BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020741
(322 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1A88|A Chain A, Chloroperoxidase L
pdb|1A88|B Chain B, Chloroperoxidase L
pdb|1A88|C Chain C, Chloroperoxidase L
Length = 275
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 60 PLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTHAGDVA 119
P+VF HG +A W L FF G+ A G G SD P + + T+A DVA
Sbjct: 23 PVVFHHGWPLSADDWDNQML-FFLSHGYRVIAHDRRGHGRSDQP--STGHDMDTYAADVA 79
Query: 120 DFIQKNLSLPPVLLGHSFGGLIIQYYIARIRNEKMLEMETPYPEIAGAVLVCSVPP 175
+ V +GHS GG + Y+AR + +A AVLV +VPP
Sbjct: 80 ALTEALDLRGAVHIGHSTGGGEVARYVARAEPGR----------VAKAVLVSAVPP 125
>pdb|1CQZ|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CQZ|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase.
pdb|1CR6|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1CR6|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cpu Inhibitor
pdb|1EK1|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK1|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Ciu Inhibitor
pdb|1EK2|A Chain A, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
pdb|1EK2|B Chain B, Crystal Structure Of Murine Soluble Epoxide Hydrolase
Complexed With Cdu Inhibitor
Length = 554
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 82/177 (46%), Gaps = 26/177 (14%)
Query: 59 PPLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTHAGDV 118
P L HG + +W + +P A +GF A+ + G G+S +PP +++ ++
Sbjct: 257 PALCLCHG-FPESWFSWRYQIPALAQAGFRVLAIDMKGYGDSSSPPEIEEYAMELLCKEM 315
Query: 119 ADFIQKNLSLP-PVLLGHSFGGLIIQ----YYIARIRNEKMLEMETPY----PEIAGAVL 169
F+ K L +P V +GH + G+++ +Y R+R + + TP+ P+++ +
Sbjct: 316 VTFLDK-LGIPQAVFIGHDWAGVMVWNMALFYPERVR--AVASLNTPFMPPDPDVSPMKV 372
Query: 170 VCSVPPSGNSGLVWRYLFTKPIAAFKVTRSLAAKAFQTDLSLCKETFFSSSMEDHLV 226
+ S+P ++ F +P +A + ++S ++FF +S E +
Sbjct: 373 IRSIP-----VFNYQLYFQEP--------GVAEAELEKNMSRTFKSFFRASDETGFI 416
>pdb|1S8O|A Chain A, Human Soluble Epoxide Hydrolase
pdb|1VJ5|A Chain A, Human Soluble Epoxide Hydrolase- N-Cyclohexyl-N'-(4-
Iodophenyl)urea Complex
pdb|1ZD2|P Chain P, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Ethanoic Acid Complex
pdb|1ZD3|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Butyric Acid Complex
pdb|1ZD4|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Hexanoic Acid Complex
pdb|1ZD5|A Chain A, Human Soluble Epoxide Hydrolase 4-(3-Cyclohexyluriedo)-
Heptanoic Acid Complex
pdb|3I1Y|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3I28|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3KOO|A Chain A, Crystal Structure Of Soluble Epoxide Hydrolase
pdb|3OTQ|A Chain A, Soluble Epoxide Hydrolase In Complex With Pyrazole
Antagonist
pdb|4HAI|A Chain A, Crystal Structure Of Human Soluble Epoxide Hydrolase
Complexed With N-
Cycloheptyl-1-(mesitylsulfonyl)piperidine-4-carboxamide
Length = 555
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 59 PPLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTHAGDV 118
P + HG + + W + +P A +G+ A+ + G GES APP ++ ++
Sbjct: 259 PAVCLCHGFPESWYSW-RYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEM 317
Query: 119 ADFIQKNLSLPPVLLGHSFGGLIIQY----YIARIRNEKMLEMETPY 161
F+ K V +GH +GG+++ Y Y R+R + + TP+
Sbjct: 318 VTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVR--AVASLNTPF 362
>pdb|3ANS|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANS|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|A Chain A, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
pdb|3ANT|B Chain B, Human Soluble Epoxide Hydrolase In Complex With A
Synthetic Inhibitor
Length = 336
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 59 PPLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTHAGDV 118
P + HG + + W + +P A +G+ A+ + G GES APP ++ ++
Sbjct: 40 PAVCLCHGFPESWYSW-RYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEM 98
Query: 119 ADFIQKNLSLPPVLLGHSFGGLIIQY----YIARIRNEKMLEMETPY 161
F+ K V +GH +GG+++ Y Y R+R + + TP+
Sbjct: 99 VTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVR--AVASLNTPF 143
>pdb|3PDC|A Chain A, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
pdb|3PDC|B Chain B, Crystal Structure Of Hydrolase Domain Of Human Soluble
Epoxide Hydrolase Complexed With A Benzoxazole Inhibitor
Length = 344
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 59 PPLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTHAGDV 118
P + HG + + W + +P A +G+ A+ + G GES APP ++ ++
Sbjct: 55 PAVCLCHGFPESWYSW-RYQIPALAQAGYRVLAMDMKGYGESSAPPEIEEYCMEVLCKEM 113
Query: 119 ADFIQKNLSLPPVLLGHSFGGLIIQY----YIARIRNEKMLEMETPY 161
F+ K V +GH +GG+++ Y Y R+R + + TP+
Sbjct: 114 VTFLDKLGLSQAVFIGHDWGGMLVWYMALFYPERVR--AVASLNTPF 158
>pdb|3IA2|A Chain A, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|B Chain B, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|C Chain C, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|D Chain D, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|E Chain E, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
pdb|3IA2|F Chain F, Pseudomonas Fluorescens Esterase Complexed To The
R-Enantiomer Of A Sulfonate Transition State Analog
Length = 271
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 15/117 (12%)
Query: 60 PLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTHAGDVA 119
P++F HG A W E+ + + + G+ A G G SD P T A D+A
Sbjct: 21 PVLFSHGWLLDADMW-EYQMEYLSSRGYRTIAFDRRGFGRSDQP--WTGNDYDTFADDIA 77
Query: 120 DFIQKNLSLPPV-LLGHSFGGLIIQYYIARIRNEKMLEMETPYPEIAGAVLVCSVPP 175
I+ +L L V L+G S GG + YIAR + + +AG VL+ +V P
Sbjct: 78 QLIE-HLDLKEVTLVGFSMGGGDVARYIARHGSAR----------VAGLVLLGAVTP 123
>pdb|1VA4|A Chain A, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|B Chain B, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|C Chain C, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|D Chain D, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|E Chain E, Pseudomonas Fluorescens Aryl Esterase
pdb|1VA4|F Chain F, Pseudomonas Fluorescens Aryl Esterase
Length = 279
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 15/117 (12%)
Query: 60 PLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTHAGDVA 119
P++F HG A W E+ + + + G+ A G G SD P T A D+A
Sbjct: 21 PVLFSHGWLLDADMW-EYQMEYLSSRGYRTIAFDRRGFGRSDQP--WTGNDYDTFADDIA 77
Query: 120 DFIQKNLSLPPV-LLGHSFGGLIIQYYIARIRNEKMLEMETPYPEIAGAVLVCSVPP 175
I+ +L L V L+G S GG + YIAR + + +AG VL+ +V P
Sbjct: 78 QLIE-HLDLKEVTLVGFSMGGGDVARYIARHGSAR----------VAGLVLLGAVTP 123
>pdb|3T4U|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T4U|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|A Chain A, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|B Chain B, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|C Chain C, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|D Chain D, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|E Chain E, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
pdb|3T52|F Chain F, L29i Mutation In An Aryl Esterase From Pseudomonas
Fluorescens Leads To Unique Peptide Flip And Increased
Activity
Length = 271
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 15/117 (12%)
Query: 60 PLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTHAGDVA 119
P++F HG A W E+ + + + G+ A G G SD P T A D+A
Sbjct: 21 PVLFSHGWILDADMW-EYQMEYLSSRGYRTIAFDRRGFGRSDQP--WTGNDYDTFADDIA 77
Query: 120 DFIQKNLSLPPV-LLGHSFGGLIIQYYIARIRNEKMLEMETPYPEIAGAVLVCSVPP 175
I+ +L L V L+G S GG + YIAR + + +AG VL+ +V P
Sbjct: 78 QLIE-HLDLKEVTLVGFSMGGGDVARYIARHGSAR----------VAGLVLLGAVTP 123
>pdb|3QIT|A Chain A, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|B Chain B, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|C Chain C, Thioesterase Domain From Curacin Biosynthetic Pathway
pdb|3QIT|D Chain D, Thioesterase Domain From Curacin Biosynthetic Pathway
Length = 286
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 5/109 (4%)
Query: 57 KRPPLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTHAG 116
+ P ++ +HG W E LP A G+ A L G G S + S T
Sbjct: 25 EHPVVLCIHGILEQGLAWQEVALPLAAQ-GYRVVAPDLFGHGRSSHLEMVTSYSSLTFLA 83
Query: 117 DVADFIQKNLSLPPVLLGHSFGGLIIQYYIARIRNEKMLEM---ETPYP 162
+ IQ+ P +L+GHS G ++ IA +R +K+ E+ E P P
Sbjct: 84 QIDRVIQELPDQPLLLVGHSMGAMLA-TAIASVRPKKIKELILVELPLP 131
>pdb|3HI4|A Chain A, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|B Chain B, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|C Chain C, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|D Chain D, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|E Chain E, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
pdb|3HI4|F Chain F, Switching Catalysis From Hydrolysis To Perhydrolysis In P.
Fluorescens Esterase
Length = 271
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 15/117 (12%)
Query: 60 PLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTHAGDVA 119
P++F HG A W E+ + + + G+ A G G SD P T A D+A
Sbjct: 21 PVLFSHGWPLDADMW-EYQMEYLSSRGYRTIAFDRRGFGRSDQP--WTGNDYDTFADDIA 77
Query: 120 DFIQKNLSLPPV-LLGHSFGGLIIQYYIARIRNEKMLEMETPYPEIAGAVLVCSVPP 175
I+ +L L V L+G S GG + YIAR + + +AG VL+ +V P
Sbjct: 78 QLIE-HLDLKEVTLVGFSMGGGDVARYIARHGSAR----------VAGLVLLGAVTP 123
>pdb|3HEA|A Chain A, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|B Chain B, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|C Chain C, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|D Chain D, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|E Chain E, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
pdb|3HEA|F Chain F, The L29pL124I MUTATION OF PSEUDOMONAS FLUORESCENS ESTERASE
Length = 271
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 15/117 (12%)
Query: 60 PLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTHAGDVA 119
P++F HG A W E+ + + + G+ A G G SD P T A D+A
Sbjct: 21 PVLFSHGWPLDADMW-EYQMEYLSSRGYRTIAFDRRGFGRSDQP--WTGNDYDTFADDIA 77
Query: 120 DFIQKNLSLPPV-LLGHSFGGLIIQYYIARIRNEKMLEMETPYPEIAGAVLVCSVPP 175
I+ +L L V L+G S GG + YIAR + + +AG VL+ +V P
Sbjct: 78 QLIE-HLDLKEVTLVGFSMGGGDVARYIARHGSAR----------VAGLVLLGAVTP 123
>pdb|3C5V|A Chain A, Pp2a-Specific Methylesterase Apo Form (Pme)
Length = 316
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Query: 37 NIEVIEQKSVTSKDP---DTKNEKRPPLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVS 93
++E +E ++ T KD + P L+ +HG H+A WA + A+
Sbjct: 14 SMEDVEVENETGKDTFRVYKSGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALD 73
Query: 94 LLGQGESDA--PPGTVAGSLQTHAGDVADFIQKNLSLPPVLLGHSFGGLI 141
L GE+ P A ++ G+V + + +L P +L+GHS GG I
Sbjct: 74 LRSHGETKVKNPEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAI 123
>pdb|1A8S|A Chain A, Chloroperoxidase FPROPIONATE COMPLEX
Length = 273
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 48/116 (41%), Gaps = 13/116 (11%)
Query: 60 PLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTHAGDVA 119
P+VF HG A W E + F A G+ A G G S P + T+A D+A
Sbjct: 21 PIVFSHGWPLNADSW-ESQMIFLAAQGYRVIAHDRRGHGRSSQP--WSGNDMDTYADDLA 77
Query: 120 DFIQKNLSLPPVLLGHSFGGLIIQYYIARIRNEKMLEMETPYPEIAGAVLVCSVPP 175
I+ VL G S GG + YI R + +A A L+ +VPP
Sbjct: 78 QLIEHLDLRDAVLFGFSTGGGEVARYIGRHGTAR----------VAKAGLISAVPP 123
>pdb|3E3A|A Chain A, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3E3A|B Chain B, The Structure Of Rv0554 From Mycobacterium Tuberculosis
pdb|3HSS|A Chain A, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HSS|B Chain B, A Higher Resolution Structure Of Rv0554 From Mycobacterium
Tuberculosis Complexed With Malonic Acid
pdb|3HYS|A Chain A, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HYS|B Chain B, Structure Of Rv0554 From Mycobacterium Tuberculosis
Complexed With Malonic Acid
pdb|3HZO|A Chain A, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
pdb|3HZO|B Chain B, Rv0554 From Mycobacterium Tuberculosis - The Structure
Solved From The Tetragonal Crystal Form
Length = 293
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 3/89 (3%)
Query: 55 NEKRPPLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTH 114
N P+VF+ G A W H +P F +G+ C G G ++ G + QT
Sbjct: 40 NGTGDPVVFIAGRGGAGRTWHPHQVPAFLAAGYRCITFDNRGIGATENAEGF---TTQTM 96
Query: 115 AGDVADFIQKNLSLPPVLLGHSFGGLIIQ 143
D A I+ P ++G S G I Q
Sbjct: 97 VADTAALIETLDIAPARVVGVSMGAFIAQ 125
>pdb|3C5W|P Chain P, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Query: 37 NIEVIEQKSVTSKDP---DTKNEKRPPLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVS 93
++E +E ++ T KD + P L+ +HG H+A WA + A+
Sbjct: 18 SMEDVEVENETGKDTFRVYKSGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALD 77
Query: 94 LLGQGESDA--PPGTVAGSLQTHAGDVADFIQKNLSLPPVLLGHSFGGLI 141
L GE+ P A ++ G+V + + +L P +L+GH+ GG I
Sbjct: 78 LRSHGETKVKNPEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHAMGGAI 127
>pdb|2WFL|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 60/139 (43%), Gaps = 24/139 (17%)
Query: 52 DTKNEKRPPLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAPPGTVAGSL 111
+ K +K V VHG AW W + P +G AV L G + P + +
Sbjct: 6 NAKQQKH--FVLVHGGCLGAWIWYK-LKPLLESAGHKVTAVDLSAAGIN---PRRL-DEI 58
Query: 112 QTHAGDVADFIQKNLSLPP----VLLGHSFGGLIIQYYIARIRNEKMLEMETPYPE-IAG 166
T ++ S+PP VLLGHSFGG+ + L MET YPE I+
Sbjct: 59 HTFRDYSEPLMEVMASIPPDEKVVLLGHSFGGMSLG-----------LAMET-YPEKISV 106
Query: 167 AVLVCSVPPSGNSGLVWRY 185
AV + ++ P N L + +
Sbjct: 107 AVFMSAMMPDPNHSLTYPF 125
>pdb|2WFL|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Length = 264
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 60/139 (43%), Gaps = 24/139 (17%)
Query: 52 DTKNEKRPPLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAPPGTVAGSL 111
+ K +K V VHG AW W + P +G AV L G + P + +
Sbjct: 6 NAKQQKH--FVLVHGGCLGAWIWYK-LKPLLESAGHKVTAVDLSAAGIN---PRRL-DEI 58
Query: 112 QTHAGDVADFIQKNLSLPP----VLLGHSFGGLIIQYYIARIRNEKMLEMETPYPE-IAG 166
T ++ S+PP VLLGHSFGG+ + L MET YPE I+
Sbjct: 59 HTFRDYSEPLMEVMASIPPDEKVVLLGHSFGGMSLG-----------LAMET-YPEKISV 106
Query: 167 AVLVCSVPPSGNSGLVWRY 185
AV + ++ P N L + +
Sbjct: 107 AVFMSAMMPDPNHSLTYPF 125
>pdb|2WFM|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
pdb|2WFM|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Mutant (H244a)
Length = 264
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 60/139 (43%), Gaps = 24/139 (17%)
Query: 52 DTKNEKRPPLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAPPGTVAGSL 111
+ K +K V VHG AW W + P +G AV L G + P + +
Sbjct: 6 NAKQQKH--FVLVHGGCLGAWIWYK-LKPLLESAGHKVTAVDLSAAGIN---PRRL-DEI 58
Query: 112 QTHAGDVADFIQKNLSLPP----VLLGHSFGGLIIQYYIARIRNEKMLEMETPYPE-IAG 166
T ++ S+PP VLLGHSFGG+ + L MET YPE I+
Sbjct: 59 HTFRDYSEPLMEVMASIPPDEKVVLLGHSFGGMSLG-----------LAMET-YPEKISV 106
Query: 167 AVLVCSVPPSGNSGLVWRY 185
AV + ++ P N L + +
Sbjct: 107 AVFMSAMMPDPNHSLTYPF 125
>pdb|3GZJ|A Chain A, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|B Chain B, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|C Chain C, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|D Chain D, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
pdb|3GZJ|E Chain E, Crystal Structure Of Polyneuridine Aldehyde Esterase
Complexed With 16-Epi-Vellosimine
Length = 258
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 56/130 (43%), Gaps = 22/130 (16%)
Query: 61 LVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTHAGDVAD 120
V VHG AW W + P +G AV L G + P + + T
Sbjct: 7 FVLVHGGCLGAWIWYK-LKPLLESAGHKVTAVDLSAAGIN---PRRL-DEIHTFRDYSEP 61
Query: 121 FIQKNLSLPP----VLLGHSFGGLIIQYYIARIRNEKMLEMETPYPE-IAGAVLVCSVPP 175
++ S+PP VLLGHSFGG+ + L MET YPE I+ AV + ++ P
Sbjct: 62 LMEVMASIPPDEKVVLLGHSFGGMSLG-----------LAMET-YPEKISVAVFMSAMMP 109
Query: 176 SGNSGLVWRY 185
N L + +
Sbjct: 110 DPNHSLTYPF 119
>pdb|3DQZ|A Chain A, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|B Chain B, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|C Chain C, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
pdb|3DQZ|D Chain D, Structure Of The Hydroxynitrile Lyase From Arabidopsis
Thaliana
Length = 258
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 9/91 (9%)
Query: 56 EKRPPLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTHA 115
E++ V VH +YH AW W + P +G AV L G D P ++ ++
Sbjct: 2 ERKHHFVLVHNAYHGAWIWYK-LKPLLESAGHRVTAVELAASG-IDPRPIQAVETVDEYS 59
Query: 116 GDVADFIQKNLSLPP----VLLGHSFGGLII 142
+ + ++ SLP +L+G SFGG+ I
Sbjct: 60 KPLIETLK---SLPENEEVILVGFSFGGINI 87
>pdb|3STY|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I T18a
Mutant
pdb|3STY|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I T18a
Mutant
Length = 267
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 14/120 (11%)
Query: 61 LVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTHAGDVAD 120
V VH ++H AWCW + + SG + A+ L G S P A + + ++
Sbjct: 15 FVLVHAAFHGAWCWYK-IVALMRSSGHNVTALDL---GASGINPKQ-ALQIPNFSDYLSP 69
Query: 121 FIQKNLSLPP----VLLGHSFGGLII----QYYIARIRNEKMLEMETPYPEIAGAVLVCS 172
++ SLP +L+GH+ GGL I + + +I L P P I A VC+
Sbjct: 70 LMEFMASLPANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNI-DATTVCT 128
>pdb|3STX|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I H243a
Variant Complexed With Beta-Ketoheptanoate
pdb|3STX|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I H243a
Variant Complexed With Beta-Ketoheptanoate
Length = 267
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 14/120 (11%)
Query: 61 LVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTHAGDVAD 120
V VH ++H AWCW + + SG + A+ L G S P A + + ++
Sbjct: 15 FVLVHTAFHGAWCWYK-IVALMRSSGHNVTALDL---GASGINPKQ-ALQIPNFSDYLSP 69
Query: 121 FIQKNLSLPP----VLLGHSFGGLII----QYYIARIRNEKMLEMETPYPEIAGAVLVCS 172
++ SLP +L+GH+ GGL I + + +I L P P I A VC+
Sbjct: 70 LMEFMASLPANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNI-DATTVCT 128
>pdb|3STT|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I Apo
Form
pdb|3STT|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I Apo
Form
pdb|3STU|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With Methyl-3-Hydroxydodecanoate
pdb|3STU|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With Methyl-3-Hydroxydodecanoate
pdb|3STV|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 3- Hydroxyoctanoate
pdb|3STV|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 3- Hydroxyoctanoate
pdb|3STW|A Chain A, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 2- Tridecanone
pdb|3STW|B Chain B, Crystal Structure Of Tomato Methylketone Synthase I
Complexed With 2- Tridecanone
Length = 267
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 14/120 (11%)
Query: 61 LVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTHAGDVAD 120
V VH ++H AWCW + + SG + A+ L G S P A + + ++
Sbjct: 15 FVLVHTAFHGAWCWYK-IVALMRSSGHNVTALDL---GASGINPKQ-ALQIPNFSDYLSP 69
Query: 121 FIQKNLSLPP----VLLGHSFGGLII----QYYIARIRNEKMLEMETPYPEIAGAVLVCS 172
++ SLP +L+GH+ GGL I + + +I L P P I A VC+
Sbjct: 70 LMEFMASLPANEKIILVGHALGGLAISKAMETFPEKISVAVFLSGLMPGPNI-DATTVCT 128
>pdb|4DGQ|A Chain A, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|B Chain B, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
pdb|4DGQ|C Chain C, Crystal Structure Of Non-Heme Chloroperoxidase From
Burkholderia Cenocepacia
Length = 280
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 16/112 (14%)
Query: 68 YHAAW-CWAEHW---LPFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTHAGDVADFIQ 123
+H W ++ W L FF + GF A G G S + +A D A ++
Sbjct: 31 FHHGWPLSSDDWDAQLLFFVNKGFRVVAHDRRGHGRSSQV--WDGHDMDHYADDAAAVVE 88
Query: 124 KNLSLPPVLLGHSFGGLIIQYYIARIRNEKMLEMETPYPEIAGAVLVCSVPP 175
K + + +GHS GG + YIAR E+ ++ AVL+ SVPP
Sbjct: 89 KLGTHGAMHVGHSTGGGEVVRYIAR-HGER---------NVSKAVLISSVPP 130
>pdb|3U1T|A Chain A, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
pdb|3U1T|B Chain B, Haloalkane Dehalogenase, Dmma, Of Marine Microbial Origin
Length = 309
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 60 PLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTHAGDVA 119
P++F+HG+ +++ W + +P+ +G+ A L+G G+S P + LQ H
Sbjct: 31 PVLFLHGNPTSSYLW-RNIIPYVVAAGYRAVAPDLIGXGDSAKP--DIEYRLQDHVAYXD 87
Query: 120 DFIQKNLSLPPVLLGHSFGGLI 141
FI VL+ H +G +I
Sbjct: 88 GFIDALGLDDXVLVIHDWGSVI 109
>pdb|4XIA|A Chain A, Structures Of D-xylose Isomerase From Arthrobacter Strain
B3728 Containing The Inhibitors Xylitol And D-sorbitol
At 2.5 Angstroms And 2.3 Angstroms Resolution,
Respectively
pdb|4XIA|B Chain B, Structures Of D-xylose Isomerase From Arthrobacter Strain
B3728 Containing The Inhibitors Xylitol And D-sorbitol
At 2.5 Angstroms And 2.3 Angstroms Resolution,
Respectively
pdb|5XIA|A Chain A, Structures Of D-Xylose Isomerase From Arthrobacter Strain
B3728 Containing The Inhibitors Xylitol And D-Sorbitol
At 2.5 Angstroms And 2.3 Angstroms Resolution,
Respectively
pdb|5XIA|B Chain B, Structures Of D-Xylose Isomerase From Arthrobacter Strain
B3728 Containing The Inhibitors Xylitol And D-Sorbitol
At 2.5 Angstroms And 2.3 Angstroms Resolution,
Respectively
Length = 393
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 8 VLNKAHKMRVPFELKQGQTRVSHQLPS---GLN-IEVIEQKSVTSKDPDTKNEKRPPLVF 63
+ +K + +R+ E K + R LP+ GL IE +E + +P+T +E+ L F
Sbjct: 167 IKDKGYNLRIALEPKPNEPRGDIFLPTVGHGLAFIEQLEHGDIVGLNPETGHEQMAGLNF 226
Query: 64 VHGSYHAAWC 73
HG A W
Sbjct: 227 THGIAQALWA 236
>pdb|1DID|A Chain A, Observations Of Reaction Intermediates And The Mechanism
Of Aldose- Ketose Interconversion By D-Xylose Isomerase
pdb|1DID|B Chain B, Observations Of Reaction Intermediates And The Mechanism
Of Aldose- Ketose Interconversion By D-Xylose Isomerase
pdb|1DIE|A Chain A, Observations Of Reaction Intermediates And The Mechanism
Of Aldose- Ketose Interconversion By D-Xylose Isomerase
pdb|1DIE|B Chain B, Observations Of Reaction Intermediates And The Mechanism
Of Aldose- Ketose Interconversion By D-Xylose Isomerase
pdb|1XLA|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLA|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLB|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLB|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLC|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLC|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLD|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLD|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLE|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLE|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLF|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLF|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLG|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLG|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLH|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLH|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLI|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLI|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLJ|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLJ|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLK|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLK|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLL|A Chain A, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
pdb|1XLL|B Chain B, Mechanism For Aldose-Ketose Interconversion By D-Xylose
Isomerase Involving Ring Opening Followed By A
1,2-Hydride Shift
Length = 394
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 8 VLNKAHKMRVPFELKQGQTRVSHQLPS---GLN-IEVIEQKSVTSKDPDTKNEKRPPLVF 63
+ +K + +R+ E K + R LP+ GL IE +E + +P+T +E+ L F
Sbjct: 168 IKDKGYNLRIALEPKPNEPRGDIFLPTVGHGLAFIEQLEHGDIVGLNPETGHEQMAGLNF 227
Query: 64 VHGSYHAAWC 73
HG A W
Sbjct: 228 THGIAQALWA 237
>pdb|2R11|A Chain A, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|B Chain B, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|C Chain C, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
pdb|2R11|D Chain D, Crystal Structure Of Putative Hydrolase (2632844) From
Bacillus Subtilis At 1.96 A Resolution
Length = 306
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 56 EKRPPLVFVHGSYHAAWCWAEHWLPFFAD--SGFDCYAVSLLGQGESDAPPGTVAGSLQT 113
E PPLV +HG+ + + W P AD S + YAV ++G ++ + P V+G+
Sbjct: 65 EDAPPLVLLHGALFS----STXWYPNIADWSSKYRTYAVDIIGD-KNKSIPENVSGTRTD 119
Query: 114 HAGDVADFIQKNLSLPPV-LLGHSFGGLIIQYYIAR 148
+A + D + NL + +G S GGL ++ R
Sbjct: 120 YANWLLD-VFDNLGIEKSHXIGLSLGGLHTXNFLLR 154
>pdb|1XLM|A Chain A, D254e, D256e Mutant Of D-Xylose Isomerase Complexed With
Al3 And Xylitol
pdb|1XLM|B Chain B, D254e, D256e Mutant Of D-Xylose Isomerase Complexed With
Al3 And Xylitol
Length = 394
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 8 VLNKAHKMRVPFELKQGQTRVSHQLPS---GLN-IEVIEQKSVTSKDPDTKNEKRPPLVF 63
+ +K + +R+ E K + R LP+ GL IE +E + +P+T +E+ L F
Sbjct: 168 IKDKGYNLRIALEPKPNEPRGDIFLPTVGHGLAFIEQLEHGDIVGLNPETGHEQMAGLNF 227
Query: 64 VHGSYHAAWC 73
HG A W
Sbjct: 228 THGIAQALWA 237
>pdb|2RON|A Chain A, The External Thioesterase Of The Surfactin-Synthetase
pdb|2K2Q|B Chain B, Complex Structure Of The External Thioesterase Of The
Surfactin-Synthetase With A Carrier Domain
Length = 242
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 23/91 (25%)
Query: 97 QGESD----APPGTVAGSLQTHA----GDVADFIQKNLSLPP----VLLGHSFGGLIIQY 144
QGE + PPG G+ QT A ++ D ++ L+L P VL GHS GG+I
Sbjct: 37 QGECEMLAAEPPGH--GTNQTSAIEDLEELTDLYKQELNLRPDRPFVLFGHSMGGMIT-- 92
Query: 145 YIARIRNEKMLEMETPYPEIAGAVLVCSVPP 175
R + LE E +P+ AV++ ++ P
Sbjct: 93 ----FRLAQKLEREGIFPQ---AVIISAIQP 116
>pdb|1ZOI|A Chain A, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|B Chain B, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
pdb|1ZOI|C Chain C, Crystal Structure Of A Stereoselective Esterase From
Pseudomonas Putida Ifo12996
Length = 276
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 54/136 (39%), Gaps = 19/136 (13%)
Query: 46 VTSKD------PDTKNEKRPPLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGE 99
VT+KD D P + F HG +A W L FF G+ A G G
Sbjct: 4 VTTKDGVQIFYKDWGPRDAPVIHFHHGWPLSADDWDAQLL-FFLAHGYRVVAHDRRGHGR 62
Query: 100 SDAPPGTVAGSLQTHAGDVADFIQKNLSLPPVLLGHSFGGLIIQYYIARIRNEKMLEMET 159
S + +A DVA + V +GHS GG + Y+AR
Sbjct: 63 SSQV--WDGHDMDHYADDVAAVVAHLGIQGAVHVGHSTGGGEVVRYMAR----------H 110
Query: 160 PYPEIAGAVLVCSVPP 175
P ++A AVL+ +VPP
Sbjct: 111 PEDKVAKAVLIAAVPP 126
>pdb|3QNT|A Chain A, Npc1l1 (Ntd) Structure
Length = 265
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 10/71 (14%)
Query: 26 TRVSH----QLPSGLNIEVIEQKSVTSKDPDTKNEKRPPLV------FVHGSYHAAWCWA 75
TRV+ QLP+ + E Q S + D+ + R P + G Y +A C A
Sbjct: 121 TRVAQLGAGQLPAVVAYEAFYQHSFAEQSYDSCSRVRVPAAATLAVGTMCGVYGSALCNA 180
Query: 76 EHWLPFFADSG 86
+ WL F D+G
Sbjct: 181 QRWLNFQGDTG 191
>pdb|2ZJF|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Epoxide
Hydrolase B Complexed With An Inhibitor
Length = 362
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 36 LNIEVIEQKSVTSKDPDTKNEKRPPLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLL 95
LN +V PD + P +V +HG + + W H +P A +G+ A+
Sbjct: 14 LNCRGTRIHAVADSPPDQQG---PLVVLLHGFPESWYSW-RHQIPALAGAGYRVVAIDQR 69
Query: 96 GQGESDAPPGTVAGSLQTHAGDVADFIQKNLSLPPVLLGHSFG 138
G G S A ++ GDV + + ++GH +G
Sbjct: 70 GYGRSSKYRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWG 112
>pdb|2E3J|A Chain A, The Crystal Structure Of Epoxide Hydrolase B (Rv1938) From
Mycobacterium Tuberculosis At 2.1 Angstrom
Length = 356
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 4/103 (3%)
Query: 36 LNIEVIEQKSVTSKDPDTKNEKRPPLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLL 95
LN +V PD + P +V +HG + + W H +P A +G+ A+
Sbjct: 8 LNCRGTRIHAVADSPPDQQG---PLVVLLHGFPESWYSW-RHQIPALAGAGYRVVAIDQR 63
Query: 96 GQGESDAPPGTVAGSLQTHAGDVADFIQKNLSLPPVLLGHSFG 138
G G S A ++ GDV + + ++GH +G
Sbjct: 64 GYGRSSKYRVQKAYRIKELVGDVVGVLDSYGAEQAFVVGHDWG 106
>pdb|1UFO|A Chain A, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|B Chain B, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|C Chain C, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|D Chain D, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|E Chain E, Crystal Structure Of Tt1662 From Thermus Thermophilus
pdb|1UFO|F Chain F, Crystal Structure Of Tt1662 From Thermus Thermophilus
Length = 238
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 15/96 (15%)
Query: 67 SYHAAWCWAEH---WLPFFADSGFDCYAVSLLGQGESDAPPGT------------VAGSL 111
+ H EH LP +A+ GF A GE + PP + VA
Sbjct: 29 ALHGLQGSKEHILALLPGYAERGFLLLAFDAPRHGEREGPPPSSKSPRYVEEVYRVALGF 88
Query: 112 QTHAGDVADFIQKNLSLPPVLLGHSFGGLIIQYYIA 147
+ A VA+ ++ LP L G S G + +A
Sbjct: 89 KEEARRVAEEAERRFGLPLFLAGGSLGAFVAHLLLA 124
>pdb|2G4L|A Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
Length = 257
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 49/121 (40%), Gaps = 22/121 (18%)
Query: 61 LVFVHGSYHAAWCWAEHWL-PFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTHAGDVA 119
V +H H AW W H L P G A+ L G D GS ++ +
Sbjct: 6 FVLIHTICHGAWIW--HKLKPLLEALGHKVTALDLAASG-VDPRQIEEIGSFDEYSEPLL 62
Query: 120 DFIQKNLSLPP----VLLGHSFGGLIIQYYIARIRNEKMLEMETPYPEIAGAVLVCSVPP 175
F++ +LPP +L+G S GGL I I +K E +IA AV SV P
Sbjct: 63 TFLE---ALPPGEKVILVGESCGGLNIA-----IAADKYXE------KIAAAVFHNSVLP 108
Query: 176 S 176
Sbjct: 109 D 109
>pdb|1SCI|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis
pdb|1SCK|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetone
pdb|1SCQ|A Chain A, K236l Mutant Of Hydroxynitrile Lyase From Hevea
Brasiliensis In Complex With Acetonecyanohydrin
Length = 257
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 49/121 (40%), Gaps = 22/121 (18%)
Query: 61 LVFVHGSYHAAWCWAEHWL-PFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTHAGDVA 119
V +H H AW W H L P G A+ L G D GS ++ +
Sbjct: 6 FVLIHTICHGAWIW--HKLKPLLEALGHKVTALDLAASG-VDPRQIEEIGSFDEYSEPLL 62
Query: 120 DFIQKNLSLPP----VLLGHSFGGLIIQYYIARIRNEKMLEMETPYPEIAGAVLVCSVPP 175
F++ +LPP +L+G S GGL I I +K E +IA AV SV P
Sbjct: 63 TFLE---ALPPGEKVILVGESCGGLNIA-----IAADKYCE------KIAAAVFHNSVLP 108
Query: 176 S 176
Sbjct: 109 D 109
>pdb|1YB6|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With Mandelonitrile
pdb|1YB7|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With 2,3- Dimethyl-2-Hydroxy-Butyronitrile
Length = 256
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 49/121 (40%), Gaps = 22/121 (18%)
Query: 61 LVFVHGSYHAAWCWAEHWL-PFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTHAGDVA 119
V +H H AW W H L P G A+ L G D GS ++ +
Sbjct: 5 FVLIHTICHGAWIW--HKLKPLLEALGHKVTALDLAASG-VDPRQIEEIGSFDEYSEPLL 61
Query: 120 DFIQKNLSLPP----VLLGHSFGGLIIQYYIARIRNEKMLEMETPYPEIAGAVLVCSVPP 175
F++ +LPP +L+G S GGL I I +K E +IA AV SV P
Sbjct: 62 TFLE---ALPPGEKVILVGESCGGLNIA-----IAADKYCE------KIAAAVFHNSVLP 107
Query: 176 S 176
Sbjct: 108 D 108
>pdb|1YAS|A Chain A, Hydroxynitrile Lyase Complexed With Histidine
pdb|7YAS|A Chain A, Hydroxynitrile Lyase, Low Temperature Native Structure
pdb|2YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis Complexed
With Rhodanide
pdb|3YAS|A Chain A, Hydroxynitrile Lyase Complexed With Acetone
pdb|4YAS|A Chain A, Hydroxynitrile Lyase Complexed With Chloralhydrate
pdb|5YAS|A Chain A, Hydroxynitrile Lyase Complexed With Hexafluoroacetone
pdb|6YAS|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis, Room
Temperature Structure
pdb|1QJ4|A Chain A, Hydroxynitrile-lyase From Hevea Brasiliensis At Atomic
Resolution
pdb|1SC9|A Chain A, Hydroxynitrile Lyase From Hevea Brasiliensis In Complex
With The Natural Substrate Acetone Cyanohydrin
pdb|3C6X|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Y|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C6Z|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
pdb|3C70|A Chain A, Hnl From Hevea Brasiliensis To Atomic Resolution
Length = 257
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 49/121 (40%), Gaps = 22/121 (18%)
Query: 61 LVFVHGSYHAAWCWAEHWL-PFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTHAGDVA 119
V +H H AW W H L P G A+ L G D GS ++ +
Sbjct: 6 FVLIHTICHGAWIW--HKLKPLLEALGHKVTALDLAASG-VDPRQIEEIGSFDEYSEPLL 62
Query: 120 DFIQKNLSLPP----VLLGHSFGGLIIQYYIARIRNEKMLEMETPYPEIAGAVLVCSVPP 175
F++ +LPP +L+G S GGL I I +K E +IA AV SV P
Sbjct: 63 TFLE---ALPPGEKVILVGESCGGLNIA-----IAADKYCE------KIAAAVFHNSVLP 108
Query: 176 S 176
Sbjct: 109 D 109
>pdb|3G9X|A Chain A, Structure Of Haloalkane Dehalogenase Dhaa14 Mutant I135f
From Rhodococcus Rhodochrous
Length = 299
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 60 PLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTHAGDVA 119
P++F+HG+ +++ W + +P A S C A L+G G+SD P + H +
Sbjct: 34 PVLFLHGNPTSSYLW-RNIIPHVAPS-HRCIAPDLIGMGKSDKP--DLDYFFDDHVRYLD 89
Query: 120 DFIQKNLSLPPVLLGHSFGGLIIQYYI----ARIRNEKMLEMETPYP 162
FI+ VL+ H +G + ++ R++ +E P+P
Sbjct: 90 AFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPFP 136
>pdb|3KXP|A Chain A, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|B Chain B, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|C Chain C, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|D Chain D, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|E Chain E, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|F Chain F, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|G Chain G, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|H Chain H, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|I Chain I, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|J Chain J, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|K Chain K, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
pdb|3KXP|L Chain L, Crystal Structure Of E-2-(Acetamidomethylene)succinate
Hydrolase
Length = 314
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 95/253 (37%), Gaps = 55/253 (21%)
Query: 87 FDCYAVSLLGQGESDAPPGTVAGSLQTHAGDVADFIQKNLSLPPVLLGHSFGGLIIQYYI 146
F AV G G SD P +A D+A I+ +L+GHS G
Sbjct: 95 FTTIAVDQRGHGLSDKP--ETGYEANDYADDIAGLIRTLARGHAILVGHSLGA------- 145
Query: 147 ARIRNEKMLEMETPYPEIAGAVLVCSVPPSGNSGLVWRYLFTKPIAAFKVTRSLAAKAFQ 206
RN + YP++ +V+ P Y+ T+ + A + + ++ F+
Sbjct: 146 ---RNS--VTAAAKYPDLVRSVVAIDFTP---------YIETEALDALEARVNAGSQLFE 191
Query: 207 TDLSLCKETFFSSSMEDHLVLRYQELMKESSRM--------------PLFDL-------R 245
D+ ++E +L RY + ++ R+ PL R
Sbjct: 192 -DIK---------AVEAYLAGRYPNIPADAIRIRAESGYQPVDGGLRPLASSAAXAQTAR 241
Query: 246 KLNASLPVPSVPKSSIKVLVLGAKDDFIVDAQGLSETGSFYGVLPVCVEGVAHDMMLDCS 305
L + L VP+ + VL++ + +V A L++T LPV V A + + S
Sbjct: 242 GLRSDL-VPAYRDVTKPVLIVRGESSKLVSAAALAKTSRLRPDLPVVVVPGADHYVNEVS 300
Query: 306 WEKGASVILSWLD 318
E I +++D
Sbjct: 301 PEITLKAITNFID 313
>pdb|3SK0|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant Dhaa12
Length = 311
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 60 PLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAP 103
P++F+HG+ +++ W + +P A S C A L+G G+SD P
Sbjct: 34 PVLFLHGNPTSSYLW-RNIIPHVAPS-HRCIAPDLIGMGKSDKP 75
>pdb|3RK4|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31
pdb|3RLT|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 299
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 60 PLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTHAGDVA 119
P++F+HG+ +++ W + +P A S C A L+G G+SD P + H +
Sbjct: 34 PVLFLHGNPTSSYLW-RNIIPHVAPS-HRCIAPDLIGMGKSDKP--DLDYFFDDHVRYLD 89
Query: 120 DFIQKNLSLPPVLLGHSFGGLIIQYYI----ARIRNEKMLEMETPYP 162
FI+ VL+ H +G + ++ R++ +E P+P
Sbjct: 90 AFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPFP 136
>pdb|3FWH|A Chain A, Structure Of Haloalkane Dehalogenase Mutant Dha15
(I135fC176Y) FROM Rhodococcus Rhodochrous
Length = 299
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 60 PLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTHAGDVA 119
P++F+HG+ +++ W + +P A S C A L+G G+SD P + H +
Sbjct: 34 PVLFLHGNPTSSYLW-RNIIPHVAPS-HRCIAPDLIGMGKSDKP--DLDYFFDDHVRYLD 89
Query: 120 DFIQKNLSLPPVLLGHSFGGLIIQYYI----ARIRNEKMLEMETPYP 162
FI+ VL+ H +G + ++ R++ +E P+P
Sbjct: 90 AFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPFP 136
>pdb|2V9Z|A Chain A, Structure Of The Rhodococcus Haloalkane Dehalogenase
Mutant With Enhanced Enantioselectivity
Length = 304
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 60 PLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAP 103
P++F+HG+ +++ W + +P A S C A L+G G+SD P
Sbjct: 34 PVLFLHGNPTSSYLW-RNIIPHVAPS-HRCIAPDLIGMGKSDKP 75
>pdb|4FWB|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant Dhaa31 In Complex With 1, 2, 3 -
Trichloropropane
Length = 292
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 8/107 (7%)
Query: 60 PLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAPPGTVAGSLQTHAGDVA 119
P++F+HG+ +++ W + +P A S C A L+G G+SD P + H +
Sbjct: 31 PVLFLHGNPTSSYLW-RNIIPHVAPS-HRCIAPDLIGMGKSDKP--DLDYFFDDHVRYLD 86
Query: 120 DFIQKNLSLPPVLLGHSFGGLIIQYYI----ARIRNEKMLEMETPYP 162
FI+ VL+ H +G + ++ R++ +E P+P
Sbjct: 87 AFIEALGLEEVVLVIHDWGSALGFHWAKRNPERVKGIACMEFIRPFP 133
>pdb|1BN6|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
pdb|1BN7|A Chain A, Haloalkane Dehalogenase From A Rhodococcus Species
Length = 294
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 60 PLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAP 103
P++F+HG+ +++ W + +P A S C A L+G G+SD P
Sbjct: 34 PVLFLHGNPTSSYLW-RNIIPHVAPS-HRCIAPDLIGMGKSDKP 75
>pdb|4F60|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (t148l, G171q, A172v, C176f)
Length = 299
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 60 PLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAP 103
P++F+HG+ +++ W + +P A S C A L+G G+SD P
Sbjct: 34 PVLFLHGNPTSSYLW-RNIIPHVAPS-HRCIAPDLIGMGKSDKP 75
>pdb|1CQW|A Chain A, Nai Cocrystallised With Haloalkane Dehalogenase From A
Rhodococcus Species
Length = 295
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 60 PLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAP 103
P++F+HG+ +++ W + +P A S C A L+G G+SD P
Sbjct: 31 PVLFLHGNPTSSYLW-RNIIPHVAPS-HRCIAPDLIGMGKSDKP 72
>pdb|4F5Z|A Chain A, Crystal Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Mutant (l95v, A172v)
Length = 299
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 60 PLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAP 103
P++F+HG+ +++ W + +P A S C A L+G G+SD P
Sbjct: 34 PVLFLHGNPTSSYLW-RNIIPHVAPS-HRCIAPDLIGMGKSDKP 75
>pdb|3FBW|A Chain A, Structure Of Rhodococcus Rhodochrous Haloalkane
Dehalogenase Dhaa Mutant C176y
Length = 299
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 60 PLVFVHGSYHAAWCWAEHWLPFFADSGFDCYAVSLLGQGESDAP 103
P++F+HG+ +++ W + +P A S C A L+G G+SD P
Sbjct: 34 PVLFLHGNPTSSYLW-RNIIPHVAPS-HRCIAPDLIGMGKSDKP 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,728,022
Number of Sequences: 62578
Number of extensions: 399380
Number of successful extensions: 1046
Number of sequences better than 100.0: 57
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1017
Number of HSP's gapped (non-prelim): 59
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)