-ccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEECC
Confidence 4333 222211 1001111 1122234567664 36677777789999999999988887733 35678888886
Q ss_pred CEEEEEEecCCCeeEEEEEEeecCceeeeeeecc--------ccCCc-----------------chhhhhccceeEEEe-
Q 020740 244 GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL--------HRNKK-----------------VDFIEQFNEKLLVKQ- 297 (322)
Q Consensus 244 Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L--------~~sk~-----------------iqFiE~f~EkLLIKQ- 297 (322)
|-+|+.--. .+ -++|+++.+|+.+..+...- .+..+ +.|.. -+.+|++=-
T Consensus 252 ~~~l~s~~~-d~--~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~-~~~~l~~~~~ 327 (450)
T 2vdu_B 252 DYLLLSAGG-DD--KIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK-NLPFVAFFVE 327 (450)
T ss_dssp TTEEEEEES-SS--EEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS-SSSEEEEEET
T ss_pred CCEEEEEeC-CC--eEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC-CCCEEEEEEC
Confidence 666555442 23 47899999999988775210 00001 11110 156777776
Q ss_pred cCCceeEEEc
Q 020740 298 ENENLQILDV 307 (322)
Q Consensus 298 E~~~LqI~Dl 307 (322)
.+..++|||+
T Consensus 328 ~d~~i~iw~~ 337 (450)
T 2vdu_B 328 ATKCIIILEM 337 (450)
T ss_dssp TCSEEEEEEE
T ss_pred CCCeEEEEEe
Confidence 7899999999
No 51
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.015 Score=50.33 Aligned_cols=181 Identities=10% Similarity=0.177 Sum_probs=106.4
Q ss_pred hhhccccceeeecccccEEEEecCCCCceEEEEeeec--CCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcce
Q 020740 110 ALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNK--NNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187 (322)
Q Consensus 110 aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk--~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LF 187 (322)
+-...+...+|+..+++.+..+...+.+-|.++-++. .++.+++.| .|. .++.. +++.|+. ...+
T Consensus 99 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s---~dg--~i~~w-----d~~~~~~---~~~~ 165 (343)
T 3lrv_A 99 LLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWAD---NRG--TIGFQ-----SYEDDSQ---YIVH 165 (343)
T ss_dssp EEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEE---TTC--CEEEE-----ESSSSCE---EEEE
T ss_pred EEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEe---CCC--cEEEE-----ECCCCcE---EEEE
Confidence 3334444455666677767766666666788888887 666666544 222 23222 2223332 0011
Q ss_pred eecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEE-EEec---ccceeeEEEcC-CEEEEEEecCCCeeEEEEE
Q 020740 188 ESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSIS---DKNVQEIKISP-GIMLLIFTKASGHVPLKIL 262 (322)
Q Consensus 188 e~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~L-YsIs---de~VqEIkIS~-Gimll~~q~~~~~iPlkIl 262 (322)
....-...--+.|.. +|+.++.-..|+..++||+++-+.+ ..+. ...|..+.++| |..|+.-- .+ -++|.
T Consensus 166 ~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~--~~--~v~iw 240 (343)
T 3lrv_A 166 SAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC--DQ--TVVCF 240 (343)
T ss_dssp CCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE--SS--BEEEE
T ss_pred ecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe--CC--eEEEE
Confidence 111111122356665 6788887789999999999999876 5554 46789999985 44444444 33 68999
Q ss_pred EeecCceeeeeeec----cccC-CcchhhhhccceeEEEec-CCceeEEEccc
Q 020740 263 SIEDGTVLKSFNHL----LHRN-KKVDFIEQFNEKLLVKQE-NENLQILDVRI 309 (322)
Q Consensus 263 sIedG~~l~~f~~~----L~~s-k~iqFiE~f~EkLLIKQE-~~~LqI~Dl~~ 309 (322)
++.+++.+..+..+ ++.. .-+.| -.-+.+|+.=-. +..++|||+..
T Consensus 241 d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~l~~~s~~d~~i~v~~~~~ 292 (343)
T 3lrv_A 241 DLRKDVGTLAYPTYTIPEFKTGTVTYDI-DDSGKNMIAYSNESNSLTIYKFDK 292 (343)
T ss_dssp ETTSSTTCBSSCCCBC-----CCEEEEE-CTTSSEEEEEETTTTEEEEEEECT
T ss_pred EcCCCCcceeecccccccccccceEEEE-CCCCCEEEEecCCCCcEEEEEEcc
Confidence 99999887655421 1111 01332 233556665444 88899999844
No 52
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=96.97 E-value=0.097 Score=44.71 Aligned_cols=200 Identities=14% Similarity=0.151 Sum_probs=114.9
Q ss_pred ccceeEEeec--cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020740 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (322)
Q Consensus 95 RS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~ 172 (322)
...|..+-.. ..+++.-..-|....||..++..+...-..+...|.++=++..+..++. +-..|. .++.-
T Consensus 97 ~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~--sgs~D~--~v~iw---- 168 (304)
T 2ynn_A 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA--SGCLDR--TVKVW---- 168 (304)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEE--EEETTS--EEEEE----
T ss_pred CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEE--EEeCCC--eEEEE----
Confidence 3445555544 3466666777899999998886554444566677888988875544443 112232 22222
Q ss_pred hhhHhCCCCCCCcceee--cccCCCCeEEecC-CCceEEEEecCCCeEEEEeccCcEEEEEecc--cceeeEEEcCCEEE
Q 020740 173 EYIRRGKPDAGFALFES--ESLKWPGFVEFDD-VNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISPGIML 247 (322)
Q Consensus 173 e~i~~gk~~~g~~LFe~--~~L~~PgFVEFDd-vNgkilty~aq~~~YrVfdlknYs~LYsIsd--e~VqEIkIS~Giml 247 (322)
+++.++ +.+.- ..-..-.++.|.. .++..++-...|+..++||+++-+++..+.. ..|..+.++|.--+
T Consensus 169 -d~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 242 (304)
T 2ynn_A 169 -SLGQST-----PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242 (304)
T ss_dssp -ETTCSS-----CSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE
T ss_pred -ECCCCC-----ccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCE
Confidence 222222 22221 1111123455654 3566777778899999999999999988863 46677777765322
Q ss_pred EEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEEcccc
Q 020740 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRIS 310 (322)
Q Consensus 248 l~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~ 310 (322)
++--...+. ++|.++.+|+.++.+..-.....-+.|--.-+..++.==-+..+.+|++.+.
T Consensus 243 l~s~s~Dg~--i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~~ 303 (304)
T 2ynn_A 243 IISGSEDGT--LKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGND 303 (304)
T ss_dssp EEEEETTSC--EEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC--
T ss_pred EEEEcCCCe--EEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEeccC
Confidence 333333333 6899999999998876311111112221111222355555667888888764
No 53
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=96.96 E-value=0.0097 Score=51.67 Aligned_cols=184 Identities=13% Similarity=0.137 Sum_probs=112.6
Q ss_pred cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCC
Q 020740 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (322)
Q Consensus 105 ~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~ 184 (322)
...++.-...|....||..+++....+... +++...+++...+.|++.| .|. .++.-. +..|+.
T Consensus 68 g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~---~dg--~i~iwd-----~~~~~~---- 131 (420)
T 3vl1_A 68 GSHLYKARLDGHDFLFNTIIRDGSKMLKRA--DYTAVDTAKLQMRRFILGT---TEG--DIKVLD-----SNFNLQ---- 131 (420)
T ss_dssp ETTEEEEEETTEEEEEECCSEETTTTSCSC--CEEEEEEECSSSCEEEEEE---TTS--CEEEEC-----TTSCEE----
T ss_pred CCeEEEEEcCCcEEEEEecccceeeEEecC--CceEEEEEecCCCEEEEEE---CCC--CEEEEe-----CCCcce----
Confidence 345556666788888888777655544433 6677777777666666543 222 222221 222111
Q ss_pred cceeecccCCCCe---EEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcC-CEEEEEEecCCCeeE
Q 020740 185 ALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVP 258 (322)
Q Consensus 185 ~LFe~~~L~~PgF---VEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~-Gimll~~q~~~~~iP 258 (322)
+- ..-.|++- +.|.. +|+.++....|+..++||+.+-+++..+. ...|..+.++| |-+|+.--.. + .
T Consensus 132 -~~--~~~~h~~~v~~~~~~~-~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d-~--~ 204 (420)
T 3vl1_A 132 -RE--IDQAHVSEITKLKFFP-SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLD-G--T 204 (420)
T ss_dssp -EE--ETTSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETT-S--C
T ss_pred -ee--ecccccCccEEEEECC-CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCC-C--c
Confidence 10 00133443 46765 46666667789999999999988776664 56788888884 4444433322 2 3
Q ss_pred EEEEEeecCceeeeeeeccccCCc------------------------chhhhhccceeEEEecCCceeEEEcccccc
Q 020740 259 LKILSIEDGTVLKSFNHLLHRNKK------------------------VDFIEQFNEKLLVKQENENLQILDVRISLF 312 (322)
Q Consensus 259 lkIlsIedG~~l~~f~~~L~~sk~------------------------iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~ 312 (322)
++|.++.+|+.+..+...-.+... +.| -.-+.+|+.=-.+..+++||+++.+.
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~i~d~~~~~~ 281 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEF-GTYGKYVIAGHVSGVITVHNVFSKEQ 281 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCS-SCTTEEEEEEETTSCEEEEETTTCCE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEE-cCCCCEEEEEcCCCeEEEEECCCCce
Confidence 789999999999887632111111 221 12356788888999999999988663
No 54
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=96.94 E-value=0.061 Score=44.75 Aligned_cols=186 Identities=12% Similarity=0.192 Sum_probs=110.1
Q ss_pred cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCC
Q 020740 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (322)
Q Consensus 105 ~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~ 184 (322)
...++.-...|....||..+..........+...|.++-+.......+++|. +.+ ..++.. +++.+++
T Consensus 140 ~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~--~~d-~~i~i~-----d~~~~~~---- 207 (340)
T 4aow_A 140 NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSC--GWD-KLVKVW-----NLANCKL---- 207 (340)
T ss_dssp SSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEE--ETT-SCEEEE-----ETTTTEE----
T ss_pred CccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEE--cCC-CEEEEE-----ECCCCce----
Confidence 4455555667888889887776666666677777777777666555555432 233 122222 2222221
Q ss_pred cceeecccCCCCe---EEecCCCceEEEEecCCCeEEEEeccCcEEEEEeccc-ceeeEEEcCCEEEEEEecCCCeeEEE
Q 020740 185 ALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKISPGIMLLIFTKASGHVPLK 260 (322)
Q Consensus 185 ~LFe~~~L~~PgF---VEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde-~VqEIkIS~Gimll~~q~~~~~iPlk 260 (322)
+. ....|.+. +.|+. +|+.++-...|+..++||+.+...++.+... .+..+..+|+-.++..- ..+. ++
T Consensus 208 -~~--~~~~h~~~v~~~~~s~-~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~d~~--i~ 280 (340)
T 4aow_A 208 -KT--NHIGHTGYLNTVTVSP-DGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAA-TGPS--IK 280 (340)
T ss_dssp -EE--EECCCSSCEEEEEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEE-ETTE--EE
T ss_pred -ee--EecCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEeeecCCCCceeecc-CCCE--EE
Confidence 11 11123333 45654 5666666778999999999999999888654 45666676543333222 2232 67
Q ss_pred EEEeecCceeeeeeecc------ccCCcchhhh--hccceeEEEecCCceeEEEccc
Q 020740 261 ILSIEDGTVLKSFNHLL------HRNKKVDFIE--QFNEKLLVKQENENLQILDVRI 309 (322)
Q Consensus 261 IlsIedG~~l~~f~~~L------~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~ 309 (322)
|.++++++.+..+.... .+...|-=+. .-+.+|+.==+|..++|||+.+
T Consensus 281 iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 281 IWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp EEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred EEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 88999988877664211 1122221111 1245666667889999999976
No 55
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.94 E-value=0.083 Score=46.05 Aligned_cols=178 Identities=17% Similarity=0.271 Sum_probs=113.5
Q ss_pred chhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCc
Q 020740 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185 (322)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~ 185 (322)
..+++-...|....|+..+++....+... ...|.++=++.+...|++.| .|. .++ .. +++.|++
T Consensus 135 ~~l~~g~~dg~v~i~~~~~~~~~~~~~~~-~~~v~~~~~spdg~~lasg~---~dg--~i~--iw---d~~~~~~----- 198 (321)
T 3ow8_A 135 QYLATGTHVGKVNIFGVESGKKEYSLDTR-GKFILSIAYSPDGKYLASGA---IDG--IIN--IF---DIATGKL----- 198 (321)
T ss_dssp SEEEEECTTSEEEEEETTTCSEEEEEECS-SSCEEEEEECTTSSEEEEEE---TTS--CEE--EE---ETTTTEE-----
T ss_pred CEEEEEcCCCcEEEEEcCCCceeEEecCC-CceEEEEEECCCCCEEEEEc---CCC--eEE--EE---ECCCCcE-----
Confidence 35555667788899999999988877754 44577888888777666533 222 222 22 2222221
Q ss_pred ceeecc-cCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc--cceeeEEEcC-CEEEEEEecCCCeeEEEE
Q 020740 186 LFESES-LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP-GIMLLIFTKASGHVPLKI 261 (322)
Q Consensus 186 LFe~~~-L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsd--e~VqEIkIS~-Gimll~~q~~~~~iPlkI 261 (322)
+.+-.. -...--+.|+. +|+.|+....|+..++||+++-+++..+.. ..|..+.++| |-.|+.-- ... -++|
T Consensus 199 ~~~~~~h~~~v~~l~~sp-d~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s-~D~--~v~i 274 (321)
T 3ow8_A 199 LHTLEGHAMPIRSLTFSP-DSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS-SDK--SVKV 274 (321)
T ss_dssp EEEECCCSSCCCEEEECT-TSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE-TTS--CEEE
T ss_pred EEEEcccCCceeEEEEcC-CCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe-CCC--cEEE
Confidence 211110 01123467765 566777677899999999999998888764 4478888885 44444333 233 3789
Q ss_pred EEeecCceeeeeeeccccCCc---chhhhhccceeEEEecCCceeEEEc
Q 020740 262 LSIEDGTVLKSFNHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDV 307 (322)
Q Consensus 262 lsIedG~~l~~f~~~L~~sk~---iqFiE~f~EkLLIKQE~~~LqI~Dl 307 (322)
.++.+|+++..+.. | ... +.|-. -+.+|+-==++..++|||+
T Consensus 275 wd~~~~~~~~~~~~--h-~~~v~~v~~s~-~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 275 WDVGTRTCVHTFFD--H-QDQVWGVKYNG-NGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EETTTTEEEEEECC--C-SSCEEEEEECT-TSSEEEEEETTCCEEEEEC
T ss_pred EeCCCCEEEEEEcC--C-CCcEEEEEECC-CCCEEEEEeCCCeEEEEeC
Confidence 99999999987752 2 333 33322 2456776778999999996
No 56
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=96.94 E-value=0.024 Score=49.41 Aligned_cols=183 Identities=16% Similarity=0.274 Sum_probs=115.3
Q ss_pred hhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcc
Q 020740 107 IVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFAL 186 (322)
Q Consensus 107 iI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~L 186 (322)
+++.-...|....||..+++.+..+...+..+ .++-++.....|++.| .+ ..++. . ++..|+ +.
T Consensus 94 ~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~-~~~~~spdg~~l~~g~----~d-g~v~i--~---~~~~~~-----~~ 157 (321)
T 3ow8_A 94 IAASSSLDAHIRLWDLENGKQIKSIDAGPVDA-WTLAFSPDSQYLATGT----HV-GKVNI--F---GVESGK-----KE 157 (321)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEECCTTCC-CCEEECTTSSEEEEEC----TT-SEEEE--E---ETTTCS-----EE
T ss_pred EEEEEeCCCcEEEEECCCCCEEEEEeCCCccE-EEEEECCCCCEEEEEc----CC-CcEEE--E---EcCCCc-----ee
Confidence 44444556888999999999998888766554 4577777766665532 22 12222 2 222222 22
Q ss_pred eeecc-cCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc--cceeeEEEcC-CEEEEEEecCCCeeEEEEE
Q 020740 187 FESES-LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP-GIMLLIFTKASGHVPLKIL 262 (322)
Q Consensus 187 Fe~~~-L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsd--e~VqEIkIS~-Gimll~~q~~~~~iPlkIl 262 (322)
+.-.. -.+.--+.|.. +|+.++....++..++||+++-+++..+.. ..|..+.++| |-+|+.-- .... ++|.
T Consensus 158 ~~~~~~~~~v~~~~~sp-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s-~dg~--i~iw 233 (321)
T 3ow8_A 158 YSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTAS-DDGY--IKIY 233 (321)
T ss_dssp EEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEEC-TTSC--EEEE
T ss_pred EEecCCCceEEEEEECC-CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEc-CCCe--EEEE
Confidence 21110 01111245554 677777788899999999999999988874 4588889985 44444333 3333 7889
Q ss_pred EeecCceeeeeeeccccCCc---chhhhhccceeEEEecCCceeEEEcccccce
Q 020740 263 SIEDGTVLKSFNHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 263 sIedG~~l~~f~~~L~~sk~---iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
++++++.+..+.- | ... +.|-. -+..|+.=-.+..++|||+.+.+.+
T Consensus 234 d~~~~~~~~~~~~--h-~~~v~~~~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~ 283 (321)
T 3ow8_A 234 DVQHANLAGTLSG--H-ASWVLNVAFCP-DDTHFVSSSSDKSVKVWDVGTRTCV 283 (321)
T ss_dssp ETTTCCEEEEECC--C-SSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEE
T ss_pred ECCCcceeEEEcC--C-CCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCEEE
Confidence 9999998876641 2 222 33321 2556777779999999999886543
No 57
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=96.93 E-value=0.14 Score=45.15 Aligned_cols=187 Identities=13% Similarity=0.241 Sum_probs=112.7
Q ss_pred chhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCc
Q 020740 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185 (322)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~ 185 (322)
..++.-..-|....||..+++....+... ...|.++-|+.....+++.+ .|+ .|+.-+... ++. .+..
T Consensus 77 ~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~-~~~v~~~~~sp~g~~lasg~---~d~----~i~v~~~~~---~~~-~~~~ 144 (354)
T 2pbi_B 77 RRIVSSSQDGKVIVWDSFTTNKEHAVTMP-CTWVMACAYAPSGCAIACGG---LDN----KCSVYPLTF---DKN-ENMA 144 (354)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECS-SSCCCEEEECTTSSEEEEES---TTS----EEEEEECCC---CTT-CCSG
T ss_pred CEEEEEeCCCeEEEEECCCCCcceEEecC-CCCEEEEEECCCCCEEEEee---CCC----CEEEEEEec---ccc-cccc
Confidence 35555667789999999999888877654 44567788887766665533 222 233322211 110 0000
Q ss_pred ceeecccCCCCe---EEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcC---CEEEEEEecCCCee
Q 020740 186 LFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP---GIMLLIFTKASGHV 257 (322)
Q Consensus 186 LFe~~~L~~PgF---VEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~---Gimll~~q~~~~~i 257 (322)
--....-.|.+. +.|...+..++|. ..|+..++||+.+-+++..+. ...|.-+.+++ |-.++.--...
T Consensus 145 ~~~~~~~~h~~~v~~~~~~~~~~~l~t~-s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg--- 220 (354)
T 2pbi_B 145 AKKKSVAMHTNYLSACSFTNSDMQILTA-SGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDK--- 220 (354)
T ss_dssp GGCEEEEECSSCEEEEEECSSSSEEEEE-ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTS---
T ss_pred ccceeeeccCCcEEEEEEeCCCCEEEEE-eCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCC---
Confidence 000111124443 4566655566664 568999999999999887775 34566666654 44444433222
Q ss_pred EEEEEEeecCceeeeeeeccccCCcchhhhh--ccceeEEEecCCceeEEEccccc
Q 020740 258 PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVRISL 311 (322)
Q Consensus 258 PlkIlsIedG~~l~~f~~~L~~sk~iqFiE~--f~EkLLIKQE~~~LqI~Dl~~~~ 311 (322)
-+++.++.+|+.+..+.. | ..+|.-+.- -+..|+.=-.+..+++||+++.+
T Consensus 221 ~v~~wd~~~~~~~~~~~~--h-~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~ 273 (354)
T 2pbi_B 221 KAMVWDMRSGQCVQAFET--H-ESDVNSVRYYPSGDAFASGSDDATCRLYDLRADR 273 (354)
T ss_dssp CEEEEETTTCCEEEEECC--C-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred eEEEEECCCCcEEEEecC--C-CCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCc
Confidence 368899999998887641 2 333322221 24567777789999999998754
No 58
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=96.91 E-value=0.016 Score=47.32 Aligned_cols=108 Identities=18% Similarity=0.179 Sum_probs=73.1
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCc----EEEEEe--cccceeeEEEcC---CEEEEEEecCCCeeEEEEEEeecCc
Q 020740 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNY----TMLYSI--SDKNVQEIKISP---GIMLLIFTKASGHVPLKILSIEDGT 268 (322)
Q Consensus 198 VEFDdvNgkilty~aq~~~YrVfdlknY----s~LYsI--sde~VqEIkIS~---Gimll~~q~~~~~iPlkIlsIedG~ 268 (322)
+.|+. +|+.++....|+..++||+.+- +++..+ ....|..+.++| |-+|+.-.... -++|.++.+|+
T Consensus 17 ~~~~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg---~v~vwd~~~~~ 92 (351)
T 3f3f_A 17 VVYDF-YGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK---TVKLWEEDPDQ 92 (351)
T ss_dssp EEECS-SSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS---CEEEEEECTTS
T ss_pred EEEcC-CCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC---eEEEEecCCCc
Confidence 45665 6777777788999999999865 344433 456799999986 77766554433 36789999884
Q ss_pred ---------eeeeeeeccccCCcchhhhhc----cceeEEEecCCceeEEEcccccc
Q 020740 269 ---------VLKSFNHLLHRNKKVDFIEQF----NEKLLVKQENENLQILDVRISLF 312 (322)
Q Consensus 269 ---------~l~~f~~~L~~sk~iqFiE~f----~EkLLIKQE~~~LqI~Dl~~~~~ 312 (322)
.+..+. .+...+.-+.-. +.+|+.--.+..+++||+.+.+.
T Consensus 93 ~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~ 146 (351)
T 3f3f_A 93 EECSGRRWNKLCTLN---DSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSD 146 (351)
T ss_dssp CTTSSCSEEEEEEEC---CCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTC
T ss_pred ccccccCcceeeeec---ccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHH
Confidence 344333 223443333322 55677778999999999988664
No 59
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.87 E-value=0.06 Score=47.83 Aligned_cols=182 Identities=14% Similarity=0.232 Sum_probs=112.5
Q ss_pred ccceeEEeeccchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhh
Q 020740 95 RSKIIEIVAARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (322)
Q Consensus 95 RS~V~EIv~a~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~ 174 (322)
...|..+-....++++-...|....||..+++.+..+.. +..-|.++-++.....+++.| .|. .++.-.
T Consensus 270 ~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~sg~---~dg--~i~vwd----- 338 (464)
T 3v7d_B 270 MASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG-HTDRIYSTIYDHERKRCISAS---MDT--TIRIWD----- 338 (464)
T ss_dssp SSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEEETTTTEEEEEE---TTS--CEEEEE-----
T ss_pred cceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCCCEEEEEEcCCCCEEEEEe---CCC--cEEEEE-----
Confidence 445556655567888888899999999999999988865 455688899998777776644 222 233332
Q ss_pred hHhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceee-EEEc-CCEEEEE
Q 020740 175 IRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQE-IKIS-PGIMLLI 249 (322)
Q Consensus 175 i~~gk~~~g~~LFe~~~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~VqE-IkIS-~Gimll~ 249 (322)
++.|+ ++.+- -.|++ -+.|+ ++.++-...|+..+|||+.+...++.....+... +.++ +|-+++.
T Consensus 339 ~~~~~-----~~~~~--~~h~~~v~~~~~~---~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 408 (464)
T 3v7d_B 339 LENGE-----LMYTL--QGHTALVGLLRLS---DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVS 408 (464)
T ss_dssp TTTTE-----EEEEE--CCCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEE
T ss_pred CCCCc-----EEEEE--eCCCCcEEEEEEc---CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEE
Confidence 22222 22211 01233 34554 5666666789999999999999999886654333 3444 3444444
Q ss_pred EecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCcee
Q 020740 250 FTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQ 303 (322)
Q Consensus 250 ~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~Lq 303 (322)
-. .+ -++|.++++|+.+..+. ......+.=+.--+..+++==.+....
T Consensus 409 ~~--dg--~i~iwd~~~g~~~~~~~--~~~~~~v~~v~~~~~~l~~~~~~~g~~ 456 (464)
T 3v7d_B 409 GS--EN--QFNIYNLRSGKLVHANI--LKDADQIWSVNFKGKTLVAAVEKDGQS 456 (464)
T ss_dssp EE--TT--EEEEEETTTCCEEESCT--TTTCSEEEEEEEETTEEEEEEEETTEE
T ss_pred ec--CC--eEEEEECCCCcEEehhh--ccCCCcEEEEEecCCEEEEEEEeCCeE
Confidence 33 34 47999999999998643 222333332322356666554333333
No 60
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=96.82 E-value=0.11 Score=42.77 Aligned_cols=187 Identities=14% Similarity=0.070 Sum_probs=97.8
Q ss_pred cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCC
Q 020740 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (322)
Q Consensus 105 ~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~ 184 (322)
..+++.-...|....++..++...-..-..+...+.++.++.....|++.+ .|. .++.- +++.|+.....
T Consensus 119 ~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~---~d~--~i~iw-----d~~~~~~~~~~ 188 (318)
T 4ggc_A 119 SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGG---NDN--LVNVW-----PSAPGEGGWVP 188 (318)
T ss_dssp TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE---TTS--CEEEE-----ESSCBTTBSCC
T ss_pred CCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEe---cCc--ceeEE-----ECCCCcccccc
Confidence 444555555666666666555433333334445566666666666555422 232 22222 33333321111
Q ss_pred cceeecccCCCC---eEEecCCCceEE--EEecCCCeEEEEeccCcEEEEEec-ccceeeEEEcC-CEEEEEEec-CCCe
Q 020740 185 ALFESESLKWPG---FVEFDDVNGKVL--TYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISP-GIMLLIFTK-ASGH 256 (322)
Q Consensus 185 ~LFe~~~L~~Pg---FVEFDdvNgkil--ty~aq~~~YrVfdlknYs~LYsIs-de~VqEIkIS~-Gimll~~q~-~~~~ 256 (322)
+ .....+.+ .+.+...++.++ +....++..++||........... ...+..+..++ +-.+++... ..+.
T Consensus 189 -~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~ 265 (318)
T 4ggc_A 189 -L--QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ 265 (318)
T ss_dssp -S--EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCC
T ss_pred -e--eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCE
Confidence 1 11112222 234444444443 344568899999999988555443 33344444442 222222221 2222
Q ss_pred eEEEEEEeecCceeeeeeeccccCCcchhhhhc--cceeEEEecCCceeEEEccc
Q 020740 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRI 309 (322)
Q Consensus 257 iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f--~EkLLIKQE~~~LqI~Dl~~ 309 (322)
++|.++.+|+.+..+. .+...|--+.-. +.+|+-==+|..++|||+..
T Consensus 266 --i~iwd~~~~~~~~~l~---gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 266 --LVIWKYPTMAKVAELK---GHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp --EEEEETTTCCEEEEEC---CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred --EEEEECCCCcEEEEEc---CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 6789999999998876 224454433322 44565566899999999965
No 61
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.82 E-value=0.055 Score=51.53 Aligned_cols=184 Identities=13% Similarity=0.164 Sum_probs=119.3
Q ss_pred cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCC
Q 020740 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (322)
Q Consensus 105 ~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~ 184 (322)
...+++-...|....||..+++.+..+.. +..-|+++-++.+...|++.|. |. . .+.-+ +..|+
T Consensus 25 ~~~la~~~~~g~v~iwd~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~---dg--~--i~vw~---~~~~~----- 88 (814)
T 3mkq_A 25 EPWVLTTLYSGRVEIWNYETQVEVRSIQV-TETPVRAGKFIARKNWIIVGSD---DF--R--IRVFN---YNTGE----- 88 (814)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEEEGGGTEEEEEET---TS--E--EEEEE---TTTCC-----
T ss_pred CCEEEEEeCCCEEEEEECCCCceEEEEec-CCCcEEEEEEeCCCCEEEEEeC---CC--e--EEEEE---CCCCc-----
Confidence 34566667789999999999999998874 5566888999988777776542 22 2 22222 22222
Q ss_pred cceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCc-EEEEEe--cccceeeEEEcC--CEEEEEEecCCCe
Q 020740 185 ALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSI--SDKNVQEIKISP--GIMLLIFTKASGH 256 (322)
Q Consensus 185 ~LFe~~~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlknY-s~LYsI--sde~VqEIkIS~--Gimll~~q~~~~~ 256 (322)
.+.+- -.|++ -+.|...+.. ++....++..++||+.+- .+.-.+ ....|..+..+| |-+++.-... +
T Consensus 89 ~~~~~--~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~d-g- 163 (814)
T 3mkq_A 89 KVVDF--EAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD-R- 163 (814)
T ss_dssp EEEEE--ECCSSCEEEEEECSSSSE-EEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETT-S-
T ss_pred EEEEE--ecCCCCEEEEEEeCCCCE-EEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCC-C-
Confidence 22211 12344 3456654444 555667899999999875 544444 346688999987 5454444333 2
Q ss_pred eEEEEEEeecCceeeeeeeccccCCcchhhhh----ccceeEEEecCCceeEEEcccccc
Q 020740 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ----FNEKLLVKQENENLQILDVRISLF 312 (322)
Q Consensus 257 iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~----f~EkLLIKQE~~~LqI~Dl~~~~~ 312 (322)
.+.++++.+++....+.. +....+..+.- -+..|+.--.+..+++||+.+.+.
T Consensus 164 -~v~vwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 220 (814)
T 3mkq_A 164 -TVKVWSLGQSTPNFTLTT--GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSC 220 (814)
T ss_dssp -EEEEEETTCSSCSEEEEC--CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEE
T ss_pred -eEEEEECCCCcceeEEec--CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 367889988888776652 33455555544 345788888899999999987654
No 62
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=96.81 E-value=0.12 Score=45.86 Aligned_cols=178 Identities=14% Similarity=0.203 Sum_probs=103.5
Q ss_pred hccccceeeecccccEEEEecCCC-----------------CceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhh
Q 020740 112 AQSGVCAAFCRETNQRICFLNVTA-----------------DEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (322)
Q Consensus 112 ~~sG~c~af~r~tn~~iC~lN~s~-----------------dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~ 174 (322)
...+....|+..+|+.+..+.... +..|+++-++....-|++.| .|. .++. -+
T Consensus 82 g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~---~d~--~i~i--wd--- 151 (393)
T 1erj_A 82 GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGA---EDR--LIRI--WD--- 151 (393)
T ss_dssp ECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEE---TTS--CEEE--EE---
T ss_pred EcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEc---CCC--eEEE--EE---
Confidence 345677899999999988875432 22489999998776665533 222 2222 22
Q ss_pred hHhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc-cceeeEEEcC--CEEEE
Q 020740 175 IRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KNVQEIKISP--GIMLL 248 (322)
Q Consensus 175 i~~gk~~~g~~LFe~~~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsd-e~VqEIkIS~--Gimll 248 (322)
+..|+ .+.. .-.|.+ -+.|... |+.++....|+..++||+++-+++..+.. ..+..+.++| |-+++
T Consensus 152 ~~~~~-----~~~~--~~~h~~~v~~~~~~p~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 223 (393)
T 1erj_A 152 IENRK-----IVMI--LQGHEQDIYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIA 223 (393)
T ss_dssp TTTTE-----EEEE--ECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEE
T ss_pred CCCCc-----EEEE--EccCCCCEEEEEEcCC-CCEEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEE
Confidence 22221 1111 011233 3556554 44555566799999999999987776653 4567777774 55544
Q ss_pred EEecCCCeeEEEEEEeecCceeeeeeec----cccCCc---chhhhhccceeEEEecCCceeEEEccccc
Q 020740 249 IFTKASGHVPLKILSIEDGTVLKSFNHL----LHRNKK---VDFIEQFNEKLLVKQENENLQILDVRISL 311 (322)
Q Consensus 249 ~~q~~~~~iPlkIlsIedG~~l~~f~~~----L~~sk~---iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~ 311 (322)
.--... . ++|+++.+|+.+..+... ..+... +.|- .-+..|+.=-.+..+++||+.+.+
T Consensus 224 ~~s~d~-~--v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~-~~g~~l~s~s~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 224 AGSLDR-A--VRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT-RDGQSVVSGSLDRSVKLWNLQNAN 289 (393)
T ss_dssp EEETTS-C--EEEEETTTCCEEEEEC------CCCSSCEEEEEEC-TTSSEEEEEETTSEEEEEEC----
T ss_pred EEcCCC-c--EEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC-CCCCEEEEEeCCCEEEEEECCCCC
Confidence 443332 2 688999999888765311 111222 2222 124566666789999999998743
No 63
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=96.80 E-value=0.19 Score=42.22 Aligned_cols=187 Identities=11% Similarity=0.087 Sum_probs=116.3
Q ss_pred hhhhhccccceeeecccccEEEEecCCCCc--------eEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCC
Q 020740 108 VFALAQSGVCAAFCRETNQRICFLNVTADE--------VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGK 179 (322)
Q Consensus 108 I~aL~~sG~c~af~r~tn~~iC~lN~s~dE--------vIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk 179 (322)
+++-...|...+||..|++.+..+...... -++++-++...+.+++.+ ...+. .....+ +..|+
T Consensus 104 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~~----~i~~~d---~~~~~ 175 (353)
T 3vgz_A 104 WFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISG-IGKES----VIWVVD---GGNIK 175 (353)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEE-ESSSC----EEEEEE---TTTTE
T ss_pred EEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEe-cCCCc----eEEEEc---CCCCc
Confidence 333344578889999999988888764432 278888988777665533 22221 122222 22222
Q ss_pred CCCCCcceeec-ccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc------cceeeEEEcC-CEEEEEEe
Q 020740 180 PDAGFALFESE-SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD------KNVQEIKISP-GIMLLIFT 251 (322)
Q Consensus 180 ~~~g~~LFe~~-~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsd------e~VqEIkIS~-Gimll~~q 251 (322)
. .-.-. .-.+|.-+.|+.....+.+.+ .++...+||+.+.+.+..+.. ..+..+.++| |-.+++-.
T Consensus 176 ~-----~~~~~~~~~~~~~~~~s~dg~~l~~~~-~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 249 (353)
T 3vgz_A 176 L-----KTAIQNTGKMSTGLALDSEGKRLYTTN-ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITD 249 (353)
T ss_dssp E-----EEEECCCCTTCCCCEEETTTTEEEEEC-TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEE
T ss_pred e-----EEEecCCCCccceEEECCCCCEEEEEc-CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEe
Confidence 1 11111 233577788887666666654 478888999999998877653 1355678873 54445544
Q ss_pred cCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEe-cCCceeEEEcccccce
Q 020740 252 KASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRISLFL 313 (322)
Q Consensus 252 ~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQ-E~~~LqI~Dl~~~~~~ 313 (322)
...+. +.++++.+|+.+..+.. +....+.|- .-+.+|++-. ++..+.+||+.+.+++
T Consensus 250 ~~~~~--v~~~d~~~~~~~~~~~~--~~~~~~~~s-~dg~~l~v~~~~~~~v~~~d~~~~~~~ 307 (353)
T 3vgz_A 250 SKAAE--VLVVDTRNGNILAKVAA--PESLAVLFN-PARNEAYVTHRQAGKVSVIDAKSYKVV 307 (353)
T ss_dssp SSSSE--EEEEETTTCCEEEEEEC--SSCCCEEEE-TTTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCCE--EEEEECCCCcEEEEEEc--CCCceEEEC-CCCCEEEEEECCCCeEEEEECCCCeEE
Confidence 44343 57899999999887763 333334432 2255677766 6889999999887654
No 64
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=96.75 E-value=0.18 Score=44.82 Aligned_cols=196 Identities=15% Similarity=0.150 Sum_probs=113.4
Q ss_pred eeEEeec--cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhh
Q 020740 98 IIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI 175 (322)
Q Consensus 98 V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i 175 (322)
|..+-+. ...++.-...|....||..+++.+..+.. +..-|.++-++...+.|++.| .+ ..++ .- ++
T Consensus 126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~-h~~~v~~~~~~p~~~~l~s~s----~d-~~v~--iw---d~ 194 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQG-HEQDIYSLDYFPSGDKLVSGS----GD-RTVR--IW---DL 194 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-CSSCEEEEEECTTSSEEEEEE----TT-SEEE--EE---ET
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc-CCCCEEEEEEcCCCCEEEEec----CC-CcEE--EE---EC
Confidence 5555544 23566667789999999999998888764 455678898888777776644 22 2222 22 23
Q ss_pred HhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec---------ccceeeEEEcC-CE
Q 020740 176 RRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---------DKNVQEIKISP-GI 245 (322)
Q Consensus 176 ~~gk~~~g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs---------de~VqEIkIS~-Gi 245 (322)
+.|+. ...-..-...--+.|...+|+.++....|+..++||+++-.++..+. ...|..+.++| |-
T Consensus 195 ~~~~~-----~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~ 269 (393)
T 1erj_A 195 RTGQC-----SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ 269 (393)
T ss_dssp TTTEE-----EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS
T ss_pred CCCee-----EEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCC
Confidence 33221 11111111223456777788888888899999999999988877763 24577777774 44
Q ss_pred EEEEEecCCCeeEEEEEEeecCceeeeee---------eccccCCcc---hhhhhccceeEEEecCCceeEEEcccccce
Q 020740 246 MLLIFTKASGHVPLKILSIEDGTVLKSFN---------HLLHRNKKV---DFIEQFNEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 246 mll~~q~~~~~iPlkIlsIedG~~l~~f~---------~~L~~sk~i---qFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
+|+.- ...+. ++|.++.++....... .+..+...+ .|- .-+.+|+.=-++..+++||+.+.+.+
T Consensus 270 ~l~s~-s~d~~--v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~l~sgs~D~~v~iwd~~~~~~~ 345 (393)
T 1erj_A 270 SVVSG-SLDRS--VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT-QNDEYILSGSKDRGVLFWDKKSGNPL 345 (393)
T ss_dssp EEEEE-ETTSE--EEEEEC---------------CEEEEEECCSSCEEEEEEC-GGGCEEEEEETTSEEEEEETTTCCEE
T ss_pred EEEEE-eCCCE--EEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEEC-CCCCEEEEEeCCCeEEEEECCCCeEE
Confidence 43332 22222 5778877654322110 001112211 111 12456777778999999999886643
No 65
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=96.71 E-value=0.13 Score=44.86 Aligned_cols=196 Identities=10% Similarity=0.104 Sum_probs=119.9
Q ss_pred ceeEEeec--cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhh
Q 020740 97 KIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (322)
Q Consensus 97 ~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~ 174 (322)
.|..+... ..+++.-...|...+||..+++.+..+. .+...+.++-++..+..+++++ ..|. .+ +..+
T Consensus 171 ~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~--~~~~--~i--~~~d--- 240 (433)
T 3bws_A 171 FVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD-LTGKWSKILLYDPIRDLVYCSN--WISE--DI--SVID--- 240 (433)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE-CSSSSEEEEEEETTTTEEEEEE--TTTT--EE--EEEE---
T ss_pred ceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc-CCCCCeeEEEEcCCCCEEEEEe--cCCC--cE--EEEE---
Confidence 45444443 3455555667888999999999888876 4556788899998777665532 1122 22 2222
Q ss_pred hHhCCCCCCCcceeecccCCCCeEEecCCCceEEEEec-------CCCeEEEEeccCcEEEEEecc-cceeeEEEcC-CE
Q 020740 175 IRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSA-------QDSIYKVFDLKNYTMLYSISD-KNVQEIKISP-GI 245 (322)
Q Consensus 175 i~~gk~~~g~~LFe~~~L~~PgFVEFDdvNgkilty~a-------q~~~YrVfdlknYs~LYsIsd-e~VqEIkIS~-Gi 245 (322)
++.|+. +..-..-..|..+.|+..+..+++.+. .++..++||+.+-+.+..+.. ..+..+.++| |-
T Consensus 241 ~~~~~~-----~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~ 315 (433)
T 3bws_A 241 RKTKLE-----IRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTEN 315 (433)
T ss_dssp TTTTEE-----EEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTT
T ss_pred CCCCcE-----EEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCC
Confidence 222221 111111223667788876666666554 578999999999887776632 3566777775 32
Q ss_pred EEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhhc--cceeEEEecC---------------CceeEEEcc
Q 020740 246 MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF--NEKLLVKQEN---------------ENLQILDVR 308 (322)
Q Consensus 246 mll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f--~EkLLIKQE~---------------~~LqI~Dl~ 308 (322)
.+++-....+ -+.++++.+|+.+..+.+ ...+.-+... +..|++--++ ..+.+||+.
T Consensus 316 ~l~~~~~~~~--~v~v~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~ 389 (433)
T 3bws_A 316 KIYVSDMCCS--KIEVYDLKEKKVQKSIPV----FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTT 389 (433)
T ss_dssp EEEEEETTTT--EEEEEETTTTEEEEEEEC----SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETT
T ss_pred EEEEEecCCC--EEEEEECCCCcEEEEecC----CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECC
Confidence 3334333334 367899999998876653 2223223222 5567777654 489999998
Q ss_pred cccce
Q 020740 309 ISLFL 313 (322)
Q Consensus 309 ~~~~~ 313 (322)
+.+.+
T Consensus 390 ~~~~~ 394 (433)
T 3bws_A 390 TDTVK 394 (433)
T ss_dssp TTEEE
T ss_pred CCcEE
Confidence 86654
No 66
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.2 Score=42.00 Aligned_cols=198 Identities=13% Similarity=0.062 Sum_probs=114.5
Q ss_pred ceeEEeec--cchhhhhhccccceeeecc--cccEEEEecCCCCceEEEEeeecC--CCeEEEEEeEecCCCceeeeeee
Q 020740 97 KIIEIVAA--RDIVFALAQSGVCAAFCRE--TNQRICFLNVTADEVIRSLFYNKN--NDSLITVSVYASDNFSSLRCRST 170 (322)
Q Consensus 97 ~V~EIv~a--~diI~aL~~sG~c~af~r~--tn~~iC~lN~s~dEvIrSiFyNk~--NdSlItvSvy~sd~fS~LkCr~~ 170 (322)
.|.-+... ...+++-...|....||.. +++.+..+.. +...|.++-++.. .+-|++.| .|. .++.-.+
T Consensus 13 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~~---~dg--~v~iwd~ 86 (379)
T 3jrp_A 13 LIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTG-HEGPVWRVDWAHPKFGTILASCS---YDG--KVLIWKE 86 (379)
T ss_dssp CEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEE---TTS--CEEEEEE
T ss_pred cEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecC-CCCcEEEEEeCCCCCCCEEEEec---cCC--EEEEEEc
Confidence 34444333 3455555678999999988 5666666654 4556778877644 44454433 222 2333322
Q ss_pred ehhhhHhCCCCCCCcceee-cccCCCCeEEecCCC-ceEEEEecCCCeEEEEeccCcE----EEEEecccceeeEEEcC-
Q 020740 171 RIEYIRRGKPDAGFALFES-ESLKWPGFVEFDDVN-GKVLTYSAQDSIYKVFDLKNYT----MLYSISDKNVQEIKISP- 243 (322)
Q Consensus 171 ~~e~i~~gk~~~g~~LFe~-~~L~~PgFVEFDdvN-gkilty~aq~~~YrVfdlknYs----~LYsIsde~VqEIkIS~- 243 (322)
..|+. .++... ..-...--+.|...+ +..++....++..++||+++-. ..+.-....|..+..+|
T Consensus 87 -----~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~ 158 (379)
T 3jrp_A 87 -----ENGRW---SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPA 158 (379)
T ss_dssp -----ETTEE---EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCC
T ss_pred -----CCCce---eEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCc
Confidence 12210 001100 001112235566554 6777777889999999998863 23334456788888887
Q ss_pred -------------CEEEEEEecCCCeeEEEEEEeecCceeeeeeecc-ccCCcchhhhhc-----cceeEEEecCCceeE
Q 020740 244 -------------GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL-HRNKKVDFIEQF-----NEKLLVKQENENLQI 304 (322)
Q Consensus 244 -------------Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L-~~sk~iqFiE~f-----~EkLLIKQE~~~LqI 304 (322)
|-+++.--... -++|+++.+++........+ .+...+.-+.-. +.+|+.=-.+..+++
T Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~i 235 (379)
T 3jrp_A 159 TIEEDGEHNGTKESRKFVTGGADN---LVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCII 235 (379)
T ss_dssp C----------CTTCEEEEEETTS---CEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEE
T ss_pred cccccccccCCCCCCEEEEEeCCC---eEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEE
Confidence 56555544333 36889999887554333211 223433323222 567888888999999
Q ss_pred EEccccc
Q 020740 305 LDVRISL 311 (322)
Q Consensus 305 ~Dl~~~~ 311 (322)
||+.+.+
T Consensus 236 wd~~~~~ 242 (379)
T 3jrp_A 236 WTQDNEQ 242 (379)
T ss_dssp EEESSTT
T ss_pred EeCCCCC
Confidence 9999853
No 67
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=96.63 E-value=0.24 Score=41.29 Aligned_cols=186 Identities=12% Similarity=0.141 Sum_probs=108.0
Q ss_pred chhhhhhccccceeeeccccc-EEEEecCCCC---ceEEEEe----eecCCCeEEEEEeEecCCCceeeeeeeehhhhHh
Q 020740 106 DIVFALAQSGVCAAFCRETNQ-RICFLNVTAD---EVIRSLF----YNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR 177 (322)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~-~iC~lN~s~d---EvIrSiF----yNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~ 177 (322)
..++.-...|....||..+++ .+..+..... ..|.++- ++.....+++.+ .|. .++.- +++.
T Consensus 130 ~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~---~d~--~i~i~-----d~~~ 199 (357)
T 3i2n_A 130 PEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGY---DNG--DIKLF-----DLRN 199 (357)
T ss_dssp CEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEE---TTS--EEEEE-----ETTT
T ss_pred cEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEc---cCC--eEEEE-----ECcc
Confidence 367777778999999998887 6777765444 2666665 555555554432 222 23322 2222
Q ss_pred CCCCCCCcceeecccCCCCeEEecCC--CceEEEEecCCCeEEEEeccCcEEEEE-------ecccceeeEEEcCC-E-E
Q 020740 178 GKPDAGFALFESESLKWPGFVEFDDV--NGKVLTYSAQDSIYKVFDLKNYTMLYS-------ISDKNVQEIKISPG-I-M 246 (322)
Q Consensus 178 gk~~~g~~LFe~~~L~~PgFVEFDdv--Ngkilty~aq~~~YrVfdlknYs~LYs-------Isde~VqEIkIS~G-i-m 246 (322)
++ .......-...--+.|+.. ++..++....++..++||+++-..+.. -....|..+.++|. - +
T Consensus 200 ~~-----~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 274 (357)
T 3i2n_A 200 MA-----LRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNREL 274 (357)
T ss_dssp TE-----EEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred Cc-----eeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcE
Confidence 22 1222222223345677764 666777778899999999998774332 45677888999874 3 3
Q ss_pred EEEEecCCCeeEEEEEEeecCcee-------------------eeeeeccccCCcchhhh--hccceeEE-EecCCceeE
Q 020740 247 LLIFTKASGHVPLKILSIEDGTVL-------------------KSFNHLLHRNKKVDFIE--QFNEKLLV-KQENENLQI 304 (322)
Q Consensus 247 ll~~q~~~~~iPlkIlsIedG~~l-------------------~~f~~~L~~sk~iqFiE--~f~EkLLI-KQE~~~LqI 304 (322)
++.- ...+ -++|+++.++... ..+. .+...|.=+. .-+..|++ =-++..++|
T Consensus 275 l~~~-~~dg--~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~s~~~d~~i~i 348 (357)
T 3i2n_A 275 FLTA-GGAG--GLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVT---LSTQPISSLDWSPDKRGLCVCSSFDQTVRV 348 (357)
T ss_dssp EEEE-ETTS--EEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEE---CCSSCEEEEEECSSSTTEEEEEETTSEEEE
T ss_pred EEEE-eCCC--cEEEeecCCCcccccccCCCCccccccccceeeccc---cCCCCeeEEEEcCCCCeEEEEecCCCcEEE
Confidence 3333 3333 3678888876533 2222 2233332221 22445664 678999999
Q ss_pred EEcccccc
Q 020740 305 LDVRISLF 312 (322)
Q Consensus 305 ~Dl~~~~~ 312 (322)
||+.+.+.
T Consensus 349 w~~~~~~~ 356 (357)
T 3i2n_A 349 LIVTKLNK 356 (357)
T ss_dssp EEECC---
T ss_pred EECCCccc
Confidence 99987543
No 68
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=96.56 E-value=0.083 Score=44.85 Aligned_cols=179 Identities=12% Similarity=0.142 Sum_probs=106.0
Q ss_pred ccccceeeecccccEEEEecCCCCceEEEEeeec-CCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceee--
Q 020740 113 QSGVCAAFCRETNQRICFLNVTADEVIRSLFYNK-NNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-- 189 (322)
Q Consensus 113 ~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk-~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~-- 189 (322)
..+.-..|+..+++....+.. +..-|.++-++. +.+.|++.+ .|. .++.-.+ ..++.. ..+..
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~~-h~~~v~~~~~s~~~~~~l~~~~---~dg--~i~iw~~-----~~~~~~---~~~~~~~ 86 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVERI-HGGGINTLDIEPVEGRYMLSGG---SDG--VIVLYDL-----ENSSRQ---SYYTCKA 86 (408)
T ss_dssp HHHHHHHHTEEECTTEEECCC-CSSCEEEEEECTTTCCEEEEEE---TTS--CEEEEEC-----CCCSSS---SCEEECE
T ss_pred ccCcceeeccccCcceeeeec-cCCcEEEEEEecCCCCEEEEEc---CCC--eEEEEEC-----CCCccc---ceEeccc
Confidence 334445666677777766655 667788898988 555555533 232 2332222 122111 11110
Q ss_pred ----------cccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec-ccceeeEEEcC----CEEEEEEecCC
Q 020740 190 ----------ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKISP----GIMLLIFTKAS 254 (322)
Q Consensus 190 ----------~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs-de~VqEIkIS~----Gimll~~q~~~ 254 (322)
..-...--+.|...++..++....++..++||+.+-+.+..+. ...+..+.+++ +.+++.-....
T Consensus 87 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (408)
T 4a11_B 87 VCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGP 166 (408)
T ss_dssp EEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSS
T ss_pred cccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCC
Confidence 0111122456777677777777889999999999988776665 34567777764 22433333322
Q ss_pred CeeEEEEEEeecCceeeeeeeccccCCcchhhhhc--cce-eEEEecCCceeEEEccccc
Q 020740 255 GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF--NEK-LLVKQENENLQILDVRISL 311 (322)
Q Consensus 255 ~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f--~Ek-LLIKQE~~~LqI~Dl~~~~ 311 (322)
-+.++++.+|+.+..+.. +..++.-+... +.+ |+.=-++..+++||+++.+
T Consensus 167 ---~v~~~d~~~~~~~~~~~~---~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~ 220 (408)
T 4a11_B 167 ---KVQLCDLKSGSCSHILQG---HRQEILAVSWSPRYDYILATASADSRVKLWDVRRAS 220 (408)
T ss_dssp ---SEEEEESSSSCCCEEECC---CCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSS
T ss_pred ---eEEEEeCCCcceeeeecC---CCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCC
Confidence 368899999998877652 23333333322 343 5566788999999998754
No 69
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=96.52 E-value=0.33 Score=42.90 Aligned_cols=188 Identities=15% Similarity=0.165 Sum_probs=110.8
Q ss_pred hhhhhhccccceeeecccccEEEEec----CCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCC
Q 020740 107 IVFALAQSGVCAAFCRETNQRICFLN----VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA 182 (322)
Q Consensus 107 iI~aL~~sG~c~af~r~tn~~iC~lN----~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~ 182 (322)
.++.-..-|.+..||..+++.+..+. ..+..-|.++-+|..+..++. +...|. .++. - +++.+. .
T Consensus 172 ~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~--sgs~D~--~v~~--w---d~~~~~--~ 240 (380)
T 3iz6_a 172 RLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFI--SGSCDT--TVRL--W---DLRITS--R 240 (380)
T ss_dssp CEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEE--EEETTS--CEEE--E---ETTTTC--C
T ss_pred EEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEE--EEECCC--eEEE--E---ECCCCC--c
Confidence 35555667899999999999998874 345567888888876665554 222333 2222 2 222111 0
Q ss_pred CCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccc---------eeeEEEcC-CEEEEEEec
Q 020740 183 GFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN---------VQEIKISP-GIMLLIFTK 252 (322)
Q Consensus 183 g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~---------VqEIkIS~-Gimll~~q~ 252 (322)
....|.. --..---+.|.. +|+.++-...|+..|+||+++-.++..+..+. |..+.++| |-+|+.--
T Consensus 241 ~~~~~~~-h~~~v~~v~~~p-~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~- 317 (380)
T 3iz6_a 241 AVRTYHG-HEGDINSVKFFP-DGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY- 317 (380)
T ss_dssp CCEEECC-CSSCCCEEEECT-TSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC-
T ss_pred ceEEECC-cCCCeEEEEEec-CCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEE-
Confidence 0001110 001122356665 45566666789999999999998887765432 55666764 44433322
Q ss_pred CCCeeEEEEEEeecCceeeeeeecc-ccCCcchhhhh--ccceeEEEecCCceeEEEcccc
Q 020740 253 ASGHVPLKILSIEDGTVLKSFNHLL-HRNKKVDFIEQ--FNEKLLVKQENENLQILDVRIS 310 (322)
Q Consensus 253 ~~~~iPlkIlsIedG~~l~~f~~~L-~~sk~iqFiE~--f~EkLLIKQE~~~LqI~Dl~~~ 310 (322)
..+ -++|.++.+|+.+..+.... .+...|-=+.. -+..|+-==.+..++|||+...
T Consensus 318 ~dg--~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 318 SNG--DCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp TTS--CEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred CCC--CEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 222 36788999999887764221 22333322221 2456666678999999999764
No 70
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=96.48 E-value=0.055 Score=48.70 Aligned_cols=198 Identities=13% Similarity=0.142 Sum_probs=120.3
Q ss_pred ceeEEeec--c-chhhhhhccccceeeecccccEEEEecC-CCCceEEEEeeecCCCe-EEEEEeEecCCCceeeeeeee
Q 020740 97 KIIEIVAA--R-DIVFALAQSGVCAAFCRETNQRICFLNV-TADEVIRSLFYNKNNDS-LITVSVYASDNFSSLRCRSTR 171 (322)
Q Consensus 97 ~V~EIv~a--~-diI~aL~~sG~c~af~r~tn~~iC~lN~-s~dEvIrSiFyNk~NdS-lItvSvy~sd~fS~LkCr~~~ 171 (322)
+|.-+-.. + .+|++=...|....||..+++..+.+.. .+..-|.+|-++..+.. |++. +.| .++++--
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~----s~D-~~v~iwd-- 193 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS----SME-GTTRLQD-- 193 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEE----CSS-SCEEEEE--
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEE----eCC-CEEEEee--
Confidence 35555442 3 3566667889999999999998888753 57778999988865544 4442 233 2344432
Q ss_pred hhhhHhCCCCCCCcceee-cccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcCC--EE
Q 020740 172 IEYIRRGKPDAGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPG--IM 246 (322)
Q Consensus 172 ~e~i~~gk~~~g~~LFe~-~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~G--im 246 (322)
++.+.+ ..+... ..-.|--.+.|+. +|+.++.-..++..++||+++ ..+..+. ...|..+.++|. .+
T Consensus 194 ---~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~ 265 (435)
T 4e54_B 194 ---FKGNIL---RVFASSDTINIWFCSLDVSA-SSRMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWF 265 (435)
T ss_dssp ---TTSCEE---EEEECCSSCSCCCCCEEEET-TTTEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSE
T ss_pred ---ccCCce---eEEeccCCCCccEEEEEECC-CCCEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceE
Confidence 211110 111111 1112333467765 456666667899999999976 3444443 466778888742 23
Q ss_pred EEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEEcccccc
Q 020740 247 LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDVRISLF 312 (322)
Q Consensus 247 ll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~~ 312 (322)
++.--. ... ++|+++.+++....+.....+...|.-+. .-+.+|+.--++..++|||+.+.+.
T Consensus 266 ~~s~s~-d~~--v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 266 LATASV-DQT--VKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC 330 (435)
T ss_dssp EEEEET-TSB--CCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSS
T ss_pred EEEecC-cce--eeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCcc
Confidence 333322 222 57889988887776654444455554332 2356788888999999999988654
No 71
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=96.45 E-value=0.15 Score=49.05 Aligned_cols=189 Identities=10% Similarity=0.065 Sum_probs=118.9
Q ss_pred chhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCc
Q 020740 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185 (322)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~ 185 (322)
.++++-...|.-+++|..|++.+-.+..... ++++-++.....|.+.| .| ..+ +..++.. .. +..
T Consensus 150 ~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~---~d--~~V--~v~D~~~-~t-----~~~ 214 (543)
T 1nir_A 150 LFSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIG---RD--ARI--DMIDLWA-KE-----PTK 214 (543)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEE---TT--SEE--EEEETTS-SS-----CEE
T ss_pred EEEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEEC---CC--CeE--EEEECcC-CC-----CcE
Confidence 4555666778889999999999998875544 89998898888777755 12 222 2222200 11 111
Q ss_pred ceeecccCCCCeEEecC----CCceEEEEecCCCeEEEEeccCcEEEEEecc------------c-ceeeEEEcC-CEEE
Q 020740 186 LFESESLKWPGFVEFDD----VNGKVLTYSAQDSIYKVFDLKNYTMLYSISD------------K-NVQEIKISP-GIML 247 (322)
Q Consensus 186 LFe~~~L~~PgFVEFDd----vNgkilty~aq~~~YrVfdlknYs~LYsIsd------------e-~VqEIkIS~-Giml 247 (322)
+-+-..-.+|-.+.|+. -...+.+.+..++.++|||..+.+++-.|+- + .+..|.+|+ |-.+
T Consensus 215 ~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~ 294 (543)
T 1nir_A 215 VAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 294 (543)
T ss_dssp EEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred EEEEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence 22212234688899987 4555666666689999999999999888863 1 577888885 3333
Q ss_pred EEEecCCCeeEEEEEEeecCceeeeeeeccccCC---cchhhhhccceeEEE-ecCCceeEEEccccccee
Q 020740 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK---KVDFIEQFNEKLLVK-QENENLQILDVRISLFLP 314 (322)
Q Consensus 248 l~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk---~iqFiE~f~EkLLIK-QE~~~LqI~Dl~~~~~~~ 314 (322)
++-....+ -+.+++..+++.+..... .... .+- +-.-+.++|+= +.+..+.+||+.+.+++.
T Consensus 295 ~vs~~~~g--~i~vvd~~~~~~l~~~~i--~~~~~~~~~~-~spdg~~l~va~~~~~~v~v~D~~tg~l~~ 360 (543)
T 1nir_A 295 IVNVKETG--KVLLVNYKDIDNLTVTSI--GAAPFLHDGG-WDSSHRYFMTAANNSNKVAVIDSKDRRLSA 360 (543)
T ss_dssp EEEETTTT--EEEEEECTTSSSCEEEEE--ECCSSCCCEE-ECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred EEEECCCC--eEEEEEecCCCcceeEEe--ccCcCccCce-ECCCCCEEEEEecCCCeEEEEECCCCeEEE
Confidence 34433333 356778877766552111 1111 111 12346678875 457799999999887654
No 72
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=96.42 E-value=0.35 Score=40.71 Aligned_cols=184 Identities=9% Similarity=0.089 Sum_probs=111.0
Q ss_pred hhhhhhccccceeeeccccc--EEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCC
Q 020740 107 IVFALAQSGVCAAFCRETNQ--RICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (322)
Q Consensus 107 iI~aL~~sG~c~af~r~tn~--~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~ 184 (322)
++++-...|....||..+++ .+..+. .+..-|.++-++.+.+.|++.| .|. .++.-.+ ..++.
T Consensus 22 ~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~---~dg--~i~vwd~-----~~~~~---- 86 (372)
T 1k8k_C 22 QIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCG---TDR--NAYVWTL-----KGRTW---- 86 (372)
T ss_dssp EEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEE---TTS--CEEEEEE-----ETTEE----
T ss_pred EEEEEeCCCEEEEEeCCCCcEEeeeeec-CCCCcccEEEEeCCCCEEEEEc---CCC--eEEEEEC-----CCCee----
Confidence 55555578999999999987 566665 4566788999998777676644 222 3333322 11110
Q ss_pred cceeecccCC---CCeEEecCCCceEEEEecCCCeEEEEeccCcE---EEEEec---ccceeeEEEcC-CEEEEEEecCC
Q 020740 185 ALFESESLKW---PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSIS---DKNVQEIKISP-GIMLLIFTKAS 254 (322)
Q Consensus 185 ~LFe~~~L~~---PgFVEFDdvNgkilty~aq~~~YrVfdlknYs---~LYsIs---de~VqEIkIS~-Gimll~~q~~~ 254 (322)
........+ .--+.|.. +|+.++....++..++||+.+-+ .+..+. ...|..+.++| |-+++.-.. .
T Consensus 87 -~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-d 163 (372)
T 1k8k_C 87 -KPTLVILRINRAARCVRWAP-NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC-D 163 (372)
T ss_dssp -EEEEECCCCSSCEEEEEECT-TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET-T
T ss_pred -eeeEEeecCCCceeEEEECC-CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC-C
Confidence 111111112 22456665 46667777789999999998865 233332 45688888884 444444332 2
Q ss_pred CeeEEEEEEe------------------ecCceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEEcccccce
Q 020740 255 GHVPLKILSI------------------EDGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 255 ~~iPlkIlsI------------------edG~~l~~f~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
+ -++++++ .+|+.+..+.. +...+.-+. .-+.+|+.=-++..+++||+.+.+.+
T Consensus 164 g--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 164 F--KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS---SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 237 (372)
T ss_dssp S--CEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC---CSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred C--CEEEEEcccccccccccccccccccchhhheEecCC---CCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence 2 2477884 46777776641 122222222 23457888889999999999887643
No 73
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=96.40 E-value=0.33 Score=40.51 Aligned_cols=197 Identities=11% Similarity=0.036 Sum_probs=113.8
Q ss_pred cccceeEEeec--cc-hhhhhhccccceeeec-ccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeee
Q 020740 94 KRSKIIEIVAA--RD-IVFALAQSGVCAAFCR-ETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRS 169 (322)
Q Consensus 94 kRS~V~EIv~a--~d-iI~aL~~sG~c~af~r-~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~ 169 (322)
....|.-+... .. .+++-...|....||. .+++...+-...+..-|.++-++. ++.|++.| .|. .++.
T Consensus 55 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~---~d~--~i~i-- 126 (342)
T 1yfq_A 55 YKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAAS---WDG--LIEV-- 126 (342)
T ss_dssp CSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEE---TTS--EEEE--
T ss_pred cCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEc---CCC--eEEE--
Confidence 34556666555 33 6777788899999999 888764332222667788899988 66666543 222 2222
Q ss_pred eehhhhHh---------CCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccC-cE----EEEEecccc
Q 020740 170 TRIEYIRR---------GKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN-YT----MLYSISDKN 235 (322)
Q Consensus 170 ~~~e~i~~---------gk~~~g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlkn-Ys----~LYsIsde~ 235 (322)
. +++. +++-.... .-..+--+.|++.. ++....++..++||+++ .. ....-.+..
T Consensus 127 w---d~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~---l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~ 195 (342)
T 1yfq_A 127 I---DPRNYGDGVIAVKNLNSNNTK-----VKNKIFTMDTNSSR---LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQ 195 (342)
T ss_dssp E---CHHHHTTBCEEEEESCSSSSS-----SCCCEEEEEECSSE---EEEEESTTEEEEEESSCCTTCCCEEEECSCSSC
T ss_pred E---cccccccccccccCCeeeEEe-----eCCceEEEEecCCc---EEEEeCCCeEEEEECCccccccceeeecCCCCc
Confidence 2 3333 33211111 01112234565332 55557789999999998 43 233333557
Q ss_pred eeeEEEcC--CEEEEEEecCCCeeEEEEEEeecC------ceeeeeeeccc---------cCCcchhhhhccceeEEEec
Q 020740 236 VQEIKISP--GIMLLIFTKASGHVPLKILSIEDG------TVLKSFNHLLH---------RNKKVDFIEQFNEKLLVKQE 298 (322)
Q Consensus 236 VqEIkIS~--Gimll~~q~~~~~iPlkIlsIedG------~~l~~f~~~L~---------~sk~iqFiE~f~EkLLIKQE 298 (322)
+..+.++| |-.++.-.. .+. ++|.++.++ +.+..+...-. .-..+.|-. -+.+|+.--+
T Consensus 196 i~~i~~~~~~~~~l~~~~~-dg~--i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~ 271 (342)
T 1yfq_A 196 IRDVALLPKEQEGYACSSI-DGR--VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGS 271 (342)
T ss_dssp EEEEEECSGGGCEEEEEET-TSE--EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEET
T ss_pred eeEEEECCCCCCEEEEEec-CCc--EEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcC-CCCEEEEecC
Confidence 88889986 655444433 333 566777766 55555542100 111233322 2456777778
Q ss_pred CCceeEEEcccccce
Q 020740 299 NENLQILDVRISLFL 313 (322)
Q Consensus 299 ~~~LqI~Dl~~~~~~ 313 (322)
+..+++||+.+.+.+
T Consensus 272 dg~i~vwd~~~~~~~ 286 (342)
T 1yfq_A 272 DGIISCWNLQTRKKI 286 (342)
T ss_dssp TSCEEEEETTTTEEE
T ss_pred CceEEEEcCccHhHh
Confidence 999999999987643
No 74
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=96.37 E-value=0.35 Score=40.23 Aligned_cols=194 Identities=8% Similarity=0.028 Sum_probs=109.2
Q ss_pred ccceeEEeecc-----chhhhhhccccceeeeccc-ccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeee
Q 020740 95 RSKIIEIVAAR-----DIVFALAQSGVCAAFCRET-NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCR 168 (322)
Q Consensus 95 RS~V~EIv~a~-----diI~aL~~sG~c~af~r~t-n~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr 168 (322)
...|.-+-... .++++-...|....||..+ ++.+...-..+..-|.++-++.+.+.|++.| .|. .++.-
T Consensus 39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~---~dg--~v~iw 113 (368)
T 3mmy_A 39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTAS---CDK--TAKMW 113 (368)
T ss_dssp SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEE---TTS--EEEEE
T ss_pred CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEc---CCC--cEEEE
Confidence 45566666654 4677777789999999988 6666344445667788899998766666543 232 33333
Q ss_pred eeehhhhHhCCCCCCCcceeecccCCCC---eEEec-CCCceEEEEecCCCeEEEEeccCcEEEEEeccc-ceeeEEEcC
Q 020740 169 STRIEYIRRGKPDAGFALFESESLKWPG---FVEFD-DVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKISP 243 (322)
Q Consensus 169 ~~~~e~i~~gk~~~g~~LFe~~~L~~Pg---FVEFD-dvNgkilty~aq~~~YrVfdlknYs~LYsIsde-~VqEIkIS~ 243 (322)
. +..++ .+.. ..+++ -+.|. ..+++.++....++..++||+++.+.+..+... .+..+...+
T Consensus 114 d-----~~~~~-----~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 180 (368)
T 3mmy_A 114 D-----LSSNQ-----AIQI---AQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY 180 (368)
T ss_dssp E-----TTTTE-----EEEE---EECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET
T ss_pred E-----cCCCC-----ceee---ccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC
Confidence 2 22222 1111 12333 34552 567787877888999999999988866655532 333444444
Q ss_pred CEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhh------ccceeEEEecCCceeEEEccccc
Q 020740 244 GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ------FNEKLLVKQENENLQILDVRISL 311 (322)
Q Consensus 244 Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~------f~EkLLIKQE~~~LqI~Dl~~~~ 311 (322)
..+++..... -+.++++.++......... +.......+-. ....++.--.+..++|||+....
T Consensus 181 ~~~~~~~~~~----~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~ 249 (368)
T 3mmy_A 181 PMAVVATAER----GLIVYQLENQPSEFRRIES-PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPN 249 (368)
T ss_dssp TEEEEEEGGG----CEEEEECSSSCEEEEECCC-SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSC
T ss_pred CeeEEEeCCC----cEEEEEeccccchhhhccc-cccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCC
Confidence 4333222211 2455666554433221110 00111111111 11227888899999999998763
No 75
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=96.35 E-value=0.17 Score=41.86 Aligned_cols=152 Identities=11% Similarity=0.097 Sum_probs=92.0
Q ss_pred chhhhhhccccceeeecccccEEEEecCCCCc-eEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCC
Q 020740 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADE-VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (322)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~~iC~lN~s~dE-vIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~ 184 (322)
+++++-...|.-.++|..|++.+..+...... -++++-++...+.+.+.+ +++ ..+. ..+ +..|+.-
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~---~~~-~~v~--~~d---~~~~~~~--- 69 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV---NKS-ESLV--KID---LVTGETL--- 69 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEE---TTT-TEEE--EEE---TTTCCEE---
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEe---CCC-CeEE--EEE---CCCCCeE---
Confidence 34555567788889999999988877654322 256677776665555432 111 1222 222 2222210
Q ss_pred cceeecc----cCCCCeEEecCCCceEEEEec-----------CCCeEEEEeccCcEEEEEec-ccceeeEEEc-CCEEE
Q 020740 185 ALFESES----LKWPGFVEFDDVNGKVLTYSA-----------QDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIML 247 (322)
Q Consensus 185 ~LFe~~~----L~~PgFVEFDdvNgkilty~a-----------q~~~YrVfdlknYs~LYsIs-de~VqEIkIS-~Giml 247 (322)
..+.... -..|.-+.|+.-...+.+.+. .++...+||+.+.+.+-.+. ...+..+.++ +|-.|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l 149 (337)
T 1pby_B 70 GRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKL 149 (337)
T ss_dssp EEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCE
T ss_pred eeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEE
Confidence 0011110 125778899875556655431 46899999999988776665 4567788888 45444
Q ss_pred EEEecCCCeeEEEEEEeecCceeeeee
Q 020740 248 LIFTKASGHVPLKILSIEDGTVLKSFN 274 (322)
Q Consensus 248 l~~q~~~~~iPlkIlsIedG~~l~~f~ 274 (322)
++. .+ -+.++++.+|+.+..+.
T Consensus 150 ~~~---~~--~i~~~d~~~~~~~~~~~ 171 (337)
T 1pby_B 150 YGL---GR--DLHVMDPEAGTLVEDKP 171 (337)
T ss_dssp EEE---SS--SEEEEETTTTEEEEEEC
T ss_pred EEe---CC--eEEEEECCCCcEeeeee
Confidence 444 22 37889999999887665
No 76
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=96.34 E-value=0.45 Score=41.16 Aligned_cols=195 Identities=15% Similarity=0.148 Sum_probs=109.1
Q ss_pred ceeEEeeccchhhhhhccccceeeeccccc--EEEEecCC-CCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehh
Q 020740 97 KIIEIVAARDIVFALAQSGVCAAFCRETNQ--RICFLNVT-ADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (322)
Q Consensus 97 ~V~EIv~a~diI~aL~~sG~c~af~r~tn~--~iC~lN~s-~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e 173 (322)
+|.-+-+..++++.-...|....||..++. .+..+... +..-|+++=++....-|++.| .|. .++.-.. +
T Consensus 16 ~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s---~D~--~v~iw~~--~ 88 (330)
T 2hes_X 16 KIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS---FDS--TVSIWAK--E 88 (330)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE---TTS--CEEEEEC---
T ss_pred ceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe---CCC--cEEEEEc--c
Confidence 444454555666666677889999988763 45567444 788899999998777666544 222 2333222 1
Q ss_pred hhHhCCCC--CCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEecc----CcEEEEEec--ccceeeEEEc
Q 020740 174 YIRRGKPD--AGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLK----NYTMLYSIS--DKNVQEIKIS 242 (322)
Q Consensus 174 ~i~~gk~~--~g~~LFe~~~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlk----nYs~LYsIs--de~VqEIkIS 242 (322)
.++.. ...++. .--.|.+ -+.|.. +|+.|+-...|+..++||+. .++++..+. ...|..+..+
T Consensus 89 ---~~~~~~~~~~~~~--~~~~h~~~V~~v~~sp-~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~ 162 (330)
T 2hes_X 89 ---ESADRTFEMDLLA--IIEGHENEVKGVAWSN-DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH 162 (330)
T ss_dssp ---------CCCEEEE--EEC----CEEEEEECT-TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred ---cCcCccccceeEE--EEcCCCCcEEEEEECC-CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence 11100 011110 0012333 345654 57777777789999999994 456666654 3568888887
Q ss_pred C-CEEEEEEecCCCeeEEEEEEeecC--ceeeeeeeccccCCcc---hhhhhc-cceeEEEecCCceeEEEcccc
Q 020740 243 P-GIMLLIFTKASGHVPLKILSIEDG--TVLKSFNHLLHRNKKV---DFIEQF-NEKLLVKQENENLQILDVRIS 310 (322)
Q Consensus 243 ~-Gimll~~q~~~~~iPlkIlsIedG--~~l~~f~~~L~~sk~i---qFiE~f-~EkLLIKQE~~~LqI~Dl~~~ 310 (322)
| |-+|+.-- ..+. ++|.++.++ +.+..+. .+...| .|-..- +..|..==++..+++||+.+.
T Consensus 163 p~~~~l~s~s-~D~~--i~iW~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 163 PSEALLASSS-YDDT--VRIWKDYDDDWECVAVLN---GHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp SSSSEEEEEE-TTSC--EEEEEEETTEEEEEEEEC---CCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred CCCCEEEEEc-CCCe--EEEEECCCCCeeEEEEcc---CCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 5 44433332 2222 577777766 4444443 122222 332221 123555568899999999764
No 77
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=96.30 E-value=0.14 Score=42.69 Aligned_cols=179 Identities=6% Similarity=-0.010 Sum_probs=108.1
Q ss_pred chhhhhhccccceeeeccccc----EEEEecCCCCceEEEEeeecCCC-eEEEEEeEecCCCceeeeeeeehhhhHhCCC
Q 020740 106 DIVFALAQSGVCAAFCRETNQ----RICFLNVTADEVIRSLFYNKNND-SLITVSVYASDNFSSLRCRSTRIEYIRRGKP 180 (322)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~----~iC~lN~s~dEvIrSiFyNk~Nd-SlItvSvy~sd~fS~LkCr~~~~e~i~~gk~ 180 (322)
..+++-...|....|+..+++ ..... .+..-|.++-++.+.. .|++.+ .|. .++.-.+. ..++.
T Consensus 24 ~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~---~dg--~i~~wd~~----~~~~~ 92 (342)
T 1yfq_A 24 SLLLITSWDGSLTVYKFDIQAKNVDLLQSL--RYKHPLLCCNFIDNTDLQIYVGT---VQG--EILKVDLI----GSPSF 92 (342)
T ss_dssp TEEEEEETTSEEEEEEEETTTTEEEEEEEE--ECSSCEEEEEEEESSSEEEEEEE---TTS--CEEEECSS----SSSSE
T ss_pred CEEEEEcCCCeEEEEEeCCCCccccceeee--ecCCceEEEEECCCCCcEEEEEc---CCC--eEEEEEec----cCCce
Confidence 456666677999999998888 55554 5667889999987766 565533 222 23222210 12211
Q ss_pred CCCCcceeecccC--CCC---eEEecCCCceEEEEecCCCeEEEEeccC---------cEEEEEe-cccceeeEEEcCCE
Q 020740 181 DAGFALFESESLK--WPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKN---------YTMLYSI-SDKNVQEIKISPGI 245 (322)
Q Consensus 181 ~~g~~LFe~~~L~--~Pg---FVEFDdvNgkilty~aq~~~YrVfdlkn---------Ys~LYsI-sde~VqEIkIS~Gi 245 (322)
...-. |.+ -+.|+. +..++....++..++||+++ .+++..+ ....+..+.++|..
T Consensus 93 --------~~~~~~~~~~~v~~l~~~~--~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 162 (342)
T 1yfq_A 93 --------QALTNNEANLGICRICKYG--DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR 162 (342)
T ss_dssp --------EECBSCCCCSCEEEEEEET--TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE
T ss_pred --------EeccccCCCCceEEEEeCC--CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEecCCc
Confidence 11111 333 457777 55666667899999999998 5544443 34567888888877
Q ss_pred EEEEEecCCCeeEEEEEEeec-CceeeeeeeccccCCc---chhhhhccceeEEEecCCceeEEEcccc
Q 020740 246 MLLIFTKASGHVPLKILSIED-GTVLKSFNHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRIS 310 (322)
Q Consensus 246 mll~~q~~~~~iPlkIlsIed-G~~l~~f~~~L~~sk~---iqFiE~f~EkLLIKQE~~~LqI~Dl~~~ 310 (322)
+ +.-... + -++++++.+ ++....... .+.... +.|...-+..+++--++..+++||+...
T Consensus 163 l-~~~~~d-~--~i~i~d~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 163 L-IVGMNN-S--QVQWFRLPLCEDDNGTIEE-SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp E-EEEEST-T--EEEEEESSCCTTCCCEEEE-CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred E-EEEeCC-C--eEEEEECCccccccceeee-cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 3 332222 2 367889988 765322221 122222 3333213567888889999999999775
No 78
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=96.12 E-value=0.19 Score=48.16 Aligned_cols=197 Identities=14% Similarity=0.186 Sum_probs=117.3
Q ss_pred cceeEEeecc--chhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehh
Q 020740 96 SKIIEIVAAR--DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (322)
Q Consensus 96 S~V~EIv~a~--diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e 173 (322)
..|..+.... .+++.-...|....||..+++.+..+.. +..-|.++-++..+..|++.| .+ .+++.-.+
T Consensus 431 ~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~-h~~~v~~~~~s~~~~~l~s~s----~D-~~i~iwd~--- 501 (694)
T 3dm0_A 431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVG-HTKDVLSVAFSLDNRQIVSAS----RD-RTIKLWNT--- 501 (694)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECTTSSCEEEEE----TT-SCEEEECT---
T ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeC-CCCCEEEEEEeCCCCEEEEEe----CC-CEEEEEEC---
Confidence 3455555543 3566666778999999999988887764 455678888888888777654 22 22222211
Q ss_pred hhHhCCCCCCCcceeecccCCCCe---EEecCCC-ceEEEEecCCCeEEEEeccCcEEEEEecc--cceeeEEEcC-CEE
Q 020740 174 YIRRGKPDAGFALFESESLKWPGF---VEFDDVN-GKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP-GIM 246 (322)
Q Consensus 174 ~i~~gk~~~g~~LFe~~~L~~PgF---VEFDdvN-gkilty~aq~~~YrVfdlknYs~LYsIsd--e~VqEIkIS~-Gim 246 (322)
. +. .........-.|.+. +.|.... +..++-...|+..+|||+++-+++..+.. ..|..+.++| |-+
T Consensus 502 --~-~~---~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~ 575 (694)
T 3dm0_A 502 --L-GE---CKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSL 575 (694)
T ss_dssp --T-SC---EEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSE
T ss_pred --C-CC---cceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCE
Confidence 0 00 000000001123332 4454432 24555567799999999999998877753 4578888885 444
Q ss_pred EEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhhc-cceeEEEecCCceeEEEccccccee
Q 020740 247 LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF-NEKLLVKQENENLQILDVRISLFLP 314 (322)
Q Consensus 247 ll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f-~EkLLIKQE~~~LqI~Dl~~~~~~~ 314 (322)
|+.-- ..+. ++|.++.+|+.+..+.. ...+.-+--. +.++|.--.+..++|||+.+.++..
T Consensus 576 l~sg~-~Dg~--i~iwd~~~~~~~~~~~~----~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~ 637 (694)
T 3dm0_A 576 CASGG-KDGV--VLLWDLAEGKKLYSLEA----NSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVE 637 (694)
T ss_dssp EEEEE-TTSB--CEEEETTTTEEEECCBC----SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEE
T ss_pred EEEEe-CCCe--EEEEECCCCceEEEecC----CCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChh
Confidence 33332 2332 68899999998876542 1222111111 3456666667789999999876643
No 79
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=96.12 E-value=0.44 Score=39.62 Aligned_cols=107 Identities=13% Similarity=0.131 Sum_probs=75.9
Q ss_pred eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec-ccceeeEEE--c-CCEEEEEEecCCCeeEEEEEEeecCceeee
Q 020740 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKI--S-PGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (322)
Q Consensus 197 FVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs-de~VqEIkI--S-~Gimll~~q~~~~~iPlkIlsIedG~~l~~ 272 (322)
-+.|.. +|+.++....++..++||+.+-+.+.... ...|..+.+ + +|.+++.--. .+ .++++++.+|+.+..
T Consensus 91 ~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~ 166 (368)
T 3mmy_A 91 DVCWSD-DGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSW-DK--TLKFWDTRSSNPMMV 166 (368)
T ss_dssp EEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEET-TS--EEEEECSSCSSCSEE
T ss_pred EEEECc-CCCEEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccC-CC--cEEEEECCCCcEEEE
Confidence 356766 66666666789999999999998665443 456888887 5 4444444333 33 378999999998887
Q ss_pred eeeccccCCcchhhhhccceeEEEecCCceeEEEccccc
Q 020740 273 FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISL 311 (322)
Q Consensus 273 f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~ 311 (322)
+.. + ..+--+......+++--.+..+++||+.+..
T Consensus 167 ~~~--~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 201 (368)
T 3mmy_A 167 LQL--P--ERCYCADVIYPMAVVATAERGLIVYQLENQP 201 (368)
T ss_dssp EEC--S--SCEEEEEEETTEEEEEEGGGCEEEEECSSSC
T ss_pred Eec--C--CCceEEEecCCeeEEEeCCCcEEEEEecccc
Confidence 763 2 2333355566788888899999999998753
No 80
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=96.03 E-value=0.32 Score=46.70 Aligned_cols=195 Identities=13% Similarity=0.216 Sum_probs=111.6
Q ss_pred ccceeEEeec--cchhhhhhccccceeeecccccEEEEec--CCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeee
Q 020740 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLN--VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRST 170 (322)
Q Consensus 95 RS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~lN--~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~ 170 (322)
...|..+-.. ...++.-...|....||..+........ ..+...|.++-++.+...-.++| ++.+ .+++.-
T Consensus 472 ~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s--~s~d-~~v~vw-- 546 (694)
T 3dm0_A 472 TKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVS--ASWD-KTVKVW-- 546 (694)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEE--EETT-SCEEEE--
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEE--EeCC-CeEEEE--
Confidence 3455555544 3456666677888888875443322222 23556788888877653222222 2223 223332
Q ss_pred ehhhhHhCCCCCCCcceeecccCCCCe---EEecCCCceEEEEecCCCeEEEEeccCcEEEEEeccc-ceeeEEEcCCEE
Q 020740 171 RIEYIRRGKPDAGFALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQEIKISPGIM 246 (322)
Q Consensus 171 ~~e~i~~gk~~~g~~LFe~~~L~~PgF---VEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde-~VqEIkIS~Gim 246 (322)
+++.+++ . ...-.|.+. +.|+. +|+.++-...|+..++||+.+-+.++++... .+..+.++|.-.
T Consensus 547 ---d~~~~~~-----~--~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~ 615 (694)
T 3dm0_A 547 ---NLSNCKL-----R--STLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCFSPNRY 615 (694)
T ss_dssp ---ETTTCCE-----E--EEECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEEEECCBCSSCEEEEEECSSSS
T ss_pred ---ECCCCcE-----E--EEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCceEEEecCCCcEEEEEEcCCCc
Confidence 2222221 1 111124443 45655 5677777778999999999999999988644 467777885433
Q ss_pred EEEEecCCCeeEEEEEEeecCceeeeeeeccccC-------------------CcchhhhhccceeEEEecCCceeEEEc
Q 020740 247 LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN-------------------KKVDFIEQFNEKLLVKQENENLQILDV 307 (322)
Q Consensus 247 ll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~s-------------------k~iqFiE~f~EkLLIKQE~~~LqI~Dl 307 (322)
++..-..+. ++|.++++++.+..+...+... ..+.| -.-+.+|+.==++..++|||+
T Consensus 616 ~l~~~~~~~---i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-spdg~~l~sgs~Dg~i~iW~i 691 (694)
T 3dm0_A 616 WLCAATEHG---IKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNW-SADGSTLFSGYTDGVIRVWGI 691 (694)
T ss_dssp EEEEEETTE---EEEEETTTTEEEEEECCCCC----------------CCCCEEEEEE-CTTSSEEEEEETTSEEEEEEC
T ss_pred EEEEEcCCC---EEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEE-cCCCCEEEEEcCCCeEEEEec
Confidence 333322222 8999999999998775322110 01111 122566777778999999998
Q ss_pred cc
Q 020740 308 RI 309 (322)
Q Consensus 308 ~~ 309 (322)
..
T Consensus 692 ~~ 693 (694)
T 3dm0_A 692 GR 693 (694)
T ss_dssp --
T ss_pred cC
Confidence 64
No 81
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=95.96 E-value=0.3 Score=43.97 Aligned_cols=158 Identities=13% Similarity=0.099 Sum_probs=93.6
Q ss_pred eEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceee-cccCCCCeEEecCCCceEEEEecCCCe
Q 020740 138 VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSI 216 (322)
Q Consensus 138 vIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~-~~L~~PgFVEFDdvNgkilty~aq~~~ 216 (322)
-|.++=++..+..|+.++ ..|. .++.-.+... .|+. ...+.. ..-..+--+.|+.. |+.++....++.
T Consensus 104 ~v~~~~~s~d~~~l~~~~--~~dg--~v~iwd~~~~---~~~~---~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~~g~ 172 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACA--DSDK--SLLVFDVDKT---SKNV---LKLRKRFCFSKRPNAISIAED-DTTVIIADKFGD 172 (450)
T ss_dssp CEEEEEECTTSSEEEEEE--GGGT--EEEEEEECSS---SSSC---EEEEEEEECSSCEEEEEECTT-SSEEEEEETTSE
T ss_pred ceEEEEEcCCCCEEEEEE--CCCC--eEEEEECcCC---CCce---eeeeecccCCCCceEEEEcCC-CCEEEEEeCCCc
Confidence 588998888777664422 1232 2333322100 1211 112221 11233446788764 455555556889
Q ss_pred EEEEeccCcEE------EEEecccceeeEEEcC----CEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCC---cc
Q 020740 217 YKVFDLKNYTM------LYSISDKNVQEIKISP----GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK---KV 283 (322)
Q Consensus 217 YrVfdlknYs~------LYsIsde~VqEIkIS~----Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk---~i 283 (322)
.++||+.+... .+.-....|..+.++| |-+|+.--. ... ++|.++.+|+.+..+.. .+.. .+
T Consensus 173 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~-d~~--i~vwd~~~~~~~~~~~~--~h~~~v~~~ 247 (450)
T 2vdu_B 173 VYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR-DEH--IKISHYPQCFIVDKWLF--GHKHFVSSI 247 (450)
T ss_dssp EEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET-TSC--EEEEEESCTTCEEEECC--CCSSCEEEE
T ss_pred EEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC-CCc--EEEEECCCCceeeeeec--CCCCceEEE
Confidence 99999988764 2333456788899987 445444433 333 68899999998876431 2233 34
Q ss_pred hhhhhccceeEEEecCCceeEEEcccccce
Q 020740 284 DFIEQFNEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 284 qFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
.|- -+.+|+.--.+..+++||+.+.+.+
T Consensus 248 ~~s--d~~~l~s~~~d~~v~vwd~~~~~~~ 275 (450)
T 2vdu_B 248 CCG--KDYLLLSAGGDDKIFAWDWKTGKNL 275 (450)
T ss_dssp EEC--STTEEEEEESSSEEEEEETTTCCEE
T ss_pred EEC--CCCEEEEEeCCCeEEEEECCCCcEe
Confidence 554 4567777778999999999987643
No 82
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=95.90 E-value=0.65 Score=41.35 Aligned_cols=108 Identities=14% Similarity=0.092 Sum_probs=67.0
Q ss_pred EEecCCCceEEEE-e-cCCCeEEEEeccCcEEEEEeccc-ceeeEEEc-CCEEEEEEec-CCCeeEEEEEEeecCceeee
Q 020740 198 VEFDDVNGKVLTY-S-AQDSIYKVFDLKNYTMLYSISDK-NVQEIKIS-PGIMLLIFTK-ASGHVPLKILSIEDGTVLKS 272 (322)
Q Consensus 198 VEFDdvNgkilty-~-aq~~~YrVfdlknYs~LYsIsde-~VqEIkIS-~Gimll~~q~-~~~~iPlkIlsIedG~~l~~ 272 (322)
+.|+...+.+++- . ..|++.+|||+.+-.++..+... .+..+..+ ++-.++..-. ..+ -++|+++.+|+.+..
T Consensus 282 ~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~--~I~iwd~~~~~~v~~ 359 (420)
T 4gga_A 282 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQN--QLVIWKYPTMAKVAE 359 (420)
T ss_dssp EEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTC--CEEEEETTTCCEEEE
T ss_pred eeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCC--EEEEEECCCCcEEEE
Confidence 4566666666543 2 36899999999999988877632 22222222 2222222221 222 268899999999988
Q ss_pred eeeccccCCcchhhhhc--cceeEEEecCCceeEEEcccc
Q 020740 273 FNHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRIS 310 (322)
Q Consensus 273 f~~~L~~sk~iqFiE~f--~EkLLIKQE~~~LqI~Dl~~~ 310 (322)
+. .+...|--+... +.+|.-==+|+.++||||...
T Consensus 360 l~---gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 360 LK---GHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp EC---CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred Ec---CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 75 234555434322 445665668999999999763
No 83
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=95.81 E-value=0.55 Score=41.48 Aligned_cols=199 Identities=10% Similarity=0.185 Sum_probs=111.8
Q ss_pred ccceeEEeec--cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020740 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (322)
Q Consensus 95 RS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~ 172 (322)
..+|.-+-.. ...++.-...|....||..+++.+..+...... |.++-++.+...|++.| .+ . .|+.-++
T Consensus 66 ~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~-v~~~~~s~~g~~las~~----~d-~--~v~iw~~ 137 (380)
T 3iz6_a 66 SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPW-VMECAFAPNGQSVACGG----LD-S--ACSIFNL 137 (380)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTT-CCCCEECTTSSEEEECC----SS-S--CCEEEEC
T ss_pred ccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCC-EEEEEECCCCCEEEEee----CC-C--cEEEEEC
Confidence 3455555554 346676777899999999999999888765554 55666777766665532 22 1 2222222
Q ss_pred hhh--HhCCCCCCCcceeecccCCCCeE---EecCCCceEEEEecCCCeEEEEeccCcEEEEEec-------ccceeeEE
Q 020740 173 EYI--RRGKPDAGFALFESESLKWPGFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-------DKNVQEIK 240 (322)
Q Consensus 173 e~i--~~gk~~~g~~LFe~~~L~~PgFV---EFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs-------de~VqEIk 240 (322)
..- ..|. .++ ....-.|.|+| .|...++..++-...|+..++||+.+-+.+..+. ...|..+.
T Consensus 138 ~~~~~~~~~----~~~-~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~ 212 (380)
T 3iz6_a 138 SSQADRDGN----MPV-SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS 212 (380)
T ss_dssp CCCSSCCCS----STT-CCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEE
T ss_pred CCCccccCC----ccc-eeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEE
Confidence 110 1111 111 11112233333 3444444444445679999999999988776652 23455666
Q ss_pred Ec--CCEEEEEEecCCCeeEEEEEEee-cCceeeeeeeccccCCcchhhhh--ccceeEEEecCCceeEEEcccccc
Q 020740 241 IS--PGIMLLIFTKASGHVPLKILSIE-DGTVLKSFNHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVRISLF 312 (322)
Q Consensus 241 IS--~Gimll~~q~~~~~iPlkIlsIe-dG~~l~~f~~~L~~sk~iqFiE~--f~EkLLIKQE~~~LqI~Dl~~~~~ 312 (322)
++ ++-+++.--.- . -++|.++. +++.+..+. .+...|.-+.- -+.+|+.=-++..+++||+++.+.
T Consensus 213 ~~~~~~~~l~sgs~D-~--~v~~wd~~~~~~~~~~~~---~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~ 283 (380)
T 3iz6_a 213 INSLNANMFISGSCD-T--TVRLWDLRITSRAVRTYH---GHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQ 283 (380)
T ss_dssp ECSSSCCEEEEEETT-S--CEEEEETTTTCCCCEEEC---CCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEE
T ss_pred eecCCCCEEEEEECC-C--eEEEEECCCCCcceEEEC---CcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcE
Confidence 64 34443332222 2 25778887 445554443 12333322221 245677777999999999998653
No 84
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=95.74 E-value=0.75 Score=38.52 Aligned_cols=183 Identities=14% Similarity=0.173 Sum_probs=108.8
Q ss_pred cceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCC-CcceeecccCC
Q 020740 116 VCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG-FALFESESLKW 194 (322)
Q Consensus 116 ~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g-~~LFe~~~L~~ 194 (322)
...+||..+++.+..+.... -.+++-++...+.|++.+ . .++ ..+....+. ..|++-.. .... ..-..
T Consensus 109 ~i~v~d~~~~~~~~~~~~~~--~~~~~~~spdg~~l~~~~-~-~~~-~~i~~~~~~----~~g~~~~~~~~~~--~~~~~ 177 (331)
T 3u4y_A 109 NMQSYSFLKNKFISTIPIPY--DAVGIAISPNGNGLILID-R-SSA-NTVRRFKID----ADGVLFDTGQEFI--SGGTR 177 (331)
T ss_dssp EEEEEETTTTEEEEEEECCT--TEEEEEECTTSSCEEEEE-E-TTT-TEEEEEEEC----TTCCEEEEEEEEE--CSSSS
T ss_pred cEEEEECCCCCeEEEEECCC--CccceEECCCCCEEEEEe-c-CCC-ceEEEEEEC----CCCcEeecCCccc--cCCCC
Confidence 77888888888877766533 347888887776665532 1 112 113332221 01111000 0001 12245
Q ss_pred CCeEEecCCCceEEEEecCCCeEEEEeccCcEE---EEEecc-cceeeEEEc-CCEEEEEEecCCCeeEEEEEEeecCce
Q 020740 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM---LYSISD-KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTV 269 (322)
Q Consensus 195 PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~---LYsIsd-e~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~ 269 (322)
|--+.|+.-...+++.+..++..++||+++-+. +..+.. ..+..+.++ +|-.|++.....+. +.++++++|+.
T Consensus 178 ~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~--i~~~d~~~~~~ 255 (331)
T 3u4y_A 178 PFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVD--VFNFNQLSGTL 255 (331)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEE--EEEEETTTTEE
T ss_pred ccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCE--EEEEECCCCce
Confidence 777888876556777777899999999998887 777754 456778888 46655555554444 66799999988
Q ss_pred --eeeeeec--cccCC-----cchhhhhccceeEEEec-CCceeEEEcccccc
Q 020740 270 --LKSFNHL--LHRNK-----KVDFIEQFNEKLLVKQE-NENLQILDVRISLF 312 (322)
Q Consensus 270 --l~~f~~~--L~~sk-----~iqFiE~f~EkLLIKQE-~~~LqI~Dl~~~~~ 312 (322)
+..+..- +.... .+.| -.=+.+|++--. +..+.|||+.....
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~-spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 256 SFVKSFGHGLLIDPRPLFGANQMAL-NKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp EEEEEEECCCCCCCGGGTTCCCEEE-CTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred eeecccccccccCCCCcccccceEE-CCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 4444321 11110 0111 123567877654 56899999987654
No 85
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=95.71 E-value=0.73 Score=38.14 Aligned_cols=185 Identities=10% Similarity=0.038 Sum_probs=103.8
Q ss_pred hccccceeeecc-cccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceeec
Q 020740 112 AQSGVCAAFCRE-TNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESE 190 (322)
Q Consensus 112 ~~sG~c~af~r~-tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~~ 190 (322)
...|...+|+.. +++....--.....-+.++-++...+.|++++ .++ ..++...+.. ..|++ ..+-.-.
T Consensus 12 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~---~~~-~~v~~~~~~~---~~~~~---~~~~~~~ 81 (343)
T 1ri6_A 12 PESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGV---RPE-FRVLAYRIAP---DDGAL---TFAAESA 81 (343)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEE---TTT-TEEEEEEECT---TTCCE---EEEEEEE
T ss_pred CCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEee---cCC-CeEEEEEecC---CCCce---eeccccc
Confidence 456777788763 44333322122344566677776666555533 121 2344333321 01111 1111111
Q ss_pred ccCCCCeEEecCCCceEEEEecCCCeEEEEec---cCcEEEEEecc-cceeeEEEcC-CEEEEEEecCCCeeEEEEEEee
Q 020740 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDL---KNYTMLYSISD-KNVQEIKISP-GIMLLIFTKASGHVPLKILSIE 265 (322)
Q Consensus 191 ~L~~PgFVEFDdvNgkilty~aq~~~YrVfdl---knYs~LYsIsd-e~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIe 265 (322)
.-..|..+.|+.-...+++.+..++...+||+ +....+-.+.. ..+..+.++| |-.+++.....+. +.++++.
T Consensus 82 ~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~--v~~~d~~ 159 (343)
T 1ri6_A 82 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDR--ICLFTVS 159 (343)
T ss_dssp CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTE--EEEEEEC
T ss_pred cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCE--EEEEEec
Confidence 12378899998877778777777999999999 66666666653 4578888985 4444555433333 6788998
Q ss_pred c-Cceeeee--eeccccCCc---chhhhhccceeEEEe-cCCceeEEEccc
Q 020740 266 D-GTVLKSF--NHLLHRNKK---VDFIEQFNEKLLVKQ-ENENLQILDVRI 309 (322)
Q Consensus 266 d-G~~l~~f--~~~L~~sk~---iqFiE~f~EkLLIKQ-E~~~LqI~Dl~~ 309 (322)
+ |+..... ....+.... +.| -.-+.+|++-. .+..+.+||+..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~pdg~~l~~~~~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 160 DDGHLVAQDPAEVTTVEGAGPRHMVF-HPNEQYAYCVNELNSSVDVWELKD 209 (343)
T ss_dssp TTSCEEEEEEEEEECSTTCCEEEEEE-CTTSSEEEEEETTTTEEEEEESSC
T ss_pred CCCceeeecccccccCCCCCcceEEE-CCCCCEEEEEeCCCCEEEEEEecC
Confidence 7 7654322 222222222 222 22355677665 778899999953
No 86
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.69 E-value=0.59 Score=47.39 Aligned_cols=121 Identities=9% Similarity=0.162 Sum_probs=75.3
Q ss_pred ccceeEEeec--cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020740 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (322)
Q Consensus 95 RS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~ 172 (322)
...|.-+.+. ..++++-...|....||..|++.+..+.. +..-|.++-++...+..+++|. +.+ ..++.-
T Consensus 657 ~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~sg--~~d-~~v~vw---- 728 (1249)
T 3sfz_A 657 EDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDE-HSEQVNCCHFTNKSNHLLLATG--SND-FFLKLW---- 728 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-CSSCEEEEEECSSSSCCEEEEE--ETT-SCEEEE----
T ss_pred CCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcC-CCCcEEEEEEecCCCceEEEEE--eCC-CeEEEE----
Confidence 4556666655 34677777889999999999999998875 4556677777766565555442 333 222222
Q ss_pred hhhHhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec
Q 020740 173 EYIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 232 (322)
Q Consensus 173 e~i~~gk~~~g~~LFe~~~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs 232 (322)
++..|+ .+..- ..|.+ -+.|.. +|+.++....|+..++||+.+-..+..+.
T Consensus 729 -d~~~~~-----~~~~~--~~h~~~v~~~~~sp-~~~~l~s~s~dg~v~vwd~~~~~~~~~~~ 782 (1249)
T 3sfz_A 729 -DLNQKE-----CRNTM--FGHTNSVNHCRFSP-DDELLASCSADGTLRLWDVRSANERKSIN 782 (1249)
T ss_dssp -ETTSSS-----EEEEE--CCCSSCEEEEEECS-STTEEEEEESSSEEEEEEGGGTEEEEEEE
T ss_pred -ECCCcc-----hhhee--cCCCCCEEEEEEec-CCCEEEEEECCCeEEEEeCCCCcccceec
Confidence 222222 11111 12333 345665 55666667789999999999888776664
No 87
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=95.68 E-value=0.16 Score=45.79 Aligned_cols=200 Identities=14% Similarity=0.110 Sum_probs=115.0
Q ss_pred cccceeEEeecc---chhhhhhccccceeeeccc----------ccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecC
Q 020740 94 KRSKIIEIVAAR---DIVFALAQSGVCAAFCRET----------NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASD 160 (322)
Q Consensus 94 kRS~V~EIv~a~---diI~aL~~sG~c~af~r~t----------n~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd 160 (322)
....|.-+-+.. .++++-...|...+|+..+ .+.+..+.....+ |.+|=++..+..++.++ ..|
T Consensus 127 h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~l~s~--~~d 203 (430)
T 2xyi_A 127 HEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKE-GYGLSWNPNLNGYLLSA--SDD 203 (430)
T ss_dssp ESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSC-CCCEEECTTSTTEEEEE--CTT
T ss_pred CCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCC-eEEEEeCCCCCCeEEEE--eCC
Confidence 344555555543 4677777889999999887 5667777655444 56677776666344322 122
Q ss_pred CCceeeeeeeehhhhHhCCCCCCCccee--ecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCc---EEEEEe-
Q 020740 161 NFSSLRCRSTRIEYIRRGKPDAGFALFE--SESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNY---TMLYSI- 231 (322)
Q Consensus 161 ~fS~LkCr~~~~e~i~~gk~~~g~~LFe--~~~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlknY---s~LYsI- 231 (322)
. .++..+++ .++. ...... .....|.+ -+.|...++.+++....++..++||+++- ..+..+
T Consensus 204 g----~i~vwd~~---~~~~--~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~ 274 (430)
T 2xyi_A 204 H----TICLWDIN---ATPK--EHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVD 274 (430)
T ss_dssp S----CEEEEETT---SCCB--GGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEE
T ss_pred C----eEEEEeCC---CCCC--CCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEee
Confidence 2 22223222 2110 000110 00112332 36788778889988889999999999976 344444
Q ss_pred -cccceeeEEEcCCE--EEEEEecCCCeeEEEEEEeec-CceeeeeeeccccCCcchhhhhccce-eEEEecCCceeEEE
Q 020740 232 -SDKNVQEIKISPGI--MLLIFTKASGHVPLKILSIED-GTVLKSFNHLLHRNKKVDFIEQFNEK-LLVKQENENLQILD 306 (322)
Q Consensus 232 -sde~VqEIkIS~Gi--mll~~q~~~~~iPlkIlsIed-G~~l~~f~~~L~~sk~iqFiE~f~Ek-LLIKQE~~~LqI~D 306 (322)
....|.-|.++|.- +++.-.. .+. ++|+++.+ ++++..+..--..-..+.|-. .++. |+.=-.+..+.|||
T Consensus 275 ~~~~~v~~i~~~p~~~~~l~tg~~-dg~--v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp-~~~~~l~s~~~d~~i~iwd 350 (430)
T 2xyi_A 275 AHTAEVNCLSFNPYSEFILATGSA-DKT--VALWDLRNLKLKLHSFESHKDEIFQVQWSP-HNETILASSGTDRRLHVWD 350 (430)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEET-TSE--EEEEETTCTTSCSEEEECCSSCEEEEEECS-SCTTEEEEEETTSCCEEEE
T ss_pred cCCCCeEEEEeCCCCCCEEEEEeC-CCe--EEEEeCCCCCCCeEEeecCCCCEEEEEECC-CCCCEEEEEeCCCcEEEEe
Confidence 45668888888632 3333332 333 78899887 556666552111112233221 2344 55556888999999
Q ss_pred ccc
Q 020740 307 VRI 309 (322)
Q Consensus 307 l~~ 309 (322)
+.+
T Consensus 351 ~~~ 353 (430)
T 2xyi_A 351 LSK 353 (430)
T ss_dssp GGG
T ss_pred CCC
Confidence 988
No 88
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=95.65 E-value=0.16 Score=43.44 Aligned_cols=184 Identities=11% Similarity=0.112 Sum_probs=103.1
Q ss_pred chhhhhhccccceeeecccc--cEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCC
Q 020740 106 DIVFALAQSGVCAAFCRETN--QRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG 183 (322)
Q Consensus 106 diI~aL~~sG~c~af~r~tn--~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g 183 (322)
.+++.-...|....||..++ +.+..+. .+..-|.++=++...+-|++.| .|. .++. =++..|+. -
T Consensus 24 ~~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s---~d~--~v~v-----wd~~~~~~--~ 90 (377)
T 3dwl_C 24 TEFVTTTATNQVELYEQDGNGWKHARTFS-DHDKIVTCVDWAPKSNRIVTCS---QDR--NAYV-----YEKRPDGT--W 90 (377)
T ss_dssp SEEECCCSSSCBCEEEEETTEEEECCCBC-CCSSCEEEEEECTTTCCEEEEE---TTS--SEEE-----C------C--C
T ss_pred CEEEEecCCCEEEEEEccCCceEEEEEEe-cCCceEEEEEEeCCCCEEEEEe---CCC--eEEE-----EEcCCCCc--e
Confidence 34445557889999999988 4555554 4566788888888777666644 232 2222 23333330 0
Q ss_pred CcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcE---EEEEec---ccceeeEEEcC-CEEEEEEecC
Q 020740 184 FALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYT---MLYSIS---DKNVQEIKISP-GIMLLIFTKA 253 (322)
Q Consensus 184 ~~LFe~~~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlknYs---~LYsIs---de~VqEIkIS~-Gimll~~q~~ 253 (322)
.+... ...|.+ -+.|.. +|+.++....++..++||+.+-+ ++..+. ...|..+.++| |-+|+.--..
T Consensus 91 ~~~~~--~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d 167 (377)
T 3dwl_C 91 KQTLV--LLRLNRAATFVRWSP-NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCAD 167 (377)
T ss_dssp CCEEE--CCCCSSCEEEEECCT-TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESS
T ss_pred eeeeE--ecccCCceEEEEECC-CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCC
Confidence 01111 111222 345655 56677777789999999999876 466664 45688888885 4444443332
Q ss_pred CCeeEEEEEEeec------------------CceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEEcccccc
Q 020740 254 SGHVPLKILSIED------------------GTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDVRISLF 312 (322)
Q Consensus 254 ~~~iPlkIlsIed------------------G~~l~~f~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~~ 312 (322)
+. ++|+++.+ |+.+..+ .+...+.-+. .-+.+|+.=-++..+++||+.+.+.
T Consensus 168 -~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 168 -RK--AYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY----PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp -SC--EEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC----CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred -CE--EEEEEEEecccCCCccccccccccchhhhhhcc----cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence 22 67888853 4444443 2233332222 1245677777899999999998775
No 89
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=95.61 E-value=0.5 Score=41.55 Aligned_cols=175 Identities=12% Similarity=0.191 Sum_probs=102.1
Q ss_pred hhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCC--CeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCC
Q 020740 107 IVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNN--DSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGF 184 (322)
Q Consensus 107 iI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~N--dSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~ 184 (322)
.++.-...|.+..||..+++.+..+...... |.++-++... +.+++.| .|. .+ +.- +++.|+.
T Consensus 168 ~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~-v~~~~~~~~~~g~~l~sgs---~Dg--~v--~~w---d~~~~~~---- 232 (354)
T 2pbi_B 168 QILTASGDGTCALWDVESGQLLQSFHGHGAD-VLCLDLAPSETGNTFVSGG---CDK--KA--MVW---DMRSGQC---- 232 (354)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSC-EEEEEECCCSSCCEEEEEE---TTS--CE--EEE---ETTTCCE----
T ss_pred EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCC-eEEEEEEeCCCCCEEEEEe---CCC--eE--EEE---ECCCCcE----
Confidence 4556667789999999999998888755444 5556555433 3444422 232 12 222 3333331
Q ss_pred cceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEeccc----ceeeEEEcC-CEEEEEEecCCCe
Q 020740 185 ALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK----NVQEIKISP-GIMLLIFTKASGH 256 (322)
Q Consensus 185 ~LFe~~~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde----~VqEIkIS~-Gimll~~q~~~~~ 256 (322)
+..- -.|++ -+.|.. +|..++-...|+..|+||+++...+.....+ .+..+.++| |-+|+.--.. +
T Consensus 233 -~~~~--~~h~~~v~~v~~~p-~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d-~- 306 (354)
T 2pbi_B 233 -VQAF--ETHESDVNSVRYYP-SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYND-Y- 306 (354)
T ss_dssp -EEEE--CCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETT-S-
T ss_pred -EEEe--cCCCCCeEEEEEeC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECC-C-
Confidence 1110 11333 345655 4555555668999999999998877666544 345666763 4444443322 2
Q ss_pred eEEEEEEeecCceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEE
Q 020740 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILD 306 (322)
Q Consensus 257 iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~D 306 (322)
-++|.++.+|+.+..+. .+..+|-=+. .-+.+|..==.+..++|||
T Consensus 307 -~i~vwd~~~~~~~~~l~---~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 307 -TINVWDVLKGSRVSILF---GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp -CEEEEETTTCSEEEEEC---CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred -cEEEEECCCCceEEEEE---CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 36889999999887654 2233332121 1245666667888898886
No 90
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=95.60 E-value=0.097 Score=47.07 Aligned_cols=183 Identities=13% Similarity=0.158 Sum_probs=93.5
Q ss_pred hhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceeec
Q 020740 111 LAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESE 190 (322)
Q Consensus 111 L~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~~ 190 (322)
-...|....||.. ++.+..+. .+..-|.+|=++..++.++.+ ...|. .+ .+=+++.++..... ..
T Consensus 227 g~~dg~i~~wd~~-~~~~~~~~-~h~~~v~~v~~~p~~~~~~~s--~s~d~--~v-----~iwd~~~~~~~~~~--~~-- 291 (435)
T 4e54_B 227 GDNVGNVILLNMD-GKELWNLR-MHKKKVTHVALNPCCDWFLAT--ASVDQ--TV-----KIWDLRQVRGKASF--LY-- 291 (435)
T ss_dssp ECSSSBEEEEESS-SCBCCCSB-CCSSCEEEEEECTTCSSEEEE--EETTS--BC-----CEEETTTCCSSSCC--SB--
T ss_pred EeCCCcEeeeccC-cceeEEEe-cccceEEeeeecCCCceEEEE--ecCcc--ee-----eEEecccccccceE--EE--
Confidence 3344555555543 33333332 234567888888776666542 22333 12 22234443321111 10
Q ss_pred ccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEeccccee------eEEE--c-CCEEEEEE-ecCCCe-
Q 020740 191 SLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQ------EIKI--S-PGIMLLIF-TKASGH- 256 (322)
Q Consensus 191 ~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~Vq------EIkI--S-~Gimll~~-q~~~~~- 256 (322)
...|.+ -+.|+. +|+.|+-...|+..+|||+.+..++..+....-+ -++. + ++-++++. .+....
T Consensus 292 ~~~h~~~v~~~~~sp-dg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 370 (435)
T 4e54_B 292 SLPHRHPVNAACFSP-DGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFK 370 (435)
T ss_dssp CCBCSSCEEECCBCT-TSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSC
T ss_pred eeeccccccceeECC-CCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeE
Confidence 011222 234554 5666666778999999999999877776432211 1111 1 22222222 221111
Q ss_pred -------eEEEEEEeecCceeeeeeeccccCCcchhhhhc--cceeEEEecCCceeEEEccccc
Q 020740 257 -------VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRISL 311 (322)
Q Consensus 257 -------iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f--~EkLLIKQE~~~LqI~Dl~~~~ 311 (322)
=.++|+++++|+.+..+.. ++...|--+-.| ..++|+==.+..++|||+...+
T Consensus 371 ~~~~~~~~~i~iwd~~~g~~~~~l~~--~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~gk 432 (435)
T 4e54_B 371 SCTPYELRTIDVFDGNSGKMMCQLYD--PESSGISSLNEFNPMGDTLASAMGYHILIWSQQEAR 432 (435)
T ss_dssp CSSTTCCCCEEEECSSSCCEEEEECC--SSCCCCCCEEEECTTSSCEEEECSSEEEECCCC---
T ss_pred EEEecCCCEEEEEECCCCcEEEEEeC--CCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcCe
Confidence 1478999999999887642 334443322222 2345665667899999997654
No 91
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=95.57 E-value=0.72 Score=40.56 Aligned_cols=106 Identities=9% Similarity=0.070 Sum_probs=70.2
Q ss_pred CCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc-cceeeEEEcCCEEEEEEecCCCeeEEEEEEeecC-ceeee
Q 020740 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDG-TVLKS 272 (322)
Q Consensus 195 PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsd-e~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG-~~l~~ 272 (322)
-+.+++...+..+......++..++||+++-+++.++.. ..|..+.+++..+++... + -++|+++.++ +.+..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~---~--~i~i~d~~~~~~~~~~ 135 (355)
T 3vu4_A 61 LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYG---D--VISVFKFGNPWKRITD 135 (355)
T ss_dssp CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSSEEEEEET---T--EEEEEESSTTCCBSSC
T ss_pred eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCCEEEEEEc---C--EEEEEECCCCceeeEE
Confidence 455676655555545556678999999999998877753 468889999887766543 2 2789999998 66665
Q ss_pred eeeccccCCcchhhhhccceeEEE--ecCCceeEEEccccc
Q 020740 273 FNHLLHRNKKVDFIEQFNEKLLVK--QENENLQILDVRISL 311 (322)
Q Consensus 273 f~~~L~~sk~iqFiE~f~EkLLIK--QE~~~LqI~Dl~~~~ 311 (322)
+.. +..-.. + ...+|.+- ..+..+++||+.+.+
T Consensus 136 ~~~---~~~~~~-~--s~~~la~~sg~~~g~v~iwd~~~~~ 170 (355)
T 3vu4_A 136 DIR---FGGVCE-F--SNGLLVYSNEFNLGQIHITKLQSSG 170 (355)
T ss_dssp CEE---EEEEEE-E--ETTEEEEEESSCTTCEEEEECCC--
T ss_pred ecc---CCceEE-E--EccEEEEeCCCcCcEEEEEECCCCC
Confidence 543 111111 1 11556663 678899999998744
No 92
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=95.41 E-value=0.9 Score=44.83 Aligned_cols=196 Identities=9% Similarity=0.109 Sum_probs=116.4
Q ss_pred cccceeEEeec----cchhhhhhccccceeeecccccE--EEEecCCCCceEEEEeeecC--CCeEEEEEeEecCCCcee
Q 020740 94 KRSKIIEIVAA----RDIVFALAQSGVCAAFCRETNQR--ICFLNVTADEVIRSLFYNKN--NDSLITVSVYASDNFSSL 165 (322)
Q Consensus 94 kRS~V~EIv~a----~diI~aL~~sG~c~af~r~tn~~--iC~lN~s~dEvIrSiFyNk~--NdSlItvSvy~sd~fS~L 165 (322)
...+|.-+-.. ..+++.-...|....||..+++. +..+ ..+..-|.++-++.. .+.+++.| .|. .+
T Consensus 52 h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~-~~h~~~V~~v~~sp~~~~~~l~sgs---~dg--~I 125 (753)
T 3jro_A 52 HEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVH-AVHSASVNSVQWAPHEYGPLLLVAS---SDG--KV 125 (753)
T ss_dssp CSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCGGGCSEEEEEE---TTS--EE
T ss_pred CcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccc-cCCCCCeEEEEECCCCCCCEEEEEe---CCC--cE
Confidence 35567777665 45777778889999999999874 4444 345667888888877 45555533 222 22
Q ss_pred eeeeeehhhhHhCCCCCCCcceeecccCCCC---eEEecCC------------CceEEEEecCCCeEEEEeccCc----E
Q 020740 166 RCRSTRIEYIRRGKPDAGFALFESESLKWPG---FVEFDDV------------NGKVLTYSAQDSIYKVFDLKNY----T 226 (322)
Q Consensus 166 kCr~~~~e~i~~gk~~~g~~LFe~~~L~~Pg---FVEFDdv------------Ngkilty~aq~~~YrVfdlknY----s 226 (322)
+ .. +++.++... ... .-.+++ -+.|+.. +|+.++....++..++||+++- .
T Consensus 126 ~--vw---dl~~~~~~~--~~~---~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~ 195 (753)
T 3jro_A 126 S--VV---EFKENGTTS--PII---IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV 195 (753)
T ss_dssp E--EE---ECCSSSCCC--CEE---EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEE
T ss_pred E--EE---EeecCCCcc--eeE---eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccce
Confidence 2 22 222221101 111 112222 3456654 6788888889999999999876 4
Q ss_pred EEEEec--ccceeeEEEcCC----EEEEEEecCCCeeEEEEEEeecCceeeeee--eccccCCc---chhhhhccceeEE
Q 020740 227 MLYSIS--DKNVQEIKISPG----IMLLIFTKASGHVPLKILSIEDGTVLKSFN--HLLHRNKK---VDFIEQFNEKLLV 295 (322)
Q Consensus 227 ~LYsIs--de~VqEIkIS~G----imll~~q~~~~~iPlkIlsIedG~~l~~f~--~~L~~sk~---iqFiE~f~EkLLI 295 (322)
++..+. ...|..+.++|. -+++.--. .+. ++|.++.+|+...... ....+... +.|- .-+..|+.
T Consensus 196 ~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~-Dg~--I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~s-pdg~~l~s 271 (753)
T 3jro_A 196 LESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ-DRT--CIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWS-LSGNVLAL 271 (753)
T ss_dssp EEEEECCCSSCEEEEEECCCCSSSEEEEEEES-SSC--EEEEEESSSSSCCBCCBSSSSCCSSCCCCEEEC-TTTCCEEE
T ss_pred eeeeecCCCCcEEEEEeccCCCCCCEEEEEec-CCE--EEEecCCCCCCcceeEEeccCCCCCceEEEEEc-CCCCEEEE
Confidence 444444 456888888864 55444433 332 6789999885321111 11112222 2332 23556777
Q ss_pred EecCCceeEEEccc
Q 020740 296 KQENENLQILDVRI 309 (322)
Q Consensus 296 KQE~~~LqI~Dl~~ 309 (322)
--.+..+.+||+..
T Consensus 272 ~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 272 SGGDNKVTLWKENL 285 (753)
T ss_dssp ECSSSCEECCBCCS
T ss_pred EcCCCEEEEEecCC
Confidence 77889999999985
No 93
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=95.29 E-value=0.21 Score=43.12 Aligned_cols=107 Identities=13% Similarity=0.267 Sum_probs=70.2
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc-cceeeEEEcC-CEEEEEEecCCCeeEEEEEEeecCceeeeeee
Q 020740 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNH 275 (322)
Q Consensus 198 VEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsd-e~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~ 275 (322)
+.|.. +|+.++-...|+..++||+.+-+.++.++. ..|..+.++| |.+|+.... + -+++++++++..+..+..
T Consensus 202 ~~~sp-~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~sp~~~~la~~~~--~--~i~v~~~~~~~~~~~~~~ 276 (319)
T 3frx_A 202 LTASP-DGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATA--T--GIKVFSLDPQYLVDDLRP 276 (319)
T ss_dssp EEECT-TSSEEEEEETTCEEEEEETTTTEEEEEEECCSCEEEEEECSSSSEEEEEET--T--EEEEEEETTEEEEEEECC
T ss_pred EEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCcEEEEEEcCCCCEEEEEcC--C--CcEEEEeCcCeeeeccCc
Confidence 34544 566666677899999999999999998864 4577777775 444333322 2 278899988887766542
Q ss_pred cccc-----CC---cchhhhhccceeEEEecCCceeEEEcccc
Q 020740 276 LLHR-----NK---KVDFIEQFNEKLLVKQENENLQILDVRIS 310 (322)
Q Consensus 276 ~L~~-----sk---~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~ 310 (322)
.... .. .+.|- .=+.+|+.=-++..++|||+.+.
T Consensus 277 ~~~~~~~~~~~~v~~~~~s-pdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 277 EFAGYSKAAEPHAVSLAWS-ADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CCTTCCGGGCCCEEEEEEC-TTSSEEEEEETTSCEEEEEEEEC
T ss_pred cccccccCcCcceeEEEEC-CCCCEEEEeecCceEEEEEEeec
Confidence 1110 00 12221 23567777889999999999764
No 94
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=95.27 E-value=0.93 Score=46.41 Aligned_cols=190 Identities=15% Similarity=0.208 Sum_probs=115.6
Q ss_pred ceeEEeec--cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhh
Q 020740 97 KIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (322)
Q Consensus 97 ~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~ 174 (322)
.|.-+-+. ..++++-...|....|+..+++.+..+. ...-|.+|-++. +..|+++| .|. .++.- +
T Consensus 19 ~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~--~~~~V~~l~fsp-g~~L~S~s---~D~--~v~lW-----d 85 (902)
T 2oaj_A 19 KPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLE--DRSAIKEMRFVK-GIYLVVIN---AKD--TVYVL-----S 85 (902)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECS--SCCCEEEEEEET-TTEEEEEE---TTC--EEEEE-----E
T ss_pred CcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcC--CCCCEEEEEEcC-CCEEEEEE---CcC--eEEEE-----E
Confidence 44444443 2356666677899999998877666554 466789999998 55455543 232 33333 3
Q ss_pred hHhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEE-EEec------------ccceee
Q 020740 175 IRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSIS------------DKNVQE 238 (322)
Q Consensus 175 i~~gk~~~g~~LFe~~~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlknYs~L-YsIs------------de~VqE 238 (322)
+..|+. +. .+.+++ -+.|+. +|+.++--..++..++||+++-.+. |.+. ...|..
T Consensus 86 ~~~~~~-----~~---~~~~~~~V~~v~~sp-~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~s 156 (902)
T 2oaj_A 86 LYSQKV-----LT---TVFVPGKITSIDTDA-SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVS 156 (902)
T ss_dssp TTTCSE-----EE---EEECSSCEEEEECCT-TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCE
T ss_pred CCCCcE-----EE---EEcCCCCEEEEEECC-CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEE
Confidence 333331 21 112444 356765 4555555567999999999998864 5541 235778
Q ss_pred EEEcCC--EEEEEEecCCCeeEEEEEEeecCceeeeeeeccc---------------cCC---cchhhhhccceeEEEec
Q 020740 239 IKISPG--IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH---------------RNK---KVDFIEQFNEKLLVKQE 298 (322)
Q Consensus 239 IkIS~G--imll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~---------------~sk---~iqFiE~f~EkLLIKQE 298 (322)
+.++|. -.++. --..++ + |.++.+++.+..+..-++ +.. .+.|-. -+.+|..==+
T Consensus 157 l~~sp~~~~~l~~-g~~dg~--v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~lasgs~ 231 (902)
T 2oaj_A 157 IQWNPRDIGTVLI-SYEYVT--L-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP-NSLHIITIHE 231 (902)
T ss_dssp EEEETTEEEEEEE-ECSSCE--E-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT-TSSEEEEEET
T ss_pred EEEccCCCCEEEE-EeCCCc--E-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC-CCCEEEEEEC
Confidence 888873 33333 233444 4 899999999887763211 011 223322 2556777779
Q ss_pred CCceeEEEcccccce
Q 020740 299 NENLQILDVRISLFL 313 (322)
Q Consensus 299 ~~~LqI~Dl~~~~~~ 313 (322)
|..+++||+.+.+.+
T Consensus 232 Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 232 DNSLVFWDANSGHMI 246 (902)
T ss_dssp TCCEEEEETTTCCEE
T ss_pred CCeEEEEECCCCcEE
Confidence 999999999886654
No 95
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=95.22 E-value=0.72 Score=45.51 Aligned_cols=187 Identities=12% Similarity=0.064 Sum_probs=111.1
Q ss_pred chhhhhhccccceeeecc--cccEEEEecCCCCceEEEEeeecC--CCeEEEEEeEecCCCceeeeeeeehhhhHhCCCC
Q 020740 106 DIVFALAQSGVCAAFCRE--TNQRICFLNVTADEVIRSLFYNKN--NDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPD 181 (322)
Q Consensus 106 diI~aL~~sG~c~af~r~--tn~~iC~lN~s~dEvIrSiFyNk~--NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~ 181 (322)
..++.-...|....||.. +++.+..+. .+...|.++-++.. .+.|++.| .|. .++.-.+. .|+.
T Consensus 22 ~~latg~~dg~I~vwd~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~~~l~s~s---~Dg--~I~vwd~~-----~~~~- 89 (753)
T 3jro_A 22 KRLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCS---YDG--KVLIWKEE-----NGRW- 89 (753)
T ss_dssp CCEEEEETTTEEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCTTSCSEEEEEE---TTS--CEEEEEEE-----TTEE-
T ss_pred CeEEEEECCCcEEEEecCCCCCccceecc-CCcCceEEEEecCCCCCCEEEEEe---CCC--eEEEEECC-----CCcc-
Confidence 456666678999999987 555565665 45667888888765 45555533 232 33333321 1110
Q ss_pred CCCcceeecccCCCC---eEEecCCC-ceEEEEecCCCeEEEEeccCcE----EEEEecccceeeEEEcC----------
Q 020740 182 AGFALFESESLKWPG---FVEFDDVN-GKVLTYSAQDSIYKVFDLKNYT----MLYSISDKNVQEIKISP---------- 243 (322)
Q Consensus 182 ~g~~LFe~~~L~~Pg---FVEFDdvN-gkilty~aq~~~YrVfdlknYs----~LYsIsde~VqEIkIS~---------- 243 (322)
-.....-.|.+ -+.|...+ |..++....++..+|||+++-. ..+.-....|..+..+|
T Consensus 90 ----~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~ 165 (753)
T 3jro_A 90 ----SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHN 165 (753)
T ss_dssp ----EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--------
T ss_pred ----cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccc
Confidence 00011111222 35566553 7777778899999999998762 33334456788888887
Q ss_pred ----CEEEEEEecCCCeeEEEEEEeecCceeeeeee-ccccCCcchhhhhc-----cceeEEEecCCceeEEEccccc
Q 020740 244 ----GIMLLIFTKASGHVPLKILSIEDGTVLKSFNH-LLHRNKKVDFIEQF-----NEKLLVKQENENLQILDVRISL 311 (322)
Q Consensus 244 ----Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~-~L~~sk~iqFiE~f-----~EkLLIKQE~~~LqI~Dl~~~~ 311 (322)
|-+++.-..... ++|+++.+++....... +-.+..+|--+.-. +..|+.=-.+..+++||+.+.+
T Consensus 166 ~~~d~~~l~sgs~dg~---I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 166 GTKESRKFVTGGADNL---VKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ 240 (753)
T ss_dssp -CGGGCCEEEEETTSC---EEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSS
T ss_pred cCCCCCEEEEEECCCe---EEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCC
Confidence 455444433332 78899988854432221 11234444433322 5677777889999999999863
No 96
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=95.16 E-value=2 Score=40.77 Aligned_cols=184 Identities=14% Similarity=0.205 Sum_probs=104.4
Q ss_pred hhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcce
Q 020740 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187 (322)
Q Consensus 108 I~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LF 187 (322)
++.-..-|....||..+++.+..+. .+..-|.++=++.+...|++.| .|. .++. - ++..|+. ...|
T Consensus 163 l~s~s~D~~v~lwd~~~~~~~~~l~-~H~~~V~~v~fspdg~~las~s---~D~--~i~l--w---d~~~g~~---~~~~ 228 (611)
T 1nr0_A 163 IISGSDDNTVAIFEGPPFKFKSTFG-EHTKFVHSVRYNPDGSLFASTG---GDG--TIVL--Y---NGVDGTK---TGVF 228 (611)
T ss_dssp EEEEETTSCEEEEETTTBEEEEEEC-CCSSCEEEEEECTTSSEEEEEE---TTS--CEEE--E---ETTTCCE---EEEC
T ss_pred EEEEeCCCeEEEEECCCCeEeeeec-cccCceEEEEECCCCCEEEEEE---CCC--cEEE--E---ECCCCcE---eeee
Confidence 5555566888899988888777775 4666789999998777666644 232 2222 2 1222221 0011
Q ss_pred eeccc---CCCCe---EEecCCCceEEEEecCCCeEEEEeccCcEEEEEeccc-----ceeeEEEcCCEEEEEEecCCCe
Q 020740 188 ESESL---KWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-----NVQEIKISPGIMLLIFTKASGH 256 (322)
Q Consensus 188 e~~~L---~~PgF---VEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde-----~VqEIkIS~Gimll~~q~~~~~ 256 (322)
+...+ .|.+- +.|.. +|+.|+-...|++.|+||+.+.+++..+... ....+...+..++.. -. .+
T Consensus 229 ~~~~~~~~~h~~~V~~v~~sp-dg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~-s~-d~- 304 (611)
T 1nr0_A 229 EDDSLKNVAHSGSVFGLTWSP-DGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSI-SA-NG- 304 (611)
T ss_dssp BCTTSSSCSSSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEE-ET-TC-
T ss_pred ccccccccccCCCEEEEEECC-CCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEE-eC-CC-
Confidence 11111 34443 56765 4555655678999999999999988777532 111222223222221 11 12
Q ss_pred eEEEEEEeecCceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEEcccccce
Q 020740 257 VPLKILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 257 iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
-+++++.++|+.+..+. .+...|.=+. .-+.+|+.=-++..+++||+.+.+..
T Consensus 305 -~i~~~~~~~~~~~~~~~---gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~ 359 (611)
T 1nr0_A 305 -FINFVNPELGSIDQVRY---GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN 359 (611)
T ss_dssp -CEEEEETTTTEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred -cEEEEeCCCCCcceEEc---CCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Confidence 24667777776554332 2233322121 12556777778999999999876543
No 97
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=95.05 E-value=1.5 Score=41.67 Aligned_cols=191 Identities=12% Similarity=0.150 Sum_probs=115.2
Q ss_pred chhhhhhccccceeeecccccEEE--EecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCC
Q 020740 106 DIVFALAQSGVCAAFCRETNQRIC--FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG 183 (322)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~~iC--~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g 183 (322)
.+|+.-...|....+|..+++..+ .+. .+..-|.++=++..+..|++++. ..+.+ -+++... .|+...
T Consensus 72 ~~lasg~~d~~v~lWd~~~~~~~~~~~~~-~~~~~v~~v~fs~dg~~l~~~~~-~~~~~--~~v~~wd-----~~~~~~- 141 (611)
T 1nr0_A 72 YYCASGDVHGNVRIWDTTQTTHILKTTIP-VFSGPVKDISWDSESKRIAAVGE-GRERF--GHVFLFD-----TGTSNG- 141 (611)
T ss_dssp SEEEEEETTSEEEEEESSSTTCCEEEEEE-CSSSCEEEEEECTTSCEEEEEEC-CSSCS--EEEEETT-----TCCBCB-
T ss_pred cEEEEEeCCCCEEEeECCCCcceeeEeec-ccCCceEEEEECCCCCEEEEEEC-CCCce--eEEEEee-----CCCCcc-
Confidence 456666677899999987665443 343 34556889999987777766441 11111 1222211 122100
Q ss_pred CcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc--cceeeEEEcC-CEEEEEEecCCCeeEEE
Q 020740 184 FALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--KNVQEIKISP-GIMLLIFTKASGHVPLK 260 (322)
Q Consensus 184 ~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsd--e~VqEIkIS~-Gimll~~q~~~~~iPlk 260 (322)
. +. ..-...--+.|.......++-...|+..++||+.+.+++..+.. ..|..+.++| |-+|+.--. .+. ++
T Consensus 142 -~-l~-gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~-D~~--i~ 215 (611)
T 1nr0_A 142 -N-LT-GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG-DGT--IV 215 (611)
T ss_dssp -C-CC-CCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET-TSC--EE
T ss_pred -e-ec-CCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC-CCc--EE
Confidence 0 10 00111224567665554566667899999999999998888863 4588899985 555444333 332 68
Q ss_pred EEEeecCceeeeeeec----cccCCcchhhhh--ccceeEEEecCCceeEEEcccccc
Q 020740 261 ILSIEDGTVLKSFNHL----LHRNKKVDFIEQ--FNEKLLVKQENENLQILDVRISLF 312 (322)
Q Consensus 261 IlsIedG~~l~~f~~~----L~~sk~iqFiE~--f~EkLLIKQE~~~LqI~Dl~~~~~ 312 (322)
|.++.+|+.+..+... ..+...|.-+.- -+.+|+.=-.+..+++||+.+.+.
T Consensus 216 lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~ 273 (611)
T 1nr0_A 216 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV 273 (611)
T ss_dssp EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred EEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Confidence 9999999998876310 023334332222 245677777999999999987654
No 98
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=95.02 E-value=1.3 Score=37.00 Aligned_cols=118 Identities=8% Similarity=0.026 Sum_probs=83.9
Q ss_pred CCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccc-----------eeeEEEcC-CEEEEEEe-cCCCeeEE
Q 020740 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN-----------VQEIKISP-GIMLLIFT-KASGHVPL 259 (322)
Q Consensus 193 ~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~-----------VqEIkIS~-Gimll~~q-~~~~~iPl 259 (322)
..|.-+.|+.....+.+.+..++...+||+++-+.+-.+.... ...+.++| |-.+++.. ...+. +
T Consensus 89 ~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~--i 166 (353)
T 3vgz_A 89 LKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESV--I 166 (353)
T ss_dssp SCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCE--E
T ss_pred CCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCce--E
Confidence 4577888998777788888888999999999998887776543 67788884 33334433 33333 6
Q ss_pred EEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEEcccccce
Q 020740 260 KILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 260 kIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
.++++.+|+.+..+...-..-..+.| -.-+.+|++--++..+.+||+.+.++.
T Consensus 167 ~~~d~~~~~~~~~~~~~~~~~~~~~~-s~dg~~l~~~~~~~~i~~~d~~~~~~~ 219 (353)
T 3vgz_A 167 WVVDGGNIKLKTAIQNTGKMSTGLAL-DSEGKRLYTTNADGELITIDTADNKIL 219 (353)
T ss_dssp EEEETTTTEEEEEECCCCTTCCCCEE-ETTTTEEEEECTTSEEEEEETTTTEEE
T ss_pred EEEcCCCCceEEEecCCCCccceEEE-CCCCCEEEEEcCCCeEEEEECCCCeEE
Confidence 77899999998877621111223332 234678999888999999999887654
No 99
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=95.01 E-value=0.22 Score=51.02 Aligned_cols=112 Identities=15% Similarity=0.276 Sum_probs=80.7
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc-cceeeEEEcCCEEEEEEecCCCeeEEEEEEeecCceeeeeeec
Q 020740 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHL 276 (322)
Q Consensus 198 VEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsd-e~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~ 276 (322)
+.|+. +|+.|+--..|+..++||..+.++++.... ..|..+.++||-.|+.-- ..+ -++|.++++|+.+..+.+.
T Consensus 23 lafsp-dg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fspg~~L~S~s-~D~--~v~lWd~~~~~~~~~~~~~ 98 (902)
T 2oaj_A 23 AAFDF-TQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVKGIYLVVIN-AKD--TVYVLSLYSQKVLTTVFVP 98 (902)
T ss_dssp EEEET-TTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEETTTEEEEEE-TTC--EEEEEETTTCSEEEEEECS
T ss_pred EEECC-CCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcCCCEEEEEE-CcC--eEEEEECCCCcEEEEEcCC
Confidence 56766 456677677899999999999998888764 459999999988544433 233 3789999999999877531
Q ss_pred cccCCcchhhhhccceeEEEecCCceeEEEcccccceee
Q 020740 277 LHRNKKVDFIEQFNEKLLVKQENENLQILDVRISLFLPL 315 (322)
Q Consensus 277 L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~~~ 315 (322)
..-.-+.|- .-+.+|++=-++..+++||+.+.++.++
T Consensus 99 -~~V~~v~~s-p~g~~l~sgs~dg~V~lwd~~~~~~~~~ 135 (902)
T 2oaj_A 99 -GKITSIDTD-ASLDWMLIGLQNGSMIVYDIDRDQLSSF 135 (902)
T ss_dssp -SCEEEEECC-TTCSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred -CCEEEEEEC-CCCCEEEEEcCCCcEEEEECCCCccccc
Confidence 111122322 3467888888999999999998776543
No 100
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=95.00 E-value=1.9 Score=43.68 Aligned_cols=159 Identities=16% Similarity=0.248 Sum_probs=100.0
Q ss_pred ccceeEEeec--cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020740 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (322)
Q Consensus 95 RS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~ 172 (322)
...|.-+-+. ...++.-...|....||..|++.+..+. .+..-|.++=++.+++.|++.| .|. . ++.-
T Consensus 615 ~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~---~d~--~--v~vw-- 684 (1249)
T 3sfz_A 615 TDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIK-AHEDEVLCCAFSSDDSYIATCS---ADK--K--VKIW-- 684 (1249)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEE---TTS--E--EEEE--
T ss_pred cccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEec-cCCCCEEEEEEecCCCEEEEEe---CCC--e--EEEE--
Confidence 3445555544 3356666777899999999999999887 5566778888888777766644 232 2 2222
Q ss_pred hhhHhCCCCCCCcceeecccCCCC---eEEecCC-CceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcCC-E
Q 020740 173 EYIRRGKPDAGFALFESESLKWPG---FVEFDDV-NGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPG-I 245 (322)
Q Consensus 173 e~i~~gk~~~g~~LFe~~~L~~Pg---FVEFDdv-Ngkilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~G-i 245 (322)
++..|+. +..-. .|++ -+.|... ++.+++-...++..++||+.+-+++..+. ...|..+.++|. -
T Consensus 685 -d~~~~~~-----~~~~~--~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~ 756 (1249)
T 3sfz_A 685 -DSATGKL-----VHTYD--EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE 756 (1249)
T ss_dssp -ETTTCCE-----EEEEE--CCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTT
T ss_pred -ECCCCce-----EEEEc--CCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCC
Confidence 2223332 21110 1222 2456443 66777777889999999999999888875 355777777753 3
Q ss_pred EEEEEecCCCeeEEEEEEeecCceeeeee
Q 020740 246 MLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (322)
Q Consensus 246 mll~~q~~~~~iPlkIlsIedG~~l~~f~ 274 (322)
+++.-- ..+ .+++.++.+|+....+.
T Consensus 757 ~l~s~s-~dg--~v~vwd~~~~~~~~~~~ 782 (1249)
T 3sfz_A 757 LLASCS-ADG--TLRLWDVRSANERKSIN 782 (1249)
T ss_dssp EEEEEE-SSS--EEEEEEGGGTEEEEEEE
T ss_pred EEEEEE-CCC--eEEEEeCCCCcccceec
Confidence 333322 222 26788888887776554
No 101
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=95.00 E-value=0.054 Score=46.39 Aligned_cols=110 Identities=12% Similarity=0.140 Sum_probs=64.5
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCc--EEEEEec--ccceeeEEEcC-CEEEEEEecCCCeeEEEEEEeecCceeee
Q 020740 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNY--TMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (322)
Q Consensus 198 VEFDdvNgkilty~aq~~~YrVfdlknY--s~LYsIs--de~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG~~l~~ 272 (322)
+.|.. +|+.++....++..++||+.+- .++..+. ...|..+.++| |-+|+.--... -++|.++++|+....
T Consensus 17 ~~~s~-~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~---~v~vwd~~~~~~~~~ 92 (377)
T 3dwl_C 17 HAFNS-QRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDR---NAYVYEKRPDGTWKQ 92 (377)
T ss_dssp CEECS-SSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTS---SEEEC------CCCC
T ss_pred EEECC-CCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCC---eEEEEEcCCCCceee
Confidence 45555 6777777778999999999987 6666664 45688889885 44444443332 278999999882222
Q ss_pred eeeccccCCcchhhhh--ccceeEEEecCCceeEEEccccc
Q 020740 273 FNHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVRISL 311 (322)
Q Consensus 273 f~~~L~~sk~iqFiE~--f~EkLLIKQE~~~LqI~Dl~~~~ 311 (322)
...+..+...+.-+.- -+.+|+.--.+..+++||+.+.+
T Consensus 93 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 133 (377)
T 3dwl_C 93 TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEN 133 (377)
T ss_dssp EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC----
T ss_pred eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcc
Confidence 2222233444433332 25577888889999999998875
No 102
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=94.97 E-value=1.6 Score=38.81 Aligned_cols=171 Identities=9% Similarity=0.166 Sum_probs=101.2
Q ss_pred cccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceeecccC
Q 020740 114 SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLK 193 (322)
Q Consensus 114 sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~~~L~ 193 (322)
-|....+|..|++.+..+... . -|.+|=++.+...|.+. +++ .+ +.. +... +..+.......
T Consensus 156 d~~i~iwd~~~~~~~~~~~~~-~-~V~~v~fspdg~~l~s~----s~~--~~--~~~---~~~~-----~~~~~~~~~~~ 217 (365)
T 4h5i_A 156 PAIMRIIDPSDLTEKFEIETR-G-EVKDLHFSTDGKVVAYI----TGS--SL--EVI---STVT-----GSCIARKTDFD 217 (365)
T ss_dssp SCEEEEEETTTTEEEEEEECS-S-CCCEEEECTTSSEEEEE----CSS--CE--EEE---ETTT-----CCEEEEECCCC
T ss_pred CCEEEEeECCCCcEEEEeCCC-C-ceEEEEEccCCceEEec----cce--eE--EEE---Eecc-----CcceeeeecCC
Confidence 367889999999999888743 3 37889888766655543 243 11 111 1111 22222222222
Q ss_pred CCC---eEEecCCCceEEEEecCCC---eEEEEeccCcEE----EEEecc--cceeeEEEcC-CEEEEEEecCCCeeEEE
Q 020740 194 WPG---FVEFDDVNGKVLTYSAQDS---IYKVFDLKNYTM----LYSISD--KNVQEIKISP-GIMLLIFTKASGHVPLK 260 (322)
Q Consensus 194 ~Pg---FVEFDdvNgkilty~aq~~---~YrVfdlknYs~----LYsIsd--e~VqEIkIS~-Gimll~~q~~~~~iPlk 260 (322)
+.+ -+.|...+..+++.+...+ ..+.||+++... ...+.. ..|.-+.+|| |-+|+.--.-. -++
T Consensus 218 ~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~---~V~ 294 (365)
T 4h5i_A 218 KNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDN---SIA 294 (365)
T ss_dssp TTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTS---CEE
T ss_pred CCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCC---EEE
Confidence 222 2557666666666655443 688899887653 333432 4577778874 55555443332 268
Q ss_pred EEEeecCceeeeeeeccccCCc---chhhhhccceeEEEecCCceeEEEcc
Q 020740 261 ILSIEDGTVLKSFNHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVR 308 (322)
Q Consensus 261 IlsIedG~~l~~f~~~L~~sk~---iqFiE~f~EkLLIKQE~~~LqI~Dl~ 308 (322)
|++++||+++..+.. -| ... +.|- +=+.+|.-==.|..++||||-
T Consensus 295 iwd~~~~~~~~~~~~-gH-~~~V~~v~fS-pdg~~laS~S~D~tvrvw~ip 342 (365)
T 4h5i_A 295 LVKLKDLSMSKIFKQ-AH-SFAITEVTIS-PDSTYVASVSAANTIHIIKLP 342 (365)
T ss_dssp EEETTTTEEEEEETT-SS-SSCEEEEEEC-TTSCEEEEEETTSEEEEEECC
T ss_pred EEECCCCcEEEEecC-cc-cCCEEEEEEC-CCCCEEEEEeCCCeEEEEEcC
Confidence 999999999987631 12 333 3332 124455556699999999995
No 103
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=94.91 E-value=1.4 Score=36.67 Aligned_cols=186 Identities=12% Similarity=0.068 Sum_probs=101.0
Q ss_pred hccccceeeecccccEEEEecCCC-----CceEEEEeeecCCCeEEEEEeE---ecCCCc--eeeeeeeehhhhHhCCCC
Q 020740 112 AQSGVCAAFCRETNQRICFLNVTA-----DEVIRSLFYNKNNDSLITVSVY---ASDNFS--SLRCRSTRIEYIRRGKPD 181 (322)
Q Consensus 112 ~~sG~c~af~r~tn~~iC~lN~s~-----dEvIrSiFyNk~NdSlItvSvy---~sd~fS--~LkCr~~~~e~i~~gk~~ 181 (322)
...|.-..||..|++.+-.+.... ...++++-++.+...|++.+.- ..+.+. .=.....+.+ .|+..
T Consensus 62 ~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~---~~~~~ 138 (349)
T 1jmx_B 62 NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTA---DGLEA 138 (349)
T ss_dssp TTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGG---GGGGB
T ss_pred CCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECC---Ccccc
Confidence 456777889998898887776443 3346677788777777765521 011110 0123333333 22221
Q ss_pred CCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccc--------------------------
Q 020740 182 AGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN-------------------------- 235 (322)
Q Consensus 182 ~g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~-------------------------- 235 (322)
.....+... ..|.-+.|+. +|++++. ++...+||+++.+.+-.++...
T Consensus 139 ~~~~~~~~~--~~~~~~~~s~-dg~l~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (349)
T 1jmx_B 139 KPVRTFPMP--RQVYLMRAAD-DGSLYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM 212 (349)
T ss_dssp CCSEEEECC--SSCCCEEECT-TSCEEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred ceeeeccCC--CcccceeECC-CCcEEEc---cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence 111222211 1233334765 4455552 3348899998888776665331
Q ss_pred --------------------------------------------eeeEEEc--CCEEEEEEecCCCeeEEEEEEeecCce
Q 020740 236 --------------------------------------------VQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTV 269 (322)
Q Consensus 236 --------------------------------------------VqEIkIS--~Gimll~~q~~~~~iPlkIlsIedG~~ 269 (322)
+..+.++ +|-.+++. .+ -+.++++.+|+.
T Consensus 213 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~---~~--~v~~~d~~~~~~ 287 (349)
T 1jmx_B 213 LYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LN--RLAKYDLKQRKL 287 (349)
T ss_dssp EEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ES--EEEEEETTTTEE
T ss_pred eeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE---cC--eEEEEECccCeE
Confidence 1112222 23332332 22 468899999998
Q ss_pred eeeeeeccccCCcchhhhhccceeEEEecCCceeEEEcccccce
Q 020740 270 LKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 270 l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
+..+..- +.-..+.|- .=+.+|++-..+..+.+||+.+.+.+
T Consensus 288 ~~~~~~~-~~~~~~~~s-~dg~~l~~~~~~~~v~v~d~~~~~~~ 329 (349)
T 1jmx_B 288 IKAANLD-HTYYCVAFD-KKGDKLYLGGTFNDLAVFNPDTLEKV 329 (349)
T ss_dssp EEEEECS-SCCCEEEEC-SSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred EEEEcCC-CCccceEEC-CCCCEEEEecCCCeEEEEecccccee
Confidence 8876521 111122221 12568899888899999999886644
No 104
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=94.86 E-value=0.73 Score=38.36 Aligned_cols=104 Identities=9% Similarity=0.045 Sum_probs=72.9
Q ss_pred CceEEEEecCCCeEEEEeccCcEEEEEeccc---ceeeEEEcC-CEEEEEEecCCCeeEEEEEEeecCceeeeeeecccc
Q 020740 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDK---NVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHR 279 (322)
Q Consensus 204 Ngkilty~aq~~~YrVfdlknYs~LYsIsde---~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~ 279 (322)
++++++-...++..++||+.+.+.+-.+.-. ....+.++| |-.+++.....+. +.++++.+|+.+..+.. +.
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~--i~~~d~~t~~~~~~~~~--~~ 85 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD--IYGIDLDTCKNTFHANL--SS 85 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTE--EEEEETTTTEEEEEEES--CC
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCc--EEEEeCCCCcEEEEEEc--cc
Confidence 6777777788999999999999987777643 478888884 4444555544444 57899999998876652 21
Q ss_pred --------CCcchhhhhccceeEEEecC------------CceeEEEcccccc
Q 020740 280 --------NKKVDFIEQFNEKLLVKQEN------------ENLQILDVRISLF 312 (322)
Q Consensus 280 --------sk~iqFiE~f~EkLLIKQE~------------~~LqI~Dl~~~~~ 312 (322)
-..+.|- .=+.+|++-.++ ..+.+||+.+.+.
T Consensus 86 ~~~~~~~~~~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 137 (349)
T 1jmx_B 86 VPGEVGRSMYSFAIS-PDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLE 137 (349)
T ss_dssp STTEEEECSSCEEEC-TTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGG
T ss_pred ccccccccccceEEC-CCCCEEEEEcccccccccccccCCCeEEEEECCCccc
Confidence 1223322 236688887754 8999999988443
No 105
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=94.68 E-value=0.25 Score=43.04 Aligned_cols=198 Identities=10% Similarity=0.112 Sum_probs=119.2
Q ss_pred cceeEEeeccc----hhhhhhccccceeeecccccEEE---------------------------------------Eec
Q 020740 96 SKIIEIVAARD----IVFALAQSGVCAAFCRETNQRIC---------------------------------------FLN 132 (322)
Q Consensus 96 S~V~EIv~a~d----iI~aL~~sG~c~af~r~tn~~iC---------------------------------------~lN 132 (322)
.+|..+....+ .+++-+..|....||..+++... .+-
T Consensus 94 ~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (447)
T 3dw8_B 94 EKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFA 173 (447)
T ss_dssp CCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEEC
T ss_pred CceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEec
Confidence 45555555532 46666778888899887765421 223
Q ss_pred CCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceee------cccCCC---CeEEecCC
Q 020740 133 VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES------ESLKWP---GFVEFDDV 203 (322)
Q Consensus 133 ~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~------~~L~~P---gFVEFDdv 203 (322)
..+..-|.++-++.....|++ . +|. .++.-.+ +.+ ...+.. ..-.|. --+.|+..
T Consensus 174 ~~h~~~v~~~~~~~~~~~l~s--~--~d~--~i~iwd~-----~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~p~ 237 (447)
T 3dw8_B 174 NAHTYHINSISINSDYETYLS--A--DDL--RINLWHL-----EIT-----DRSFNIVDIKPANMEELTEVITAAEFHPN 237 (447)
T ss_dssp SCCSSCCCEEEECTTSSEEEE--E--CSS--EEEEEET-----TEE-----EEEEEEEECCCSSGGGCCCCEEEEEECSS
T ss_pred cCCCcceEEEEEcCCCCEEEE--e--CCC--eEEEEEC-----CCC-----CceeeeeecccccccccCcceEEEEECCC
Confidence 456667888888876554443 2 343 2332221 100 001110 011122 24577766
Q ss_pred CceEEEEecCCCeEEEEeccCcEE----EEEeccc--------------ceeeEEEcC-CEEEEEEecCCCeeEEEEEEe
Q 020740 204 NGKVLTYSAQDSIYKVFDLKNYTM----LYSISDK--------------NVQEIKISP-GIMLLIFTKASGHVPLKILSI 264 (322)
Q Consensus 204 Ngkilty~aq~~~YrVfdlknYs~----LYsIsde--------------~VqEIkIS~-Gimll~~q~~~~~iPlkIlsI 264 (322)
++..++....|+..++||+++.+. +-.+... .|..+.++| |-+|+.... =-++|+++
T Consensus 238 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~----~~v~iwd~ 313 (447)
T 3dw8_B 238 SCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY----LSVKVWDL 313 (447)
T ss_dssp CTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES----SEEEEEET
T ss_pred CCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC----CeEEEEeC
Confidence 557888888899999999998775 4444432 788999985 445444333 34689999
Q ss_pred ec-CceeeeeeeccccCC---------------cchhhhhccceeEEEecCCceeEEEccccccee
Q 020740 265 ED-GTVLKSFNHLLHRNK---------------KVDFIEQFNEKLLVKQENENLQILDVRISLFLP 314 (322)
Q Consensus 265 ed-G~~l~~f~~~L~~sk---------------~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~~ 314 (322)
.+ |+.+..+..--.... .+.|- .-+.+|+.=-++..+++||+.+.+...
T Consensus 314 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s-~~~~~l~s~s~dg~v~iwd~~~~~~~~ 378 (447)
T 3dw8_B 314 NMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWN-GSDSVVMTGSYNNFFRMFDRNTKRDIT 378 (447)
T ss_dssp TCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEEC-TTSSEEEEECSTTEEEEEETTTCCEEE
T ss_pred CCCccccceeeccccccccccccccccccccceEEEEC-CCCCEEEEeccCCEEEEEEcCCCccee
Confidence 97 988887762111011 13332 235678777899999999999987754
No 106
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=94.67 E-value=0.53 Score=41.41 Aligned_cols=104 Identities=9% Similarity=0.142 Sum_probs=69.4
Q ss_pred eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEc--CCEEEEEEecCCCeeEEEEEEeecCceeeeee
Q 020740 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS--PGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (322)
Q Consensus 197 FVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS--~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~ 274 (322)
-+.|.. +|+.++... ++.+++||+.+.+.++......+.-+.++ ++.+++.-... . -++|.++.+|+.+..+.
T Consensus 24 ~v~fs~-dg~~la~g~-~~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~--~v~iWd~~~~~~~~~~~ 98 (355)
T 3vu4_A 24 DYEFNQ-DQSCLILST-LKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVK-E--VVHIWDDVKKQDVSRIK 98 (355)
T ss_dssp EEEECT-TSSEEEEEC-SSEEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSST-T--EEEEEETTTTEEEEEEE
T ss_pred EEEECC-CCCEEEEEc-CCEEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCc-c--EEEEEECCCCcEEEEEE
Confidence 466765 566666444 45689999999998888765544444443 44544433322 2 68999999999999776
Q ss_pred eccccCCcchhhhhccceeEEEecCCceeEEEcccc
Q 020740 275 HLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRIS 310 (322)
Q Consensus 275 ~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~ 310 (322)
+ ..++.-+....+.+++=. +..++|||+.+.
T Consensus 99 ~----~~~v~~v~~~~~~~~~~~-~~~i~i~d~~~~ 129 (355)
T 3vu4_A 99 V----DAPVKDLFLSREFIVVSY-GDVISVFKFGNP 129 (355)
T ss_dssp C----SSCEEEEEECSSEEEEEE-TTEEEEEESSTT
T ss_pred C----CCceEEEEEcCCEEEEEE-cCEEEEEECCCC
Confidence 3 235554555556666655 567999999886
No 107
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=94.63 E-value=1.6 Score=36.13 Aligned_cols=195 Identities=12% Similarity=0.195 Sum_probs=114.6
Q ss_pred ccceeEEeecc--chhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020740 95 RSKIIEIVAAR--DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (322)
Q Consensus 95 RS~V~EIv~a~--diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~ 172 (322)
...|.-+.... .+++.-...|....++..++............ +....+...+..|++.| .|. .++..
T Consensus 86 ~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~s~s---~d~--~~~~~---- 155 (340)
T 4aow_A 86 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD-VLSVAFSSDNRQIVSGS---RDK--TIKLW---- 155 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC-EEEEEECTTSSCEEEEE---TTS--CEEEE----
T ss_pred CCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCc-eeEEEEeecCccceeec---CCC--eEEEE----
Confidence 34565555543 35666667788888888888777776665554 44566676777776643 222 11111
Q ss_pred hhhHhCCCCCCCcceeecccCCCC---eEEecC-CCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcC-CE
Q 020740 173 EYIRRGKPDAGFALFESESLKWPG---FVEFDD-VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP-GI 245 (322)
Q Consensus 173 e~i~~gk~~~g~~LFe~~~L~~Pg---FVEFDd-vNgkilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~-Gi 245 (322)
++.. . .........+.+ .+.|.. ....+++....++..++||+++-+++..+. ...|..+.++| |-
T Consensus 156 -d~~~-----~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~ 228 (340)
T 4aow_A 156 -NTLG-----V-CKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGS 228 (340)
T ss_dssp -CTTS-----C-EEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS
T ss_pred -EeCC-----C-ceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCC
Confidence 1110 0 011111112222 234443 234455556779999999999999888876 34577888875 44
Q ss_pred EEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhh-ccceeEEEecCCceeEEEcccccce
Q 020740 246 MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ-FNEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 246 mll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~-f~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
+|+.-- ..+ -++|.++.+++.+..+.. ...+.-+.. -+.+++.=-.+..++|||+.+....
T Consensus 229 ~l~s~s-~Dg--~i~iwd~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~ 290 (340)
T 4aow_A 229 LCASGG-KDG--QAMLWDLNEGKHLYTLDG----GDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIV 290 (340)
T ss_dssp EEEEEE-TTC--EEEEEETTTTEEEEEEEC----SSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEE
T ss_pred EEEEEe-CCC--eEEEEEeccCceeeeecC----CceEEeeecCCCCceeeccCCCEEEEEECCCCeEE
Confidence 444332 223 367899999998887653 122221111 1456777778999999999876543
No 108
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=94.63 E-value=1.9 Score=37.00 Aligned_cols=191 Identities=10% Similarity=0.184 Sum_probs=111.9
Q ss_pred ceeEEeec--cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhh
Q 020740 97 KIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEY 174 (322)
Q Consensus 97 ~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~ 174 (322)
.|..+.+. ...++.-..-|....||..+++.+..+.. +..-|.++=++.....|++.| .+ ..++.-.+
T Consensus 67 ~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~s----~D-~~i~vwd~---- 136 (319)
T 3frx_A 67 IVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVG-HKSDVMSVDIDKKASMIISGS----RD-KTIKVWTI---- 136 (319)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-CSSCEEEEEECTTSCEEEEEE----TT-SCEEEEET----
T ss_pred cEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEcc-CCCcEEEEEEcCCCCEEEEEe----CC-CeEEEEEC----
Confidence 44444443 23566666779999999999998887764 445678888887766666543 22 22332221
Q ss_pred hHhCCCCCCCcceeecccCCCCe---EEecC-----CCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcC-
Q 020740 175 IRRGKPDAGFALFESESLKWPGF---VEFDD-----VNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP- 243 (322)
Q Consensus 175 i~~gk~~~g~~LFe~~~L~~PgF---VEFDd-----vNgkilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~- 243 (322)
+ |+ .+. ....|.+. +.|.. .++..++-...|+..++||+++++....+. ...|..+.++|
T Consensus 137 -~-~~-----~~~--~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~ 207 (319)
T 3frx_A 137 -K-GQ-----CLA--TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 207 (319)
T ss_dssp -T-SC-----EEE--EECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTT
T ss_pred -C-CC-----eEE--EEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCC
Confidence 1 11 111 01122222 23322 134456666789999999999999887764 45677888875
Q ss_pred CEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEEcccccc
Q 020740 244 GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISLF 312 (322)
Q Consensus 244 Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~ 312 (322)
|-+|+.-- ..+ -++|.++.+++.+..+... ..-..+.|-. +.++|.=-.+..+++||+....+
T Consensus 208 g~~l~s~~-~dg--~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp--~~~~la~~~~~~i~v~~~~~~~~ 270 (319)
T 3frx_A 208 GTLIASAG-KDG--EIMLWNLAAKKAMYTLSAQ-DEVFSLAFSP--NRYWLAAATATGIKVFSLDPQYL 270 (319)
T ss_dssp SSEEEEEE-TTC--EEEEEETTTTEEEEEEECC-SCEEEEEECS--SSSEEEEEETTEEEEEEETTEEE
T ss_pred CCEEEEEe-CCC--eEEEEECCCCcEEEEecCC-CcEEEEEEcC--CCCEEEEEcCCCcEEEEeCcCee
Confidence 44444332 223 3788999999988876531 1111222221 23444445566799999876544
No 109
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=94.57 E-value=0.79 Score=39.49 Aligned_cols=123 Identities=11% Similarity=0.203 Sum_probs=75.3
Q ss_pred ceeEEeecc--chhhhhhccccceeeecccccEE-EEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehh
Q 020740 97 KIIEIVAAR--DIVFALAQSGVCAAFCRETNQRI-CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (322)
Q Consensus 97 ~V~EIv~a~--diI~aL~~sG~c~af~r~tn~~i-C~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e 173 (322)
.|.-+-... .++++-...|....||..+++.+ ..+...+..-|.+|-++.+...|++.| |+ .+ +.-
T Consensus 172 ~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~----~~--~v--~iw--- 240 (343)
T 3lrv_A 172 EYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC----DQ--TV--VCF--- 240 (343)
T ss_dssp CCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE----SS--BE--EEE---
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe----CC--eE--EEE---
Confidence 344444442 34454578899999999999988 778776788999999998777666644 43 23 322
Q ss_pred hhHhCCCCCCCcceeecccCCC-CeEEecCCCceEEEEecCCCeEEEEeccCcEEEEE
Q 020740 174 YIRRGKPDAGFALFESESLKWP-GFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS 230 (322)
Q Consensus 174 ~i~~gk~~~g~~LFe~~~L~~P-gFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYs 230 (322)
+++.++.-.....|+...+.-. --+.|+.....+++.++.++..+||++..-...++
T Consensus 241 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~ 298 (343)
T 3lrv_A 241 DLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWT 298 (343)
T ss_dssp ETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEE
T ss_pred EcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceE
Confidence 4444443111112221111111 24889886666666666699999999866544333
No 110
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=94.55 E-value=0.7 Score=41.52 Aligned_cols=188 Identities=12% Similarity=0.149 Sum_probs=106.0
Q ss_pred hhhhhhccccceeeecccccE-------EEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCC
Q 020740 107 IVFALAQSGVCAAFCRETNQR-------ICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGK 179 (322)
Q Consensus 107 iI~aL~~sG~c~af~r~tn~~-------iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk 179 (322)
++++-...|....|+..++.. ...+ ..+...|.++-++..+..++.+. ..| ..++.. +++.++
T Consensus 196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~s~--~~d--g~i~i~-----d~~~~~ 265 (430)
T 2xyi_A 196 YLLSASDDHTICLWDINATPKEHRVIDAKNIF-TGHTAVVEDVAWHLLHESLFGSV--ADD--QKLMIW-----DTRNNN 265 (430)
T ss_dssp EEEEECTTSCEEEEETTSCCBGGGEEECSEEE-CCCSSCEEEEEECSSCTTEEEEE--ETT--SEEEEE-----ETTCSC
T ss_pred eEEEEeCCCeEEEEeCCCCCCCCceeccceee-cCCCCCEeeeEEeCCCCCEEEEE--eCC--CeEEEE-----ECCCCC
Confidence 666677788899999877322 2222 24566788888887555555421 122 223332 333332
Q ss_pred CCCCCcceee-cccCCCCeEEecCCCceEEEEecCCCeEEEEeccCc-EEEEEe--cccceeeEEEcCCE--EEEEEecC
Q 020740 180 PDAGFALFES-ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSI--SDKNVQEIKISPGI--MLLIFTKA 253 (322)
Q Consensus 180 ~~~g~~LFe~-~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknY-s~LYsI--sde~VqEIkIS~Gi--mll~~q~~ 253 (322)
. ..++..- ..-..+--+.|...+..+++-...++..++||+++. ..+..+ ....|..+.++|.- +++.- ..
T Consensus 266 ~--~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~-~~ 342 (430)
T 2xyi_A 266 T--SKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASS-GT 342 (430)
T ss_dssp S--SSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEE-ET
T ss_pred C--CcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEE-eC
Confidence 1 1222221 111223356787766667777778999999999984 445554 45678899998632 33333 33
Q ss_pred CCeeEEEEEEeecC--------------ceeeeeeeccccCCc---chhhhhccceeEEEecCCceeEEEcccccc
Q 020740 254 SGHVPLKILSIEDG--------------TVLKSFNHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVRISLF 312 (322)
Q Consensus 254 ~~~iPlkIlsIedG--------------~~l~~f~~~L~~sk~---iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~ 312 (322)
.+. ++|+++.+. +.+..+. .+... +.|-..-.-.|+.=.++..|+|||+.+..+
T Consensus 343 d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~ 413 (430)
T 2xyi_A 343 DRR--LHVWDLSKIGEEQSTEDAEDGPPELLFIHG---GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVY 413 (430)
T ss_dssp TSC--CEEEEGGGTTCCCCHHHHHHCCTTEEEECC---CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHH
T ss_pred CCc--EEEEeCCCCccccCccccccCCcceEEEcC---CCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccccc
Confidence 333 677888762 2332221 11222 232222111566678999999999976543
No 111
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=94.48 E-value=2 Score=39.77 Aligned_cols=131 Identities=9% Similarity=-0.042 Sum_probs=76.9
Q ss_pred ceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceeeccc----CCCCeEEecCCCceEEEEec
Q 020740 137 EVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESL----KWPGFVEFDDVNGKVLTYSA 212 (322)
Q Consensus 137 EvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~~~L----~~PgFVEFDdvNgkilty~a 212 (322)
.-|.++=++.....|.++...++++ =.++.-+++....|+.....++.....+ ...--+.|...++..++-..
T Consensus 93 ~~v~~l~~spdg~~lav~~~sgs~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s 169 (434)
T 2oit_A 93 FPIHHLALSCDNLTLSACMMSSEYG---SIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCL 169 (434)
T ss_dssp SCEEEEEECTTSCEEEEEEEETTTE---EEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEE
T ss_pred CcccEEEEcCCCCEEEEEEeccCCC---ceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEE
Confidence 3488888887765555321123333 2344444444333322222333332222 22335678887788887778
Q ss_pred CCCeEEEEeccCcEEEEEec--ccceeeEEEc-CCEEEEEEecCCCeeEEEEEEeecCceeeeee
Q 020740 213 QDSIYKVFDLKNYTMLYSIS--DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (322)
Q Consensus 213 q~~~YrVfdlknYs~LYsIs--de~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~ 274 (322)
.|+..++||+++-..+.... ...|..+..+ +|-+|+.-...+. ++|+++. |+....+.
T Consensus 170 ~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~---v~iwd~~-~~~~~~~~ 230 (434)
T 2oit_A 170 ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT---VVQYLPT-LQEKKVIP 230 (434)
T ss_dssp TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSC---EEEECTT-CCEEEEEC
T ss_pred CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCc---EEEEccC-Cccccccc
Confidence 89999999999987766554 4578888888 4655555443332 5677776 66555443
No 112
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=94.12 E-value=2.4 Score=36.06 Aligned_cols=115 Identities=10% Similarity=0.148 Sum_probs=74.3
Q ss_pred ccCCCCeEEecCCCceEEEEecCCCeEEEEecc---CcEEEEEeccc-----------ceeeEEEc-CCEEEEEEecCCC
Q 020740 191 SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK---NYTMLYSISDK-----------NVQEIKIS-PGIMLLIFTKASG 255 (322)
Q Consensus 191 ~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlk---nYs~LYsIsde-----------~VqEIkIS-~Gimll~~q~~~~ 255 (322)
....|..+.|+.-...+.+.+..++..++||+. ..+.+..+... .+..+.++ +|- +++.....+
T Consensus 84 ~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~ 162 (347)
T 3hfq_A 84 PGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSD 162 (347)
T ss_dssp ESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTT
T ss_pred CCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCC
Confidence 356899999998777788877788999999997 56666666432 36678888 455 445444444
Q ss_pred eeEEEEEEee-cCceeeeeeeccccCCc---chhhhhccceeEEE-ecCCceeEEEccc
Q 020740 256 HVPLKILSIE-DGTVLKSFNHLLHRNKK---VDFIEQFNEKLLVK-QENENLQILDVRI 309 (322)
Q Consensus 256 ~iPlkIlsIe-dG~~l~~f~~~L~~sk~---iqFiE~f~EkLLIK-QE~~~LqI~Dl~~ 309 (322)
-+.++++. +|+........++.... +.|- .=+.+|++= ..+..+.+||+..
T Consensus 163 --~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s-pdg~~l~v~~~~~~~v~v~~~~~ 218 (347)
T 3hfq_A 163 --KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS-PDGQYAFLAGELSSQIASLKYDT 218 (347)
T ss_dssp --EEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC-TTSSEEEEEETTTTEEEEEEEET
T ss_pred --EEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC-CCCCEEEEEeCCCCEEEEEEecC
Confidence 45788888 77654322222222222 2221 224457774 5677899999874
No 113
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=94.10 E-value=2.2 Score=35.62 Aligned_cols=188 Identities=12% Similarity=0.085 Sum_probs=106.9
Q ss_pred hhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcce
Q 020740 108 VFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALF 187 (322)
Q Consensus 108 I~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LF 187 (322)
+++-...|.-.+||..|++.+-.+....... ++-++.+.+.+.+++. .++ +.... ++..|++ +.-
T Consensus 13 ~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~--~~~~s~dg~~l~~~~~--~~~----~i~~~---d~~~~~~----~~~ 77 (331)
T 3u4y_A 13 IVVEQHLRRISFFSTDTLEILNQITLGYDFV--DTAITSDCSNVVVTSD--FCQ----TLVQI---ETQLEPP----KVV 77 (331)
T ss_dssp EEEEGGGTEEEEEETTTCCEEEEEECCCCEE--EEEECSSSCEEEEEES--TTC----EEEEE---ECSSSSC----EEE
T ss_pred EEEecCCCeEEEEeCcccceeeeEEccCCcc--eEEEcCCCCEEEEEeC--CCC----eEEEE---ECCCCce----eEE
Confidence 3444567888899999999988877554444 7888877776665432 122 22222 2222221 122
Q ss_pred eecccCCCCe-EEecCCCceEEEEecCCC--eEEEEeccCcEEEEEecc-cceeeEEEcCC--EEEEEEecCCCeeEEEE
Q 020740 188 ESESLKWPGF-VEFDDVNGKVLTYSAQDS--IYKVFDLKNYTMLYSISD-KNVQEIKISPG--IMLLIFTKASGHVPLKI 261 (322)
Q Consensus 188 e~~~L~~PgF-VEFDdvNgkilty~aq~~--~YrVfdlknYs~LYsIsd-e~VqEIkIS~G--imll~~q~~~~~iPlkI 261 (322)
....-..|-. +-|+.-...+.+.+..++ ...+||+.+.+.+-.+.. .....+.++|. .+++.....+.. +.+
T Consensus 78 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~--i~~ 155 (331)
T 3u4y_A 78 AIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANT--VRR 155 (331)
T ss_dssp EEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTE--EEE
T ss_pred ecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCce--EEE
Confidence 3333456888 899886666664333334 899999999998777653 56788899854 343333333331 345
Q ss_pred EEeecCceeeee-eeccccCCcchhhh--hccceeEEEe-cCCceeEEEcccccc
Q 020740 262 LSIEDGTVLKSF-NHLLHRNKKVDFIE--QFNEKLLVKQ-ENENLQILDVRISLF 312 (322)
Q Consensus 262 lsIedG~~l~~f-~~~L~~sk~iqFiE--~f~EkLLIKQ-E~~~LqI~Dl~~~~~ 312 (322)
+++.++..+... ...+.....+.-+. .=+.+|++=. .+..+.+||+.+.+.
T Consensus 156 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 210 (331)
T 3u4y_A 156 FKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPEN 210 (331)
T ss_dssp EEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred EEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence 555433322221 11112122221121 1244576655 577899999988776
No 114
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=93.93 E-value=0.61 Score=38.29 Aligned_cols=147 Identities=7% Similarity=0.087 Sum_probs=83.9
Q ss_pred chhhhhhccccceeeecccccEEE---EecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCC
Q 020740 106 DIVFALAQSGVCAAFCRETNQRIC---FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDA 182 (322)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~~iC---~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~ 182 (322)
..++.-...|....||..+++... ........-|.++.....+..++.+.. .+.+ ..++ +-++..++
T Consensus 163 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~-~~i~-----lwd~~~~~--- 232 (318)
T 4ggc_A 163 RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSD-RHIR-----IWNVCSGA--- 232 (318)
T ss_dssp SEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTT-CEEE-----EEETTTCC---
T ss_pred CEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCC-CEEE-----EEeccccc---
Confidence 345555566778888887775321 223334445666777766666655332 2222 2222 22222221
Q ss_pred CCcceeecccCCCCeEEecCCCceEEEEec-CCCeEEEEeccCcEEEEEecc--cceeeEEEcC-CEEEEEEecCCCeeE
Q 020740 183 GFALFESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSISD--KNVQEIKISP-GIMLLIFTKASGHVP 258 (322)
Q Consensus 183 g~~LFe~~~L~~PgFVEFDdvNgkilty~a-q~~~YrVfdlknYs~LYsIsd--e~VqEIkIS~-Gimll~~q~~~~~iP 258 (322)
.......-...-.+.|...++.+++.+. .++..++||+++-+++.++.. ..|..+.++| |-+|+.- ...++
T Consensus 233 --~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~-s~D~~-- 307 (318)
T 4ggc_A 233 --CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA-AADET-- 307 (318)
T ss_dssp --EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE-ETTTE--
T ss_pred --ccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE-ecCCe--
Confidence 1222222333456778888888888765 689999999999999999973 5677888874 4443332 22222
Q ss_pred EEEEEeecC
Q 020740 259 LKILSIEDG 267 (322)
Q Consensus 259 lkIlsIedG 267 (322)
++|.++.+.
T Consensus 308 v~iWd~~~~ 316 (318)
T 4ggc_A 308 LRLWRCFEL 316 (318)
T ss_dssp EEEECCSCC
T ss_pred EEEEECCCC
Confidence 355555443
No 115
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=93.91 E-value=2.3 Score=35.04 Aligned_cols=54 Identities=13% Similarity=0.068 Sum_probs=36.0
Q ss_pred EEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEEcccccce
Q 020740 258 PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 258 PlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
.+.++++.+|+.+..+..- +.-..+.|-. =+.+|++-..+..|.+||+.+.+++
T Consensus 261 ~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~~ 314 (337)
T 1pby_B 261 VLESFDLEKNASIKRVPLP-HSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKK 314 (337)
T ss_dssp EEEEEETTTTEEEEEEECS-SCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEE
T ss_pred eEEEEECCCCcCcceecCC-CceeeEEECC-CCCEEEEEcCCCcEEEEECcCCcEE
Confidence 4678888899888766521 1112233221 2557888888899999999887654
No 116
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=93.83 E-value=3 Score=36.20 Aligned_cols=106 Identities=8% Similarity=0.193 Sum_probs=64.6
Q ss_pred eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEe----------cccceeeEEEcCC--EEEEEEecCCCeeEEEEEEe
Q 020740 197 FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI----------SDKNVQEIKISPG--IMLLIFTKASGHVPLKILSI 264 (322)
Q Consensus 197 FVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsI----------sde~VqEIkIS~G--imll~~q~~~~~iPlkIlsI 264 (322)
-+.|.. +|+.++.. .|+..++||+.+-...+.+ ....|..+.++|. -+|+.--... -++|+++
T Consensus 182 ~~~~~~-~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~ 256 (447)
T 3dw8_B 182 SISINS-DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKG---TIRLCDM 256 (447)
T ss_dssp EEEECT-TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTS---CEEEEET
T ss_pred EEEEcC-CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCC---eEEEEEC
Confidence 466776 45555544 7999999999965544442 2345788888864 3444433332 3689999
Q ss_pred ecCce----eeeeeeccc------------cCCcchhhhhccceeEEEecCCceeEEEccc
Q 020740 265 EDGTV----LKSFNHLLH------------RNKKVDFIEQFNEKLLVKQENENLQILDVRI 309 (322)
Q Consensus 265 edG~~----l~~f~~~L~------------~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~ 309 (322)
.+|+. +..+...-. .-..+.|-. -+.+|+.--+ ..++|||+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~-~~v~iwd~~~ 315 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH-SGRYMMTRDY-LSVKVWDLNM 315 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECT-TSSEEEEEES-SEEEEEETTC
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECC-CCCEEEEeeC-CeEEEEeCCC
Confidence 99986 444442110 111233322 3456666556 9999999987
No 117
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=93.79 E-value=0.81 Score=39.78 Aligned_cols=118 Identities=10% Similarity=0.183 Sum_probs=78.9
Q ss_pred cccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec----ccceeeEEEcCCEEEEEEecC----CCeeEEEE
Q 020740 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS----DKNVQEIKISPGIMLLIFTKA----SGHVPLKI 261 (322)
Q Consensus 190 ~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs----de~VqEIkIS~Gimll~~q~~----~~~iPlkI 261 (322)
..+.+|--+-||.-+|.+...+..++..++||..+=+++-.+. ...+..+.++||+++..-... ..-.-+.+
T Consensus 193 ~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~ 272 (329)
T 3fvz_A 193 GQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFV 272 (329)
T ss_dssp TEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEE
T ss_pred cccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEE
Confidence 3678899999999889999999999999999998667777773 345677888898775553211 01125788
Q ss_pred EEeecCceeeeeeec---cccCCcchhhhhccceeEEE-ecCCceeEEEccc
Q 020740 262 LSIEDGTVLKSFNHL---LHRNKKVDFIEQFNEKLLVK-QENENLQILDVRI 309 (322)
Q Consensus 262 lsIedG~~l~~f~~~---L~~sk~iqFiE~f~EkLLIK-QE~~~LqI~Dl~~ 309 (322)
++..+|+.+..+... +..-..|-| -.-+ .|||= ..+..+++||+..
T Consensus 273 ~~~~~g~~~~~~~~~~~~~~~p~~ia~-~~dG-~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 273 MNFSSGEIIDVFKPVRKHFDMPHDIVA-SEDG-TVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EETTTCCEEEEECCSSSCCSSEEEEEE-CTTS-EEEEEESSSCCEEEEEEEE
T ss_pred EEcCCCeEEEEEcCCCCccCCeeEEEE-CCCC-CEEEEECCCCEEEEEeCCc
Confidence 899999998876310 111111221 1112 56664 3566777777643
No 118
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=93.71 E-value=3.1 Score=35.89 Aligned_cols=204 Identities=11% Similarity=0.155 Sum_probs=110.9
Q ss_pred cceeEEeecc--chhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeee--
Q 020740 96 SKIIEIVAAR--DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTR-- 171 (322)
Q Consensus 96 S~V~EIv~a~--diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~-- 171 (322)
..|..+-... .+++.-..-|....||..+++.+..+.. +..-|.++=++..+..|++.|. |. .++.-.+.
T Consensus 77 ~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~-h~~~v~~v~~sp~~~~l~s~~~---d~--~i~~wd~~~~ 150 (343)
T 2xzm_R 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVG-HQSEVYSVAFSPDNRQILSAGA---ER--EIKLWNILGE 150 (343)
T ss_dssp SCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEEC-CCSCEEEEEECSSTTEEEEEET---TS--CEEEEESSSC
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcC-CCCcEEEEEECCCCCEEEEEcC---CC--EEEEEeccCC
Confidence 3455555443 3455555678999999999998887765 4456788888888777776541 21 12111110
Q ss_pred --------------hhhhH---hCC----CCCCCcceeec------------------ccCCCCe---EEecCCCceEEE
Q 020740 172 --------------IEYIR---RGK----PDAGFALFESE------------------SLKWPGF---VEFDDVNGKVLT 209 (322)
Q Consensus 172 --------------~e~i~---~gk----~~~g~~LFe~~------------------~L~~PgF---VEFDdvNgkilt 209 (322)
+.++. .++ ..+..++|-+. ...|++. +.|.. +|+.|+
T Consensus 151 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s~-~g~~l~ 229 (343)
T 2xzm_R 151 CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISP-NGKYIA 229 (343)
T ss_dssp EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTEEEEEEECCSSCEEEEEECT-TSSEEE
T ss_pred ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCceeEEEcCccccceEEEECC-CCCEEE
Confidence 00000 000 00000111110 1123333 34543 566666
Q ss_pred EecCCCeEEEEeccCcE-EEEEe-cccceeeEEEcCCEEEEEEecCCCeeEEEEEEeecCceeeeeeecc----------
Q 020740 210 YSAQDSIYKVFDLKNYT-MLYSI-SDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL---------- 277 (322)
Q Consensus 210 y~aq~~~YrVfdlknYs-~LYsI-sde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L---------- 277 (322)
--..|+..++||+.+.. .+..+ ....|..+.++|.--++.. ...+. ++|+++.+++.+.......
T Consensus 230 sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~-~~d~~--v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (343)
T 2xzm_R 230 TGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAV-GTDQG--VKIFNLMTQSKAPVCTIEAEPITKAEGQK 306 (343)
T ss_dssp EEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEE-EESSC--EEEEESSSCCSCSEEECCCCSGGGBTTBC
T ss_pred EEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEE-ECCCC--EEEEEeCCCCCCceEEeecCcchhhhhhc
Confidence 66789999999995433 22333 3456888888865433322 22333 6899999887655222110
Q ss_pred ccCCc---chhhhhccceeEEEecCCceeEEEcccc
Q 020740 278 HRNKK---VDFIEQFNEKLLVKQENENLQILDVRIS 310 (322)
Q Consensus 278 ~~sk~---iqFiE~f~EkLLIKQE~~~LqI~Dl~~~ 310 (322)
.+... +.| -.-+.+|+.==++..+++||+.+.
T Consensus 307 ~~~~~v~~~~~-sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 307 GKNPQCTSLAW-NALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CSCCCEEEEEE-CSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCCceEEEEE-CCCCCeEEEecCCceEEEEEEEcc
Confidence 01111 221 123456777778999999998653
No 119
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=93.19 E-value=1.1 Score=38.81 Aligned_cols=102 Identities=14% Similarity=0.213 Sum_probs=66.1
Q ss_pred CCceEEEEecCCCeEEEEeccCc------E-EEEEe--cccceeeEEEcC-CEEEEEEecCCCeeEEEEEEeecCceeee
Q 020740 203 VNGKVLTYSAQDSIYKVFDLKNY------T-MLYSI--SDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (322)
Q Consensus 203 vNgkilty~aq~~~YrVfdlknY------s-~LYsI--sde~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG~~l~~ 272 (322)
.+|+.|+-...|+..|+||+.+- . .+..+ ....|..+.++| |-+|+.- .... -++|.++++|+.+..
T Consensus 37 ~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~-s~D~--~v~lwd~~~~~~~~~ 113 (343)
T 2xzm_R 37 EDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS-SWDK--TLRLWDLRTGTTYKR 113 (343)
T ss_dssp CCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEE-ETTS--EEEEEETTSSCEEEE
T ss_pred CCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEE-cCCC--cEEEEECCCCcEEEE
Confidence 36777877788999999999752 2 23333 234577778875 3343332 2222 378999999999887
Q ss_pred eeeccccCCcchhhh--hccceeEEEecCCceeEEEcccc
Q 020740 273 FNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDVRIS 310 (322)
Q Consensus 273 f~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~ 310 (322)
+.. +..+|.=+. .-+.+|+.=-.+..+++||+...
T Consensus 114 ~~~---h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~ 150 (343)
T 2xzm_R 114 FVG---HQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE 150 (343)
T ss_dssp EEC---CCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC
T ss_pred EcC---CCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC
Confidence 652 233332222 23557777778999999999743
No 120
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=93.18 E-value=2.9 Score=33.91 Aligned_cols=160 Identities=15% Similarity=0.157 Sum_probs=96.0
Q ss_pred cccceeEEeec----cchhhhhhccccceeeecccc---------cEEEEecCCCCceEEEEeeecC--CCeEEEEEeEe
Q 020740 94 KRSKIIEIVAA----RDIVFALAQSGVCAAFCRETN---------QRICFLNVTADEVIRSLFYNKN--NDSLITVSVYA 158 (322)
Q Consensus 94 kRS~V~EIv~a----~diI~aL~~sG~c~af~r~tn---------~~iC~lN~s~dEvIrSiFyNk~--NdSlItvSvy~ 158 (322)
....|..+-.. ..+++.-...|....||..++ +.+..+.. +..-|.++-++.. ++.+++.+
T Consensus 56 ~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~--- 131 (351)
T 3f3f_A 56 HDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLND-SKGSLYSVKFAPAHLGLKLACLG--- 131 (351)
T ss_dssp CSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECC-CSSCEEEEEECCGGGCSEEEEEE---
T ss_pred CCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecc-cCCceeEEEEcCCCCCcEEEEec---
Confidence 45567776664 457777888899999999887 55667765 4456777877776 55555533
Q ss_pred cCCCceeeeeeeehhhhHhCCCCCCCcc---------eeecccCCCCeEEecCC--CceEEEEecCCCeEEEEeccCcEE
Q 020740 159 SDNFSSLRCRSTRIEYIRRGKPDAGFAL---------FESESLKWPGFVEFDDV--NGKVLTYSAQDSIYKVFDLKNYTM 227 (322)
Q Consensus 159 sd~fS~LkCr~~~~e~i~~gk~~~g~~L---------Fe~~~L~~PgFVEFDdv--Ngkilty~aq~~~YrVfdlknYs~ 227 (322)
.|. .++.- +++.++.-....+ .........--+.|+.. ++..++....++...+|+..+...
T Consensus 132 ~dg--~v~iw-----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~ 204 (351)
T 3f3f_A 132 NDG--ILRLY-----DALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKL 204 (351)
T ss_dssp TTC--EEEEE-----ECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCE
T ss_pred CCC--cEEEe-----cCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCce
Confidence 222 23322 2333332111111 00112222334566654 577777788888888888887764
Q ss_pred --EEEec--ccceeeEEEcCC-----EEEEEEecCCCeeEEEEEEeecC
Q 020740 228 --LYSIS--DKNVQEIKISPG-----IMLLIFTKASGHVPLKILSIEDG 267 (322)
Q Consensus 228 --LYsIs--de~VqEIkIS~G-----imll~~q~~~~~iPlkIlsIedG 267 (322)
+..+. ...|..+.++|. -+|+.--... . ++|.++.++
T Consensus 205 ~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg-~--i~iwd~~~~ 250 (351)
T 3f3f_A 205 HVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG-R--IRIFKITEK 250 (351)
T ss_dssp EEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS-C--EEEEEEEEC
T ss_pred eeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC-e--EEEEeCCCC
Confidence 55554 456888999877 4544443332 2 677888776
No 121
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=93.14 E-value=4 Score=35.44 Aligned_cols=183 Identities=12% Similarity=0.155 Sum_probs=105.8
Q ss_pred chhhhhhccccceeeecccccEEE--EecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCC
Q 020740 106 DIVFALAQSGVCAAFCRETNQRIC--FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG 183 (322)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~~iC--~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g 183 (322)
.+++.-...|....||..+++.+| .+...+..-|.++=++.....|++.| .|. .++.-... .++.
T Consensus 29 ~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s---~D~--~v~iw~~~-----~~~~--- 95 (345)
T 3fm0_A 29 TLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASAS---FDA--TTCIWKKN-----QDDF--- 95 (345)
T ss_dssp SCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEE---TTS--CEEEEEEC-----CC-E---
T ss_pred CEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEE---CCC--cEEEEEcc-----CCCe---
Confidence 345555667889999999998777 35567888899999998777776644 222 22222111 0000
Q ss_pred CcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCc---EEEEEec--ccceeeEEEcC-CEEEEEEecCC
Q 020740 184 FALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNY---TMLYSIS--DKNVQEIKISP-GIMLLIFTKAS 254 (322)
Q Consensus 184 ~~LFe~~~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlknY---s~LYsIs--de~VqEIkIS~-Gimll~~q~~~ 254 (322)
..+. .--.|.+ -+.|.. +|+.++-...|+..++||+.+- .++..+. ...|..+..+| |-+|+.--..
T Consensus 96 ~~~~--~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d- 171 (345)
T 3fm0_A 96 ECVT--TLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYD- 171 (345)
T ss_dssp EEEE--EECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETT-
T ss_pred EEEE--EccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCC-
Confidence 0000 0011222 245655 5667777778999999999764 3444443 34577777774 3333333222
Q ss_pred CeeEEEEEEeecCceeeeeeeccccCCcc---hhhhhccceeEEEecCCceeEEEccc
Q 020740 255 GHVPLKILSIEDGTVLKSFNHLLHRNKKV---DFIEQFNEKLLVKQENENLQILDVRI 309 (322)
Q Consensus 255 ~~iPlkIlsIedG~~l~~f~~~L~~sk~i---qFiE~f~EkLLIKQE~~~LqI~Dl~~ 309 (322)
+ -++|+++.+++......+. .+...| .|- .-+.+|+.=-++..++|||+..
T Consensus 172 ~--~i~~w~~~~~~~~~~~~~~-~h~~~v~~l~~s-p~g~~l~s~s~D~~v~iW~~~~ 225 (345)
T 3fm0_A 172 D--TVKLYREEEDDWVCCATLE-GHESTVWSLAFD-PSGQRLASCSDDRTVRIWRQYL 225 (345)
T ss_dssp S--CEEEEEEETTEEEEEEEEC-CCSSCEEEEEEC-TTSSEEEEEETTSCEEEEEEEC
T ss_pred C--cEEEEEecCCCEEEEEEec-CCCCceEEEEEC-CCCCEEEEEeCCCeEEEecccc
Confidence 2 2578888887644322211 223332 222 2356777778999999999743
No 122
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=93.11 E-value=1.3 Score=37.57 Aligned_cols=107 Identities=17% Similarity=0.354 Sum_probs=67.5
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccC--cEEEEEec--ccceeeEEEcC---CEEEEEEecCCCeeEEEEEEeecCc--
Q 020740 198 VEFDDVNGKVLTYSAQDSIYKVFDLKN--YTMLYSIS--DKNVQEIKISP---GIMLLIFTKASGHVPLKILSIEDGT-- 268 (322)
Q Consensus 198 VEFDdvNgkilty~aq~~~YrVfdlkn--Ys~LYsIs--de~VqEIkIS~---Gimll~~q~~~~~iPlkIlsIedG~-- 268 (322)
+.|+ .+|+.|+-...|++.++||+.+ ..++..+. ...|..+.+++ |-+|+.--.- .. ++|.++++|+
T Consensus 15 ~~~s-~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D-~~--v~iWd~~~~~~~ 90 (297)
T 2pm7_B 15 AVMD-YYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD-GK--VMIWKEENGRWS 90 (297)
T ss_dssp EEEC-TTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT-TE--EEEEEBSSSCBC
T ss_pred EEEC-CCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCC-CE--EEEEEcCCCceE
Confidence 3565 4567777777899999999974 45566654 45677888863 5554443322 22 5788998885
Q ss_pred eeeeeeeccccCCc---chhhhh-ccceeEEEecCCceeEEEccccc
Q 020740 269 VLKSFNHLLHRNKK---VDFIEQ-FNEKLLVKQENENLQILDVRISL 311 (322)
Q Consensus 269 ~l~~f~~~L~~sk~---iqFiE~-f~EkLLIKQE~~~LqI~Dl~~~~ 311 (322)
.+..+. .| ... +.|--. .+..|+.=-.+..+++||+.+.+
T Consensus 91 ~~~~~~--~h-~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~ 134 (297)
T 2pm7_B 91 QIAVHA--VH-SASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENG 134 (297)
T ss_dssp CCEEEC--CC-SSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSS
T ss_pred EEEEee--cC-CCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCC
Confidence 232222 12 232 233211 24577888899999999998753
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=92.72 E-value=1 Score=43.27 Aligned_cols=111 Identities=13% Similarity=0.139 Sum_probs=65.6
Q ss_pred CceEEEEecCCCeEEEEeccCcEEEEEecccc-----eeeEEEc-CCEEEEEEecC---------CCeeEEEEEEeecCc
Q 020740 204 NGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN-----VQEIKIS-PGIMLLIFTKA---------SGHVPLKILSIEDGT 268 (322)
Q Consensus 204 Ngkilty~aq~~~YrVfdlknYs~LYsIsde~-----VqEIkIS-~Gimll~~q~~---------~~~iPlkIlsIedG~ 268 (322)
++..++=...|++.|+||+++=+++..+...+ +.-+.+| +|.+++....+ ..---+++.+..+|+
T Consensus 192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk 271 (356)
T 2w18_A 192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTL 271 (356)
T ss_dssp STTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTE
T ss_pred CCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCE
Confidence 44555555679999999999999999996422 2222355 56665543321 122356888999999
Q ss_pred eeeeeeeccccCCcchhhhhc-cceeEEE-ecCCceeEEEccccccee
Q 020740 269 VLKSFNHLLHRNKKVDFIEQF-NEKLLVK-QENENLQILDVRISLFLP 314 (322)
Q Consensus 269 ~l~~f~~~L~~sk~iqFiE~f-~EkLLIK-QE~~~LqI~Dl~~~~~~~ 314 (322)
.+..+..-++......|++-- ...+++- =.|..++|||+.+.+.+.
T Consensus 272 ~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~ 319 (356)
T 2w18_A 272 SVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTA 319 (356)
T ss_dssp EEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEE
T ss_pred EEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEE
Confidence 887543222322222233110 0112333 268899999999987653
No 124
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=92.65 E-value=2.2 Score=36.13 Aligned_cols=159 Identities=13% Similarity=0.175 Sum_probs=85.0
Q ss_pred CCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceeecccCCCCe---EEecC-CCceEEE
Q 020740 134 TADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGF---VEFDD-VNGKVLT 209 (322)
Q Consensus 134 s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~~~L~~PgF---VEFDd-vNgkilt 209 (322)
.+...|+++-++.+..-|++.| .|. .++.-.+. .+ .+.++- .--.|.+- +.|.. .+|+.|+
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s---~D~--~v~iw~~~-----~~---~~~~~~--~l~gH~~~V~~v~~s~~~~g~~l~ 71 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCS---SDK--TIKIFEVE-----GE---THKLID--TLTGHEGPVWRVDWAHPKFGTILA 71 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEE---TTS--CEEEEEBC-----SS---CBCCCE--EECCCSSCEEEEEECCGGGCSEEE
T ss_pred CCcCceEEEEECCCCCEEEEEe---CCC--EEEEEecC-----CC---CcEEEE--EEccccCCeEEEEecCCCcCCEEE
Confidence 3556788888887766665533 222 23332221 00 001110 01124443 45643 3477777
Q ss_pred EecCCCeEEEEeccCc--EEEEEe--cccceeeEEEcC---CEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCc
Q 020740 210 YSAQDSIYKVFDLKNY--TMLYSI--SDKNVQEIKISP---GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKK 282 (322)
Q Consensus 210 y~aq~~~YrVfdlknY--s~LYsI--sde~VqEIkIS~---Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~ 282 (322)
-...|+..|+||+.+- ..+..+ ....|..+.++| |-+|+.--... -++|.++.++........ ..+...
T Consensus 72 s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~---~v~~wd~~~~~~~~~~~~-~~h~~~ 147 (297)
T 2pm7_B 72 SCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDG---KVSVVEFKENGTTSPIII-DAHAIG 147 (297)
T ss_dssp EEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTS---EEEEEEBCSSSCBCCEEE-ECCSSC
T ss_pred EEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCC---cEEEEEecCCCceeeeee-ecccCc
Confidence 7788999999999864 345544 346788888887 55555443322 246777776642211111 011111
Q ss_pred c---hhhhh------------ccceeEEEecCCceeEEEccccc
Q 020740 283 V---DFIEQ------------FNEKLLVKQENENLQILDVRISL 311 (322)
Q Consensus 283 i---qFiE~------------f~EkLLIKQE~~~LqI~Dl~~~~ 311 (322)
+ .|-.. -+.+|+.=-++..+++||+.+.+
T Consensus 148 v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~ 191 (297)
T 2pm7_B 148 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA 191 (297)
T ss_dssp EEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT
T ss_pred cceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC
Confidence 1 11100 12356666789999999998754
No 125
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=92.59 E-value=1.5 Score=37.59 Aligned_cols=106 Identities=17% Similarity=0.238 Sum_probs=67.1
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCcE--EEEEec--ccceeeEEEcC---CEEEEEEecCCCeeEEEEEEeecCc--
Q 020740 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSIS--DKNVQEIKISP---GIMLLIFTKASGHVPLKILSIEDGT-- 268 (322)
Q Consensus 198 VEFDdvNgkilty~aq~~~YrVfdlknYs--~LYsIs--de~VqEIkIS~---Gimll~~q~~~~~iPlkIlsIedG~-- 268 (322)
+.|+. +|+.|+-...|+..|+||+++-. ++..+. ...|..+..++ |-+|+.--.-+. ++|.++++|+
T Consensus 19 v~~s~-~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~---v~iWd~~~~~~~ 94 (316)
T 3bg1_A 19 AQMDY-YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRK---VIIWREENGTWE 94 (316)
T ss_dssp EEECG-GGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSC---EEEECCSSSCCC
T ss_pred eeEcC-CCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCE---EEEEECCCCcce
Confidence 45664 56667667789999999998754 455554 45688888863 555444433322 6788998885
Q ss_pred eeeeeeeccccCCcc---hhhhh-ccceeEEEecCCceeEEEcccc
Q 020740 269 VLKSFNHLLHRNKKV---DFIEQ-FNEKLLVKQENENLQILDVRIS 310 (322)
Q Consensus 269 ~l~~f~~~L~~sk~i---qFiE~-f~EkLLIKQE~~~LqI~Dl~~~ 310 (322)
.+..+. .+...| .|-.. .+..|..=-.+..+++||+...
T Consensus 95 ~~~~~~---~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~ 137 (316)
T 3bg1_A 95 KSHEHA---GHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGE 137 (316)
T ss_dssp EEEEEC---CCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSS
T ss_pred EEEEcc---CCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCC
Confidence 333222 123333 33221 1445666678999999999875
No 126
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=92.41 E-value=1.2 Score=42.74 Aligned_cols=111 Identities=12% Similarity=0.081 Sum_probs=80.7
Q ss_pred CCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec-ccceeeEEEc-CCEEEEEEecCCCeeEEEEEEe--ecCc
Q 020740 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSI--EDGT 268 (322)
Q Consensus 193 ~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs-de~VqEIkIS-~Gimll~~q~~~~~iPlkIlsI--edG~ 268 (322)
..|.+. ||. .+++++-+..++...|||..+-+++-.|. ...+.-+.+| +|-.|+..... +. +.++++ .||+
T Consensus 139 ~~~~~~-~~p-~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~d-~~--V~v~D~~~~t~~ 213 (543)
T 1nir_A 139 KKQLND-LDL-PNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRD-AR--IDMIDLWAKEPT 213 (543)
T ss_dssp SSCCSC-CCG-GGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEETT-SE--EEEEETTSSSCE
T ss_pred cccccc-cCC-CCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECCC-Ce--EEEEECcCCCCc
Confidence 356665 765 56888888899999999999999998887 5668888898 46666666655 33 788999 8999
Q ss_pred eeeeeeeccccCCcchhhhh------ccceeEEEec-CCceeEEEcccccc
Q 020740 269 VLKSFNHLLHRNKKVDFIEQ------FNEKLLVKQE-NENLQILDVRISLF 312 (322)
Q Consensus 269 ~l~~f~~~L~~sk~iqFiE~------f~EkLLIKQE-~~~LqI~Dl~~~~~ 312 (322)
++..+.. ...+.-+.. =+.+|++=-+ +..+.|||..+.+.
T Consensus 214 ~~~~i~~----g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~ 260 (543)
T 1nir_A 214 KVAEIKI----GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP 260 (543)
T ss_dssp EEEEEEC----CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE
T ss_pred EEEEEec----CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc
Confidence 8887652 222222332 2456777764 78999999877554
No 127
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=91.82 E-value=1.9 Score=38.46 Aligned_cols=109 Identities=20% Similarity=0.210 Sum_probs=71.4
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCcEEEEE--e-----cccceeeEEEcC---------CEEEEEEecCCCeeEEEE
Q 020740 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYS--I-----SDKNVQEIKISP---------GIMLLIFTKASGHVPLKI 261 (322)
Q Consensus 198 VEFDdvNgkilty~aq~~~YrVfdlknYs~LYs--I-----sde~VqEIkIS~---------Gimll~~q~~~~~iPlkI 261 (322)
..+...+++.++--..|++.|+||+++-++... + -...|..+.++| |.+|+.--.-+ -++|
T Consensus 94 ~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~---tv~~ 170 (393)
T 4gq1_A 94 VNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC---TLII 170 (393)
T ss_dssp ---CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS---EEEE
T ss_pred eeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC---eEEE
Confidence 445566677888888899999999999875432 1 146799999985 66655544333 3689
Q ss_pred EEeecCceeeeeeeccccCCcchhhhh--ccc-eeEEEecCCceeEEEcccccc
Q 020740 262 LSIEDGTVLKSFNHLLHRNKKVDFIEQ--FNE-KLLVKQENENLQILDVRISLF 312 (322)
Q Consensus 262 lsIedG~~l~~f~~~L~~sk~iqFiE~--f~E-kLLIKQE~~~LqI~Dl~~~~~ 312 (322)
.++.++..+..+.- | ..++-=+.- -+. .|+.--++..+++||+.+.+.
T Consensus 171 Wd~~~~~~~~~~~~--~-~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~ 221 (393)
T 4gq1_A 171 WRLTDEGPILAGYP--L-SSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLS 221 (393)
T ss_dssp EEEETTEEEEEEEE--C-SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-
T ss_pred EECCCCceeeeecC--C-CCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcc
Confidence 99999887765542 2 233322221 233 466667899999999987654
No 128
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=91.55 E-value=1.4 Score=39.26 Aligned_cols=152 Identities=6% Similarity=0.050 Sum_probs=84.9
Q ss_pred hhhhhhccccceeeecccccEEE---EecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCC
Q 020740 107 IVFALAQSGVCAAFCRETNQRIC---FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG 183 (322)
Q Consensus 107 iI~aL~~sG~c~af~r~tn~~iC---~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g 183 (322)
.++.-..-|....++..+++... .........|.++-++.....++.+ +..+.| .+++. =++..|+.
T Consensus 244 ~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~-~~gs~D-~~I~i-----wd~~t~~~--- 313 (420)
T 4gga_A 244 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLAT-GGGTSD-RHIRI-----WNVCSGAC--- 313 (420)
T ss_dssp EEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEE-EECTTT-CEEEE-----EETTTTEE---
T ss_pred eeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEE-EeecCC-CEEEE-----EeCCcccc---
Confidence 34444445666667766654321 1223344456777777666666543 333433 12222 12233321
Q ss_pred CcceeecccCCCCeEEecCCCceEEEEec-CCCeEEEEeccCcEEEEEecc--cceeeEEEcC-CEEEEEEecCCCeeEE
Q 020740 184 FALFESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSISD--KNVQEIKISP-GIMLLIFTKASGHVPL 259 (322)
Q Consensus 184 ~~LFe~~~L~~PgFVEFDdvNgkilty~a-q~~~YrVfdlknYs~LYsIsd--e~VqEIkIS~-Gimll~~q~~~~~iPl 259 (322)
+..-..-..+--+.|......+++.+. .++..+|||+.+.+++.++.. ..|..+.+|| |-+|+.-- ...+ +
T Consensus 314 --~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s-~D~t--v 388 (420)
T 4gga_A 314 --LSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAA-ADET--L 388 (420)
T ss_dssp --EEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEE-TTTE--E
T ss_pred --ceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEe-cCCe--E
Confidence 222111222334556777777777665 689999999999999999973 5688888884 55544432 2333 5
Q ss_pred EEEEeecCceeeee
Q 020740 260 KILSIEDGTVLKSF 273 (322)
Q Consensus 260 kIlsIedG~~l~~f 273 (322)
+|.++.+..+....
T Consensus 389 riWdv~~~~~~~~~ 402 (420)
T 4gga_A 389 RLWRCFELDPARRR 402 (420)
T ss_dssp EEECCSCSSCC---
T ss_pred EEEECCCCCccchh
Confidence 77888776655543
No 129
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=91.49 E-value=1.8 Score=38.61 Aligned_cols=107 Identities=9% Similarity=0.080 Sum_probs=62.4
Q ss_pred CCceEEEEecCCCeEEEEeccCcEEEEEe--cccceeeEEEcC-C-EEEEEEecCCCeeEEEEEEeecCceeeeeeecc-
Q 020740 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKISP-G-IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLL- 277 (322)
Q Consensus 203 vNgkilty~aq~~~YrVfdlknYs~LYsI--sde~VqEIkIS~-G-imll~~q~~~~~iPlkIlsIedG~~l~~f~~~L- 277 (322)
.+|++|+--..|++.||||+++-..+..+ -...|..+..+| | .+|+.- ..... ++|.++.+|+.........
T Consensus 154 ~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~-~~d~~--v~~wd~~t~~~~~~~~~~~~ 230 (393)
T 4gq1_A 154 LAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVG-ERNGN--IRIFDWTLNLSAEENSQTEL 230 (393)
T ss_dssp EEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEE-ETTSE--EEEEETTCCC----------
T ss_pred CCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEec-CCCCE--EEEEECCCCcccccccccCC
Confidence 36888988889999999999887754433 246677888886 3 344433 33333 5788998887765432100
Q ss_pred ---------------------ccCC---cchhhhhccceeEEEecCCceeEEEcccccc
Q 020740 278 ---------------------HRNK---KVDFIEQFNEKLLVKQENENLQILDVRISLF 312 (322)
Q Consensus 278 ---------------------~~sk---~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~ 312 (322)
.+.. .+.|-..-+..|+---.++.+++||+...+.
T Consensus 231 ~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~ 289 (393)
T 4gq1_A 231 VKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANND 289 (393)
T ss_dssp CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----
T ss_pred cccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCC
Confidence 0111 1223334456677777899999999987653
No 130
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=91.23 E-value=5.5 Score=32.82 Aligned_cols=117 Identities=11% Similarity=0.142 Sum_probs=72.4
Q ss_pred CCCCeEEecCCCceEEEEecCCCeEEEEecc----CcEEEEEec-ccceeeEEEcC-CEEEEEEecCCCeeEEEEEEeec
Q 020740 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK----NYTMLYSIS-DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIED 266 (322)
Q Consensus 193 ~~PgFVEFDdvNgkilty~aq~~~YrVfdlk----nYs~LYsIs-de~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIed 266 (322)
..|..+.|+.....+.+.+..++..++|++. ....+-.+. ...+..+.++| |-.|++.....+. +.++++.+
T Consensus 38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~--i~~~d~~~ 115 (343)
T 1ri6_A 38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGN--VSVTRLED 115 (343)
T ss_dssp SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTE--EEEEEEET
T ss_pred CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCe--EEEEECCC
Confidence 4688899987655566666666999999997 444554543 23788888884 5445555544444 57788844
Q ss_pred C---ceeeeeeeccccCCcchhhhhccceeEEEe-cCCceeEEEccc-ccce
Q 020740 267 G---TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRI-SLFL 313 (322)
Q Consensus 267 G---~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQ-E~~~LqI~Dl~~-~~~~ 313 (322)
| +.+..+.. ...-..+.| -.-+.+|++-- .+..+.+||+.+ .++.
T Consensus 116 ~~~~~~~~~~~~-~~~~~~~~~-s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 165 (343)
T 1ri6_A 116 GLPVGVVDVVEG-LDGCHSANI-SPDNRTLWVPALKQDRICLFTVSDDGHLV 165 (343)
T ss_dssp TEEEEEEEEECC-CTTBCCCEE-CTTSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred CccccccccccC-CCCceEEEE-CCCCCEEEEecCCCCEEEEEEecCCCcee
Confidence 4 34433321 111112222 12255788877 788999999987 5554
No 131
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=90.15 E-value=5.8 Score=34.40 Aligned_cols=111 Identities=11% Similarity=0.224 Sum_probs=69.1
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCc--EEEEEec--ccceeeEEEcC-CEEEEEEecCCCeeEEEEEEeecCceeee
Q 020740 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNY--TMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (322)
Q Consensus 198 VEFDdvNgkilty~aq~~~YrVfdlknY--s~LYsIs--de~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG~~l~~ 272 (322)
+.|.. +|+.|+.-..|+..++||+.+- +++..+. ...|..+.++| |-+|+.--.-. -++|.++.++.....
T Consensus 67 ~~~sp-~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~---~v~iwd~~~~~~~~~ 142 (345)
T 3fm0_A 67 VAWSP-CGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK---SVWVWEVDEEDEYEC 142 (345)
T ss_dssp EEECT-TSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEEEEECTTSCEEE
T ss_pred EEECC-CCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCC---eEEEEECCCCCCeEE
Confidence 45654 5667777778999999998754 5666665 35688888885 55544443333 267888887754332
Q ss_pred eeeccccCCcchhhh--hccceeEEEecCCceeEEEcccccc
Q 020740 273 FNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDVRISLF 312 (322)
Q Consensus 273 f~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~~ 312 (322)
...+-.+..++.-+. .-++.|+.=-.+..+++||+.+.+.
T Consensus 143 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~ 184 (345)
T 3fm0_A 143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW 184 (345)
T ss_dssp EEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE
T ss_pred EEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE
Confidence 221112233332221 1245677777899999999987653
No 132
>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}
Probab=89.77 E-value=0.38 Score=40.24 Aligned_cols=61 Identities=18% Similarity=0.317 Sum_probs=51.4
Q ss_pred CcEEEEEecccceeeEEEcCCEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchh
Q 020740 224 NYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (322)
Q Consensus 224 nYs~LYsIsde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqF 285 (322)
+-+++..++-+.+.++.+.+|.++.+..+....+|..|.++.+.+.+.+|||.|. -+.+.|
T Consensus 77 ~~~~v~~v~~~~f~~~~~~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLA-G~~L~F 137 (151)
T 2kr7_A 77 ESSYLQEVPRDQFEGIELEKGMSVFGQTEDNQTIQAIIKDFSATHVMVDYNHPLA-GKTLAF 137 (151)
T ss_dssp CSCEEEEEEGGGGTTSCCCTTCEEEEEETTTEEEEEEEEEECSSEEEEEECCTTS-CCCEEE
T ss_pred CcceEEEEcHHHcCCCCCccCCEEEEECCCCCEEEEEEEEECCCEEEEECCCcCC-CCEEEE
Confidence 4457888888888667888999988877777779999999999999999999998 666665
No 133
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=89.50 E-value=10 Score=33.11 Aligned_cols=195 Identities=10% Similarity=-0.024 Sum_probs=113.0
Q ss_pred EEeeccc-hhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEe-EecCCCceeeeeeeehhhhHh
Q 020740 100 EIVAARD-IVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSV-YASDNFSSLRCRSTRIEYIRR 177 (322)
Q Consensus 100 EIv~a~d-iI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSv-y~sd~fS~LkCr~~~~e~i~~ 177 (322)
.|....+ +.++-..+|.-.++|..|++.+-.+- ...-.+.|.+...+ . +.||. + + ..+ ..++. ..
T Consensus 48 ~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i~--~~~~p~~i~~~~~g-~-lyv~~~~---~-~~v--~~iD~---~t 114 (328)
T 3dsm_A 48 SMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRIT--GFTSPRYIHFLSDE-K-AYVTQIW---D-YRI--FIINP---KT 114 (328)
T ss_dssp EEEEETTEEEEEEGGGTEEEEEETTTCCEEEEEE--CCSSEEEEEEEETT-E-EEEEEBS---C-SEE--EEEET---TT
T ss_pred EEEEECCEEEEEEcCCCEEEEEECcccEEEEEcC--CCCCCcEEEEeCCC-e-EEEEECC---C-CeE--EEEEC---CC
Confidence 3433333 34444457888999999999888773 23446677775444 4 34333 2 1 112 12211 11
Q ss_pred CCCCCCCcce-eecccCCCCeEEecCCCceEEEEec-CCCeEEEEeccCcEEEEEec-ccceeeEEEcC-CEEEEEEecC
Q 020740 178 GKPDAGFALF-ESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSIS-DKNVQEIKISP-GIMLLIFTKA 253 (322)
Q Consensus 178 gk~~~g~~LF-e~~~L~~PgFVEFDdvNgkilty~a-q~~~YrVfdlknYs~LYsIs-de~VqEIkIS~-Gimll~~q~~ 253 (322)
+++....++= ......+|.-+.+ .++++...+. .++...|||+++-+.+-.|. ......|.+++ |-+++.-...
T Consensus 115 ~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~ 192 (328)
T 3dsm_A 115 YEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGG 192 (328)
T ss_dssp TEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCB
T ss_pred CeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCC
Confidence 1110000000 0112237888888 3788888877 48899999999998877765 34567788885 7765555443
Q ss_pred CCe-------eEEEEEEeecCceeeeeeeccccCCcchhhhhc--cceeEEEecCCceeEEEcccccce
Q 020740 254 SGH-------VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 254 ~~~-------iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f--~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
... --+.+++..||+.+..+. ++....+.-|-.- +..|++=-. .+.+||+.+.++.
T Consensus 193 ~~~~~~~~~~~~v~~id~~t~~v~~~~~--~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~ 257 (328)
T 3dsm_A 193 YEGSPYGYEAPSLYRIDAETFTVEKQFK--FKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVP 257 (328)
T ss_dssp CTTCSSCBCCCEEEEEETTTTEEEEEEE--CCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCC
T ss_pred ccCCccccCCceEEEEECCCCeEEEEEe--cCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCcee
Confidence 221 236788999999887665 2222223333333 566776433 8889999877654
No 134
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=88.92 E-value=1.8 Score=40.07 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=66.1
Q ss_pred EEecCCCceEEE----EecCCCeEEEEeccCc--------EEEEEec-----ccceeeEEEcC--CEEEEEEecCCCeeE
Q 020740 198 VEFDDVNGKVLT----YSAQDSIYKVFDLKNY--------TMLYSIS-----DKNVQEIKISP--GIMLLIFTKASGHVP 258 (322)
Q Consensus 198 VEFDdvNgkilt----y~aq~~~YrVfdlknY--------s~LYsIs-----de~VqEIkIS~--Gimll~~q~~~~~iP 258 (322)
+.|+.. |+.|+ -...|+..+|||+.+. ..++.+. ...|..+..+| +.+|+.--..+.
T Consensus 98 l~~spd-g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~--- 173 (434)
T 2oit_A 98 LALSCD-NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS--- 173 (434)
T ss_dssp EEECTT-SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC---
T ss_pred EEEcCC-CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe---
Confidence 466654 55555 3456899999999876 3333332 56788999986 345444433332
Q ss_pred EEEEEeecCceeeeeeeccccCCc---chhhhhccceeEEEecCCceeEEEcc
Q 020740 259 LKILSIEDGTVLKSFNHLLHRNKK---VDFIEQFNEKLLVKQENENLQILDVR 308 (322)
Q Consensus 259 lkIlsIedG~~l~~f~~~L~~sk~---iqFiE~f~EkLLIKQE~~~LqI~Dl~ 308 (322)
++|.++.+++.+.... .+... +.|-- -+.+|+.=-.+..+++||++
T Consensus 174 v~iwD~~~~~~~~~~~---~~~~~v~~v~wsp-dg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 174 IAVLQVTETVKVCATL---PSTVAVTSVCWSP-KGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp EEEEEESSSEEEEEEE---CGGGCEEEEEECT-TSSCEEEEETTSCEEEECTT
T ss_pred EEEEEcCCCcceeecc---CCCCceeEEEEcC-CCCEEEEEcCCCcEEEEccC
Confidence 6899999996654332 11222 23322 26788888899999999998
No 135
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=88.74 E-value=12 Score=33.03 Aligned_cols=158 Identities=15% Similarity=0.199 Sum_probs=88.7
Q ss_pred cceeEEeeccc-hhhhhhccccceeeecccccEEEE-ecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehh
Q 020740 96 SKIIEIVAARD-IVFALAQSGVCAAFCRETNQRICF-LNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIE 173 (322)
Q Consensus 96 S~V~EIv~a~d-iI~aL~~sG~c~af~r~tn~~iC~-lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e 173 (322)
..|..+-+..| -.++-+-.+-...++..+++.++. ....+...|+++=+..++..+++.|.-.. .....+..+..
T Consensus 177 ~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~---~~~~i~~~~~~ 253 (365)
T 4h5i_A 177 GEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKG---KGIVLTKISIK 253 (365)
T ss_dssp SCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSS---CCEEEEEEEEE
T ss_pred CceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCc---ceeEEeecccc
Confidence 44555555432 222222234445666677777664 44556778899988877777777653221 11222222111
Q ss_pred hhHhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec---ccceeeEEEcC-CEE
Q 020740 174 YIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKNVQEIKISP-GIM 246 (322)
Q Consensus 174 ~i~~gk~~~g~~LFe~~~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs---de~VqEIkIS~-Gim 246 (322)
.++. ..+-....-.+.+ -+.|.. +|+.|+--..|+..++||+++.+++..+. ...|..+.+|| |-+
T Consensus 254 ---~~~~---~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~ 326 (365)
T 4h5i_A 254 ---SGNT---SVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTY 326 (365)
T ss_dssp ---TTEE---EEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCE
T ss_pred ---ccee---cceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCE
Confidence 1000 0000001111222 234544 67888877889999999999999999874 35688899985 555
Q ss_pred EEEEecCCCeeEEEEEEeec
Q 020740 247 LLIFTKASGHVPLKILSIED 266 (322)
Q Consensus 247 ll~~q~~~~~iPlkIlsIed 266 (322)
|+. --..++ ++|.+|.+
T Consensus 327 laS-~S~D~t--vrvw~ip~ 343 (365)
T 4h5i_A 327 VAS-VSAANT--IHIIKLPL 343 (365)
T ss_dssp EEE-EETTSE--EEEEECCT
T ss_pred EEE-EeCCCe--EEEEEcCC
Confidence 443 333444 47888753
No 136
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=88.68 E-value=11 Score=32.29 Aligned_cols=161 Identities=14% Similarity=0.182 Sum_probs=81.8
Q ss_pred cCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceeecccCCCCe---EEecC-CCceE
Q 020740 132 NVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWPGF---VEFDD-VNGKV 207 (322)
Q Consensus 132 N~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~~~L~~PgF---VEFDd-vNgki 207 (322)
-..+...|.++=++.+..-|++.| .|. .++.-.+ ..|+. ..+. .--.|.+- +.|.. .+|..
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs---~D~--~v~lwd~-----~~~~~---~~~~--~l~gH~~~V~~v~~~~~~~~~~ 73 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCS---SDR--SVKIFDV-----RNGGQ---ILIA--DLRGHEGPVWQVAWAHPMYGNI 73 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEE---TTT--EEEEEEE-----ETTEE---EEEE--EEECCSSCEEEEEECCGGGSSC
T ss_pred cccccCeEEEeeEcCCCCEEEEEe---CCC--eEEEEEe-----cCCCc---EEEE--EEcCCCccEEEEEeCCCCCCCE
Confidence 345666788888887666655533 222 2332222 11110 0010 01124443 45643 34667
Q ss_pred EEEecCCCeEEEEeccCc--EEEEEec--ccceeeEEEcC---CEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccC
Q 020740 208 LTYSAQDSIYKVFDLKNY--TMLYSIS--DKNVQEIKISP---GIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRN 280 (322)
Q Consensus 208 lty~aq~~~YrVfdlknY--s~LYsIs--de~VqEIkIS~---Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~s 280 (322)
|+-...|+..++||+++- ..++.+. ...|..+.++| |.+|+.--.. .. ++|.++.++........+-.+.
T Consensus 74 l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D-~~--i~lwd~~~~~~~~~~~~~~~h~ 150 (316)
T 3bg1_A 74 LASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSD-GA--ISLLTYTGEGQWEVKKINNAHT 150 (316)
T ss_dssp EEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSS-SC--EEEEEECSSSCEEECCBTTSSS
T ss_pred EEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCC-CC--EEEEecCCCCCcceeeeecccc
Confidence 776778999999999874 4666654 45688888887 5554443332 22 4677777663221111011111
Q ss_pred Ccc---hhhhh----------------ccceeEEEecCCceeEEEcccc
Q 020740 281 KKV---DFIEQ----------------FNEKLLVKQENENLQILDVRIS 310 (322)
Q Consensus 281 k~i---qFiE~----------------f~EkLLIKQE~~~LqI~Dl~~~ 310 (322)
..+ .|-.. .+..|+.=-++..+++||+...
T Consensus 151 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~ 199 (316)
T 3bg1_A 151 IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED 199 (316)
T ss_dssp SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT
T ss_pred CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC
Confidence 111 11110 1234555668899999999754
No 137
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=87.58 E-value=5.2 Score=38.39 Aligned_cols=114 Identities=12% Similarity=0.035 Sum_probs=60.8
Q ss_pred chhhhhhccccceeeecccccEEEEecCCCCc--eEEEEeeecCCCeEEEEE--------eEecCCCceeeeeeeehhhh
Q 020740 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADE--VIRSLFYNKNNDSLITVS--------VYASDNFSSLRCRSTRIEYI 175 (322)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~~iC~lN~s~dE--vIrSiFyNk~NdSlItvS--------vy~sd~fS~LkCr~~~~e~i 175 (322)
+.++--..-|....+|..||+.+..|...+.. .+.++=|+.....+.+.| +-.+++ ..+ .+=+.
T Consensus 194 ~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D-~tI-----klWd~ 267 (356)
T 2w18_A 194 EALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPV-FQL-----IVINP 267 (356)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CC-EEE-----EEEET
T ss_pred ceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCC-cEE-----EEEEC
Confidence 34555567788999999999999988643222 344444566444333322 111222 111 11112
Q ss_pred HhCCCCCCCcceeecccCCC-C----eEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec
Q 020740 176 RRGKPDAGFALFESESLKWP-G----FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS 232 (322)
Q Consensus 176 ~~gk~~~g~~LFe~~~L~~P-g----FVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs 232 (322)
..|+ +.....+..| | |++.+.. |..++.-..|++.|+||+++=+++..+.
T Consensus 268 ~tgk------~l~v~~~~~p~Gh~~~~lsg~~s-g~~lASgS~DgTIkIWDl~tGk~l~tL~ 322 (356)
T 2w18_A 268 KTTL------SVGVMLYCLPPGQAGRFLEGDVK-DHCAAAILTSGTIAIWDLLLGQCTALLP 322 (356)
T ss_dssp TTTE------EEEEEEECCCTTCCCCEEEEEEE-TTEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred CCCE------EEEEEEeeccCCCcceeEccccC-CCEEEEEcCCCcEEEEECCCCcEEEEec
Confidence 2222 1111111112 1 4433322 5566666789999999999999999886
No 138
>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}
Probab=87.12 E-value=0.57 Score=40.49 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=50.7
Q ss_pred CcEEEEEeccccee-eEEEcCCEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchh
Q 020740 224 NYTMLYSISDKNVQ-EIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (322)
Q Consensus 224 nYs~LYsIsde~Vq-EIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqF 285 (322)
+-+++..++-+.+. ++++.+|.++.+-.+..+.+|..|.+|.+.+++.+|||.|. -+.+.|
T Consensus 95 ~~~lv~~vp~~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~v~~~~V~vD~NHPLA-Gk~L~F 156 (169)
T 4dt4_A 95 SPDLIQYFSRREFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLA-GQTVHF 156 (169)
T ss_dssp CGGGEEEEEGGGGTTTCCCCTTCEEEEECTTSCEEEEEEEEEETTEEEEECSCTTT-TCCEEE
T ss_pred ChHHEEEeCHHHCCCcCCCCCCcEEEEECCCCCEEEEEEEEEcCCEEEEeCCCccC-CCEEEE
Confidence 44577888888886 35788999988877778889999999999999999999998 666665
No 139
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=85.94 E-value=12 Score=38.13 Aligned_cols=188 Identities=13% Similarity=0.172 Sum_probs=112.8
Q ss_pred ceeEEeec--cchhhhhhccccceeeecccccEEEEecCCCCc-----eEEEEeeecCCCeEEEEEeEecCCCceeeeee
Q 020740 97 KIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADE-----VIRSLFYNKNNDSLITVSVYASDNFSSLRCRS 169 (322)
Q Consensus 97 ~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dE-----vIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~ 169 (322)
.|.-+-.+ ...++++...|.+..|++.+ .++.+- ++- -|+++=++.+.+.|.+.| ++ ..++-.
T Consensus 87 ~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~--~~~~~~~~sv~svafSPDG~~LAsgs----~D-GtVkIW- 156 (588)
T 2j04_A 87 YPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD--SKGNLSSRTYHCFEWNPIESSIVVGN----ED-GELQFF- 156 (588)
T ss_dssp CEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC--CSSCSTTTCEEEEEECSSSSCEEEEE----TT-SEEEEE-
T ss_pred cEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc--CCCccccccEEEEEEcCCCCEEEEEc----CC-CEEEEE-
Confidence 35544444 56799999999999999754 555543 332 599999999888777744 33 333333
Q ss_pred eehhhhHhCCCCCC-Ccceee------cccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEE---EE---ecccce
Q 020740 170 TRIEYIRRGKPDAG-FALFES------ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML---YS---ISDKNV 236 (322)
Q Consensus 170 ~~~e~i~~gk~~~g-~~LFe~------~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~L---Ys---Isde~V 236 (322)
++..|++.+. +-+..+ ..-.|=--+-|-+ +| ++..+.|+..|+||+.+-... -. .+...|
T Consensus 157 ----d~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSP-dg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V 229 (588)
T 2j04_A 157 ----SIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYE-DV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKI 229 (588)
T ss_dssp ----ECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEET-TE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCC
T ss_pred ----ECCCCccccccceeeeeeecccccccccEEEEEEcC-Cc--EEEEeCCCeEEEEECCCCccccceeeecccccCcE
Confidence 3333433111 111122 1123434445553 45 556677999999999887732 23 455679
Q ss_pred eeEEEcCCEEEEEEecCCCeeEEEEEEeecCcee-eeeeeccccCCcchh-hhhccceeEEEecCCceeEEEcc
Q 020740 237 QEIKISPGIMLLIFTKASGHVPLKILSIEDGTVL-KSFNHLLHRNKKVDF-IEQFNEKLLVKQENENLQILDVR 308 (322)
Q Consensus 237 qEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l-~~f~~~L~~sk~iqF-iE~f~EkLLIKQE~~~LqI~Dl~ 308 (322)
..+..+++ .|+..- . + .++|.++++++.. ..+.| ...-..|.| -+.-+..|.+==|++. ++|...
T Consensus 230 ~svaFsg~-~LASa~-~-~--tIkLWd~~~~~~~~~~~gh-~~~V~~va~~~s~d~~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 230 TDLKIVDY-KVVLTC-P-G--YVHKIDLKNYSISSLKTGS-LENFHIIPLNHEKESTILLMSNKTSY-KVLLED 296 (588)
T ss_dssp CCEEEETT-EEEEEC-S-S--EEEEEETTTTEEEEEECSC-CSCCCEEEETTCSSCEEEEECSSCEE-EEEESS
T ss_pred EEEEEECC-EEEEEe-C-C--eEEEEECCCCeEEEEEcCC-CceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec
Confidence 99999954 444443 2 2 7899999999884 33332 122223333 1233345777777777 888765
No 140
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=85.71 E-value=3.8 Score=38.73 Aligned_cols=132 Identities=13% Similarity=0.076 Sum_probs=76.4
Q ss_pred eeeeehhhhHhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccc-----eeeEEE
Q 020740 167 CRSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN-----VQEIKI 241 (322)
Q Consensus 167 Cr~~~~e~i~~gk~~~g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~-----VqEIkI 241 (322)
++.++++++..|+.... |--+.|- .+|+.+ |...++..++||+.+-+..-.+.... |..+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~-----------~~~~~~s-pdg~~~-~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~ 68 (723)
T 1xfd_A 2 KKKVTVEDLFSEDFKIH-----------DPEAKWI-SDTEFI-YREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEI 68 (723)
T ss_dssp CCCCCHHHHTCTTTCCC-----------CCCCCBS-SSSCBC-CCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEE
T ss_pred CccccHHHHhCCCCccc-----------ccccEEc-CCCcEE-EEeCCCCEEEEECCCCcEEEEeccccccccccceEEE
Confidence 45678888888775321 1112222 246654 44678999999999887665555443 889999
Q ss_pred c-CCEEEEEEecCCCe------eEEEEEEeecCceeeeeeeccccCCcchhhhhc--cceeEEEecCCceeEEEcccccc
Q 020740 242 S-PGIMLLIFTKASGH------VPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQF--NEKLLVKQENENLQILDVRISLF 312 (322)
Q Consensus 242 S-~Gimll~~q~~~~~------iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f--~EkLLIKQE~~~LqI~Dl~~~~~ 312 (322)
| ||-.|++....... --+.|.++++|+. ..+...-.....+..+.-. +.+|..--+ .+|.+||+.+.+.
T Consensus 69 SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~ 146 (723)
T 1xfd_A 69 SPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA 146 (723)
T ss_dssp CTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC
T ss_pred CCCCCEEEEEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce
Confidence 9 56665555433221 3577999999986 2222111111112222111 344544443 6899999887654
Q ss_pred e
Q 020740 313 L 313 (322)
Q Consensus 313 ~ 313 (322)
.
T Consensus 147 ~ 147 (723)
T 1xfd_A 147 I 147 (723)
T ss_dssp E
T ss_pred E
Confidence 3
No 141
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=85.42 E-value=16 Score=31.44 Aligned_cols=106 Identities=14% Similarity=0.239 Sum_probs=61.3
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccC-------cEEEEEec--ccceeeEEEcC-CEEEEEEecCCCeeEEEEEEeec-
Q 020740 198 VEFDDVNGKVLTYSAQDSIYKVFDLKN-------YTMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIED- 266 (322)
Q Consensus 198 VEFDdvNgkilty~aq~~~YrVfdlkn-------Ys~LYsIs--de~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIed- 266 (322)
+.|.. +|+.++-...|+..++||+.+ .+++..+. ...|..+.++| |-.|+.--.-+. ++|.++.+
T Consensus 64 v~~sp-~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~---v~iwd~~~~ 139 (330)
T 2hes_X 64 VAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKS---VWIWETDES 139 (330)
T ss_dssp EEECT-TSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSC---EEEEECCTT
T ss_pred EEECC-CCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCE---EEEEeccCC
Confidence 56665 456666667899999999953 34565554 45688888885 455444333222 46778743
Q ss_pred C---ceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEEcccc
Q 020740 267 G---TVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDVRIS 310 (322)
Q Consensus 267 G---~~l~~f~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~ 310 (322)
| +.+..+. .+...|.-+. .-+..|+.=-.+..++|||+.+.
T Consensus 140 ~~~~~~~~~~~---~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~ 185 (330)
T 2hes_X 140 GEEYECISVLQ---EHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD 185 (330)
T ss_dssp CCCCEEEEEEC---CCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT
T ss_pred CCCeEEEEEec---cCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 2 2333222 2233332222 12445666678999999998764
No 142
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=84.84 E-value=18 Score=31.17 Aligned_cols=146 Identities=7% Similarity=0.049 Sum_probs=88.6
Q ss_pred cccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCC-------CCCCcc
Q 020740 114 SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKP-------DAGFAL 186 (322)
Q Consensus 114 sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~-------~~g~~L 186 (322)
.|.-..+|..||+.+-.+......-.+.|-...+.+ |++ +-. .+ . +.+..+. .|+. ..+.+-
T Consensus 68 ~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~-l~v-~d~--~~-~--~v~~~~~----~g~~~~~~~~~~~~~~g 136 (329)
T 3fvz_A 68 EDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN-YWV-TDV--AL-H--QVFKLDP----HSKEGPLLILGRSMQPG 136 (329)
T ss_dssp SCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC-EEE-EET--TT-T--EEEEECT----TCSSCCSEEESBTTBCC
T ss_pred CCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC-EEE-EEC--CC-C--EEEEEeC----CCCeEEEEEecccCCCC
Confidence 456677777778776666555555677777776555 333 211 11 1 1122211 1110 000011
Q ss_pred eeecccCCCCeEEecCCCceEEEEec-CCCeEEEEeccCcEEEEEeccc------------ceeeEEEcC--CEEEEEEe
Q 020740 187 FESESLKWPGFVEFDDVNGKVLTYSA-QDSIYKVFDLKNYTMLYSISDK------------NVQEIKISP--GIMLLIFT 251 (322)
Q Consensus 187 Fe~~~L~~PgFVEFDdvNgkilty~a-q~~~YrVfdlknYs~LYsIsde------------~VqEIkIS~--Gimll~~q 251 (322)
.....+.+|--+-||..+|.+...+. .++..++|| .+-+.+..+... ....|-+++ |.++ +..
T Consensus 137 ~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~-v~d 214 (329)
T 3fvz_A 137 SDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLC-VAD 214 (329)
T ss_dssp CSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEE-EEE
T ss_pred CCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEE-EEE
Confidence 11456789999999998999999997 789999999 455666666421 266788875 5554 444
Q ss_pred cCCCeeEEEEEEeecCceeeeee
Q 020740 252 KASGHVPLKILSIEDGTVLKSFN 274 (322)
Q Consensus 252 ~~~~~iPlkIlsIedG~~l~~f~ 274 (322)
...+ -+.+++.+||+.+..+.
T Consensus 215 ~~~~--~I~~~~~~~G~~~~~~~ 235 (329)
T 3fvz_A 215 RENG--RIQCFKTDTKEFVREIK 235 (329)
T ss_dssp TTTT--EEEEEETTTCCEEEEEC
T ss_pred CCCC--EEEEEECCCCcEEEEEe
Confidence 4444 35788888999888764
No 143
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=84.83 E-value=0.97 Score=43.66 Aligned_cols=179 Identities=11% Similarity=0.107 Sum_probs=100.1
Q ss_pred hhhhhhccccceeeecccccEE-----------EEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhh
Q 020740 107 IVFALAQSGVCAAFCRETNQRI-----------CFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYI 175 (322)
Q Consensus 107 iI~aL~~sG~c~af~r~tn~~i-----------C~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i 175 (322)
+++.-..-|....||..+++.. ..+. .+...|.|+=++.. +.|++. ..|. .++.- ++
T Consensus 227 ~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~-~h~~~v~sv~~s~~-~~lasg---s~Dg----tV~lW---D~ 294 (524)
T 2j04_B 227 CLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS-LADSLITTFDFLSP-TTVVCG---FKNG----FVAEF---DL 294 (524)
T ss_dssp EEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC-CTTTCEEEEEESSS-SEEEEE---ETTS----EEEEE---ET
T ss_pred eEEEEecCCeEEEEEcCCCccccccceeecCceEEEE-cCCCCEEEEEecCC-CeEEEE---eCCC----EEEEE---EC
Confidence 6666777788888888766421 1222 23456777766642 333221 2232 22222 22
Q ss_pred HhCCCCCCCcceeecccCCCCeEE----ecCCCc-eEEEEecCCCeEEEEeccCcEEEEEec----ccceeeEEEcC-CE
Q 020740 176 RRGKPDAGFALFESESLKWPGFVE----FDDVNG-KVLTYSAQDSIYKVFDLKNYTMLYSIS----DKNVQEIKISP-GI 245 (322)
Q Consensus 176 ~~gk~~~g~~LFe~~~L~~PgFVE----FDdvNg-kilty~aq~~~YrVfdlknYs~LYsIs----de~VqEIkIS~-Gi 245 (322)
+.|+ .|+..- -.|.+.|- +-..+| .+++-...|++.|+||+++.+++..+. ..+|..+..+| |-
T Consensus 295 ~~~~----~~~~~~--~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~ 368 (524)
T 2j04_B 295 TDPE----VPSFYD--QVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIY 368 (524)
T ss_dssp TBCS----SCSEEE--ECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTT
T ss_pred CCCC----CceEEe--ecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcC
Confidence 2221 222110 11333332 123456 777777889999999999987544332 12477888998 54
Q ss_pred EEEEEecCCCeeEEEEEEeecCceeeeeeeccccCC---cchhhhhccceeEEEecCCceeEEEcccc
Q 020740 246 MLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK---KVDFIEQFNEKLLVKQENENLQILDVRIS 310 (322)
Q Consensus 246 mll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk---~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~ 310 (322)
.++.- ..... ++|.++.+|+.+..+.- | .. .|.| -.-+..|+.==+|..++|||+...
T Consensus 369 ~l~s~-~~d~t--v~lwd~~~~~~~~~l~g--H-~~~V~sva~-Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 369 SYIYS-DGASS--LRAVPSRAAFAVHPLVS--R-ETTITAIGV-SRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp EEEEE-CSSSE--EEEEETTCTTCCEEEEE--C-SSCEEEEEC-CSSCCBCEEEETTTEEECCBSCSS
T ss_pred eEEEe-CCCCc--EEEEECcccccceeeec--C-CCceEEEEe-CCCCCeEEEEECCCEEEEEechHh
Confidence 43332 22333 68999999988765531 1 22 2333 223556777778999999998654
No 144
>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*
Probab=84.25 E-value=0.96 Score=38.35 Aligned_cols=61 Identities=23% Similarity=0.387 Sum_probs=50.5
Q ss_pred CcEEEEEecccceee-EEEcCCEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchh
Q 020740 224 NYTMLYSISDKNVQE-IKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (322)
Q Consensus 224 nYs~LYsIsde~VqE-IkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqF 285 (322)
+-++++.++-+.+.+ ..+.+|.++.+-.+....+|.+|..+.+.+.+.++||.|. -+.+.|
T Consensus 67 ~~~lv~~v~~~~f~~~~~~~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLA-Gk~L~F 128 (158)
T 3cgm_A 67 DPEGVQVVPLSAFPEDAEVVPGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHPLA-GKDLDF 128 (158)
T ss_dssp CGGGEEEEEGGGSCTTSCCCTTCEEEEEETTTEEEEEEEEEEETTEEEEECSCTTT-TCCEEE
T ss_pred CcceEEEEEHHHCCCCCCCccCCEEEEECCCCCEEEEEEEEECCCEEEEeCCcccc-CCEEEE
Confidence 445788888888875 5788999987777777889999999999999999999987 666665
No 145
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=83.10 E-value=16 Score=28.96 Aligned_cols=189 Identities=6% Similarity=-0.011 Sum_probs=96.1
Q ss_pred ccccceeeeccc-ccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceeecc
Q 020740 113 QSGVCAAFCRET-NQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESES 191 (322)
Q Consensus 113 ~sG~c~af~r~t-n~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~~~ 191 (322)
..|.-.++|..+ ++............|.++-++.+...|++++.. .+ ...+...++.. .++ ...+.....
T Consensus 60 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-~~--~~~~l~~~~~~---~~~---~~~~~~~~~ 130 (297)
T 2ojh_A 60 SEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKV-EF--GKSAIYLLPST---GGT---PRLMTKNLP 130 (297)
T ss_dssp ETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECT-TT--SSCEEEEEETT---CCC---CEECCSSSS
T ss_pred cCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeC-CC--CcceEEEEECC---CCc---eEEeecCCC
Confidence 456677888888 777766655555778888888877766664421 12 12333333221 111 111111111
Q ss_pred cCCCCeEEecCCCceEEEEecCCCeEEEEeccCc-EEEEEec--ccceeeEEEc-CCEEEEEEecCCCeeEEEEEEeecC
Q 020740 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNY-TMLYSIS--DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDG 267 (322)
Q Consensus 192 L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknY-s~LYsIs--de~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG 267 (322)
+-.+.|...+..++.....++.+++|++..- ..+..+. ...+..+.++ +|-.|++.....+.+-+-.+++.++
T Consensus 131 ---~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~ 207 (297)
T 2ojh_A 131 ---SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGS 207 (297)
T ss_dssp ---EEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSS
T ss_pred ---ccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCC
Confidence 2334566544444434556888999996422 2233333 2457788887 4544444443344443334443333
Q ss_pred ceeeeeeeccccCCcchhhhhccceeEEEecC-----------CceeEEEcccccceee
Q 020740 268 TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEN-----------ENLQILDVRISLFLPL 315 (322)
Q Consensus 268 ~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~-----------~~LqI~Dl~~~~~~~~ 315 (322)
.+..+...-..-..+.| -.-+.+|++--.+ ..|.+||+.+.+...+
T Consensus 208 -~~~~~~~~~~~~~~~~~-s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~ 264 (297)
T 2ojh_A 208 -SVERITDSAYGDWFPHP-SPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETL 264 (297)
T ss_dssp -CEEECCCCSEEEEEEEE-CTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEE
T ss_pred -CcEEEecCCcccCCeEE-CCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceee
Confidence 33333210000111222 1235566655433 5699999988766443
No 146
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=82.67 E-value=28 Score=31.53 Aligned_cols=186 Identities=12% Similarity=0.288 Sum_probs=108.4
Q ss_pred ccceeEEeec--cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020740 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (322)
Q Consensus 95 RS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~ 172 (322)
...|..+... ...++.-...|....||. +++.+..+.. +..-|+++-+..+...|++.| .|. .++.-..
T Consensus 344 ~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~-~~~~v~~~~~s~dg~~l~~~~---~d~--~v~~~~~-- 414 (577)
T 2ymu_A 344 SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVRGVAFSPDGQTIASAS---DDK--TVKLWNR-- 414 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEEC-CSSCEEEEEECTTSSCEEEEE---TTS--EEEEECT--
T ss_pred CCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecC-CCCCeEEEEECCCCCEEEEEe---CCC--EEEEEeC--
Confidence 3445555444 336666677888889985 6888887765 445678899988888777644 222 2222211
Q ss_pred hhhHhCCCCCCCcceeecccCCCCe---EEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcC-CEE
Q 020740 173 EYIRRGKPDAGFALFESESLKWPGF---VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISP-GIM 246 (322)
Q Consensus 173 e~i~~gk~~~g~~LFe~~~L~~PgF---VEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~-Gim 246 (322)
.|+ +..+ ...|++- +.|.. +++.++....|+..++||+.. .++..+. ...|..+.++| |-+
T Consensus 415 ----~~~------~~~~-~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~~~-~~~~~~~~~~~~v~~~~~spd~~~ 481 (577)
T 2ymu_A 415 ----NGQ------LLQT-LTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVRGVAFSPDGQT 481 (577)
T ss_dssp ----TCC------EEEE-EECCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTS-CEEEEEECCSSCEEEEEECTTSCE
T ss_pred ----CCC------EEEE-ecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEECCC-CEEEEEcCCCCCEEEEEEcCCCCE
Confidence 111 1111 1122332 45654 456666667899999999754 4444443 45677888884 444
Q ss_pred EEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEEccc
Q 020740 247 LLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDVRI 309 (322)
Q Consensus 247 ll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~ 309 (322)
|+.--. ... ++|.+ .+|+.+..+.- | ..+|.=+. .-+.+|..==++..+++||+..
T Consensus 482 las~~~-d~~--i~iw~-~~~~~~~~~~~--h-~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~ 539 (577)
T 2ymu_A 482 IASASD-DKT--VKLWN-RNGQLLQTLTG--H-SSSVRGVAFSPDGQTIASASDDKTVKLWNRNG 539 (577)
T ss_dssp EEEEET-TSE--EEEEE-TTSCEEEEEEC--C-SSCEEEEEECTTSSCEEEEETTSEEEEECTTS
T ss_pred EEEEeC-CCE--EEEEc-CCCCEEEEEeC--C-CCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC
Confidence 443322 222 56777 57888877652 2 33332221 1245566666889999999644
No 147
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=80.67 E-value=15 Score=32.04 Aligned_cols=119 Identities=13% Similarity=0.029 Sum_probs=69.6
Q ss_pred ccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceeecccCC
Q 020740 115 GVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKW 194 (322)
Q Consensus 115 G~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~~~L~~ 194 (322)
+.-..+|..|++..-.+......-.+.|-++..++.|.+++ . ....+ +...|++. ..+... ....+
T Consensus 203 ~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~-----~----~v~~~---d~~t~~~~-~~~~~~-~~~~~ 268 (328)
T 3dsm_A 203 PSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN-----N----DIWRM---PVEADRVP-VRPFLE-FRDTK 268 (328)
T ss_dssp CEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES-----S----SEEEE---ETTCSSCC-SSCSBC-CCSSC
T ss_pred ceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc-----c----EEEEE---ECCCCcee-eeeeec-CCCCc
Confidence 34556666666655555543333455666666555554421 1 22222 33344442 122222 12578
Q ss_pred CCeEEecCCCceEEEEe----cCCCeEEEEeccCcEEEEEecccceeeEEEcCCEEEEEEecCC
Q 020740 195 PGFVEFDDVNGKVLTYS----AQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKAS 254 (322)
Q Consensus 195 PgFVEFDdvNgkilty~----aq~~~YrVfdlknYs~LYsIsde~VqEIkIS~Gimll~~q~~~ 254 (322)
|.-+.+|+.+|++...+ ...+...|||.. -+++-+|. +-..|+.+..-.+-.|
T Consensus 269 p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~------~G~~P~~~~~~~~~~~ 325 (328)
T 3dsm_A 269 YYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY------VGIIPGAFCWKLEHHH 325 (328)
T ss_dssp EEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE------EEESEEEEEEECCCCC
T ss_pred eEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE------eccCcceEEEeccccc
Confidence 99999999999999988 678888899987 66666553 4455777765554433
No 148
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=77.24 E-value=42 Score=34.28 Aligned_cols=180 Identities=11% Similarity=0.087 Sum_probs=109.6
Q ss_pred ccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceeecccCC
Q 020740 115 GVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKW 194 (322)
Q Consensus 115 G~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~~~L~~ 194 (322)
|....++-++++..-.+|..+++-|.++=++.+...|.+.|. |. .|+.-..+-+.. .++...++-+ ..
T Consensus 64 g~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~---dg----~V~iwd~~~~l~-~l~~~~~~~~-~s--- 131 (588)
T 2j04_A 64 EFENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSN---NG----NVSVFKDNKMLT-NLDSKGNLSS-RT--- 131 (588)
T ss_dssp CCCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEET---TS----CEEEEETTEEEE-ECCCSSCSTT-TC---
T ss_pred CCcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeC---CC----cEEEEeCCceee-eccCCCcccc-cc---
Confidence 355566677777666778677888999999988777776551 11 222222100000 0000000000 00
Q ss_pred CCeEEecCCCceEEEEecCCCeEEEEeccCcE-------EEEEec------ccceeeEEEcCCEEEEEEecCCCeeEEEE
Q 020740 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT-------MLYSIS------DKNVQEIKISPGIMLLIFTKASGHVPLKI 261 (322)
Q Consensus 195 PgFVEFDdvNgkilty~aq~~~YrVfdlknYs-------~LYsIs------de~VqEIkIS~Gimll~~q~~~~~iPlkI 261 (322)
--.+.|-. +|+.|+--.+||+.++||+++=. .+-.+. ...|..+..||+- ++.... .+ .+++
T Consensus 132 v~svafSP-DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~-D~--tVrl 206 (588)
T 2j04_A 132 YHCFEWNP-IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALS-NN--SVFS 206 (588)
T ss_dssp EEEEEECS-SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEET-TC--CEEE
T ss_pred EEEEEEcC-CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeC-CC--eEEE
Confidence 11567744 78888888899999999999743 245552 2478888899776 444333 33 3578
Q ss_pred EEeecCcee---eeeeeccc--cCCcchhhhhccceeEEEecCCceeEEEcccccceeee
Q 020740 262 LSIEDGTVL---KSFNHLLH--RNKKVDFIEQFNEKLLVKQENENLQILDVRISLFLPLQ 316 (322)
Q Consensus 262 lsIedG~~l---~~f~~~L~--~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~~~~ 316 (322)
.++.+++.. ..+.. .| .-..+.|. +.+|.+=- ++.+++||+.+.++..+.
T Consensus 207 Wd~~~~~~~~~~~tL~~-~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~ 261 (588)
T 2j04_A 207 MTVSASSHQPVSRMIQN-ASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLK 261 (588)
T ss_dssp ECCCSSSSCCCEEEEEC-CCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEE
T ss_pred EECCCCccccceeeecc-cccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEE
Confidence 999988842 23321 23 25667787 56777765 689999999988774443
No 149
>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}
Probab=76.86 E-value=1 Score=39.73 Aligned_cols=60 Identities=22% Similarity=0.381 Sum_probs=47.2
Q ss_pred CcEEEEEecccceee-EEEcCCEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchh
Q 020740 224 NYTMLYSISDKNVQE-IKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (322)
Q Consensus 224 nYs~LYsIsde~VqE-IkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqF 285 (322)
+-++++.++-+.+.+ +.+.+|.++.+..+.. .+|.+|.+|.+.+++.+|||.|. -+.+.|
T Consensus 72 ~~~lV~~vp~~~f~~~~~~~~G~~~~~~~~~G-~~~~~V~~v~~~~V~vD~NHPLA-Gk~L~F 132 (196)
T 2kfw_A 72 DENLVQRVPKDVFMGVDELQVGMRFLAETDQG-PVPVEITAVEDDHVVVDGNHMLA-GQNLKF 132 (196)
T ss_dssp CTTTCEEECGGGCCCSSCCCTTCEEEEEETTE-EEEEEBCCCCSSSEEECCCCTTS-CCCCEE
T ss_pred ChhhEEEEEHHHCCCccCcccCCEEEEECCCC-cEEEEEEEEcCCEEEEeCCCCCC-CCeEEE
Confidence 344677777777765 4688999977655554 89999999999999999999987 666665
No 150
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=76.45 E-value=34 Score=30.88 Aligned_cols=114 Identities=12% Similarity=0.148 Sum_probs=66.9
Q ss_pred eEEecCCCceEEEEecCCC---eEEEEeccCcEEEEEe-cccceeeEEEc-CCEEEEEEecCCCeeEEEEEEeecCceee
Q 020740 197 FVEFDDVNGKVLTYSAQDS---IYKVFDLKNYTMLYSI-SDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (322)
Q Consensus 197 FVEFDdvNgkilty~aq~~---~YrVfdlknYs~LYsI-sde~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~l~ 271 (322)
.+.|.. +|+-++|...++ ..++||+++-+..--. ....+..+.+| +|-.|++........-+.++++.+|+...
T Consensus 183 ~~~~Sp-dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~ 261 (415)
T 2hqs_A 183 SPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ 261 (415)
T ss_dssp EEEECT-TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE
T ss_pred eeEEcC-CCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEe
Confidence 344544 566677766654 8999999987654222 23467888998 46555544444445568889999998643
Q ss_pred eeeeccccCCcchhhhhccceeEEEec-CC--ceeEEEcccccce
Q 020740 272 SFNHLLHRNKKVDFIEQFNEKLLVKQE-NE--NLQILDVRISLFL 313 (322)
Q Consensus 272 ~f~~~L~~sk~iqFiE~f~EkLLIKQE-~~--~LqI~Dl~~~~~~ 313 (322)
-..+. ..-..+.|- .=+.+|+.--. +. .|.+||+.+.+..
T Consensus 262 l~~~~-~~~~~~~~s-pdg~~l~~~s~~~g~~~i~~~d~~~~~~~ 304 (415)
T 2hqs_A 262 VTDGR-SNNTEPTWF-PDSQNLAFTSDQAGRPQVYKVNINGGAPQ 304 (415)
T ss_dssp CCCCS-SCEEEEEEC-TTSSEEEEEECTTSSCEEEEEETTSSCCE
T ss_pred CcCCC-CcccceEEC-CCCCEEEEEECCCCCcEEEEEECCCCCEE
Confidence 21111 111123331 22556777664 34 5666688776643
No 151
>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}
Probab=75.95 E-value=1.7 Score=37.39 Aligned_cols=60 Identities=22% Similarity=0.378 Sum_probs=47.4
Q ss_pred CcEEEEEecccceee-EEEcCCEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchh
Q 020740 224 NYTMLYSISDKNVQE-IKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (322)
Q Consensus 224 nYs~LYsIsde~VqE-IkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqF 285 (322)
+-+++..++-+.+.+ ..+.+|.++.+..+... +|..|.+|.+.+++.+|||.|. -+.+.|
T Consensus 72 ~~~~v~~v~~~~f~~~~~~~~G~~~~~~~~~G~-~~~~V~~v~~~~V~vD~NHPLA-Gk~L~F 132 (171)
T 2k8i_A 72 DENLVQRVPKDVFMGVDELQVGMRFLAETDQGP-VPVEITAVEDDHVVVDGNHMLA-GQNLKF 132 (171)
T ss_dssp CTTSEEEEEGGGGTTSSCCCTTCEEEEEETTEE-EEEEEEEECSSEEEEESCCSSC-CCEEEE
T ss_pred ChhhEEEeeHHHCCcccCccCCcEEEEECCCCc-EEEEEEEEcCCEEEEeCCCCCC-CCeEEE
Confidence 334677777777765 46789999887776665 8999999999999999999987 666665
No 152
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=75.78 E-value=16 Score=35.16 Aligned_cols=136 Identities=15% Similarity=0.026 Sum_probs=75.1
Q ss_pred cceeEEeec-cchhhhhhccccceeeecccccEEEEecCCCCceEEEE--eeecCC-CeEEEEEeEecCCCceeeeeeee
Q 020740 96 SKIIEIVAA-RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSL--FYNKNN-DSLITVSVYASDNFSSLRCRSTR 171 (322)
Q Consensus 96 S~V~EIv~a-~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSi--FyNk~N-dSlItvSvy~sd~fS~LkCr~~~ 171 (322)
..|.-+-.. .+.|++=...|.+..||..+++.....-..+..-|.+| +++.+. ..|++.| .|. ++ +.-
T Consensus 267 ~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S---~D~--tv--klW- 338 (524)
T 2j04_B 267 SLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVA---VDG--YF--YIF- 338 (524)
T ss_dssp TCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEE---TTS--EE--EEE-
T ss_pred CCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEec---cCC--eE--EEE-
Confidence 445554433 34566666779999999988753333334567789999 566543 3344433 233 22 222
Q ss_pred hhhhHhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec--ccceeeEEEcCC
Q 020740 172 IEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS--DKNVQEIKISPG 244 (322)
Q Consensus 172 ~e~i~~gk~~~g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs--de~VqEIkIS~G 244 (322)
+++.++.- ..+-......+.--+.|.. +++.++....+++.|+||+++..++..+. ...|..+.+||.
T Consensus 339 --D~~~~~~~--~~~~~~~~~~~v~~v~fsp-~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~ 408 (524)
T 2j04_B 339 --NPKDIATT--KTTVSRFRGSNLVPVVYCP-QIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRL 408 (524)
T ss_dssp --CGGGHHHH--CEEEEECSCCSCCCEEEET-TTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSS
T ss_pred --ECCCCCcc--cccccccccCcccceEeCC-CcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCC
Confidence 23222210 0010000000111266765 45566667788899999999987655543 346777777754
No 153
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=75.47 E-value=49 Score=30.31 Aligned_cols=124 Identities=14% Similarity=0.129 Sum_probs=69.9
Q ss_pred eeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc-cceeeEEEcC-CEEEEEEecCCCeeEEEEEEe
Q 020740 187 FESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KNVQEIKISP-GIMLLIFTKASGHVPLKILSI 264 (322)
Q Consensus 187 Fe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsd-e~VqEIkIS~-Gimll~~q~~~~~iPlkIlsI 264 (322)
+....+.+|-++-|| .+|++...+..++..++||+.+-....-+.. +.-. +-+++ |-.|+......++ -+..++.
T Consensus 125 ~~~a~~~~P~~la~d-~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~-~I~~~d~ 201 (409)
T 3hrp_A 125 LASAKFKYMWGIAAV-GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTH-TVYVYMK 201 (409)
T ss_dssp TTTCCCCCEEEEEEC-STTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTC-EEEEEEG
T ss_pred HHHcccCCceEEEEe-CCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCc-eEEEEEc
Confidence 444578999999999 5788998888889999999987554333332 2222 44442 2233333332221 3455565
Q ss_pred ecCceeeeeeeccc-cCCcchhhh--hccceeEEEecCCceeEEEcccccce
Q 020740 265 EDGTVLKSFNHLLH-RNKKVDFIE--QFNEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 265 edG~~l~~f~~~L~-~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
.++.....+....+ ....+.-+- .-+..|++-..+..+..||+.+.++.
T Consensus 202 ~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~ 253 (409)
T 3hrp_A 202 ASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT 253 (409)
T ss_dssp GGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE
T ss_pred CCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE
Confidence 55554333311101 111111121 12567888666667999998766543
No 154
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=74.74 E-value=31 Score=29.83 Aligned_cols=151 Identities=13% Similarity=0.186 Sum_probs=84.2
Q ss_pred chhhhhhc-cccceeeecccccEEEEecCCCC-----ceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCC
Q 020740 106 DIVFALAQ-SGVCAAFCRETNQRICFLNVTAD-----EVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGK 179 (322)
Q Consensus 106 diI~aL~~-sG~c~af~r~tn~~iC~lN~s~d-----EvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk 179 (322)
.++++-.. .+...+||+ +|+.+-.+..... .-.+.+-...+.+ +++ +. +++ ..+.|-.. . ||
T Consensus 89 ~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~-~lv-~~--~~~-~~v~~~d~-----~-G~ 156 (276)
T 3no2_A 89 NALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGN-YLV-PL--FAT-SEVREIAP-----N-GQ 156 (276)
T ss_dssp CEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSC-EEE-EE--TTT-TEEEEECT-----T-SC
T ss_pred CEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCC-EEE-Ee--cCC-CEEEEECC-----C-CC
Confidence 34444443 566677776 6777766553211 1233333444333 332 22 122 33433322 1 43
Q ss_pred CCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeE---------EEcCCEEEEEE
Q 020740 180 PDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEI---------KISPGIMLLIF 250 (322)
Q Consensus 180 ~~~g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~VqEI---------kIS~Gimll~~ 250 (322)
.+.+-..-.+|--+.++ .||.++..+..++....||..+-+.+.++...++... .+.+|.+++.-
T Consensus 157 -----~~w~~~~~~~~~~~~~~-~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 157 -----LLNSVKLSGTPFSSAFL-DNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICN 230 (276)
T ss_dssp -----EEEEEECSSCCCEEEEC-TTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEE
T ss_pred -----EEEEEECCCCccceeEc-CCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEe
Confidence 35554444577777774 5788888888888899999999999999975543321 13466665554
Q ss_pred ecCCCe-----eEEEEEEe-ecCceeeeee
Q 020740 251 TKASGH-----VPLKILSI-EDGTVLKSFN 274 (322)
Q Consensus 251 q~~~~~-----iPlkIlsI-edG~~l~~f~ 274 (322)
-..|.. =...++.| .+|+.+-++.
T Consensus 231 ~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~ 260 (276)
T 3no2_A 231 WQGHDREAGKGKHPQLVEIDSEGKVVWQLN 260 (276)
T ss_dssp ECTTCTTGGGSCCCSEEEECTTSBEEEEEC
T ss_pred ccCccccccccCCceEEEECCCCCEEEEec
Confidence 322210 12356666 6888877664
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=73.45 E-value=41 Score=28.40 Aligned_cols=175 Identities=10% Similarity=0.109 Sum_probs=93.7
Q ss_pred hhhhhhccccceeeecc-cccEEE--EecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCC
Q 020740 107 IVFALAQSGVCAAFCRE-TNQRIC--FLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG 183 (322)
Q Consensus 107 iI~aL~~sG~c~af~r~-tn~~iC--~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g 183 (322)
++++-...+...+|+.. +|+... .+...+..-.+.+-+..+...+++++ . .+ ..+....... ..|++..
T Consensus 154 l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~-~-~~--~~v~v~~~~~---~~g~~~~- 225 (347)
T 3hfq_A 154 LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAG-E-LS--SQIASLKYDT---QTGAFTQ- 225 (347)
T ss_dssp EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEE-T-TT--TEEEEEEEET---TTTEEEE-
T ss_pred EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEe-C-CC--CEEEEEEecC---CCCceEE-
Confidence 44443445666778776 555432 23444444567777777665555432 1 11 1222222211 0011000
Q ss_pred Ccceeecc-----cCCCCeEEecCCCceEEEEecCCCeEEEEecc---CcEEEEEecc--cceeeEEEc-CCEEEEEEec
Q 020740 184 FALFESES-----LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK---NYTMLYSISD--KNVQEIKIS-PGIMLLIFTK 252 (322)
Q Consensus 184 ~~LFe~~~-----L~~PgFVEFDdvNgkilty~aq~~~YrVfdlk---nYs~LYsIsd--e~VqEIkIS-~Gimll~~q~ 252 (322)
...+.... ..+|.-+.|+.-...+.+.+..++...|||+. ..+.+..++. ..+..+.+| +|-.|++...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 305 (347)
T 3hfq_A 226 LGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQ 305 (347)
T ss_dssp EEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEET
T ss_pred eeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEc
Confidence 00000111 13455688887554565667778999999997 5667777664 467889998 4666677776
Q ss_pred CCCeeEEEEEEeecCceeeeee-eccccCCcchhhhhc
Q 020740 253 ASGHVPLKILSIEDGTVLKSFN-HLLHRNKKVDFIEQF 289 (322)
Q Consensus 253 ~~~~iPlkIlsIedG~~l~~f~-~~L~~sk~iqFiE~f 289 (322)
..+.+-+--++.+||+...--. ..++.--.+-|+|..
T Consensus 306 ~~~~v~v~~~d~~tg~l~~~~~~~~~p~p~~~~~~~~~ 343 (347)
T 3hfq_A 306 NTDNATLYARDLTSGKLSLLQKDVTVPEGVCVRFLEHH 343 (347)
T ss_dssp TTTEEEEEEECTTTCCEEEEEEEEECTTEEEEEECC--
T ss_pred CCCcEEEEEEeCCCCeEEecccceecCCCcEEEehhhc
Confidence 6666554444777888764221 234555555566544
No 156
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=73.39 E-value=37 Score=27.88 Aligned_cols=176 Identities=14% Similarity=0.191 Sum_probs=103.3
Q ss_pred cccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceee-ccc
Q 020740 114 SGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFES-ESL 192 (322)
Q Consensus 114 sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~-~~L 192 (322)
.+.-..|| .+++.+-.+......-+++|....+++ +++ +.. .+ ..+..-.. .|+. ...|.. ..+
T Consensus 99 ~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v-~~~--~~-~~i~~~~~------~g~~---~~~~~~~~~~ 163 (286)
T 1q7f_A 99 THQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGR-IIV-VEC--KV-MRVIIFDQ------NGNV---LHKFGCSKHL 163 (286)
T ss_dssp GCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSC-EEE-EET--TT-TEEEEECT------TSCE---EEEEECTTTC
T ss_pred CCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCC-EEE-EEC--CC-CEEEEEcC------CCCE---EEEeCCCCcc
Confidence 56677888 467777666655556778888887654 433 211 11 12222111 1211 011111 346
Q ss_pred CCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc----cceeeEEEc-CCEEEEEEecCCCeeEEEEEEeecC
Q 020740 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD----KNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDG 267 (322)
Q Consensus 193 ~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsd----e~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG 267 (322)
.+|--+.||. +|++...+..++..++||..+ ..+..+.. .....|.++ +|-+++.-...+.. +.+++ .+|
T Consensus 164 ~~p~~i~~~~-~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~--i~~~~-~~g 238 (286)
T 1q7f_A 164 EFPNGVVVND-KQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN--LTIFT-QDG 238 (286)
T ss_dssp SSEEEEEECS-SSEEEEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE--EEEEC-TTS
T ss_pred CCcEEEEECC-CCCEEEEECCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEE--EEEEC-CCC
Confidence 6788899987 678888888889999999854 45666643 356778886 46554433322213 46677 478
Q ss_pred ceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEEccc
Q 020740 268 TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRI 309 (322)
Q Consensus 268 ~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~ 309 (322)
+.+..+....+...+..+.---..+|+|=-.+..+++|++..
T Consensus 239 ~~~~~~~~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 239 QLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp CEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred CEEEEEcccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence 877776532222222121111145788877788999999754
No 157
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=71.58 E-value=58 Score=29.40 Aligned_cols=189 Identities=12% Similarity=0.203 Sum_probs=100.3
Q ss_pred ccceeEEeec--cchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020740 95 RSKIIEIVAA--RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (322)
Q Consensus 95 RS~V~EIv~a--~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~ 172 (322)
..+|.-+-+. ..+++.-...|...+||. +++.+..+.. +..-|+++-++.+...|+++| .|. .++......
T Consensus 57 ~~~V~~l~fspdg~~las~~~d~~i~vWd~-~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~---~d~--~~~~~~~~~ 129 (577)
T 2ymu_A 57 SSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG-HSSSVRGVAFSPDGQTIASAS---DDK--TVKLWNRNG 129 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECC-CSSCEEEEEECTTSSEEEEEE---TTS--CEEEEETTC
T ss_pred CCCEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEEC-CCCCEEEEEECCCCCEEEEEc---CCC--ceeeccccc
Confidence 4456655554 335666667788999995 7888888875 455688899998877777644 222 122111100
Q ss_pred hhhHhCCCCCCCcceeecccCCCC---eEEecCCCceEEEEecCCCeEEEEeccCcEEE-EEecccceeeEEEcC-CEEE
Q 020740 173 EYIRRGKPDAGFALFESESLKWPG---FVEFDDVNGKVLTYSAQDSIYKVFDLKNYTML-YSISDKNVQEIKISP-GIML 247 (322)
Q Consensus 173 e~i~~gk~~~g~~LFe~~~L~~Pg---FVEFDdvNgkilty~aq~~~YrVfdlknYs~L-YsIsde~VqEIkIS~-Giml 247 (322)
...... ..+++ -+.|. .+++.++....++..++|+....... ..-....+..+..+| |-.+
T Consensus 130 -----------~~~~~~--~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 195 (577)
T 2ymu_A 130 -----------QLLQTL--TGHSSSVWGVAFS-PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTI 195 (577)
T ss_dssp -----------CEEEEE--CCCSSCEEEEEEC-TTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCE
T ss_pred -----------ceeeec--cCCCCceeeeeee-cCCccceecccccceeccccceeeeeeccCCCcceeeeeecCCCCEE
Confidence 000000 01111 12232 34556666778889999997765532 223334455555553 2222
Q ss_pred EEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhh--ccceeEEEecCCceeEEEccccc
Q 020740 248 LIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQ--FNEKLLVKQENENLQILDVRISL 311 (322)
Q Consensus 248 l~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~--f~EkLLIKQE~~~LqI~Dl~~~~ 311 (322)
+.-- .... +++.+ .+|+.+..+. .+...+.-+.. =+..|+.--++..+++||.....
T Consensus 196 ~~~~-~d~~--v~~w~-~~~~~~~~~~---~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~ 254 (577)
T 2ymu_A 196 ASAS-DDKT--VKLWN-RNGQLLQTLT---GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL 254 (577)
T ss_dssp EEEE-TTSE--EEEEC-TTSCEEEEEE---CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE
T ss_pred EEEc-CCCE--EEEEe-CCCcEEEEEe---cCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCE
Confidence 2221 1222 34555 3566555443 12333322221 13456666788899999975443
No 158
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=70.81 E-value=19 Score=30.47 Aligned_cols=95 Identities=9% Similarity=0.096 Sum_probs=61.6
Q ss_pred eeehhhhHhCCCCCCCcceeecccCCCCeEEecC-CCceEEEEecCCCe------EEEEeccCcEEEEEecccceeeEEE
Q 020740 169 STRIEYIRRGKPDAGFALFESESLKWPGFVEFDD-VNGKVLTYSAQDSI------YKVFDLKNYTMLYSISDKNVQEIKI 241 (322)
Q Consensus 169 ~~~~e~i~~gk~~~g~~LFe~~~L~~PgFVEFDd-vNgkilty~aq~~~------YrVfdlknYs~LYsIsde~VqEIkI 241 (322)
.+++++|.+ ++ +.+.....|++.=|. .+-+|+++++.++. -.||+.+....+|.|.=++=.+|++
T Consensus 18 ~~~I~el~~-~~-------~~~~~~~~G~~~~~~~~~~~V~s~d~~~gk~~~~~v~~v~~~~~~~~~~~I~t~~G~~I~~ 89 (185)
T 2lcj_A 18 KITLRELYE-LF-------EDERYENMVYVRKKPKREIKVYSIDLETGKVVLTDIEDVIKAPATDHLIRFELEDGRSFET 89 (185)
T ss_dssp EEEHHHHGG-GB-------CCEEEETTEEEECSBSSCEEEEEEETTTTEEEEEEEEEEEEEECCSCEEEEEETTSCEEEE
T ss_pred EEEHHHHHH-hh-------hcccccccCeEEeccCCCcEEEEEECCCCcEEEEEeeeEEEcCCCceEEEEEECCCCEEEE
Confidence 357888873 32 222223345433222 24478888876664 3789988777899998888889999
Q ss_pred cCCEEEEEEecCCCeeEEEEEEeecCceeee
Q 020740 242 SPGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (322)
Q Consensus 242 S~Gimll~~q~~~~~iPlkIlsIedG~~l~~ 272 (322)
+|.|-+++... ........-.+.-|..+.-
T Consensus 90 T~~H~~~v~~~-g~~~~~~A~eLk~GD~v~v 119 (185)
T 2lcj_A 90 TVDHPVLVYEN-GRFIEKRAFEVKEGDKVLV 119 (185)
T ss_dssp CSSSEEEEEET-TEEEEEEGGGCCTTCEEEE
T ss_pred CCCCEEEEecC-CeEEEEEHHHCCCCCEEEE
Confidence 99999888874 3344555555556666653
No 159
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=70.31 E-value=50 Score=28.11 Aligned_cols=121 Identities=16% Similarity=0.207 Sum_probs=71.5
Q ss_pred CCCCeEEecCCCceEEEEecCCCeEEEEeccCcE--EEEEecc-----cceeeEEEc-CCEEEEEEecC-CCeeEEEEEE
Q 020740 193 KWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYT--MLYSISD-----KNVQEIKIS-PGIMLLIFTKA-SGHVPLKILS 263 (322)
Q Consensus 193 ~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs--~LYsIsd-----e~VqEIkIS-~Gimll~~q~~-~~~iPlkIls 263 (322)
..|--+.|+.-...+.+.+..++...|||+.+-+ .+..++. .....|.+| +|-.|++.... ++. +.|++
T Consensus 211 ~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~--i~v~~ 288 (361)
T 3scy_A 211 SGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADG--VAIFK 288 (361)
T ss_dssp CCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCE--EEEEE
T ss_pred CCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCE--EEEEE
Confidence 4566788987555566666678999999998654 3444442 224588898 56666665555 555 46666
Q ss_pred e--ecCceeeeeeeccc-cCCcchhhhhccceeEEEe-cCCceeEE--Ecccccceeee
Q 020740 264 I--EDGTVLKSFNHLLH-RNKKVDFIEQFNEKLLVKQ-ENENLQIL--DVRISLFLPLQ 316 (322)
Q Consensus 264 I--edG~~l~~f~~~L~-~sk~iqFiE~f~EkLLIKQ-E~~~LqI~--Dl~~~~~~~~~ 316 (322)
+ .+|+...-...... .-..+.| -.=+.+|++=- .+..+.+| |..+.+++..+
T Consensus 289 ~~~~~g~~~~~~~~~~g~~~~~~~~-spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 289 VDETNGTLTKVGYQLTGIHPRNFII-TPNGKYLLVACRDTNVIQIFERDQATGLLTDIK 346 (361)
T ss_dssp ECTTTCCEEEEEEEECSSCCCEEEE-CTTSCEEEEEETTTTEEEEEEECTTTCCEEECS
T ss_pred EcCCCCcEEEeeEecCCCCCceEEE-CCCCCEEEEEECCCCCEEEEEEECCCCcEeecc
Confidence 6 47773322111110 1112222 12355687765 77889995 65566666543
No 160
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=68.84 E-value=91 Score=30.55 Aligned_cols=183 Identities=13% Similarity=0.094 Sum_probs=107.3
Q ss_pred chhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCc
Q 020740 106 DIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFA 185 (322)
Q Consensus 106 diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~ 185 (322)
-++++...+|.-+++|..|++.+-.|-... ..+.+-++.....+.+.| .|+ ....++ +..+ .+..
T Consensus 168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g~--~p~~v~~SpDGr~lyv~~---~dg----~V~viD---~~~~---t~~~ 232 (567)
T 1qks_A 168 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY--AVHISRLSASGRYLFVIG---RDG----KVNMID---LWMK---EPTT 232 (567)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECSS--CEEEEEECTTSCEEEEEE---TTS----EEEEEE---TTSS---SCCE
T ss_pred eEEEEeCCCCeEEEEECCCCeEEEEEeCCC--CccceEECCCCCEEEEEc---CCC----eEEEEE---CCCC---CCcE
Confidence 456666778999999999999998886543 567888888777766543 122 222332 2100 1111
Q ss_pred ceeecccCCCCeEEecC---CCc-eEEEEecCCCeEEEEeccCcEEEEEeccc-------------ceeeEEEcCC-EEE
Q 020740 186 LFESESLKWPGFVEFDD---VNG-KVLTYSAQDSIYKVFDLKNYTMLYSISDK-------------NVQEIKISPG-IML 247 (322)
Q Consensus 186 LFe~~~L~~PgFVEFDd---vNg-kilty~aq~~~YrVfdlknYs~LYsIsde-------------~VqEIkIS~G-iml 247 (322)
+-+-..=..|--+.|+. .+| .+.+.+-..+.+.|||..+.+.+-.|+-. .+..|..|+. -.+
T Consensus 233 v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~ 312 (567)
T 1qks_A 233 VAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEF 312 (567)
T ss_dssp EEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEE
T ss_pred eEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEE
Confidence 22222224577889985 455 56676777899999999999988777621 3445555532 111
Q ss_pred EEEecCCCee---------EEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEE-ecCCceeEEEccccccee
Q 020740 248 LIFTKASGHV---------PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVK-QENENLQILDVRISLFLP 314 (322)
Q Consensus 248 l~~q~~~~~i---------PlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIK-QE~~~LqI~Dl~~~~~~~ 314 (322)
++.....+.+ .+++-.|+.|..++.+. +-.-+.++|+= +....+.++|+.+.+++.
T Consensus 313 vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~-----------~~pdgr~~~va~~~sn~V~ViD~~t~kl~~ 378 (567)
T 1qks_A 313 IVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGG-----------LDGSHRYFITAANARNKLVVIDTKEGKLVA 378 (567)
T ss_dssp EEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEE-----------ECTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred EEEecCCCeEEEEecCCCccceeeeeeccccccCce-----------ECCCCCEEEEEeCCCCeEEEEECCCCcEEE
Confidence 1111111111 23344455554444433 22346777774 456779999999887653
No 161
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=68.13 E-value=42 Score=31.86 Aligned_cols=181 Identities=9% Similarity=-0.013 Sum_probs=96.2
Q ss_pred cceeeecccccEEEEecCCCC-----------------------ceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020740 116 VCAAFCRETNQRICFLNVTAD-----------------------EVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (322)
Q Consensus 116 ~c~af~r~tn~~iC~lN~s~d-----------------------EvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~ 172 (322)
....+|..||+..-.+..... .-|.++-++.+.+.|+++|- ..+. ..
T Consensus 65 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~------~~i~--~~-- 134 (741)
T 2ecf_A 65 DLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG------GELY--LY-- 134 (741)
T ss_dssp EEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET------TEEE--EE--
T ss_pred EEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC------CcEE--EE--
Confidence 566677777776666643221 23667778888888877552 2222 22
Q ss_pred hhhHhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccc-----------------
Q 020740 173 EYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKN----------------- 235 (322)
Q Consensus 173 e~i~~gk~~~g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~----------------- 235 (322)
++..|.-..-..|... -.++..+.|.. +|+-++|.. ++...+||+.+-+..-...+..
T Consensus 135 -d~~~~~~~~~~~l~~~--~~~~~~~~~SP-DG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~ 209 (741)
T 2ecf_A 135 -DLKQEGKAAVRQLTHG--EGFATDAKLSP-KGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMD 209 (741)
T ss_dssp -ESSSCSTTSCCBCCCS--SSCEEEEEECT-TSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSC
T ss_pred -ECCCCCcceEEEcccC--CcccccccCCC-CCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccc
Confidence 2222200001112211 12244566665 566666655 4689999998866543222211
Q ss_pred -eeeEEEc-CCEEEEEEecC------------------------------CCeeEEEEEEeec-Cceeeeeee--ccccC
Q 020740 236 -VQEIKIS-PGIMLLIFTKA------------------------------SGHVPLKILSIED-GTVLKSFNH--LLHRN 280 (322)
Q Consensus 236 -VqEIkIS-~Gimll~~q~~------------------------------~~~iPlkIlsIed-G~~l~~f~~--~L~~s 280 (322)
+..+.+| ||-.|++.... ...+-+.++++.+ |+...-... .-..-
T Consensus 210 ~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 289 (741)
T 2ecf_A 210 RHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYL 289 (741)
T ss_dssp CCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEE
T ss_pred cccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEE
Confidence 3668888 45444443221 1344677888888 875432110 00011
Q ss_pred CcchhhhhccceeEEEe-----cCCceeEEEcccccce
Q 020740 281 KKVDFIEQFNEKLLVKQ-----ENENLQILDVRISLFL 313 (322)
Q Consensus 281 k~iqFiE~f~EkLLIKQ-----E~~~LqI~Dl~~~~~~ 313 (322)
..+.| .=+.+|++-. .+..|.+||+.+.+..
T Consensus 290 ~~~~~--pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~ 325 (741)
T 2ecf_A 290 ARVNW--RDPQHLSFQRQSRDQKKLDLVEVTLASNQQR 325 (741)
T ss_dssp EEEEE--EETTEEEEEEEETTSSEEEEEEEETTTCCEE
T ss_pred EEEEe--CCCCEEEEEEecccCCeEEEEEEECCCCceE
Confidence 23444 4456676543 3567999999887654
No 162
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=68.11 E-value=59 Score=28.10 Aligned_cols=94 Identities=16% Similarity=0.245 Sum_probs=58.7
Q ss_pred CCeEEEEeccCcEEEEEecccceeeEEEcCCEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhhcccee
Q 020740 214 DSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKL 293 (322)
Q Consensus 214 ~~~YrVfdlknYs~LYsIsde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkL 293 (322)
++....+|.++=+.+++........+-+.++.+.+.-. .. -+..++..||+.+-.... ++.. .+--.-..+.+|
T Consensus 248 ~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~l~~~~~-~g---~l~~~d~~tG~~~w~~~~-~~~~-~~~~~~~~~~~l 321 (376)
T 3q7m_A 248 NGNLTALDLRSGQIMWKRELGSVNDFIVDGNRIYLVDQ-ND---RVMALTIDGGVTLWTQSD-LLHR-LLTSPVLYNGNL 321 (376)
T ss_dssp TSCEEEEETTTCCEEEEECCCCEEEEEEETTEEEEEET-TC---CEEEEETTTCCEEEEECT-TTTS-CCCCCEEETTEE
T ss_pred CcEEEEEECCCCcEEeeccCCCCCCceEECCEEEEEcC-CC---eEEEEECCCCcEEEeecc-cCCC-cccCCEEECCEE
Confidence 44455556555555665555556666777777655432 22 256788999998876652 1111 111122357889
Q ss_pred EEEecCCceeEEEcccccce
Q 020740 294 LVKQENENLQILDVRISLFL 313 (322)
Q Consensus 294 LIKQE~~~LqI~Dl~~~~~~ 313 (322)
++=-.+..|.++|..+-++.
T Consensus 322 ~v~~~~g~l~~~d~~tG~~~ 341 (376)
T 3q7m_A 322 VVGDSEGYLHWINVEDGRFV 341 (376)
T ss_dssp EEECTTSEEEEEETTTCCEE
T ss_pred EEEeCCCeEEEEECCCCcEE
Confidence 99888889999999887764
No 163
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=67.08 E-value=48 Score=32.89 Aligned_cols=56 Identities=13% Similarity=0.099 Sum_probs=36.8
Q ss_pred CeEEEEeccCcEEEEEecccc-eee--EEEcCCEEEEEEecCCCeeEEEEEEeecCceeeeee
Q 020740 215 SIYKVFDLKNYTMLYSISDKN-VQE--IKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFN 274 (322)
Q Consensus 215 ~~YrVfdlknYs~LYsIsde~-VqE--IkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~ 274 (322)
+....||+++-+.+.++.... +.- +-..+|++ ++- -..+ -+.+++..||+++.++.
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g~~v-~~g-~~dg--~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVV-FQG-TADG--RLVAYHAATGEKLWEAP 515 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEE-EEE-CTTS--EEEEEETTTCCEEEEEE
T ss_pred cEEEEEeCCCCcEEeecCCCCCCcCcceEeCCCEE-EEE-CCCC--cEEEEECCCCceeeeee
Confidence 778899999999988886432 111 22224443 222 2223 36799999999999987
No 164
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=66.77 E-value=41 Score=29.93 Aligned_cols=73 Identities=15% Similarity=0.328 Sum_probs=55.1
Q ss_pred eEEecCCCceEEEEec-C---------CCeEEEEeccCcEEEEEecccceeeEEEcC-CEEEEEEecCCCeeEEEEEEee
Q 020740 197 FVEFDDVNGKVLTYSA-Q---------DSIYKVFDLKNYTMLYSISDKNVQEIKISP-GIMLLIFTKASGHVPLKILSIE 265 (322)
Q Consensus 197 FVEFDdvNgkilty~a-q---------~~~YrVfdlknYs~LYsIsde~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIe 265 (322)
.+-|+.-.+++.+... + .+...|||+++.+.+-.|+-.....|-++| |-.|+.... + -+.++|.+
T Consensus 258 ~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~p~~ia~spdg~~l~v~n~--~--~v~v~D~~ 333 (361)
T 2oiz_A 258 LVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRDALSMTIDQQRNLMLTLDG--G--NVNVYDIS 333 (361)
T ss_dssp CEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTTCCEEEEETTTTEEEEECS--S--CEEEEECS
T ss_pred EEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCCeeEEEECCCCCEEEEeCC--C--eEEEEECC
Confidence 3678877777766543 1 357899999999999988866688999984 666666654 3 46688999
Q ss_pred cC--ceeeee
Q 020740 266 DG--TVLKSF 273 (322)
Q Consensus 266 dG--~~l~~f 273 (322)
|| ++++.+
T Consensus 334 t~~l~~~~~i 343 (361)
T 2oiz_A 334 QPEPKLLRTI 343 (361)
T ss_dssp SSSCEEEEEE
T ss_pred CCcceeeEEe
Confidence 99 988875
No 165
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=65.89 E-value=41 Score=30.56 Aligned_cols=117 Identities=13% Similarity=0.200 Sum_probs=60.6
Q ss_pred EEeeccchhhhhhccccceeeecc-------cccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020740 100 EIVAARDIVFALAQSGVCAAFCRE-------TNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (322)
Q Consensus 100 EIv~a~diI~aL~~sG~c~af~r~-------tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~ 172 (322)
+.+..+++++.+++.|.....+.. .++-+.-+|-..++.+.++|.-..++.++++| +.=+++.++.
T Consensus 3 dli~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T-------~~G~~~~~~~ 75 (312)
T 1suu_A 3 DLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMIS-------NEGKLYLINA 75 (312)
T ss_dssp -----CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEE-------TTSEEEEEEG
T ss_pred cccCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEE-------CCCeEEEEEH
Confidence 566678899999999998654321 23346666755444444566666788888877 4457777777
Q ss_pred hhhHhCC-CCCCCcceeecccCCC-----CeE---EecCCCceEEEEecCCCeEEEEeccCcE
Q 020740 173 EYIRRGK-PDAGFALFESESLKWP-----GFV---EFDDVNGKVLTYSAQDSIYKVFDLKNYT 226 (322)
Q Consensus 173 e~i~~gk-~~~g~~LFe~~~L~~P-----gFV---EFDdvNgkilty~aq~~~YrVfdlknYs 226 (322)
.+|..+. -..|.|+-..-.|. | +.+ +|+ .+..++.... .|-.+-..+.+|.
T Consensus 76 ~~ip~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~-~~~~ll~~T~-~G~~kr~~l~~~~ 135 (312)
T 1suu_A 76 YEIKDSSRASKGQNISELINLG-DQEEILTIKNSKDLT-DDAYLLLTTA-SGKIARFESTDFK 135 (312)
T ss_dssp GGSCC-------CBGGGTSCCC-TTCCEEEEEEESCCC-TTCEEEEEET-TSEEEEEEGGGGC
T ss_pred HHCCCCCccCCCcChhhccCCC-CCCEEEEEEEeccCC-CCCEEEEEeC-CCeEEEEEHHHhh
Confidence 7775442 23344432221111 1 111 222 2445555544 4444445777664
No 166
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=61.94 E-value=38 Score=32.00 Aligned_cols=114 Identities=15% Similarity=0.096 Sum_probs=54.6
Q ss_pred CCCCCCCcceeecccC---CCCeEEecCCCceEEEEecCCCeEEEEeccCcEE----EEEec----------------cc
Q 020740 178 GKPDAGFALFESESLK---WPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTM----LYSIS----------------DK 234 (322)
Q Consensus 178 gk~~~g~~LFe~~~L~---~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~----LYsIs----------------de 234 (322)
|.+-+|..++.+..-. -|.+. .++ ++|...++ . +||+++=+. |+.-. ..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~w~-----g~~-~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~ 82 (706)
T 2z3z_A 11 GSLMPGGKEFYNFYPEYVVGLQWM-----GDN-YVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAF 82 (706)
T ss_dssp -----------------CTTCEEE-----TTE-EEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------C
T ss_pred ccccCCcccccccccccCCCCcCc-----CCe-EEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhcccccccc
Confidence 4455666666654433 34555 334 45555666 5 999988755 33321 14
Q ss_pred ceeeEEEcCC-EEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEEccc
Q 020740 235 NVQEIKISPG-IMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDVRI 309 (322)
Q Consensus 235 ~VqEIkIS~G-imll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~ 309 (322)
.+..+.+||. .+++... --+.++++.+|+...-..+ ...+.-+. .=+.+|.. -.+.+|.+||+.+
T Consensus 83 ~v~~~~~spd~~~~~~~~-----~~i~~~d~~~~~~~~l~~~----~~~~~~~~~SpdG~~la~-~~~~~i~v~~~~~ 150 (706)
T 2z3z_A 83 PSFRTLDAGRGLVVLFTQ-----GGLVGFDMLARKVTYLFDT----NEETASLDFSPVGDRVAY-VRNHNLYIARGGK 150 (706)
T ss_dssp CCEEEEETTTTEEEEEET-----TEEEEEETTTTEEEEEECC----TTCCTTCEECTTSSEEEE-EETTEEEEEECBC
T ss_pred CceeEEECCCCeEEEEEC-----CEEEEEECCCCceEEccCC----cccccCCcCCCCCCEEEE-EECCeEEEEecCc
Confidence 5888999975 4433322 3567899999977553322 22222222 22456666 4678999999987
No 167
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=60.49 E-value=6 Score=35.64 Aligned_cols=182 Identities=12% Similarity=0.095 Sum_probs=78.6
Q ss_pred ccchhhhhhccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCC
Q 020740 104 ARDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAG 183 (322)
Q Consensus 104 a~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g 183 (322)
..+.|++-+..|.-.|+|..||+.+-.+.. +++.-+-+.. ++.+++++ +.+ ..|.|-.. .-|+.--.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~--~g~~~v~~---s~d-g~l~a~d~-----~tG~~~w~ 74 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV--EEPAFLPD---PND-GSLYTLGS-----KNNEGLTK 74 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-------CCEEEC---TTT-CCEEEC----------CCSEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc--CCCEEEEe---CCC-CEEEEEEC-----CCCceeee
Confidence 567788888889999999999999887766 4555444443 23344431 222 23333221 12221000
Q ss_pred Ccceeec--ccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEc--CCEEEEEEecCCCeeEE
Q 020740 184 FALFESE--SLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS--PGIMLLIFTKASGHVPL 259 (322)
Q Consensus 184 ~~LFe~~--~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS--~Gimll~~q~~~~~iPl 259 (322)
. -+... .-..|-.. .++++.+ -..++....||.++=+.+.+...... +..+ ++.+++-.. ---+
T Consensus 75 ~-~~~~~~~~~~sp~~~----~~~~v~~-g~~dg~v~a~D~~tG~~~w~~~~~~~--~~~~p~~~~v~~~~~----dg~v 142 (369)
T 2hz6_A 75 L-PFTIPELVQASPCRS----SDGILYM-GKKQDIWYVIDLLTGEKQQTLSSAFA--DSLSPSTSLLYLGRT----EYTI 142 (369)
T ss_dssp C-SCCHHHHHTTCSCC---------CCC-CEEEEEEEEECCC------------------------EEEEEE----EEEE
T ss_pred e-eccCccccccCceEe----cCCEEEE-EeCCCEEEEEECCCCcEEEEecCCCc--ccccccCCEEEEEec----CCEE
Confidence 0 00000 01112210 1222222 11234445555554444444433221 2223 344332211 1236
Q ss_pred EEEEeecCceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEEcccccc
Q 020740 260 KILSIEDGTVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDVRISLF 312 (322)
Q Consensus 260 kIlsIedG~~l~~f~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~~ 312 (322)
..++..||+.+-.+..- ....+-+-. .....+++-..+..|.+||..+-++
T Consensus 143 ~a~d~~tG~~~W~~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~ 195 (369)
T 2hz6_A 143 TMYDTKTRELRWNATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDV 195 (369)
T ss_dssp ECCCSSSSSCCCEEEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCE
T ss_pred EEEECCCCCEEEeEecc--cccCccccCCccccceEEEECCCCEEEEEECCCCcE
Confidence 77888999988766521 111111111 1236788888889999999987665
No 168
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=59.03 E-value=88 Score=27.00 Aligned_cols=177 Identities=15% Similarity=0.173 Sum_probs=93.0
Q ss_pred eccchhhhhhccccceeeecccccEEEEecCCCCc----------eEEEEeeecCCCeEEEEEeEecCCCceeeeeeeeh
Q 020740 103 AARDIVFALAQSGVCAAFCRETNQRICFLNVTADE----------VIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRI 172 (322)
Q Consensus 103 ~a~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dE----------vIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~ 172 (322)
..++.|++-+..|.-.++|..||+.+-........ +.-+.... ++.+.+.+ + + ..|.|-..
T Consensus 186 ~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~v~~~~-~---~-g~l~~~d~-- 256 (376)
T 3q7m_A 186 TAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVV--NGVVFALA-Y---N-GNLTALDL-- 256 (376)
T ss_dssp EETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEE--TTEEEEEC-T---T-SCEEEEET--
T ss_pred EECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEE--CCEEEEEe-c---C-cEEEEEEC--
Confidence 34677777777888889999999888765532110 10111111 23444322 1 1 23433322
Q ss_pred hhhHhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEec---ccceeeEEEcCCEEEEE
Q 020740 173 EYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS---DKNVQEIKISPGIMLLI 249 (322)
Q Consensus 173 e~i~~gk~~~g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIs---de~VqEIkIS~Gimll~ 249 (322)
..| ..+.+... ++....-..++++..-+ .++....||.++-+.+++.. ...+...-+.+|.+++.
T Consensus 257 ---~tG-----~~~w~~~~---~~~~~~~~~~~~l~~~~-~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~l~v~ 324 (376)
T 3q7m_A 257 ---RSG-----QIMWKREL---GSVNDFIVDGNRIYLVD-QNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLYNGNLVVG 324 (376)
T ss_dssp ---TTC-----CEEEEECC---CCEEEEEEETTEEEEEE-TTCCEEEEETTTCCEEEEECTTTTSCCCCCEEETTEEEEE
T ss_pred ---CCC-----cEEeeccC---CCCCCceEECCEEEEEc-CCCeEEEEECCCCcEEEeecccCCCcccCCEEECCEEEEE
Confidence 222 22333221 11111111244444433 24455666776666666654 23444555667766443
Q ss_pred EecCCCeeEEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEE
Q 020740 250 FTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILD 306 (322)
Q Consensus 250 ~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~D 306 (322)
-. .. -+..++..||+.+..+.. +...-.--...-+..|+|--++..|.+||
T Consensus 325 ~~--~g--~l~~~d~~tG~~~~~~~~--~~~~~~~~~~~~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 325 DS--EG--YLHWINVEDGRFVAQQKV--DSSGFQTEPVAADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CT--TS--EEEEEETTTCCEEEEEEC--CTTCBCSCCEEETTEEEEEBTTSCEEEEE
T ss_pred eC--CC--eEEEEECCCCcEEEEEec--CCCcceeCCEEECCEEEEEeCCCEEEEEe
Confidence 22 12 477899999999887653 11111111223578999998888898887
No 169
>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1
Probab=57.62 E-value=1.7 Score=36.21 Aligned_cols=56 Identities=27% Similarity=0.437 Sum_probs=43.1
Q ss_pred CcEEEEEecccceee--EEEcCCEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchh
Q 020740 224 NYTMLYSISDKNVQE--IKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (322)
Q Consensus 224 nYs~LYsIsde~VqE--IkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqF 285 (322)
+-++++.++-+.+.+ +.+.+|.++.+.. +|..|.++.+++.+.+|||.|. -+.+.|
T Consensus 85 ~~~~v~~v~~~~f~~~~~~~~~G~~~~~~~-----~~~~V~~v~~~~v~vD~NHPLA-G~~L~F 142 (151)
T 1ix5_A 85 NEMLIQKIPRDAFKEADFEPEEGMVILAEG-----IPATITEVTDNEVTLDFNHELA-GKDLVF 142 (151)
T ss_dssp CSTTBCCEETHHHHTSTTCCCTTEEEESSS-----CEEEEEEEETTEEEEECCCSST-TCCEEE
T ss_pred CccEEEEEEHHHcCccCCcccccCEEEECC-----eEEEEEEEcCCEEEEeCCCCCC-CCeEEE
Confidence 445777777777764 6788998854322 8999999999999999999987 555554
No 170
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=55.56 E-value=1e+02 Score=26.70 Aligned_cols=187 Identities=10% Similarity=0.104 Sum_probs=96.3
Q ss_pred ccccceeeecc-cccEEEEec---CCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCccee
Q 020740 113 QSGVCAAFCRE-TNQRICFLN---VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFE 188 (322)
Q Consensus 113 ~sG~c~af~r~-tn~~iC~lN---~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe 188 (322)
..|...+|+.. +|+..-.+. .....-++++-++.+.+.|.+ +-. .+ ..+. ..+.+. .|++. ++ .
T Consensus 117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~-~~~-~~--~~v~--~~~~~~--~g~~~---~~-~ 184 (365)
T 1jof_A 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS-ADL-TA--NKLW--THRKLA--SGEVE---LV-G 184 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE-EET-TT--TEEE--EEEECT--TSCEE---EE-E
T ss_pred CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE-EcC-CC--CEEE--EEEECC--CCCEE---Ee-e
Confidence 35556677664 354432222 123445777878776665543 211 11 1222 222211 23320 01 1
Q ss_pred ec---c-cCCCCeEEecCCCceEEEEecCCCeEEEEecc--CcEE------EEEeccc------------ceeeEE-EcC
Q 020740 189 SE---S-LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK--NYTM------LYSISDK------------NVQEIK-ISP 243 (322)
Q Consensus 189 ~~---~-L~~PgFVEFDdvNgkilty~aq~~~YrVfdlk--nYs~------LYsIsde------------~VqEIk-IS~ 243 (322)
.. . -.+|--+.|+.-...+.+.+..++...||++. +=++ +-.++.. .+.++. +||
T Consensus 185 ~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~sp 264 (365)
T 1jof_A 185 SVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTF 264 (365)
T ss_dssp EEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECT
T ss_pred eEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECC
Confidence 11 1 34577788987555565556567899999875 2122 1223221 478899 984
Q ss_pred -CEEEEEEecCCCe---eEEEEEEee-cCceeeeeeec-ccc---C----CcchhhhhccceeEEE-ecCCceeEEEccc
Q 020740 244 -GIMLLIFTKASGH---VPLKILSIE-DGTVLKSFNHL-LHR---N----KKVDFIEQFNEKLLVK-QENENLQILDVRI 309 (322)
Q Consensus 244 -Gimll~~q~~~~~---iPlkIlsIe-dG~~l~~f~~~-L~~---s----k~iqFiE~f~EkLLIK-QE~~~LqI~Dl~~ 309 (322)
|-.|++....++. =-+.++++. +|+...-.... .+. . .+-+| -+.+|++= |++..+++||+..
T Consensus 265 dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~---dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 265 SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPW---SDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTT---CTTEEEEECSSSCEEEEEEEET
T ss_pred CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCc---CCCEEEEEEcCCCeEEEEEEch
Confidence 6555555544431 035788885 78754321110 011 1 12222 35677776 4568999999976
Q ss_pred cccee
Q 020740 310 SLFLP 314 (322)
Q Consensus 310 ~~~~~ 314 (322)
..+.+
T Consensus 342 ~~l~~ 346 (365)
T 1jof_A 342 EFLHR 346 (365)
T ss_dssp TEEEE
T ss_pred hhCce
Confidence 54443
No 171
>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A
Probab=53.21 E-value=4.7 Score=34.20 Aligned_cols=57 Identities=33% Similarity=0.472 Sum_probs=44.4
Q ss_pred cCcEEEEEecccceee--EEEcCCEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchh
Q 020740 223 KNYTMLYSISDKNVQE--IKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF 285 (322)
Q Consensus 223 knYs~LYsIsde~VqE--IkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqF 285 (322)
++-+++..++.+.+.+ +.+.+|.++.+-. -+..|..+.+++.+.+|||.|. -+.+.|
T Consensus 83 ~~~~~V~~v~~~~f~~~~~~~~~G~~~~~~~-----~~~~V~~v~~~~V~vD~NHPLA-G~~L~F 141 (157)
T 3pr9_A 83 RDPSKIKLIPLSEFTKRGIKPIKGLTITIDG-----IPGKIVSINSGRVLVDFNHELA-GKEVKY 141 (157)
T ss_dssp CCGGGEEEEEHHHHHHTTCCCCTTCEEEETT-----EEEEEEEEETTEEEEECSCTTT-TCCEEE
T ss_pred CChHhEEEcCHHHCCcccCCcCCCcEEEecC-----CCeEEEEEcCCEEEEECCCccC-CCeEEE
Confidence 4556788888888873 7778898876522 2689999999999999999998 666665
No 172
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=52.21 E-value=2.1e+02 Score=29.19 Aligned_cols=114 Identities=11% Similarity=-0.041 Sum_probs=67.6
Q ss_pred CCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEe--cccceeeEEEc-CCEEEEEEecC-------CCeeEEEEEEe
Q 020740 195 PGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSI--SDKNVQEIKIS-PGIMLLIFTKA-------SGHVPLKILSI 264 (322)
Q Consensus 195 PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsI--sde~VqEIkIS-~Gimll~~q~~-------~~~iPlkIlsI 264 (322)
+..+.|.. +|+.|++...++..++||+.+-+..-.+ ....+..+.+| +|-.|+..... ...--+.++++
T Consensus 381 ~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~ 459 (1045)
T 1k32_A 381 VFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDM 459 (1045)
T ss_dssp EEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred eeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEEC
Confidence 34556654 6888888889999999999887654443 34457888898 45544443322 22345788999
Q ss_pred ecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEEccccc
Q 020740 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISL 311 (322)
Q Consensus 265 edG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~ 311 (322)
.+|+. ..+..-......+.|- .=+.+|+.--+.....+||..+..
T Consensus 460 ~~g~~-~~l~~~~~~~~~~~~s-pdG~~l~~~s~~~~~~~~~~~~~~ 504 (1045)
T 1k32_A 460 EGRKI-FAATTENSHDYAPAFD-ADSKNLYYLSYRSLDPSPDRVVLN 504 (1045)
T ss_dssp TTTEE-EECSCSSSBEEEEEEC-TTSCEEEEEESCCCCCEECSSSSC
T ss_pred CCCcE-EEeeCCCcccCCceEc-CCCCEEEEEecccCCcCcchhccc
Confidence 99883 3322101111112221 125567776666666777766543
No 173
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=49.72 E-value=1.1e+02 Score=25.24 Aligned_cols=82 Identities=9% Similarity=0.059 Sum_probs=55.9
Q ss_pred cccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc-cceeeEEEcCCEEEEEEecCCCeeEEEEEEeecCc
Q 020740 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD-KNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGT 268 (322)
Q Consensus 190 ~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsd-e~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~ 268 (322)
..+.+|--+-+|..++++...+...+...+||+.+-...-.++. ..-..|-+.+|.+...-...+ . +..++..+|+
T Consensus 164 ~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d~~~lyva~~~~~-~--v~~~d~~~g~ 240 (267)
T 1npe_A 164 DNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSYGKNLYYTDWKTN-S--VIAMDLAISK 240 (267)
T ss_dssp TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEETTEEEEEETTTT-E--EEEEETTTTE
T ss_pred CCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEeCCEEEEEECCCC-e--EEEEeCCCCC
Confidence 45789999999999999999999999999999986543222221 233455565665544433333 3 3677888888
Q ss_pred eeeeee
Q 020740 269 VLKSFN 274 (322)
Q Consensus 269 ~l~~f~ 274 (322)
.+..+.
T Consensus 241 ~~~~i~ 246 (267)
T 1npe_A 241 EMDTFH 246 (267)
T ss_dssp EEEEEC
T ss_pred ceEEEc
Confidence 887664
No 174
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=47.97 E-value=1.6e+02 Score=26.53 Aligned_cols=179 Identities=6% Similarity=0.021 Sum_probs=91.9
Q ss_pred cceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceeecccCCC
Q 020740 116 VCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLKWP 195 (322)
Q Consensus 116 ~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~~~L~~P 195 (322)
....+|..|++.....+ ....+.++-++.+...|++++. .|.-. +.+..+ +..|++ ..|.... ...
T Consensus 204 ~i~~~d~~tg~~~~l~~--~~~~~~~~~~spdg~~la~~~~--~~g~~--~i~~~d---~~~~~~---~~l~~~~--~~~ 269 (415)
T 2hqs_A 204 ALVIQTLANGAVRQVAS--FPRHNGAPAFSPDGSKLAFALS--KTGSL--NLYVMD---LASGQI---RQVTDGR--SNN 269 (415)
T ss_dssp EEEEEETTTCCEEEEEC--CSSCEEEEEECTTSSEEEEEEC--TTSSC--EEEEEE---TTTCCE---EECCCCS--SCE
T ss_pred EEEEEECCCCcEEEeec--CCCcccCEEEcCCCCEEEEEEe--cCCCc--eEEEEE---CCCCCE---EeCcCCC--Ccc
Confidence 45567777777654433 2335777888877777775332 22212 222222 222221 1121111 112
Q ss_pred CeEEecCCCceEEEEecC-CC--eEEEEeccCcEEEEEe--cccceeeEEEc-CCEEEEEEecCCCeeEEEEEEeecCce
Q 020740 196 GFVEFDDVNGKVLTYSAQ-DS--IYKVFDLKNYTMLYSI--SDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTV 269 (322)
Q Consensus 196 gFVEFDdvNgkilty~aq-~~--~YrVfdlknYs~LYsI--sde~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~ 269 (322)
.-+.|.. +|+-+++... ++ ...+||+.+-+. ..+ ....+..+.+| +|-.|++.....+..-+.++++++|+.
T Consensus 270 ~~~~~sp-dg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~ 347 (415)
T 2hqs_A 270 TEPTWFP-DSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV 347 (415)
T ss_dssp EEEEECT-TSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred cceEECC-CCCEEEEEECCCCCcEEEEEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE
Confidence 2345654 4665555444 45 455558776542 233 33467778887 455555544444456788999999987
Q ss_pred eeeeeeccccCCcchhhhhccceeEEEecCC---ceeEEEcccccce
Q 020740 270 LKSFNHLLHRNKKVDFIEQFNEKLLVKQENE---NLQILDVRISLFL 313 (322)
Q Consensus 270 l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~---~LqI~Dl~~~~~~ 313 (322)
..-..+ ..-..+.|- .=+..|+.--.+. .|.+||+...+..
T Consensus 348 ~~l~~~--~~~~~~~~s-pdg~~l~~~s~~~~~~~l~~~d~~g~~~~ 391 (415)
T 2hqs_A 348 QVLSST--FLDETPSLA-PNGTMVIYSSSQGMGSVLNLVSTDGRFKA 391 (415)
T ss_dssp EECCCS--SSCEEEEEC-TTSSEEEEEEEETTEEEEEEEETTSCCEE
T ss_pred EEecCC--CCcCCeEEc-CCCCEEEEEEcCCCccEEEEEECCCCcEE
Confidence 431111 011112221 1245566655444 7999999766543
No 175
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=47.70 E-value=1.8e+02 Score=28.53 Aligned_cols=106 Identities=11% Similarity=0.138 Sum_probs=73.4
Q ss_pred ecCCCceEEEEecCCCeEEEEeccCcEEEEEec-ccceeeEEEc-CCEEEEEEecCCCeeEEEEEEee--cCceeeeeee
Q 020740 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIE--DGTVLKSFNH 275 (322)
Q Consensus 200 FDdvNgkilty~aq~~~YrVfdlknYs~LYsIs-de~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIe--dG~~l~~f~~ 275 (322)
.| ..+.++.-+..++...|||..+.+.+-.|. ...++.+.+| +|-.|++..... -+.++|+. +++.+..+..
T Consensus 163 ~d-~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~dg---~V~viD~~~~t~~~v~~i~~ 238 (567)
T 1qks_A 163 WD-LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDG---KVNMIDLWMKEPTTVAEIKI 238 (567)
T ss_dssp CC-GGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTS---EEEEEETTSSSCCEEEEEEC
T ss_pred cC-CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcCCC---eEEEEECCCCCCcEeEEEec
Confidence 44 356777778889999999999999998885 3467899999 466666655432 47888985 8888876542
Q ss_pred ccccCCcchhhhhc------cceeEEEec-CCceeEEEcccccce
Q 020740 276 LLHRNKKVDFIEQF------NEKLLVKQE-NENLQILDVRISLFL 313 (322)
Q Consensus 276 ~L~~sk~iqFiE~f------~EkLLIKQE-~~~LqI~Dl~~~~~~ 313 (322)
...+.-+... +.++++=-+ +..+.|+|..+.+.+
T Consensus 239 ----G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~ 279 (567)
T 1qks_A 239 ----GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 279 (567)
T ss_dssp ----CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEE
T ss_pred ----CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEE
Confidence 1122223333 557777664 478899998775543
No 176
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=47.31 E-value=1.4e+02 Score=25.84 Aligned_cols=122 Identities=8% Similarity=0.026 Sum_probs=70.7
Q ss_pred cCCCCeEEecCCCceEEEEecCCCeEEEEecc-C--cEEEEEec----ccceeeEEEcC-CEEEEEEecCCCeeEEEEEE
Q 020740 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLK-N--YTMLYSIS----DKNVQEIKISP-GIMLLIFTKASGHVPLKILS 263 (322)
Q Consensus 192 L~~PgFVEFDdvNgkilty~aq~~~YrVfdlk-n--Ys~LYsIs----de~VqEIkIS~-Gimll~~q~~~~~iPlkIls 263 (322)
-.+|-.+.|+.-...+.+-+..++..++||+. + ...+..+. ......+.+|| |-.|++.....+.+-+--++
T Consensus 144 ~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence 35678888987555565556667899999997 3 33444553 45688888984 54555555555554333334
Q ss_pred eecCceeee--eeeccccC--------------CcchhhhhccceeEEEecCC------ceeEEEcc-cccce
Q 020740 264 IEDGTVLKS--FNHLLHRN--------------KKVDFIEQFNEKLLVKQENE------NLQILDVR-ISLFL 313 (322)
Q Consensus 264 IedG~~l~~--f~~~L~~s--------------k~iqFiE~f~EkLLIKQE~~------~LqI~Dl~-~~~~~ 313 (322)
..+|+.... ....++.. ..+.|+-.=+.+|++=-.+. .+++||+. +.++.
T Consensus 224 ~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~ 296 (365)
T 1jof_A 224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE 296 (365)
T ss_dssp TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred CCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence 447875421 11122211 12333334456787765443 79999996 44443
No 177
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=47.22 E-value=1.5e+02 Score=30.30 Aligned_cols=109 Identities=7% Similarity=0.025 Sum_probs=63.3
Q ss_pred eEEecCCCceEEEEecCCCeEE-EEeccCcEEEEEec--ccceeeEEEcC-CEEEEEEecCCCeeEEEEEEeecCceeee
Q 020740 197 FVEFDDVNGKVLTYSAQDSIYK-VFDLKNYTMLYSIS--DKNVQEIKISP-GIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (322)
Q Consensus 197 FVEFDdvNgkilty~aq~~~Yr-VfdlknYs~LYsIs--de~VqEIkIS~-Gimll~~q~~~~~iPlkIlsIedG~~l~~ 272 (322)
.+.|. +|+-++|...++... +||+.+-+. -.+. ...+..+.+|| |-.|++..... .+.++++++|+...-
T Consensus 342 ~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~-~~l~~~~~~~~~~~~SpDG~~la~~~~~~---~v~~~d~~tg~~~~~ 415 (1045)
T 1k32_A 342 RRGGD--TKVAFIHGTREGDFLGIYDYRTGKA-EKFEENLGNVFAMGVDRNGKFAVVANDRF---EIMTVDLETGKPTVI 415 (1045)
T ss_dssp EECSS--SEEEEEEEETTEEEEEEEETTTCCE-EECCCCCCSEEEEEECTTSSEEEEEETTS---EEEEEETTTCCEEEE
T ss_pred eeeEc--CCCeEEEEECCCceEEEEECCCCCc-eEecCCccceeeeEECCCCCEEEEECCCC---eEEEEECCCCceEEe
Confidence 35565 677777766665555 778776432 2332 35678888884 55555444332 577999999988765
Q ss_pred eeeccccCCcchhhhhccceeEEEecC----------CceeEEEcccccc
Q 020740 273 FNHLLHRNKKVDFIEQFNEKLLVKQEN----------ENLQILDVRISLF 312 (322)
Q Consensus 273 f~~~L~~sk~iqFiE~f~EkLLIKQE~----------~~LqI~Dl~~~~~ 312 (322)
+...-..-..+.|- .=+.+|+.-..+ ..+.+||+.+.++
T Consensus 416 ~~~~~~~v~~~~~S-pDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~ 464 (1045)
T 1k32_A 416 ERSREAMITDFTIS-DNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI 464 (1045)
T ss_dssp EECSSSCCCCEEEC-TTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE
T ss_pred ccCCCCCccceEEC-CCCCeEEEEecCccccccCCCCCeEEEEECCCCcE
Confidence 42100111223331 124456554332 4899999987664
No 178
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=46.27 E-value=1.6e+02 Score=26.32 Aligned_cols=107 Identities=13% Similarity=0.110 Sum_probs=71.8
Q ss_pred CCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEE-cCCEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCC
Q 020740 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKI-SPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK 281 (322)
Q Consensus 203 vNgkilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkI-S~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk 281 (322)
.++++-.-.-+++.--|||.++.+.+=+|+-.. .-.=+ .+|-.|.+.++ .+. +.++|-+|+++++++.--. ..+
T Consensus 73 ~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~-~Gwglt~dg~~L~vSdg-s~~--l~~iDp~t~~~~~~I~V~~-~g~ 147 (243)
T 3mbr_X 73 WRDRLIQLTWRNHEGFVYDLATLTPRARFRYPG-EGWALTSDDSHLYMSDG-TAV--IRKLDPDTLQQVGSIKVTA-GGR 147 (243)
T ss_dssp ETTEEEEEESSSSEEEEEETTTTEEEEEEECSS-CCCEEEECSSCEEEECS-SSE--EEEECTTTCCEEEEEECEE-TTE
T ss_pred eCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCC-CceEEeeCCCEEEEECC-CCe--EEEEeCCCCeEEEEEEEcc-CCc
Confidence 367887777889999999999999888777432 11112 23444455555 343 6889999999999876321 233
Q ss_pred cchh---hhhccceeEEEe-cCCceeEEEccccccee
Q 020740 282 KVDF---IEQFNEKLLVKQ-ENENLQILDVRISLFLP 314 (322)
Q Consensus 282 ~iqF---iE~f~EkLLIKQ-E~~~LqI~Dl~~~~~~~ 314 (322)
++.+ ||.-+.+|++-- ....+.++|..+-+.+.
T Consensus 148 ~~~~lNeLe~~~G~lyanvw~s~~I~vIDp~tG~V~~ 184 (243)
T 3mbr_X 148 PLDNLNELEWVNGELLANVWLTSRIARIDPASGKVVA 184 (243)
T ss_dssp ECCCEEEEEEETTEEEEEETTTTEEEEECTTTCBEEE
T ss_pred ccccceeeEEeCCEEEEEECCCCeEEEEECCCCCEEE
Confidence 3333 345577888876 56678888888877654
No 179
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=44.80 E-value=1.2e+02 Score=27.97 Aligned_cols=105 Identities=10% Similarity=0.124 Sum_probs=57.0
Q ss_pred CCceEEEEecC-CCeEEEEeccCcEEEEEecc---cceeeEEEcCCEEEEEEec--CCCeeEEEEEEe-ecCceeeeeee
Q 020740 203 VNGKVLTYSAQ-DSIYKVFDLKNYTMLYSISD---KNVQEIKISPGIMLLIFTK--ASGHVPLKILSI-EDGTVLKSFNH 275 (322)
Q Consensus 203 vNgkilty~aq-~~~YrVfdlknYs~LYsIsd---e~VqEIkIS~Gimll~~q~--~~~~iPlkIlsI-edG~~l~~f~~ 275 (322)
.+|+-|+|... ++..++|++.+-+. -.+.. ..+..+..||+-+++.... .....-+-+++. .+|+.. .+
T Consensus 31 ~DG~~la~~s~~~g~~~lw~~~~g~~-~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l-- 106 (582)
T 3o4h_A 31 VDGDKLLVVGFSEGSVNAYLYDGGET-VKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQ-RL-- 106 (582)
T ss_dssp ETTTEEEEEEEETTEEEEEEEETTEE-EECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCE-EC--
T ss_pred CCCCeEEEEEccCCceeEEEEcCCCc-EeeecccccccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccc-cc--
Confidence 36788888766 99999999976553 34443 2577788888855444433 223333444554 133332 11
Q ss_pred ccccCCcchhhh--hccc-eeEEEecCCceeEEEcccccce
Q 020740 276 LLHRNKKVDFIE--QFNE-KLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 276 ~L~~sk~iqFiE--~f~E-kLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
.........- .-+. .+++--....+.+||+.+.+..
T Consensus 107 --~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~ 145 (582)
T 3o4h_A 107 --EAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLR 145 (582)
T ss_dssp --TTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEE
T ss_pred --cCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEE
Confidence 1111111111 1122 2455555666779999876644
No 180
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=44.60 E-value=1.6e+02 Score=27.82 Aligned_cols=110 Identities=13% Similarity=0.077 Sum_probs=64.3
Q ss_pred CCCeEEecCCCceEEEEecC-CC-----eEEEEeccCcEEEEEecc--------------------------cceeeEEE
Q 020740 194 WPGFVEFDDVNGKVLTYSAQ-DS-----IYKVFDLKNYTMLYSISD--------------------------KNVQEIKI 241 (322)
Q Consensus 194 ~PgFVEFDdvNgkilty~aq-~~-----~YrVfdlknYs~LYsIsd--------------------------e~VqEIkI 241 (322)
.|-.+.|.. +|+-|++... ++ ..++||+.+-+..-.+.. ..+..+.+
T Consensus 38 ~~~~~~~Sp-dG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 116 (741)
T 2ecf_A 38 TLMKPKVAP-DGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQW 116 (741)
T ss_dssp CCEEEEECT-TSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEE
T ss_pred CCCCceEec-CCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEE
Confidence 455666654 5666666555 77 899999998775444432 23677888
Q ss_pred c-CCEEEEEEecCCCeeEEEEEEeecC---ceeeeeeeccccCCcchhhh--hccceeEEEecCCceeEEEcccccce
Q 020740 242 S-PGIMLLIFTKASGHVPLKILSIEDG---TVLKSFNHLLHRNKKVDFIE--QFNEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 242 S-~Gimll~~q~~~~~iPlkIlsIedG---~~l~~f~~~L~~sk~iqFiE--~f~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
| ||-.|++... --+.++++.+| +... +. .....+..+. .=+.+|..-. +..|.+||+.+.+..
T Consensus 117 SpDg~~l~~~~~----~~i~~~d~~~~~~~~~~~-l~---~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 117 SPDAQRLLFPLG----GELYLYDLKQEGKAAVRQ-LT---HGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQM 185 (741)
T ss_dssp CTTSSEEEEEET----TEEEEEESSSCSTTSCCB-CC---CSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEE
T ss_pred CCCCCEEEEEeC----CcEEEEECCCCCcceEEE-cc---cCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEE
Confidence 8 4555555443 34678899998 4332 21 1111221111 1244555544 458999999876543
No 181
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=44.28 E-value=1.5e+02 Score=25.18 Aligned_cols=78 Identities=10% Similarity=0.081 Sum_probs=53.5
Q ss_pred CCCeEEecCCCceEEEEecC-CCeEEEEecc----CcEEEEEec-ccceeeEEEc-CCEEEEEEecCCCeeEEEEEEeec
Q 020740 194 WPGFVEFDDVNGKVLTYSAQ-DSIYKVFDLK----NYTMLYSIS-DKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIED 266 (322)
Q Consensus 194 ~PgFVEFDdvNgkilty~aq-~~~YrVfdlk----nYs~LYsIs-de~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIed 266 (322)
.|.-+.|+.-...+.+.+.. ++..+||++. ..+.+-.++ ...+..+.+| +|-.|++.....+.+-+--++.++
T Consensus 260 ~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~ 339 (361)
T 3scy_A 260 GSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPNGKYLLVACRDTNVIQIFERDQAT 339 (361)
T ss_dssp CEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTT
T ss_pred CcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCCCCEEEEEECCCCCEEEEEEECCC
Confidence 34578888654445555555 6899999995 455666555 4567788898 466777777666766555567788
Q ss_pred Cceee
Q 020740 267 GTVLK 271 (322)
Q Consensus 267 G~~l~ 271 (322)
|+...
T Consensus 340 g~~~~ 344 (361)
T 3scy_A 340 GLLTD 344 (361)
T ss_dssp CCEEE
T ss_pred CcEee
Confidence 88665
No 182
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=44.20 E-value=1.1e+02 Score=25.61 Aligned_cols=66 Identities=18% Similarity=0.216 Sum_probs=41.7
Q ss_pred CceEEEEecC---------CCeEEEEeccCcEEEEEecccceeeEEEc-CCEEEEEEecCC--CeeEEEEEEeecCceee
Q 020740 204 NGKVLTYSAQ---------DSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKAS--GHVPLKILSIEDGTVLK 271 (322)
Q Consensus 204 Ngkilty~aq---------~~~YrVfdlknYs~LYsIsde~VqEIkIS-~Gimll~~q~~~--~~iPlkIlsIedG~~l~ 271 (322)
+|+-++|... ++...+||+.+-+. ..+ ..+..+.+| +|-.|++..... ...-+.++++.+|+...
T Consensus 23 dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~l--~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~ 99 (347)
T 2gop_A 23 KGELVAYVLTKANLKDNKYENTIVIENLKNNAR-RFI--ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKK 99 (347)
T ss_dssp ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCE-EEE--ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEE
T ss_pred CCcEEEEEEeecCcccCCccceEEEEeCCCCce-EEc--ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEE
Confidence 5777777532 45667888877542 233 567889999 454444443332 45567888888887655
Q ss_pred e
Q 020740 272 S 272 (322)
Q Consensus 272 ~ 272 (322)
-
T Consensus 100 l 100 (347)
T 2gop_A 100 I 100 (347)
T ss_dssp E
T ss_pred E
Confidence 3
No 183
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=43.31 E-value=2.2e+02 Score=26.85 Aligned_cols=187 Identities=10% Similarity=0.162 Sum_probs=98.1
Q ss_pred ccceeeecccccEEEEec-CCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCcceeecccC
Q 020740 115 GVCAAFCRETNQRICFLN-VTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFESESLK 193 (322)
Q Consensus 115 G~c~af~r~tn~~iC~lN-~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe~~~L~ 193 (322)
+....+|..+++.....- ..++.-+.++-++.+.+.|.+++.-... .....+..+. ..|+ ....+++...-.
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~--~~~~v~~~d~---~~g~--~~~~~~~~~~~~ 307 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQ--NECKVNAYDA---ETGR--FVRTLFVETDKH 307 (706)
T ss_dssp EEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTS--CEEEEEEEET---TTCC--EEEEEEEEECSS
T ss_pred eEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCC--CeeEEEEEEC---CCCc--eeeEEEEccCCC
Confidence 344567777776554332 2456678889888887777775532111 2334444432 2221 112233322222
Q ss_pred CC---CeEEecC-CCceEEEEecCCCeEEEEecc-CcEEEEEecccc--eee-EEEcC-CEEEEEEecCCC--eeEEEEE
Q 020740 194 WP---GFVEFDD-VNGKVLTYSAQDSIYKVFDLK-NYTMLYSISDKN--VQE-IKISP-GIMLLIFTKASG--HVPLKIL 262 (322)
Q Consensus 194 ~P---gFVEFDd-vNgkilty~aq~~~YrVfdlk-nYs~LYsIsde~--VqE-IkIS~-Gimll~~q~~~~--~iPlkIl 262 (322)
|- .-+.|.. .+|+.+.....++..++|++. +-..+-.|.... +.. +.+|| |-.|++.....+ ..-+-.+
T Consensus 308 ~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~ 387 (706)
T 2z3z_A 308 YVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCI 387 (706)
T ss_dssp CCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEE
T ss_pred eECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEE
Confidence 21 2245654 377877766678889999987 566777776543 444 56773 433333333332 3556667
Q ss_pred EeecCceeeeeeeccccCCcchhhhhccceeEEEecC----CceeEEEccccc
Q 020740 263 SIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEN----ENLQILDVRISL 311 (322)
Q Consensus 263 sIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~----~~LqI~Dl~~~~ 311 (322)
++.+|+ +..+.+. ..-..+.|- .=+.+|+.-..+ ..+.+||+.+.+
T Consensus 388 d~~~~~-~~~l~~~-~~~~~~~~s-pdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 388 DIKGGK-TKDLTPE-SGMHRTQLS-PDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp ETTCCC-CEESCCS-SSEEEEEEC-TTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EcCCCC-ceeccCC-CceEEEEEC-CCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 777776 2222210 000112221 124556665443 348999987765
No 184
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=43.22 E-value=1.6e+02 Score=25.27 Aligned_cols=147 Identities=12% Similarity=0.067 Sum_probs=80.4
Q ss_pred hccccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHhCCCCCCCccee--e
Q 020740 112 AQSGVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRRGKPDAGFALFE--S 189 (322)
Q Consensus 112 ~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~gk~~~g~~LFe--~ 189 (322)
+..+.-.+||+ +|+.+=.+......-+.++=...+...|+..+. ++ ..+ ..++ ..||+-...++=. .
T Consensus 53 s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~---~~-~~v--~~vd----~~Gk~l~~~~~~~~~~ 121 (276)
T 3no2_A 53 SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCG---HP-STI--LEVN----MKGEVLSKTEFETGIE 121 (276)
T ss_dssp ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEES---TT-EEE--EEEC----TTSCEEEEEEECCSCS
T ss_pred eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecC---CC-CEE--EEEe----CCCCEEEEEeccCCCC
Confidence 44566788898 898888777643334566655666665555331 01 112 2221 1333211111100 1
Q ss_pred cccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEeccc-ceee-EEEcCCEEEEEEecCCCeeEEEEEEeecC
Q 020740 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-NVQE-IKISPGIMLLIFTKASGHVPLKILSIEDG 267 (322)
Q Consensus 190 ~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde-~VqE-IkIS~Gimll~~q~~~~~iPlkIlsIedG 267 (322)
....+|..+-++. ||.++..+..++...+||.+ =+.+.+.... .... ..+.+|.+++.-...+ -+..++.+||
T Consensus 122 ~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~---~v~~~d~~tG 196 (276)
T 3no2_A 122 RPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAH---CFVQLNLESN 196 (276)
T ss_dssp SGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTS---EEEEECTTTC
T ss_pred cccccccCceECC-CCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCC---eEEEEeCcCC
Confidence 1234566666544 66666666667777777776 5666665532 2222 3344676655443332 3788999999
Q ss_pred ceeeeee
Q 020740 268 TVLKSFN 274 (322)
Q Consensus 268 ~~l~~f~ 274 (322)
+.+-++.
T Consensus 197 ~~~w~~~ 203 (276)
T 3no2_A 197 RIVRRVN 203 (276)
T ss_dssp CEEEEEE
T ss_pred cEEEEec
Confidence 9998886
No 185
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=41.14 E-value=1.5e+02 Score=24.25 Aligned_cols=113 Identities=12% Similarity=0.267 Sum_probs=69.0
Q ss_pred cccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecc--------cceeeEEE--cCCEEEEEEecCCCeeEE
Q 020740 190 ESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISD--------KNVQEIKI--SPGIMLLIFTKASGHVPL 259 (322)
Q Consensus 190 ~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsd--------e~VqEIkI--S~Gimll~~q~~~~~iPl 259 (322)
..+..|--+-+|. +|+++..+..++...+||..+ ..+..+.. .....|.+ .+|.+++.-....+ -+
T Consensus 27 g~~~~p~~v~~~~-~g~l~v~~~~~~~i~~~d~~g-~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~--~i 102 (286)
T 1q7f_A 27 GQFTEPSGVAVNA-QNDIIVADTNNHRIQIFDKEG-RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTH--QI 102 (286)
T ss_dssp TCBSCEEEEEECT-TCCEEEEEGGGTEEEEECTTS-CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGC--EE
T ss_pred CccCCCceEEECC-CCCEEEEECCCCEEEEECCCC-cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCC--EE
Confidence 4567899999986 467888888888999999874 44555542 35778888 36666554422122 25
Q ss_pred EEEEeecCceeeeeeec-cccCCcchhhhhccceeEEEe-cCCceeEEEccc
Q 020740 260 KILSIEDGTVLKSFNHL-LHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVRI 309 (322)
Q Consensus 260 kIlsIedG~~l~~f~~~-L~~sk~iqFiE~f~EkLLIKQ-E~~~LqI~Dl~~ 309 (322)
.+++ .+|+.+..+... +..-..+.|-. ..+|+|-. .+..+.+||...
T Consensus 103 ~~~d-~~g~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~g 151 (286)
T 1q7f_A 103 QIYN-QYGQFVRKFGATILQHPRGVTVDN--KGRIIVVECKVMRVIIFDQNG 151 (286)
T ss_dssp EEEC-TTSCEEEEECTTTCSCEEEEEECT--TSCEEEEETTTTEEEEECTTS
T ss_pred EEEC-CCCcEEEEecCccCCCceEEEEeC--CCCEEEEECCCCEEEEEcCCC
Confidence 6677 688877765321 01111122211 34577765 456788888644
No 186
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=40.46 E-value=1.3e+02 Score=23.53 Aligned_cols=174 Identities=13% Similarity=0.055 Sum_probs=85.0
Q ss_pred ccceeeecccccEEEEecCCCCceEEEEeeecCCCeEEEEEeEecCCCceeeeeeeehhhhHh-CCCCCCCcceeecccC
Q 020740 115 GVCAAFCRETNQRICFLNVTADEVIRSLFYNKNNDSLITVSVYASDNFSSLRCRSTRIEYIRR-GKPDAGFALFESESLK 193 (322)
Q Consensus 115 G~c~af~r~tn~~iC~lN~s~dEvIrSiFyNk~NdSlItvSvy~sd~fS~LkCr~~~~e~i~~-gk~~~g~~LFe~~~L~ 193 (322)
|.-.+||..+++...+.. +...|.++-++.+...|++.+ +. .+ +.. ++.. |+. ..++....-.
T Consensus 22 ~~i~~~d~~~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~----~~--~i--~~~---d~~~~~~~---~~~~~~~~~~ 85 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRVVWQ--TPELFEAPNWSPDGKYLLLNS----EG--LL--YRL---SLAGDPSP---EKVDTGFATI 85 (297)
T ss_dssp EEEEEEETTTTEEEEEEE--ESSCCEEEEECTTSSEEEEEE----TT--EE--EEE---ESSSCCSC---EECCCTTCCC
T ss_pred eeEEEEeCCCCceeeecc--CCcceEeeEECCCCCEEEEEc----CC--eE--EEE---eCCCCCCc---eEeccccccc
Confidence 344556666666665544 244567777777666555522 22 22 222 1222 221 1122211112
Q ss_pred CCCeEEecCCCceEEEEec--CCCeEEEEecc--CcEEEEEe-cccceeeEEEc-CCEEEEEEecCCCeeEEEEEEeecC
Q 020740 194 WPGFVEFDDVNGKVLTYSA--QDSIYKVFDLK--NYTMLYSI-SDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDG 267 (322)
Q Consensus 194 ~PgFVEFDdvNgkilty~a--q~~~YrVfdlk--nYs~LYsI-sde~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG 267 (322)
.+.-+.|.. +|+.+++.. .++..++|.+. +-. +..+ ....+..+.++ +|-.|++.......+-+-.+++.+|
T Consensus 86 ~~~~~~~sp-dg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~ 163 (297)
T 2ojh_A 86 CNNDHGISP-DGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG 163 (297)
T ss_dssp BCSCCEECT-TSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC
T ss_pred cccceEECC-CCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC
Confidence 233456655 566666655 34566777663 322 2333 23346667787 4554444444445555555556666
Q ss_pred ceeeeeeeccccCCcchhhhhccceeEEEe-cCCceeEEEcc
Q 020740 268 TVLKSFNHLLHRNKKVDFIEQFNEKLLVKQ-ENENLQILDVR 308 (322)
Q Consensus 268 ~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQ-E~~~LqI~Dl~ 308 (322)
+...-..+. ..-..+.|- .-+.+|++-. .+..++||++.
T Consensus 164 ~~~~~~~~~-~~~~~~~~s-~dg~~l~~~~~~~~~~~i~~~~ 203 (297)
T 2ojh_A 164 VETRLTHGE-GRNDGPDYS-PDGRWIYFNSSRTGQMQIWRVR 203 (297)
T ss_dssp CEEECCCSS-SCEEEEEEC-TTSSEEEEEECTTSSCEEEEEE
T ss_pred cceEcccCC-CccccceEC-CCCCEEEEEecCCCCccEEEEC
Confidence 654321110 011122221 2355677655 57889999886
No 187
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=38.08 E-value=1.1e+02 Score=26.04 Aligned_cols=65 Identities=14% Similarity=0.139 Sum_probs=36.7
Q ss_pred CCceEEEEecC-CCe--EEEEeccCcEEEEEecccc---eeeEEEc-CCEEEEEEecCCCeeEEEEEEeecCceee
Q 020740 203 VNGKVLTYSAQ-DSI--YKVFDLKNYTMLYSISDKN---VQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (322)
Q Consensus 203 vNgkilty~aq-~~~--YrVfdlknYs~LYsIsde~---VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~l~ 271 (322)
.+|+-|+|... ++. ..+||+.+-+.. .+.+.+ +....+| +|-.|++..... -+.++++++|+...
T Consensus 45 pDg~~l~~~~~~~g~~~l~~~d~~~g~~~-~lt~~~~~~~~~~~~spdg~~l~~~~~~~---~l~~~d~~~g~~~~ 116 (388)
T 3pe7_A 45 RDGSKLLFGGAFDGPWNYYLLDLNTQVAT-QLTEGRGDNTFGGFLSPDDDALFYVKDGR---NLMRVDLATLEENV 116 (388)
T ss_dssp TTSCEEEEEECTTSSCEEEEEETTTCEEE-ECCCSSCBCSSSCEECTTSSEEEEEETTT---EEEEEETTTCCEEE
T ss_pred CCCCEEEEEEcCCCCceEEEEeCCCCceE-EeeeCCCCCccceEEcCCCCEEEEEeCCC---eEEEEECCCCccee
Confidence 35766666665 664 556688776643 333222 2245677 454444443322 46678888888764
No 188
>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A
Probab=37.99 E-value=12 Score=33.72 Aligned_cols=76 Identities=29% Similarity=0.459 Sum_probs=55.9
Q ss_pred cCcEEEEEecccceee--EEEcCCEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCCcchh---------------
Q 020740 223 KNYTMLYSISDKNVQE--IKISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNKKVDF--------------- 285 (322)
Q Consensus 223 knYs~LYsIsde~VqE--IkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk~iqF--------------- 285 (322)
++-.++..++-+++.+ +.+.+|.++.+ +. -+..|.++.+++++.+|||.|. -+.+.|
T Consensus 83 ~~~~lv~~vp~~~f~~~~~~~~vG~~~~~-~~----~~g~V~~v~~~~V~vD~NHPLA-Gk~L~F~vev~~v~eat~eei 156 (231)
T 3prb_A 83 RDPSKIKLIPLSEFTKRGIKPIKGLTITI-DG----IPGKIVSINSGRVLVDFNHELA-GKEVKYRIKIEEVVDDKKNIV 156 (231)
T ss_dssp CCGGGEEEEETHHHHTTTCCCCTTCEEEE-TT----EEEEEEEEETTEEEEECSCTTT-TCCEEEEEEEEEECCSHHHHH
T ss_pred CChHHEEecCHHHCCcccCCCCCCcEEEe-cC----CCEEEEEEcCCEEEEeCCCccC-CCEEEEEEEEEEEecCCHHHH
Confidence 3555788888888863 77778988755 22 2689999999999999999998 666655
Q ss_pred ---hhhcc---ceeEEEecCCceeE
Q 020740 286 ---IEQFN---EKLLVKQENENLQI 304 (322)
Q Consensus 286 ---iE~f~---EkLLIKQE~~~LqI 304 (322)
++++- +++-++-+++.+.|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~i 181 (231)
T 3prb_A 157 KEIVKMYVPRLSDVKVTIRNGTVKI 181 (231)
T ss_dssp HHHHHHHCTTCCCCEEEEETTEEEE
T ss_pred HHHHHHhcCCccceEEEEeCCeEEE
Confidence 33332 67777777777665
No 189
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=37.11 E-value=2.5e+02 Score=25.78 Aligned_cols=107 Identities=7% Similarity=0.009 Sum_probs=70.4
Q ss_pred CCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEc-CCEEEEEEecCCCeeEEEEEEeecCceeeeeeeccccCC
Q 020740 203 VNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLHRNK 281 (322)
Q Consensus 203 vNgkilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~~sk 281 (322)
.++++-.-.-+++.--|||.++.+.+=+|+-.. .-.=++ +|-.|..... .+ -+.++|-+|+++++++.--. ..+
T Consensus 104 ~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~-eGwGLt~Dg~~L~vSdG-s~--~l~~iDp~T~~v~~~I~V~~-~g~ 178 (268)
T 3nok_A 104 DGERLYQLTWTEGLLFTWSGMPPQRERTTRYSG-EGWGLCYWNGKLVRSDG-GT--MLTFHEPDGFALVGAVQVKL-RGQ 178 (268)
T ss_dssp CSSCEEEEESSSCEEEEEETTTTEEEEEEECSS-CCCCEEEETTEEEEECS-SS--EEEEECTTTCCEEEEEECEE-TTE
T ss_pred eCCEEEEEEccCCEEEEEECCcCcEEEEEeCCC-ceeEEecCCCEEEEECC-CC--EEEEEcCCCCeEEEEEEeCC-CCc
Confidence 456777777789999999999999888877431 101111 3333444444 33 36789999999999876321 233
Q ss_pred cchh---hhhccceeEEEe-cCCceeEEEccccccee
Q 020740 282 KVDF---IEQFNEKLLVKQ-ENENLQILDVRISLFLP 314 (322)
Q Consensus 282 ~iqF---iE~f~EkLLIKQ-E~~~LqI~Dl~~~~~~~ 314 (322)
++.| ||.-+.+|++-. +...+.++|..+.+++.
T Consensus 179 ~v~~lNeLe~~dG~lyanvw~s~~I~vIDp~TG~V~~ 215 (268)
T 3nok_A 179 PVELINELECANGVIYANIWHSSDVLEIDPATGTVVG 215 (268)
T ss_dssp ECCCEEEEEEETTEEEEEETTCSEEEEECTTTCBEEE
T ss_pred ccccccccEEeCCEEEEEECCCCeEEEEeCCCCcEEE
Confidence 3333 244467899988 46678899998877654
No 190
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=36.98 E-value=1.5e+02 Score=28.04 Aligned_cols=127 Identities=11% Similarity=0.100 Sum_probs=71.1
Q ss_pred eehhhhHhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEeccc-----ceeeEEEc-C
Q 020740 170 TRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDK-----NVQEIKIS-P 243 (322)
Q Consensus 170 ~~~e~i~~gk~~~g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde-----~VqEIkIS-~ 243 (322)
+++++|-.++..... . .| .|- .+|+++ |...++..++||+.+-+..--+... .+..+.+| |
T Consensus 4 ~~~~~~~~~~~~~~~-----~---~~---~~s-~dg~~~-~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpD 70 (719)
T 1z68_A 4 LTLKDILNGTFSYKT-----F---FP---NWI-SGQEYL-HQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPD 70 (719)
T ss_dssp CCHHHHHHTTTCCCC-----C---CC---EES-SSSEEE-EECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTT
T ss_pred ccHHHHhcCcccCCC-----C---cc---EEC-CCCeEE-EEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCC
Confidence 567788777642211 1 12 222 234544 4456899999999998866555433 27899999 5
Q ss_pred CEEEEEEecCC------CeeEEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEEcccccc
Q 020740 244 GIMLLIFTKAS------GHVPLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISLF 312 (322)
Q Consensus 244 Gimll~~q~~~------~~iPlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~ 312 (322)
|-.|++..... ..--+.|.++++|+.+..... -..-..+.| =.=+.+|..-. +.+|.+||+.+.+.
T Consensus 71 g~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-~~~~~~~~~-SPDG~~la~~~-~~~i~~~~~~~g~~ 142 (719)
T 1z68_A 71 RQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-PRPIQYLCW-SPVGSKLAYVY-QNNIYLKQRPGDPP 142 (719)
T ss_dssp SSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-CSSBCCEEE-CSSTTCEEEEE-TTEEEEESSTTSCC
T ss_pred CCeEEEEecCceeEEeecceEEEEEECCCCccccceec-CcccccceE-CCCCCEEEEEE-CCeEEEEeCCCCCc
Confidence 66555543311 124688999999987321111 000001111 01134454443 56899999977654
No 191
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=35.45 E-value=1.4e+02 Score=28.00 Aligned_cols=58 Identities=14% Similarity=0.144 Sum_probs=40.5
Q ss_pred eEEEEeccCcEEEEEec--------ccceeeEEEc-CCEEEEE-EecCCCeeEEEEEEeecCceeeee
Q 020740 216 IYKVFDLKNYTMLYSIS--------DKNVQEIKIS-PGIMLLI-FTKASGHVPLKILSIEDGTVLKSF 273 (322)
Q Consensus 216 ~YrVfdlknYs~LYsIs--------de~VqEIkIS-~Gimll~-~q~~~~~iPlkIlsIedG~~l~~f 273 (322)
..++||+.+=+....+. +..+..+..| ||-+|+. .....+..-+.++++.+|+...-+
T Consensus 229 ~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~ 296 (723)
T 1xfd_A 229 SLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKH 296 (723)
T ss_dssp EEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEE
T ss_pred EEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEE
Confidence 67889988877555665 3457778888 4655433 345556677889999999876543
No 192
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=33.60 E-value=1.3e+02 Score=24.60 Aligned_cols=50 Identities=12% Similarity=0.266 Sum_probs=32.7
Q ss_pred ceEEEEecCCC-----eEEEEeccC--cEEEEEecccceeeEEEcCCEEEEEEecCC
Q 020740 205 GKVLTYSAQDS-----IYKVFDLKN--YTMLYSISDKNVQEIKISPGIMLLIFTKAS 254 (322)
Q Consensus 205 gkilty~aq~~-----~YrVfdlkn--Ys~LYsIsde~VqEIkIS~Gimll~~q~~~ 254 (322)
.+|++++++.. ...|++-.. -..+|.|.-++=++++++|.|.+++.+...
T Consensus 25 D~Vla~d~~G~~~~s~V~~~~~r~~~~~~~f~~I~t~~g~~L~lTp~H~i~v~~~~~ 81 (145)
T 1at0_A 25 DRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHTDGGAVLTVTPAHLVSVWQPES 81 (145)
T ss_dssp CEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEEEEETTSCEEEECTTCEEEEEETTT
T ss_pred CEEEEECCCCCEEEEEEEEEEeeCCCcceeEEEEEECCCCEEEEeCCCEEEEecCCC
Confidence 35666665432 245555332 236778876655899999999988887754
No 193
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=32.61 E-value=2.7e+02 Score=24.90 Aligned_cols=109 Identities=9% Similarity=0.012 Sum_probs=73.2
Q ss_pred EEecCCCceEEEEecC--CCeEEEEeccCcEEEEEec--cc-ceeeEEEcCCEEEEEEecCCCeeEEEEEEeecCceeee
Q 020740 198 VEFDDVNGKVLTYSAQ--DSIYKVFDLKNYTMLYSIS--DK-NVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLKS 272 (322)
Q Consensus 198 VEFDdvNgkilty~aq--~~~YrVfdlknYs~LYsIs--de-~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~ 272 (322)
++||+- |++..-+.+ ++..+++|+++-+.+=++. +. ...-|-+.++.+ .......+. +.++|..|++.++.
T Consensus 26 l~~~~d-g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~l-yv~t~~~~~--v~viD~~t~~v~~~ 101 (266)
T 2iwa_A 26 LVYAEN-DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKL-YQVVWLKNI--GFIYDRRTLSNIKN 101 (266)
T ss_dssp EEECST-TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEE-EEEETTCSE--EEEEETTTTEEEEE
T ss_pred EEEeCC-CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEE-EEEEecCCE--EEEEECCCCcEEEE
Confidence 678754 666655544 6899999999999887765 22 333466777654 333444455 56699999999998
Q ss_pred eeeccccCCcchhhhhccceeEEEecCCceeEEEcccccce
Q 020740 273 FNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 273 f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
+..- .....- +-.=+..|++-.....|.++|..+.+++
T Consensus 102 i~~g--~~~g~g-lt~Dg~~l~vs~gs~~l~viD~~t~~v~ 139 (266)
T 2iwa_A 102 FTHQ--MKDGWG-LATDGKILYGSDGTSILYEIDPHTFKLI 139 (266)
T ss_dssp EECC--SSSCCE-EEECSSSEEEECSSSEEEEECTTTCCEE
T ss_pred EECC--CCCeEE-EEECCCEEEEECCCCeEEEEECCCCcEE
Confidence 8642 111221 3333678998888888999999886654
No 194
>1dq3_A Endonuclease; PI-PFUI, intein-encoded, hydrolase; 2.10A {Pyrococcus furiosus} SCOP: b.86.1.2 d.50.3.1 d.95.2.2 d.95.2.2
Probab=28.23 E-value=1e+02 Score=29.38 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=48.2
Q ss_pred CCCceEEEEecCCCeE------EEEeccCcE--EEEEecccceeeEEEcCCEEEEEEecCCCeeEEEEEEeecCceee
Q 020740 202 DVNGKVLTYSAQDSIY------KVFDLKNYT--MLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (322)
Q Consensus 202 dvNgkilty~aq~~~Y------rVfdlknYs--~LYsIsde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~ 271 (322)
+.++.+.+.++..+.+ .||..+... .+|.|.-++=.+|+++|.|-+++..+.........-++..|..+.
T Consensus 48 ~~~~~V~s~d~d~~k~i~~kv~~v~~~~~~~~~~~~~i~t~~G~~i~~T~~H~~~~~~~~g~~~~~~a~~l~~gd~i~ 125 (454)
T 1dq3_A 48 NVPIYVKSFDPESKRVVKGKVNVIWKYELGKDVTKYEIITNKGTKILTSPWHPFFVLTPDFKIVEKRADELKEGDILI 125 (454)
T ss_dssp TSCCEEEEEETTTTEEEEEEEEEEEEEEECTTSCEEEEEETTCCEEEECTTCEEEEECTTSCEEEEETTTCCTTCEEC
T ss_pred CCcEEEEEEcCCCCEEEEeEeeEEEEcccCCCCeEEEEEECCceEEEEcCCCeEEEEeCCCcEEEEEhhhCCCCCEEE
Confidence 4456677777655544 589876665 599999888889999999998888764444444444555555544
No 195
>4e2u_A PHO RADA intein; HINT-fold, unknown function; 1.58A {Pyrococcus horikoshii} PDB: 2lqm_A 4e2t_A*
Probab=26.54 E-value=1.6e+02 Score=24.36 Aligned_cols=46 Identities=20% Similarity=0.205 Sum_probs=34.3
Q ss_pred ceEEEEecCCCeE------EEEeccCcEEEEEecccceeeEEEcCCEEEEEEe
Q 020740 205 GKVLTYSAQDSIY------KVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFT 251 (322)
Q Consensus 205 gkilty~aq~~~Y------rVfdlknYs~LYsIsde~VqEIkIS~Gimll~~q 251 (322)
-+|+++++.++.. .||.-+. ..+|.|.-++=.+|++++.|-++...
T Consensus 52 ~~V~s~d~~~g~~~~~~v~~~~~~~~-~~~~~i~t~~G~~i~~T~~Hp~~~~~ 103 (168)
T 4e2u_A 52 VFVYTLDIASGEIKKTRASYIYREKV-EKLIEIKLSSGYSLKVTPSHPVLLFR 103 (168)
T ss_dssp EEEEEECTTTCCEEEEECCEEEEEEE-EEEEEEEETTSCEEEECTTCEEEEES
T ss_pred eEEEEEeCCCCCEEEEEEeEEEEcCC-CeEEEEEECCCCEEEECCCCcEEEEc
Confidence 6899998766533 5777554 58888886666789999988877754
No 196
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=25.67 E-value=3.2e+02 Score=23.55 Aligned_cols=59 Identities=10% Similarity=0.086 Sum_probs=40.9
Q ss_pred cCCCCeEEecCCCceEEEEecCCCeEEEEeccC--cEEEEEec-ccceeeEEEc-CCEEEEEEe
Q 020740 192 LKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKN--YTMLYSIS-DKNVQEIKIS-PGIMLLIFT 251 (322)
Q Consensus 192 L~~PgFVEFDdvNgkilty~aq~~~YrVfdlkn--Ys~LYsIs-de~VqEIkIS-~Gimll~~q 251 (322)
..+|+=+.+|. +|.+...+..++...+||.++ +..+...+ -.....+.++ +|.+++.-.
T Consensus 247 ~g~pdgia~d~-~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~ 309 (343)
T 2qe8_A 247 KPICDGISIDK-DHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCN 309 (343)
T ss_dssp CCSCSCEEECT-TCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEEC
T ss_pred CCCCceEEECC-CCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeC
Confidence 34798899997 589999999999999999833 33444433 2346677775 565554443
No 197
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=25.56 E-value=2.4e+02 Score=26.54 Aligned_cols=104 Identities=17% Similarity=0.174 Sum_probs=60.4
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCcE-------------EEEEecccceeeEEEcCCEEEEEEecCCCeeEEEEEEe
Q 020740 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYT-------------MLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSI 264 (322)
Q Consensus 198 VEFDdvNgkilty~aq~~~YrVfdlknYs-------------~LYsIsde~VqEIkIS~Gimll~~q~~~~~iPlkIlsI 264 (322)
......-|.+.+..+ ...+||++++-. .+..++. |..+-+ +|-.|++- ..+ -++++++
T Consensus 43 Lais~~~gll~a~~~--~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~--V~~l~f-d~~~L~v~--~~~--~l~v~dv 113 (388)
T 1xip_A 43 LDISNSKSLFVAASG--SKAVVGELQLLRDHITSDSTPLTFKWEKEIPD--VIFVCF-HGDQVLVS--TRN--ALYSLDL 113 (388)
T ss_dssp EEEETTTTEEEEEET--TEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT--EEEEEE-ETTEEEEE--ESS--EEEEEES
T ss_pred EEEcCCCCEEEEeCC--CEEEEEEhhHhhhhhccccccccceEEeeCCC--eeEEEE-CCCEEEEE--cCC--cEEEEEc
Confidence 444455566555444 478889987544 5667665 888888 77666666 223 3778887
Q ss_pred ecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEEcccccce
Q 020740 265 EDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 265 edG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
.+-.........-.+-..+.+ .+..+++=-.+..|.+||+.+....
T Consensus 114 ~sl~~~~~~~~~~~~v~~i~~---~~p~~av~~~dG~L~v~dl~~~~~~ 159 (388)
T 1xip_A 114 EELSEFRTVTSFEKPVFQLKN---VNNTLVILNSVNDLSALDLRTKSTK 159 (388)
T ss_dssp SSTTCEEEEEECSSCEEEEEE---CSSEEEEEETTSEEEEEETTTCCEE
T ss_pred hhhhccCccceeecceeeEEe---cCCCEEEEECCCCEEEEEccCCccc
Confidence 644422222100000111111 1223676678899999999876654
No 198
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=24.98 E-value=3e+02 Score=22.99 Aligned_cols=77 Identities=12% Similarity=0.120 Sum_probs=39.5
Q ss_pred EEecCCCceEEEEec----------------CCCeEEEEeccCcE--EEEEeccc----------ceeeEEEc-CCEEEE
Q 020740 198 VEFDDVNGKVLTYSA----------------QDSIYKVFDLKNYT--MLYSISDK----------NVQEIKIS-PGIMLL 248 (322)
Q Consensus 198 VEFDdvNgkilty~a----------------q~~~YrVfdlknYs--~LYsIsde----------~VqEIkIS-~Gimll 248 (322)
+.|...+|+.+++.. .+....+||+.+-+ .|..-... .+....++ +|-.|+
T Consensus 287 ~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 366 (396)
T 3c5m_A 287 HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVL 366 (396)
T ss_dssp EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEE
T ss_pred CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEE
Confidence 456554667776643 24678888987654 22221110 13445666 454444
Q ss_pred EEecCCCeeEEEEEEeecCceeeeee
Q 020740 249 IFTKASGHVPLKILSIEDGTVLKSFN 274 (322)
Q Consensus 249 ~~q~~~~~iPlkIlsIedG~~l~~f~ 274 (322)
+.....+...+-++++.+|+....+.
T Consensus 367 ~~s~~~~~~~l~~~~~~~~~~~~~~~ 392 (396)
T 3c5m_A 367 FTSDFEGVPAIYIADVPESYKHLEHH 392 (396)
T ss_dssp EEECTTSSCEEEEEECCTTCC-----
T ss_pred EEecCCCCceEEEEEEcccccccccc
Confidence 44444455556667777777665444
No 199
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=24.65 E-value=1.5e+02 Score=28.92 Aligned_cols=89 Identities=12% Similarity=0.166 Sum_probs=0.0
Q ss_pred eeeehhhhHhCCCCCCCcceeecccCCCCeEEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEE------
Q 020740 168 RSTRIEYIRRGKPDAGFALFESESLKWPGFVEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKI------ 241 (322)
Q Consensus 168 r~~~~e~i~~gk~~~g~~LFe~~~L~~PgFVEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkI------ 241 (322)
+.++.+++..|.... ....+.|- .+|+.++.+ ++..++||+++=++.--++........+
T Consensus 3 ~~~tl~~~~~~~~~~-----~~~~~~w~-------~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (740)
T 4a5s_A 3 KTYTLTDYLKNTYRL-----KLYSLRWI-------SDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYS 68 (740)
T ss_dssp EECCHHHHHHTCSCC-----CCCCEEEC-------SSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEE
T ss_pred CceeHHHHhcCcccc-----cccccEEC-------CCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceE
Q ss_pred -c-CCEEEEEEecCCCe------eEEEEEEeecCcee
Q 020740 242 -S-PGIMLLIFTKASGH------VPLKILSIEDGTVL 270 (322)
Q Consensus 242 -S-~Gimll~~q~~~~~------iPlkIlsIedG~~l 270 (322)
| ||-.|++......+ =-+.|+++++|+..
T Consensus 69 ~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~ 105 (740)
T 4a5s_A 69 ISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLI 105 (740)
T ss_dssp ECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEEC
T ss_pred ECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEE
No 200
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=23.33 E-value=5.5e+02 Score=25.33 Aligned_cols=54 Identities=11% Similarity=-0.013 Sum_probs=36.4
Q ss_pred EEEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecCCceeEEEcccccce
Q 020740 258 PLKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQENENLQILDVRISLFL 313 (322)
Q Consensus 258 PlkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~~~LqI~Dl~~~~~~ 313 (322)
-|..+|+.||+++-.+.+-.+... .- +-.-++.+++=-.+..|.+||+.+.+.+
T Consensus 458 ~l~A~D~~tG~~~W~~~~~~~~~~-g~-~~~~g~~v~~g~~dg~l~a~D~~tG~~l 511 (677)
T 1kb0_A 458 RLLAWDPVAQKAAWSVEHVSPWNG-GT-LTTAGNVVFQGTADGRLVAYHAATGEKL 511 (677)
T ss_dssp EEEEEETTTTEEEEEEEESSSCCC-CE-EEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEEEeCCCCcEEeecCCCCCCcC-cc-eEeCCCEEEEECCCCcEEEEECCCCcee
Confidence 377889999999888765322111 11 1123566777777899999999987764
No 201
>2z14_A EF-hand domain-containing family member C2; DUF1126, human EF-hand domain, alternative splicing, polymorphism, signaling protein; 1.68A {Homo sapiens} PDB: 2z13_A
Probab=23.17 E-value=44 Score=27.86 Aligned_cols=45 Identities=27% Similarity=0.561 Sum_probs=28.5
Q ss_pred CCCeEEecCCCceEEEEecC------CCeEEEEeccCcEEEEEeccccee--eEEE
Q 020740 194 WPGFVEFDDVNGKVLTYSAQ------DSIYKVFDLKNYTMLYSISDKNVQ--EIKI 241 (322)
Q Consensus 194 ~PgFVEFDdvNgkilty~aq------~~~YrVfdlknYs~LYsIsde~Vq--EIkI 241 (322)
-|.|++||. +||.+.|- ++.=..|..+-|...|=++|..|+ |.+.
T Consensus 5 ~p~~~~~D~---~vLrF~a~~~d~~~e~~~e~~~~R~~~I~YyL~DdTieI~E~~~ 57 (133)
T 2z14_A 5 SSGWVAFDK---QVLSFDAYLEEEVLDKSQTNYRIRYYKIYFYPEDDTIQVNEPEV 57 (133)
T ss_dssp -CCCCCCCS---CCEEEEEEEEEEEEETTEEEEEEEEEEEEEETTTTEEEEECCC-
T ss_pred ccchhhcCC---eEEEEEEEEeCCCcccccccceEEEEEEEEEcCCCcEEEEecCc
Confidence 389999994 57777654 222234566778888888876543 4444
No 202
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=23.17 E-value=49 Score=29.65 Aligned_cols=94 Identities=10% Similarity=0.135 Sum_probs=38.3
Q ss_pred CCCeEEEEeccCcEEEEEecccceeeE-EEcCCEEEEEEecCCCeeEEEEEEeecCceeeeeeeccc---cCCcchhhhh
Q 020740 213 QDSIYKVFDLKNYTMLYSISDKNVQEI-KISPGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH---RNKKVDFIEQ 288 (322)
Q Consensus 213 q~~~YrVfdlknYs~LYsIsde~VqEI-kIS~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~---~sk~iqFiE~ 288 (322)
.++....||.++=+.+.+.....+... -+.+|.+++. ....+. +..++.+||+.+.......+ ...++- .
T Consensus 17 ~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~~~v~-~s~dg~--l~a~d~~tG~~~w~~~~~~~~~~~~sp~~---~ 90 (369)
T 2hz6_A 17 LDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLP-DPNDGS--LYTLGSKNNEGLTKLPFTIPELVQASPCR---S 90 (369)
T ss_dssp TTSEEEEEETTTCCEEEEEECCCSCCCC-----CCEEE-CTTTCC--EEEC-----CCSEECSCCHHHHHTTCSCC----
T ss_pred CCCEEEEEECCCCCEEEEecCCCceecceEcCCCEEEE-eCCCCE--EEEEECCCCceeeeeeccCccccccCceE---e
Confidence 344555555555555555443222211 1234433222 222333 56789999998766543211 122211 1
Q ss_pred ccceeEEEecCCceeEEEcccccc
Q 020740 289 FNEKLLVKQENENLQILDVRISLF 312 (322)
Q Consensus 289 f~EkLLIKQE~~~LqI~Dl~~~~~ 312 (322)
-+..+++=-.+..|.+||..+-+.
T Consensus 91 ~~~~v~~g~~dg~v~a~D~~tG~~ 114 (369)
T 2hz6_A 91 SDGILYMGKKQDIWYVIDLLTGEK 114 (369)
T ss_dssp ----CCCCEEEEEEEEECCC----
T ss_pred cCCEEEEEeCCCEEEEEECCCCcE
Confidence 255677766777899999887654
No 203
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=23.01 E-value=4.5e+02 Score=24.20 Aligned_cols=60 Identities=17% Similarity=0.227 Sum_probs=39.7
Q ss_pred ecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEcCCEEEEEEecCCCeeEEEEEEee
Q 020740 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIE 265 (322)
Q Consensus 200 FDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIe 265 (322)
|+. +|+++.....++..++|++ + +.+- .....+..+.+|+|-+++...... -|-.|..+.
T Consensus 253 ~sp-dg~~~~~~~~~g~~~l~~~-g-~~~~-~~~~~v~~~~~sdg~~l~~~s~~~--~p~~l~~~d 312 (582)
T 3o4h_A 253 YLP-DGRLAVVARREGRSAVFID-G-ERVE-APQGNHGRVVLWRGKLVTSHTSLS--TPPRIVSLP 312 (582)
T ss_dssp ECT-TSCEEEEEEETTEEEEEET-T-EEEC-CCSSEEEEEEEETTEEEEEEEETT--EEEEEEEET
T ss_pred EcC-CCcEEEEEEcCCcEEEEEE-C-Ceec-cCCCceEEEEecCCEEEEEEcCCC--CCCeEEEEc
Confidence 664 4488777778999999999 2 2222 344677888889998876655443 344444444
No 204
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A
Probab=22.53 E-value=1.2e+02 Score=25.52 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=48.2
Q ss_pred EEecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEcCCEEEEEEecCCCeeEEEEEEeecCceee
Q 020740 198 VEFDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFTKASGHVPLKILSIEDGTVLK 271 (322)
Q Consensus 198 VEFDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS~Gimll~~q~~~~~iPlkIlsIedG~~l~ 271 (322)
+-||+.+|++.... .-+||..+....+|.|.=++=.+|+++|.+-+++... ........-++.-|..+.
T Consensus 60 ~s~~~~~gk~~~~~----v~~v~~~~~~~~~~~I~t~~G~~i~~T~~Hp~~v~~~-g~~~w~~A~eLk~GD~v~ 128 (186)
T 2jmz_A 60 KSFNKLSLIIEDKR----ILRVWRKKYSGKLIKITTKNRREITLTHDHPVYISKT-GEVLEINAEMVKVGDYIY 128 (186)
T ss_dssp ECCBTTTTBCCEEE----CCEEEEECCCEEEECCCCTTSCCCCBCTTCEEEEEET-TEEEEEEGGGCCTTSEEE
T ss_pred EEEECCCCCEEEEE----eEEEEEcCCCCcEEEEEECCCCEEEEeCCCEEEEeCC-CeEEEEEhhcCCCCCEEE
Confidence 34677777765532 4689999878999999888889999999999888765 233344444445555544
No 205
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=22.10 E-value=5.8e+02 Score=25.20 Aligned_cols=124 Identities=13% Similarity=0.235 Sum_probs=0.0
Q ss_pred cchhhhhhccccceeeecccccEEEEecCCCCceEEEEe---------------eecCCCeEEEEEeEecCCCceeeeee
Q 020740 105 RDIVFALAQSGVCAAFCRETNQRICFLNVTADEVIRSLF---------------YNKNNDSLITVSVYASDNFSSLRCRS 169 (322)
Q Consensus 105 ~diI~aL~~sG~c~af~r~tn~~iC~lN~s~dEvIrSiF---------------yNk~NdSlItvSvy~sd~fS~LkCr~ 169 (322)
.++|++....|.-.++|+.||+.+--....+..-...+= |-....+++.
T Consensus 319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~---------------- 382 (689)
T 1yiq_A 319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVT---------------- 382 (689)
T ss_dssp EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEES----------------
T ss_pred EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeC----------------
Q ss_pred eehhhhHhCCCCCCCcceeecccCCCCe--------EEecCCCceEEEEecC----------------------------
Q 020740 170 TRIEYIRRGKPDAGFALFESESLKWPGF--------VEFDDVNGKVLTYSAQ---------------------------- 213 (322)
Q Consensus 170 ~~~e~i~~gk~~~g~~LFe~~~L~~PgF--------VEFDdvNgkilty~aq---------------------------- 213 (322)
||+ +-||..+|.+.+-..+
T Consensus 383 -------------------------p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 437 (689)
T 1yiq_A 383 -------------------------PAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTG 437 (689)
T ss_dssp -------------------------SCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEEC
T ss_pred -------------------------CCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcccc
Q ss_pred ----------------CCeEEEEeccCcEEEEEecccceeeEEEcCCEEE----EEEecCCCeeEEEEEEeecCceeeee
Q 020740 214 ----------------DSIYKVFDLKNYTMLYSISDKNVQEIKISPGIML----LIFTKASGHVPLKILSIEDGTVLKSF 273 (322)
Q Consensus 214 ----------------~~~YrVfdlknYs~LYsIsde~VqEIkIS~Giml----l~~q~~~~~iPlkIlsIedG~~l~~f 273 (322)
++..+.||+++=+.+.++.... ..-.|.+. +++..+.+-. ++.+|.+||++|-++
T Consensus 438 ~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~----~~~~g~~~tagglvf~gt~dg~-l~a~D~~tG~~lw~~ 512 (689)
T 1yiq_A 438 MMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVT----IFNGGTLSTAGNLVFEGSADGR-VIAYAADTGEKLWEQ 512 (689)
T ss_dssp CCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESS----SCCCCEEEETTTEEEEECTTSE-EEEEETTTCCEEEEE
T ss_pred ccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCC----CccCccceECCCEEEEECCCCc-EEEEECCCCccceee
Q ss_pred e
Q 020740 274 N 274 (322)
Q Consensus 274 ~ 274 (322)
.
T Consensus 513 ~ 513 (689)
T 1yiq_A 513 P 513 (689)
T ss_dssp E
T ss_pred e
No 206
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=21.72 E-value=3.6e+02 Score=22.68 Aligned_cols=109 Identities=10% Similarity=0.045 Sum_probs=61.2
Q ss_pred CCceEEEEecCCCeEEEEeccCcE--EEEEecccceeeEEE---cCCEEEEEEec-------------------CCCeeE
Q 020740 203 VNGKVLTYSAQDSIYKVFDLKNYT--MLYSISDKNVQEIKI---SPGIMLLIFTK-------------------ASGHVP 258 (322)
Q Consensus 203 vNgkilty~aq~~~YrVfdlknYs--~LYsIsde~VqEIkI---S~Gimll~~q~-------------------~~~~iP 258 (322)
.+|+-|+|...+....+||+.+-+ .++......+..... .+|..++.... ....--
T Consensus 90 pdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (388)
T 3pe7_A 90 PDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCR 169 (388)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcce
Confidence 467888888888899999999865 567766554433322 25555443321 122355
Q ss_pred EEEEEeecCceeeeeeeccccCCcchhhhhccceeEEEecC------CceeEEEcccccc
Q 020740 259 LKILSIEDGTVLKSFNHLLHRNKKVDFIEQFNEKLLVKQEN------ENLQILDVRISLF 312 (322)
Q Consensus 259 lkIlsIedG~~l~~f~~~L~~sk~iqFiE~f~EkLLIKQE~------~~LqI~Dl~~~~~ 312 (322)
+.++++.+|+...-+... ..-..+.|--.=+.+|+.-.++ ..|.++|+...+.
T Consensus 170 l~~~d~~~g~~~~l~~~~-~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~ 228 (388)
T 3pe7_A 170 LMRVDLKTGESTVILQEN-QWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM 228 (388)
T ss_dssp EEEEETTTCCEEEEEEES-SCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC
T ss_pred EEEEECCCCceEEeecCC-ccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce
Confidence 778899999765433211 0011222211134556554443 3677777765543
No 207
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=21.44 E-value=82 Score=29.88 Aligned_cols=69 Identities=13% Similarity=0.229 Sum_probs=44.8
Q ss_pred eEEecCCCceEEEEecC---------CCeEEEEeccCcEEE--EEecccceeeEEEcC-CEEEEEEecCCCeeEEEEEEe
Q 020740 197 FVEFDDVNGKVLTYSAQ---------DSIYKVFDLKNYTML--YSISDKNVQEIKISP-GIMLLIFTKASGHVPLKILSI 264 (322)
Q Consensus 197 FVEFDdvNgkilty~aq---------~~~YrVfdlknYs~L--YsIsde~VqEIkIS~-Gimll~~q~~~~~iPlkIlsI 264 (322)
-+.|.. +|+-|++... ++.+++||+.+=+.+ ..+. ..+..+.+|| |-.|++-. .+ -+.+.++
T Consensus 64 ~~~~Sp-Dg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~-~~~~~~~~SPDG~~la~~~--~~--~i~~~~~ 137 (719)
T 1z68_A 64 NYGLSP-DRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP-RPIQYLCWSPVGSKLAYVY--QN--NIYLKQR 137 (719)
T ss_dssp EEEECT-TSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC-SSBCCEEECSSTTCEEEEE--TT--EEEEESS
T ss_pred eEEECC-CCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC-cccccceECCCCCEEEEEE--CC--eEEEEeC
Confidence 344443 6776666554 689999999887653 3444 5688899995 54444332 22 4777888
Q ss_pred ecCceee
Q 020740 265 EDGTVLK 271 (322)
Q Consensus 265 edG~~l~ 271 (322)
.+|+...
T Consensus 138 ~~g~~~~ 144 (719)
T 1z68_A 138 PGDPPFQ 144 (719)
T ss_dssp TTSCCEE
T ss_pred CCCCcEE
Confidence 8887643
No 208
>1mi8_A DNAB intein; all beta-strands, hydrolase; 2.00A {Synechocystis SP} SCOP: b.86.1.2
Probab=20.96 E-value=2.4e+02 Score=22.65 Aligned_cols=34 Identities=18% Similarity=0.287 Sum_probs=27.6
Q ss_pred EEEEeccCcEEEEEecccceeeEEEcCCEEEEEEe
Q 020740 217 YKVFDLKNYTMLYSISDKNVQEIKISPGIMLLIFT 251 (322)
Q Consensus 217 YrVfdlknYs~LYsIsde~VqEIkIS~Gimll~~q 251 (322)
-.||+ ..+..+|.|.-++=.+|+.++.|.+++..
T Consensus 48 ~~~~~-~~~~~~~~i~t~~G~~i~~T~~H~~~t~~ 81 (158)
T 1mi8_A 48 SRVFM-TGKKLVYILKTRLGRTIKATANHRFLTID 81 (158)
T ss_dssp CEEEE-EEEEEEEEEEETTCCEEEECTTCEEEETT
T ss_pred eeeee-cCCceEEEEEECCCCEEEEeCCceEEecc
Confidence 36776 57889999987777899999999988754
No 209
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=20.72 E-value=4.5e+02 Score=23.44 Aligned_cols=111 Identities=12% Similarity=0.118 Sum_probs=72.4
Q ss_pred ecCCCceEEEEecCCCeEEEEeccCcEEEEEecccceeeEEEc-CCEEEEEEecCCCeeEEEEEEeecCceeeeeeeccc
Q 020740 200 FDDVNGKVLTYSAQDSIYKVFDLKNYTMLYSISDKNVQEIKIS-PGIMLLIFTKASGHVPLKILSIEDGTVLKSFNHLLH 278 (322)
Q Consensus 200 FDdvNgkilty~aq~~~YrVfdlknYs~LYsIsde~VqEIkIS-~Gimll~~q~~~~~iPlkIlsIedG~~l~~f~~~L~ 278 (322)
+.-.++++-.-.-.++.--|+|.++.+.+-+|+-..=.-+-++ +|--|.+.+. .+ -+.++|.+|.++++.+.--..
T Consensus 71 i~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~g-s~--~l~viD~~t~~v~~~I~Vg~~ 147 (266)
T 2iwa_A 71 LTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDG-TS--ILYEIDPHTFKLIKKHNVKYN 147 (266)
T ss_dssp EEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECS-SS--EEEEECTTTCCEEEEEECEET
T ss_pred EEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECC-CC--eEEEEECCCCcEEEEEEECCC
Confidence 3333568877778899999999999999988863301123344 4444455564 34 468899999999987762111
Q ss_pred cCCcc---hhhhhccceeEEEec-CCceeEEEccccccee
Q 020740 279 RNKKV---DFIEQFNEKLLVKQE-NENLQILDVRISLFLP 314 (322)
Q Consensus 279 ~sk~i---qFiE~f~EkLLIKQE-~~~LqI~Dl~~~~~~~ 314 (322)
.+++ .-+|..+.+|++--. ...+.++|..+.+.+.
T Consensus 148 -~~p~~~~nele~~dg~lyvn~~~~~~V~vID~~tg~V~~ 186 (266)
T 2iwa_A 148 -GHRVIRLNELEYINGEVWANIWQTDCIARISAKDGTLLG 186 (266)
T ss_dssp -TEECCCEEEEEEETTEEEEEETTSSEEEEEETTTCCEEE
T ss_pred -CcccccceeEEEECCEEEEecCCCCeEEEEECCCCcEEE
Confidence 1121 123333668998874 5789999998877643
Done!