BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020745
(322 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P23381|SYWC_HUMAN Tryptophan--tRNA ligase, cytoplasmic OS=Homo sapiens GN=WARS PE=1
SV=2
Length = 471
Score = 416 bits (1068), Expect = e-115, Method: Compositional matrix adjust.
Identities = 191/294 (64%), Positives = 239/294 (81%), Gaps = 4/294 (1%)
Query: 11 EEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFF 68
E E V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF
Sbjct: 79 EAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFF 138
Query: 69 AHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD 128
+HRD+N +LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDD
Sbjct: 139 SHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDD 198
Query: 129 EKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCV 186
EK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K V
Sbjct: 199 EKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHV 258
Query: 187 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFR 246
T+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F + ++CLIPCAIDQDPYFR
Sbjct: 259 TFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFR 318
Query: 247 MTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
MTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK IK K+
Sbjct: 319 MTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKV 372
>sp|Q5R4J1|SYWC_PONAB Tryptophan--tRNA ligase, cytoplasmic OS=Pongo abelii GN=WARS PE=2
SV=2
Length = 472
Score = 415 bits (1067), Expect = e-115, Method: Compositional matrix adjust.
Identities = 191/294 (64%), Positives = 239/294 (81%), Gaps = 4/294 (1%)
Query: 11 EEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFF 68
E E V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF
Sbjct: 80 EAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHRFLRRGIFF 139
Query: 69 AHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD 128
+HRD+N +LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDD
Sbjct: 140 SHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDD 199
Query: 129 EKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCV 186
EK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K V
Sbjct: 200 EKYLWKDLTLDQAYSYAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHV 259
Query: 187 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFR 246
T+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F + ++CLIPCAIDQDPYFR
Sbjct: 260 TFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFR 319
Query: 247 MTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
MTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK IK K+
Sbjct: 320 MTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKV 373
>sp|P23612|SYWC_RABIT Tryptophan--tRNA ligase, cytoplasmic OS=Oryctolagus cuniculus
GN=WARS PE=2 SV=3
Length = 475
Score = 414 bits (1063), Expect = e-115, Method: Compositional matrix adjust.
Identities = 192/303 (63%), Positives = 245/303 (80%), Gaps = 4/303 (1%)
Query: 2 DKNEEKQREEEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPH 59
D + + + +++E V PW V SS+ IDYDKLI +FG ++D+ LV+R++R TG+ PH
Sbjct: 74 DSHGDPEAVDDKEDFVDPWTVRTSSAKGIDYDKLIVQFGSSKIDKELVNRIERATGQRPH 133
Query: 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKV 119
FLRRG+FF+HRD+N +LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F V
Sbjct: 134 RFLRRGIFFSHRDMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFDV 193
Query: 120 PLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA--FYK 177
PLV+Q++DDEK +WK+L++E+ ENAKDIIACGFDV KTFIFSD DY+G + FYK
Sbjct: 194 PLVVQMSDDEKYLWKDLTLEQVYGYTLENAKDIIACGFDVNKTFIFSDLDYMGMSPGFYK 253
Query: 178 NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237
N+VK+ K VT+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F G+ ++CLIPC
Sbjct: 254 NVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFHGQADIQCLIPC 313
Query: 238 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 297
AIDQDPYFRMTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK IK
Sbjct: 314 AIDQDPYFRMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIK 373
Query: 298 NKI 300
K+
Sbjct: 374 TKV 376
>sp|P17248|SYWC_BOVIN Tryptophan--tRNA ligase, cytoplasmic OS=Bos taurus GN=WARS PE=1
SV=3
Length = 476
Score = 411 bits (1057), Expect = e-114, Method: Compositional matrix adjust.
Identities = 192/294 (65%), Positives = 240/294 (81%), Gaps = 4/294 (1%)
Query: 11 EEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFF 68
E E V PW V SS+ IDYDKLI +FG ++D+ LV+R++R TG+ PH FLRRG+FF
Sbjct: 84 EADEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELVNRIERATGQRPHRFLRRGIFF 143
Query: 69 AHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD 128
+HRD++ ILDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDD
Sbjct: 144 SHRDMHQILDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDD 203
Query: 129 EKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA--FYKNMVKVAKCV 186
EK +WK+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G + FYKN+VK+ K V
Sbjct: 204 EKYLWKDLTLDQAYGYAVENAKDIIACGFDINKTFIFSDLDYMGMSPGFYKNVVKIQKHV 263
Query: 187 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFR 246
T+N+V GIFGFT D IGK+SFP +QA PSF +SFP +F + ++CLIPCAIDQDPYFR
Sbjct: 264 TFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDVQCLIPCAIDQDPYFR 323
Query: 247 MTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
MTRDVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK IK K+
Sbjct: 324 MTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKV 377
>sp|Q6P7B0|SYWC_RAT Tryptophan--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Wars
PE=1 SV=2
Length = 481
Score = 410 bits (1054), Expect = e-114, Method: Compositional matrix adjust.
Identities = 193/301 (64%), Positives = 242/301 (80%), Gaps = 4/301 (1%)
Query: 4 NEEKQREEEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVF 61
N + + E V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH F
Sbjct: 76 NGDPDATKASEDFVDPWTVRTSSAKGIDYDKLIVQFGSSKIDKELINRIERATGQRPHRF 135
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPL 121
LRRG+FF+HRD+N ILDAYE + FYLYTGRGPSSEA+HLGHLVPF+FTK+LQD F VPL
Sbjct: 136 LRRGIFFSHRDMNQILDAYENKKPFYLYTGRGPSSEAMHLGHLVPFIFTKWLQDVFDVPL 195
Query: 122 VIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA--FYKNM 179
VIQ++DDEK +WK+L++E++ ENAKDIIACGFDV KTFIFSD +Y+G + FYKN+
Sbjct: 196 VIQMSDDEKYLWKDLTLEQAYSYTVENAKDIIACGFDVNKTFIFSDLEYMGQSPGFYKNV 255
Query: 180 VKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 239
VK+ K VT+N+V GIFGFT D IGK+SFP VQA PSF +SFP +F + ++CLIPCAI
Sbjct: 256 VKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKIFRDRTDIQCLIPCAI 315
Query: 240 DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 299
DQDPYFRMTRDVAPRIG+ KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK IK+K
Sbjct: 316 DQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKSK 375
Query: 300 I 300
+
Sbjct: 376 V 376
>sp|P32921|SYWC_MOUSE Tryptophan--tRNA ligase, cytoplasmic OS=Mus musculus GN=Wars PE=1
SV=2
Length = 481
Score = 409 bits (1052), Expect = e-113, Method: Compositional matrix adjust.
Identities = 191/302 (63%), Positives = 243/302 (80%), Gaps = 4/302 (1%)
Query: 3 KNEEKQREEEREQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHV 60
+N + + E V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH
Sbjct: 75 RNCDSDATKASEDFVDPWTVRTSSAKGIDYDKLIVQFGSSKIDKELINRIERATGQRPHR 134
Query: 61 FLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVP 120
FLRRG+FF+HRD+N ILDAYE + FYLYTGRGPSSEA+HLGHLVPF+FTK+LQD F VP
Sbjct: 135 FLRRGIFFSHRDMNQILDAYENKKPFYLYTGRGPSSEAMHLGHLVPFIFTKWLQDVFNVP 194
Query: 121 LVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA--FYKN 178
LVIQ++DDEK +WK+L++E++ ENAKDIIACGFD+ KTFIFSD +Y+G + FY+N
Sbjct: 195 LVIQMSDDEKYLWKDLTLEQAYSYTVENAKDIIACGFDINKTFIFSDLEYMGQSPGFYRN 254
Query: 179 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA 238
+VK+ K VT+N+V GIFGFT D IGK+SFP VQA PSF +SFP +F + ++CLIPCA
Sbjct: 255 VVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAVQAAPSFSNSFPKIFRDRTDIQCLIPCA 314
Query: 239 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 298
IDQDPYFRMTRDVAPRIG+ KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK IK+
Sbjct: 315 IDQDPYFRMTRDVAPRIGHPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKS 374
Query: 299 KI 300
K+
Sbjct: 375 KV 376
>sp|Q55DZ8|SYWC_DICDI Tryptophan--tRNA ligase, cytoplasmic OS=Dictyostelium discoideum
GN=trpS PE=3 SV=1
Length = 400
Score = 377 bits (967), Expect = e-104, Method: Compositional matrix adjust.
Identities = 171/292 (58%), Positives = 225/292 (77%), Gaps = 7/292 (2%)
Query: 15 QVVSPWEVSSS--GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRD 72
QV++PWEV ++ G +DY KL+D+FG + + L+ R +++TG+ H FLRRG+FF+HRD
Sbjct: 14 QVITPWEVEAAPGGSVDYMKLVDQFGSTVISEELIARFEKVTGKRAHHFLRRGIFFSHRD 73
Query: 73 LNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCM 132
L +ILD +E G+K++LYTGRGPSS +LH GHL+PF FTKYLQDAF VPLV+Q+T+DEK +
Sbjct: 74 LKEILDHHESGKKWFLYTGRGPSSGSLHFGHLLPFTFTKYLQDAFNVPLVVQMTNDEKFL 133
Query: 133 WKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVV 192
WK++++EES + N KDIIA GFD+ KTFIFS+ +Y+ Y N++K+A+CV N++
Sbjct: 134 WKDMTLEESIKFTHNNVKDIIALGFDIQKTFIFSNLEYI-HHLYPNVLKIARCVNLNQIQ 192
Query: 193 GIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD----HLRCLIPCAIDQDPYFRMT 248
IFGF D IGK +FPPVQA P FP SFPH+F D ++RCLIPCAIDQDPYFRMT
Sbjct: 193 NIFGFKESDAIGKFTFPPVQAAPCFPDSFPHIFPLNDPEIKNIRCLIPCAIDQDPYFRMT 252
Query: 249 RDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
RD+A RIG+ KPALI S FFPALQG KMSASD NSA+Y++D+ +K+KI
Sbjct: 253 RDIAHRIGHQKPALIHSKFFPALQGHNTKMSASDTNSAVYLSDTPDQVKDKI 304
>sp|Q09692|SYWC_SCHPO Tryptophan--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=wrs1 PE=1 SV=1
Length = 395
Score = 369 bits (948), Expect = e-101, Method: Compositional matrix adjust.
Identities = 174/294 (59%), Positives = 226/294 (76%), Gaps = 7/294 (2%)
Query: 14 EQVVSPWEVSSS------GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVF 67
EQ+V+PW+V S IDY++LI +FG +++ ++R ++LTG+ PH+ LRRG F
Sbjct: 5 EQIVTPWDVKGSIVDGEEKGIDYERLIVQFGTRKITPEQLERFEKLTGKKPHLLLRRGAF 64
Query: 68 FAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127
F+HRD + ILD YE+ + FYLYTGRGPSS+++HLGH++PFMF K+LQD F+VPLVIQLTD
Sbjct: 65 FSHRDFDMILDRYEQKKPFYLYTGRGPSSDSMHLGHMIPFMFCKWLQDVFQVPLVIQLTD 124
Query: 128 DEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCV 186
DEK ++K +S+E+ QR ARENAKDIIA GFD KTFIF + YVGGAFY+N+V++AKC+
Sbjct: 125 DEKFLFKQGVSLEDCQRFARENAKDIIAVGFDPKKTFIFMNSTYVGGAFYQNVVRIAKCI 184
Query: 187 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFR 246
T N+ FGFT D IGK+ F +QA PSF SSFPH+F+G + CLIPCAIDQDPYFR
Sbjct: 185 TANQSKACFGFTDSDSIGKIHFASIQAAPSFSSSFPHIFNGAKDIPCLIPCAIDQDPYFR 244
Query: 247 MTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
+TRDV+ R+ + KPAL+ S FFPALQG KMSAS +SAI++TD+ IKNKI
Sbjct: 245 LTRDVSGRLKFKKPALLHSRFFPALQGPQSKMSASKDSSAIFMTDTPNKIKNKI 298
>sp|Q12109|SYWC_YEAST Tryptophan--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=WRS1 PE=1 SV=1
Length = 432
Score = 342 bits (877), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 161/296 (54%), Positives = 218/296 (73%), Gaps = 8/296 (2%)
Query: 13 REQVVSPWEVSS-------SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRG 65
+EQVV+PW+V + IDYDKLI +FG + +++ + R +++TGR PH FLR+G
Sbjct: 23 KEQVVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVTGREPHHFLRKG 82
Query: 66 VFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQL 125
+FF+ RD ILD YE+G+ F+LYTGRGPSS+++HLGH++PF+FTK+LQ+ F VPLVI+L
Sbjct: 83 LFFSERDFTKILDLYEQGKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIEL 142
Query: 126 TDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAK 184
TDDEK ++K+ L++ + + ARENAKDIIA GFD TFIFSD Y+GGAFY+ +V+V++
Sbjct: 143 TDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKNTFIFSDLQYMGGAFYETVVRVSR 202
Query: 185 CVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPY 244
+T + +FGF D IGK F +Q +FPSSFP++ D CLIPCAIDQDPY
Sbjct: 203 QITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPY 262
Query: 245 FRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
FR+ RDVA ++ Y KPAL+ S FFPALQG T KMSASD +AI++TD+ K I+ KI
Sbjct: 263 FRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKI 318
>sp|O96771|SYW_ENCCU Tryptophan--tRNA ligase OS=Encephalitozoon cuniculi (strain GB-M1)
GN=ECU11_0530 PE=1 SV=2
Length = 385
Score = 301 bits (770), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 143/294 (48%), Positives = 203/294 (69%), Gaps = 10/294 (3%)
Query: 14 EQVVSPW--EVSSSGK----IDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVF 67
EQ ++PW EV S+ + IDYDK+I++FGC++ +Q+L DR+++L+G+P H F RRG+
Sbjct: 3 EQRITPWDVEVVSTDEVPVAIDYDKIINQFGCEKFNQALADRLEKLSGKPAHYFFRRGIV 62
Query: 68 FAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127
FAHRD N +LD FYLYTGRGPSS+ +H+GH +PF+ KY+QDAFK+ LVIQ+TD
Sbjct: 63 FAHRDFNLLLDEIANNRPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITD 122
Query: 128 DEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVT 187
DEK +WK++ +E++ REN KDI+A GFD T+IFS+ + F +N++K++K +
Sbjct: 123 DEKFLWKSMRLEDAMAYGRENIKDIVALGFDPKLTYIFSNVE-ASHHFEENILKISKTIN 181
Query: 188 YNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRM 247
N+ + +FGF +IG+V FP + P F SSF F GK + CL+P A+DQDP+FR+
Sbjct: 182 LNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFR--FIGKGAM-CLVPAAVDQDPFFRL 238
Query: 248 TRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKII 301
RD A +G KP+ I S P L+G KMSASDPNS+IY+ D+ I+ KII
Sbjct: 239 ARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRKKII 292
>sp|Q4JBG7|SYW_SULAC Tryptophan--tRNA ligase OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=trpS PE=3 SV=1
Length = 381
Score = 267 bits (683), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 137/298 (45%), Positives = 191/298 (64%), Gaps = 15/298 (5%)
Query: 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLND 75
V+PWEV GK+DYDKLI +FG Q++ L +R +R HV LRR VFF+HRD +
Sbjct: 6 TVTPWEVK--GKVDYDKLIVQFGTQKMTSELKERAKRAINDELHVMLRRDVFFSHRDFDL 63
Query: 76 ILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK- 134
IL+ YEKG F+LYTGR PS +H+GHL+PF+FTK+LQ+ FKV + I++TDDEK +
Sbjct: 64 ILNDYEKGNGFFLYTGRAPSL-GMHIGHLIPFIFTKWLQEKFKVNVYIEITDDEKFLRNV 122
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGI 194
+ ++++++ + EN DIIA GFD KTFIF D +Y+ Y VK+AK +T+N+V
Sbjct: 123 DYTLDQTKEWSYENILDIIAVGFDPNKTFIFQDTEYIKN-MYPLSVKIAKKLTFNEVRAT 181
Query: 195 FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR 254
FG +IG + +P +Q VP+ +F + RCLIP IDQDPY+R+ RD+A
Sbjct: 182 FGLDTSSNIGIIFYPALQIVPT-------MFEKR---RCLIPAGIDQDPYWRLQRDIAES 231
Query: 255 IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQVCI 312
+GY K A I S F P L G GKMS+S P +AIY+TD K ++ KI+ + Q +
Sbjct: 232 LGYFKAAQIHSKFLPPLTGPEGKMSSSQPETAIYLTDDPKTVERKIMKYAFSGGQATV 289
>sp|Q8U453|SYW_PYRFU Tryptophan--tRNA ligase OS=Pyrococcus furiosus (strain ATCC 43587 /
DSM 3638 / JCM 8422 / Vc1) GN=trpS PE=3 SV=1
Length = 385
Score = 265 bits (676), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 138/290 (47%), Positives = 188/290 (64%), Gaps = 16/290 (5%)
Query: 12 EREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHR 71
E E V+PWEV G IDY+KLI++FG L L++R RLT +F RR FF+HR
Sbjct: 2 EEEFKVTPWEVE--GIIDYNKLIEQFGTSPLTDDLLERTARLTKSELPIFFRRKFFFSHR 59
Query: 72 DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKC 131
D + +LD YE+G+ F+LYTGRGPS +H+GH++PF TK+LQ+ F V L IQ+TDDEK
Sbjct: 60 DYDKVLDDYEQGKGFFLYTGRGPSG-PMHIGHIIPFFATKWLQEKFDVNLYIQITDDEKF 118
Query: 132 MWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNK 190
++K NL+ E+++ A +N DIIA GFD KTFIF + ++ Y+ + +AK + ++
Sbjct: 119 LFKENLTFEDTKYWAYQNILDIIAVGFDPDKTFIFQNSEFT--KIYEMAIPIAKKINFSM 176
Query: 191 VVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRD 250
+FGFT + IG + FP +QA P+F F K RCLIP AIDQDPY+R+ RD
Sbjct: 177 AKAVFGFTEQSKIGMIFFPAIQAAPTF-------FEKK---RCLIPAAIDQDPYWRLQRD 226
Query: 251 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
A +GY+K A + S FFP L G GKMSAS P +AIY+TD+ + KI
Sbjct: 227 FAESLGYYKTAALHSKFFPPLTGLEGKMSASKPETAIYLTDNPEEAGKKI 276
>sp|Q97ZX0|SYW_SULSO Tryptophan--tRNA ligase OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=trpS PE=3 SV=2
Length = 380
Score = 261 bits (666), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 136/300 (45%), Positives = 192/300 (64%), Gaps = 16/300 (5%)
Query: 14 EQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDL 73
E V+PWEV GK+DYDKLI +FG Q++ + L R++ L G HV LRR VFF+HRDL
Sbjct: 4 EFTVTPWEVK--GKVDYDKLIVQFGTQKITEELKQRIKNLAGDL-HVMLRRNVFFSHRDL 60
Query: 74 NDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMW 133
+ +L+ YEK + F+LYTGR PS +H+GHL+PF+FTK+LQ+ F L I++TDDEK M
Sbjct: 61 DLVLNDYEKSKGFFLYTGRAPSL-GMHIGHLIPFIFTKWLQEKFNANLYIEITDDEKYMR 119
Query: 134 K-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVV 192
++++++ A +N DIIA GF+ KTFIF D +Y+ Y VK+AK +T+++V
Sbjct: 120 NPEFTLDQTRSWAYDNILDIIAVGFNPDKTFIFQDTEYIRN-MYPITVKIAKKLTFSEVR 178
Query: 193 GIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVA 252
FG +IG + +P +Q P+ +F K RCLIP IDQDPY+R+ RD+A
Sbjct: 179 ATFGLDASSNIGLIFYPALQIAPT-------MFEKK---RCLIPAGIDQDPYWRLQRDIA 228
Query: 253 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQVCI 312
+GY+K A I S F P L G GKMS+S+P +AIY+ D K ++ KI+ + Q I
Sbjct: 229 ESLGYYKAAQIHSKFLPPLTGPEGKMSSSNPETAIYLVDDPKTVERKIMKYAFSGGQPTI 288
>sp|Q976M1|SYW_SULTO Tryptophan--tRNA ligase OS=Sulfolobus tokodaii (strain DSM 16993 /
JCM 10545 / NBRC 100140 / 7) GN=trpS PE=3 SV=2
Length = 381
Score = 259 bits (662), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 132/297 (44%), Positives = 191/297 (64%), Gaps = 15/297 (5%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
V+PWEV GK+DYDKLI +FG Q++ L ++++ + HV LRR VFF+HRDL+ +
Sbjct: 7 VTPWEVK--GKVDYDKLIVQFGTQKITSELKEKIKSIINDELHVMLRRDVFFSHRDLDLV 64
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-N 135
L Y+ G+ F+LYTGR PS +H+GHL+PF+FTK+LQD F V L I++TDDEK M
Sbjct: 65 LKDYQDGKGFFLYTGRAPSL-GMHIGHLIPFIFTKWLQDKFNVNLYIEITDDEKFMRNPE 123
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
+++++++ A +N DIIA GF+ KTFIF D +Y+ Y +K+AK +T+++V F
Sbjct: 124 YTLDQTRQWAYDNILDIIAVGFNPDKTFIFQDTEYIRN-MYPIAIKIAKKLTFSEVRATF 182
Query: 196 GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRI 255
G +IG + +P +Q P+ +F + RCLIP IDQDPY+R+ RD+A +
Sbjct: 183 GLDTSSNIGIIWYPALQIAPT-------MFEKR---RCLIPAGIDQDPYWRLQRDIAESL 232
Query: 256 GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQVCI 312
GY+K A I S F P L G GKMS+S P +AIY+TD K ++ KI+ + Q I
Sbjct: 233 GYYKAAQIHSKFLPPLTGPEGKMSSSQPETAIYLTDDPKTVERKIMKYAFSGGQPTI 289
>sp|Q9UY11|SYW_PYRAB Tryptophan--tRNA ligase OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=trpS PE=3 SV=1
Length = 385
Score = 255 bits (652), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 129/285 (45%), Positives = 183/285 (64%), Gaps = 16/285 (5%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
V+PWEV G +DY+KLI+ FG L + L+++ LT +F RR FF+HRD + +
Sbjct: 7 VTPWEVE--GVVDYNKLIEHFGTSPLTEELLEKTAELTKSELPLFFRRKFFFSHRDYDKV 64
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-N 135
L YE+G F+LYTGRGPS +H+GH++PF TK+LQ+ F V L IQ+TDDEK ++K N
Sbjct: 65 LQDYEEGRGFFLYTGRGPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKEN 123
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
L+ E+++ A EN DIIA GFD KTFIF + ++ Y+ + +AK + ++ +F
Sbjct: 124 LTFEDTKHWAYENILDIIAVGFDPDKTFIFQNSEFT--KIYEMAIPIAKKINFSMAKAVF 181
Query: 196 GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRI 255
GFT + IG + FP +Q P+F + RCLIP AIDQDPY+R+ RD A +
Sbjct: 182 GFTEQSKIGMIFFPAIQIAPTF----------FEKRRCLIPAAIDQDPYWRLQRDFAESL 231
Query: 256 GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
GY+K A I S F P+L +GKMSAS P +AIY+TDS + ++ K+
Sbjct: 232 GYYKTAAIHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKV 276
>sp|O59584|SYW_PYRHO Tryptophan--tRNA ligase OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=trpS PE=1 SV=2
Length = 386
Score = 254 bits (649), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 131/285 (45%), Positives = 184/285 (64%), Gaps = 16/285 (5%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
V+PWEV G +DYDKLI FG L + L+++ LT +F RR FF+HRD + I
Sbjct: 7 VTPWEVE--GVVDYDKLIKHFGTSPLTEDLLEKTAELTKSELPIFFRRKFFFSHRDYDLI 64
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-N 135
L YE+G F+LYTGRGPS +H+GH++PF TK+LQ+ F V L IQ+TDDEK ++K N
Sbjct: 65 LKDYEEGRGFFLYTGRGPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKEN 123
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
L+ ++++R A +N DIIA GFD KTFIF + ++ Y+ + +AK + ++ +F
Sbjct: 124 LTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFT--KIYEMAIPIAKKINFSMAKAVF 181
Query: 196 GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRI 255
GFT + IG + FP +Q P+F F K RCLIP AIDQDPY+R+ RD A +
Sbjct: 182 GFTEQSKIGMIFFPAIQIAPTF-------FERK---RCLIPAAIDQDPYWRLQRDFAESL 231
Query: 256 GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
GY+K A + S F P+L +GKMSAS P +AIY+TDS + ++ K+
Sbjct: 232 GYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKV 276
>sp|C6A032|SYW_THESM Tryptophan--tRNA ligase OS=Thermococcus sibiricus (strain MM 739 /
DSM 12597) GN=trpS PE=3 SV=1
Length = 384
Score = 249 bits (636), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 131/285 (45%), Positives = 181/285 (63%), Gaps = 16/285 (5%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
V+PWEV+ G +DY+KLI++FG L L+ + + LT + ++ +R FF+HRD + +
Sbjct: 6 VTPWEVT--GVVDYNKLIEEFGTTPLTDDLLKKTEELTKKELPMYFKRKFFFSHRDYDLV 63
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK-N 135
L YE G+ F+LYTGRGPS +H+GH++PF TK+LQ+ F V L +Q+TDDEK ++K
Sbjct: 64 LKDYEAGKGFFLYTGRGPSG-PMHIGHIIPFFATKWLQENFGVNLYVQITDDEKFLFKPQ 122
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
L+ E ++R A EN DIIA GFD KTFIF D ++ Y+ + +AK VTY+ +F
Sbjct: 123 LTFEGTKRWAYENILDIIAVGFDPDKTFIFQDSEFT--KIYEMAIPIAKKVTYSMAKAVF 180
Query: 196 GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRI 255
GF + IG + FP +QA P+F F K R LIP AIDQDPY+R+ RD A +
Sbjct: 181 GFNEQSKIGMIFFPAIQAAPTF-------FEEK---RSLIPAAIDQDPYWRIQRDFAESL 230
Query: 256 GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
GY+K A + S F P L G GKMSAS P +AIY+TD + KI
Sbjct: 231 GYYKTAALHSKFVPGLMGLGGKMSASKPETAIYLTDDPEEAGKKI 275
>sp|B6YUH1|SYW_THEON Tryptophan--tRNA ligase OS=Thermococcus onnurineus (strain NA1)
GN=trpS PE=3 SV=1
Length = 384
Score = 239 bits (610), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 128/285 (44%), Positives = 183/285 (64%), Gaps = 16/285 (5%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
V+PW+V G +DY+KLI++FG L L+++ +LT ++ RR FF+HRD + +
Sbjct: 6 VTPWDVE--GLVDYNKLIEEFGTSPLTDELLEKTAQLTKSELPLYFRRRFFFSHRDYDKV 63
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN- 135
L YE G+ F+LYTGRGPS +H+GH++PF TK+LQ+ F V L IQ+TDDEK ++K+
Sbjct: 64 LQDYESGKGFFLYTGRGPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKDK 122
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
L+ E+++ A +N DIIA GFD +TFIF D ++ Y+ + +AK + ++ +F
Sbjct: 123 LTFEDTKYWAYQNILDIIAVGFDPDRTFIFQDSEFT--KIYEMAIPIAKKINFSMAKAVF 180
Query: 196 GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRI 255
GFT + IG + +P +QA P+F F K RCLIP AIDQDPY+R+ RD A +
Sbjct: 181 GFTEQSKIGMIFYPAIQAAPTF-------FEKK---RCLIPAAIDQDPYWRLQRDFAESL 230
Query: 256 GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
GY+K A I S F P L G GKMSAS P +AIY+TD + + KI
Sbjct: 231 GYYKTAAIHSKFVPGLMGLEGKMSASKPETAIYLTDDPEEVGRKI 275
>sp|Q5JEP3|SYW_PYRKO Tryptophan--tRNA ligase OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=trpS PE=3 SV=1
Length = 384
Score = 234 bits (596), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 129/285 (45%), Positives = 178/285 (62%), Gaps = 16/285 (5%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
V+PW+V G +DY+KLI++FG L L+++ LT +F RR FF+HRD + +
Sbjct: 6 VTPWDVE--GVVDYNKLIEQFGTSPLTDELIEKTAELTKSELPLFFRRRFFFSHRDYDKV 63
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN- 135
L YE G F+LYTGRGPS +H+GH++PF TK+LQ+ F V L IQ+TDDEK ++K
Sbjct: 64 LADYESGRGFFLYTGRGPSG-PMHIGHIIPFFATKWLQENFDVNLYIQITDDEKFLFKEK 122
Query: 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF 195
LS E+++R A EN DIIA GFD KTFIF + ++ Y+ + +AK + ++ +F
Sbjct: 123 LSFEDTKRWAYENILDIIAVGFDPDKTFIFQNSEFT--KIYEMALPIAKKINFSMARAVF 180
Query: 196 GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRI 255
GF + IG + +P +QA P+F F K RCLIP AIDQDPY+R+ RD A +
Sbjct: 181 GFNEQSKIGMIFYPAIQAAPTF-------FEKK---RCLIPAAIDQDPYWRLQRDFAESL 230
Query: 256 GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
GY+K A I S F P L GKMSAS P +A+Y+TD + KI
Sbjct: 231 GYYKTAAIHSKFVPGLTSLEGKMSASKPETAVYLTDDPEEAGKKI 275
>sp|A3MX72|SYW_PYRCJ Tryptophan--tRNA ligase OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=trpS PE=3 SV=1
Length = 374
Score = 229 bits (584), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 130/290 (44%), Positives = 178/290 (61%), Gaps = 11/290 (3%)
Query: 12 EREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHR 71
+ E VV+PWEV G++DY KL+ +FG + L Q+ V +++ G H +RRG F+AHR
Sbjct: 2 DEEFVVTPWEVR--GRVDYQKLMQQFGARPLTQAEVSLLEKYAGEV-HPLIRRGFFYAHR 58
Query: 72 DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKC 131
DL+ IL + +G+ + LYTGRGPS +H+GH+VP++ K+L D F V + Q+TDDEK
Sbjct: 59 DLDAILKWHGEGKPWALYTGRGPSG-PVHIGHMVPWILLKWLSDKFGVEVYFQMTDDEKF 117
Query: 132 MWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNK 190
+ +EE+ + A ENA D+IA GF K + D + Y KVAK +T+N
Sbjct: 118 YDDPEMRLEEATKWAYENALDVIALGFTPDKLHLIIDTKDIK-PLYPIAAKVAKKLTWNT 176
Query: 191 VVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRD 250
V FGFT +IG + +P +Q +F P G+ LIPCAIDQDPYFR+ RD
Sbjct: 177 VKATFGFTDSTNIGLIFYPSLQIAVAF---LPTELHGRP-TPVLIPCAIDQDPYFRLARD 232
Query: 251 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
+A +GY KPA + S F AL GE+ KMSAS+PNSAIY D K I+ KI
Sbjct: 233 IAESLGYPKPATLYSKFIMALTGES-KMSASNPNSAIYTIDDEKTIRRKI 281
>sp|Q8ZTU5|SYW_PYRAE Tryptophan--tRNA ligase OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) GN=trpS
PE=3 SV=1
Length = 375
Score = 215 bits (548), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 121/292 (41%), Positives = 176/292 (60%), Gaps = 13/292 (4%)
Query: 12 EREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHR 71
E E VV+PWEV G++DY+KL+ FG + L + V +++ G H +RRG F+AHR
Sbjct: 2 EEEFVVTPWEVR--GRVDYEKLLKHFGAKPLTKDEVALLEKYAGEV-HPLIRRGFFYAHR 58
Query: 72 DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKC 131
D + I+ + +G + LYTGRGPS +H+GH+VP++ K+ D F + + Q+TDDEK
Sbjct: 59 DFDFIMKWHGEGRPWALYTGRGPSG-PVHIGHMVPWILLKWFSDKFGLEVYFQITDDEKF 117
Query: 132 MWK-NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNK 190
+ +EE+ A ENA D+IA GF + + D + Y V+VAK +T+N
Sbjct: 118 YDDPEMKLEEATNWAYENALDVIALGFSPERLHLIIDTKDIK-PLYPIAVRVAKKLTWNT 176
Query: 191 VVGIFGFTGEDHIGKVSFPPVQ-AVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTR 249
V FGFT +IG + +P +Q AV P+ ++ LIPCAIDQDPYFR+ R
Sbjct: 177 VKATFGFTDSTNIGLIFYPSLQIAVAFLPTEL-----RREATPVLIPCAIDQDPYFRLAR 231
Query: 250 DVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKII 301
D+A +GY KP+ + S F AL GE+ KMSAS+P+SAIY D K ++ K++
Sbjct: 232 DIADALGYPKPSTLYSKFIMALTGES-KMSASNPDSAIYTLDDEKTVRRKVM 282
>sp|A4WL99|SYW_PYRAR Tryptophan--tRNA ligase OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=trpS PE=3 SV=1
Length = 374
Score = 214 bits (546), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 124/288 (43%), Positives = 173/288 (60%), Gaps = 13/288 (4%)
Query: 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLND 75
VV+PWEV GK+DY+KL+ +FG + L V +++ G H ++RG F+AHRD +
Sbjct: 6 VVTPWEVR--GKVDYEKLLRQFGAKPLTAEEVALLEKYAGDV-HPLIKRGFFYAHRDFDF 62
Query: 76 ILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK- 134
IL + +G + LYTGRGPS +H+GH+VP++ K+ D F V + Q+TDDEK
Sbjct: 63 ILKWHGEGRPWALYTGRGPSG-PVHIGHMVPWILLKWFSDKFGVEVYFQMTDDEKFFDDP 121
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGI 194
+ +EE+ A ENA D+IA GF K + D + Y V+VAK +T+N V
Sbjct: 122 EMKLEEATGWAYENALDVIALGFGPDKLHLIVDTKDIA-PLYPIAVRVAKKLTWNTVKAT 180
Query: 195 FGFTGEDHIGKVSFPPVQ-AVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAP 253
FGFT +IG + +P +Q AV P+ K+ LIPCAIDQDPYFR+ RD+A
Sbjct: 181 FGFTDSSNIGLIFYPSLQIAVAFLPTEL-----KKEPTPVLIPCAIDQDPYFRLARDIAD 235
Query: 254 RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKII 301
+ Y KP + S F AL GE+ KMSAS+P+SAIY D K +K+KI+
Sbjct: 236 SLSYPKPTTLYSKFIMALTGES-KMSASNPDSAIYTMDDDKTVKHKIL 282
>sp|Q9HN66|SYW2_HALSA Tryptophan--tRNA ligase 2 OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=trpS2 PE=3 SV=1
Length = 380
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/307 (32%), Positives = 153/307 (49%), Gaps = 24/307 (7%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
V+P+ V S +DY+KL+ +FG L D+ R P H + RG+F+A RD++D
Sbjct: 8 VTPYAVESD-DLDYEKLLARFGADELTD---DQRARF---PDHPLVNRGLFYAGRDVDDF 60
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNL 136
L A E+ + TG GPS +HLGH + F F + LQD F + + L+DDEK +K+
Sbjct: 61 LTAGEQS----IVTGVGPSG-PMHLGHAMVFYFARRLQDEFGARVYVPLSDDEKYWFKDQ 115
Query: 137 SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFG 196
+ E+ R N +D++A GFD T I D Y A V + + ++G
Sbjct: 116 TPAETGDYLRANLRDLLAVGFDPELTRIVVDT-RDADVLYPLATAFAGDVRHATLQNVYG 174
Query: 197 FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG 256
D++G+ +P VQ P L G+ L+P A+DQDP+ R++RDVA +
Sbjct: 175 --EPDNVGQAFYPAVQTAHLL---LPQLVHGEHE--TLVPIAVDQDPHVRVSRDVAAKAR 227
Query: 257 Y--HKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQVCIFW 314
Y KP + F P+L G GKMS+S +I +TDS ++ K+ + +
Sbjct: 228 YPVGKPGALLMQFLPSLAG-PGKMSSS-AGVSIRLTDSPDTVREKVRTHAYTGGRASVEE 285
Query: 315 RTRKCGI 321
K G+
Sbjct: 286 HRAKGGV 292
>sp|Q8TYF7|SYW_METKA Tryptophan--tRNA ligase OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=trpS PE=3 SV=1
Length = 374
Score = 132 bits (331), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 146/290 (50%), Gaps = 25/290 (8%)
Query: 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLND 75
++ PW+V ++DY++L ++FG + +D+ + + + R R P L RG+ F HRD +
Sbjct: 1 MIDPWDVE---EVDYERLTEEFGIRPIDEKVRELLPR---RFP--LLDRGIVFGHRDYDS 52
Query: 76 ILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135
L Y G+ + +G PS +HLGH + Q V + + + D E +N
Sbjct: 53 FLKDYNDGKLVSVLSGMMPSGR-MHLGHKTVVDQLVFYQQEMDVKVYVPIADLEAHHARN 111
Query: 136 LSVEESQRLA-RENAKDIIACGFDVT----KTFIFSDFDYVGGAFYKNMVKVAKCVTYNK 190
+ ++ + R+A E + A G D+ + ++ S+ V + + +A +T+N
Sbjct: 112 MDLDRAHRIAVEEYVLNYAALGLDLDPDRCEIYLQSERKTV----QRMALLLAGRLTWNT 167
Query: 191 VVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRD 250
V +GFTGE ++G P VQA P G R L+P +DQDP+ R+TRD
Sbjct: 168 VKNTYGFTGETNMGHAFAPIVQAADIL---HPQEIEGPH--RVLVPVGVDQDPHLRLTRD 222
Query: 251 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
+A + KPA F L G GKMS+S PN+AI++TD + K K+
Sbjct: 223 IAEKEDLIKPASTYHRFMTGLTG--GKMSSSKPNTAIFLTDDPETAKEKV 270
>sp|Q58810|SYW_METJA Tryptophan--tRNA ligase OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=trpS PE=3 SV=1
Length = 370
Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 93/304 (30%), Positives = 148/304 (48%), Gaps = 29/304 (9%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
++PWE + IDY K +++FG + +VD + L + H F RR + HRD I
Sbjct: 6 LTPWETPAV--IDYKKTMEQFGVK----PIVDVLGDL--KEEHHFFRRNIILGHRDFERI 57
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQ---DAFKVPLVIQLTDDEKCMW 133
+DA + ++F + +G PS + +H GH + K+ Q D +P+ D + W
Sbjct: 58 VDAIKNNKEFAVVSGMMPSGK-MHFGHKMVVDLLKFYQKYTDNINIPIA-----DLEAYW 111
Query: 134 -KNLSVEESQRLA-RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKV-AKCVTYNK 190
+N+S E ++ LA E + IA G D K ++ Y K++ + +K +++
Sbjct: 112 ARNMSFETTKELALNEYITNYIALGLDPEKINVYLQSKYQK---VKDLALILSKRTNWSE 168
Query: 191 VVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRD 250
+ I+GF GE +IG V P VQ S + ++P IDQDP+ R+TRD
Sbjct: 169 MKAIYGFKGETNIGHVFAPIVQVADILHPQLDENLS-PEPKPVVVPVGIDQDPHIRLTRD 227
Query: 251 VAPRIGYHK---PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCAD 307
+A R K P+ F L G GKMS+S P +AI++TD K +K KI K
Sbjct: 228 IANRAKEFKFIPPSSTYHRFMTGLLG--GKMSSSKPETAIFLTDDEKTVKKKIFSAKTGG 285
Query: 308 KQVC 311
++
Sbjct: 286 RETL 289
>sp|O26352|SYW_METTH Tryptophan--tRNA ligase OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=trpS PE=3 SV=1
Length = 364
Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/313 (29%), Positives = 141/313 (45%), Gaps = 45/313 (14%)
Query: 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLND 75
++ PW S K++Y LI+ FG + + L D V P +RRG+ F HRD
Sbjct: 1 MIDPW---GSAKLEYQDLIENFGVRPFSEVL-DEVPE-----PSWLMRRGIIFGHRDYER 51
Query: 76 ILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQ--DAFKVPLVIQLTDDEKCMW 133
I+ A +KGE F + TG PS +H+GH M L+ D + I + D E
Sbjct: 52 IISAMKKGEDFAVVTGMMPSGR-MHIGHK---MIVDQLRWYDRMGAEIFIPIADMEAYSA 107
Query: 134 KNLSVEESQRLA-RENAKDIIACGFDVTK----------TFIFSDFDYVGGAFYKNMVKV 182
+ + E+S+R+A E IA G D+ K + D YV +
Sbjct: 108 RGVDFEDSRRIAIEEYIAGYIALGLDLEKDNIHVYLQSENLMVEDLAYV----------L 157
Query: 183 AKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQD 242
A V +N++ I+GFTG + + P +Q L + ++P DQD
Sbjct: 158 AGKVNFNELRAIYGFTGSTSMAHMYAPIIQVSDILHPQLDELGGPRP---VIVPVGPDQD 214
Query: 243 PYFRMTRDVAPRI----GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 298
P+ R+TRD+A R G+ P+ F L G GKMS++ P SAI+++D+ + +
Sbjct: 215 PHIRLTRDIAARFRDRYGFILPSSTYHRFMGGLTG--GKMSSNRPKSAIFLSDTPEEAEA 272
Query: 299 KIILLKCADKQVC 311
KI K ++
Sbjct: 273 KIRNAKTGGRETL 285
>sp|Q9Y924|SYW_AERPE Tryptophan--tRNA ligase OS=Aeropyrum pernix (strain ATCC 700893 /
DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=trpS PE=1
SV=2
Length = 372
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 86/285 (30%), Positives = 137/285 (48%), Gaps = 34/285 (11%)
Query: 29 DYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYL 88
DYD+L+ FG + + L + R G P +RRG+ F HRD + IL+A +GE+ +
Sbjct: 16 DYDRLLRTFGIRPFSEVLP--LLRKAGMEPSFLMRRGIIFGHRDFDKILEAKARGERVAV 73
Query: 89 YTGRGPSSEALHLGHLVPFMFTKYLQ-DAFKVPLVIQLTDDEKCMWKNLSVEESQRLA-R 146
TG PS + H GH + YLQ + FKV + + D E + + EE+ R+A
Sbjct: 74 LTGFMPSGK-FHFGHKLTVDQLIYLQKNGFKV--FVAIADAEAFAVRRIGREEAVRIAVE 130
Query: 147 ENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKV-AKCVTYNKVVGIFGFTGEDHIGK 205
E ++IA G D T + F G Y ++++ + VT ++ I+G
Sbjct: 131 EYIANMIALGLDPKDTEFY--FQTNRGTPYFRLIQLFSGKVTAAEMEAIYG--------- 179
Query: 206 VSFPPVQAVPSFPSSFPHL------FSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG--- 256
P + + S + L + G H+ ++P DQDP+ R+TRD+A R+
Sbjct: 180 -ELTPAKMMASLTQAADILHVQLDEYGGYRHV--VVPVGADQDPHLRLTRDLADRMAGVV 236
Query: 257 -YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
+PA P L G KMS+S P+S I++TD + +NK+
Sbjct: 237 ELERPASTYHKLQPGLDGR--KMSSSRPDSTIFLTDPPEVARNKL 279
>sp|A2BLD4|SYW_HYPBU Tryptophan--tRNA ligase OS=Hyperthermus butylicus (strain DSM 5456
/ JCM 9403) GN=trpS PE=3 SV=1
Length = 373
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 139/282 (49%), Gaps = 23/282 (8%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
+ PW +S+ +++Y+KL FG + Q L+ V++ G+P H +RRG+ F HRD I
Sbjct: 6 LDPW--ASAIRLEYEKLFRYFGIKPF-QPLLPEVEKAFGKP-HRLMRRGIIFGHRDYEKI 61
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGH-LVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135
L+AY GE+ L TG PS + H GH +V Y + F++ +VI D E +
Sbjct: 62 LEAYRSGERIALVTGFMPSGK-FHFGHKMVADQIIYYQKLGFEIFVVI--ADAEAYAVRR 118
Query: 136 LSVEESQRLA-RENAKDIIACGFDVTK-TFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVG 193
L + + E ++IA G + K T I+ +Y +Y+ + ++ VT ++
Sbjct: 119 LDRRKIIEIGLYEYVANLIALGLEKNKHTHIYFQTNY-ETPYYRLIQMFSRRVTLEEMSA 177
Query: 194 IFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAP 253
I+ G+ K+ QA + F G ++ ++P DQDP+ R+TRD+A
Sbjct: 178 IY---GDLEPSKIMAALTQAADILHPQLDY-FGGFKYV--VVPVGADQDPHIRLTRDIAA 231
Query: 254 R----IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 291
R +G +PA F L G KMS+S P I++TD
Sbjct: 232 RFENELGLRRPASTYHRFQTGLDG--NKMSSSRPEYTIFLTD 271
>sp|O28579|SYW_ARCFU Tryptophan--tRNA ligase OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=trpS PE=3 SV=1
Length = 420
Score = 97.8 bits (242), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 113/242 (46%), Gaps = 22/242 (9%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSL--VDRVQRLTGRPPHVFLRRGVFFAHRDLN 74
V+PWEV G IDY KLI++FG Q + L +D PH+ +RRG F HRD
Sbjct: 3 VTPWEVE--GVIDYSKLIEEFGMQPFSEVLPEIDN--------PHILMRRGAIFGHRDYW 52
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK 134
I++A +K E + + +G PS H GH + + Q A V + D E +
Sbjct: 53 RIIEAMQKKEPWAVMSGFMPSG-LPHFGHKMTMDEIVWHQSAGGKAFV-AIADMEAHSVR 110
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMV-KVAKCVTYNKVVG 193
LS E+++ L K IIA G F + K++ +++ V ++++
Sbjct: 111 GLSWEKTRELGMLYIKSIIALGLREDAVIYFQS----KSSHVKDLAFELSAEVNFSELRA 166
Query: 194 IFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAP 253
I+GF + + K+ +QA P L ++P DQDP+ R+TRD+A
Sbjct: 167 IYGFNSDTSLAKMFVTAIQAADIL---HPQLSDFGGPKPVVVPVGADQDPHMRLTRDLAA 223
Query: 254 RI 255
RI
Sbjct: 224 RI 225
>sp|Q8PWV5|SYW_METMA Tryptophan--tRNA ligase OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=trpS PE=3 SV=2
Length = 491
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 103/241 (42%), Gaps = 19/241 (7%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
+ PW SSS DY KL ++FG + L + PH ++RR + F HRD I
Sbjct: 5 LDPW--SSSNITDYSKLFEEFGISPFENILPEIPS------PHKYMRRRIIFGHRDYEQI 56
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNL 136
+A G F + G PS + +HLGH + + Q+ + + D E +
Sbjct: 57 AEAMRTGAPFSVMDGFMPSGK-VHLGHKMVMDQIVWHQEK-GASAFVGIADREAFSVRGF 114
Query: 137 SVEESQRLA-RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMV-KVAKCVTYNKVVGI 194
S ++ + + E +IA GF F G K++ ++ V ++++ I
Sbjct: 115 SWQKCREIGVEEYILSLIALGFKPEGLIYFQS----GCGSVKDLAFELGAKVNFSELSAI 170
Query: 195 FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR 254
+GF+GE + + QA K ++P DQDP+ R+TR +A +
Sbjct: 171 YGFSGETSLSHMLSVATQAADILQPQLEEFGGSKP---VVVPVGPDQDPHLRLTRGLAGK 227
Query: 255 I 255
+
Sbjct: 228 M 228
>sp|Q8TUA1|SYW_METAC Tryptophan--tRNA ligase OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=trpS PE=3 SV=1
Length = 437
Score = 70.9 bits (172), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 105/241 (43%), Gaps = 19/241 (7%)
Query: 17 VSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDI 76
+ PW SSS DY KL ++FG + L + PH+++RR V F HRD I
Sbjct: 5 LDPW--SSSDITDYSKLFEEFGISPFENVLPEIPS------PHMYMRRKVIFGHRDYEQI 56
Query: 77 LDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNL 136
+A G F + G PS + +HLGH + + Q+ + + D E +
Sbjct: 57 AEAMRTGAPFSVMDGFMPSGK-VHLGHKMVMDQIVWHQE-MGASAFVGIADREAFSVRGF 114
Query: 137 SVEESQRLA-RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMV-KVAKCVTYNKVVGI 194
S ++ + + E +IA GF F G K++ ++ V ++++ I
Sbjct: 115 SWQKCREIGVEEYILSLIALGFKPDGLIYFQS----GCGSVKDLAFELGAKVNFSELSAI 170
Query: 195 FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR 254
+GF+GE + + QA P L ++P DQDP+ R+TR +A +
Sbjct: 171 YGFSGETSLSHMLSVATQAADILQ---PQLEEFGGPKPVVVPVGPDQDPHLRLTRGLAGK 227
Query: 255 I 255
+
Sbjct: 228 M 228
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
Query: 246 RMTRDVAPRIGYHK---PALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
++ R+V G + PA F LQG GKMS+S P S I +TDS K K+
Sbjct: 289 KLVREVTVEFGGYAFIPPASTYHRFMSGLQG--GKMSSSIPESQIALTDSPKEGAKKV 344
>sp|Q9HN83|SYW1_HALSA Tryptophan--tRNA ligase 1 OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=trpS1 PE=3 SV=1
Length = 513
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 99/249 (39%), Gaps = 28/249 (11%)
Query: 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRP-PHVFLRRGVFFAHRDLN 74
+ PW S+ DY L D+FG + + L G P PH +RR + F HRD
Sbjct: 16 ALDPW--GSATISDYRALFDEFGIEAFEDVL-------DGVPTPHSLMRRAIIFGHRDYR 66
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQ----DAFKVPLVIQLTDDEK 130
+ A E F +G P+ + H+GH + F + Q DA+ + + D E
Sbjct: 67 RVAAAMRNDEPFAALSGFMPTGDP-HIGHKMVFDELIWHQQQGGDAYAL-----IADLEA 120
Query: 131 CMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNK 190
+ L E A + ++A GFD + ++ ++ ++
Sbjct: 121 HSARGLDWAEIDEHAEDYLLSLLALGFDADEGELYR--QSTNRELQDLAFELGIEANTSE 178
Query: 191 VVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRD 250
I+GF G+ + + Q +P L + K +IP DQDP+ R RD
Sbjct: 179 FEAIYGFGGDTDVSHMQSVVTQMADIL---YPQLDAPK---PTVIPVGPDQDPHVRFARD 232
Query: 251 VAPRIGYHK 259
+A R Y K
Sbjct: 233 LAERTRYFK 241
>sp|Q978Y8|SYW_THEVO Tryptophan--tRNA ligase OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1) GN=trpS
PE=3 SV=1
Length = 426
Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 63/241 (26%), Positives = 105/241 (43%), Gaps = 23/241 (9%)
Query: 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLND 75
+++PW SSS DY++L +FG DQS D + H RR V R
Sbjct: 1 MINPW--SSSDFFDYERLKKEFGIS--DQS--DNID-------HFLFRRKVILGQRGFEY 47
Query: 76 ILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135
I A + KF + TG PS E +HLG+ Y Q + I + D E +
Sbjct: 48 IKYAIDNKIKFNVMTGLMPSGE-MHLGNKSAIDQVIYFQ-KLGGSVSIAVADLESYSTRG 105
Query: 136 LSVEESQRLAREN-AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGI 194
+ +++++ +A E + IA G + + S V Y + N++ +
Sbjct: 106 IPLDKAREIAIEKYILNYIAMGLQPCEIYFQSKNKDVQFLSYI----LGNWTNMNELKAL 161
Query: 195 FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR 254
+GFT + I ++ P +QA + + + G ++P DQDP+ R+ RD+A R
Sbjct: 162 YGFTDSNDILHINAPLIQAADVLHTQLNN-YGGP--APTVVPVGFDQDPHIRLMRDLAKR 218
Query: 255 I 255
+
Sbjct: 219 M 219
>sp|O29482|SYY_ARCFU Tyrosine--tRNA ligase OS=Archaeoglobus fulgidus (strain ATCC 49558
/ VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=tyrS
PE=1 SV=1
Length = 323
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 101/225 (44%), Gaps = 21/225 (9%)
Query: 81 EKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEE 140
E EK Y G PS E +HLGH++ LQ+A +++ L D + + + EE
Sbjct: 28 ETKEKPRAYVGYEPSGE-IHLGHMMTVQKLMDLQEA-GFEIIVLLADIHAYLNEKGTFEE 85
Query: 141 SQRLARENAKDIIACGFDVTKT-FIFSDFDYVGGAFYKNMVKVAKCVTYNKV---VGIFG 196
+A N K IA G D ++ F+ + + +++K+A+ T N+ +
Sbjct: 86 IAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVS 145
Query: 197 FTGED-HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRI 255
ED + ++ +P +QA+ HL G D L IDQ + R+ PR+
Sbjct: 146 RRKEDPMVSQMIYPLMQAL-----DIAHL--GVD----LAVGGIDQRKIHMLARENLPRL 194
Query: 256 GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
GY P + + L G+ KMS+S N I V D + ++ KI
Sbjct: 195 GYSSPVCLHTPILVGLDGQ--KMSSSKGNY-ISVRDPPEEVERKI 236
>sp|Q9HIW5|SYW_THEAC Tryptophan--tRNA ligase OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=trpS PE=3 SV=1
Length = 426
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 103/241 (42%), Gaps = 23/241 (9%)
Query: 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLND 75
+++PW SSS DY++L +FG ++ H RR + R ++
Sbjct: 1 MINPW--SSSDFFDYERLKREFGIGDMNVPF-----------DHFLFRRHLILGQRSIDY 47
Query: 76 ILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135
I A + KF + TG PS E +HLG+ + Q + I + D E +
Sbjct: 48 IDYALKHHMKFNVMTGLMPSGE-MHLGNKSAIDQVIFFQ-KLGGRVSIAVADLESYSTRG 105
Query: 136 LSVEESQRLAREN-AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGI 194
+S+E ++ +A E + IA G + + + S V Y + +++ +
Sbjct: 106 ISLERAREVAIEKYILNYIAMGLEPCEIYFQSRNSDVQFLAYM----LGNRTNMSELRSL 161
Query: 195 FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR 254
+GFT + ++ P +QA + + G ++P DQDP+ R+ RD+A R
Sbjct: 162 YGFTDTHDLLHINAPLIQAADVLHTQMKK-YGGP--APTVVPVGFDQDPHLRLMRDLAKR 218
Query: 255 I 255
+
Sbjct: 219 M 219
>sp|Q8TSI1|SYY_METAC Tyrosine--tRNA ligase OS=Methanosarcina acetivorans (strain ATCC
35395 / DSM 2834 / JCM 12185 / C2A) GN=tyrS PE=3 SV=1
Length = 317
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 99/217 (45%), Gaps = 23/217 (10%)
Query: 89 YTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEKCMWKNLSVEESQRLARE 147
Y G PS + +H+GH++ LQ A FK+ ++ L D + K ++EE +++A
Sbjct: 33 YVGYEPSGK-IHMGHVLTVNKLIDLQKAGFKITVL--LADVHAYLNKKGTLEEVRKIADY 89
Query: 148 NAKDIIACGFDVTKT-FIF-SDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGK 205
N + IA G D +T F++ SDF +G + N++K+++ VT N+ D +G+
Sbjct: 90 NRRCFIALGLDEEQTDFVYGSDFQ-LGAEYMLNVLKLSRAVTLNR-----AKRSMDEVGR 143
Query: 206 VSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA---IDQDPYFRMTRDVAPRIGYHKPAL 262
P + +P L D + A IDQ + R+ +G+ P
Sbjct: 144 AMDDPTVSQMVYP-----LMQAIDIALLEVDVAVGGIDQRKIHMLARENLKSLGFETPIC 198
Query: 263 IESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 299
I + P L G G AS ++ I + D+ + I K
Sbjct: 199 IHT---PILLGLDGTKMASSKDNFISIDDTGEDIYRK 232
>sp|Q8PVK0|SYY_METMA Tyrosine--tRNA ligase OS=Methanosarcina mazei (strain ATCC BAA-159
/ DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88) GN=tyrS
PE=3 SV=1
Length = 317
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 99/217 (45%), Gaps = 23/217 (10%)
Query: 89 YTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEKCMWKNLSVEESQRLARE 147
Y G PS + +H+GH++ LQ A FK+ ++ L D + + ++EE +++A
Sbjct: 33 YVGYEPSGK-IHMGHVLTVNKLIDLQKAGFKITVL--LADVHAYLNRKGTLEEVRKIADY 89
Query: 148 NAKDIIACGFDVTKT-FIF-SDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGK 205
N + IA G D +T F++ SDF +G + N++K+++ VT N+ D +G+
Sbjct: 90 NRRCFIALGLDEEQTDFVYGSDFQ-LGAEYMLNVLKLSRAVTLNR-----AKRSMDEVGR 143
Query: 206 VSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA---IDQDPYFRMTRDVAPRIGYHKPAL 262
P + +P L D + A IDQ + R+ +G+ P
Sbjct: 144 AMDDPTVSQMVYP-----LMQAIDIALLEVDVAVGGIDQRKIHMLARENLKSLGFETPIC 198
Query: 263 IESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 299
I + P L G G AS ++ I V D+ + I K
Sbjct: 199 IHT---PILLGLDGTKMASSKDNFISVDDTEEEIYRK 232
>sp|Q46BQ5|SYY_METBF Tyrosine--tRNA ligase OS=Methanosarcina barkeri (strain Fusaro /
DSM 804) GN=tyrS PE=3 SV=1
Length = 317
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 92/216 (42%), Gaps = 19/216 (8%)
Query: 89 YTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLAREN 148
Y G PS + +H+GH++ LQ A + + L D + + ++EE +++A N
Sbjct: 33 YVGYEPSGK-IHMGHVLTVNKLIDLQKA-GFEITVLLADVHAYLNRKGTLEEVRKIADYN 90
Query: 149 AKDIIACGFDVTKTFIFSDFDYVGGAFYK-NMVKVAKCVTYNKVVGIFGFTGEDHIGKVS 207
+ IA G D KT DY GA Y N++K+++ VT N+ D +G+
Sbjct: 91 KRCFIALGLDKEKTNFVYGSDYQLGAEYMLNVLKLSRSVTLNR-----ARRSMDEVGRAM 145
Query: 208 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA---IDQDPYFRMTRDVAPRIGYHKPALIE 264
P + +P L D + A IDQ + R+ +G+ P I
Sbjct: 146 DDPTVSQMVYP-----LMQAIDIAMLGVDIAVGGIDQRKIHMLARENLKNLGFETPICIH 200
Query: 265 SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
+ P L G G AS + I V D+ + I K+
Sbjct: 201 T---PILLGLDGTKMASSKENFISVDDTEEEIYRKL 233
>sp|A6URQ1|SYY_METVS Tyrosine--tRNA ligase OS=Methanococcus vannielii (strain SB / ATCC
35089 / DSM 1224) GN=tyrS PE=3 SV=1
Length = 319
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 69/252 (27%), Positives = 111/252 (44%), Gaps = 40/252 (15%)
Query: 71 RDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDE 129
++N++L ++GEK Y G PS + +HLGH + LQ A FK+ +I L D
Sbjct: 26 EEMNELLK--KEGEKI-AYIGFEPSGK-IHLGHYLQIKKMIDLQKAGFKI--IILLADLH 79
Query: 130 KCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKN------MVKVA 183
+ + ++EE + L EN K + G + +D+ Y G F N + K+A
Sbjct: 80 AYLNQKGTMEEIRALGEENKKAFESMG-------LIADYVY-GSEFQLNEEYTIDVYKLA 131
Query: 184 KCVTYNKV---VGIFGFTGED-HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA- 238
T N+ + + E+ + V +P +Q + HL +
Sbjct: 132 LATTLNRAKRSMEVIAREDENPKVASVVYPLMQV------------NDIKHLNVDVAVGG 179
Query: 239 IDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 298
++Q ++R++ P +GY P I + L GE GKMS+S N I V D IKN
Sbjct: 180 MEQRKIHMLSREILPNMGYKAPICIHNPILTGLDGE-GKMSSSKGN-LIAVDDDEVTIKN 237
Query: 299 KIILLKCADKQV 310
K+ C K+V
Sbjct: 238 KLKNAFCPMKEV 249
>sp|Q2NHE1|SYY_METST Tyrosine--tRNA ligase OS=Methanosphaera stadtmanae (strain DSM
3091) GN=tyrS PE=3 SV=1
Length = 318
Score = 53.9 bits (128), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 90/218 (41%), Gaps = 25/218 (11%)
Query: 89 YTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEKCMWKNLSVEESQRLARE 147
Y G PS + +HLGH + K LQDA FK+ + I + + +++E +A+
Sbjct: 35 YVGFEPSGK-VHLGHALTIKKMKTLQDAGFKITIFI--ANLHAYLNNKGTLDELNEVAKY 91
Query: 148 NAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT--GEDH-IG 204
N K A G FI D + + + K AK T + E H +
Sbjct: 92 NIKCFKALGLSEDTNFILGS-DRMTPEYITEVFKAAKLTTIQRAQRSMALVSRNETHDVA 150
Query: 205 KVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIE 264
+ +P +QA+ G ++Q + R++ PR+GY P I
Sbjct: 151 QTLYPIMQALDIHDLDADIAVGG-----------MEQRKIHMLAREILPRLGYRPPVCI- 198
Query: 265 SSFFPALQGETG--KMSASDPNSAIYVTDSAKAIKNKI 300
P + G G KMS+S N I + D+ K IKNKI
Sbjct: 199 --HIPLIHGTDGSDKMSSSKGN-FIAIDDTPKEIKNKI 233
>sp|Q6L2J1|SYY_PICTO Tyrosine--tRNA ligase OS=Picrophilus torridus (strain ATCC 700027 /
DSM 9790 / JCM 10055 / NBRC 100828) GN=tyrS PE=3 SV=1
Length = 329
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 73/169 (43%), Gaps = 22/169 (13%)
Query: 153 IACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKV---VGIFGFTGED---HIGKV 206
+A G + F+++ ++ ++KVAK + ++ + I G + ED K
Sbjct: 96 LAAGLNSNVKFVWASELVEKSDYWSLLLKVAKNASLLRIRRSLPIMGRSEEDADRDFSKY 155
Query: 207 SFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESS 266
+P +Q F G +DQ + RD+A R+ KP + +
Sbjct: 156 IYPLMQVTDIFYLDVDFALGG-----------MDQRHAHMLARDIAERMNIKKPVSVHTP 204
Query: 267 FFPALQGET-----GKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQV 310
+L+G KMS S+P+SAI++TDS IK KI C K+V
Sbjct: 205 LLSSLKGSGRMDSFKKMSKSEPDSAIFMTDSNDDIKRKIKNAYCPMKEV 253
>sp|Q8TXZ2|SYY_METKA Tyrosine--tRNA ligase OS=Methanopyrus kandleri (strain AV19 / DSM
6324 / JCM 9639 / NBRC 100938) GN=tyrS PE=3 SV=1
Length = 324
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 24/228 (10%)
Query: 89 YTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEKCMWKNLSVEESQRLARE 147
Y G PS + +HLGH + LQ+A F V +I L D + + ++EE + LA
Sbjct: 36 YVGFEPSGK-VHLGHKLVIDKMIDLQEAGFHV--IILLADLHAYLNEKGTLEEVRELADY 92
Query: 148 NAKDIIACGFDVTKT-FIFSDFDYVGGAFYKNMVKVAKCVTYNKV---VGIFGFTGEDH- 202
N + +A G D KT F+ + + ++ ++A+ T + + + + E+
Sbjct: 93 NRRCFLAMGLDPNKTEFVLGSEFQLDEDYALDVYRMARHTTMRRARRSMDMIARSEENPP 152
Query: 203 IGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDPYFRMTRDVAPRIGYHKPA 261
+ +V +P +QA+ HL L ++Q + RDV P++GY P
Sbjct: 153 VSQVVYPLMQALDIV------------HLNVDLAVGGLEQRKIHMLARDVLPKLGYDSPT 200
Query: 262 LIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQ 309
+ + L G+ KMS+S N+ I V D + I+ K+ C ++
Sbjct: 201 CLHTPIIHGLDGDE-KMSSSK-NNFIAVDDEPEVIREKLRKAYCPARE 246
>sp|O27795|SYY_METTH Tyrosine--tRNA ligase OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=tyrS PE=3 SV=1
Length = 319
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 101/235 (42%), Gaps = 27/235 (11%)
Query: 74 NDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEKCM 132
+++D +K E +YTG PS +HLGH + + LQDA F+V ++ L D +
Sbjct: 19 EELMDVLKKDEPV-VYTGYEPSGR-IHLGHALTVRKLRELQDAGFRVKIL--LADYHAYL 74
Query: 133 WKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTY---- 188
S+E + LA N K +A G +T + Y ++V +T
Sbjct: 75 NGKGSMERIRELADYNQKCFLALGLSPERTEFILGSSFQTEPEYTDLVYRLALITTLLRA 134
Query: 189 NKVVGIFGFTGEDH-IGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRM 247
+ + DH + +V +P +Q + ++ G D + ++Q +
Sbjct: 135 KRSMAQITRESRDHKVAEVIYPLMQVIDM-------VYLGVD----VALGGMEQRKIHML 183
Query: 248 TRDVAPRIGYHKPALIESSFFPALQGETG--KMSASDPNSAIYVTDSAKAIKNKI 300
R+ PR+G+ P I + P L G G KMS+S N I V DS I+ K+
Sbjct: 184 ARENLPRLGFDAPVCIHT---PLLHGTDGSEKMSSSKGN-FIAVDDSPDEIREKV 234
>sp|Q6M0K7|SYY_METMP Tyrosine--tRNA ligase OS=Methanococcus maripaludis (strain S2 / LL)
GN=tyrS PE=3 SV=1
Length = 319
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 23/235 (9%)
Query: 82 KGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEKCMWKNLSVEE 140
K E+ Y G PS +H+GH + LQ A FK+ VI L D + + +++E
Sbjct: 33 KKEEKIAYIGFEPSGR-IHMGHYLQIRKMIDLQKAGFKI--VILLADLHAYLNQKGTMDE 89
Query: 141 SQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKV---VGIFGF 197
+ L EN K A G +++ + + ++ K+A T N+ + +
Sbjct: 90 VRALGEENRKVFEAMGL--VADYVYGSEFQLKDEYTIDVYKLALSTTLNRARRSMEVIAR 147
Query: 198 TGED-HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG 256
E+ + V +P +Q + HL + + ++Q ++R++ P +G
Sbjct: 148 EDENPKVASVVYPLMQV-----NDIKHLNAD------VAVGGMEQRKIHMLSREILPSMG 196
Query: 257 YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQVC 311
Y P I + L GE GKMS+S N I V D IK K+ C K+V
Sbjct: 197 YKAPVCIHNPVLTGLDGE-GKMSSSKGN-FIAVDDDEATIKKKMKNAFCPMKEVS 249
>sp|P95982|SYY_SULSO Tyrosine--tRNA ligase OS=Sulfolobus solfataricus (strain ATCC 35092
/ DSM 1617 / JCM 11322 / P2) GN=tyrS PE=3 SV=1
Length = 366
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 103/260 (39%), Gaps = 42/260 (16%)
Query: 73 LNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCM 132
++++ E EK Y G PS H+G L+ +T+ ++D + + + L
Sbjct: 25 IDELRKKLESDEKLKGYIGFEPSG-LFHIGWLI---WTQKVKDLVEAGINMTLLRAAWHA 80
Query: 133 WKNLSVEESQ---RLARENAKDIIAC-GFDVTKTFIFSDFDYVGGA-FYKNMVKVAKCVT 187
W N + ++A + A ++I G DV K I D V ++ ++KVAK +
Sbjct: 81 WINDKLGGDMNLIKMAADYAVEVIKNYGVDVGKLNIVDADDIVKEKDYWALVIKVAKNAS 140
Query: 188 YNKV---VGIFGFTGED---HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 241
++ + I G E+ K+ +P +Q F G D +
Sbjct: 141 LARIKRALTIMGRRAEEAEIDASKLIYPAMQVSDIFYLDLDIALGGTDQRKA-------- 192
Query: 242 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETG----------------KMSASDPNS 285
+ RDVA ++G K I + LQG KMS S P S
Sbjct: 193 ---HMLARDVAEKMGKKKIVSIHTPLLVGLQGGQRMNITEGMEEDDIQAEIKMSKSKPES 249
Query: 286 AIYVTDSAKAIKNKIILLKC 305
AI+V DS + ++ KI+ C
Sbjct: 250 AIFVNDSREDVERKIMGAYC 269
>sp|A3CYG9|SYY_METMJ Tyrosine--tRNA ligase OS=Methanoculleus marisnigri (strain ATCC
35101 / DSM 1498 / JR1) GN=tyrS PE=3 SV=1
Length = 315
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 90/218 (41%), Gaps = 23/218 (10%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTDDEKCMWKNLSVEESQRLAR 146
+YTG PS E +HLGH+V LQ A F+V ++I D + + ++EE + A
Sbjct: 31 VYTGYEPSGE-IHLGHMVTVNKLMDLQQAGFEVTVLI--ADLHAFLNRKGTMEEIRETAE 87
Query: 147 ENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDH---- 202
N + G + SD + + ++++++ +T N+ G
Sbjct: 88 YNRRCFEGLGLRGANYVLGSDVQ-LTPEYELAVLELSQAITLNRAKRSMDEVGRQMDNPT 146
Query: 203 IGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPAL 262
+ ++ +P +Q V G IDQ + R+ P IGY P
Sbjct: 147 VSQMVYPIMQMVDIATLGVDAAVGG-----------IDQRKIHMLAREHLPSIGYPAPVC 195
Query: 263 IESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
I + P + G GK +S + I V DS + IK K+
Sbjct: 196 IHT---PIINGLDGKKMSSSAGNVISVADSEEDIKKKM 230
>sp|C3N8R2|SYY_SULIY Tyrosine--tRNA ligase OS=Sulfolobus islandicus (strain Y.G.57.14 /
Yellowstone #1) GN=tyrS PE=3 SV=1
Length = 361
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 101/260 (38%), Gaps = 42/260 (16%)
Query: 73 LNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCM 132
++++ E EK Y G PS H+G L+ +T+ ++D + + + L
Sbjct: 20 IDELRKKLESEEKLKGYIGFEPSG-LFHIGWLI---WTQKVKDLVEAGVNMTLLRATWHA 75
Query: 133 WKNLSVEESQRLARENAKDIIAC----GFDVTKTFIFSDFDYVGGA-FYKNMVKVAKCVT 187
W N + L + A + G D TK I D V ++ ++KVAK +
Sbjct: 76 WINDKLGGDLSLIKMAADYTVEVIKNYGVDTTKLNIVDADDMVKEKDYWALVIKVAKNAS 135
Query: 188 YNKV---VGIFGFTGED---HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 241
++ + I G E+ K+ +P +Q F G D + +
Sbjct: 136 LARIKRALTIMGRRAEEAEIDASKLIYPAMQVSDIFYLDLDIALGGTDQRKAHM------ 189
Query: 242 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETG----------------KMSASDPNS 285
+ RDVA ++G K I + LQG KMS S P S
Sbjct: 190 -----LARDVAEKMGKKKIVSIHTPLLVGLQGGQRMSITEGMEEDDIQAEIKMSKSKPES 244
Query: 286 AIYVTDSAKAIKNKIILLKC 305
AI+V+DS + ++ KI+ C
Sbjct: 245 AIFVSDSREDVERKIMGAYC 264
>sp|C3MJP1|SYY_SULIL Tyrosine--tRNA ligase OS=Sulfolobus islandicus (strain L.S.2.15 /
Lassen #1) GN=tyrS PE=3 SV=1
Length = 361
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 101/260 (38%), Gaps = 42/260 (16%)
Query: 73 LNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCM 132
++++ E EK Y G PS H+G L+ +T+ ++D + + + L
Sbjct: 20 IDELRKKLESEEKLKGYIGFEPSG-LFHIGWLI---WTQKVKDLVEAGVNMTLLRATWHA 75
Query: 133 WKNLSVEESQRLARENAKDIIAC----GFDVTKTFIFSDFDYVGGA-FYKNMVKVAKCVT 187
W N + L + A + G D TK I D V ++ ++KVAK +
Sbjct: 76 WINDKLGGDLSLIKMAADYTVEVIKNYGVDTTKLNIVDADDMVKEKDYWALVIKVAKNAS 135
Query: 188 YNKV---VGIFGFTGED---HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 241
++ + I G E+ K+ +P +Q F G D + +
Sbjct: 136 LARIKRALTIMGRRAEEAEIDASKLIYPAMQVSDIFYLDLDIALGGTDQRKAHM------ 189
Query: 242 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETG----------------KMSASDPNS 285
+ RDVA ++G K I + LQG KMS S P S
Sbjct: 190 -----LARDVAEKMGKKKIVSIHTPLLVGLQGGQRMSITEGMEEDDIQAEIKMSKSKPES 244
Query: 286 AIYVTDSAKAIKNKIILLKC 305
AI+V+DS + ++ KI+ C
Sbjct: 245 AIFVSDSREDVERKIMGAYC 264
>sp|C3N048|SYY_SULIA Tyrosine--tRNA ligase OS=Sulfolobus islandicus (strain M.16.27)
GN=tyrS PE=3 SV=1
Length = 361
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 101/260 (38%), Gaps = 42/260 (16%)
Query: 73 LNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCM 132
++++ E EK Y G PS H+G L+ +T+ ++D + + + L
Sbjct: 20 IDELRKKLESEEKLKGYIGFEPSG-LFHIGWLI---WTQKVKDLVEAGVNMTLLRATWHA 75
Query: 133 WKNLSVEESQRLARENAKDIIAC----GFDVTKTFIFSDFDYVGGA-FYKNMVKVAKCVT 187
W N + L + A + G D TK I D V ++ ++KVAK +
Sbjct: 76 WINDKLGGDLSLIKMAADYTVEVIKNYGVDTTKLNIVDADDMVKEKDYWALVIKVAKNAS 135
Query: 188 YNKV---VGIFGFTGED---HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 241
++ + I G E+ K+ +P +Q F G D + +
Sbjct: 136 LARIKRALTIMGRRAEEAEIDASKLIYPAMQVSDIFYLDLDIALGGTDQRKAHM------ 189
Query: 242 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETG----------------KMSASDPNS 285
+ RDVA ++G K I + LQG KMS S P S
Sbjct: 190 -----LARDVAEKMGKKKIVSIHTPLLVGLQGGQRMSITEGMEEDDIQAEIKMSKSKPES 244
Query: 286 AIYVTDSAKAIKNKIILLKC 305
AI+V+DS + ++ KI+ C
Sbjct: 245 AIFVSDSREDVERKIMGAYC 264
>sp|C3NMQ6|SYY_SULIN Tyrosine--tRNA ligase OS=Sulfolobus islandicus (strain Y.N.15.51 /
Yellowstone #2) GN=tyrS PE=3 SV=1
Length = 361
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/260 (23%), Positives = 101/260 (38%), Gaps = 42/260 (16%)
Query: 73 LNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCM 132
++++ E EK Y G PS H+G L+ +T+ ++D + + + L
Sbjct: 20 IDELRKKIESEEKLKGYIGFEPSG-LFHIGWLI---WTQKVKDLVEAGVNMTLLRATWHA 75
Query: 133 WKNLSVEESQRLARENAKDIIAC----GFDVTKTFIFSDFDYVGGA-FYKNMVKVAKCVT 187
W N + L + A + G D TK I D V ++ ++KVAK +
Sbjct: 76 WINDKLGGDLSLIKMAADYTVEVIKNYGVDTTKLNIVDADDMVKEKDYWALVIKVAKNAS 135
Query: 188 YNKV---VGIFGFTGED---HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 241
++ + I G E+ K+ +P +Q F G D + +
Sbjct: 136 LARIKRALTIMGRRAEEAEIDASKLIYPAMQVSDIFYLDLDIALGGTDQRKAHM------ 189
Query: 242 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETG----------------KMSASDPNS 285
+ RDVA ++G K I + LQG KMS S P S
Sbjct: 190 -----LARDVAEKMGKKKIVSIHTPLLVGLQGGQRMSITEGMEEDDIQAEIKMSKSKPES 244
Query: 286 AIYVTDSAKAIKNKIILLKC 305
AI+V+DS + ++ KI+ C
Sbjct: 245 AIFVSDSREDVERKIMGAYC 264
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 124,758,901
Number of Sequences: 539616
Number of extensions: 5384140
Number of successful extensions: 14977
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 111
Number of HSP's that attempted gapping in prelim test: 14543
Number of HSP's gapped (non-prelim): 416
length of query: 322
length of database: 191,569,459
effective HSP length: 117
effective length of query: 205
effective length of database: 128,434,387
effective search space: 26329049335
effective search space used: 26329049335
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)