Query 020742
Match_columns 322
No_of_seqs 396 out of 2470
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 04:46:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020742.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020742hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2937 Decapping enzyme compl 100.0 1.8E-43 3.8E-48 324.0 7.6 293 15-321 4-347 (348)
2 PF05026 DCP2: Dcp2, box A dom 100.0 8.1E-33 1.8E-37 211.1 3.5 85 20-104 1-85 (85)
3 cd03672 Dcp2p mRNA decapping e 99.9 1.5E-25 3.3E-30 189.7 12.1 144 107-251 1-144 (145)
4 cd04670 Nudix_Hydrolase_12 Mem 99.8 1.4E-18 3.1E-23 142.9 13.6 107 108-216 3-112 (127)
5 cd04680 Nudix_Hydrolase_21 Mem 99.8 4.4E-18 9.5E-23 138.0 12.3 105 109-217 2-108 (120)
6 cd04678 Nudix_Hydrolase_19 Mem 99.8 1.3E-17 2.8E-22 137.4 14.5 109 108-217 3-117 (129)
7 cd04691 Nudix_Hydrolase_32 Mem 99.8 5.9E-18 1.3E-22 137.8 12.0 101 110-217 3-108 (117)
8 cd04700 DR1025_like DR1025 fro 99.8 8.1E-18 1.8E-22 141.7 13.0 113 102-217 8-125 (142)
9 cd04679 Nudix_Hydrolase_20 Mem 99.8 9.2E-18 2E-22 137.7 12.9 106 108-216 3-114 (125)
10 cd04671 Nudix_Hydrolase_13 Mem 99.8 9.2E-18 2E-22 138.1 12.9 105 109-216 2-109 (123)
11 cd03424 ADPRase_NUDT5 ADP-ribo 99.8 1E-17 2.2E-22 139.4 13.0 109 107-217 2-115 (137)
12 cd03671 Ap4A_hydrolase_plant_l 99.8 2.6E-17 5.7E-22 139.2 14.9 109 108-217 4-131 (147)
13 cd03673 Ap6A_hydrolase Diadeno 99.8 7.6E-18 1.6E-22 138.4 11.2 108 108-217 2-116 (131)
14 cd04683 Nudix_Hydrolase_24 Mem 99.7 2.1E-17 4.6E-22 134.4 13.1 104 110-216 3-113 (120)
15 PRK00241 nudC NADH pyrophospha 99.7 1.3E-17 2.9E-22 153.6 13.4 165 29-218 73-239 (256)
16 PLN02325 nudix hydrolase 99.7 7E-17 1.5E-21 136.5 15.1 112 103-216 5-124 (144)
17 PRK00714 RNA pyrophosphohydrol 99.7 5.3E-17 1.1E-21 139.1 14.0 109 107-216 8-134 (156)
18 cd03675 Nudix_Hydrolase_2 Cont 99.7 7.3E-17 1.6E-21 133.8 14.5 105 110-218 3-112 (134)
19 cd03674 Nudix_Hydrolase_1 Memb 99.7 3.6E-17 7.7E-22 137.0 12.6 108 108-217 3-123 (138)
20 cd04666 Nudix_Hydrolase_9 Memb 99.7 3.5E-17 7.6E-22 134.5 12.2 106 109-217 2-115 (122)
21 cd04669 Nudix_Hydrolase_11 Mem 99.7 5.3E-17 1.2E-21 132.9 12.8 104 110-217 3-114 (121)
22 cd03430 GDPMH GDP-mannose glyc 99.7 4.7E-17 1E-21 137.5 12.7 107 108-217 13-132 (144)
23 cd04696 Nudix_Hydrolase_37 Mem 99.7 4.4E-17 9.6E-22 133.7 12.1 105 108-217 3-114 (125)
24 PRK15434 GDP-mannose mannosyl 99.7 6.2E-17 1.3E-21 139.0 13.4 106 108-217 18-137 (159)
25 cd04681 Nudix_Hydrolase_22 Mem 99.7 4.8E-17 1E-21 134.1 12.0 104 109-215 3-113 (130)
26 cd04684 Nudix_Hydrolase_25 Con 99.7 6.3E-17 1.4E-21 132.4 12.6 106 109-217 2-117 (128)
27 cd04677 Nudix_Hydrolase_18 Mem 99.7 6.6E-17 1.4E-21 133.4 12.7 108 107-217 7-122 (132)
28 cd04689 Nudix_Hydrolase_30 Mem 99.7 7.7E-17 1.7E-21 132.2 12.8 105 110-216 4-113 (125)
29 cd04687 Nudix_Hydrolase_28 Mem 99.7 1.2E-16 2.5E-21 131.8 13.9 107 109-217 3-121 (128)
30 PRK11762 nudE adenosine nucleo 99.7 1.1E-16 2.3E-21 140.8 14.5 119 108-229 48-174 (185)
31 cd04672 Nudix_Hydrolase_14 Mem 99.7 1E-16 2.2E-21 131.3 13.2 104 110-218 5-113 (123)
32 cd04673 Nudix_Hydrolase_15 Mem 99.7 6.7E-17 1.5E-21 131.3 12.0 102 110-217 3-114 (122)
33 cd04511 Nudix_Hydrolase_4 Memb 99.7 7.5E-17 1.6E-21 133.5 12.3 109 101-216 7-118 (130)
34 cd04676 Nudix_Hydrolase_17 Mem 99.7 1.5E-16 3.2E-21 129.9 13.3 108 107-217 2-117 (129)
35 COG1051 ADP-ribose pyrophospha 99.7 7E-17 1.5E-21 136.7 11.7 112 102-217 5-122 (145)
36 PRK10729 nudF ADP-ribose pyrop 99.7 1.4E-16 3E-21 142.1 13.9 126 107-232 49-189 (202)
37 cd04688 Nudix_Hydrolase_29 Mem 99.7 1.5E-16 3.2E-21 130.7 12.9 107 108-217 3-118 (126)
38 PRK09438 nudB dihydroneopterin 99.7 8.9E-17 1.9E-21 135.9 11.8 110 102-217 3-129 (148)
39 cd04682 Nudix_Hydrolase_23 Mem 99.7 8.7E-17 1.9E-21 131.5 10.9 104 109-217 3-114 (122)
40 cd03427 MTH1 MutT homolog-1 (M 99.7 1.2E-16 2.6E-21 132.8 11.5 104 108-217 2-111 (137)
41 cd04690 Nudix_Hydrolase_31 Mem 99.7 1.4E-16 3E-21 129.1 11.1 101 110-216 3-109 (118)
42 cd03429 NADH_pyrophosphatase N 99.7 7.9E-17 1.7E-21 133.8 9.7 105 108-217 1-107 (131)
43 cd04667 Nudix_Hydrolase_10 Mem 99.7 2.9E-16 6.4E-21 126.5 11.8 98 111-217 4-101 (112)
44 PF00293 NUDIX: NUDIX domain; 99.7 2.9E-16 6.4E-21 128.8 11.4 108 108-217 3-119 (134)
45 TIGR00052 nudix-type nucleosid 99.7 2.7E-16 5.8E-21 138.4 11.7 126 107-232 44-183 (185)
46 PRK15472 nucleoside triphospha 99.7 4E-16 8.7E-21 130.8 12.2 106 108-217 5-125 (141)
47 cd04693 Nudix_Hydrolase_34 Mem 99.7 1.9E-16 4.1E-21 130.3 9.7 104 109-217 2-113 (127)
48 PRK15009 GDP-mannose pyrophosp 99.7 5.7E-16 1.2E-20 136.9 13.4 125 107-232 45-184 (191)
49 cd04686 Nudix_Hydrolase_27 Mem 99.7 5E-16 1.1E-20 129.0 11.9 106 109-217 2-119 (131)
50 cd04697 Nudix_Hydrolase_38 Mem 99.7 3.4E-16 7.3E-21 129.0 10.6 104 109-217 2-112 (126)
51 cd03428 Ap4A_hydrolase_human_l 99.7 3.3E-16 7.2E-21 128.9 10.2 106 108-217 3-115 (130)
52 cd04699 Nudix_Hydrolase_39 Mem 99.7 5.8E-16 1.3E-20 126.8 11.5 105 108-217 2-114 (129)
53 cd03426 CoAse Coenzyme A pyrop 99.7 4.1E-16 8.9E-21 133.6 10.8 107 109-217 4-118 (157)
54 PRK15393 NUDIX hydrolase YfcD; 99.7 7.8E-16 1.7E-20 134.9 12.5 127 107-250 37-170 (180)
55 cd04664 Nudix_Hydrolase_7 Memb 99.7 6.3E-16 1.4E-20 127.4 10.7 105 109-217 3-118 (129)
56 cd04695 Nudix_Hydrolase_36 Mem 99.6 2.4E-15 5.1E-20 124.7 13.1 96 119-217 13-114 (131)
57 PRK10546 pyrimidine (deoxy)nuc 99.6 1.6E-15 3.4E-20 125.8 12.0 104 107-217 4-112 (135)
58 cd04661 MRP_L46 Mitochondrial 99.6 2.2E-15 4.8E-20 125.3 10.4 94 120-217 13-120 (132)
59 PRK10776 nucleoside triphospha 99.6 7.8E-15 1.7E-19 120.0 13.0 105 107-217 4-113 (129)
60 cd02885 IPP_Isomerase Isopente 99.6 3.9E-15 8.5E-20 128.5 11.1 106 107-217 30-148 (165)
61 cd03425 MutT_pyrophosphohydrol 99.6 7.8E-15 1.7E-19 118.5 12.2 105 107-217 1-110 (124)
62 cd04692 Nudix_Hydrolase_33 Mem 99.6 3.3E-15 7.2E-20 125.8 10.3 109 108-217 3-127 (144)
63 TIGR00586 mutt mutator mutT pr 99.6 2.4E-14 5.2E-19 117.3 13.1 104 108-217 5-113 (128)
64 cd04694 Nudix_Hydrolase_35 Mem 99.6 1.8E-14 3.8E-19 121.8 11.5 106 109-216 3-130 (143)
65 cd02883 Nudix_Hydrolase Nudix 99.6 3.2E-14 6.9E-19 114.0 12.4 105 109-216 2-111 (123)
66 PRK05379 bifunctional nicotina 99.6 2.6E-14 5.6E-19 137.1 13.6 112 103-217 199-322 (340)
67 PRK03759 isopentenyl-diphospha 99.6 1.4E-14 3.1E-19 127.2 10.5 106 107-217 34-152 (184)
68 cd04665 Nudix_Hydrolase_8 Memb 99.6 6.6E-14 1.4E-18 114.5 12.8 99 110-214 3-102 (118)
69 cd04685 Nudix_Hydrolase_26 Mem 99.5 6E-14 1.3E-18 117.0 11.0 108 109-217 2-123 (133)
70 TIGR02705 nudix_YtkD nucleosid 99.5 1.8E-13 3.9E-18 116.9 13.4 100 109-217 26-127 (156)
71 cd04674 Nudix_Hydrolase_16 Mem 99.5 3.5E-13 7.5E-18 110.2 13.7 57 106-164 3-62 (118)
72 PRK10707 putative NUDIX hydrol 99.5 1.6E-13 3.5E-18 121.3 12.4 107 109-217 32-146 (190)
73 TIGR02150 IPP_isom_1 isopenten 99.5 1.1E-13 2.4E-18 118.8 10.6 107 104-217 24-142 (158)
74 cd04662 Nudix_Hydrolase_5 Memb 99.5 2.3E-13 4.9E-18 112.1 11.5 55 109-163 2-65 (126)
75 COG2816 NPY1 NTP pyrophosphohy 99.5 4.4E-14 9.5E-19 129.6 6.6 161 34-219 90-253 (279)
76 cd03676 Nudix_hydrolase_3 Memb 99.5 7.8E-13 1.7E-17 115.7 12.2 114 114-229 41-173 (180)
77 PRK08999 hypothetical protein; 99.4 1E-12 2.3E-17 124.3 12.8 105 107-217 5-114 (312)
78 cd04663 Nudix_Hydrolase_6 Memb 99.4 2.8E-12 6E-17 105.9 13.0 105 111-216 4-115 (126)
79 PLN03143 nudix hydrolase; Prov 99.4 1.7E-12 3.8E-17 121.1 11.9 110 108-217 129-265 (291)
80 PLN02709 nudix hydrolase 99.4 3.1E-12 6.8E-17 114.8 12.2 97 120-217 51-155 (222)
81 COG0494 MutT NTP pyrophosphohy 99.3 1.4E-11 2.9E-16 101.0 10.7 107 111-217 15-134 (161)
82 cd03670 ADPRase_NUDT9 ADP-ribo 99.3 1.7E-11 3.6E-16 107.7 11.6 43 120-162 49-91 (186)
83 KOG2839 Diadenosine and diphos 99.3 3.4E-12 7.4E-17 105.6 6.8 111 106-217 8-125 (145)
84 KOG3084 NADH pyrophosphatase I 99.3 6.3E-13 1.4E-17 122.5 0.0 114 101-216 181-297 (345)
85 KOG3041 Nucleoside diphosphate 99.1 1.4E-10 3E-15 100.5 8.2 144 66-216 39-193 (225)
86 PLN02552 isopentenyl-diphospha 99.1 3.6E-10 7.9E-15 103.5 10.9 109 106-217 55-203 (247)
87 PLN02791 Nudix hydrolase homol 99.1 6.2E-10 1.3E-14 115.7 11.3 110 107-217 32-158 (770)
88 KOG3069 Peroxisomal NUDIX hydr 99.0 2.4E-09 5.1E-14 95.5 8.7 97 120-216 58-162 (246)
89 KOG2937 Decapping enzyme compl 98.8 2.3E-10 4.9E-15 106.3 -3.0 149 16-164 145-297 (348)
90 KOG0648 Predicted NUDIX hydrol 98.8 2.9E-09 6.3E-14 98.5 2.8 112 103-216 111-230 (295)
91 cd03431 DNA_Glycosylase_C DNA 98.7 1.2E-07 2.6E-12 76.0 11.1 95 109-217 5-105 (118)
92 COG4119 Predicted NTP pyrophos 98.6 1.3E-07 2.9E-12 76.6 7.7 104 109-216 5-134 (161)
93 PRK10880 adenine DNA glycosyla 98.3 6.8E-06 1.5E-10 79.1 11.7 134 60-217 192-331 (350)
94 PF14815 NUDIX_4: NUDIX domain 98.1 1.5E-05 3.3E-10 64.1 9.2 96 112-217 2-103 (114)
95 COG1443 Idi Isopentenyldiphosp 98.1 7.3E-06 1.6E-10 70.3 5.9 105 108-217 34-153 (185)
96 PLN02839 nudix hydrolase 98.0 3.5E-05 7.6E-10 73.9 9.4 95 120-216 218-326 (372)
97 TIGR01084 mutY A/G-specific ad 97.4 0.00031 6.8E-09 65.6 6.6 70 60-138 188-261 (275)
98 KOG4432 Uncharacterized NUDIX 97.4 0.00056 1.2E-08 63.4 7.2 86 103-188 22-139 (405)
99 KOG4195 Transient receptor pot 97.2 0.00037 7.9E-09 62.0 4.0 39 121-159 140-178 (275)
100 COG4112 Predicted phosphoester 97.1 0.005 1.1E-07 52.3 9.4 108 102-216 58-186 (203)
101 COG1194 MutY A/G-specific DNA 96.9 0.0054 1.2E-07 58.5 9.4 73 60-142 197-273 (342)
102 PRK13910 DNA glycosylase MutY; 96.8 0.012 2.6E-07 55.4 11.1 65 60-138 151-218 (289)
103 KOG4432 Uncharacterized NUDIX 96.7 0.008 1.7E-07 55.9 8.3 112 106-217 228-376 (405)
104 PF13869 NUDIX_2: Nucleotide h 96.6 0.0045 9.8E-08 54.3 6.0 70 92-162 29-99 (188)
105 KOG0142 Isopentenyl pyrophosph 94.0 0.071 1.5E-06 47.1 4.2 106 107-217 52-183 (225)
106 KOG1689 mRNA cleavage factor I 92.6 0.38 8.3E-06 41.4 6.3 63 96-159 59-122 (221)
107 KOG4548 Mitochondrial ribosoma 91.9 0.64 1.4E-05 42.5 7.2 92 121-216 140-246 (263)
108 PF14443 DBC1: DBC1 84.2 2.8 6.1E-05 34.5 5.5 44 121-164 9-60 (126)
109 KOG4313 Thiamine pyrophosphoki 59.8 22 0.00049 32.7 5.6 92 121-215 149-256 (306)
110 COG4111 Uncharacterized conser 53.8 1E+02 0.0022 28.6 8.7 55 115-173 32-87 (322)
111 PF03487 IL13: Interleukin-13; 44.8 21 0.00045 23.3 2.1 22 137-158 15-36 (43)
112 PF07026 DUF1317: Protein of u 35.4 64 0.0014 22.9 3.5 31 122-155 13-43 (60)
113 PF12860 PAS_7: PAS fold 27.2 41 0.00089 26.1 1.7 42 110-152 6-47 (115)
No 1
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=100.00 E-value=1.8e-43 Score=324.03 Aligned_cols=293 Identities=45% Similarity=0.692 Sum_probs=239.3
Q ss_pred CCCCchhHHHhhhhhhhccCChhhhhchHHHHHHHhhhheeeeeCCccCCCCCCcchHHHHHHHHhCCCCcccccccchh
Q 020742 15 GGLPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHID 94 (322)
Q Consensus 15 ~~~~~~~~l~dl~~Rfi~n~p~~~~~~~~rl~f~ie~a~w~y~d~~~~~~p~l~~~~l~~f~~~l~~~~~~l~~~~~~~~ 94 (322)
...++.++|||||+|||+|+|.|+++++||+||+||+|||||+||.....|++ .|+.++||...++
T Consensus 4 ~~~~~~~~L~dl~~rfi~n~p~e~q~S~Er~~f~ve~a~w~y~d~~~~ndpsl--------------~c~~~~~~~~~~~ 69 (348)
T KOG2937|consen 4 NNTSSDRILDDLLSRFILNCPNEDQSSVERPLFSVEKALWFYEDFINKNDPSL--------------QCPLLWPWKNEKD 69 (348)
T ss_pred ccchHHHHHHHHHHHHHhcCChhhhhhhhcchHHHHHHHHHHHHHHhcCCccc--------------CCccccchhhHHH
Confidence 44667899999999999999999999999999999999999999995555544 8999999999999
Q ss_pred HHHhhhcCCcccccEEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeec
Q 020742 95 DIFKDFTSYKVRVPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK 174 (322)
Q Consensus 95 ~~~~~~~~y~~~v~v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~ 174 (322)
+.|..|..|+.++|+.|++++++...++|||+++.+..|.||.|++.++|+..+||+|||.||||.+....+.-..+++.
T Consensus 70 e~~~~f~~yk~~iPv~ga~ild~~~sr~llv~g~qa~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~~~e~Ie~ 149 (348)
T KOG2937|consen 70 EAFVDFAPYKARIPVRGAIILDEKRSRCLLVKGWQASSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQDNEGIET 149 (348)
T ss_pred HHHHhhccccCCCCCchHhhhhhhhhhhheeeceecccccccCccccccchhhhcchhcccchhhcCHHHHhccccCccc
Confidence 99999999999999999999999988999999999777999999999999999999999999999999987776777888
Q ss_pred ccCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEecccccccCCCccchhhhh-hhhhhhhhhHHHHHHHHHhcCCCCC
Q 020742 175 IFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTG-LKLYMVAPFLASLKKWISAHKPSIA 253 (322)
Q Consensus 175 ~~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~~~~~~~~~~~~-~~~~~v~pf~~~L~~wi~~~~~~~~ 253 (322)
.+.++.+++|++.++..++.+.+....|++.+.|+.++++....+....++... .+.||+.|+++.++.|+.+....+.
T Consensus 150 nI~dq~~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l~~t~~~s~~k~~~~~dk~~~~~~~l~vlkk~~~k~~~~va 229 (348)
T KOG2937|consen 150 NIRDQLVRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHLVPTDKKSGPKGVKSRDKNYMVCPFLRVLKKWILKADEVVA 229 (348)
T ss_pred chhhceeeeeeeccceeeeecchhhhccccceeeeehhhhcccccccCCCccccchhhcccchHHHHHHHHHHhccchhh
Confidence 888999999999999999999999999999999999999955333333344443 5789999999999999998877666
Q ss_pred CCCCCCCCccceeeccCCCCCccceeecccc----------------------------ccCCC----------------
Q 020742 254 PKHDMPLKGVCVWKAKNNSIGSNTIALESQL----------------------------TKVAS---------------- 289 (322)
Q Consensus 254 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~----------------------------~~~~~---------------- 289 (322)
..+..+....++|.+-.+..+..+..++++. ..|+.
T Consensus 230 k~~e~~~~~~tl~~~~t~v~~d~~~~aqS~~~~~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~~s~~~~n~k~s~f~ 309 (348)
T KOG2937|consen 230 KFPEKKSTVPTLGAALTDVEMDHVVTAQSYFAKPENWTFPKGKISRGEKPRDASIRSTFEEPGFPFGSYPEKNKKFSRFI 309 (348)
T ss_pred cCcccCccchhHHhhhhccccccceeecccccccccccCcccccccCCccccchhhhcCCCcCCcccccchhcccccccc
Confidence 5555555555555444332222221111111 11111
Q ss_pred ------CCCCCCCCCCCCccccccCHHHHHHHHHhccC
Q 020742 290 ------DSQPPDTGPGKSFRNFRFDTAAILQAMEAGFC 321 (322)
Q Consensus 290 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (322)
..+-....++.+|-++++....|||.++.|++
T Consensus 310 ~nt~~~l~~i~n~~~~~s~~~~kk~qs~~lq~~~~~n~ 347 (348)
T KOG2937|consen 310 NNTKVRLYHIKNSKKPDSNVSSKKNQSQILQRIRSGNS 347 (348)
T ss_pred cCCcceeeeccccCCCccccccccchhhHHHhhhhccC
Confidence 22333456677888999999999999999987
No 2
>PF05026 DCP2: Dcp2, box A domain; InterPro: IPR007722 This presumed domain is always found to the N-terminal side of the NUDIX hydrolase domain IPR000086 from INTERPRO. This domain appears to be specific to mRNA decapping protein 2 P53550 from SWISSPROT and its close homologues. This region has been termed Box A [].; GO: 0003723 RNA binding, 0016787 hydrolase activity, 0030145 manganese ion binding; PDB: 2QKM_H 2A6T_B 2QKL_B.
Probab=99.97 E-value=8.1e-33 Score=211.08 Aligned_cols=85 Identities=54% Similarity=1.027 Sum_probs=75.6
Q ss_pred hhHHHhhhhhhhccCChhhhhchHHHHHHHhhhheeeeeCCccCCCCCCcchHHHHHHHHhCCCCcccccccchhHHHhh
Q 020742 20 QELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKD 99 (322)
Q Consensus 20 ~~~l~dl~~Rfi~n~p~~~~~~~~rl~f~ie~a~w~y~d~~~~~~p~l~~~~l~~f~~~l~~~~~~l~~~~~~~~~~~~~ 99 (322)
++||||||+|||+|+|++|+++++|||||||+|||||+||+++++|+||++++++|+..|+++|+.++++..++++++++
T Consensus 1 ~~iLdDL~~RFI~N~P~eel~~~eRl~FqiE~AhWfY~Df~~~~~p~Lp~~~lk~F~~~if~~cp~L~~~~~~~~~~~~~ 80 (85)
T PF05026_consen 1 EEILDDLCSRFILNLPEEELSSFERLCFQIEEAHWFYEDFYREQNPSLPSMSLKEFAKQIFQHCPLLRPFTGNHDEALKK 80 (85)
T ss_dssp -HHHHHHHHHHTTTS-CCCST-HHHHHHHHHHHHHHHHHTTTTTTTTS----HHHHHHHHHTT-GHHCCCCCHCHHHHHH
T ss_pred CcHHHHHHHHHHhcCCHHHHccHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCHHHHHHHHHHHCHhHHHhhccHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCc
Q 020742 100 FTSYK 104 (322)
Q Consensus 100 ~~~y~ 104 (322)
|++||
T Consensus 81 f~~YK 85 (85)
T PF05026_consen 81 FKKYK 85 (85)
T ss_dssp HHHHS
T ss_pred HHccC
Confidence 99986
No 3
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.93 E-value=1.5e-25 Score=189.74 Aligned_cols=144 Identities=53% Similarity=0.987 Sum_probs=110.5
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeEEEEEEEE
Q 020742 107 VPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYII 186 (322)
Q Consensus 107 v~v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~~~~~y~~ 186 (322)
+|++|+|++++++++|||+|++..+.|+||||+++.|||+.+||+||++||||+++..+.....+.........+++|++
T Consensus 1 ~p~~gaii~~~~~~~vLLvr~~~~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~~~~~~~~~~~~~~~~~f~~ 80 (145)
T cd03672 1 IPVYGAIILNEDLDKVLLVKGWKSKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYIDKDDYIELIIRGQNVKLYIV 80 (145)
T ss_pred CCeeEEEEEeCCCCEEEEEEecCCCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccccceeeecccCCcEEEEEEE
Confidence 57899999998656999999988779999999999999999999999999999998764433334333344456778877
Q ss_pred EeecCCCCCCCCCccceeeEEEEecccccccCCCccchhhhhhhhhhhhhhHHHHHHHHHhcCCC
Q 020742 187 AGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKPS 251 (322)
Q Consensus 187 ~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~~~~~~~~~~~~~~~~~v~pf~~~L~~wi~~~~~~ 251 (322)
..........+...+|+.++.|+++++++++.... ..++....|.++.||+.+|++|+.+++.+
T Consensus 81 ~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (145)
T cd03672 81 PGVPEDTPFEPKTRKEISKIEWFDIKDLPTKKNKK-IPGLNSNKFFMVIPFIKPLKKWINRQKGK 144 (145)
T ss_pred ecCCCCcccCcCChhhhheEEEeeHHHhhhhhhhc-cccccccceEEEhHHHHHHHHHHHHhhcC
Confidence 66554433334445789999999999999853321 12334446789999999999999998764
No 4
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.79 E-value=1.4e-18 Score=142.86 Aligned_cols=107 Identities=23% Similarity=0.347 Sum_probs=74.9
Q ss_pred cEEEEEEEeCCCCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeEEEEEEE
Q 020742 108 PVTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYI 185 (322)
Q Consensus 108 ~v~g~Iv~~~~~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~~~~~y~ 185 (322)
..++++|++++ ++|||++++. .+.|.+|||+++.|||+.+||+||++||||+.+.....+..............+|+
T Consensus 3 ~~~~~~v~~~~-~~vLl~~r~~~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (127)
T cd04670 3 VGVGGLVLNEK-NEVLVVQERNKTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHAHPGAFGKSDLYF 81 (127)
T ss_pred eEEEEEEEcCC-CeEEEEEccCCCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeEEEEEEecCCCCcCceeEEE
Confidence 45677888776 4999999877 79999999999999999999999999999999875443332211111112223333
Q ss_pred EEeecC-CCCCCCCCccceeeEEEEecccccc
Q 020742 186 IAGVRD-DTAFAPQTKKEISEIAWQRLDELQP 216 (322)
Q Consensus 186 ~~~~~~-~~~~~~~~~~Ei~~~~Wv~ldeL~~ 216 (322)
++.+.. .... ..+.+|+.++.|++++++.+
T Consensus 82 ~~~~~~~~~~~-~~~~~E~~~~~w~~~~el~~ 112 (127)
T cd04670 82 ICRLKPLSFDI-NFDTSEIAAAKWMPLEEYIS 112 (127)
T ss_pred EEEEccCcCcC-CCChhhhheeEEEcHHHHhc
Confidence 333332 2121 23467888999999999976
No 5
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.77 E-value=4.4e-18 Score=138.00 Aligned_cols=105 Identities=22% Similarity=0.251 Sum_probs=80.0
Q ss_pred EEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCccc-ceeeeeeeeecc-cCeEEEEEEEE
Q 020742 109 VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS-KLLNKDEFIEKI-FGQQRVRLYII 186 (322)
Q Consensus 109 v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~-~l~~~~~~~~~~-~~~~~~~~y~~ 186 (322)
.+.++++++++ ++||+++...+.|.+|||+++.||++.+||+||++||||+.+. ....+..+.... .....+.+|.+
T Consensus 2 ~~~~~i~~~~~-~vLL~~r~~~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 80 (120)
T cd04680 2 GARAVVTDADG-RVLLVRHTYGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAELLGVYYHSASGSWDHVIVFRA 80 (120)
T ss_pred ceEEEEECCCC-eEEEEEECCCCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCccccccceEEEEecCCCCCceEEEEEEe
Confidence 46778888764 9999998776799999999999999999999999999999998 655544433221 23455666766
Q ss_pred EeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 187 AGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 187 ~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
....... ....+|+.++.|++++++++.
T Consensus 81 ~~~~~~~---~~~~~E~~~~~w~~~~~l~~~ 108 (120)
T cd04680 81 RADTQPV---IRPSHEISEARFFPPDALPEP 108 (120)
T ss_pred cccCCCc---cCCcccEEEEEEECHHHCccc
Confidence 5443321 335688999999999999873
No 6
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=1.3e-17 Score=137.39 Aligned_cols=109 Identities=23% Similarity=0.351 Sum_probs=79.6
Q ss_pred cEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee--cccCeEEEE
Q 020742 108 PVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE--KIFGQQRVR 182 (322)
Q Consensus 108 ~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~--~~~~~~~~~ 182 (322)
.++++||+++++ ++||++|.. ++.|.+|||+++.||++.+||+||++||||+++..+..+..+.. .....+.+.
T Consensus 3 ~~v~~ii~~~~~-~iLl~~r~~~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 81 (129)
T cd04678 3 VGVGVFVLNPKG-KVLLGKRKGSHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTNDVFEEEGKHYVT 81 (129)
T ss_pred eEEEEEEECCCC-eEEEEeccCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccceEEEEEEeEEeCCCCcEEEE
Confidence 356788888764 999999874 78999999999999999999999999999999877555443322 122334555
Q ss_pred EEEEEeecCCC-CCCCCCccceeeEEEEeccccccc
Q 020742 183 LYIIAGVRDDT-AFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 183 ~y~~~~~~~~~-~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
+|+.+...... .....+.+|+.+++|++++++..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 117 (129)
T cd04678 82 IFVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV 117 (129)
T ss_pred EEEEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc
Confidence 55555554432 111114567889999999999974
No 7
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=5.9e-18 Score=137.79 Aligned_cols=101 Identities=18% Similarity=0.300 Sum_probs=76.1
Q ss_pred EEEEEEeCCCCEEEEEEeeC-----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeEEEEEE
Q 020742 110 TGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLY 184 (322)
Q Consensus 110 ~g~Iv~~~~~~kvLLvrr~~-----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~~~~~y 184 (322)
++++++++ ++|||+||.+ .+.|+||||+++.||++.+||+||++||||+++..+..+..+.........+++|
T Consensus 3 v~~vi~~~--~~vLL~rR~~~~~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~ 80 (117)
T cd04691 3 VVGVLFSD--DKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYLCSLYHPTSELQLLHYY 80 (117)
T ss_pred EEEEEEEC--CEEEEEEeCCCCCCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccceEEEEEeccCCCeEEEEEE
Confidence 45555555 3999999864 5799999999999999999999999999999976665555544332234556667
Q ss_pred EEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 185 IIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 185 ~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
.+....+. + ..+|+.++.|+++++++..
T Consensus 81 ~~~~~~~~----~-~~~E~~~~~W~~~~~l~~~ 108 (117)
T cd04691 81 VVTFWQGE----I-PAQEAAEVHWMTANDIVLA 108 (117)
T ss_pred EEEEecCC----C-CcccccccEEcCHHHcchh
Confidence 76554432 2 2378899999999999874
No 8
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.76 E-value=8.1e-18 Score=141.73 Aligned_cols=113 Identities=23% Similarity=0.358 Sum_probs=82.9
Q ss_pred CCcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeec-ccC
Q 020742 102 SYKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEK-IFG 177 (322)
Q Consensus 102 ~y~~~v~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~-~~~ 177 (322)
.+.....+++++|++.++ ++||+++.. .+.|+||||++++||++.+||+||++||||+++.....+..+... ..+
T Consensus 8 ~~~~~~~av~~vv~~~~~-~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~ 86 (142)
T cd04700 8 HVEVEARAAGAVILNERN-DVLLVQEKGGPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTYLGRFDDG 86 (142)
T ss_pred CcceeeeeEEEEEEeCCC-cEEEEEEcCCCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeeccEEEEEEEEEcCCC
Confidence 344456788889998764 899998764 589999999999999999999999999999998876555544321 112
Q ss_pred -eEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 178 -QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 178 -~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
....++|++...... ..+...+|+.++.|++++++.++
T Consensus 87 ~~~~~~~f~~~~~~~~--~~~~~~~E~~~~~w~~~~el~~~ 125 (142)
T cd04700 87 VLVLRHVWLAEPEGQT--LAPKFTDEIAEASFFSREDVAQL 125 (142)
T ss_pred cEEEEEEEEEEecCCc--cccCCCCCEEEEEEECHHHhhhc
Confidence 233455655443322 22334579999999999999985
No 9
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=9.2e-18 Score=137.69 Aligned_cols=106 Identities=23% Similarity=0.325 Sum_probs=76.3
Q ss_pred cEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeee--ecc-cCeEEE
Q 020742 108 PVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFI--EKI-FGQQRV 181 (322)
Q Consensus 108 ~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~--~~~-~~~~~~ 181 (322)
.+|+++|++.++ +|||++|.+ .+.|.+|||+++.||++.+||+||++||||+++.....+.... ... ..+...
T Consensus 3 ~~~~~~i~~~~~-~vLL~~r~~~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
T cd04679 3 VGCGAAILRDDG-KLLLVKRLRAPEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPPQHWVA 81 (125)
T ss_pred eEEEEEEECCCC-EEEEEEecCCCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccceEEEEEeecccCCCCeEEE
Confidence 457788887764 999999875 5899999999999999999999999999999987644433221 111 222333
Q ss_pred EEEEEEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742 182 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP 216 (322)
Q Consensus 182 ~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~ 216 (322)
.+|++....+. . ...+.+|+.++.|+++++++.
T Consensus 82 ~~f~~~~~~~~-~-~~~~~~E~~~~~W~~~~~l~~ 114 (125)
T cd04679 82 PVYLAENFSGE-P-RLMEPDKLLELGWFALDALPQ 114 (125)
T ss_pred EEEEEeecCCc-c-ccCCCccccEEEEeCHHHCCc
Confidence 44555443332 1 223457899999999999986
No 10
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.76 E-value=9.2e-18 Score=138.11 Aligned_cols=105 Identities=22% Similarity=0.285 Sum_probs=76.6
Q ss_pred EEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeEEEEEEE
Q 020742 109 VTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYI 185 (322)
Q Consensus 109 v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~~~~~y~ 185 (322)
++++++++.+ ++|||+++.+ .+.|.+|||+++.||++.+||+||++||||+++.....+... .. .......+|.
T Consensus 2 ~~~~vv~~~~-~~vLl~~r~~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~~~~~~~-~~-~~~~~~~~f~ 78 (123)
T cd04671 2 IVAAVILNNQ-GEVLLIQEAKRSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVE-EQ-GGSWFRFVFT 78 (123)
T ss_pred EEEEEEEcCC-CEEEEEEecCCCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecceEEEEE-cc-CCeEEEEEEE
Confidence 5778888876 4999999875 689999999999999999999999999999999765443322 11 2334455565
Q ss_pred EEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742 186 IAGVRDDTAFAPQTKKEISEIAWQRLDELQP 216 (322)
Q Consensus 186 ~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~ 216 (322)
+....+.......+..|+.+++|+++++++.
T Consensus 79 a~~~~g~~~~~~~~~~e~~~~~W~~~~el~~ 109 (123)
T cd04671 79 GNITGGDLKTEKEADSESLQARWYSNKDLPL 109 (123)
T ss_pred EEEeCCeEccCCCCCcceEEEEEECHHHCCC
Confidence 5544433222223456788999999999954
No 11
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.76 E-value=1e-17 Score=139.45 Aligned_cols=109 Identities=22% Similarity=0.356 Sum_probs=82.7
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEEE
Q 020742 107 VPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRV 181 (322)
Q Consensus 107 v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~~ 181 (322)
.+++++++++++ +++||+++.+ ++.|++|||+++.||++.+||+||++||||+++..+..+..+.. .......+
T Consensus 2 ~~~v~v~~~~~~-~~iLl~~~~~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 80 (137)
T cd03424 2 PDAVAVLPYDDD-GKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEKLGSFYPSPGFSDERI 80 (137)
T ss_pred CCEEEEEEEcCC-CeEEEEEeeecCCCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccceEEEeeEecCCcccCccE
Confidence 357788888887 4999998765 46899999999999999999999999999999987666665433 22334456
Q ss_pred EEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 182 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 182 ~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
.+|++......... ...+.|+.+++|++++++.++
T Consensus 81 ~~~~~~~~~~~~~~-~~~~~E~~~~~w~~~~el~~~ 115 (137)
T cd03424 81 HLFLAEDLSPGEEG-LLDEGEDIEVVLVPLDEALEL 115 (137)
T ss_pred EEEEEEcccccccC-CCCCCCeeEEEEecHHHHHHH
Confidence 67766544332111 234678999999999999874
No 12
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.75 E-value=2.6e-17 Score=139.22 Aligned_cols=109 Identities=24% Similarity=0.455 Sum_probs=78.3
Q ss_pred cEEEEEEEeCCCCEEEEEEeeC-CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeee------eeecc-----
Q 020742 108 PVTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDE------FIEKI----- 175 (322)
Q Consensus 108 ~v~g~Iv~~~~~~kvLLvrr~~-~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~------~~~~~----- 175 (322)
+++++|++++++ +|||++|.. .+.|.+|||+++.||++.+||+||++||||+++.....+.. |....
T Consensus 4 ~~v~~ii~~~~~-~vLL~~r~~~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~~~~~y~~~~~~~~~ 82 (147)
T cd03671 4 PNVGVVLFNEDG-KVFVGRRIDTPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPELKLK 82 (147)
T ss_pred ceEEEEEEeCCC-EEEEEEEcCCCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcCCeeEeeChhhhhcc
Confidence 578888888774 999999987 46999999999999999999999999999999765333322 11110
Q ss_pred -----cCeEEEEEEEEEeecCCCCCCCC--CccceeeEEEEeccccccc
Q 020742 176 -----FGQQRVRLYIIAGVRDDTAFAPQ--TKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 176 -----~~~~~~~~y~~~~~~~~~~~~~~--~~~Ei~~~~Wv~ldeL~~~ 217 (322)
...+..++|++............ +.+|+.++.|+++++++++
T Consensus 83 ~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~ 131 (147)
T cd03671 83 IWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDL 131 (147)
T ss_pred ccCCcCCCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHh
Confidence 12344566655443322222222 3579999999999999974
No 13
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.75 E-value=7.6e-18 Score=138.41 Aligned_cols=108 Identities=23% Similarity=0.407 Sum_probs=79.9
Q ss_pred cEEEEEEEeCCC--CEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeee--ecc---cCeEE
Q 020742 108 PVTGAIILDETY--ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFI--EKI---FGQQR 180 (322)
Q Consensus 108 ~v~g~Iv~~~~~--~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~--~~~---~~~~~ 180 (322)
.++++|+++.+. ++|||+++.+.+.|.||||+++.||++.+||.||++||||+++..+..+..+. ... .....
T Consensus 2 ~~a~~ii~~~~~~~~~vLl~~~~~~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T cd03673 2 LAAGGVVFRGSDGGIEVLLIHRPRGDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGKRVHKT 81 (131)
T ss_pred eeEEEEEEEccCCCeEEEEEEcCCCCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEecceEEEEEEeccCCCCCcceE
Confidence 467888877642 49999999888899999999999999999999999999999987654444321 111 23445
Q ss_pred EEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 181 ~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
+.+|.+....... .....+|+.++.|++++++.++
T Consensus 82 ~~~~~~~~~~~~~--~~~~~~E~~~~~W~~~~el~~~ 116 (131)
T cd03673 82 VHWWLMRALGGEF--TPQPDEEVDEVRWLPPDEARDR 116 (131)
T ss_pred EEEEEEEEcCCCc--ccCCCCcEEEEEEcCHHHHHHH
Confidence 5666665443332 2225688999999999999873
No 14
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75 E-value=2.1e-17 Score=134.36 Aligned_cols=104 Identities=19% Similarity=0.331 Sum_probs=73.7
Q ss_pred EEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCccc--ceeeeeeeeec-ccCeEEEE
Q 020742 110 TGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS--KLLNKDEFIEK-IFGQQRVR 182 (322)
Q Consensus 110 ~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~--~l~~~~~~~~~-~~~~~~~~ 182 (322)
++++|.+++ +|||+||.+ .+.|++|||+++.||++.+||+||++||||+.+. .+..+..+... ....+.+.
T Consensus 3 v~~vi~~~~--~vLL~~r~~~~~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~ 80 (120)
T cd04683 3 VYVLLRRDD--EVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDIESRIG 80 (120)
T ss_pred EEEEEEECC--EEEEEEccCCCCCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEEecCCCCceEEE
Confidence 456666653 899999875 5799999999999999999999999999999886 44444433221 22234455
Q ss_pred EEEEEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742 183 LYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP 216 (322)
Q Consensus 183 ~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~ 216 (322)
+|+.+...... ......+|+.++.|+++++|+.
T Consensus 81 ~~f~~~~~~~~-~~~~~~~e~~~~~W~~~~~l~~ 113 (120)
T cd04683 81 LFFTVRRWSGE-PRNCEPDKCAELRWFPLDALPD 113 (120)
T ss_pred EEEEEEeecCc-cccCCCCcEeeEEEEchHHCcc
Confidence 55544432221 1223457889999999999987
No 15
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.75 E-value=1.3e-17 Score=153.60 Aligned_cols=165 Identities=18% Similarity=0.170 Sum_probs=110.2
Q ss_pred hhhccCChhhhhchHHHHHHHhhhheeeeeCCccCCCCCCcchHHHHHHHHhCCCCcccccccchhHHHhhhcCCccccc
Q 020742 29 RFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVP 108 (322)
Q Consensus 29 Rfi~n~p~~~~~~~~rl~f~ie~a~w~y~d~~~~~~p~l~~~~l~~f~~~l~~~~~~l~~~~~~~~~~~~~~~~y~~~v~ 108 (322)
|-+..+|+++..... .+.+..+|+....+|+++..--.. ...-....+..|. ...|...-+
T Consensus 73 r~~~~~~~~~~~~~~---~a~~l~~w~~~~~fC~~CG~~~~~-~~~~~~~~C~~c~---------------~~~yp~~~p 133 (256)
T PRK00241 73 RQLLDLDDGLFQLLG---RAVQLAEFYRSHRFCGYCGHPMHP-SKTEWAMLCPHCR---------------ERYYPRIAP 133 (256)
T ss_pred hhhccCCHHHHHHHH---HHHHHHHHhhcCccccccCCCCee-cCCceeEECCCCC---------------CEECCCCCC
Confidence 333567777655433 478889999998777764321111 0111111222232 245665566
Q ss_pred EEEEEEEeCCCCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeEEEEEEEE
Q 020742 109 VTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYII 186 (322)
Q Consensus 109 v~g~Iv~~~~~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~~~~~y~~ 186 (322)
++.++|.++ +++||+++.+ .+.|++|||+++.|||+++||+||++||||+++..+..+.... ..+.+..+..|.+
T Consensus 134 aViv~V~~~--~~iLL~rr~~~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~~~~s~~-~~~p~~lm~~f~a 210 (256)
T PRK00241 134 CIIVAVRRG--DEILLARHPRHRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLRYVGSQP-WPFPHSLMLGFHA 210 (256)
T ss_pred EEEEEEEeC--CEEEEEEccCCCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeEEEEeEe-ecCCCeEEEEEEE
Confidence 666666655 4999999876 6899999999999999999999999999999998776665432 2334456666766
Q ss_pred EeecCCCCCCCCCccceeeEEEEecccccccC
Q 020742 187 AGVRDDTAFAPQTKKEISEIAWQRLDELQPAS 218 (322)
Q Consensus 187 ~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~~ 218 (322)
....+. . ..+.+|+.++.|+++++++.+.
T Consensus 211 ~~~~~~--~-~~~~~Ei~~a~W~~~del~~lp 239 (256)
T PRK00241 211 DYDSGE--I-VFDPKEIADAQWFRYDELPLLP 239 (256)
T ss_pred EecCCc--c-cCCcccEEEEEEECHHHCcccC
Confidence 544332 2 2345799999999999998753
No 16
>PLN02325 nudix hydrolase
Probab=99.74 E-value=7e-17 Score=136.49 Aligned_cols=112 Identities=21% Similarity=0.279 Sum_probs=76.6
Q ss_pred CcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeee--e--ecc
Q 020742 103 YKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF--I--EKI 175 (322)
Q Consensus 103 y~~~v~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~--~--~~~ 175 (322)
|+.....++++|+++ ++|||+||.. .+.|.+|||+++.||++.+||+||++||||+++.....+..+ . ...
T Consensus 5 ~~~p~~~v~~vi~~~--~~vLL~rr~~~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~~~l~~~~~~~~~~~ 82 (144)
T PLN02325 5 EPIPRVAVVVFLLKG--NSVLLGRRRSSIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKIELLTVTNNVFLEEP 82 (144)
T ss_pred CCCCeEEEEEEEEcC--CEEEEEEecCCCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEecceeecCC
Confidence 333444556666665 3999999876 589999999999999999999999999999998765443321 1 112
Q ss_pred cCeEEEEEEEEEeecCC-CCCCCCCccceeeEEEEecccccc
Q 020742 176 FGQQRVRLYIIAGVRDD-TAFAPQTKKEISEIAWQRLDELQP 216 (322)
Q Consensus 176 ~~~~~~~~y~~~~~~~~-~~~~~~~~~Ei~~~~Wv~ldeL~~ 216 (322)
...+.+.+|+.+..... ........+|+.+++|+++++|+.
T Consensus 83 ~~~~~i~~~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~ 124 (144)
T PLN02325 83 KPSHYVTVFMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPE 124 (144)
T ss_pred CCcEEEEEEEEEEECCCCCCCCcCCchhcCceEEEChHHCCh
Confidence 22344555554444322 111223345678899999999987
No 17
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.73 E-value=5.3e-17 Score=139.05 Aligned_cols=109 Identities=20% Similarity=0.335 Sum_probs=78.5
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeC-CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeee------e-------
Q 020742 107 VPVTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF------I------- 172 (322)
Q Consensus 107 v~v~g~Iv~~~~~~kvLLvrr~~-~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~------~------- 172 (322)
.++++++|++.++ +|||+|+.. ++.|++|||+++.||++.+||.||+.||||+++..+..+..+ .
T Consensus 8 ~~~v~~~i~~~~g-~vLL~~r~~~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~y~~~~~~~~ 86 (156)
T PRK00714 8 RPNVGIILLNRQG-QVFWGRRIGQGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDLPKRLVR 86 (156)
T ss_pred CCeEEEEEEecCC-EEEEEEEcCCCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcCCeEEecCcHHHhh
Confidence 3477888888774 999999977 589999999999999999999999999999998654433321 0
Q ss_pred --ecccCeEEEEEEEEEeecCCCCC--CCCCccceeeEEEEecccccc
Q 020742 173 --EKIFGQQRVRLYIIAGVRDDTAF--APQTKKEISEIAWQRLDELQP 216 (322)
Q Consensus 173 --~~~~~~~~~~~y~~~~~~~~~~~--~~~~~~Ei~~~~Wv~ldeL~~ 216 (322)
......+..++|++......... .+.+.+|+.+++|++++++++
T Consensus 87 ~~~~~~~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~ 134 (156)
T PRK00714 87 RSKGVYRGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLD 134 (156)
T ss_pred ccCCcccCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHH
Confidence 01111234556666543322222 222457999999999999987
No 18
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.73 E-value=7.3e-17 Score=133.80 Aligned_cols=105 Identities=19% Similarity=0.246 Sum_probs=72.8
Q ss_pred EEEEEEeCCCCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeee--eecccCeE-EEEEE
Q 020742 110 TGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF--IEKIFGQQ-RVRLY 184 (322)
Q Consensus 110 ~g~Iv~~~~~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~--~~~~~~~~-~~~~y 184 (322)
+++|+.+++ ++||++|.+ ++.|++|||+++.||++.+||.||++||||+++.....+..+ ........ ...+|
T Consensus 3 v~~ii~~~~--~vLlv~r~~~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~f 80 (134)
T cd03675 3 VAAVVERDG--RFLLVEEETDGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLRFAF 80 (134)
T ss_pred EEEEEEECC--EEEEEEEccCCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccceEEEEEEeecCCCCeeEEEEEE
Confidence 456666553 899999876 579999999999999999999999999999998764333322 21211222 22345
Q ss_pred EEEeecCCCCCCCCCccceeeEEEEecccccccC
Q 020742 185 IIAGVRDDTAFAPQTKKEISEIAWQRLDELQPAS 218 (322)
Q Consensus 185 ~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~~ 218 (322)
.+. +..... .....+|+.++.|++++++..+.
T Consensus 81 ~~~-~~~~~~-~~~~~~e~~~~~w~~~~el~~~~ 112 (134)
T cd03675 81 AAE-LLEHLP-DQPLDSGIVRAHWLTLEEILALA 112 (134)
T ss_pred EEE-ECCCCC-CCCCCCCceeeEEEeHHHHHhhh
Confidence 443 333221 12334688999999999999854
No 19
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.73 E-value=3.6e-17 Score=136.98 Aligned_cols=108 Identities=26% Similarity=0.356 Sum_probs=76.2
Q ss_pred cEEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeee------eeeeccc-----
Q 020742 108 PVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKD------EFIEKIF----- 176 (322)
Q Consensus 108 ~v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~------~~~~~~~----- 176 (322)
.++++++++++.++|||++|.+.+.|.+|||+++.||++.+||+||++||||+++..+.... .+.....
T Consensus 3 ~~~~~~v~~~~~~~vLLv~r~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (138)
T cd03674 3 FTASAFVVNPDRGKVLLTHHRKLGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGHPKRGV 82 (138)
T ss_pred EEEEEEEEeCCCCeEEEEEEcCCCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCCCCCCC
Confidence 46788888886359999998878899999999999999999999999999999876543321 1111111
Q ss_pred -CeE-EEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 177 -GQQ-RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 177 -~~~-~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
..+ ...+|.+....+.. .+...+|+.++.|++++++..+
T Consensus 83 ~~~~~~~~~y~~~~~~~~~--~~~~~~E~~~~~W~~~~el~~~ 123 (138)
T cd03674 83 PGHLHLDLRFLAVAPADDV--APPKSDESDAVRWFPLDELASL 123 (138)
T ss_pred CCcEEEEEEEEEEccCccc--cCCCCCcccccEEEcHHHhhhc
Confidence 122 33345554333221 2224678899999999999653
No 20
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.73 E-value=3.5e-17 Score=134.53 Aligned_cols=106 Identities=23% Similarity=0.272 Sum_probs=76.0
Q ss_pred EEEEEEEeCC--CCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccce-eeeeeeeeccc-----CeEE
Q 020742 109 VTGAIILDET--YERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL-LNKDEFIEKIF-----GQQR 180 (322)
Q Consensus 109 v~g~Iv~~~~--~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l-~~~~~~~~~~~-----~~~~ 180 (322)
++|+|+++.+ .+++||+++.+.+.|.||||+|+.||++.+||+||++||||+++... ..+..+..... .+..
T Consensus 2 ~~g~v~~~~~~~~~~vLLv~~~~~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~~~~l~~~~~~~~~~~~~~~~~ 81 (122)
T cd04666 2 QAGAIPYRETGGEVEVLLVTSRRTGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRPPRCE 81 (122)
T ss_pred EEEEEEEEEcCCceEEEEEEecCCCeEECCCCCcCCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeeecCCCCCceEE
Confidence 5678877654 34899999877789999999999999999999999999999988765 55555432211 1334
Q ss_pred EEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 181 ~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
+.+|.+. +.... ......++.++.|++++++..+
T Consensus 82 ~~~f~~~-~~~~~--~~~~~~e~~~~~W~~~~ea~~~ 115 (122)
T cd04666 82 VAVFPLE-VTEEL--DEWPEMHQRKRKWFSPEEAALL 115 (122)
T ss_pred EEEEEEE-Eeccc--cCCcccCceEEEEecHHHHHHh
Confidence 4445443 33322 1223456789999999999764
No 21
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=5.3e-17 Score=132.92 Aligned_cols=104 Identities=19% Similarity=0.301 Sum_probs=72.0
Q ss_pred EEEEEEeCCCCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeEEEEEEEEE
Q 020742 110 TGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIA 187 (322)
Q Consensus 110 ~g~Iv~~~~~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~~~~~y~~~ 187 (322)
+++|+++++ ++|||++|.+ .+.|+||||+++.||++.+||+||++||||+++.....+..+.. .+...++|.+.
T Consensus 3 ~~~ii~~~~-~~vLL~~r~~~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~~~~~~~~---~~~~~~~f~~~ 78 (121)
T cd04669 3 ASIVIINDQ-GEILLIRRIKPGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQ---NGRTEHYFLAR 78 (121)
T ss_pred eEEEEEeCC-CEEEEEEEecCCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeeeEEEEEee---CCcEEEEEEEE
Confidence 356666664 3999999876 47899999999999999999999999999999854332222211 22345666666
Q ss_pred eecCCCCCCC------CCccceeeEEEEeccccccc
Q 020742 188 GVRDDTAFAP------QTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 188 ~~~~~~~~~~------~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
...+...... .+..++.++.|+++++|+.+
T Consensus 79 ~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l 114 (121)
T cd04669 79 VISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETI 114 (121)
T ss_pred EECCeecCCCchhhcccCCCCceEEEEEEHHHcccC
Confidence 5543221100 11344667999999999874
No 22
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.73 E-value=4.7e-17 Score=137.49 Aligned_cols=107 Identities=21% Similarity=0.200 Sum_probs=75.1
Q ss_pred cEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccce--ee--eeeeee------c
Q 020742 108 PVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL--LN--KDEFIE------K 174 (322)
Q Consensus 108 ~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l--~~--~~~~~~------~ 174 (322)
.++++||++.++ +|||+||.. +|.|.+|||+++.|||+.+||+||++||||+++... .. ...+.. .
T Consensus 13 v~v~~vI~~~~g-~vLl~~R~~~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~~~l~~~~~~~~~~~~~~ 91 (144)
T cd03430 13 VSIDLIVENEDG-QYLLGKRTNRPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDNFFGD 91 (144)
T ss_pred EEEEEEEEeCCC-eEEEEEccCCCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccceEEEEEEEEeccccccC
Confidence 367788888764 999999864 789999999999999999999999999999988643 22 222111 1
Q ss_pred ccCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 175 IFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 175 ~~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
....+.+.+++.+...... .....+|+.+++|++++++++.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~~~W~~~~el~~~ 132 (144)
T cd03430 92 DFSTHYVVLGYVLKLSSNE--LLLPDEQHSEYQWLTSDELLAD 132 (144)
T ss_pred CCccEEEEEEEEEEEcCCc--ccCCchhccEeEEecHHHHhcC
Confidence 1222334443333333321 1334678999999999999863
No 23
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.73 E-value=4.4e-17 Score=133.71 Aligned_cols=105 Identities=24% Similarity=0.260 Sum_probs=74.9
Q ss_pred cEEEEEEEeCCCCEEEEEEeeC-CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeee--eeeee-cc---cCeEE
Q 020742 108 PVTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK--DEFIE-KI---FGQQR 180 (322)
Q Consensus 108 ~v~g~Iv~~~~~~kvLLvrr~~-~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~--~~~~~-~~---~~~~~ 180 (322)
.+++++|+++++ +|||+|+.. .+.|++|||+++.|||+.+||+||++||||+++.....+ ..+.. .. ..+..
T Consensus 3 ~~v~~~i~~~~~-~iLL~r~~~~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (125)
T cd04696 3 VTVGALIYAPDG-RILLVRTTKWRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHKPAHFV 81 (125)
T ss_pred cEEEEEEECCCC-CEEEEEccCCCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccceEEEEEEeccCCCCCccEEE
Confidence 567888888664 999999765 789999999999999999999999999999988654322 22211 11 12233
Q ss_pred EEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 181 ~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
+..|.+..... . ....+|+.+++|++++++.++
T Consensus 82 ~~~~~~~~~~~--~--~~~~~e~~~~~W~~~~el~~~ 114 (125)
T cd04696 82 LFDFFARTDGT--E--VTPNEEIVEWEWVTPEEALDY 114 (125)
T ss_pred EEEEEEEecCC--c--ccCCcccceeEEECHHHHhcC
Confidence 34455543221 1 233478899999999999874
No 24
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.73 E-value=6.2e-17 Score=139.02 Aligned_cols=106 Identities=18% Similarity=0.219 Sum_probs=73.2
Q ss_pred cEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccc----eeeeeeee-ecc----
Q 020742 108 PVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK----LLNKDEFI-EKI---- 175 (322)
Q Consensus 108 ~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~----l~~~~~~~-~~~---- 175 (322)
.++++||.++. ++|||+||.. .|.|+||||+|+.|||+.+||+||++||||+++.. +..+..+. ...
T Consensus 18 ~~v~~vI~~~~-g~VLL~kR~~~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~ 96 (159)
T PRK15434 18 ISLDFIVENSR-GEFLLGKRTNRPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITAGQFYGVWQHFYDDNFSGT 96 (159)
T ss_pred EEEEEEEECCC-CEEEEEEccCCCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEeecccccCCC
Confidence 46778888765 4999999864 58999999999999999999999999999998642 22221111 111
Q ss_pred -cCeE-EEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 176 -FGQQ-RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 176 -~~~~-~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
...+ .+.+|.+....+. ......|+.+++|+++++++..
T Consensus 97 ~~~~~~i~~~f~~~~~~g~---~~~~~~E~~~~~W~~~~el~~~ 137 (159)
T PRK15434 97 DFTTHYVVLGFRLRVAEED---LLLPDEQHDDYRWLTPDALLAS 137 (159)
T ss_pred ccceEEEEEEEEEEecCCc---ccCChHHeeEEEEEeHHHhhhc
Confidence 1123 3334444433222 1223568999999999999873
No 25
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=4.8e-17 Score=134.12 Aligned_cols=104 Identities=21% Similarity=0.401 Sum_probs=76.6
Q ss_pred EEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee----cccCeEEE
Q 020742 109 VTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE----KIFGQQRV 181 (322)
Q Consensus 109 v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~----~~~~~~~~ 181 (322)
+++++|+++++ ++||++|.. .+.|.+|||+++.||++.+||.||++||||+++..+..+..+.. .....+.+
T Consensus 3 av~~~i~~~~~-~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (130)
T cd04681 3 AVGVLILNEDG-ELLVVRRAREPGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGMEYDTL 81 (130)
T ss_pred eEEEEEEcCCC-cEEEEEecCCCCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCcccceeEEEeecceeeeCCceeEEE
Confidence 46777888764 999999865 58999999999999999999999999999999887655543321 11222344
Q ss_pred EEEEEEeecCCCCCCCCCccceeeEEEEeccccc
Q 020742 182 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQ 215 (322)
Q Consensus 182 ~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~ 215 (322)
.+|+++...... ...+.+|+.++.|+++++|+
T Consensus 82 ~~~~~~~~~~~~--~~~~~~e~~~~~W~~~~el~ 113 (130)
T cd04681 82 DLFFVCQVDDKP--IVKAPDDVAELKWVVPQDIE 113 (130)
T ss_pred EEEEEEEeCCCC--CcCChHHhheeEEecHHHCC
Confidence 455555554332 12345789999999999986
No 26
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.72 E-value=6.3e-17 Score=132.37 Aligned_cols=106 Identities=21% Similarity=0.207 Sum_probs=75.5
Q ss_pred EEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeee--eec-c-c---Ce
Q 020742 109 VTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF--IEK-I-F---GQ 178 (322)
Q Consensus 109 v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~--~~~-~-~---~~ 178 (322)
.+++||+++ ++|||+++.+ .+.|.+|||+++.||++.+||+||++||||+++..+..+..+ ... . . .+
T Consensus 2 ~~~~ii~~~--~~vLl~~~~~~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (128)
T cd04684 2 GAYAVIPRD--GKLLLIQKNGGPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDAH 79 (128)
T ss_pred eeEEEEEeC--CEEEEEEccCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecceeeeEEEEEEECCCCCeecc
Confidence 456777776 3999999987 499999999999999999999999999999988764444332 111 1 1 13
Q ss_pred EEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 179 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 179 ~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
....+|.+........ .....+|..++.|++++++...
T Consensus 80 ~~~~~f~~~~~~~~~~-~~~~~~e~~~~~W~~~~~l~~~ 117 (128)
T cd04684 80 HLCVFYDARVVGGALP-VQEPGEDSHGAAWLPLDEAIER 117 (128)
T ss_pred EEEEEEEEEEecCccc-cCCCCCCceeeEEECHHHhhcc
Confidence 3445565544433211 1234567889999999999863
No 27
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=6.6e-17 Score=133.36 Aligned_cols=108 Identities=28% Similarity=0.338 Sum_probs=78.2
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeee-----ee---cccCe
Q 020742 107 VPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF-----IE---KIFGQ 178 (322)
Q Consensus 107 v~v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~-----~~---~~~~~ 178 (322)
.+++++++++.++ ++||++|...+.|.||||+|+.||++.+||+||++||||+++.....+..+ +. .....
T Consensus 7 ~~~~~~~v~~~~~-~vLL~~r~~~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (132)
T cd04677 7 LVGAGVILLNEQG-EVLLQKRSDTGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVKPNGDDEQ 85 (132)
T ss_pred ccceEEEEEeCCC-CEEEEEecCCCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeEEEEEecCCceeecCCCCcEE
Confidence 4566777777764 899999887789999999999999999999999999999998865444322 11 11112
Q ss_pred EEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 179 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 179 ~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
..+.+|++...... .. ....+|+.++.|+++++++.+
T Consensus 86 ~~~~~~~~~~~~~~-~~-~~~~~e~~~~~W~~~~e~~~~ 122 (132)
T cd04677 86 YIVTLYYVTKVFGG-KL-VPDGDETLELKFFSLDELPEL 122 (132)
T ss_pred EEEEEEEEEeccCC-cc-cCCCCceeeEEEEChhHCccc
Confidence 34455555544322 11 234678899999999999874
No 28
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.72 E-value=7.7e-17 Score=132.20 Aligned_cols=105 Identities=19% Similarity=0.248 Sum_probs=72.9
Q ss_pred EEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeee----ecccC-eEEEEEE
Q 020742 110 TGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFI----EKIFG-QQRVRLY 184 (322)
Q Consensus 110 ~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~----~~~~~-~~~~~~y 184 (322)
+++||++++ ++||+++...+.|.+|||+++.||++.+||+||++||||+++.....+..+. ..... +...++|
T Consensus 4 ~~~vi~~~~--~vLlv~~~~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~~~~~~~~f 81 (125)
T cd04689 4 ARAIVRAGN--KVLLARVIGQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTHEINHIF 81 (125)
T ss_pred EEEEEEeCC--EEEEEEecCCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeeccEEEEEEeeeeccCCceEEEEEEEE
Confidence 455555543 8999998777899999999999999999999999999999987654443321 11122 2334555
Q ss_pred EEEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742 185 IIAGVRDDTAFAPQTKKEISEIAWQRLDELQP 216 (322)
Q Consensus 185 ~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~ 216 (322)
.+..............+|+.++.|++++++..
T Consensus 82 ~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~ 113 (125)
T cd04689 82 AVESSWLASDGPPQADEDHLSFSWVPVSDLSL 113 (125)
T ss_pred EEEcccccccCCccCccceEEEEEccHHHccc
Confidence 55443322112233456789999999999754
No 29
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=1.2e-16 Score=131.77 Aligned_cols=107 Identities=23% Similarity=0.329 Sum_probs=72.3
Q ss_pred EEEEEEEeCCCCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccc--eeeeeeeeec------ccCe
Q 020742 109 VTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK--LLNKDEFIEK------IFGQ 178 (322)
Q Consensus 109 v~g~Iv~~~~~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~--l~~~~~~~~~------~~~~ 178 (322)
.+++||.+++ +|||+++.+ ++.|.+|||+++.||++.+||+||+.||||+.+.. +..+..+... ....
T Consensus 3 ~a~~iv~~~~--~vLl~~r~~~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~~ 80 (128)
T cd04687 3 SAKAVIIKND--KILLIKHHDDGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELPGHF 80 (128)
T ss_pred EEEEEEEECC--EEEEEEEEcCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCcEEEEEEEeccCccccCCCce
Confidence 4667777653 999999876 57899999999999999999999999999999875 3333333211 1123
Q ss_pred EEE-EEEEEEeecCCC-CCCCCCccceeeEEEEeccccccc
Q 020742 179 QRV-RLYIIAGVRDDT-AFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 179 ~~~-~~y~~~~~~~~~-~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
+.+ .+|.+....+.. ........+..+++|+++++++++
T Consensus 81 ~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~ 121 (128)
T cd04687 81 HQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDI 121 (128)
T ss_pred eEEEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCcc
Confidence 334 444444333221 111122345578999999999874
No 30
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.72 E-value=1.1e-16 Score=140.84 Aligned_cols=119 Identities=18% Similarity=0.264 Sum_probs=90.0
Q ss_pred cEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEEEE
Q 020742 108 PVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRVR 182 (322)
Q Consensus 108 ~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~~~ 182 (322)
.+++++.++++ ++|||+++++ ...|+||||.+|.||++.+||+||++||||+++..+..+..+.. +......++
T Consensus 48 ~~v~v~~~~~~-~~vlLvrq~r~~~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~~l~~~~~~~~~~~~~~~ 126 (185)
T PRK11762 48 GAVMIVPILDD-DTLLLIREYAAGTERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLTFLKELSLAPSYFSSKMN 126 (185)
T ss_pred CEEEEEEEeCC-CEEEEEEeecCCCCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceEEEEEEecCCCccCcEEE
Confidence 34555556655 4899999986 56799999999999999999999999999999998887776543 455567888
Q ss_pred EEEEEeecCCCCCCCCCccceeeEEEEeccccccc--CCCcc-chhhhhh
Q 020742 183 LYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA--SDDVI-SHGVTGL 229 (322)
Q Consensus 183 ~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~--~~~~~-~~~~~~~ 229 (322)
+|++....... ...++.|..++.|+++++++++ .+++. ++++.++
T Consensus 127 ~f~a~~~~~~~--~~~~e~E~i~~~~~~~~e~~~~~~~g~i~d~~ti~al 174 (185)
T PRK11762 127 IVLAEDLYPER--LEGDEPEPLEVVRWPLADLDELLARPDFSEARSVAAL 174 (185)
T ss_pred EEEEEcccccc--CCCCCCceeEEEEEcHHHHHHHHHcCCCCcHHHHHHH
Confidence 89887654422 1234567778999999999874 45555 6666554
No 31
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=1e-16 Score=131.33 Aligned_cols=104 Identities=25% Similarity=0.332 Sum_probs=71.8
Q ss_pred EEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee--cc---cCeEEEEEE
Q 020742 110 TGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE--KI---FGQQRVRLY 184 (322)
Q Consensus 110 ~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~--~~---~~~~~~~~y 184 (322)
++++|+++ +++||+++.+.+.|.+|||+++.||++.+||+||++||||+.+.....+..+.. .. .....+.++
T Consensus 5 v~~~i~~~--~~vLL~~~~~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (123)
T cd04672 5 VRAAIFKD--GKILLVREKSDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPPQPYQVYKLF 82 (123)
T ss_pred EEEEEEEC--CEEEEEEEcCCCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEeEEEEEeccccccCCCCceEEEEEE
Confidence 34555565 399999998889999999999999999999999999999998843222222211 11 112334444
Q ss_pred EEEeecCCCCCCCCCccceeeEEEEecccccccC
Q 020742 185 IIAGVRDDTAFAPQTKKEISEIAWQRLDELQPAS 218 (322)
Q Consensus 185 ~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~~ 218 (322)
+++..... . ....+|+.+++|+++++++.+.
T Consensus 83 f~~~~~~~-~--~~~~~E~~~~~W~~~~el~~l~ 113 (123)
T cd04672 83 FLCEILGG-E--FKPNIETSEVGFFALDDLPPLS 113 (123)
T ss_pred EEEEecCC-c--ccCCCceeeeEEECHHHCcccc
Confidence 44444332 2 2234789999999999998853
No 32
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.72 E-value=6.7e-17 Score=131.26 Aligned_cols=102 Identities=26% Similarity=0.391 Sum_probs=72.7
Q ss_pred EEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeee--eecc----c-CeE
Q 020742 110 TGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF--IEKI----F-GQQ 179 (322)
Q Consensus 110 ~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~--~~~~----~-~~~ 179 (322)
++++++++ +++||+++.+ .+.|.||||+++.||++.+||+||++||||+++.....+..+ .... . .+.
T Consensus 3 v~~ii~~~--~~vLl~~r~~~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (122)
T cd04673 3 VGAVVFRG--GRVLLVRRANPPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVEFHY 80 (122)
T ss_pred EEEEEEEC--CEEEEEEEcCCCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeeceeEEEEEEeeccCCCccceEE
Confidence 45666665 3899999876 688999999999999999999999999999998654433322 1111 1 123
Q ss_pred EEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 180 RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 180 ~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
.+..|.+...... ....+|+.++.|++++++.++
T Consensus 81 ~~~~~~~~~~~~~----~~~~~E~~~~~w~~~~el~~~ 114 (122)
T cd04673 81 VLIDFLCRYLGGE----PVAGDDALDARWVPLDELAAL 114 (122)
T ss_pred EEEEEEEEeCCCc----ccCCcccceeEEECHHHHhhC
Confidence 3444555433322 234578899999999999874
No 33
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.72 E-value=7.5e-17 Score=133.50 Aligned_cols=109 Identities=19% Similarity=0.133 Sum_probs=77.9
Q ss_pred cCCcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccC
Q 020742 101 TSYKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFG 177 (322)
Q Consensus 101 ~~y~~~v~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~ 177 (322)
..|.+...++++|+.++ ++|||++|.. .+.|++|||+++.||++++||+||++||||+++.....+..+ .....
T Consensus 7 ~~~~~~~~~v~~ii~~~--~~vLL~kr~~~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~~~~~~~-~~~~~ 83 (130)
T cd04511 7 IHYQNPKIIVGCVPEWE--GKVLLCRRAIEPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVY-SVPHI 83 (130)
T ss_pred ccCCCCcEEEEEEEecC--CEEEEEEecCCCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEeeeEEEEE-ecCCc
Confidence 34455555677777776 3899999854 689999999999999999999999999999998654333333 22223
Q ss_pred eEEEEEEEEEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742 178 QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP 216 (322)
Q Consensus 178 ~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~ 216 (322)
.....+|.+...... .....|..++.|+++++|+.
T Consensus 84 ~~~~~~f~~~~~~~~----~~~~~e~~~~~~~~~~~l~~ 118 (130)
T cd04511 84 SQVYMFYRARLLDLD----FAPGPESLEVRLFTEEEIPW 118 (130)
T ss_pred eEEEEEEEEEEcCCc----ccCCcchhceEEECHHHCCc
Confidence 344555655443332 22346778999999999974
No 34
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=1.5e-16 Score=129.94 Aligned_cols=108 Identities=26% Similarity=0.391 Sum_probs=75.4
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeee-----e-ecccC--e
Q 020742 107 VPVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF-----I-EKIFG--Q 178 (322)
Q Consensus 107 v~v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~-----~-~~~~~--~ 178 (322)
.+++++||+++++ ++||++|...+.|.||||+++.||++.+||+||++||||+++.....+..+ . ....+ +
T Consensus 2 ~~~v~~ii~~~~~-~vLl~~r~~~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (129)
T cd04676 2 LPGVTAVVRDDEG-RVLLIRRSDNGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPNGDVR 80 (129)
T ss_pred cceEEEEEECCCC-eEEEEEecCCCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeecccceeecCCCCcE
Confidence 3567788888764 999999987899999999999999999999999999999987653321111 0 11111 2
Q ss_pred EEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 179 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 179 ~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
+.+.+++......... .....|..++.|++++++..+
T Consensus 81 ~~~~~~~~~~~~~~~~--~~~~~e~~~~~w~~~~el~~~ 117 (129)
T cd04676 81 QYLDITFRCRVVGGEL--RVGDDESLDVAWFDPDGLPPL 117 (129)
T ss_pred EEEEEEEEEEeeCCee--cCCCCceeEEEEEChhhCccc
Confidence 3444444433332211 124577889999999999874
No 35
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.71 E-value=7e-17 Score=136.71 Aligned_cols=112 Identities=27% Similarity=0.407 Sum_probs=84.0
Q ss_pred CCcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecc---
Q 020742 102 SYKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI--- 175 (322)
Q Consensus 102 ~y~~~v~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~--- 175 (322)
.|.....++++++...+ +||||||.. .|.|.+|||+++.|||+++||.||++||||+++..+..+..+-...
T Consensus 5 ~~~~p~~~v~~~i~~~~--~iLLvrR~~~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~~~rd~ 82 (145)
T COG1051 5 GYRTPLVAVGALIVRNG--RILLVRRANEPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFDDPGRDP 82 (145)
T ss_pred cCCCcceeeeEEEEeCC--EEEEEEecCCCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCcccceeEEEEecCCCCCC
Confidence 45666777888888775 899999988 5899999999999999999999999999999987655554443222
Q ss_pred cCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 176 FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 176 ~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
..++...+|+++...+. ....+..+...+.|+++++++.+
T Consensus 83 r~~~v~~~~~~~~~~g~--~~~~~~~d~~~~~~~~~~~l~~~ 122 (145)
T COG1051 83 RGHHVSFLFFAAEPEGE--LLAGDGDDAAEVGWFPLDELPEL 122 (145)
T ss_pred ceeEEEEEEEEEecCCC--cccCChhhHhhcceecHhHcccc
Confidence 23455556666554332 22333347788999999999974
No 36
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.71 E-value=1.4e-16 Score=142.08 Aligned_cols=126 Identities=12% Similarity=0.055 Sum_probs=95.5
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeCC---------CcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-ccc
Q 020742 107 VPVTGAIILDETYERCILVKGWKG---------SSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIF 176 (322)
Q Consensus 107 v~v~g~Iv~~~~~~kvLLvrr~~~---------~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~ 176 (322)
..+|++|.++++.++|||+++++. ..|++|+|++|+||++.+||+||+.||||+.+..+..+..++. ++.
T Consensus 49 ~~~V~il~~~~~~~~vlLvrQyR~~~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~spg~ 128 (202)
T PRK10729 49 GHAAVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRTKPVLSYLASPGG 128 (202)
T ss_pred CCeEEEEEEECCCCEEEEEEeeecccccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEEEEEEEEEcCCCc
Confidence 356777778765459999999982 3699999999999999999999999999999988877766544 567
Q ss_pred CeEEEEEEEEEe-ecCC-CCCCCCCccceeeEEEEeccccccc--CCCcc-chhhhhhhhh
Q 020742 177 GQQRVRLYIIAG-VRDD-TAFAPQTKKEISEIAWQRLDELQPA--SDDVI-SHGVTGLKLY 232 (322)
Q Consensus 177 ~~~~~~~y~~~~-~~~~-~~~~~~~~~Ei~~~~Wv~ldeL~~~--~~~~~-~~~~~~~~~~ 232 (322)
..+.+++|++.. .... ......++.|..++.|++++++.++ ++++. +.++.++.++
T Consensus 129 ~~e~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~~~G~i~d~~ti~al~~~ 189 (202)
T PRK10729 129 TSERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWVEEGKIDNAASVIALQWL 189 (202)
T ss_pred CceEEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 788999999874 2211 1112345677778999999999884 66666 6666665433
No 37
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.71 E-value=1.5e-16 Score=130.65 Aligned_cols=107 Identities=18% Similarity=0.187 Sum_probs=74.4
Q ss_pred cEEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeee----ecc-cCeEEEE
Q 020742 108 PVTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFI----EKI-FGQQRVR 182 (322)
Q Consensus 108 ~v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~----~~~-~~~~~~~ 182 (322)
.++++|+. ++ +|||+|+...+.|.+|||+++.||++.+||+||++||||+++.....+..+. ... ..+....
T Consensus 3 ~v~~vi~~-~~--~vLl~~~~~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (126)
T cd04688 3 RAAAIIIH-NG--KLLVQKNPDETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEIEF 79 (126)
T ss_pred EEEEEEEE-CC--EEEEEEeCCCCeEECCCccccCCCCHHHHHHHHHHHHhCCceecceeeEEEEEeeccCCcccEEEEE
Confidence 45555554 43 8999998777899999999999999999999999999999887654433321 111 2234455
Q ss_pred EEEEEeecCCCCC----CCCCccceeeEEEEeccccccc
Q 020742 183 LYIIAGVRDDTAF----APQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 183 ~y~~~~~~~~~~~----~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
+|.+....+.... ...+.+|+.++.|++++++..+
T Consensus 80 ~f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~ 118 (126)
T cd04688 80 YYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEI 118 (126)
T ss_pred EEEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccC
Confidence 6655543332111 0124578999999999999864
No 38
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.71 E-value=8.9e-17 Score=135.91 Aligned_cols=110 Identities=23% Similarity=0.296 Sum_probs=76.1
Q ss_pred CCcccccEEEEEEEeCCCCEEEEEEeeC-CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcc--cceeeee-----ee--
Q 020742 102 SYKVRVPVTGAIILDETYERCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDV--SKLLNKD-----EF-- 171 (322)
Q Consensus 102 ~y~~~v~v~g~Iv~~~~~~kvLLvrr~~-~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v--~~l~~~~-----~~-- 171 (322)
.|+.++ .+++++++.++ +|||++|.. .+.|++|||+++.|||+.+||+||++||||+++ ..+..+. .+
T Consensus 3 ~~~~~~-~v~~vi~~~~~-~vLl~~r~~~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 80 (148)
T PRK09438 3 PYKRPV-SVLVVIYTPDL-GVLMLQRADDPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYEI 80 (148)
T ss_pred CccCce-EEEEEEEeCCC-eEEEEEecCCCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeeccccccccccc
Confidence 344433 45677777664 899998865 689999999999999999999999999999988 3332211 11
Q ss_pred e-------ecccCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 172 I-------EKIFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 172 ~-------~~~~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
. .....+...++|.+.. ..... + ..+|+.++.|++++++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~f~~~~-~~~~~--~-~~~E~~~~~W~~~~e~~~~ 129 (148)
T PRK09438 81 FPHWRHRYAPGVTRNTEHWFCLAL-PHERP--V-VLTEHLAYQWLDAREAAAL 129 (148)
T ss_pred chhhhhccccccCCceeEEEEEec-CCCCc--c-ccCcccceeeCCHHHHHHH
Confidence 0 1112244566777653 32211 2 2358899999999999874
No 39
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=8.7e-17 Score=131.52 Aligned_cols=104 Identities=16% Similarity=0.280 Sum_probs=75.7
Q ss_pred EEEEEEEeCCCCEEEEEEeeC------CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccc--eeeeeeeeecccCeEE
Q 020742 109 VTGAIILDETYERCILVKGWK------GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK--LLNKDEFIEKIFGQQR 180 (322)
Q Consensus 109 v~g~Iv~~~~~~kvLLvrr~~------~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~--l~~~~~~~~~~~~~~~ 180 (322)
|+++++.++ ++|||++|.+ .|.|+||||+++.||++.+||+||++||||+++.. +.....+. .......
T Consensus 3 v~~~~~~~~--g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~-~~~~~~~ 79 (122)
T cd04682 3 VALALLIGD--GRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYP-SASPPGT 79 (122)
T ss_pred eEEEEEEcC--CEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCcccccccceeEecc-cCCCCce
Confidence 456666665 4999999864 48999999999999999999999999999999863 22222222 2233455
Q ss_pred EEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 181 ~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
.++|.+...... . .....+|+.++.|++++++...
T Consensus 80 ~~~f~~~~~~~~-~-~~~~~~E~~~~~W~~~~el~~~ 114 (122)
T cd04682 80 EHVFVVPLTARE-D-AILFGDEGQALRLMTVEEFLAH 114 (122)
T ss_pred EEEEEEEEecCC-C-ccccCchhheeecccHHHHhhc
Confidence 667777655432 1 2345688999999999999764
No 40
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.70 E-value=1.2e-16 Score=132.85 Aligned_cols=104 Identities=25% Similarity=0.362 Sum_probs=75.2
Q ss_pred cEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee--cc-cCeEEE
Q 020742 108 PVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE--KI-FGQQRV 181 (322)
Q Consensus 108 ~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~--~~-~~~~~~ 181 (322)
+++.+++.+++ ++||++|.. .+.|.+|||+++.||++.+||+||++||||+++.....+..+.. .. ......
T Consensus 2 ~~~~~~i~~~~--~vLL~~r~~~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd03427 2 LTTLCFIKDPD--KVLLLNRKKGPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGV 79 (137)
T ss_pred eEEEEEEEECC--EEEEEEecCCCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecceEEEEEEEEcCCCCcEEEE
Confidence 35567777763 899999886 68999999999999999999999999999999887554444322 11 133455
Q ss_pred EEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 182 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 182 ~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
++|.+....+. +....|..++.|+++++++.+
T Consensus 80 ~~f~~~~~~~~----~~~~~e~~~~~W~~~~el~~~ 111 (137)
T cd03427 80 FVFLATEFEGE----PLKESEEGILDWFDIDDLPLL 111 (137)
T ss_pred EEEEECCcccc----cCCCCccccceEEcHhhcccc
Confidence 55655433322 223456678999999999863
No 41
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.70 E-value=1.4e-16 Score=129.06 Aligned_cols=101 Identities=28% Similarity=0.379 Sum_probs=74.4
Q ss_pred EEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccc--eeeeeeeeecc----cCeEEEEE
Q 020742 110 TGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK--LLNKDEFIEKI----FGQQRVRL 183 (322)
Q Consensus 110 ~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~--l~~~~~~~~~~----~~~~~~~~ 183 (322)
+++++++.++ ++||+|+...+.|.||||++++||++.+||+||++||||+++.. +..+..+.... ......++
T Consensus 3 ~~~~v~~~~~-~vLl~~r~~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (118)
T cd04690 3 AAALILVRDG-RVLLVRKRGTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDVRATV 81 (118)
T ss_pred EEEEEEecCC-eEEEEEECCCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhheEEEEEEecccccCCCcEEEEEE
Confidence 4555555554 99999987788999999999999999999999999999998876 66665543321 11234555
Q ss_pred EEEEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742 184 YIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP 216 (322)
Q Consensus 184 y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~ 216 (322)
|.+.. .. .....+|+.++.|++++++..
T Consensus 82 f~~~~-~~----~~~~~~e~~~~~W~~~~e~~~ 109 (118)
T cd04690 82 YVAEL-TG----EPVPAAEIEEIRWVDYDDPAD 109 (118)
T ss_pred EEEcc-cC----CcCCCchhhccEEecHHHccc
Confidence 65543 22 133457889999999999855
No 42
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.70 E-value=7.9e-17 Score=133.83 Aligned_cols=105 Identities=19% Similarity=0.250 Sum_probs=77.3
Q ss_pred cEEEEEEEeCCCCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeEEEEEEE
Q 020742 108 PVTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYI 185 (322)
Q Consensus 108 ~v~g~Iv~~~~~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~~~~~y~ 185 (322)
+++.+.+.+++ +++||++|.+ .+.|++|||+++.||++.+||+||++||||+++..+..+..+.. ...+..+..|+
T Consensus 1 ~~v~i~l~~~~-~~vLL~~r~~~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~~~l~~~~~-~~~~~~~~~f~ 78 (131)
T cd03429 1 PAVIVLVIDGG-DRILLARQPRFPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYVGSQPW-PFPSSLMLGFT 78 (131)
T ss_pred CeEEEEEEeCC-CEEEEEEecCCCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeeeEEEeecCC-CCCceEEEEEE
Confidence 35566667765 4999999976 78999999999999999999999999999999987665544321 12234455565
Q ss_pred EEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 186 IAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 186 ~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
+..... .. ....+|+.++.|++++++.++
T Consensus 79 ~~~~~~--~~-~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 79 AEADSG--EI-VVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred EEEcCC--cc-cCCchhhhccEeecHHHHhhc
Confidence 543322 22 234578899999999998774
No 43
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.69 E-value=2.9e-16 Score=126.47 Aligned_cols=98 Identities=31% Similarity=0.453 Sum_probs=71.8
Q ss_pred EEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeEEEEEEEEEeec
Q 020742 111 GAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVR 190 (322)
Q Consensus 111 g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~~~~~y~~~~~~ 190 (322)
++|+.+ + +++||+++.. +.|.+|||+++.||++.+||.||++||||+++..+..+..+.. .....++|.+. ..
T Consensus 4 ~~i~~~-~-~~vLlv~r~~-~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~---~~~~~~~f~~~-~~ 76 (112)
T cd04667 4 TVICRR-G-GRVLLVRKSG-SRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYLFHVDG---GSTRHHVFVAS-VP 76 (112)
T ss_pred EEEEec-C-CEEEEEEcCC-CcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccceEEEEEEeC---CCEEEEEEEEE-cC
Confidence 344444 4 3999999874 8999999999999999999999999999999877665554422 23344555553 33
Q ss_pred CCCCCCCCCccceeeEEEEeccccccc
Q 020742 191 DDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 191 ~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
... .....+|+.++.|++++++.++
T Consensus 77 ~~~--~~~~~~e~~~~~W~~~~el~~~ 101 (112)
T cd04667 77 PSA--QPKPSNEIADCRWLSLDALGDL 101 (112)
T ss_pred CcC--CCCCchheeEEEEecHHHhhhc
Confidence 221 2234578899999999999874
No 44
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.68 E-value=2.9e-16 Score=128.80 Aligned_cols=108 Identities=30% Similarity=0.442 Sum_probs=80.0
Q ss_pred cEEEEEEEeCCCCEEEEEEeeCC-----CcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeee--eeecccC--e
Q 020742 108 PVTGAIILDETYERCILVKGWKG-----SSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDE--FIEKIFG--Q 178 (322)
Q Consensus 108 ~v~g~Iv~~~~~~kvLLvrr~~~-----~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~--~~~~~~~--~ 178 (322)
+++++|+++.++ +|||+++.+. +.|.+|||+++.||++.+||+||+.||||+++........ +...... .
T Consensus 3 ~~v~~ii~~~~~-~vLl~~r~~~~~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~~~~~~~~~~~~~~~~~ 81 (134)
T PF00293_consen 3 RAVGVIIFNEDG-KVLLIKRSRSPITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLELLGLFSYPSPSGDPEG 81 (134)
T ss_dssp EEEEEEEEETTT-EEEEEEESTTSSSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEEEEEEEEEEETTTESSE
T ss_pred CEEEEEEEeCCc-EEEEEEecCCCCCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccccceeeeecccCCCccc
Confidence 578899999986 9999999873 7999999999999999999999999999999865433332 2222222 3
Q ss_pred EEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 179 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 179 ~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
....+|.+..........+ ...|+.++.|++++++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~-~~~e~~~~~W~~~~el~~~ 119 (134)
T PF00293_consen 82 EIVIFFIAELPSEQSEIQP-QDEEISEVKWVPPDELLEL 119 (134)
T ss_dssp EEEEEEEEEEEEEESECHT-TTTTEEEEEEEEHHHHHHH
T ss_pred EEEEEEEEEEeCCccccCC-CCccEEEEEEEEHHHhhhc
Confidence 5555665554443322223 2349999999999999873
No 45
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.68 E-value=2.7e-16 Score=138.41 Aligned_cols=126 Identities=16% Similarity=0.175 Sum_probs=92.6
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeC---------CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-ccc
Q 020742 107 VPVTGAIILDETYERCILVKGWK---------GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIF 176 (322)
Q Consensus 107 v~v~g~Iv~~~~~~kvLLvrr~~---------~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~ 176 (322)
-+++++|+++.+.++|||+++++ ...|+||||+++.||++++||+||++||||+.+..+..+..+.. +..
T Consensus 44 ~~~v~vl~~~~~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~~~~~~~~~~g~ 123 (185)
T TIGR00052 44 GNAAAVLLYDPKKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLRKLLSFYSSPGG 123 (185)
T ss_pred CCeEEEEEEECCCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceEEEEEEEcCCCC
Confidence 34667777766545999999976 24789999999999999999999999999999988777766543 456
Q ss_pred CeEEEEEEEEEeecCCC-CCCCCCccceeeEEEEeccccccc--CCCcc-chhhhhhhhh
Q 020742 177 GQQRVRLYIIAGVRDDT-AFAPQTKKEISEIAWQRLDELQPA--SDDVI-SHGVTGLKLY 232 (322)
Q Consensus 177 ~~~~~~~y~~~~~~~~~-~~~~~~~~Ei~~~~Wv~ldeL~~~--~~~~~-~~~~~~~~~~ 232 (322)
....+++|++....... .....+++|...+.|++++++.++ ++++. ++++.++.+|
T Consensus 124 ~~~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~~~G~i~d~~t~~al~~~ 183 (185)
T TIGR00052 124 VTELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWIKEGKIDNGKTVILLQWL 183 (185)
T ss_pred CcEEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 67788888886433211 111223456677899999999884 66665 6666665443
No 46
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.68 E-value=4e-16 Score=130.84 Aligned_cols=106 Identities=17% Similarity=0.251 Sum_probs=68.2
Q ss_pred cEEEEEEEeCCCCEEEEEEeeC-----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeee-eee-------e-e
Q 020742 108 PVTGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK-DEF-------I-E 173 (322)
Q Consensus 108 ~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~-~~~-------~-~ 173 (322)
.++++|+.++ ++|||+||.. +|.|++|||+++.|||+.+||+||++||||+++...... ..+ . .
T Consensus 5 ~~~~~ii~~~--~~vLl~~R~~~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 82 (141)
T PRK15472 5 TIVCPLIQND--GAYLLCKMADDRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYA 82 (141)
T ss_pred eEEEEEEecC--CEEEEEEecccCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEec
Confidence 3445555554 3999999754 489999999999999999999999999999986431100 001 0 0
Q ss_pred cccCeEEEEEEEEEee-cCCCCCCCCCccceeeEEEEeccccccc
Q 020742 174 KIFGQQRVRLYIIAGV-RDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 174 ~~~~~~~~~~y~~~~~-~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
.....+...+|++... ..... ....+|+.++.|+++++|+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~E~~~~~w~~~~el~~l 125 (141)
T PRK15472 83 DGRKEEIYMIYLIFDCVSANRD--VKINEEFQDYAWVKPEDLVHY 125 (141)
T ss_pred CCCceeEEEEEEEEEeecCCCc--ccCChhhheEEEccHHHhccc
Confidence 1111122233322211 11112 223478999999999999985
No 47
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.68 E-value=1.9e-16 Score=130.34 Aligned_cols=104 Identities=21% Similarity=0.261 Sum_probs=72.6
Q ss_pred EEEEEEEeCCCCEEEEEEeeC-----CCcEEcc-cccCCCCCCHHHHHHHHHHHHhCCcccc--eeeeeeeeecccCeEE
Q 020742 109 VTGAIILDETYERCILVKGWK-----GSSWSFP-RGKKNKDEEDHACAIREVQEETGFDVSK--LLNKDEFIEKIFGQQR 180 (322)
Q Consensus 109 v~g~Iv~~~~~~kvLLvrr~~-----~~~w~fP-gG~ie~gEs~~eaA~REv~EETGl~v~~--l~~~~~~~~~~~~~~~ 180 (322)
++.++++++++ +|||++|.. +|.|++| ||+++.||++ +||+||++||||+++.. +..+..+.....+...
T Consensus 2 ~v~v~~~~~~g-~vLl~~R~~~~~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 79 (127)
T cd04693 2 VVHVCIFNSKG-ELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAEGFDD 79 (127)
T ss_pred eEEEEEEeCCC-eEEEEEccCCCCCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChhhcEEEEEEEeecCCeEE
Confidence 45677777764 999999864 4899998 8999999999 99999999999999763 4344444322212333
Q ss_pred EEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 181 ~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
+.+|.+..... .. ....+|+.++.|++++++.++
T Consensus 80 ~~~~~~~~~~~--~~-~~~~~E~~~~~w~~~~el~~~ 113 (127)
T cd04693 80 YYLFYADVEIG--KL-ILQKEEVDEVKFVSKDEIDGL 113 (127)
T ss_pred EEEEEecCccc--cc-ccCHHHhhhEEEeCHHHHHHH
Confidence 33443332222 11 234578999999999999874
No 48
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=99.68 E-value=5.7e-16 Score=136.88 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=94.9
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeCCC----------cEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeee-ecc
Q 020742 107 VPVTGAIILDETYERCILVKGWKGS----------SWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFI-EKI 175 (322)
Q Consensus 107 v~v~g~Iv~~~~~~kvLLvrr~~~~----------~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~-~~~ 175 (322)
-.++++++++++.+++||+++++.+ .|++|+|.++.| ++++||+||+.||||+.+..+..+..++ .++
T Consensus 45 ~~~v~Vl~~~~~~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~~l~~~~~spG 123 (191)
T PRK15009 45 GNGATILLYNAKKKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVRKLFELYMSPG 123 (191)
T ss_pred CCEEEEEEEECCCCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEEEeeEEEcCCc
Confidence 3567777787655699999999833 489999999975 6999999999999999999888877754 467
Q ss_pred cCeEEEEEEEEEeecC-CCCCCCCCccceeeEEEEeccccccc--CCCcc-chhhhhhhhh
Q 020742 176 FGQQRVRLYIIAGVRD-DTAFAPQTKKEISEIAWQRLDELQPA--SDDVI-SHGVTGLKLY 232 (322)
Q Consensus 176 ~~~~~~~~y~~~~~~~-~~~~~~~~~~Ei~~~~Wv~ldeL~~~--~~~~~-~~~~~~~~~~ 232 (322)
...+.+++|++..... .......+++|..++.|++++++.++ ++++. ++++.++.++
T Consensus 124 ~s~e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i~~G~i~da~ti~al~~~ 184 (191)
T PRK15009 124 GVTELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMIKTGEIRDGKTVLLLNYL 184 (191)
T ss_pred ccCcEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 7889999999976422 11111235678889999999999985 66666 6666655433
No 49
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=5e-16 Score=128.97 Aligned_cols=106 Identities=23% Similarity=0.256 Sum_probs=69.6
Q ss_pred EEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCccc-ceeeeeeeee---c--c---cCeE
Q 020742 109 VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS-KLLNKDEFIE---K--I---FGQQ 179 (322)
Q Consensus 109 v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~-~l~~~~~~~~---~--~---~~~~ 179 (322)
.+++||++++ +|||+++.+.+.|.||||+++.||++.+||+||++||||+.+. ....+..+.. . . ..+.
T Consensus 2 ~~~~ii~~~~--~vLLv~~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 79 (131)
T cd04686 2 AVRAIILQGD--KILLLYTKRYGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDADIFHM 79 (131)
T ss_pred cEEEEEEECC--EEEEEEEcCCCcEECccccCCCCCCHHHHHHHHHHHHHCCcccccceEEEEEEeeccccCCCCceeEE
Confidence 4567777764 8999999876799999999999999999999999999999873 3323322211 1 1 1122
Q ss_pred EEEEEEEEeecCCCCCCCCCccce---eeEEEEeccccccc
Q 020742 180 RVRLYIIAGVRDDTAFAPQTKKEI---SEIAWQRLDELQPA 217 (322)
Q Consensus 180 ~~~~y~~~~~~~~~~~~~~~~~Ei---~~~~Wv~ldeL~~~ 217 (322)
..++|.+ .+.........+..|. ..+.|++++++...
T Consensus 80 ~~~~~~~-~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~ 119 (131)
T cd04686 80 ISYYYLC-EVDAELGAQQLEDYEAELGMKPIWINIHEAIEH 119 (131)
T ss_pred EEEEEEE-EEcCCcCCcccchhhHhcCCCcEEecHHHHHHh
Confidence 3344544 4433221111222332 35899999999873
No 50
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=3.4e-16 Score=128.97 Aligned_cols=104 Identities=18% Similarity=0.211 Sum_probs=77.9
Q ss_pred EEEEEEEeCCCCEEEEEEeeC-----CCcEEc-ccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeeccc-CeEEE
Q 020742 109 VTGAIILDETYERCILVKGWK-----GSSWSF-PRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIF-GQQRV 181 (322)
Q Consensus 109 v~g~Iv~~~~~~kvLLvrr~~-----~~~w~f-PgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~-~~~~~ 181 (322)
++.+++++.++ +|||++|.. .|.|++ |||+++.||++.+||+||++||||+++..+..+..+..... .....
T Consensus 2 ~~~v~i~~~~~-~iLl~~R~~~~~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~l~~~~~~~~~~~~~~~~~ 80 (126)
T cd04697 2 ATYIFVFNSEG-KLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLTPLGLFYYDTDGNRVWG 80 (126)
T ss_pred eEEEEEEcCCC-eEEEEECCCCCCCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccccEEeeEEEecCCCceEEE
Confidence 45678888874 999999864 678999 69999999999999999999999999987766665543222 23344
Q ss_pred EEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 182 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 182 ~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
++|.+.. ... . ....+|+.++.|++++++.++
T Consensus 81 ~~f~~~~-~~~--~-~~~~~E~~~~~w~~~~el~~~ 112 (126)
T cd04697 81 KVFSCVY-DGP--L-KLQEEEVEEITWLSINEILQF 112 (126)
T ss_pred EEEEEEE-CCC--C-CCCHhHhhheEEcCHHHHHHH
Confidence 5666543 322 2 234578899999999999874
No 51
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.67 E-value=3.3e-16 Score=128.93 Aligned_cols=106 Identities=24% Similarity=0.353 Sum_probs=75.8
Q ss_pred cEEEEEEEeCCC--CEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeee---ec--ccCeEE
Q 020742 108 PVTGAIILDETY--ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFI---EK--IFGQQR 180 (322)
Q Consensus 108 ~v~g~Iv~~~~~--~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~---~~--~~~~~~ 180 (322)
..+|+|+++.+. .++||+++.. +.|.+|||+++.|||+.+||+||++||||+++..+..+..+. .. ......
T Consensus 3 ~~~g~vi~~~~~~~~~vLl~~~~~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (130)
T cd03428 3 RSAGAIIYRRLNNEIEYLLLQASY-GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQVRGKLKT 81 (130)
T ss_pred eEEEEEEEEecCCCceEEEEEccC-CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhhhhccceeEEEccccCcceE
Confidence 457777776543 2699999886 999999999999999999999999999999988754432211 11 112345
Q ss_pred EEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 181 ~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
+++|.+... ....... .+|+.++.|++++++.++
T Consensus 82 ~~~f~~~~~-~~~~~~~--~~E~~~~~W~~~~e~~~~ 115 (130)
T cd03428 82 VTYFLAELR-PDVEVKL--SEEHQDYRWLPYEEALKL 115 (130)
T ss_pred EEEEEEEeC-CCCcccc--ccceeeEEeecHHHHHHH
Confidence 556665443 2222222 278999999999999874
No 52
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=5.8e-16 Score=126.80 Aligned_cols=105 Identities=27% Similarity=0.418 Sum_probs=72.8
Q ss_pred cEEEEEEEeCCCCEEEEEEeeC-----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeee-eeeecccC-eEE
Q 020742 108 PVTGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKD-EFIEKIFG-QQR 180 (322)
Q Consensus 108 ~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~-~~~~~~~~-~~~ 180 (322)
.++++||.+++ +++||+||.. +|.|+||||+++.||++.+||+||++||||+++....... .+...... +..
T Consensus 2 ~~v~~vv~~~~-~~iLl~kr~~~~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 80 (129)
T cd04699 2 VAVAALIVKDV-GRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVYNV 80 (129)
T ss_pred ceEEEEEECCC-CcEEEEEecCCCCCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeeeeeEEEEEcCCCEEEE
Confidence 45677777775 4899999875 5789999999999999999999999999999887644322 22222221 233
Q ss_pred E-EEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 181 V-RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 181 ~-~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
+ .+|.+..... .....+|+.++.|++++++..+
T Consensus 81 ~~~~~~~~~~~~----~~~~~~e~~~~~w~~~~el~~~ 114 (129)
T cd04699 81 IYLVFVCEALSG----AVKLSDEHEEYAWVTLEELAIL 114 (129)
T ss_pred EEEEEEeeecCC----cccCChhheEEEEecHHHhhhh
Confidence 3 3333322222 1223568889999999998653
No 53
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.67 E-value=4.1e-16 Score=133.57 Aligned_cols=107 Identities=19% Similarity=0.150 Sum_probs=76.4
Q ss_pred EEEEEEEeCC-CCEEEEEEeeC-----CCcEEcccccCCCC-CCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEE
Q 020742 109 VTGAIILDET-YERCILVKGWK-----GSSWSFPRGKKNKD-EEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQR 180 (322)
Q Consensus 109 v~g~Iv~~~~-~~kvLLvrr~~-----~~~w~fPgG~ie~g-Es~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~ 180 (322)
++.+++.+.+ .++|||+||.. +|.|+||||+++.| |++.+||+||++||||+++..+..+..+.. .......
T Consensus 4 av~v~l~~~~~~~~vLL~~R~~~~~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~~~l~~~~~~~~~~~~~ 83 (157)
T cd03426 4 AVLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTRSGFV 83 (157)
T ss_pred EEEEEEEeCCCceEEEEEEcccccccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccceEEEEECCCccccCCCE
Confidence 4455556554 24999999865 58999999999999 999999999999999999987655544321 1222344
Q ss_pred EEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 181 ~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
+++|++.... ..... .+++|+.++.|++++++.+.
T Consensus 84 v~~~~~~~~~-~~~~~-~~~~E~~~~~W~~~~el~~~ 118 (157)
T cd03426 84 VTPVVGLVPP-PLPLV-LNPDEVAEVFEVPLSFLLDP 118 (157)
T ss_pred EEEEEEEECC-CCCCC-CCHHHhheeEEEcHHHHhCc
Confidence 5556554322 22222 34569999999999999885
No 54
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.66 E-value=7.8e-16 Score=134.88 Aligned_cols=127 Identities=17% Similarity=0.222 Sum_probs=86.5
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeC-----CCcE-EcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeE
Q 020742 107 VPVTGAIILDETYERCILVKGWK-----GSSW-SFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQ 179 (322)
Q Consensus 107 v~v~g~Iv~~~~~~kvLLvrr~~-----~~~w-~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~ 179 (322)
++++.++|++++ ++|||++|.. +|.| .+|||++++||++.+||+||++||||+.+..+..++.+.. ......
T Consensus 37 h~~~~v~v~~~~-g~iLL~~R~~~~~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~~~~~~~~~~~~~~~~ 115 (180)
T PRK15393 37 HRATYIVVHDGM-GKILVQRRTETKDFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPFAEHGQFYFEDENCRV 115 (180)
T ss_pred eEEEEEEEECCC-CeEEEEEeCCCCCCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccceeceeEEecCCCceE
Confidence 466777888876 4999999865 3455 5899999999999999999999999998766554444322 222222
Q ss_pred EEEEEEEEeecCCCCCCCCCccceeeEEEEecccccccCCCccchhhhhhhhhhhhhhHHHHHHHHHhcCC
Q 020742 180 RVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPASDDVISHGVTGLKLYMVAPFLASLKKWISAHKP 250 (322)
Q Consensus 180 ~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~~~~~~~~~~~~~~~~~v~pf~~~L~~wi~~~~~ 250 (322)
...+|.+. .... .....+|+.++.|++++++..+...+. ...+..+..|+.+...
T Consensus 116 ~~~~f~~~-~~~~---~~~~~~E~~~~~W~~~~el~~~~~~~~------------~~~~~~l~~~l~~~~~ 170 (180)
T PRK15393 116 WGALFSCV-SHGP---FALQEEEVSEVCWMTPEEITARCDEFT------------PDSLKALALWLTRNAK 170 (180)
T ss_pred EEEEEEEE-eCCC---CCCChHHeeEEEECCHHHHhhhhhhcC------------ccHHHHHHHHHHhhcc
Confidence 33455443 2322 122468999999999999987532211 2345777778776543
No 55
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.66 E-value=6.3e-16 Score=127.42 Aligned_cols=105 Identities=20% Similarity=0.186 Sum_probs=74.9
Q ss_pred EEEEEEEeC--CCCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeee-----eecc-c-C
Q 020742 109 VTGAIILDE--TYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEF-----IEKI-F-G 177 (322)
Q Consensus 109 v~g~Iv~~~--~~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~-----~~~~-~-~ 177 (322)
++.+++++. + ++|||++|.+ ++.|.+|||+++.||++.+||+||++||||+.+..+..+... .... . .
T Consensus 3 ~~~v~~~~~~~~-~~vLL~~r~~~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~ 81 (129)
T cd04664 3 SVLVVPYRLTGE-GRVLLLRRSDKYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDNGR 81 (129)
T ss_pred EEEEEEEEeCCC-CEEEEEEeCCCCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEeecccccccccCCCce
Confidence 567777776 5 4999999987 799999999999999999999999999999998553332221 1111 1 1
Q ss_pred eEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 178 QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 178 ~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
....++|++.. .... ....++|+.++.|++++++.++
T Consensus 82 ~~~~~~f~~~~-~~~~--~~~~~~E~~~~~W~~~~e~~~~ 118 (129)
T cd04664 82 VWTEHPFAFHL-PSDA--VVTLDWEHDAFEWVPPEEAAAL 118 (129)
T ss_pred EEEEeEEEEEc-CCCC--cccCCccccccEecCHHHHHHH
Confidence 23445565543 3322 1234578899999999999863
No 56
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.65 E-value=2.4e-15 Score=124.68 Aligned_cols=96 Identities=23% Similarity=0.333 Sum_probs=68.4
Q ss_pred CCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceee---eeeeeecccCe-EEEEEEEEEeecCC
Q 020742 119 YERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLN---KDEFIEKIFGQ-QRVRLYIIAGVRDD 192 (322)
Q Consensus 119 ~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~---~~~~~~~~~~~-~~~~~y~~~~~~~~ 192 (322)
.++|||++|.. +|.|.+|||+++.|||+.+||+||++||||+++..+.. +..++...... ....+|++......
T Consensus 13 ~~~vLl~~r~~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~ 92 (131)
T cd04695 13 ETKVLLLKRVKTLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDNRILMAPVFVGFVPPHQ 92 (131)
T ss_pred CCEEEEEEecCCCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccccceeeEeecCCceEEEEEEEEEEecCCC
Confidence 35999999987 89999999999999999999999999999999875422 12222222211 23345555433222
Q ss_pred CCCCCCCccceeeEEEEeccccccc
Q 020742 193 TAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 193 ~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
. ....+|+.++.|++++++..+
T Consensus 93 -~--~~~~~E~~~~~W~~~~e~~~~ 114 (131)
T cd04695 93 -E--VVLNHEHTEYRWCSFAEALEL 114 (131)
T ss_pred -c--cccCchhcccEecCHHHHHHh
Confidence 1 222468899999999999874
No 57
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.65 E-value=1.6e-15 Score=125.81 Aligned_cols=104 Identities=18% Similarity=0.265 Sum_probs=71.5
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEEE
Q 020742 107 VPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRV 181 (322)
Q Consensus 107 v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~~ 181 (322)
+.++++|+.++ ++|||+||.. .|.|+||||+++.||++.+||+||++||||+++.....+..+.. .......+
T Consensus 4 ~~~~~~ii~~~--~~vLL~~R~~~~~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T PRK10546 4 IDVVAAIIERD--GKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYVASHQREVSGRRIHL 81 (135)
T ss_pred EEEEEEEEecC--CEEEEEEccCCCCCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccceeEEEEEEecCCcEEEE
Confidence 45566666544 3899999865 58999999999999999999999999999999865332322211 11222234
Q ss_pred EEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 182 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 182 ~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
++|.+....+. + ...|..++.|++++++..+
T Consensus 82 ~~~~~~~~~~~----~-~~~e~~~~~W~~~~el~~~ 112 (135)
T PRK10546 82 HAWHVPDFHGE----L-QAHEHQALVWCTPEEALRY 112 (135)
T ss_pred EEEEEEEecCc----c-cccccceeEEcCHHHcccC
Confidence 45555433222 1 1245678999999999874
No 58
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=99.62 E-value=2.2e-15 Score=125.32 Aligned_cols=94 Identities=17% Similarity=0.244 Sum_probs=67.0
Q ss_pred CEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccce-ee---eeeeee--c-c-----cCeEEEEEEE
Q 020742 120 ERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL-LN---KDEFIE--K-I-----FGQQRVRLYI 185 (322)
Q Consensus 120 ~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l-~~---~~~~~~--~-~-----~~~~~~~~y~ 185 (322)
.++||+|+.. .+.|.||||+++.|||+.+||+||++||||+.+... .. ...+.. . . ..+..+.+|.
T Consensus 13 ~~~Llvk~~~~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 92 (132)
T cd04661 13 TLVLLVQQKVGSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRNEGIVGAKVFFFK 92 (132)
T ss_pred cEEEEEEeecCCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCcccccccCcccEEEEEE
Confidence 4899999865 479999999999999999999999999999987642 11 111111 0 0 1123456666
Q ss_pred EEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 186 IAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 186 ~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
+....+. +....|+.+++|+++++|+.+
T Consensus 93 ~~~~~g~----~~~~~e~~~~~W~~~~el~~~ 120 (132)
T cd04661 93 ARYMSGQ----FELSQNQVDFKWLAKEELQKY 120 (132)
T ss_pred EEEecCc----cccCCCcceeEecCHHHHHhh
Confidence 6655543 222478899999999999874
No 59
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.62 E-value=7.8e-15 Score=119.96 Aligned_cols=105 Identities=20% Similarity=0.296 Sum_probs=72.3
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEEE
Q 020742 107 VPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRV 181 (322)
Q Consensus 107 v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~~ 181 (322)
+.++++||.+++ +++||+||.. +|.|+||||+++.||++.+||.||+.||||+++.....+..... .......+
T Consensus 4 ~~~~~~ii~~~~-~~vll~rR~~~~~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~~~~~~~~~~~~~~~~~~ 82 (129)
T PRK10776 4 LQIAVGIIRNPN-NEIFITRRAADAHMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHATLFEKLEYEFPDRHITL 82 (129)
T ss_pred eEEEEEEEECCC-CEEEEEEecCCCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecceEEEEEEeeCCCcEEEE
Confidence 345566777765 4999999875 58999999999999999999999999999998765333332211 11222334
Q ss_pred EEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 182 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 182 ~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
.+|.+...... + ...|..++.|+++++++..
T Consensus 83 ~~~~~~~~~~~----~-~~~e~~~~~W~~~~~l~~~ 113 (129)
T PRK10776 83 WFWLVESWEGE----P-WGKEGQPGRWVSQVALNAD 113 (129)
T ss_pred EEEEEEEECCc----c-CCccCCccEEecHHHCccC
Confidence 44544333221 1 2346678899999999873
No 60
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.61 E-value=3.9e-15 Score=128.48 Aligned_cols=106 Identities=16% Similarity=0.223 Sum_probs=76.0
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeC-----CCcEEcc-cccCCCCCCHHHHHHHHHHHHhCCcccceeee-ee--eeecc--
Q 020742 107 VPVTGAIILDETYERCILVKGWK-----GSSWSFP-RGKKNKDEEDHACAIREVQEETGFDVSKLLNK-DE--FIEKI-- 175 (322)
Q Consensus 107 v~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~fP-gG~ie~gEs~~eaA~REv~EETGl~v~~l~~~-~~--~~~~~-- 175 (322)
..+++++|+++++ +|||+||.. +|.|++| ||+++.||++++||+||++||||+.+.....+ .. |....
T Consensus 30 ~~~v~v~i~~~~~-~iLl~kR~~~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 108 (165)
T cd02885 30 HRAFSVFLFNSKG-RLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELVLPRFRYRAPDDG 108 (165)
T ss_pred eeEEEEEEEcCCC-cEEEEeccCCCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchhhccceEEEEEEcCC
Confidence 5677888888874 999999865 6889996 89999999999999999999999998754332 22 11111
Q ss_pred -c-CeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 176 -F-GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 176 -~-~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
. .+....+|.+.. ... ..+ ..+|+.++.|++++++.++
T Consensus 109 ~~~~~~i~~~f~~~~-~~~--~~~-~~~Ev~~~~w~~~~el~~~ 148 (165)
T cd02885 109 GLVEHEIDHVFFARA-DVT--LIP-NPDEVSEYRWVSLEDLKEL 148 (165)
T ss_pred CceeeEEEEEEEEEe-CCC--CCC-CccceeEEEEECHHHHHHH
Confidence 1 123445555543 222 122 5678999999999999873
No 61
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.61 E-value=7.8e-15 Score=118.54 Aligned_cols=105 Identities=24% Similarity=0.389 Sum_probs=75.9
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEEE
Q 020742 107 VPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRV 181 (322)
Q Consensus 107 v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~~ 181 (322)
|.++.+++.+++ +++||++|.. .|.|.||||+++.+|++.+||.||+.||||+++.....+..+.. .......+
T Consensus 1 ~~~~~~~i~~~~-~~~Ll~~r~~~~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (124)
T cd03425 1 IEVVAAIIIDDD-GRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELLATVEHDYPDKRVTL 79 (124)
T ss_pred CeEEEEEEECCC-CEEEEEEeCCCCCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEeccceEEEEEeeCCCCeEEE
Confidence 356777787775 4999999864 68999999999999999999999999999998775444433322 12223455
Q ss_pred EEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 182 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 182 ~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
.+|.+...... . ...|..++.|++++++..+
T Consensus 80 ~~~~~~~~~~~----~-~~~e~~~~~W~~~~el~~~ 110 (124)
T cd03425 80 HVFLVELWSGE----P-QLLEHQELRWVPPEELDDL 110 (124)
T ss_pred EEEEEeeeCCC----c-ccccCceEEEeeHHHcccC
Confidence 56655443322 1 1356788999999999873
No 62
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.61 E-value=3.3e-15 Score=125.84 Aligned_cols=109 Identities=22% Similarity=0.263 Sum_probs=75.8
Q ss_pred cEEEEEEEeCCC--CEEEEEEeeC-----CCcEEc-ccccCCCCCCHHHHHHHHHHHHhCCccc--ceeeeeeeeec-c-
Q 020742 108 PVTGAIILDETY--ERCILVKGWK-----GSSWSF-PRGKKNKDEEDHACAIREVQEETGFDVS--KLLNKDEFIEK-I- 175 (322)
Q Consensus 108 ~v~g~Iv~~~~~--~kvLLvrr~~-----~~~w~f-PgG~ie~gEs~~eaA~REv~EETGl~v~--~l~~~~~~~~~-~- 175 (322)
.++.++|++.+. +++||++|.. +|.|++ |||+++.||++.+||+||++||||+.+. .+..+..+... .
T Consensus 3 ~~v~~~v~~~~~~~~~vLl~~R~~~~~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l~~~~~~~~~~~~ 82 (144)
T cd04692 3 RTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDH 82 (144)
T ss_pred eEEEEEEEEccCCCCEEEEEecCCCCCCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHeEEeeEEEEeccc
Confidence 456777877651 4999999865 589999 5999999999999999999999999864 34434333211 1
Q ss_pred ----cCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 176 ----FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 176 ----~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
......++|++.......... ...+|+.++.|++++++..+
T Consensus 83 ~~~~~~~~~~~~f~~~~~~~~~~~~-~~~~E~~~~~W~~~~el~~~ 127 (144)
T cd04692 83 IGKLIDREFHHVYLYELKVPLEEFT-LQKEEVAGVVLIPLDEFAEL 127 (144)
T ss_pred cCCCccceEEEEEEEeccCChhhcC-CChhHhheEEEECHHHHHHH
Confidence 122345566665443211222 24578999999999999763
No 63
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.59 E-value=2.4e-14 Score=117.28 Aligned_cols=104 Identities=19% Similarity=0.154 Sum_probs=70.3
Q ss_pred cEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEEEE
Q 020742 108 PVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRVR 182 (322)
Q Consensus 108 ~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~~~ 182 (322)
.++++|+.++++ ++||++|.. +|.|+||||+++.||++.+||+||+.||||+++.....+..... .+.....+.
T Consensus 5 ~~~~~ii~~~~~-~vLl~~R~~~~~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~~~~~~~~h~~~~~~~~~~ 83 (128)
T TIGR00586 5 QIAVGIIRNENG-EIIITRRADGHMFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFSEFEKLEYEFYPRHITLWF 83 (128)
T ss_pred EEEEEEEECCCC-EEEEEEEeCCCCCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceeeeEEEEEEEECCCcEEEEE
Confidence 455566666653 899999865 68999999999999999999999999999998764333322211 122223344
Q ss_pred EEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 183 LYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 183 ~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
+|.+.. .+.. + ...+..++.|++++++...
T Consensus 84 ~~~~~~-~~~~---~-~~~~~~~~~W~~~~~l~~~ 113 (128)
T TIGR00586 84 WLLERW-EGGP---P-GKEGQPEEWWVLVGLLADD 113 (128)
T ss_pred EEEEEE-cCCC---c-CcccccccEEeCHHHCCcc
Confidence 444433 2221 1 1234567899999999874
No 64
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.58 E-value=1.8e-14 Score=121.75 Aligned_cols=106 Identities=16% Similarity=0.292 Sum_probs=71.7
Q ss_pred EEEEEEEeCCCCEEEEEEeeC-----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccce----eeeeee--e-e---
Q 020742 109 VTGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKL----LNKDEF--I-E--- 173 (322)
Q Consensus 109 v~g~Iv~~~~~~kvLLvrr~~-----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l----~~~~~~--~-~--- 173 (322)
++++|+++.++ +|||+||.. +|.|++|||+++.||++.+||+||+.||||+.+... ..+..+ . .
T Consensus 3 ~v~viv~~~~~-~vLl~rr~~~~~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~ 81 (143)
T cd04694 3 GVAVLLQSSDQ-KLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLL 81 (143)
T ss_pred EEEEEEEcCCC-EEEEEEECCCCCCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeecccccccc
Confidence 45667777764 999999974 688999999999999999999999999999988642 222211 1 1
Q ss_pred -cc-cCeEEEEEEEEEeecCC---C--CCCCCCccceeeEEEEecccccc
Q 020742 174 -KI-FGQQRVRLYIIAGVRDD---T--AFAPQTKKEISEIAWQRLDELQP 216 (322)
Q Consensus 174 -~~-~~~~~~~~y~~~~~~~~---~--~~~~~~~~Ei~~~~Wv~ldeL~~ 216 (322)
.. .....+.+|++...... . ... ...+|+.+++|++++++.+
T Consensus 82 ~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~-~~~~Ev~~~~Wv~~~~a~~ 130 (143)
T cd04694 82 SRGLPKRHHIVVYILVKSSETHQQLQARLQ-PDPNEVSAAAWLDKSLAKA 130 (143)
T ss_pred CCCcccceeEEEEEEEEecccccccccccc-CChhhccceEeeCHHHHHH
Confidence 11 11233344443322211 0 111 2358999999999999876
No 65
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.58 E-value=3.2e-14 Score=113.96 Aligned_cols=105 Identities=36% Similarity=0.500 Sum_probs=75.3
Q ss_pred EEEEEEEeCCCCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeee--eeeec-ccCeEEEEE
Q 020742 109 VTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKD--EFIEK-IFGQQRVRL 183 (322)
Q Consensus 109 v~g~Iv~~~~~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~--~~~~~-~~~~~~~~~ 183 (322)
++++++.+.+ +++||+++.+ .+.|.+|||+++.||++.+||+||+.||+|+.+....... .+... ........+
T Consensus 2 ~~~~i~~~~~-~~ill~kr~~~~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (123)
T cd02883 2 AVGAVILDED-GRVLLVRRADSPGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEHAVVFV 80 (123)
T ss_pred ceEEEEECCC-CCEEEEEEcCCCCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceeeeEEEEEEeeccCCCceEEEEE
Confidence 4577777775 4899999987 6999999999999999999999999999999886432222 22221 123445555
Q ss_pred EEEEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742 184 YIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP 216 (322)
Q Consensus 184 y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~ 216 (322)
|.+........ .....|..++.|++++++.+
T Consensus 81 ~~~~~~~~~~~--~~~~~e~~~~~w~~~~~l~~ 111 (123)
T cd02883 81 FLARLVGGEPT--LLPPDEISEVRWVTLDELPA 111 (123)
T ss_pred EEEEeCCCCcC--CCCCCccceEEEEcHHHCcc
Confidence 65543332211 23457778899999999987
No 66
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.57 E-value=2.6e-14 Score=137.11 Aligned_cols=112 Identities=19% Similarity=0.321 Sum_probs=75.6
Q ss_pred CcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeee------eeeee
Q 020742 103 YKVRVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNK------DEFIE 173 (322)
Q Consensus 103 y~~~v~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~------~~~~~ 173 (322)
|.+...++++||++++ +|||++|.. .|.|.+|||+++.||++.+||+||++||||+++...... ..+..
T Consensus 199 ~~~~~vtv~avv~~~g--~VLLvrR~~~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~ 276 (340)
T PRK05379 199 YPPTFVTVDAVVVQSG--HVLLVRRRAEPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDH 276 (340)
T ss_pred CCCcceEEEEEEEECC--EEEEEEecCCCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcC
Confidence 4444445666766653 999999875 688999999999999999999999999999987542111 11111
Q ss_pred cc---cCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 174 KI---FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 174 ~~---~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
+. .+....++|++....+. .......+|..++.|++++++..+
T Consensus 277 p~r~~~~~~i~~~f~~~~~~~~-~~~~~~~de~~~~~W~~~~el~~~ 322 (340)
T PRK05379 277 PGRSLRGRTITHAFLFEFPAGE-LPRVKGGDDADKARWVPLAELLAM 322 (340)
T ss_pred CCCCCCCcEEEEEEEEEecCCc-cCccCCCCceeeEEEEEHHHhhhh
Confidence 11 12334455555432222 122334578899999999999763
No 67
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.57 E-value=1.4e-14 Score=127.22 Aligned_cols=106 Identities=15% Similarity=0.244 Sum_probs=74.8
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeC-----CCcEEcc-cccCCCCCCHHHHHHHHHHHHhCCcccceeee-eee--ee--c-
Q 020742 107 VPVTGAIILDETYERCILVKGWK-----GSSWSFP-RGKKNKDEEDHACAIREVQEETGFDVSKLLNK-DEF--IE--K- 174 (322)
Q Consensus 107 v~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~fP-gG~ie~gEs~~eaA~REv~EETGl~v~~l~~~-~~~--~~--~- 174 (322)
..+++++|++++ ++|||+||.. +|.|.+| ||+++.||++.+||+||+.||||+++..+..+ ..+ .. .
T Consensus 34 h~av~v~i~~~~-g~vLL~rR~~~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~ 112 (184)
T PRK03759 34 HLAFSCYLFDAD-GRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLELVLPDFRYRATDPN 112 (184)
T ss_pred eeEEEEEEEcCC-CeEEEEEccCCCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccccccceEEEEEecCC
Confidence 456788888876 4999999753 5678775 79999999999999999999999998753322 111 11 1
Q ss_pred c-cCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 175 I-FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 175 ~-~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
. ......++|.+... +. . ..+.+|+.++.|++++++.++
T Consensus 113 ~~~~~~~~~vf~~~~~-~~--~-~~~~~Ev~~~~W~~~~el~~~ 152 (184)
T PRK03759 113 GIVENEVCPVFAARVT-SA--L-QPNPDEVMDYQWVDPADLLRA 152 (184)
T ss_pred CceeeEEEEEEEEEEC-CC--C-CCChhHeeeEEEECHHHHHHH
Confidence 1 12234556666543 22 1 234578999999999999873
No 68
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.56 E-value=6.6e-14 Score=114.48 Aligned_cols=99 Identities=19% Similarity=0.202 Sum_probs=75.5
Q ss_pred EEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecc-cCeEEEEEEEEEe
Q 020742 110 TGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI-FGQQRVRLYIIAG 188 (322)
Q Consensus 110 ~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~-~~~~~~~~y~~~~ 188 (322)
|.+|+.+++ ++||+++. .+.|++|||+++.||++.+||.||++||||+.+..+..+..+.... .......+|++..
T Consensus 3 v~vi~~~~~--~vLl~~~~-~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~~~l~~~~~~~~~~~~~~~~y~a~~ 79 (118)
T cd04665 3 VLVICFYDD--GLLLVRHK-DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFESGFETLVYPAVS 79 (118)
T ss_pred EEEEEEECC--EEEEEEeC-CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCceEEEEEEEecCCCCcEEEEEEEEEE
Confidence 456666653 89999987 5789999999999999999999999999999998877777664432 2345666777765
Q ss_pred ecCCCCCCCCCccceeeEEEEecccc
Q 020742 189 VRDDTAFAPQTKKEISEIAWQRLDEL 214 (322)
Q Consensus 189 ~~~~~~~~~~~~~Ei~~~~Wv~ldeL 214 (322)
.... . .....|+....|++.+..
T Consensus 80 ~~~~-~--~~~~~E~~~~~~~~~~~~ 102 (118)
T cd04665 80 AQLE-E--KASYLETDGPVLFKNEPE 102 (118)
T ss_pred Eecc-c--ccccccccCcEEeccCCc
Confidence 5543 1 224588999999987654
No 69
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.53 E-value=6e-14 Score=117.04 Aligned_cols=108 Identities=26% Similarity=0.371 Sum_probs=71.1
Q ss_pred EEEEEEEeCCCCEEEEEEeeC-----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCccccee-ee--ee--eeecc-cC
Q 020742 109 VTGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLL-NK--DE--FIEKI-FG 177 (322)
Q Consensus 109 v~g~Iv~~~~~~kvLLvrr~~-----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~-~~--~~--~~~~~-~~ 177 (322)
++++++++.++ +|||+++.. .+.|.+|||+++.||++.+||.||++||||+.+..+. .+ .. +.... ..
T Consensus 2 ~~~~~i~~~~g-~vLl~r~~~~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~~~~~~~~~~f~~~~~~~ 80 (133)
T cd04685 2 AARVVLLDPDD-RVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFLGVDG 80 (133)
T ss_pred eEEEEEEcCCC-eEEEEEEeCCCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCccccccceEEEEEEEEEecCccc
Confidence 56788888774 999999864 4689999999999999999999999999999883322 11 12 21111 12
Q ss_pred eEEEEEEEEEeecCCCCCC---CCCccceeeEEEEeccccccc
Q 020742 178 QQRVRLYIIAGVRDDTAFA---PQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 178 ~~~~~~y~~~~~~~~~~~~---~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
++...+|.+.....+.... .....++..++|+++++|...
T Consensus 81 ~~~~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 81 RQEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred eeeEEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 2334445443322111111 111234668999999999875
No 70
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.53 E-value=1.8e-13 Score=116.92 Aligned_cols=100 Identities=22% Similarity=0.180 Sum_probs=75.8
Q ss_pred EEEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEEEEEEEEE
Q 020742 109 VTGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRVRLYIIA 187 (322)
Q Consensus 109 v~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~~~~y~~~ 187 (322)
.|++|...++ ++||+++++ ..|++|||+++.||++.+||+||++||||+.+..+..++.+.. ........++|++.
T Consensus 26 ~V~ii~~~~~--~~LL~~~~~-~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~~~lg~~~~~~~~~~~~~~vf~A~ 102 (156)
T TIGR02705 26 HVLVIPRYKD--QWLLTEHKR-RGLEFPGGKVEPGETSKEAAIREVMEETGAIVKELHYIGQYEVEGESTDFVKDVYFAE 102 (156)
T ss_pred EEEEEEEECC--EEEEEEEcC-CcEECCceecCCCCCHHHHHHHHHHHHhCcEeeeeEEEEEEEecCCCcEEEEEEEEEE
Confidence 4455555554 899999875 5699999999999999999999999999999988888877644 33456677788887
Q ss_pred eecCCCCCCCCCccceeeEE-EEeccccccc
Q 020742 188 GVRDDTAFAPQTKKEISEIA-WQRLDELQPA 217 (322)
Q Consensus 188 ~~~~~~~~~~~~~~Ei~~~~-Wv~ldeL~~~ 217 (322)
..... +. +|..++. ++++++++++
T Consensus 103 ~~~~~----~~--~e~~E~~~~~~~~~~~~~ 127 (156)
T TIGR02705 103 VSALE----SK--DDYLETKGPVLLQEIPDI 127 (156)
T ss_pred Eeccc----cC--CCceeeEeEEEHHHHHHH
Confidence 66332 22 5545665 7999998773
No 71
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.51 E-value=3.5e-13 Score=110.17 Aligned_cols=57 Identities=23% Similarity=0.296 Sum_probs=46.2
Q ss_pred cccEEEEEEEeCCCCEEEEEEeeC---CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccc
Q 020742 106 RVPVTGAIILDETYERCILVKGWK---GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK 164 (322)
Q Consensus 106 ~v~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~ 164 (322)
.++++++|+...+ ++||++|.. .+.|+||||+++.||++.+||.||+.||||+++..
T Consensus 3 p~~~av~vl~~~~--~~lL~~r~~~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~ 62 (118)
T cd04674 3 PLPVVVALLPVDD--GLLVIRRGIEPGRGKLALPGGFIELGETWQDAVARELLEETGVAVDP 62 (118)
T ss_pred CcEEEEEEEEECC--CEEEEEeecCCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccc
Confidence 3556667766655 466666644 58999999999999999999999999999998863
No 72
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.51 E-value=1.6e-13 Score=121.25 Aligned_cols=107 Identities=18% Similarity=0.109 Sum_probs=74.0
Q ss_pred EEEEEEE-eCCCCEEEEEEeeC-----CCcEEcccccCCC-CCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEE
Q 020742 109 VTGAIIL-DETYERCILVKGWK-----GSSWSFPRGKKNK-DEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQR 180 (322)
Q Consensus 109 v~g~Iv~-~~~~~kvLLvrr~~-----~~~w~fPgG~ie~-gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~ 180 (322)
++++|.+ +.+.+++||++|.. .|.|+||||++|. +|++++||+||++||||+++..+..++.+.. .......
T Consensus 32 aavvl~l~~~~~~~vLl~~R~~~~r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~~lg~l~~~~~~~~~~ 111 (190)
T PRK10707 32 AAVLIPIVRRPQPTLLLTQRSIHLRKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVEVIGVLPPVDSSTGYQ 111 (190)
T ss_pred eEEEEEEEECCCCEEEEEEeCCcccCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceEEEEEeeeeeccCCcE
Confidence 4444434 23234899998543 6899999999997 5789999999999999999988777766542 1223334
Q ss_pred EEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 181 VRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 181 ~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
+..|++.. ...... ..+++|+.++.|++++++.++
T Consensus 112 ~~~~v~~~-~~~~~~-~~d~~Ev~~v~~vpl~e~~~~ 146 (190)
T PRK10707 112 VTPVVGII-PPDLPY-RANEDEVAAVFEMPLAEALHL 146 (190)
T ss_pred EEEEEEEE-CCCCCC-CCChhhhheEEEEeHHHHhCc
Confidence 44444432 222222 235689999999999999874
No 73
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.51 E-value=1.1e-13 Score=118.75 Aligned_cols=107 Identities=17% Similarity=0.304 Sum_probs=74.9
Q ss_pred cccccEEEEEEEeCCCCEEEEEEeeC-----CCcEEcc-cccCCCCCCHHHHHHHHHHHHhCCccccee--eee--eeee
Q 020742 104 KVRVPVTGAIILDETYERCILVKGWK-----GSSWSFP-RGKKNKDEEDHACAIREVQEETGFDVSKLL--NKD--EFIE 173 (322)
Q Consensus 104 ~~~v~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~fP-gG~ie~gEs~~eaA~REv~EETGl~v~~l~--~~~--~~~~ 173 (322)
...+.+++++|++.++ +|||+||.. .|.|++| ||+++.|| .+||+||++||||+++.... .+. .+..
T Consensus 24 g~~h~~v~v~v~~~~g-~vLl~kR~~~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~ 100 (158)
T TIGR02150 24 TPLHRAFSVFLFNEEG-QLLLQRRALSKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRA 100 (158)
T ss_pred CCeEEEEEEEEEcCCC-eEEEEeccCCCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEEE
Confidence 3455677888888764 999999865 5999997 79999999 49999999999999887542 222 1211
Q ss_pred c-ccC-eEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 174 K-IFG-QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 174 ~-~~~-~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
. ..+ .....+|.+.. .. ...+ ..+|+.++.|++++++..+
T Consensus 101 ~~~~g~~~~~~~f~~~~-~~--~~~~-~~~Ev~~~~W~~~~el~~~ 142 (158)
T TIGR02150 101 RDAWGEHELCPVFFARA-PV--PLNP-NPEEVAEYRWVSLEELKEI 142 (158)
T ss_pred ecCCCcEEEEEEEEEec-CC--cccC-ChhHeeeEEEeCHHHHHHH
Confidence 1 112 33445555543 22 2233 3569999999999999874
No 74
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.50 E-value=2.3e-13 Score=112.11 Aligned_cols=55 Identities=31% Similarity=0.462 Sum_probs=45.6
Q ss_pred EEEEEEEeC--CCCEEEEEEe-------eCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCccc
Q 020742 109 VTGAIILDE--TYERCILVKG-------WKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVS 163 (322)
Q Consensus 109 v~g~Iv~~~--~~~kvLLvrr-------~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~ 163 (322)
++|+|+++. +..+|||+++ ...+.|++|||+++.||++.+||+||++||||+++.
T Consensus 2 ~~g~v~~~~~~~~~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~ 65 (126)
T cd04662 2 SAGILLYRFRDGRIEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD 65 (126)
T ss_pred eEEEEEEEEcCCcEEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcce
Confidence 467777643 3237999985 236899999999999999999999999999999875
No 75
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.48 E-value=4.4e-14 Score=129.56 Aligned_cols=161 Identities=14% Similarity=0.155 Sum_probs=112.6
Q ss_pred CChhhhhchHHHHHHHhhhheeeeeCCccCCCCCCcchHHHHHHHHhCCCCcccccccchhHHHhhhcCCcccccEEEEE
Q 020742 34 VPQEDQQSFERILFLVEYAHWFYEDNSVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAI 113 (322)
Q Consensus 34 ~p~~~~~~~~rl~f~ie~a~w~y~d~~~~~~p~l~~~~l~~f~~~l~~~~~~l~~~~~~~~~~~~~~~~y~~~v~v~g~I 113 (322)
+|++.+....+ .++..+|+-...+|.++-.-. ..-..-.+..+.+|.. ..|...-|++-++
T Consensus 90 ~~~~~~~~~~~---a~~l~~w~~~~RFCg~CG~~~-~~~~~g~~~~C~~cg~---------------~~fPR~dP~vIv~ 150 (279)
T COG2816 90 LDEGLFGLAAR---AVQLLEWYRSHRFCGRCGTKT-YPREGGWARVCPKCGH---------------EHFPRIDPCVIVA 150 (279)
T ss_pred CCHHHHHHHHH---HHHHHHHHhhCcCCCCCCCcC-ccccCceeeeCCCCCC---------------ccCCCCCCeEEEE
Confidence 67766554444 899999998877666542111 1111222334455542 3455566776666
Q ss_pred EEeCCCCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeEEEEEEEEEeecC
Q 020742 114 ILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRLYIIAGVRD 191 (322)
Q Consensus 114 v~~~~~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~~~~~y~~~~~~~ 191 (322)
|.+.+ ++||.++.+ .|+|+.-+|.||+|||+++|+.|||+||+|+.+.++.++... ...+.+..+--|++...++
T Consensus 151 v~~~~--~ilLa~~~~h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~~SQ-PWPfP~SLMigf~aey~sg 227 (279)
T COG2816 151 VIRGD--EILLARHPRHFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYVGSQ-PWPFPHSLMLGFMAEYDSG 227 (279)
T ss_pred EecCC--ceeecCCCCCCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEEecc-CCCCchhhhhhheeeeccc
Confidence 77665 688887766 899999999999999999999999999999999998887764 2334455555566766666
Q ss_pred CCCCCCCCccceeeEEEEeccc-ccccCC
Q 020742 192 DTAFAPQTKKEISEIAWQRLDE-LQPASD 219 (322)
Q Consensus 192 ~~~~~~~~~~Ei~~~~Wv~lde-L~~~~~ 219 (322)
+ +. .+..|+.++.||+.++ ++.+..
T Consensus 228 e--I~-~d~~Eleda~WFs~~evl~~L~~ 253 (279)
T COG2816 228 E--IT-PDEGELEDARWFSRDEVLPALPP 253 (279)
T ss_pred c--cc-CCcchhhhccccCHhHHhhhcCC
Confidence 5 23 3458999999999999 555543
No 76
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.45 E-value=7.8e-13 Score=115.67 Aligned_cols=114 Identities=14% Similarity=0.162 Sum_probs=77.2
Q ss_pred EEeCC-CCEEEEEEeeC-----CCcE-EcccccCCCCCCHHHHHHHHHHHHhCCccccee---eee--eeee----cccC
Q 020742 114 ILDET-YERCILVKGWK-----GSSW-SFPRGKKNKDEEDHACAIREVQEETGFDVSKLL---NKD--EFIE----KIFG 177 (322)
Q Consensus 114 v~~~~-~~kvLLvrr~~-----~~~w-~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~---~~~--~~~~----~~~~ 177 (322)
+.|.+ .+++++.||.. +|.| .+|||+++.||++.+||+||++||||+++..+. .++ .+.. ....
T Consensus 41 ~~~~~~~~~l~lqrRs~~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~l~~~g~~~~~~~~~~~~~~ 120 (180)
T cd03676 41 VRDEDGGLRIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGGLQ 120 (180)
T ss_pred EEcCCCCeEEEEEeccCCCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhhceeccEEEEEEEcCCCcEe
Confidence 44554 34899999866 7999 589999999999999999999999999887532 222 1211 1123
Q ss_pred eEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc--CCCcc-chhhhhh
Q 020742 178 QQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA--SDDVI-SHGVTGL 229 (322)
Q Consensus 178 ~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~--~~~~~-~~~~~~~ 229 (322)
+...++|.+. ++..... ..+++|+.++.|++++++.++ .++++ ..++.++
T Consensus 121 ~e~~~~f~~~-~~~~~~~-~~~~~Ev~~~~~~~~~el~~~l~~g~~~~~~~lv~~ 173 (180)
T cd03676 121 PEVEYVYDLE-LPPDFIP-APQDGEVESFRLLTIDEVLRALKEGEFKPNCALVTL 173 (180)
T ss_pred eeEEEEEEEE-cCCCCee-CCCCCcEeEEEEECHHHHHHHHHcCCCCcccHhHHH
Confidence 4556666554 3322222 234689999999999999874 44554 4444444
No 77
>PRK08999 hypothetical protein; Provisional
Probab=99.44 E-value=1e-12 Score=124.32 Aligned_cols=105 Identities=26% Similarity=0.371 Sum_probs=74.3
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEEE
Q 020742 107 VPVTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRV 181 (322)
Q Consensus 107 v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~~ 181 (322)
+.+++++|.+.+ +++||+||.. .|.|+||||+++.||++.+||.||++||||+.+.....+..... .......+
T Consensus 5 ~~~~~~vi~~~~-~~vLL~kR~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~l~~~~h~~~~~~~~i 83 (312)
T PRK08999 5 IHVAAGVIRDAD-GRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAARPLITVRHDYPDKRVRL 83 (312)
T ss_pred eEEEEEEEECCC-CeEEEEEecCCCCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecceeEEEEEEEcCCCeEEE
Confidence 345566666654 3899999865 68999999999999999999999999999998765433332211 12233456
Q ss_pred EEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 182 RLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 182 ~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
++|.+...... + ...|..++.|++++++.++
T Consensus 84 ~~y~~~~~~~~----~-~~~e~~~~~Wv~~~el~~~ 114 (312)
T PRK08999 84 DVRRVTAWQGE----P-HGREGQPLAWVAPDELAVY 114 (312)
T ss_pred EEEEEEEecCc----c-cCccCCccEEecHHHcccC
Confidence 66766543322 2 2356678899999999874
No 78
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.43 E-value=2.8e-12 Score=105.89 Aligned_cols=105 Identities=16% Similarity=0.093 Sum_probs=61.9
Q ss_pred EEEEEeCCC-CEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecc--cCeEEEEEEEEE
Q 020742 111 GAIILDETY-ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKI--FGQQRVRLYIIA 187 (322)
Q Consensus 111 g~Iv~~~~~-~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~--~~~~~~~~y~~~ 187 (322)
.+++.++++ .+||+.+... +.|.||||+++.||++.+||+||++||||+++............. .....++++.+.
T Consensus 4 ~~~~~~~~~~~~ll~~r~~~-~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 82 (126)
T cd04663 4 PAVLRRNGEVLELLVFEHPL-AGFQIVKGTVEPGETPEAAALRELQEESGLPSFLSDYILHVWERRFYQKRHFWHLTLCE 82 (126)
T ss_pred EEEEEeCCceEEEEEEEcCC-CcEECCCccCCCCCCHHHHHHHHHHHHHCCeeeeeeecceeeeCCEeeccEEEEEEEEE
Confidence 445544432 3677776654 569999999999999999999999999999873211111111111 133444555443
Q ss_pred eec---CCCCCCCC-CccceeeEEEEecccccc
Q 020742 188 GVR---DDTAFAPQ-TKKEISEIAWQRLDELQP 216 (322)
Q Consensus 188 ~~~---~~~~~~~~-~~~Ei~~~~Wv~ldeL~~ 216 (322)
... ......+. +..+...+.|++++++..
T Consensus 83 ~~~~~~~~~~~~~~~~E~~~i~~~Wv~l~~~~~ 115 (126)
T cd04663 83 VDQDLPDSWVHFVQDDGGHEFRFFWVDLASCLD 115 (126)
T ss_pred ecCCCcccccCcccCCCCceEEEEEEccccccc
Confidence 321 11111111 233334566999999965
No 79
>PLN03143 nudix hydrolase; Provisional
Probab=99.41 E-value=1.7e-12 Score=121.08 Aligned_cols=110 Identities=19% Similarity=0.276 Sum_probs=78.4
Q ss_pred cEEEEEEE-eCCC-CEEEEEEeeC----CCcEEcccccCCC-CCCHHHHHHHHHHHHhCCccc--ceeeee---------
Q 020742 108 PVTGAIIL-DETY-ERCILVKGWK----GSSWSFPRGKKNK-DEEDHACAIREVQEETGFDVS--KLLNKD--------- 169 (322)
Q Consensus 108 ~v~g~Iv~-~~~~-~kvLLvrr~~----~~~w~fPgG~ie~-gEs~~eaA~REv~EETGl~v~--~l~~~~--------- 169 (322)
+.|++++. +.++ .+++|+++++ ...|+||||.+|. ||++.+||+||++||||+.+. .+..+.
T Consensus 129 ~aVaVL~~l~~~ge~~VlLVrQ~R~pvg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~ 208 (291)
T PLN03143 129 PAVAVLILLESEGETYAVLTEQVRVPVGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGC 208 (291)
T ss_pred CeEEEEEEEeCCCCEEEEEEEeEecCCCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCc
Confidence 35555554 4332 2499999988 5689999999997 589999999999999999864 354442
Q ss_pred -eeeecccCeEEEEEEEEEeecCCC--------CCCCCCccceeeEEEEeccccccc
Q 020742 170 -EFIEKIFGQQRVRLYIIAGVRDDT--------AFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 170 -~~~~~~~~~~~~~~y~~~~~~~~~--------~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
.+..++.....+++|++....... .....+++|...+.|++++++..+
T Consensus 209 ~v~pspG~~dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~ 265 (291)
T PLN03143 209 RMFPSPGGCDEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRM 265 (291)
T ss_pred eEEecCCccCCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHH
Confidence 234456677888888876653211 011235578788999999998774
No 80
>PLN02709 nudix hydrolase
Probab=99.40 E-value=3.1e-12 Score=114.84 Aligned_cols=97 Identities=24% Similarity=0.166 Sum_probs=68.9
Q ss_pred CEEEEEEeeC-----CCcEEcccccCCCC-CCHHHHHHHHHHHHhCCcccceeeeeeeee-cccCeEEEEEEEEEeec-C
Q 020742 120 ERCILVKGWK-----GSSWSFPRGKKNKD-EEDHACAIREVQEETGFDVSKLLNKDEFIE-KIFGQQRVRLYIIAGVR-D 191 (322)
Q Consensus 120 ~kvLLvrr~~-----~~~w~fPgG~ie~g-Es~~eaA~REv~EETGl~v~~l~~~~~~~~-~~~~~~~~~~y~~~~~~-~ 191 (322)
.+|||++|.. .|.|+||||++|++ +++.+||+||++||+|+.......++.... .......++-|++.... .
T Consensus 51 ~~vLl~~Rs~~l~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~~~t~sg~~V~P~V~~~~~~~ 130 (222)
T PLN02709 51 LRVILTKRSSTLSSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEPFVNKKGMSVAPVIGFLHDKK 130 (222)
T ss_pred eEEEEEEcCCCCCCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCCeECCCCCEEEEEEEEecCCC
Confidence 3899999866 79999999999996 578999999999999998875444433211 12223455555553221 1
Q ss_pred CCCCCCCCccceeeEEEEeccccccc
Q 020742 192 DTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 192 ~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
..... .+++|+.++.|++++.+.+.
T Consensus 131 ~~~~~-~np~EV~~vf~vPL~~ll~~ 155 (222)
T PLN02709 131 AFKPL-PNPAEVEEIFDVPLEMFLKD 155 (222)
T ss_pred Ccccc-CChhhhheeEEecHHHHhCC
Confidence 11222 35689999999999999764
No 81
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.32 E-value=1.4e-11 Score=101.01 Aligned_cols=107 Identities=29% Similarity=0.460 Sum_probs=67.5
Q ss_pred EEEEEeCCCCEEEEEEeeCCC-cEEcccccCCCCCCHHH-HHHHHHHHHhCCccc--ceeeeeeeeecc-cCe----EEE
Q 020742 111 GAIILDETYERCILVKGWKGS-SWSFPRGKKNKDEEDHA-CAIREVQEETGFDVS--KLLNKDEFIEKI-FGQ----QRV 181 (322)
Q Consensus 111 g~Iv~~~~~~kvLLvrr~~~~-~w~fPgG~ie~gEs~~e-aA~REv~EETGl~v~--~l~~~~~~~~~~-~~~----~~~ 181 (322)
.+++......++|++++...+ .|.||||+++.||++.+ ||+||++||||+.+. .+..+..+.... ... ...
T Consensus 15 ~~~~~~~~~~~vl~~~~~~~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (161)
T COG0494 15 AVLVGRDGPGEVLLAQRRDDGGLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGSSVGGREH 94 (161)
T ss_pred EEEEecCCCCEEeEEEccccCCceecCCcccCCCCchHHHHHHHHHHHHhCCeeeeecceeeeeccCcccCcccccceEE
Confidence 333433321489999988765 99999999999999988 999999999999998 455554443221 111 111
Q ss_pred EEEEEEeecCCCCCCCCC----ccceeeEEEEeccccccc
Q 020742 182 RLYIIAGVRDDTAFAPQT----KKEISEIAWQRLDELQPA 217 (322)
Q Consensus 182 ~~y~~~~~~~~~~~~~~~----~~Ei~~~~Wv~ldeL~~~ 217 (322)
..+............... ..|...+.|++++++...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 134 (161)
T COG0494 95 RVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAAL 134 (161)
T ss_pred EEEEeeeccccccccccccCCCcchhhceeeeeHHHcccc
Confidence 122222211111111111 257889999999998774
No 82
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.32 E-value=1.7e-11 Score=107.69 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=39.6
Q ss_pred CEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcc
Q 020742 120 ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV 162 (322)
Q Consensus 120 ~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v 162 (322)
.+||+++|...+.|.||||+++.||++.+||.||+.||||+.+
T Consensus 49 l~vLl~~r~~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~l 91 (186)
T cd03670 49 LQFVAIKRPDSGEWAIPGGMVDPGEKISATLKREFGEEALNSL 91 (186)
T ss_pred eEEEEEEeCCCCcCcCCeeeccCCCCHHHHHHHHHHHHHcccc
Confidence 3899999987899999999999999999999999999997654
No 83
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=99.32 E-value=3.4e-12 Score=105.64 Aligned_cols=111 Identities=24% Similarity=0.340 Sum_probs=77.6
Q ss_pred cccEEEEEEEeCCCC--EEEEEEeeC-CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeee---ecccCe-
Q 020742 106 RVPVTGAIILDETYE--RCILVKGWK-GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFI---EKIFGQ- 178 (322)
Q Consensus 106 ~v~v~g~Iv~~~~~~--kvLLvrr~~-~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~---~~~~~~- 178 (322)
...++|+|.+.-+.. +|||+...+ +..|-+|+|++|+||+..+||.||+.||.|+.......+..+. ......
T Consensus 8 ~r~vagCi~~r~~~~~ieVLlvsSs~~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~~~~~~~~ 87 (145)
T KOG2839|consen 8 FRLVAGCICYRSDKEKIEVLLVSSSKKPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGFEDFLSKKHRTK 87 (145)
T ss_pred cEEEEEeeeeeecCcceEEEEEecCCCCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeeeeccccchhhccChhhccc
Confidence 345778888776655 899999877 8899999999999999999999999999999776544333322 222211
Q ss_pred EEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 179 QRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 179 ~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
....+|.+ .+.+....-|....+..+..|+.++|..+.
T Consensus 88 ~k~~~~~l-~v~e~le~wp~~~~~~r~r~W~~ledA~~~ 125 (145)
T KOG2839|consen 88 PKGVMYVL-AVTEELEDWPESEHEFREREWLKLEDAIEL 125 (145)
T ss_pred ccceeehh-hhhhhcccChhhhcccceeEEeeHHHHHHH
Confidence 12234443 333333323444556889999999998763
No 84
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=99.27 E-value=6.3e-13 Score=122.52 Aligned_cols=114 Identities=18% Similarity=0.231 Sum_probs=79.7
Q ss_pred cCCcccccEEEEEEEeCCCCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCe
Q 020742 101 TSYKVRVPVTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQ 178 (322)
Q Consensus 101 ~~y~~~v~v~g~Iv~~~~~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~ 178 (322)
+.|...=|+|..+|.+.++.++||.|+.+ +|.|..++|.+|+|||++|||+||++||||++++.+.+.....-+.+..
T Consensus 181 ~~yPr~dPvVIm~li~~d~~~~LL~R~~r~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~asQPWP~~p~ 260 (345)
T KOG3084|consen 181 VIYPRTDPVVIMLLIDHDGKHALLGRQKRYPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYVASQPWPLMPQ 260 (345)
T ss_pred eeccCCCCeEEEEEEcCCCCEeeeecccCCCCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEeeeecCCCCCCch
Confidence 45666667777778888888999998766 8999999999999999999999999999999999876544322121222
Q ss_pred EEEE-EEEEEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742 179 QRVR-LYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP 216 (322)
Q Consensus 179 ~~~~-~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~ 216 (322)
..+. ++-+.... .......+.|..+.+|++-+++.+
T Consensus 261 SLMIgc~ala~~~--~~I~vd~dlEleDaqwF~r~ev~~ 297 (345)
T KOG3084|consen 261 SLMIGCLALAKLN--GKISVDKDLELEDAQWFDREEVKS 297 (345)
T ss_pred HHHHHHHHHHhhC--CccccCcchhhhhcccccHHHHHH
Confidence 2111 11111111 222222234889999999998866
No 85
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=99.14 E-value=1.4e-10 Score=100.48 Aligned_cols=144 Identities=19% Similarity=0.166 Sum_probs=91.4
Q ss_pred CCCcchHHHHHHHHhCCCCcccccccchhHHHhhhcCCcccccEEEEEEE-e-CCCCEEEEEEeeC----CCcEEccccc
Q 020742 66 SLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIIL-D-ETYERCILVKGWK----GSSWSFPRGK 139 (322)
Q Consensus 66 ~l~~~~l~~f~~~l~~~~~~l~~~~~~~~~~~~~~~~y~~~v~v~g~Iv~-~-~~~~kvLLvrr~~----~~~w~fPgG~ 139 (322)
.++|.++++...+-..|....+.-..+ -.+-..+++.+++|.+ . ++...++|+++.+ +-..++|+|-
T Consensus 39 ~~kWi~Lkkv~~qD~~GKir~wes~~R-------ttr~ea~~dgVaIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGL 111 (225)
T KOG3041|consen 39 DGKWIRLKKVLYQDPTGKIRDWESVQR-------TTRVEARADGVAILAILESDGKPYIVLVKQFRPPTGKICIELPAGL 111 (225)
T ss_pred CccEEEEEEEEEEcCCCceeeeehhee-------cccccccCCeEEEEEEEecCCcEEEEEEEeecCCCCcEEEEccccc
Confidence 467777776665555555444433222 1223335666666643 2 2223899999988 4567899999
Q ss_pred CCCCCCHHHHHHHHHHHHhCCcccce-eeeeeeeecccCeEEEEE--EEEEee-cCCCCCC-CCCccceeeEEEEecccc
Q 020742 140 KNKDEEDHACAIREVQEETGFDVSKL-LNKDEFIEKIFGQQRVRL--YIIAGV-RDDTAFA-PQTKKEISEIAWQRLDEL 214 (322)
Q Consensus 140 ie~gEs~~eaA~REv~EETGl~v~~l-~~~~~~~~~~~~~~~~~~--y~~~~~-~~~~~~~-~~~~~Ei~~~~Wv~ldeL 214 (322)
|+.||+++.||+||++||||+..... .....|..++.++....+ +.+.+. ++++... ..+..|..++.-+++.+|
T Consensus 112 iD~ge~~~~aAiREl~EEtGy~gkv~~~s~~~f~DPGltn~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L 191 (225)
T KOG3041|consen 112 IDDGEDFEGAAIRELEEETGYKGKVDMVSPTVFLDPGLTNCNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSEL 191 (225)
T ss_pred ccCCCchHHHHHHHHHHHhCccceeeeccccEEcCCCCCCCceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHH
Confidence 99999999999999999999984432 233445556655444333 333222 2222222 234678889999999888
Q ss_pred cc
Q 020742 215 QP 216 (322)
Q Consensus 215 ~~ 216 (322)
.+
T Consensus 192 ~~ 193 (225)
T KOG3041|consen 192 WR 193 (225)
T ss_pred HH
Confidence 76
No 86
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=99.13 E-value=3.6e-10 Score=103.46 Aligned_cols=109 Identities=14% Similarity=0.175 Sum_probs=70.5
Q ss_pred cccEEEEEEEeCCCCEEEEEEeeC-----CCcEEcc-cccCCCCCC-----------------HHHHHHHHHHHHhCCcc
Q 020742 106 RVPVTGAIILDETYERCILVKGWK-----GSSWSFP-RGKKNKDEE-----------------DHACAIREVQEETGFDV 162 (322)
Q Consensus 106 ~v~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~fP-gG~ie~gEs-----------------~~eaA~REv~EETGl~v 162 (322)
.+.++.++|+|.++ ++||.||.. +|.|+.. +|++..||+ ..+||+||++|||||.+
T Consensus 55 ~Hra~~v~i~n~~g-~lLLQkRs~~K~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~ 133 (247)
T PLN02552 55 LHRAFSVFLFNSKY-ELLLQQRAATKVTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPA 133 (247)
T ss_pred eEEEEEEEEEcCCC-eEEEEEecCCCCCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCCc
Confidence 34678899999885 999999976 6799664 344444322 67899999999999986
Q ss_pred cc-----eeeeeeeee--ccc----------CeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 163 SK-----LLNKDEFIE--KIF----------GQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 163 ~~-----l~~~~~~~~--~~~----------~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
.. +..+..+.. ... .+...++|+.... ....+.+ +++|+.++.|++++++.++
T Consensus 134 ~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~E~e~~~v~~~~~~-~~~~l~l-q~eEV~~~~wvs~~el~~~ 203 (247)
T PLN02552 134 EDVPVDQFTFLTRLHYKAADDVTHGPDGKWGEHELDYLLFIRPV-RDVKVNP-NPDEVADVKYVNREELKEM 203 (247)
T ss_pred cccccccceeeeEEEEecccccccccCCCccceEEEEEEEEEec-CCCcccC-CHHHhheEEEEeHHHHHHH
Confidence 43 333332211 111 1334444443222 2223333 4689999999999999985
No 87
>PLN02791 Nudix hydrolase homolog
Probab=99.08 E-value=6.2e-10 Score=115.68 Aligned_cols=110 Identities=18% Similarity=0.305 Sum_probs=78.2
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeC-----CCcEEc-ccccCCCCCCHHHHHHHHHHHHhCCcccc--eeeeeeeee----c
Q 020742 107 VPVTGAIILDETYERCILVKGWK-----GSSWSF-PRGKKNKDEEDHACAIREVQEETGFDVSK--LLNKDEFIE----K 174 (322)
Q Consensus 107 v~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~f-PgG~ie~gEs~~eaA~REv~EETGl~v~~--l~~~~~~~~----~ 174 (322)
+.++.+.|++.+.++|||.||.. +|.|++ ||||++.||+..+||+||+.||+|+.+.. +..+..+.. .
T Consensus 32 HrAvhVwIfn~~~gelLLQkRS~~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l~~l~~~~~~~~~~ 111 (770)
T PLN02791 32 HRAVHVWIYSESTQELLLQRRADCKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAFELLFVFLQECVIN 111 (770)
T ss_pred eEEEEEEEEECCCCeEEEEEecCCCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhheeeeeeEEEEeecc
Confidence 45777888886435999999966 899999 79999999999999999999999998642 333332211 0
Q ss_pred --c-cCeEEEEEEEEEeecCC--CCCCCCCccceeeEEEEeccccccc
Q 020742 175 --I-FGQQRVRLYIIAGVRDD--TAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 175 --~-~~~~~~~~y~~~~~~~~--~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
. ..+...++|++..+... ..+.+ .++|+.++.|++++++.++
T Consensus 112 ~g~~~e~E~~~VYlv~~~~~~p~~~~~l-q~eEV~~v~wvsl~El~~~ 158 (770)
T PLN02791 112 DGKFINNEYNDVYLVTTLDPIPLEAFTL-QESEVSAVKYMSIEEYKSA 158 (770)
T ss_pred CCCcceeeEEEEEEEEECCCCCcccCCC-ChhhhheeEEEcHHHHHHH
Confidence 1 22355667776532221 12333 4689999999999999753
No 88
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=98.96 E-value=2.4e-09 Score=95.46 Aligned_cols=97 Identities=20% Similarity=0.225 Sum_probs=65.5
Q ss_pred CEEEEEEeeC-----CCcEEcccccCCC-CCCHHHHHHHHHHHHhCCcccceeeeeeeeeccc-CeEEEEEEEEEeecCC
Q 020742 120 ERCILVKGWK-----GSSWSFPRGKKNK-DEEDHACAIREVQEETGFDVSKLLNKDEFIEKIF-GQQRVRLYIIAGVRDD 192 (322)
Q Consensus 120 ~kvLLvrr~~-----~~~w~fPgG~ie~-gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~-~~~~~~~y~~~~~~~~ 192 (322)
.+|||.||.+ .|.-.||||+.+. +++...||.||++||+|++...+..++....... ....+.-+++......
T Consensus 58 l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~~~~v~p~v~~l~~~~ 137 (246)
T KOG3069|consen 58 LSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRSGWSVFPVVGFLSDKK 137 (246)
T ss_pred eEEEEEeccccccccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeeccCcccceeEEEEeccc
Confidence 4899999877 7999999999998 6788899999999999999876544443211100 1112222222222211
Q ss_pred C-CCCCCCccceeeEEEEecccccc
Q 020742 193 T-AFAPQTKKEISEIAWQRLDELQP 216 (322)
Q Consensus 193 ~-~~~~~~~~Ei~~~~Wv~ldeL~~ 216 (322)
. ........|+.++.|+|++++..
T Consensus 138 ~l~~~~ln~gEv~~~F~VPL~~ll~ 162 (246)
T KOG3069|consen 138 ILPSLRLNSGEVESAFWVPLTDLLL 162 (246)
T ss_pred ccccccCCchheeeeeeeeHHHHhh
Confidence 1 11234578999999999999976
No 89
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=98.82 E-value=2.3e-10 Score=106.28 Aligned_cols=149 Identities=23% Similarity=0.419 Sum_probs=123.4
Q ss_pred CCCchhHHHhhhhhhhccCChhhhhchHHHHHHHhhhheeeeeCCccC--CCCCCcchHHHHHHHHhCCCCcccccccch
Q 020742 16 GLPPQELLDDLCSRFVLNVPQEDQQSFERILFLVEYAHWFYEDNSVEN--NPSLKSFTLKEFTSLMFNSCDVLRPYVAHI 93 (322)
Q Consensus 16 ~~~~~~~l~dl~~Rfi~n~p~~~~~~~~rl~f~ie~a~w~y~d~~~~~--~p~l~~~~l~~f~~~l~~~~~~l~~~~~~~ 93 (322)
.-+.-.|.|.+..|||+|.=.++.+.-.|+++-|+.+||||.|...+- .-.++.+.-+++-..++..+..+..+..++
T Consensus 145 e~Ie~nI~dq~~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l~~t~~~s~~k~~~~~dk~~~~~~~l~vlkk~~~k~ 224 (348)
T KOG2937|consen 145 EGIETNIRDQLVRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHLVPTDKKSGPKGVKSRDKNYMVCPFLRVLKKWILKA 224 (348)
T ss_pred cCcccchhhceeeeeeeccceeeeecchhhhccccceeeeehhhhcccccccCCCccccchhhcccchHHHHHHHHHHhc
Confidence 345678999999999999999999988999999999999999987443 223555555555556666666677777788
Q ss_pred hHHHhhhcCCcccccEEEEEEEeCCCCEEEEEEeeC--CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccc
Q 020742 94 DDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWK--GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK 164 (322)
Q Consensus 94 ~~~~~~~~~y~~~v~v~g~Iv~~~~~~kvLLvrr~~--~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~ 164 (322)
+.....+..++..+++.+.++.+-.++....++.+. +..|.||.|+++.||-+..+++|+..||+|+....
T Consensus 225 ~~~vak~~e~~~~~~tl~~~~t~v~~d~~~~aqS~~~~~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~~s 297 (348)
T KOG2937|consen 225 DEVVAKFPEKKSTVPTLGAALTDVEMDHVVTAQSYFAKPENWTFPKGKISRGEKPRDASIRSTFEEPGFPFGS 297 (348)
T ss_pred cchhhcCcccCccchhHHhhhhccccccceeecccccccccccCcccccccCCccccchhhhcCCCcCCcccc
Confidence 899999999999999999998877666677777665 78999999999999999999999999999998765
No 90
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=98.78 E-value=2.9e-09 Score=98.48 Aligned_cols=112 Identities=23% Similarity=0.424 Sum_probs=77.3
Q ss_pred CcccccEEEEEEEeCCCCEEEEEEeeC-----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceee--eeeeeecc
Q 020742 103 YKVRVPVTGAIILDETYERCILVKGWK-----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLN--KDEFIEKI 175 (322)
Q Consensus 103 y~~~v~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~--~~~~~~~~ 175 (322)
+....-.+|+.|+|.. ++||+|+... .|.|-+|+|.|+++|++.+.|+||++||||++...... +..-....
T Consensus 111 ~Ash~vgvg~~V~n~~-~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~eVla~r~~H~~~ 189 (295)
T KOG0648|consen 111 NASHRVGVGAFVLNKK-KEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVEVLAFRRAHNAT 189 (295)
T ss_pred chhhheeeeeeEecCC-ceeEEEEecccceeecccccccceEecccccchhhhhhhhHHHhCcchhhhhHHHHHhhhcch
Confidence 3344456788888887 5999998633 79999999999999999999999999999996654222 11111112
Q ss_pred cCeEEEEEEEEEeecCCCCCC-CCCccceeeEEEEecccccc
Q 020742 176 FGQQRVRLYIIAGVRDDTAFA-PQTKKEISEIAWQRLDELQP 216 (322)
Q Consensus 176 ~~~~~~~~y~~~~~~~~~~~~-~~~~~Ei~~~~Wv~ldeL~~ 216 (322)
+......+|+++.+.. ..+. .....|+..++|+++++...
T Consensus 190 ~~~~ksd~f~~c~L~p-~s~~i~~~~~ei~~~~Wmp~~e~v~ 230 (295)
T KOG0648|consen 190 FGLIKSDMFFTCELRP-RSLDITKCKREIEAAAWMPIEEYVS 230 (295)
T ss_pred hhcccccceeEEEeec-cccccchhHHHHHHHhcccHHHhhc
Confidence 2222455666666654 2222 22356788889999997755
No 91
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=98.75 E-value=1.2e-07 Score=75.95 Aligned_cols=95 Identities=16% Similarity=0.292 Sum_probs=61.7
Q ss_pred EEEEEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCe--EEEE
Q 020742 109 VTGAIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQ--QRVR 182 (322)
Q Consensus 109 v~g~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~--~~~~ 182 (322)
.+++|+.+ + +++||.||.. +|.|+||+|.++.+|+..++..||+.||.++.... +..+ .+.+.+ ..++
T Consensus 5 ~~~~ii~~-~-~~~ll~kR~~~gl~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~H~fth~~~~~~ 78 (118)
T cd03431 5 IAVVVIRN-D-GRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRLSLEP---LGTV-KHTFTHFRLTLH 78 (118)
T ss_pred EEEEEEec-C-CeEEEEECCCCCCCCcceeCCCccccCCcCHHHHHHHHHHHHhCccccc---ceeE-EEecCCeEEEEE
Confidence 34455544 3 4899999965 89999999999999999999999999987641111 1111 112222 3455
Q ss_pred EEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 183 LYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 183 ~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
+|.+....+. .+..+..|++++++..+
T Consensus 79 ~~~~~~~~~~--------~~~~~~~W~~~eel~~~ 105 (118)
T cd03431 79 VYLARLEGDL--------LAPDEGRWVPLEELDEY 105 (118)
T ss_pred EEEEEEeCCC--------cCccccEEccHHHHhhC
Confidence 5655432221 23356789999998873
No 92
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.63 E-value=1.3e-07 Score=76.57 Aligned_cols=104 Identities=20% Similarity=0.335 Sum_probs=67.1
Q ss_pred EEEEEEEeCCCC--EEEEEEeeC-------CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccc-eeeeeeeeecccCe
Q 020742 109 VTGAIILDETYE--RCILVKGWK-------GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSK-LLNKDEFIEKIFGQ 178 (322)
Q Consensus 109 v~g~Iv~~~~~~--kvLLvrr~~-------~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~-l~~~~~~~~~~~~~ 178 (322)
.+|++++....+ .||||.--. .|-|++|+|....||++..||.||..||+||.+.- .+.++.+... +.
T Consensus 5 SAGvLlYR~~aG~v~VLLvHPGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP~~~lG~~kQ~--GG 82 (161)
T COG4119 5 SAGVLLYRARAGVVDVLLVHPGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGPRIDLGSLKQS--GG 82 (161)
T ss_pred cceeEEEEecCCCEEEEEecCCCCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCchhhhhhhccC--CC
Confidence 457777654322 677775321 68999999999999999999999999999998863 4455544322 22
Q ss_pred EEEEEEEEEee----------------cCCCCCCCCCccceeeEEEEecccccc
Q 020742 179 QRVRLYIIAGV----------------RDDTAFAPQTKKEISEIAWQRLDELQP 216 (322)
Q Consensus 179 ~~~~~y~~~~~----------------~~~~~~~~~~~~Ei~~~~Wv~ldeL~~ 216 (322)
..+..|-+... +... .-..-.|++.+.||++.+...
T Consensus 83 KvVta~~veae~Dva~~rSntFe~eWPprSG--~M~~FPEVDRagWF~l~eAr~ 134 (161)
T COG4119 83 KVVTAFGVEAELDVADARSNTFELEWPPRSG--KMRKFPEVDRAGWFPLAEART 134 (161)
T ss_pred cEEEEEeeeeeeehhhhhcceeeeecCCCCC--ccccCcccccccceecHHHHh
Confidence 33333333211 1111 111235788899999988754
No 93
>PRK10880 adenine DNA glycosylase; Provisional
Probab=98.29 E-value=6.8e-06 Score=79.09 Aligned_cols=134 Identities=13% Similarity=0.118 Sum_probs=79.2
Q ss_pred CccCCCCCCcchHHHHHHHHhCCCCcccccccchhHHHhhhcCCcccccEEEEEEEeCCCCEEEEEEeeC----CCcEEc
Q 020742 60 SVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWK----GSSWSF 135 (322)
Q Consensus 60 ~~~~~p~l~~~~l~~f~~~l~~~~~~l~~~~~~~~~~~~~~~~y~~~v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~f 135 (322)
|++++|.|..|+++..|...-++....+|+..+ ++..+......+|+.++ +++||.||.. +|.|+|
T Consensus 192 C~p~~P~C~~Cpl~~~C~~~~~~~~~~~P~k~~--------k~~~~~~~~~~~~~~~~--~~~~l~~r~~~gl~~gl~~f 261 (350)
T PRK10880 192 CTRSKPKCELCPLQNGCIAYANHSWALYPGKKP--------KQTLPERTGYFLLLQHG--DEVWLEQRPPSGLWGGLFCF 261 (350)
T ss_pred ccCCCCCCCCCccHhhhHHHHcCCHhhCCCCCC--------CCCCCeEEEEEEEEEEC--CEEEEEECCccChhhccccC
Confidence 788999999999999999998888888887654 33333333333344343 4899999865 899999
Q ss_pred ccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeEEEEE--EEEEeecCCCCCCCCCccceeeEEEEeccc
Q 020742 136 PRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQRVRL--YIIAGVRDDTAFAPQTKKEISEIAWQRLDE 213 (322)
Q Consensus 136 PgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~~~~~--y~~~~~~~~~~~~~~~~~Ei~~~~Wv~lde 213 (322)
|.. +. + ...++..|+.|+.......+..+ .+.+.+..+++ |.+.. .... ..... .+..|+++++
T Consensus 262 P~~--~~-~----~~~~~~~~~~~~~~~~~~~~~~~-~H~fTH~~~~~~~~~~~~-~~~~---~~~~~--~~~~w~~~~~ 327 (350)
T PRK10880 262 PQF--AD-E----EELRQWLAQRGIAADNLTQLTAF-RHTFSHFHLDIVPMWLPV-SSFT---GCMDE--GNGLWYNLAQ 327 (350)
T ss_pred CCC--cc-h----hhHHHHHHhcCCchhhhcccCce-EEEEeeEEEEEEEEEEEc-cccc---cccCC--cCCeEechHH
Confidence 963 21 1 12466668888753322212221 22334444443 33322 1110 00001 2335999999
Q ss_pred cccc
Q 020742 214 LQPA 217 (322)
Q Consensus 214 L~~~ 217 (322)
+...
T Consensus 328 ~~~~ 331 (350)
T PRK10880 328 PPSV 331 (350)
T ss_pred hccc
Confidence 8873
No 94
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.15 E-value=1.5e-05 Score=64.11 Aligned_cols=96 Identities=22% Similarity=0.410 Sum_probs=52.3
Q ss_pred EEEEeCCCCEEEEEEeeC----CCcEEcccccCCCCCCHHHHHHHHHHHHhCCcccceeeeeeeeecccCeE--EEEEEE
Q 020742 112 AIILDETYERCILVKGWK----GSSWSFPRGKKNKDEEDHACAIREVQEETGFDVSKLLNKDEFIEKIFGQQ--RVRLYI 185 (322)
Q Consensus 112 ~Iv~~~~~~kvLLvrr~~----~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v~~l~~~~~~~~~~~~~~--~~~~y~ 185 (322)
+++.+.+ +++||.||.. +|+|+||.-.++. ++..+.+.+.+.+..|+.+.....+..+ .+.+.+. .+++|.
T Consensus 2 ~~i~~~~-~~~Ll~kRp~~gll~GLwefP~~e~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~v-~H~fSH~~~~~~~~~ 78 (114)
T PF14815_consen 2 LLIIRSQ-GRVLLEKRPEKGLLAGLWEFPLIESDE-EDDEEELEEWLEEQLGLSIRSVEPLGTV-KHVFSHRRWTIHVYE 78 (114)
T ss_dssp EEEEETT-SEEEEEE--SSSTTTT-EE--EEE-SS-S-CHHHHHHHTCCSSS-EEEE-S-SEEE-EEE-SSEEEEEEEEE
T ss_pred EEEEEeC-CEEEEEECCCCChhhcCcccCEeCccC-CCCHHHHHHHHHHHcCCChhhheecCcE-EEEccceEEEEEEEE
Confidence 4555555 4999999987 8999999988874 4445666666667788776554444433 2233443 455566
Q ss_pred EEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 186 IAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 186 ~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
+...... . .+..+..|++.+++.++
T Consensus 79 ~~~~~~~----~---~~~~~~~W~~~~~l~~~ 103 (114)
T PF14815_consen 79 VEVSADP----P---AEPEEGQWVSLEELDQY 103 (114)
T ss_dssp EEEE-SS-----------TTEEEEEGGGGGGS
T ss_pred EEecCCC----C---CCCCCcEEEEHHHHhhC
Confidence 5443332 1 13467889999999873
No 95
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=98.07 E-value=7.3e-06 Score=70.28 Aligned_cols=105 Identities=14% Similarity=0.228 Sum_probs=73.7
Q ss_pred cEEEEEEEeCCCCEEEEEEeeC-----CCcEEc-ccccCCCCCCHHHHHHHHHHHHhCCcccc--eee-eee--eeec--
Q 020742 108 PVTGAIILDETYERCILVKGWK-----GSSWSF-PRGKKNKDEEDHACAIREVQEETGFDVSK--LLN-KDE--FIEK-- 174 (322)
Q Consensus 108 ~v~g~Iv~~~~~~kvLLvrr~~-----~~~w~f-PgG~ie~gEs~~eaA~REv~EETGl~v~~--l~~-~~~--~~~~-- 174 (322)
.+..+.|+|+++ ++||.||.. .+.|.- -.||--+||+..+||+|-+.+|+||++.. ... +.. |...
T Consensus 34 rAFS~~lFne~g-~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~ 112 (185)
T COG1443 34 RAFSSFLFNERG-QLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAADP 112 (185)
T ss_pred hhhheeEECCCC-ceeeehhhhhcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCccccccceEEeccCC
Confidence 456789999985 899998864 566654 46888899999999999999999999883 221 111 2111
Q ss_pred --ccCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 175 --IFGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 175 --~~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
...+....++++.... .+.+ +++|+.+++|++.+++.++
T Consensus 113 ~~~~E~Eic~V~~~~~~~---~~~~-npdEV~~~~wv~~e~l~~~ 153 (185)
T COG1443 113 DGIVENEICPVLAARLDS---ALDP-NPDEVMDYRWVSPEDLKEM 153 (185)
T ss_pred CCcceeeeeeEEEEeecC---CCCC-ChHHhhheeccCHHHHHHh
Confidence 1234455555554332 2333 4699999999999999874
No 96
>PLN02839 nudix hydrolase
Probab=97.98 E-value=3.5e-05 Score=73.90 Aligned_cols=95 Identities=9% Similarity=0.090 Sum_probs=61.8
Q ss_pred CEEEEEEeeC-----CCcEEc-ccccCCCCCCHHHHHHHHHHHHhCCccc---ceeeeeee--ee-cccC--eEEEEEEE
Q 020742 120 ERCILVKGWK-----GSSWSF-PRGKKNKDEEDHACAIREVQEETGFDVS---KLLNKDEF--IE-KIFG--QQRVRLYI 185 (322)
Q Consensus 120 ~kvLLvrr~~-----~~~w~f-PgG~ie~gEs~~eaA~REv~EETGl~v~---~l~~~~~~--~~-~~~~--~~~~~~y~ 185 (322)
.++.+.||.. +|+|+- .+|++..||++.+|++||+.||.|+... .+...+.. .. ...+ .....+|-
T Consensus 218 ~~lWV~RRS~tK~t~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~~~~~~~G~VsY~~~~~~g~~~evly~YD 297 (372)
T PLN02839 218 KFLWIGKRSLSKSTYPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIADRAIAVGAVSYMDIDQYCFKRDVLFCYD 297 (372)
T ss_pred eEEEeeccCCCCCCCCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHHhcceEeEEEEEEEEcCCccccCEEEEee
Confidence 4677777654 678855 7899999999999999999999999755 23333332 11 1111 12222333
Q ss_pred EEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742 186 IAGVRDDTAFAPQTKKEISEIAWQRLDELQP 216 (322)
Q Consensus 186 ~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~ 216 (322)
+ .++.+....+ .+.|+.++.+++++++.+
T Consensus 298 L-eLP~df~P~~-qDGEVe~F~Lm~v~EV~~ 326 (372)
T PLN02839 298 L-ELPQDFVPKN-QDGEVESFKLIPVAQVAN 326 (372)
T ss_pred e-ecCCccccCC-CccceeEEEEecHHHHHH
Confidence 2 2233332233 468999999999999976
No 97
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=97.42 E-value=0.00031 Score=65.62 Aligned_cols=70 Identities=11% Similarity=0.091 Sum_probs=52.6
Q ss_pred CccCCCCCCcchHHHHHHHHhCCCCcccccccchhHHHhhhcCCcccccEEEEEEEeCCCCEEEEEEeeC----CCcEEc
Q 020742 60 SVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWK----GSSWSF 135 (322)
Q Consensus 60 ~~~~~p~l~~~~l~~f~~~l~~~~~~l~~~~~~~~~~~~~~~~y~~~v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~f 135 (322)
|++++|.|..|++++.|.....+....+|+..+ ++.........+++.+.+ +++||++|.. +|.|+|
T Consensus 188 C~~~~P~C~~Cpl~~~C~~~~~~~~~~~p~~~~--------~~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~gl~~~ 258 (275)
T TIGR01084 188 CTRKKPKCDLCPLQDFCLAYQQGTWEEYPVKKP--------KAAPPERTTYFLVLQNYD-GEVLLEQRPEKGLWGGLYCF 258 (275)
T ss_pred cCCCCCCCCCCCChhhCHHHHcCCHhhcCCCCC--------CCCCCeEEEEEEEEEeCC-CeEEEEeCCCCchhhccccC
Confidence 888999999999999999988888887876654 333333444445555544 4899999865 899999
Q ss_pred ccc
Q 020742 136 PRG 138 (322)
Q Consensus 136 PgG 138 (322)
|+.
T Consensus 259 p~~ 261 (275)
T TIGR01084 259 PQF 261 (275)
T ss_pred CCC
Confidence 974
No 98
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=97.36 E-value=0.00056 Score=63.35 Aligned_cols=86 Identities=20% Similarity=0.337 Sum_probs=65.4
Q ss_pred CcccccEEEEEEEeCCCCEEEEEEeeC-----------------------------CCcEEcccccCCCCCCHHHHHHHH
Q 020742 103 YKVRVPVTGAIILDETYERCILVKGWK-----------------------------GSSWSFPRGKKNKDEEDHACAIRE 153 (322)
Q Consensus 103 y~~~v~v~g~Iv~~~~~~kvLLvrr~~-----------------------------~~~w~fPgG~ie~gEs~~eaA~RE 153 (322)
+..++..+.+|+++.+..++||||+.+ +-..++-+|-|+++-++.+-|..|
T Consensus 22 ~~q~~~~v~ill~~r~~eq~l~vrqfr~ai~~~~~s~~~~~~~~~~~d~~~~~~e~g~tielc~g~idke~s~~eia~ee 101 (405)
T KOG4432|consen 22 FNQKMSSVSILLFHRDLEQFLLVRQFRPAIFTASNSPENHGKEFDKIDWSSYDSETGYTIELCAGLIDKELSPREIASEE 101 (405)
T ss_pred HHhhccceEEEEEccchhhhehhhhhchhheecccCCCCCCcccccccHhhCCCccceeeeeeccccccccCHHHHhHHH
Confidence 344556778899999888999999866 113456689999999999999999
Q ss_pred HHHHhCCcccc--eeeeeeeee-cccCeEEEEEEEEEe
Q 020742 154 VQEETGFDVSK--LLNKDEFIE-KIFGQQRVRLYIIAG 188 (322)
Q Consensus 154 v~EETGl~v~~--l~~~~~~~~-~~~~~~~~~~y~~~~ 188 (322)
|.||+|+++.. ++.+.+|.. ......-.++|++..
T Consensus 102 v~eecgy~v~~d~l~hv~~~~~g~~~s~sa~~l~y~ei 139 (405)
T KOG4432|consen 102 VAEECGYRVDPDDLIHVITFVVGAHQSGSAQHLYYAEI 139 (405)
T ss_pred HHHHhCCcCChhHceEEEEEEeccccCccchheeeeec
Confidence 99999998865 777777654 233445667888743
No 99
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=97.20 E-value=0.00037 Score=61.96 Aligned_cols=39 Identities=28% Similarity=0.375 Sum_probs=36.1
Q ss_pred EEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhC
Q 020742 121 RCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETG 159 (322)
Q Consensus 121 kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETG 159 (322)
+++.|||...+.|.+|||.+++||-+..+.+||+.||.=
T Consensus 140 e~vavkr~d~~~WAiPGGmvdpGE~vs~tLkRef~eEa~ 178 (275)
T KOG4195|consen 140 EFVAVKRPDNGEWAIPGGMVDPGEKVSATLKREFGEEAM 178 (275)
T ss_pred EEEEEecCCCCcccCCCCcCCchhhhhHHHHHHHHHHHH
Confidence 678888888999999999999999999999999999963
No 100
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=97.07 E-value=0.005 Score=52.34 Aligned_cols=108 Identities=21% Similarity=0.357 Sum_probs=65.0
Q ss_pred CCcccccEEEEEEEeCCCCEEEEEEeeC-------CCcEEc-ccccCCCCC--CH-HH----HHHHHHHHHhCCcccc--
Q 020742 102 SYKVRVPVTGAIILDETYERCILVKGWK-------GSSWSF-PRGKKNKDE--ED-HA----CAIREVQEETGFDVSK-- 164 (322)
Q Consensus 102 ~y~~~v~v~g~Iv~~~~~~kvLLvrr~~-------~~~w~f-PgG~ie~gE--s~-~e----aA~REv~EETGl~v~~-- 164 (322)
.|+..+|- ++|.+++ +||+-.|-. .+.+++ -|||++.++ ++ .+ .+.||+.||.|+.-..
T Consensus 58 ~~KQ~IpY--vvi~~ed--evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q 133 (203)
T COG4112 58 TTKQVIPY--VVIMDED--EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQ 133 (203)
T ss_pred cccccccE--EEEecCC--EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhh
Confidence 45555553 6677776 899998865 467887 689999864 22 22 3779999999998554
Q ss_pred -eeeeeeeee--cccCeEEEE-EEEEEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742 165 -LLNKDEFIE--KIFGQQRVR-LYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQP 216 (322)
Q Consensus 165 -l~~~~~~~~--~~~~~~~~~-~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~ 216 (322)
+..++-... ...+...+. +|....-..+. .. .+.+...++|+.+.+|.+
T Consensus 134 ~~e~lGlINdd~neVgkVHiG~lf~~~~k~ndv--ev-KEkd~~~~kwik~~ele~ 186 (203)
T COG4112 134 ELEFLGLINDDTNEVGKVHIGALFLGRGKFNDV--EV-KEKDLFEWKWIKLEELEK 186 (203)
T ss_pred hheeeeeecCCCcccceEEEEEEEEeeccccce--ee-eecceeeeeeeeHHHHHH
Confidence 333332111 122333332 33333322221 11 245667899999999876
No 101
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=96.93 E-value=0.0054 Score=58.54 Aligned_cols=73 Identities=16% Similarity=0.201 Sum_probs=57.6
Q ss_pred CccCCCCCCcchHHHHHHHHhCCCCcccccccchhHHHhhhcCCcccccEEEEEEEeCCCCEEEEEEeeC----CCcEEc
Q 020742 60 SVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWK----GSSWSF 135 (322)
Q Consensus 60 ~~~~~p~l~~~~l~~f~~~l~~~~~~l~~~~~~~~~~~~~~~~y~~~v~v~g~Iv~~~~~~kvLLvrr~~----~~~w~f 135 (322)
|++.+|.|..|+++.+|....+|.+..+|.... +.-.+ ...++.++.+.++ +++|.++.. +|.|+|
T Consensus 197 Ct~~~P~C~~CPl~~~c~a~~~g~~~~~P~k~~--------k~~~~-~~~~~~~~~~~~~-~~~l~kr~~~gl~~gl~~f 266 (342)
T COG1194 197 CTAKKPKCSLCPLRDNCAAYRNGTPEKYPVKKP--------KKKLP-RRFAAFLILNRDG-EVLLEKRPEKGLLGGLWCF 266 (342)
T ss_pred hcCCCCCCCcCcchHHHHHHHcCCcccCCCcCc--------ccccc-hheeeEEEEccCc-chhhhhCcccCceeccccc
Confidence 888999999999999999999999988876654 22233 5556677777764 889988866 799999
Q ss_pred ccccCCC
Q 020742 136 PRGKKNK 142 (322)
Q Consensus 136 PgG~ie~ 142 (322)
|....+.
T Consensus 267 P~~e~~~ 273 (342)
T COG1194 267 PQFEDEA 273 (342)
T ss_pred ccccccc
Confidence 9987654
No 102
>PRK13910 DNA glycosylase MutY; Provisional
Probab=96.85 E-value=0.012 Score=55.37 Aligned_cols=65 Identities=12% Similarity=-0.006 Sum_probs=44.0
Q ss_pred CccCCCCCCcchHHHHHHHHhCCCCcccccccchhHHHhhhcCCcccccEEEEEEEeCCCCEEEEEEeeC---CCcEEcc
Q 020742 60 SVENNPSLKSFTLKEFTSLMFNSCDVLRPYVAHIDDIFKDFTSYKVRVPVTGAIILDETYERCILVKGWK---GSSWSFP 136 (322)
Q Consensus 60 ~~~~~p~l~~~~l~~f~~~l~~~~~~l~~~~~~~~~~~~~~~~y~~~v~v~g~Iv~~~~~~kvLLvrr~~---~~~w~fP 136 (322)
|++ .|.|..|+++++|....++..... .. ++.+.......+++.++ +++||.||.. +|+|+||
T Consensus 151 C~~-~P~C~~CPl~~~C~~~~~~~~~~~--~~---------kk~~~~~~~~~~~~~~~--~~~ll~kr~~~l~~gl~~fP 216 (289)
T PRK13910 151 CSP-KPKCAICPLNPYCLGKNNPEKHTL--KK---------KQEIVQEERYLGVVIQN--NQIALEKIEQKLYLGMHHFP 216 (289)
T ss_pred cCC-CCCCCCCcChhhhhhhhcCCcccc--CC---------CCCCCceEEEEEEEEEC--CEEEEEECCCchhcccccCC
Confidence 777 699999999999998877766421 11 22223333334444543 3899999854 8999999
Q ss_pred cc
Q 020742 137 RG 138 (322)
Q Consensus 137 gG 138 (322)
..
T Consensus 217 ~~ 218 (289)
T PRK13910 217 NL 218 (289)
T ss_pred CC
Confidence 63
No 103
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=96.68 E-value=0.008 Score=55.85 Aligned_cols=112 Identities=14% Similarity=0.190 Sum_probs=73.9
Q ss_pred cccEEEEEEEeCCCCEEEEEEeeC----CC---------------------------cEEcccccCCCCCCHHHHHHHHH
Q 020742 106 RVPVTGAIILDETYERCILVKGWK----GS---------------------------SWSFPRGKKNKDEEDHACAIREV 154 (322)
Q Consensus 106 ~v~v~g~Iv~~~~~~kvLLvrr~~----~~---------------------------~w~fPgG~ie~gEs~~eaA~REv 154 (322)
....+.+|++|....+++|+|+.+ .| ..++-.|.|+..-+..+-|.||.
T Consensus 228 ~hdSvt~iL~n~srk~LVlvqqfRpaVy~G~~~~~~~g~~~~vDe~~~~e~~PaigvTlELcag~Vd~p~s~~e~a~~e~ 307 (405)
T KOG4432|consen 228 CHDSVTCILVNMSRKELVLVQQFRPAVYVGKNRFLKEGIGKPVDEIDFSESDPAIGVTLELCAGRVDDPFSDPEKAARES 307 (405)
T ss_pred CCCceEEEEEeccchheehhhhcCcceeecceeecccCCCCcccccccccCCccceeeeeeecccCCCCcccHHHHHHHH
Confidence 345678888887766888888766 11 23444678887788999999999
Q ss_pred HHHhCCcccc--eeeeeeeee-cccCeEEEEEEEEEeecCC--CC-CCCCCccceeeEEEEeccccccc
Q 020742 155 QEETGFDVSK--LLNKDEFIE-KIFGQQRVRLYIIAGVRDD--TA-FAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 155 ~EETGl~v~~--l~~~~~~~~-~~~~~~~~~~y~~~~~~~~--~~-~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
.||+|+++.. +..+..|+. .+.......+|++...+.. .. .-..+++|..++.-+++++++.+
T Consensus 308 veecGYdlp~~~~k~va~y~sGVG~SG~~QTmfy~eVTdA~rsgpGgg~~ee~E~IEvv~lsle~a~~~ 376 (405)
T KOG4432|consen 308 VEECGYDLPEDSFKLVAKYISGVGQSGDTQTMFYVEVTDARRSGPGGGEKEEDEDIEVVRLSLEDAPSL 376 (405)
T ss_pred HHHhCCCCCHHHHhhhheeecccCCcCCeeEEEEEEeehhhccCCCCCcccccceeeEEEechhhhhHH
Confidence 9999999864 444444443 2233344456665433321 00 11234568888889999999985
No 104
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=96.63 E-value=0.0045 Score=54.28 Aligned_cols=70 Identities=14% Similarity=0.284 Sum_probs=49.7
Q ss_pred chhHHHhhhcCCcccccEEEEEEEeCCC-CEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhCCcc
Q 020742 92 HIDDIFKDFTSYKVRVPVTGAIILDETY-ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETGFDV 162 (322)
Q Consensus 92 ~~~~~~~~~~~y~~~v~v~g~Iv~~~~~-~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETGl~v 162 (322)
.+..+..+|.+.-.+..|.|+++++..+ -+|||.|.. ...|.+|||++..||+..++..|.+.+-.|..-
T Consensus 29 rl~rl~~~y~~~GmRrsVe~Vllvh~h~~PHvLLLq~~-~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~ 99 (188)
T PF13869_consen 29 RLQRLKENYEKEGMRRSVEGVLLVHEHGHPHVLLLQIG-NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPED 99 (188)
T ss_dssp HHHHHHHHHHHHSSEEEEEEEEEEEETTEEEEEEEEET-TTEEE-SEEE--TT--HHHHHHHHHHHHHB-SS
T ss_pred HHHHHHHHHHHhCCceEEEEEEEEecCCCcEEEEEecc-CccccCCccEeCCCCChhHHHHHHHHHHcCCCc
Confidence 3444555566666677788888887653 279999854 569999999999999999999999999998764
No 105
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.04 E-value=0.071 Score=47.08 Aligned_cols=106 Identities=18% Similarity=0.295 Sum_probs=64.4
Q ss_pred ccEEEEEEEeCCCCEEEEEEeeCCCcEEccc--------------ccCCC--CCCHHHHHHHHHHHHhCCcccce-----
Q 020742 107 VPVTGAIILDETYERCILVKGWKGSSWSFPR--------------GKKNK--DEEDHACAIREVQEETGFDVSKL----- 165 (322)
Q Consensus 107 v~v~g~Iv~~~~~~kvLLvrr~~~~~w~fPg--------------G~ie~--gEs~~eaA~REv~EETGl~v~~l----- 165 (322)
..+..+++++..+ ++||.||.. ....||+ |..+. +.....||+|-+.-|+||..+.+
T Consensus 52 HRaFSVFlFns~~-~lLlQqRS~-~KitFP~~~TNtccSHPL~~~~el~~~d~lGVr~AAqRkL~~ELGIp~e~v~pee~ 129 (225)
T KOG0142|consen 52 HRAFSVFLFNSKN-ELLLQQRSD-EKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEF 129 (225)
T ss_pred hheeeEEEecCcc-hHHHhhhcc-ccccccchhhhhhhcCcCCChhhhccCchHHHHHHHHHHHHHhhCCCccccCHHHc
Confidence 4567899999885 889888764 3344443 11111 23468899999999999987643
Q ss_pred eeeeeeee--cc---cCeEEEEEEEEEeecCCCCCCCCCccceeeEEEEeccccccc
Q 020742 166 LNKDEFIE--KI---FGQQRVRLYIIAGVRDDTAFAPQTKKEISEIAWQRLDELQPA 217 (322)
Q Consensus 166 ~~~~~~~~--~~---~~~~~~~~y~~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~~ 217 (322)
..+..+.. .+ .+.+.+.+ ++-... +....| +++|+.+++|++.++|..+
T Consensus 130 ~~ltrihYkA~sdg~wGEhEiDY-iL~~~~-~~~~nP-npnEv~e~ryvs~eelkel 183 (225)
T KOG0142|consen 130 NFLTRIHYKAPSDGIWGEHEIDY-ILFLVK-DVTLNP-NPNEVSEIRYVSREELKEL 183 (225)
T ss_pred ccceeeeeecCCCCCcccceeeE-EEEEec-cCCCCC-ChhhhhHhheecHHHHHHH
Confidence 33333221 11 22232222 221122 233333 4699999999999999875
No 106
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=92.59 E-value=0.38 Score=41.37 Aligned_cols=63 Identities=19% Similarity=0.328 Sum_probs=48.9
Q ss_pred HHhhhcCCcccccEEEEEEEeCCC-CEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHHHHhC
Q 020742 96 IFKDFTSYKVRVPVTGAIILDETY-ERCILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQEETG 159 (322)
Q Consensus 96 ~~~~~~~y~~~v~v~g~Iv~~~~~-~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~EETG 159 (322)
+-.+|.+--.+..|-|++++.+.. -+|||.|-. ...+.+|||..++||+-.+...|-+.|-.|
T Consensus 59 mk~ey~k~gmRrsvegvlivheH~lPHvLLLQig-~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 59 MKIEYMKEGMRRSVEGVLIVHEHNLPHVLLLQIG-NTFFKLPGGRLRPGEDEADGLKRLLTESLG 122 (221)
T ss_pred HHHHHHhhhhhheeeeeEEEeecCCCeEEEEeeC-CEEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence 333444555566777888877652 388888643 578899999999999999999999999999
No 107
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=91.89 E-value=0.64 Score=42.52 Aligned_cols=92 Identities=20% Similarity=0.248 Sum_probs=58.0
Q ss_pred EEEEEEeeC--CCcEEcccccC-CCCCCHHHHHHHHHHHHhCCccccee----eeeeeee--c-ccC-----eEEEEEEE
Q 020742 121 RCILVKGWK--GSSWSFPRGKK-NKDEEDHACAIREVQEETGFDVSKLL----NKDEFIE--K-IFG-----QQRVRLYI 185 (322)
Q Consensus 121 kvLLvrr~~--~~~w~fPgG~i-e~gEs~~eaA~REv~EETGl~v~~l~----~~~~~~~--~-~~~-----~~~~~~y~ 185 (322)
=+|||++.- .+.|.||-+.. +.++++..+|.|++.+-.|=....+. .++.+.. + ... ...+.+|.
T Consensus 140 LyLLV~~k~g~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~ff~k 219 (263)
T KOG4548|consen 140 LYLLVKRKFGKSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSKVFFFK 219 (263)
T ss_pred EEEEEeeccCccceeeCCCcccCCccchHHHHHHHHHHHHhcchhhhheeccCccccccccCcccccccccccceeEEee
Confidence 588998552 68999999999 89999999999999999996655421 1121110 0 000 12233444
Q ss_pred EEeecCCCCCCCCCccceeeEEEEecccccc
Q 020742 186 IAGVRDDTAFAPQTKKEISEIAWQRLDELQP 216 (322)
Q Consensus 186 ~~~~~~~~~~~~~~~~Ei~~~~Wv~ldeL~~ 216 (322)
+..+.++ . +...-..++.|++-++|.+
T Consensus 220 ~~lv~~~-~---~kn~n~edfvWvTkdel~e 246 (263)
T KOG4548|consen 220 ASLVANS-N---QKNQNKEDFVWVTKDELGE 246 (263)
T ss_pred eeecccc-c---hhcccccceEEechHHHhh
Confidence 4444442 1 1123334599999999987
No 108
>PF14443 DBC1: DBC1
Probab=84.22 E-value=2.8 Score=34.49 Aligned_cols=44 Identities=30% Similarity=0.379 Sum_probs=31.5
Q ss_pred EEEEEEeeC-----CCcEEcc--cccCCC-CCCHHHHHHHHHHHHhCCcccc
Q 020742 121 RCILVKGWK-----GSSWSFP--RGKKNK-DEEDHACAIREVQEETGFDVSK 164 (322)
Q Consensus 121 kvLLvrr~~-----~~~w~fP--gG~ie~-gEs~~eaA~REv~EETGl~v~~ 164 (322)
|+|+.++.+ +|.|+-- ||-.+. ...+..+|+|=++|-||++.+.
T Consensus 9 kFlv~~k~ke~~aiGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~ 60 (126)
T PF14443_consen 9 KFLVGKKDKEIMAIGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSN 60 (126)
T ss_pred eeEEeecCceEEecCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhh
Confidence 445554433 6778654 555555 3567899999999999999986
No 109
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=59.83 E-value=22 Score=32.69 Aligned_cols=92 Identities=14% Similarity=0.143 Sum_probs=53.8
Q ss_pred EEEEEEeeC-----CCcEE-cccccCCCCCCHHHHHHHHHHHHhCCcccc---eeeeee--eee-c---ccCeEEEEEEE
Q 020742 121 RCILVKGWK-----GSSWS-FPRGKKNKDEEDHACAIREVQEETGFDVSK---LLNKDE--FIE-K---IFGQQRVRLYI 185 (322)
Q Consensus 121 kvLLvrr~~-----~~~w~-fPgG~ie~gEs~~eaA~REv~EETGl~v~~---l~~~~~--~~~-~---~~~~~~~~~y~ 185 (322)
++.+-||.+ ++.|+ .-+|++.-|-...++|+.|..||..++... +...+. |+. . ......-.+|-
T Consensus 149 ~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~~~~pe~qYVfD 228 (306)
T KOG4313|consen 149 CIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQGLFPETQYVFD 228 (306)
T ss_pred EEEecccCCccccCcchhhhhhccccccCchHHHHHHHHHHHhcCCchhhHhcceecceeEEEeeehhhccCccceEEEe
Confidence 455666654 45554 368999999999999999999999998732 333332 221 1 11122222332
Q ss_pred EEeecCCCCCCCC-CccceeeEEEEeccccc
Q 020742 186 IAGVRDDTAFAPQ-TKKEISEIAWQRLDELQ 215 (322)
Q Consensus 186 ~~~~~~~~~~~~~-~~~Ei~~~~Wv~ldeL~ 215 (322)
+ .++.+ +.|+ .+.|+..+.-+++.+..
T Consensus 229 L-~l~~d--~iP~~nDGEV~~F~Lltl~~~v 256 (306)
T KOG4313|consen 229 L-ELPLD--FIPQNNDGEVQAFELLTLKDCV 256 (306)
T ss_pred c-cCchh--hcCCCCCCceeeEeeecHHHHH
Confidence 2 22222 3333 35677777777766654
No 110
>COG4111 Uncharacterized conserved protein [General function prediction only]
Probab=53.77 E-value=1e+02 Score=28.63 Aligned_cols=55 Identities=15% Similarity=0.238 Sum_probs=39.6
Q ss_pred EeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHHH-HHHHhCCcccceeeeeeeee
Q 020742 115 LDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIRE-VQEETGFDVSKLLNKDEFIE 173 (322)
Q Consensus 115 ~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~RE-v~EETGl~v~~l~~~~~~~~ 173 (322)
+++++-+||-|++.. .+|-|-.++.---.++-.|+ |.+.|+.....+..+.+|..
T Consensus 32 v~~~~p~VLtV~q~~----aLP~GPfep~hrslq~glr~wV~~qT~~plGYiEQLYTF~D 87 (322)
T COG4111 32 VTDGGPRVLTVRQGA----ALPSGPFEPAHRSLQAGLRAWVEKQTSQPLGYIEQLYTFAD 87 (322)
T ss_pred EcCCCceEEEecccc----cCCCCCCchHHHHHHHHHHHHHHHHhcCccchHHhhhhhcc
Confidence 455545888887643 29999999976666777776 46669988888777777654
No 111
>PF03487 IL13: Interleukin-13; InterPro: IPR020470 Interleukin-13 (IL-13) is a pleiotropic cytokine which may be important in the regulation of the inflammatory and immune responses []. It inhibits inflammatory cytokine production and synergises with IL-2 in regulating interferon-gamma synthesis. The sequences of IL-4 and IL-13 are distantly related.; PDB: 3G6D_A 3L5W_J 3BPO_A 1GA3_A 1IK0_A 3L5X_A 3L5Y_A 1IJZ_A 3LB6_B.
Probab=44.85 E-value=21 Score=23.31 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=12.0
Q ss_pred cccCCCCCCHHHHHHHHHHHHh
Q 020742 137 RGKKNKDEEDHACAIREVQEET 158 (322)
Q Consensus 137 gG~ie~gEs~~eaA~REv~EET 158 (322)
||-..+|--+...|.||+-||.
T Consensus 15 ggLasPgPvp~~~alkELIeEL 36 (43)
T PF03487_consen 15 GGLASPGPVPSSTALKELIEEL 36 (43)
T ss_dssp --------S-HHHHHHHHHHHH
T ss_pred cccCCCCCCCchHHHHHHHHHH
Confidence 6777788888899999999996
No 112
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=35.41 E-value=64 Score=22.92 Aligned_cols=31 Identities=23% Similarity=0.227 Sum_probs=18.8
Q ss_pred EEEEEeeCCCcEEcccccCCCCCCHHHHHHHHHH
Q 020742 122 CILVKGWKGSSWSFPRGKKNKDEEDHACAIREVQ 155 (322)
Q Consensus 122 vLLvrr~~~~~w~fPgG~ie~gEs~~eaA~REv~ 155 (322)
+-|+.......|-+|||++-.+-. .|.|+.+
T Consensus 13 itl~ys~~~~GWl~Pgg~vi~NPl---kAqR~AE 43 (60)
T PF07026_consen 13 ITLPYSHFKNGWLMPGGKVITNPL---KAQRLAE 43 (60)
T ss_pred EEEEEEeccceeecCCCeeEcCHH---HHHHHHH
Confidence 344433335669999999987543 3455443
No 113
>PF12860 PAS_7: PAS fold
Probab=27.21 E-value=41 Score=26.10 Aligned_cols=42 Identities=12% Similarity=0.109 Sum_probs=32.9
Q ss_pred EEEEEEeCCCCEEEEEEeeCCCcEEcccccCCCCCCHHHHHHH
Q 020742 110 TGAIILDETYERCILVKGWKGSSWSFPRGKKNKDEEDHACAIR 152 (322)
Q Consensus 110 ~g~Iv~~~~~~kvLLvrr~~~~~w~fPgG~ie~gEs~~eaA~R 152 (322)
.|++++|.++ ++++..+.-...|.+|...+..|-+..+.+.+
T Consensus 6 ~Gv~v~D~~~-rl~~~N~~~~~l~~~~~~~~~~G~~~~~l~~~ 47 (115)
T PF12860_consen 6 QGVAVFDSDG-RLVFWNQRFRELFGLPPEMLRPGASFRDLLRR 47 (115)
T ss_pred ceEEEEcCCC-eEEeEcHHHHHHhCCCHHHhcCCCCHHHHHHH
Confidence 3788898875 88888765578999999999999887665543
Done!