Query 020745
Match_columns 322
No_of_seqs 237 out of 1529
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:48:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020745.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020745hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2145 Cytoplasmic tryptophan 100.0 8E-101 2E-105 703.6 19.4 313 9-321 7-325 (397)
2 PLN02486 aminoacyl-tRNA ligase 100.0 1.9E-91 4.2E-96 680.8 27.9 307 15-321 1-312 (383)
3 PRK12285 tryptophanyl-tRNA syn 100.0 1.2E-80 2.7E-85 603.5 25.1 290 12-321 1-297 (368)
4 COG0180 TrpS Tryptophanyl-tRNA 100.0 3.6E-55 7.7E-60 413.8 19.6 224 83-322 3-243 (314)
5 PRK08560 tyrosyl-tRNA syntheta 100.0 1.3E-54 2.9E-59 417.0 21.0 235 60-308 6-245 (329)
6 cd00806 TrpRS_core catalytic c 100.0 5.1E-54 1.1E-58 404.6 19.8 220 87-322 1-236 (280)
7 TIGR00233 trpS tryptophanyl-tR 100.0 3.2E-52 6.9E-57 400.1 20.1 222 84-321 1-236 (328)
8 PRK13354 tyrosyl-tRNA syntheta 100.0 5.8E-50 1.3E-54 394.2 21.7 230 60-302 8-257 (410)
9 PTZ00126 tyrosyl-tRNA syntheta 100.0 1.7E-49 3.8E-54 387.2 22.7 236 60-309 42-289 (383)
10 PRK12282 tryptophanyl-tRNA syn 100.0 5.3E-50 1.1E-54 385.2 18.5 219 86-322 3-239 (333)
11 cd00805 TyrRS_core catalytic c 100.0 6.8E-50 1.5E-54 374.7 17.3 206 87-307 2-225 (269)
12 PRK00927 tryptophanyl-tRNA syn 100.0 1.5E-49 3.2E-54 382.6 18.4 217 87-322 3-242 (333)
13 PRK05912 tyrosyl-tRNA syntheta 100.0 5.2E-49 1.1E-53 387.6 21.9 230 59-302 8-259 (408)
14 PLN02886 aminoacyl-tRNA ligase 100.0 4.2E-49 9.1E-54 383.1 19.9 219 86-322 47-298 (389)
15 PRK12556 tryptophanyl-tRNA syn 100.0 8.9E-49 1.9E-53 376.4 19.1 218 86-322 4-243 (332)
16 PF00579 tRNA-synt_1b: tRNA sy 100.0 4.4E-49 9.5E-54 372.7 13.3 214 82-309 2-230 (292)
17 cd00395 Tyr_Trp_RS_core cataly 100.0 1.5E-48 3.3E-53 366.2 16.7 206 87-304 1-227 (273)
18 PRK12283 tryptophanyl-tRNA syn 100.0 1.7E-46 3.8E-51 364.6 19.8 219 87-322 4-307 (398)
19 PTZ00348 tyrosyl-tRNA syntheta 100.0 6.1E-46 1.3E-50 382.1 23.1 235 60-308 8-253 (682)
20 TIGR00234 tyrS tyrosyl-tRNA sy 100.0 4.8E-46 1E-50 363.3 18.8 233 59-309 6-263 (377)
21 PRK12284 tryptophanyl-tRNA syn 100.0 2.1E-45 4.5E-50 359.8 19.6 219 85-322 2-243 (431)
22 COG0162 TyrS Tyrosyl-tRNA synt 100.0 1.4E-41 3.1E-46 331.5 17.6 234 59-309 7-265 (401)
23 KOG2713 Mitochondrial tryptoph 100.0 1.4E-41 2.9E-46 312.0 15.1 222 85-322 13-258 (347)
24 KOG2144 Tyrosyl-tRNA synthetas 100.0 3.3E-38 7.1E-43 290.3 11.4 233 59-310 10-255 (360)
25 KOG2623 Tyrosyl-tRNA synthetas 100.0 5.3E-35 1.2E-39 278.2 10.4 221 59-291 34-286 (467)
26 PTZ00348 tyrosyl-tRNA syntheta 100.0 3.4E-29 7.3E-34 258.4 14.1 182 112-308 401-587 (682)
27 cd00802 class_I_aaRS_core cata 99.4 2.9E-12 6.3E-17 108.9 9.9 65 208-282 78-143 (143)
28 cd00808 GluRS_core catalytic c 99.2 1.1E-10 2.4E-15 107.8 11.5 170 93-302 9-191 (239)
29 PRK00750 lysK lysyl-tRNA synth 98.9 3.2E-08 6.9E-13 100.9 14.1 206 75-291 14-293 (510)
30 cd00418 GlxRS_core catalytic c 98.9 3.4E-08 7.4E-13 90.8 12.5 168 93-302 9-182 (230)
31 cd00674 LysRS_core_class_I cat 98.8 1.4E-07 2.9E-12 92.1 14.3 208 75-292 10-289 (353)
32 TIGR00467 lysS_arch lysyl-tRNA 98.4 5E-06 1.1E-10 84.9 14.0 201 84-291 18-287 (515)
33 cd09287 GluRS_non_core catalyt 97.9 0.00011 2.5E-09 68.0 10.7 164 89-282 5-171 (240)
34 PF01921 tRNA-synt_1f: tRNA sy 97.6 0.00035 7.5E-09 68.3 9.9 62 236-300 239-309 (360)
35 PRK04156 gltX glutamyl-tRNA sy 97.6 0.00092 2E-08 69.1 13.4 79 84-171 100-179 (567)
36 cd00807 GlnRS_core catalytic c 97.5 0.00062 1.3E-08 63.1 10.0 158 93-282 9-169 (238)
37 PRK14895 gltX glutamyl-tRNA sy 97.5 0.001 2.2E-08 67.9 12.2 199 88-302 5-269 (513)
38 PRK01611 argS arginyl-tRNA syn 97.4 0.00037 8E-09 71.3 7.9 62 233-295 275-339 (507)
39 PRK05710 glutamyl-Q tRNA(Asp) 97.4 0.0025 5.4E-08 61.1 12.6 69 93-171 13-82 (299)
40 TIGR00464 gltX_bact glutamyl-t 97.4 0.0014 3E-08 66.6 11.3 66 233-302 199-270 (470)
41 cd00672 CysRS_core catalytic c 97.4 0.0014 3E-08 59.8 10.1 76 83-159 19-105 (213)
42 COG1384 LysS Lysyl-tRNA synthe 97.2 0.0041 8.9E-08 63.0 12.6 94 84-181 19-142 (521)
43 PRK01406 gltX glutamyl-tRNA sy 97.2 0.0039 8.5E-08 63.4 11.6 65 233-301 209-279 (476)
44 TIGR03838 queuosine_YadB gluta 97.1 0.017 3.7E-07 54.7 14.1 69 93-171 8-77 (272)
45 PTZ00402 glutamyl-tRNA synthet 97.0 0.0083 1.8E-07 62.3 12.7 71 91-171 58-129 (601)
46 PLN03233 putative glutamate-tR 97.0 0.0065 1.4E-07 62.3 11.7 68 93-171 19-87 (523)
47 PLN02627 glutamyl-tRNA synthet 96.7 0.03 6.4E-07 57.6 13.2 78 85-171 45-130 (535)
48 PRK00260 cysS cysteinyl-tRNA s 96.6 0.022 4.7E-07 57.8 12.0 73 85-158 23-107 (463)
49 COG0215 CysS Cysteinyl-tRNA sy 96.6 0.017 3.7E-07 58.2 10.4 72 86-158 23-106 (464)
50 PRK12558 glutamyl-tRNA synthet 96.3 0.043 9.2E-07 55.4 11.8 68 93-171 10-78 (445)
51 PLN02859 glutamine-tRNA ligase 96.3 0.08 1.7E-06 56.7 13.9 90 71-171 249-340 (788)
52 cd00671 ArgRS_core catalytic c 96.0 0.013 2.8E-07 53.1 5.5 45 236-282 164-211 (212)
53 TIGR00463 gltX_arch glutamyl-t 94.8 0.074 1.6E-06 55.1 7.0 69 93-171 101-169 (560)
54 PF00749 tRNA-synt_1c: tRNA sy 94.6 0.13 2.8E-06 49.6 7.8 68 233-302 201-274 (314)
55 PRK05347 glutaminyl-tRNA synth 94.2 0.39 8.4E-06 49.8 10.5 86 76-171 18-106 (554)
56 cd00668 Ile_Leu_Val_MetRS_core 94.1 0.042 9.1E-07 52.5 3.2 55 234-291 229-286 (312)
57 PTZ00437 glutaminyl-tRNA synth 94.1 0.12 2.6E-06 53.5 6.6 78 85-172 51-128 (574)
58 PRK12410 glutamylglutaminyl-tR 93.8 0.23 4.9E-06 50.1 8.0 68 93-171 7-75 (433)
59 COG0008 GlnS Glutamyl- and glu 93.8 0.14 3E-06 52.2 6.4 69 93-171 17-86 (472)
60 TIGR00440 glnS glutaminyl-tRNA 93.8 0.26 5.6E-06 50.8 8.4 70 93-171 8-77 (522)
61 PLN02907 glutamate-tRNA ligase 93.7 0.22 4.8E-06 53.3 8.0 69 92-171 220-289 (722)
62 PRK14703 glutaminyl-tRNA synth 92.7 0.41 9E-06 51.5 8.3 85 77-171 21-108 (771)
63 PRK00133 metG methionyl-tRNA s 92.0 0.47 1E-05 50.4 7.7 76 84-160 2-89 (673)
64 TIGR00456 argS arginyl-tRNA sy 91.3 0.2 4.2E-06 52.2 3.9 64 235-302 332-396 (566)
65 cd00818 IleRS_core catalytic c 91.2 0.2 4.4E-06 48.6 3.6 55 234-291 255-312 (338)
66 PRK00390 leuS leucyl-tRNA synt 91.0 0.52 1.1E-05 51.2 6.8 76 83-160 31-119 (805)
67 KOG1147 Glutamyl-tRNA syntheta 90.9 0.69 1.5E-05 47.6 7.0 64 91-162 206-269 (712)
68 cd02156 nt_trans nucleotidyl t 90.4 0.9 1.9E-05 36.2 6.1 63 89-158 3-65 (105)
69 cd00817 ValRS_core catalytic c 89.7 0.24 5.3E-06 48.9 2.7 55 234-291 299-356 (382)
70 PLN02224 methionine-tRNA ligas 88.7 1 2.2E-05 47.5 6.5 94 63-160 51-156 (616)
71 cd00812 LeuRS_core catalytic c 88.3 0.24 5.3E-06 47.5 1.6 52 236-291 229-288 (314)
72 PF09334 tRNA-synt_1g: tRNA sy 88.1 1.5 3.2E-05 43.6 7.1 67 93-160 9-86 (391)
73 COG0143 MetG Methionyl-tRNA sy 87.9 1.4 3E-05 45.9 6.9 74 84-158 5-90 (558)
74 PRK12451 arginyl-tRNA syntheta 87.1 0.76 1.6E-05 47.9 4.4 60 235-298 329-391 (562)
75 TIGR00398 metG methionyl-tRNA 85.4 1.7 3.6E-05 44.7 5.9 67 93-160 9-86 (530)
76 PRK12268 methionyl-tRNA synthe 85.2 2.1 4.5E-05 44.3 6.6 72 88-160 6-91 (556)
77 TIGR00396 leuS_bact leucyl-tRN 85.1 4.6 0.0001 44.2 9.4 77 83-160 28-116 (842)
78 PRK11893 methionyl-tRNA synthe 84.4 0.55 1.2E-05 47.8 1.9 53 235-291 258-312 (511)
79 PF00133 tRNA-synt_1: tRNA syn 83.5 0.81 1.8E-05 48.0 2.7 55 234-291 517-574 (601)
80 COG0018 ArgS Arginyl-tRNA synt 83.1 1.5 3.2E-05 45.9 4.4 67 233-300 337-405 (577)
81 cd00814 MetRS_core catalytic c 82.9 2 4.4E-05 41.2 5.1 66 94-160 11-87 (319)
82 cd00814 MetRS_core catalytic c 82.8 1.4 3.1E-05 42.2 3.9 52 236-291 240-293 (319)
83 TIGR00435 cysS cysteinyl-tRNA 82.8 4.4 9.6E-05 41.2 7.6 76 83-160 20-107 (465)
84 PRK13804 ileS isoleucyl-tRNA s 82.7 1 2.2E-05 49.9 3.2 54 234-290 586-642 (961)
85 PLN02286 arginine-tRNA ligase 82.4 1.9 4.2E-05 45.0 5.0 63 233-298 330-398 (576)
86 TIGR00392 ileS isoleucyl-tRNA 81.2 1.1 2.3E-05 49.1 2.6 55 234-291 567-624 (861)
87 PRK05743 ileS isoleucyl-tRNA s 80.9 1.3 2.9E-05 48.7 3.3 52 234-289 548-603 (912)
88 cd00812 LeuRS_core catalytic c 80.7 2.6 5.5E-05 40.5 4.8 66 94-160 11-87 (314)
89 PRK11893 methionyl-tRNA synthe 80.6 5.4 0.00012 40.5 7.4 67 93-160 11-88 (511)
90 COG0060 IleS Isoleucyl-tRNA sy 78.6 2.4 5.3E-05 46.6 4.3 59 234-299 558-619 (933)
91 PRK13208 valS valyl-tRNA synth 78.4 1.7 3.8E-05 47.0 3.2 54 234-291 489-546 (800)
92 TIGR00422 valS valyl-tRNA synt 78.3 1.9 4.1E-05 47.2 3.4 54 234-291 481-538 (861)
93 cd00668 Ile_Leu_Val_MetRS_core 78.2 3.7 8.1E-05 39.1 5.1 35 94-130 11-50 (312)
94 PRK05729 valS valyl-tRNA synth 77.2 2 4.4E-05 47.0 3.3 54 234-291 476-533 (874)
95 PLN02610 probable methionyl-tR 77.2 5.9 0.00013 43.1 6.7 76 84-160 17-105 (801)
96 PRK06039 ileS isoleucyl-tRNA s 76.7 2.3 5E-05 47.2 3.5 55 234-291 548-605 (975)
97 PF01406 tRNA-synt_1e: tRNA sy 76.5 10 0.00022 36.5 7.4 75 84-160 7-94 (300)
98 PRK12267 methionyl-tRNA synthe 76.2 5.9 0.00013 41.9 6.3 76 84-160 4-91 (648)
99 PRK14900 valS valyl-tRNA synth 76.2 2.5 5.4E-05 47.3 3.7 54 234-291 494-551 (1052)
100 PF09334 tRNA-synt_1g: tRNA sy 75.9 0.99 2.1E-05 44.9 0.4 53 233-291 284-340 (391)
101 PF00750 tRNA-synt_1d: tRNA sy 75.9 1.1 2.4E-05 43.8 0.8 67 233-302 241-312 (354)
102 TIGR00398 metG methionyl-tRNA 75.8 2.1 4.6E-05 43.9 2.8 54 234-291 285-340 (530)
103 cd02168 NMNAT_Nudix Nicotinami 74.8 22 0.00048 31.5 8.7 69 88-166 3-73 (181)
104 PRK12267 methionyl-tRNA synthe 74.7 1.6 3.5E-05 46.1 1.6 53 235-291 258-312 (648)
105 PRK12268 methionyl-tRNA synthe 74.1 1.9 4.1E-05 44.6 2.0 53 235-291 291-347 (556)
106 PRK12418 cysteinyl-tRNA synthe 73.3 2.9 6.4E-05 41.5 3.0 72 85-157 9-92 (384)
107 PF06543 Lac_bphage_repr: Lact 73.2 3 6.5E-05 29.0 2.1 31 26-57 16-46 (49)
108 PLN02882 aminoacyl-tRNA ligase 72.6 2.9 6.4E-05 47.3 3.1 52 233-288 569-624 (1159)
109 PLN02843 isoleucyl-tRNA synthe 72.1 3.2 6.9E-05 46.1 3.2 52 234-289 567-622 (974)
110 cd00818 IleRS_core catalytic c 72.1 8.9 0.00019 37.2 6.0 44 86-130 3-51 (338)
111 COG0495 LeuS Leucyl-tRNA synth 71.3 7.9 0.00017 42.1 5.9 77 84-162 34-123 (814)
112 cd00817 ValRS_core catalytic c 71.0 12 0.00027 36.9 6.8 43 86-129 3-50 (382)
113 PLN02943 aminoacyl-tRNA ligase 70.5 3.3 7.1E-05 46.0 2.9 54 234-291 539-596 (958)
114 PRK14536 cysS cysteinyl-tRNA s 70.2 16 0.00034 37.6 7.5 75 84-160 22-119 (490)
115 PLN02959 aminoacyl-tRNA ligase 69.3 4.1 8.9E-05 45.8 3.3 53 235-291 675-731 (1084)
116 PRK12300 leuS leucyl-tRNA synt 68.7 2.7 5.8E-05 46.3 1.7 26 262-291 565-590 (897)
117 PLN02563 aminoacyl-tRNA ligase 68.7 14 0.0003 41.2 7.2 77 83-160 109-198 (963)
118 PLN02381 valyl-tRNA synthetase 68.2 5.5 0.00012 44.7 4.0 54 234-291 611-668 (1066)
119 TIGR03447 mycothiol_MshC cyste 68.0 4.3 9.4E-05 40.7 2.9 70 88-158 40-120 (411)
120 PRK12418 cysteinyl-tRNA synthe 67.3 18 0.00038 36.1 7.0 23 265-290 251-273 (384)
121 PF01406 tRNA-synt_1e: tRNA sy 66.8 2.2 4.7E-05 41.1 0.4 57 237-298 212-277 (300)
122 PLN02224 methionine-tRNA ligas 66.7 4.1 9E-05 43.0 2.6 52 236-291 326-379 (616)
123 PRK00133 metG methionyl-tRNA s 66.3 4.6 0.0001 43.0 2.9 50 236-291 289-342 (673)
124 PLN02943 aminoacyl-tRNA ligase 66.1 18 0.00039 40.3 7.4 60 61-129 73-136 (958)
125 PTZ00427 isoleucine-tRNA ligas 66.1 5 0.00011 45.6 3.2 53 233-288 675-730 (1205)
126 PTZ00419 valyl-tRNA synthetase 65.5 5 0.00011 44.7 3.0 53 234-290 541-597 (995)
127 TIGR00395 leuS_arch leucyl-tRN 63.9 4.7 0.0001 44.6 2.4 53 234-291 576-633 (938)
128 KOG1148 Glutaminyl-tRNA synthe 63.7 19 0.00042 37.8 6.5 72 88-171 249-324 (764)
129 PLN02946 cysteine-tRNA ligase 63.7 21 0.00045 37.4 6.9 73 85-158 80-164 (557)
130 TIGR03447 mycothiol_MshC cyste 62.2 30 0.00064 34.8 7.5 24 264-290 277-300 (411)
131 COG0143 MetG Methionyl-tRNA sy 62.0 5.3 0.00011 41.7 2.3 53 236-291 293-346 (558)
132 PRK14536 cysS cysteinyl-tRNA s 61.8 4.7 0.0001 41.4 1.9 25 263-291 268-292 (490)
133 COG0525 ValS Valyl-tRNA synthe 61.0 7.6 0.00017 42.5 3.3 54 234-291 481-538 (877)
134 TIGR00435 cysS cysteinyl-tRNA 60.8 5.2 0.00011 40.7 2.0 52 236-291 224-278 (465)
135 PLN02563 aminoacyl-tRNA ligase 60.1 4.6 0.0001 44.8 1.5 14 277-291 723-736 (963)
136 PTZ00419 valyl-tRNA synthetase 59.3 14 0.00031 41.2 5.2 46 83-129 59-108 (995)
137 PLN02610 probable methionyl-tR 59.1 5.3 0.00012 43.5 1.8 52 236-291 306-361 (801)
138 KOG0435 Leucyl-tRNA synthetase 57.9 16 0.00034 39.1 4.8 59 59-126 40-102 (876)
139 PRK14534 cysS cysteinyl-tRNA s 57.1 36 0.00077 35.0 7.2 74 85-160 21-117 (481)
140 TIGR00422 valS valyl-tRNA synt 56.2 30 0.00065 37.9 7.0 61 60-129 17-81 (861)
141 PRK14535 cysS cysteinyl-tRNA s 55.9 36 0.00078 36.5 7.1 76 84-160 247-334 (699)
142 PRK05379 bifunctional nicotina 53.8 65 0.0014 31.3 8.2 70 84-165 6-77 (340)
143 PRK13793 nicotinamide-nucleoti 53.0 1.4E+02 0.0029 27.1 9.5 56 85-147 5-62 (196)
144 PTZ00399 cysteinyl-tRNA-synthe 52.0 42 0.00091 35.8 7.0 74 85-159 60-147 (651)
145 PRK05729 valS valyl-tRNA synth 51.8 23 0.0005 38.9 5.2 60 60-129 21-84 (874)
146 KOG2007 Cysteinyl-tRNA synthet 50.9 32 0.00068 35.6 5.5 46 83-129 53-105 (586)
147 PLN02946 cysteine-tRNA ligase 50.0 6.1 0.00013 41.2 0.4 26 262-291 311-336 (557)
148 KOG0433 Isoleucyl-tRNA synthet 49.8 18 0.00039 39.0 3.7 59 234-299 569-630 (937)
149 TIGR00396 leuS_bact leucyl-tRN 49.6 6.5 0.00014 43.0 0.6 14 277-291 604-617 (842)
150 PRK14535 cysS cysteinyl-tRNA s 46.5 7.8 0.00017 41.4 0.5 26 262-291 496-521 (699)
151 PRK13208 valS valyl-tRNA synth 45.6 21 0.00045 38.9 3.6 46 83-129 37-86 (800)
152 PF00750 tRNA-synt_1d: tRNA sy 43.9 37 0.00079 33.2 4.8 40 89-129 26-70 (354)
153 PRK00777 phosphopantetheine ad 43.6 78 0.0017 27.2 6.3 46 235-282 92-137 (153)
154 PRK00390 leuS leucyl-tRNA synt 42.2 12 0.00026 40.7 1.2 14 277-291 570-583 (805)
155 PF00133 tRNA-synt_1: tRNA syn 41.7 40 0.00087 35.4 4.9 44 82-126 21-68 (601)
156 cd02166 NMNAT_Archaea Nicotina 41.5 2.3E+02 0.005 24.4 9.4 70 88-168 3-75 (163)
157 TIGR00456 argS arginyl-tRNA sy 41.4 30 0.00066 36.0 4.0 40 88-129 117-162 (566)
158 PTZ00399 cysteinyl-tRNA-synthe 41.3 7.9 0.00017 41.2 -0.4 27 261-291 302-328 (651)
159 PF00701 DHDPS: Dihydrodipicol 41.3 3E+02 0.0065 25.6 12.8 133 16-185 9-154 (289)
160 COG0008 GlnS Glutamyl- and glu 41.0 21 0.00046 36.5 2.7 54 233-290 208-261 (472)
161 COG0525 ValS Valyl-tRNA synthe 40.7 23 0.0005 38.9 3.0 36 94-130 44-82 (877)
162 PRK14534 cysS cysteinyl-tRNA s 40.0 18 0.00038 37.2 1.9 25 263-291 268-292 (481)
163 COG5309 Exo-beta-1,3-glucanase 39.8 2.8E+02 0.0061 26.6 9.6 113 38-159 57-172 (305)
164 KOG1149 Glutamyl-tRNA syntheta 37.4 91 0.002 31.8 6.3 43 86-129 34-76 (524)
165 PF00749 tRNA-synt_1c: tRNA sy 37.3 30 0.00066 33.3 3.0 69 93-171 9-78 (314)
166 TIGR00234 tyrS tyrosyl-tRNA sy 37.1 19 0.0004 35.7 1.5 44 245-289 195-243 (377)
167 PF06574 FAD_syn: FAD syntheta 36.8 85 0.0018 27.0 5.5 43 84-129 5-47 (157)
168 KOG0432 Valyl-tRNA synthetase 36.3 29 0.00062 38.1 2.8 54 234-291 549-606 (995)
169 PLN02381 valyl-tRNA synthetase 35.2 46 0.00099 37.6 4.3 61 60-129 112-176 (1066)
170 PRK14900 valS valyl-tRNA synth 33.9 39 0.00086 38.0 3.6 46 83-129 47-96 (1052)
171 COG0018 ArgS Arginyl-tRNA synt 33.2 49 0.0011 34.8 3.9 39 89-129 123-167 (577)
172 PLN02660 pantoate--beta-alanin 31.1 76 0.0017 30.3 4.5 53 242-301 157-209 (284)
173 PLN02843 isoleucyl-tRNA synthe 31.0 1.3E+02 0.0028 33.7 6.9 44 82-126 30-77 (974)
174 cd02064 FAD_synthetase_N FAD s 30.9 72 0.0016 27.8 4.1 33 97-129 9-41 (180)
175 TIGR00125 cyt_tran_rel cytidyl 29.4 95 0.0021 21.8 3.9 27 97-127 9-35 (66)
176 COG0495 LeuS Leucyl-tRNA synth 28.8 30 0.00065 37.8 1.5 16 275-291 577-592 (814)
177 KOG2426 Dihydroxyacetone kinas 27.6 7.2E+02 0.016 25.9 11.3 60 65-130 78-140 (582)
178 PRK12451 arginyl-tRNA syntheta 27.6 67 0.0014 33.6 3.8 40 89-129 119-163 (562)
179 cd02167 NMNAT_NadR Nicotinamid 27.2 1.8E+02 0.0039 25.0 5.9 49 88-143 3-53 (158)
180 TIGR01527 arch_NMN_Atrans nico 26.6 2.4E+02 0.0052 24.5 6.6 46 88-140 3-50 (165)
181 TIGR00395 leuS_arch leucyl-tRN 26.1 37 0.0008 37.7 1.7 40 83-123 24-67 (938)
182 TIGR00124 cit_ly_ligase [citra 26.0 1E+02 0.0022 30.0 4.5 62 29-107 94-159 (332)
183 TIGR03569 NeuB_NnaB N-acetylne 25.7 4.2E+02 0.009 25.8 8.7 69 46-123 125-199 (329)
184 cd02173 ECT CTP:phosphoethanol 25.7 1.2E+02 0.0026 26.0 4.5 29 97-129 12-40 (152)
185 PRK05627 bifunctional riboflav 25.4 83 0.0018 30.2 3.8 41 86-129 15-55 (305)
186 PRK04147 N-acetylneuraminate l 25.1 5.7E+02 0.012 23.9 11.7 141 16-187 11-159 (293)
187 PF01467 CTP_transf_2: Cytidyl 25.1 2.1E+02 0.0046 23.0 5.8 43 97-142 7-52 (157)
188 PLN02286 arginine-tRNA ligase 24.8 65 0.0014 33.8 3.1 39 89-129 123-167 (576)
189 TIGR00392 ileS isoleucyl-tRNA 24.8 71 0.0015 35.1 3.5 43 83-126 35-81 (861)
190 cd00560 PanC Pantoate-beta-ala 24.5 1.6E+02 0.0035 28.0 5.5 37 67-107 4-41 (277)
191 cd02164 PPAT_CoAS phosphopante 24.1 2.4E+02 0.0052 23.9 6.0 31 96-129 8-38 (143)
192 COG0414 PanC Panthothenate syn 23.7 1E+02 0.0023 29.4 4.0 52 242-300 153-204 (285)
193 PRK13964 coaD phosphopantethei 23.5 2.9E+02 0.0062 23.5 6.3 48 86-142 3-51 (140)
194 COG0196 RibF FAD synthase [Coe 23.4 1.3E+02 0.0029 29.0 4.8 42 86-130 17-58 (304)
195 PRK12410 glutamylglutaminyl-tR 22.2 64 0.0014 32.7 2.4 66 233-302 192-264 (433)
196 PRK15458 tagatose 6-phosphate 22.2 1.6E+02 0.0035 29.8 5.2 60 89-158 59-122 (426)
197 PRK13477 bifunctional pantoate 22.0 1.7E+02 0.0036 30.4 5.4 36 67-107 4-39 (512)
198 KOG0432 Valyl-tRNA synthetase 21.8 85 0.0019 34.6 3.3 34 95-130 87-124 (995)
199 TIGR02810 agaZ_gatZ D-tagatose 21.0 1.9E+02 0.0041 29.3 5.3 60 89-158 55-118 (420)
200 PF08013 Tagatose_6_P_K: Tagat 20.8 55 0.0012 33.0 1.5 48 111-158 72-122 (424)
201 cd07321 Extradiol_Dioxygenase_ 20.5 40 0.00086 25.7 0.4 35 125-159 23-58 (77)
202 PLN02959 aminoacyl-tRNA ligase 20.4 59 0.0013 36.8 1.9 30 93-123 55-87 (1084)
No 1
>KOG2145 consensus Cytoplasmic tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8e-101 Score=703.58 Aligned_cols=313 Identities=65% Similarity=1.135 Sum_probs=303.6
Q ss_pred hhhhcccccccCcccC--CCCccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCceeecCCHHHHHHHHHhCCce
Q 020745 9 REEEREQVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKF 86 (322)
Q Consensus 9 ~~~~~~~~~~pw~v~~--~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~ 86 (322)
..+.+|++||||+|++ ..+|||||||.+|||++|++++++|+|++||++||+|+|||+||+|||++.||+++|+|+||
T Consensus 7 ~~~~~Eq~vtPW~V~~~~~~~IDYdklI~~FG~~k~deeli~R~ek~tg~~~h~flRrg~fFshRDf~~iLd~~eq~kpF 86 (397)
T KOG2145|consen 7 ATEVEEQRVTPWDVETSSADGIDYDKLIVQFGCSKIDEELIDRFEKLTGKPPHHFLRRGIFFSHRDFNLILDAYEQGKPF 86 (397)
T ss_pred ccchhhcccCcceeecccCCCccHHHHHHHhCcccCCHHHHHHHHHhcCCCchHHhhhcceeecccHHHHHHHHHcCCce
Confidence 4677899999999987 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe
Q 020745 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 166 (322)
Q Consensus 87 ~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ 166 (322)
|+|||++||+++|||||++|+++++|||++|++|++|+++|+|+++++.++.|++.++++||+++|+|+||||++|+||+
T Consensus 87 yLYTGRGpSS~smHlGHliPFiftKwlQe~F~vpLVIqlTDDEKflwK~l~~eda~~~arENaKDIia~GFDp~kTfIFs 166 (397)
T KOG2145|consen 87 YLYTGRGPSSESMHLGHLIPFIFTKWLQDVFDVPLVIQLTDDEKFLWKDLTLEDAKKYARENAKDIIAVGFDPKKTFIFS 166 (397)
T ss_pred EEEeCCCCCccccccccchhHHHHHHHHHHhCCceEEEecccHHHHHhhCcHHHHHHHHHhcccceEEeccCCcceEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc-ccHHHHHHHHcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcccccccccChhhHH
Q 020745 167 DFDYVGG-AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYF 245 (322)
Q Consensus 167 ns~~~~~-~~~~~~~~l~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~ 245 (322)
|.+|++. .||.++++++|++|+|+++++|||+++.++|++.||..|||++|++|||+|+....|++|||||++|||||+
T Consensus 167 n~~y~g~~~fy~nivki~k~vt~nqa~~iFGF~~sd~igk~~Fpa~qaap~fssSFp~if~~~~~~~CLiPcAiDQDPyF 246 (397)
T KOG2145|consen 167 NLDYMGGPAFYENIVKISKCVTLNQAKAIFGFTDSDCIGKIGFPAIQAAPSFSSSFPFIFGGRDDIPCLIPCAIDQDPYF 246 (397)
T ss_pred chhhccCcHHHHHHHHHhheechhhheeeeccCCccccccccCchhhhcccccccchhhcCCCcCCceeceeeccCChHH
Confidence 9999874 899999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred HHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhccCccCCCccccccCC---CCCC
Q 020745 246 RMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQVCIFWRTR---KCGI 321 (322)
Q Consensus 246 ~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t~~~~~~~~~~~---~~~~ 321 (322)
|||||+|+|++++||+.+|+.|+|.|+|+++|||.|+|+++|||+|++++|++||++||||||+.+++-+.+ +|+|
T Consensus 247 RmtRDvA~rlg~~Kpali~stffpaLqG~~~KMSASdpns~Ifltdt~~qIk~KI~~~afSGGr~tiEeHRe~GGn~dV 325 (397)
T KOG2145|consen 247 RMTRDVAPRLGYPKPALIHSTFFPALQGAQTKMSASDPNSAIFLTDTAKQIKNKINKYAFSGGRDTIEEHRELGGNPDV 325 (397)
T ss_pred HhhhhhhhhhCCCCcceeehhhchhhhCcccccccCCCCceEEecCcHHHHHHHHHHhhccCCcchHHHHHHhCCCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999887743 7765
No 2
>PLN02486 aminoacyl-tRNA ligase
Probab=100.00 E-value=1.9e-91 Score=680.79 Aligned_cols=307 Identities=82% Similarity=1.329 Sum_probs=289.7
Q ss_pred cccccCcccC--CCCccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCceeecCCHHHHHHHHHhCCceEEEEee
Q 020745 15 QVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (322)
Q Consensus 15 ~~~~pw~v~~--~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~ 92 (322)
+.||||+|++ .+.|||+|||++|||++||+++++|++++||+++|+|+|||+||+|||++.+|+++++|+++++||||
T Consensus 1 ~~v~pw~v~~~~~~~~dy~kl~~~fg~~~i~~~~~~r~~~~~~~~~h~~lrRgi~~~hrd~~~~l~~~e~~~~~~vYtG~ 80 (383)
T PLN02486 1 QVVTPWEVSAKDGGKIDYDKLVDKFGCQRLDPSLIDRVERLTGRPAHPFLRRGVFFAHRDLEEILDAYEKGEKFYLYTGR 80 (383)
T ss_pred CccCCccccCCCCCCcCHHHHHHHhCCCcCCHHHHHHHHHhcCCCCCcccccceeeeccCHHHHHHHHhcCCCeEEEeCC
Confidence 4699999994 35899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecccccc
Q 020745 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172 (322)
Q Consensus 93 ~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~ 172 (322)
+|||++|||||++++++++|||+++|++++|+|||+++++++.+++|++++++++|+++|+|+||||+|++||+|++|..
T Consensus 81 ~PSg~~lHlGHlv~~~~~~~lQ~~~~~~~~I~iaD~e~~~~~~~~~e~i~~~~~en~~~iiA~G~dp~kt~I~s~~~~~~ 160 (383)
T PLN02486 81 GPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYVG 160 (383)
T ss_pred CCCCccccHHHHHHHHHHHHHHHhCCCeEEEEecCHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEeccHHHh
Confidence 99998899999999999999999999999999999999998889999999999999999999999999999999999976
Q ss_pred cccHHHHHHHHcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcccccccccChhhHHHHHHHHH
Q 020745 173 GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVA 252 (322)
Q Consensus 173 ~~~~~~~~~l~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~~ltrdla 252 (322)
..||.+++++++++|++++++++||.++.++|+++||++||||+|+.+||+++....+++|+||||+|||||++||||+|
T Consensus 161 ~~~~~~~~~l~r~~t~~~~~~~~gf~~~~~ig~~~YP~lQaadi~~~~~~~l~~~~~~~~~lVPvG~DQd~~~~ltRdia 240 (383)
T PLN02486 161 GAFYKNMVKIAKCVTLNQVRGIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCAIDQDPYFRMTRDVA 240 (383)
T ss_pred HhHHHHHHHHHhhCcHHHHHHhhCcCCCCCchhhhhHHHHHhhhhhhccHHHhCCCcCCcceeecccchHHHHHHHHHHH
Confidence 67999999999999999999999998899999999999999999999999998765568999999999999999999999
Q ss_pred HHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhccCccCCCcccccc---CCCCCC
Q 020745 253 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQVCIFWR---TRKCGI 321 (322)
Q Consensus 253 ~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t~~~~~~~~~---~~~~~~ 321 (322)
+|+|+.+|+.++++++|+|+|+++|||||.|||+|||+|+|++|++||+++|+|||+.++... +++|++
T Consensus 241 ~r~~~~kp~~~~~~~lp~L~g~~~KMSkS~~nsaI~L~D~p~~i~~KI~k~A~t~~~~t~~~~~~~gg~p~v 312 (383)
T PLN02486 241 PRLGYYKPALIESRFFPALQGESGKMSASDPNSAIYVTDTPKEIKNKINKYAFSGGQDTVEEHRELGANLEV 312 (383)
T ss_pred HHhCCCCcceeccccccCCCCCCCcCcCcCCCCeeeccCCHHHHHHHHhcCCCCCCCCcccccccCCCCCcc
Confidence 999999999999999999999878999999888999999999999999999999999876543 346655
No 3
>PRK12285 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.2e-80 Score=603.48 Aligned_cols=290 Identities=39% Similarity=0.675 Sum_probs=268.5
Q ss_pred hcccccccCcccCCCCccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCceeecCCHHHHHHHHHhCCceEEEEe
Q 020745 12 EREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTG 91 (322)
Q Consensus 12 ~~~~~~~pw~v~~~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG 91 (322)
++++.||||+|++ .+||+||+++||++|||+++++ +++ +|+|+|||+||+|||++.+++++++|+++++|||
T Consensus 1 ~~~~~v~pw~~~~--~~dy~kl~~~fg~~~~~~~~~~-~~~-----~h~~~rR~~~~~hrd~d~il~~~~~~~~~~iytG 72 (368)
T PRK12285 1 EDEFMVTPWEVSG--IVDYDKLFEEFGIEPFTEVLPE-LPE-----PHPLMRRGIIFGHRDYDKILEAYRNGKPFAVYTG 72 (368)
T ss_pred CCCceeCCCcCcC--cccHHHHHHHhCCCcCChHHHh-ccc-----cchHHhcCeeeecCCHHHHHHHHhcCCCeEEEEc
Confidence 3578999999998 8999999999999999999998 998 5999999999999999999999999999999999
Q ss_pred eccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 020745 92 RGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (322)
Q Consensus 92 ~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (322)
++||| +|||||++++++++|||+ +|++++|+|||+||+++|..+++++++++++++++|+||||||++++||.||+|.
T Consensus 73 ~~PSG-~lHLGh~~~~~~~~~lQ~-~g~~~~i~IaD~ha~~~~~~~~e~~~~~~~~~~~~~lA~G~Dp~k~~i~~qS~~~ 150 (368)
T PRK12285 73 FMPSG-PMHIGHKMVFDELKWHQE-FGANVYIPIADDEAYAARGLSWEETREWAYEYILDLIALGFDPDKTEIYFQSENI 150 (368)
T ss_pred cCCCC-CccHHHHHHHHHHHHHHh-cCCCEEEEecchHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEECCchH
Confidence 99998 899999999999999999 5899999999999988877999999999999999999999999999999999996
Q ss_pred ccccHHHHHHHHcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcccccccccChhhHHHHHHHH
Q 020745 172 GGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDV 251 (322)
Q Consensus 172 ~~~~~~~~~~l~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~~ltrdl 251 (322)
.+|..++.+++.+|++++++++||++++|+|+++||+|||||+| ||++.. ...+|+||||.||+||++||||+
T Consensus 151 --~~~~l~~~l~~~~t~~~l~r~~~f~~~~~~g~~~YP~lQaADil---~~~~~~--~~~~~lvPvG~DQ~~h~~ltRdi 223 (368)
T PRK12285 151 --KVYDLAFELAKKVNFSELKAIYGFTGETNIGHIFYPATQAADIL---HPQLEE--GPKPTLVPVGIDQDPHIRLTRDI 223 (368)
T ss_pred --HHHHHHHHHHhhCcHHHHHHhhCCCCCCchhhhhhhHHHHHHHH---hhcccc--cCCceEEEeccchHHHHHHHHHH
Confidence 48888899999999999999999999999999999999999988 566543 23569999999999999999999
Q ss_pred HHHh----CCCCceeeecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhccCccCCCcccccc---CCCCCC
Q 020745 252 APRI----GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQVCIFWR---TRKCGI 321 (322)
Q Consensus 252 a~k~----~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t~~~~~~~~~---~~~~~~ 321 (322)
|+|+ |+++|+.++++++|||+| +|||||.|+|+|||+|+|++|++||++ |+|||+.++..+ +++|++
T Consensus 224 A~r~n~~~gf~~P~~l~~~~lpgL~G--~KMSkS~~~s~I~L~D~p~~I~kKI~k-A~Td~~~t~~~~~~~~g~p~~ 297 (368)
T PRK12285 224 AERLHGGYGFIKPSSTYHKFMPGLTG--GKMSSSKPESAIYLTDDPETVKKKIMK-ALTGGRATLEEQRKLGGEPDE 297 (368)
T ss_pred HHHHhhhcCCCCchhHhhhcccCCCC--CcCCCCCCCCeeeccCCHHHHHHHHHh-CcCCCCcccccccccCCCCCc
Confidence 9999 889999999999999998 799999999999999999999999999 999998876543 235544
No 4
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.6e-55 Score=413.80 Aligned_cols=224 Identities=28% Similarity=0.394 Sum_probs=196.8
Q ss_pred CCceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccCCCH-HHHHHHHHHHHHHHHHcCCCCCc
Q 020745 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSV-EESQRLARENAKDIIACGFDVTK 161 (322)
Q Consensus 83 ~~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~-e~i~~~~~~~~~~iiA~G~dp~k 161 (322)
..+++||||++||| .|||||+++++..+|.|+..+..+++.|||+|++..+..++ +.++.++++++++|+|+|+||+|
T Consensus 3 ~~~~~vlSG~~PSG-~lHLGny~ga~~~~v~~q~~~~~~f~~IaDlha~t~~~~~~~~~l~~~~~e~~a~~LA~GiDP~k 81 (314)
T COG0180 3 MKKFRVLSGIQPSG-KLHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEEDLRQATREVAADYLAVGLDPEK 81 (314)
T ss_pred CCCceEEecCCCCC-CcchhHhHHHHHHHHHHhcccCceEEEEecHHHhhcCCCChHHHHHHHHHHHHHHHHHhccCccc
Confidence 46789999999999 79999999999888866554468899999999988776333 88999999999999999999999
Q ss_pred eEEEecccccccccHHHHHHHHcccCHHHHHHhhCCCCCc-------cccccchhhhhcCCCCCCCccccccCCCCcccc
Q 020745 162 TFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGED-------HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCL 234 (322)
Q Consensus 162 t~I~~ns~~~~~~~~~~~~~l~k~~t~~~~~~~~g~~~~~-------s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~l 234 (322)
++||.||++++ .+...+.++..++++++.+..+|++.. ++|.++||+||||| |+.+++ |+
T Consensus 82 ~~if~QS~v~e--~~eLa~~l~~~~~~gel~r~~~fKdk~~~~~~~~~~Gl~~YPvlqAAD--------ILl~~a---~~ 148 (314)
T COG0180 82 STIFLQSEVPE--HAELAWLLSCVTNFGELERMTQFKDKSAKKGESIPIGLLTYPVLQAAD--------ILLYQA---TL 148 (314)
T ss_pred cEEEEccCchH--HHHHHHHHHccCcHHHHHhhcCcchhhhcccccccccchhccHHHHHH--------hhhccC---Ce
Confidence 99999999864 677778899999999999999887654 49999999999996 555666 99
Q ss_pred cccccChhhHHHHHHHHHHHhC------CCCceeeecc--cccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhccCcc
Q 020745 235 IPCAIDQDPYFRMTRDVAPRIG------YHKPALIESS--FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCA 306 (322)
Q Consensus 235 vp~G~DQd~~~~ltrdla~k~~------~~kp~~l~~~--~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t 306 (322)
||||.||+||+|||||||+|+| +++|..+++. ++|+|+|+ +|||||.|||+|+|+|+|++|++||++ |.|
T Consensus 149 VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~~~i~gL~g~-~KMSkS~~ns~I~L~D~~~~i~kKI~~-~~t 226 (314)
T COG0180 149 VPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKVARLPGLDGP-GKMSKSDPNSAIFLLDDPKTIRKKIKK-AAT 226 (314)
T ss_pred eccCCCchHHHHHHHHHHHHHHhhcCCccCCccccccCCCcccCCCCC-CcccccCCCCeeeccCCHHHHHHHHHH-hcc
Confidence 9999999999999999999999 7899999988 99999997 999999988899999999999999999 666
Q ss_pred CCCcccccc-CCCCCCC
Q 020745 307 DKQVCIFWR-TRKCGIT 322 (322)
Q Consensus 307 ~~~~~~~~~-~~~~~~~ 322 (322)
++...+.++ +++|+++
T Consensus 227 d~~~~~~~~~~g~Pe~~ 243 (314)
T COG0180 227 DGPTLIEYRKGGKPEVC 243 (314)
T ss_pred CCCCccccCCCCCCCcc
Confidence 665556666 4599875
No 5
>PRK08560 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=1.3e-54 Score=417.03 Aligned_cols=235 Identities=27% Similarity=0.370 Sum_probs=208.1
Q ss_pred hhhhcCceeecCCHHHHHHHHHhCCceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccCCCHH
Q 020745 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVE 139 (322)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e 139 (322)
.+++||...... .++|.+++++++++++|+|++||| .|||||+++++.++|||++ |++++|+|||+|+++.++.+++
T Consensus 6 ~~~~~~~~e~~~-~~el~~~l~~~~~~~v~~G~~PTG-~lHLG~~~~~~~~~~lq~~-g~~~~i~IaD~ha~~~~~~~~~ 82 (329)
T PRK08560 6 ELITRNTEEVVT-EEELRELLESKEEPKAYIGFEPSG-KIHLGHLLTMNKLADLQKA-GFKVTVLLADWHAYLNDKGDLE 82 (329)
T ss_pred HHHHhCceeecC-HHHHHHHHhCCCCCEEEEccCCCC-cchhhhhHHHHHHHHHHHC-CCeEEEEEccchhhcCCCCCHH
Confidence 457788765544 477777888789999999999999 7999999999999999996 8899999999999887668999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEeccccccc-ccHHHHHHHHcccCHHHHHHh---hCCC-CCccccccchhhhhcC
Q 020745 140 ESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGI---FGFT-GEDHIGKVSFPPVQAV 214 (322)
Q Consensus 140 ~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~~-~~~~~~~~l~k~~t~~~~~~~---~g~~-~~~s~~~~~YP~lQaa 214 (322)
++++++++++++|+|+|+||+++.||.||+|..+ .||..++++++++|++++.+. +++. ++.++|+|+||+||||
T Consensus 83 ~i~~~~~~~~~~~~A~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~~~~~l~r~~~~~~~~~~~~~~g~l~YP~lqaa 162 (329)
T PRK08560 83 EIRKVAEYNKKVFEALGLDPDKTEFVLGSEFQLDKEYWLLVLKLAKNTTLARARRSMTIMGRRMEEPDVSKLVYPLMQVA 162 (329)
T ss_pred HHHHHHHHHHHHHHHcCCChhheEEEecchhhccchHHHHHHHHHhhccHHHHHHhhhhhcccCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999765 588999999999999999884 4443 3569999999999999
Q ss_pred CCCCCCccccccCCCCcccccccccChhhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCCCHH
Q 020745 215 PSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAK 294 (322)
Q Consensus 215 d~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~ 294 (322)
| ++.+++ .+||+|.||+||+++|||+|+|+|+.+|..+++++||+|+|+++|||||.|+|+|||+|+|+
T Consensus 163 D--------il~~~a---d~vpvG~DQ~~h~~l~Rdia~~~n~~~p~~l~~~~l~~L~g~~~KMSKS~p~~~I~L~D~~~ 231 (329)
T PRK08560 163 D--------IFYLDV---DIAVGGMDQRKIHMLAREVLPKLGYKKPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDSPE 231 (329)
T ss_pred H--------HHHhCC---CEEEechhHHHHHHHHHHhhHhcCCCCceEEEcCccCCCCCCCCCCcCCCCCCeecccCCHH
Confidence 7 455665 47899999999999999999999999999999999999999766999999999999999999
Q ss_pred HHHHHHhccCccCC
Q 020745 295 AIKNKIILLKCADK 308 (322)
Q Consensus 295 ~i~~KI~k~a~t~~ 308 (322)
+|++||++|+|.++
T Consensus 232 ~I~~KI~kA~t~~~ 245 (329)
T PRK08560 232 EIRRKIKKAYCPPG 245 (329)
T ss_pred HHHHHHHhccCCCC
Confidence 99999999544443
No 6
>cd00806 TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase. Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. TrpRS is a homodimer which attaches Tyr to the appropriate tRNA. TrpRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding
Probab=100.00 E-value=5.1e-54 Score=404.63 Aligned_cols=220 Identities=39% Similarity=0.592 Sum_probs=196.4
Q ss_pred EEEEeeccCCCCcchhhhHH-HHHHHHHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 020745 87 YLYTGRGPSSEALHLGHLVP-FMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF 165 (322)
Q Consensus 87 ~vytG~~PSg~slHlGhli~-~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~ 165 (322)
++|+|++||| +|||||+++ +...++||++ |+.++|+|||+|+++.+..+++++++++++++++|+|+||||++++||
T Consensus 1 ~i~tG~~PTG-~lHLG~~~~al~~~~~lQ~a-g~~~~~~IaD~ha~t~~~~~~~~~~~~~~~~~~~~lA~G~dp~k~~i~ 78 (280)
T cd00806 1 RVLSGIQPSG-SLHLGHYLGAFRFWVWLQEA-GYELFFFIADLHALTVKQLDPEELRQNTRENAKDYLACGLDPEKSTIF 78 (280)
T ss_pred CEEEeeCCCc-hhhHHHHHHHHHHHHHHHhC-CCCEEEEecchHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCcccCEEE
Confidence 4899999999 999999999 7788899997 899999999999987654699999999999999999999999999999
Q ss_pred ecccccccccHHHHHHHHcccCHHHHHHhhCCCC------CccccccchhhhhcCCCCCCCccccccCCCCccccccccc
Q 020745 166 SDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTG------EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 239 (322)
Q Consensus 166 ~ns~~~~~~~~~~~~~l~k~~t~~~~~~~~g~~~------~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~ 239 (322)
.||+|. .++...+.+++.+|++++.+..+|++ ++++|+|+||+|||||+ +.+++ |+||+|.
T Consensus 79 ~qS~~~--~~~~l~~~l~~~~~~~~l~r~~~fk~~~~~~~~~~~g~~~YP~lqaaDi--------l~~~~---~~vpvG~ 145 (280)
T cd00806 79 FQSDVP--EHYELAWLLSCVVTFGELERMTGFKDKSAQGESVNIGLLTYPVLQAADI--------LLYKA---CLVPVGI 145 (280)
T ss_pred EcCCcH--HHHHHHHHHhCcCCHHHHHhccchhhhhccCCCCcchhhcchHHHHhhh--------hhccC---CEEeecc
Confidence 999996 57778888999999999999888765 89999999999999974 44555 9999999
Q ss_pred ChhhHHHHHHHHHHHhC------CCCceeeec--ccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhccCccCCCcc
Q 020745 240 DQDPYFRMTRDVAPRIG------YHKPALIES--SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQVC 311 (322)
Q Consensus 240 DQd~~~~ltrdla~k~~------~~kp~~l~~--~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t~~~~~ 311 (322)
||+||+++|||+|+|+| +++|..+++ ++||+|+|+++|||||.++|+|||+|+|++|++|||++ .|++..+
T Consensus 146 DQ~~h~~l~Rdia~r~n~~~~~~~~~P~~l~~~~~~i~~l~g~~~KMSKS~~~~~I~L~d~~~~i~~KI~~a-~td~~~~ 224 (280)
T cd00806 146 DQDPHLELTRDIARRFNKLYGEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTDSPKEIKKKIMKA-ATDGGRT 224 (280)
T ss_pred ccHHHHHHHHHHHHHhccccccccCCCeeeccCCCccccCCCCCCcccCCCCCCeEEeeCCHHHHHHHHHhc-cCCCCCc
Confidence 99999999999999999 689999998 99999999668999999779999999999999999995 5544445
Q ss_pred ccccCC-CCCCC
Q 020745 312 IFWRTR-KCGIT 322 (322)
Q Consensus 312 ~~~~~~-~~~~~ 322 (322)
+.|+.+ +|+++
T Consensus 225 ~~~~~~~~~~~~ 236 (280)
T cd00806 225 EHRRDGGGPGVS 236 (280)
T ss_pred eecCCCCCCCcC
Confidence 667744 88764
No 7
>TIGR00233 trpS tryptophanyl-tRNA synthetase. This model represents tryptophanyl-tRNA synthetase. Some members of the family have a pfam00458 domain amino-terminal to the region described by this model.
Probab=100.00 E-value=3.2e-52 Score=400.11 Aligned_cols=222 Identities=37% Similarity=0.527 Sum_probs=192.9
Q ss_pred CceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccCC-CHHHHHHHHHHHHHHHHHcCCCCCce
Q 020745 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNL-SVEESQRLARENAKDIIACGFDVTKT 162 (322)
Q Consensus 84 ~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~-~~e~i~~~~~~~~~~iiA~G~dp~kt 162 (322)
+|+++|+|++||| .|||||++++++.+++|++ |+.++|+|||+|+++.++. +.+.++.++++++++|+|||+||+|+
T Consensus 1 ~~~~v~~G~~PTG-~~HlG~~l~~~~~~~~~q~-~~~~~i~IaD~ha~t~~~~~~~~~~~~~~~~~~~~~lA~GlDp~k~ 78 (328)
T TIGR00233 1 KKFRVLTGIQPSG-KMHLGHYLGAIQTKWLQQF-GVELFICIADLHAITVKDNTDPDALRKAREELAADILAVGLDPKKT 78 (328)
T ss_pred CCCEEEEeeCCCc-HhHHHHHHHHHHHHHHHhC-CCCEEEEeecchhhcCCCCCCHHHHHHHHHHHHHHHHHhCcChhhe
Confidence 4689999999999 9999999999988888864 8999999999999886643 77899999999999999999999999
Q ss_pred EEEecccccccccHHHHHHHHcccCHHHHHHhhCCCCC-----ccccccchhhhhcCCCCCCCccccccCCCCccccccc
Q 020745 163 FIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGE-----DHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237 (322)
Q Consensus 163 ~I~~ns~~~~~~~~~~~~~l~k~~t~~~~~~~~g~~~~-----~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~ 237 (322)
+||.||+|. .++..++.+++.+|++++.+..++++. +++|+|+||+|||||+ +.+++ ++||+
T Consensus 79 ~if~qS~~~--e~~el~~~l~~~~t~~~l~r~~~~k~k~~~~~~~~g~l~YP~lqaaDi--------l~~~~---d~vpv 145 (328)
T TIGR00233 79 FIFLQSDYP--EHYELAWLLSCQVTFGELKRMTQFKDKSQAENVPIGLFSYPVLQAADI--------LLYQA---DLVPV 145 (328)
T ss_pred EEEEcCCcH--HHHHHHHHHHccCCHHHHHhccCcchhccCCCCCchhhcchHHHHhhh--------hhcCC---Ceeec
Confidence 999999996 588888899999999999988776544 5999999999999975 45565 58899
Q ss_pred ccChhhHHHHHHHHHHHhC------CCCceeeecccccCCCCC-CCcCCCCCCCCeeecCCCHHHHHHHHhccCccCCCc
Q 020745 238 AIDQDPYFRMTRDVAPRIG------YHKPALIESSFFPALQGE-TGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQV 310 (322)
Q Consensus 238 G~DQd~~~~ltrdla~k~~------~~kp~~l~~~~lp~L~G~-~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t~~~~ 310 (322)
|.||+||++||||+|+|+| +++|..++++++|.|.|. |+|||||.|+|+|||+|+|++|++||++++|++++
T Consensus 146 G~DQ~~h~elaRdia~r~n~~~~~~f~~P~~l~~~~~~~l~gl~~~KMSKS~~~s~I~L~D~~e~I~~KI~~a~td~~~- 224 (328)
T TIGR00233 146 GIDQDQHLELTRDLAERFNKKFKNFFPKPESLISKFFPRLMGLSGKKMSKSDPNSAIFLTDTPKQIKKKIRKAATDGGR- 224 (328)
T ss_pred ccccHHHHHHHHHHHHHhhhhcCcccCCChhhhccccCCCCCCCCCcCCCCCCCCeEeecCCHHHHHHHHHhcCCCCCC-
Confidence 9999999999999999999 678998998876666654 26999999888999999999999999996565555
Q ss_pred cccccCC-CCCC
Q 020745 311 CIFWRTR-KCGI 321 (322)
Q Consensus 311 ~~~~~~~-~~~~ 321 (322)
.+.++++ +||+
T Consensus 225 ~~~~~~~~~~g~ 236 (328)
T TIGR00233 225 VTLFEHREKGGV 236 (328)
T ss_pred CcccCcCCCCCC
Confidence 5557654 7775
No 8
>PRK13354 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.8e-50 Score=394.21 Aligned_cols=230 Identities=23% Similarity=0.278 Sum_probs=198.5
Q ss_pred hhhhcCceeecCCHHHHHHHHHhCCceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEe-------eCcc-cc
Q 020745 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQL-------TDDE-KC 131 (322)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~I-------aD~~-~~ 131 (322)
.|.+||+|++|++++++.+++++++++++|+||+|||++|||||++++++++|||++++ .++++| +||+ +.
T Consensus 8 ~l~~Rg~~~~~~~~~~l~~~~~~~~~~~iy~G~dPT~~sLHlGhlv~l~~l~~lq~~G~-~~~~ligd~ta~igDpsgk~ 86 (410)
T PRK13354 8 QLKWRGAINQETDEEKLRKSLKEGKPLTLYLGFDPTAPSLHIGHLVPLMKLKRFQDAGH-RPVILIGGFTGKIGDPSGKS 86 (410)
T ss_pred HHHHcCCchhcCCHHHHHHHHhcCCCcEEEEcccCCCCCcchhhHHHHHHHHHHHHcCC-eEEEEEcccccccCCCCccc
Confidence 45679999999999999998888899999999999998899999999999999999744 455554 5555 44
Q ss_pred cccC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEecccccccccHHHHH-HHHcccCHHHHHHh------hCCCCCccc
Q 020745 132 MWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMV-KVAKCVTYNKVVGI------FGFTGEDHI 203 (322)
Q Consensus 132 l~r~-~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~~~~~~~~~-~l~k~~t~~~~~~~------~g~~~~~s~ 203 (322)
.+|+ ++.|++++|+.++.+++.+ |+||+++.|++|++|.++..|.+++ ++++++|+++|.++ ++..+++++
T Consensus 87 ~~R~~l~~e~i~~n~~~i~~q~~~-~ld~~k~~i~~ns~w~~~~~~~~~l~~v~~~~tv~~m~~~~~~~~R~~~~~~is~ 165 (410)
T PRK13354 87 KERKLLTDEQVQHNAKTYTEQIFK-LFDFEKTEIVNNSDWLSKLNLIDFLRDYGKHFTVNRMLERDDVKSRLEREQGISF 165 (410)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHH-hcCccceEEEECccccccccHHHHHHHHHhhccHHHHHhchHHHhhhccCCCCch
Confidence 5566 8999999999887777766 8999999999999999888889999 59999999999864 222457899
Q ss_pred cccchhhhhcCCCCCCCccccccCCCCccccc-ccccChhhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCC
Q 020745 204 GKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLI-PCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASD 282 (322)
Q Consensus 204 ~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lv-p~G~DQd~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~ 282 (322)
++|+||+|||||++ +++ .+++|.+ |+|.||++|++++||+|+|+|..+|..++.++|++++| .|||||.
T Consensus 166 ~ef~YpllQa~D~~-----~l~---~~~~~~iq~gG~DQ~~ni~~grdl~~r~~~~~~~~lt~PlL~g~dG--~KMsKS~ 235 (410)
T PRK13354 166 TEFFYPLLQAYDFV-----HLN---RKEDVDLQIGGTDQWGNILMGRDLQRKLEGEEQFGLTMPLLEGADG--TKMGKSA 235 (410)
T ss_pred hhhccHHHHhhhHH-----HHh---ccCCCCEEEecHHHHHHHHHHHHHHHHhCCCCceEeccCCccCCCC--CccCCCC
Confidence 99999999999854 333 2345666 69999999999999999999999998888999999987 5999998
Q ss_pred CCCeeecCCC---HHHHHHHHhc
Q 020745 283 PNSAIYVTDS---AKAIKNKIIL 302 (322)
Q Consensus 283 p~~aI~L~D~---p~~i~~KI~k 302 (322)
+|+|||+|+ |+++++||++
T Consensus 236 -~naI~L~d~~tsp~~i~qki~~ 257 (410)
T PRK13354 236 -GGAIWLDPEKTSPYEFYQFWMN 257 (410)
T ss_pred -CCceeccCCCCCHHHHHHHHHc
Confidence 789999999 9999999998
No 9
>PTZ00126 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=1.7e-49 Score=387.16 Aligned_cols=236 Identities=18% Similarity=0.244 Sum_probs=200.1
Q ss_pred hhhhcCceeecCCHHHHHHHHHhCCceEEEEeeccCCCCcchhhh-HHHHHHHHHHHhCCceEEEEeeCcccccccC--C
Q 020745 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHL-VPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--L 136 (322)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PSg~slHlGhl-i~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~--~ 136 (322)
.++.||...-. ..++|.+++++++++.+|+|++||| .+||||. +..+.+++||++ |+.++|+|||+|+++.++ .
T Consensus 42 ~~i~r~~~e~i-~~eel~~~l~~~~~~~v~~G~~PTG-~lHLG~g~i~~~~~~~lq~~-G~~v~~~IaD~hA~~~~~~g~ 118 (383)
T PTZ00126 42 KLCLSIGEECI-QPEELRELLKLKERPICYDGFEPSG-RMHIAQGILKAINVNKLTKA-GCVFVFWVADWFALLNNKMGG 118 (383)
T ss_pred HHHhcCceeec-CHHHHHHHHhcCCCCEEEEEECCCC-cccccchHhHhHHHHHHHhC-CCeEEEEEccceeecCCCCCC
Confidence 45777865444 4677777788889999999999999 7999994 444456779986 788999999999988754 7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCceEEEecccccc---cccHHHHHHHHcccCHHHHHHh---hCCC--CCccccccch
Q 020745 137 SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG---GAFYKNMVKVAKCVTYNKVVGI---FGFT--GEDHIGKVSF 208 (322)
Q Consensus 137 ~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~---~~~~~~~~~l~k~~t~~~~~~~---~g~~--~~~s~~~~~Y 208 (322)
++++++++++++++.|+|+|+||+++.||.||+|.. ..+|..++++++++|+++|++. +++. ++.++|+|+|
T Consensus 119 ~l~~i~~~~~~~~~~~~A~GlDp~k~~i~~qS~~v~~~~~l~w~~~~~la~~~tl~r~~r~~~~~~r~~~~~~~~g~l~Y 198 (383)
T PTZ00126 119 DLEKIRKVGEYFIEVWKAAGMDMDNVRFLWASEEINKNPNDYWLRVMDIARSFNITRIKRCSQIMGRSEGDEQPCAQILY 198 (383)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCccceEEEECChhhhhhhHHHHHHHHHHhccCCHHHHHhhhhhhccccCCCCCchhhhh
Confidence 899999999999999999999999999999999753 2578999999999999999753 4543 3578999999
Q ss_pred hhhhcCCCCCCCccccccCCCCcccccccccChhhHHHHHHHHHHHhCC-CCceeeecccccCCCCCCCcCCCCCCCCee
Q 020745 209 PPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-HKPALIESSFFPALQGETGKMSASDPNSAI 287 (322)
Q Consensus 209 P~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~~ltrdla~k~~~-~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI 287 (322)
|+|||||+ +.+++ .++|+|.||+||++||||+|+|+|+ ++|+++++++||||+++++|||||.|+++|
T Consensus 199 P~LQaaDi--------l~l~a---divpvG~DQ~~~~~LaRdia~~~~~~~~~~~~~~~~lpgL~dg~~KMSKS~~ns~I 267 (383)
T PTZ00126 199 PCMQCADI--------FYLKA---DICQLGMDQRKVNMLAREYCDKKKIKKKPIILSHHMLPGLLEGQEKMSKSDPNSAI 267 (383)
T ss_pred hHHHhhhh--------hccCC---CEEEeCccHHHHHHHHHHHHHHhCCCCCceeecccccccCCCCCCCCCcCCCCCee
Confidence 99999975 45666 4579999999999999999999995 688888999999997546899999988899
Q ss_pred ecCCCHHHHHHHHhccCccCCC
Q 020745 288 YVTDSAKAIKNKIILLKCADKQ 309 (322)
Q Consensus 288 ~L~D~p~~i~~KI~k~a~t~~~ 309 (322)
||+|+|++|++|||+|+|.++.
T Consensus 268 ~L~Dspe~I~kKI~kA~t~p~~ 289 (383)
T PTZ00126 268 FMEDSEEDVNRKIKKAYCPPGV 289 (383)
T ss_pred cCCCCHHHHHHHHHhCcCCCCC
Confidence 9999999999999996665543
No 10
>PRK12282 tryptophanyl-tRNA synthetase II; Reviewed
Probab=100.00 E-value=5.3e-50 Score=385.18 Aligned_cols=219 Identities=28% Similarity=0.367 Sum_probs=179.1
Q ss_pred eEEEEeeccCCCCcchhhhHHHHHHH-HHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 020745 86 FYLYTGRGPSSEALHLGHLVPFMFTK-YLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (322)
Q Consensus 86 ~~vytG~~PSg~slHlGhli~~~~~~-~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I 164 (322)
.++|+|++||| .|||||++++++.. +||++++ ++|+|||+|+++++..+++++++++++++++|+|+|+||+|++|
T Consensus 3 ~~v~sG~~PTG-~~HLGn~l~~~~~~~~lQ~~~~--~~i~IaD~ha~~~~~~~~~~i~~~~~~~~~~~lA~G~dp~k~~i 79 (333)
T PRK12282 3 PIILTGDRPTG-KLHLGHYVGSLKNRVALQNEHE--QFVLIADQQALTDNAKNPEKIRRNILEVALDYLAVGIDPAKSTI 79 (333)
T ss_pred CEEEEeeCCCC-cchHHHHHHHHHHHHHHHhCCC--EEEEEccchhHhCCCCCHHHHHHHHHHHHHHHHHhCcChhHeEE
Confidence 36999999999 79999999977555 8999865 68889999997765589999999999999999999999999999
Q ss_pred Eeccccccc----ccHHH---HHHHHcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCccccccc
Q 020745 165 FSDFDYVGG----AFYKN---MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237 (322)
Q Consensus 165 ~~ns~~~~~----~~~~~---~~~l~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~ 237 (322)
|.||+|.++ .+|.. +.++.|+.++++....+++.+++++|+++||+||||| |+.+++ |+|||
T Consensus 80 ~~qS~~~e~~~l~~~l~~~~~~~~l~r~~~~k~~~~~~~~~~~~~~g~l~YP~lqaaD--------Il~~~~---d~vpv 148 (333)
T PRK12282 80 FIQSQIPELAELTMYYMNLVTVARLERNPTVKTEIAQKGFGRSIPAGFLTYPVSQAAD--------ITAFKA---TLVPV 148 (333)
T ss_pred EECCcchHHHHHHHHHHhhchHHHHhhchHHHHHHhccCCCCCCcchhhcchHHHHHH--------HHhhCC---CEEEe
Confidence 999999653 22333 3355566666665555666788999999999999997 455665 89999
Q ss_pred ccChhhHHHHHHHHHHHhCC--CCceee-------ecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhccCccCC
Q 020745 238 AIDQDPYFRMTRDVAPRIGY--HKPALI-------ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADK 308 (322)
Q Consensus 238 G~DQd~~~~ltrdla~k~~~--~kp~~l-------~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t~~ 308 (322)
|.||+||++||||+|+|+|. .+|+.+ .+++||+|+| ++|||||+ +|+|||+|+|++|++||++ |+||+
T Consensus 149 G~DQ~~h~~laRdiA~~~n~~~~~~~~~~p~~~~~~~~~i~~L~g-~~KMSKS~-~~~I~L~D~pe~I~kKI~~-A~td~ 225 (333)
T PRK12282 149 GDDQLPMIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDG-KAKMSKSL-GNAIYLSDDADTIKKKVMS-MYTDP 225 (333)
T ss_pred ccccHHHHHHHHHHHHHHhhhcCCccccCchhcccCCCcccCCCC-CCcCCCCC-CCeeeeeCCHHHHHHHHHh-CcCCC
Confidence 99999999999999999993 334322 3679999998 47999999 6899999999999999999 56655
Q ss_pred CccccccC-CCCCCC
Q 020745 309 QVCIFWRT-RKCGIT 322 (322)
Q Consensus 309 ~~~~~~~~-~~~~~~ 322 (322)
.. +.+++ ++|+++
T Consensus 226 ~~-~~~~~~~~~~~~ 239 (333)
T PRK12282 226 NH-IRVEDPGKVEGN 239 (333)
T ss_pred CC-ccCCCCCCCCcC
Confidence 43 55664 488764
No 11
>cd00805 TyrRS_core catalytic core domain of tyrosinyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic core domain. TyrRS is a homodimer which attaches Tyr to the appropriate tRNA. TyrRS is a class I tRNA synthetases, so it aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formationof the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=6.8e-50 Score=374.72 Aligned_cols=206 Identities=24% Similarity=0.277 Sum_probs=187.8
Q ss_pred EEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccC---------CCHHHHHHHHHHHHHHHHHcCC
Q 020745 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGF 157 (322)
Q Consensus 87 ~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~---------~~~e~i~~~~~~~~~~iiA~G~ 157 (322)
++|+||+|||++|||||+++++.++|||++ |+.++|+|||+|+++.++ .+++++++++++++++++|+|+
T Consensus 2 ~iy~G~~PTg~~lHLG~~~~~~~~~~lq~~-g~~~~ilI~D~~a~~~~~~~~~~~r~~~~~~~i~~~~~~~~~~~~a~g~ 80 (269)
T cd00805 2 KVYIGFDPTAPSLHLGHLVPLMKLRDFQQA-GHEVIVLIGDATAMIGDPSGKSEERKLLDLELIRENAKYYKKQLKAILD 80 (269)
T ss_pred eEEEeeCCCCCcccHHHHHHHHHHHHHHHC-CCeEEEEECCCeeecCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHc
Confidence 699999999989999999999999999997 899999999999987644 7999999999999999999999
Q ss_pred C--CCceEEEecccccccccHHHHHHHHcccCHHHHHHhhCC------CCCccccccchhhhhcCCCCCCCccccccCCC
Q 020745 158 D--VTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGF------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD 229 (322)
Q Consensus 158 d--p~kt~I~~ns~~~~~~~~~~~~~l~k~~t~~~~~~~~g~------~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~ 229 (322)
+ |+++.||.|++|.++.+|.+++++++.+++++|+++.++ .+++++|+|+||+|||||+ +.+++
T Consensus 81 ~~~p~k~~i~~~s~~~~~l~~~~~l~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~~~YP~lQaaDi--------~~l~~ 152 (269)
T cd00805 81 FIPPEKAKFVNNSDWLLSLYTLDFLRLGKHFTVNRMLRRDAVKVRLEEEEGISFSEFIYPLLQAYDF--------VYLDV 152 (269)
T ss_pred cCCCcceEEEEchHhhccCCHHHHHHHHhhCcHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHhhH--------HHHhC
Confidence 6 999999999999988899999999999999999987643 3579999999999999975 44554
Q ss_pred CcccccccccChhhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCCe-eecCCCHHHHHHHHhccCccC
Q 020745 230 HLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA-IYVTDSAKAIKNKIILLKCAD 307 (322)
Q Consensus 230 ~~~~lvp~G~DQd~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~a-I~L~D~p~~i~~KI~k~a~t~ 307 (322)
|++|+|.||+||++++||+|+|+++.+|..+++++||+|+| +|||||.+++. |++.|+|++|++||++ ++++
T Consensus 153 ---~l~~~G~DQ~~~i~~~rd~a~r~~~~~~~~l~~~ll~~l~G--~KMSKS~~~~~~i~l~dsp~~i~~Ki~~-a~~~ 225 (269)
T cd00805 153 ---DLQLGGSDQRGNITLGRDLIRKLGYKKVVGLTTPLLTGLDG--GKMSKSEGNAIWDPVLDSPYDVYQKIRN-AFDP 225 (269)
T ss_pred ---CeeEecHHHHHHHHHHHHHHHHhCCCCcEEEeeccccCCCC--CcccCCCCCcccccCCCCHHHHHHHHHc-CCcH
Confidence 88999999999999999999999999999999999999998 69999996555 6999999999999999 5555
No 12
>PRK00927 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.5e-49 Score=382.56 Aligned_cols=217 Identities=26% Similarity=0.337 Sum_probs=177.3
Q ss_pred EEEEeeccCCCCcchhhhHHHHHHHH--HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 020745 87 YLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (322)
Q Consensus 87 ~vytG~~PSg~slHlGhli~~~~~~~--lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I 164 (322)
.+|+|++||| .|||||+++++ .+| ||++ +.++++|||+|+++++ .+++++++++++++++|+|||+||+|+.|
T Consensus 3 ~v~~G~~PTG-~lHLG~~~g~~-~~~~~lQ~~--~~~~~~IaD~ha~t~~-~~~~~i~~~~~~~~~~~lA~GlDp~k~~i 77 (333)
T PRK00927 3 RVLSGIQPTG-KLHLGNYLGAI-KNWVELQDE--YECFFCIADLHALTVP-QDPEELRENTRELAADYLACGIDPEKSTI 77 (333)
T ss_pred EEEEeeCCCc-cchHHhHHHHH-HHHHHHHhc--CCeEEEEecHHHHhCC-CCHHHHHHHHHHHHHHHHeEccChhheEE
Confidence 6999999999 69999999875 455 9996 5678889999997765 69999999999999999999999999999
Q ss_pred Eeccccccc--ccHH-----HHHHHHcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCccccccc
Q 020745 165 FSDFDYVGG--AFYK-----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237 (322)
Q Consensus 165 ~~ns~~~~~--~~~~-----~~~~l~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~ 237 (322)
|.||+|.++ .+|. .+.++.|+.++++.... +.+++++|+|+||+|||||+ +.+++ |+||+
T Consensus 78 f~qS~~~~~~el~~~l~~~~~~~~l~r~~~~k~~~~~--~~~~~~~g~~~YP~lQaaDi--------l~~~~---divpv 144 (333)
T PRK00927 78 FVQSHVPEHAELAWILNCITPLGELERMTQFKDKSAK--QKENVSAGLFTYPVLMAADI--------LLYKA---DLVPV 144 (333)
T ss_pred EEeCCCchhHHHHHHHHhhhhHHHHHhhhhHHHHHhc--cCCCCCcHhhhcHHHHHHHH--------HhcCC---CEEee
Confidence 999999764 1222 23455555555554322 24688999999999999974 45555 89999
Q ss_pred ccChhhHHHHHHHHHHHhCC------CCceeeec---ccccCCCCCCCcCCCCCCC--CeeecCCCHHHHHHHHhccCcc
Q 020745 238 AIDQDPYFRMTRDVAPRIGY------HKPALIES---SFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKIILLKCA 306 (322)
Q Consensus 238 G~DQd~~~~ltrdla~k~~~------~kp~~l~~---~~lp~L~G~~~KMSkS~p~--~aI~L~D~p~~i~~KI~k~a~t 306 (322)
|.||+||++||||+|+|+|. ++|..+++ ++||||+|+++|||||.++ |+|||+|+|++|++||++ |+|
T Consensus 145 G~DQ~~h~elaRdia~~~n~~~~~~f~~P~~i~~~~~~~l~gL~g~~~KMSKS~~~~~~~I~l~D~~~~I~~KI~~-a~t 223 (333)
T PRK00927 145 GEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPNDNNTINLLDDPKTIAKKIKK-AVT 223 (333)
T ss_pred ccchHHHHHHHHHHHHHhhhhccccCCCChhhhccccccccCCCCCCCCCCCCCCCCCCeEEeeCCHHHHHHHHHh-CCC
Confidence 99999999999999999985 47776663 7899999976799999975 999999999999999999 677
Q ss_pred CCCcc--ccccCC-CCCCC
Q 020745 307 DKQVC--IFWRTR-KCGIT 322 (322)
Q Consensus 307 ~~~~~--~~~~~~-~~~~~ 322 (322)
|+..+ +.++++ +|+++
T Consensus 224 d~~~~~~~~~~~~~~p~~~ 242 (333)
T PRK00927 224 DSERLREIRYDLPNKPEVS 242 (333)
T ss_pred CCCcccccccCCCCCCccc
Confidence 76653 445644 78764
No 13
>PRK05912 tyrosyl-tRNA synthetase; Validated
Probab=100.00 E-value=5.2e-49 Score=387.61 Aligned_cols=230 Identities=21% Similarity=0.253 Sum_probs=196.0
Q ss_pred hhhhhcCceeecCCHHHHHHHHHhCCceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccc-------
Q 020745 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKC------- 131 (322)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~------- 131 (322)
..|.+||++++|+|++++++.++ ++++++|+||+|||++|||||+++++.++|||++ |+.++++|||+|+.
T Consensus 8 ~~l~~Rg~~~~~~~~~~l~~~l~-~~~~~vy~G~dPTg~slHlGhlv~l~~l~~lQ~~-G~~~~~ligd~ta~igDpsgk 85 (408)
T PRK05912 8 EELKERGLIEQITDEEELEEKLA-KEPLRIYLGFDPTAPSLHLGHLVPLLKLRRFQDA-GHKPIALIGGFTGMIGDPSGK 85 (408)
T ss_pred HHHHhCCCeeecCCHHHHHHHhh-CCCCEEEEeecCCCCCccHHhHHHHHHHHHHHHC-CCcEEEEEcCceeEcCCCCCC
Confidence 35667999999999999999988 5899999999999988999999999999999997 55556666555443
Q ss_pred -cccC-CCHHHHHHHHHHHHHHHHHcCCCCCc--eEEEecccccccccHHHHHH-HHcccCHHHHHHhh------CCCCC
Q 020745 132 -MWKN-LSVEESQRLARENAKDIIACGFDVTK--TFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIF------GFTGE 200 (322)
Q Consensus 132 -l~r~-~~~e~i~~~~~~~~~~iiA~G~dp~k--t~I~~ns~~~~~~~~~~~~~-l~k~~t~~~~~~~~------g~~~~ 200 (322)
..|. ++.+++++|+.++ ...+++|+||++ +.|++|++|.++..|..+++ +++++|+++|.++. +...+
T Consensus 86 ~~~r~~l~~e~i~~n~~~i-~~ql~~~ld~~k~~~~i~~nsd~~~~~~~~~~l~~v~~~~~v~~m~~~~~~k~r~~~~~~ 164 (408)
T PRK05912 86 SETRKLLTREQVAENAETI-KEQLFKFLDFEKDGAEIVNNSDWLGKLNAIDFLRDLGKHFTVNRMLERDDFKKRLREGQG 164 (408)
T ss_pred chhhccCCHHHHHHHHHHH-HHHHHHhcCcCcCcEEEEECCCcCCcccHHHHHHHHhhhccHHHHhhcchHHHHhccCCC
Confidence 3344 7899999998654 667799999998 99999999998888888888 99999999998653 22358
Q ss_pred ccccccchhhhhcCCCCCCCccccccCCCCccccc-ccccChhhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCC
Q 020745 201 DHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLI-PCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMS 279 (322)
Q Consensus 201 ~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lv-p~G~DQd~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMS 279 (322)
+|+|+|+||+|||||++ +++ .+++|.+ |+|.||++|++++||+|+|+|..++..++.++||+++| +|||
T Consensus 165 is~~ef~Yp~LQa~D~l-----~l~---~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~l~~plL~~~~G--~KMs 234 (408)
T PRK05912 165 ISFTEFLYPLLQGYDFV-----ALN---KRYGCDLQLGGSDQWGNILSGRDLQRRYGGKPQFGLTMPLLTGLDG--KKMG 234 (408)
T ss_pred CchhhhhhHHHHHhhHH-----HHh---ccCCCCEEeccHHHHHHHHHHHHHHHHhCCCCeEEEecCCcCCCCC--Cccc
Confidence 99999999999999853 222 2455655 67999999999999999999987888888888888887 8999
Q ss_pred CCCCCCeeecCC---CHHHHHHHHhc
Q 020745 280 ASDPNSAIYVTD---SAKAIKNKIIL 302 (322)
Q Consensus 280 kS~p~~aI~L~D---~p~~i~~KI~k 302 (322)
||. +|+|||+| +|+++++||++
T Consensus 235 KS~-~naI~L~d~~tsp~~i~qki~~ 259 (408)
T PRK05912 235 KSE-GNAVWLDEEKTSPYEMYQKWMN 259 (408)
T ss_pred CCC-CCceeCCCCCCCHHHHHHHHhc
Confidence 998 89999999 99999999998
No 14
>PLN02886 aminoacyl-tRNA ligase
Probab=100.00 E-value=4.2e-49 Score=383.05 Aligned_cols=219 Identities=21% Similarity=0.294 Sum_probs=186.6
Q ss_pred eEEEEeeccCCCCcchhhhHHHHHHHH--HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 020745 86 FYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (322)
Q Consensus 86 ~~vytG~~PSg~slHlGhli~~~~~~~--lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~ 163 (322)
..+|+|++||| .|||||+++.+ .+| ||+ ++.++|+|||+|+++.+ .+++++++++++++++|+|||+||+|+.
T Consensus 47 ~~v~sGiqPSG-~lHLGnylGai-~~~v~lQ~--~~~~~~~IADlHAlt~~-~~~~~lr~~~~~~~a~~lA~GlDP~ks~ 121 (389)
T PLN02886 47 KRVVSGVQPTG-SIHLGNYLGAI-KNWVALQE--TYDTFFCVVDLHAITLP-HDPRELGKATRSTAAIYLACGIDPSKAS 121 (389)
T ss_pred CeEEEEECCCC-ccHHHHHHHHH-HHHHHHhc--cCCEEEEEecHHHhhCC-CCHHHHHHHHHHHHHHHHHcCcCccceE
Confidence 46999999999 89999999875 444 998 45678999999997754 7999999999999999999999999999
Q ss_pred EEeccccccc--ccHHH-----HHHHHcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcccccc
Q 020745 164 IFSDFDYVGG--AFYKN-----MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIP 236 (322)
Q Consensus 164 I~~ns~~~~~--~~~~~-----~~~l~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp 236 (322)
||.||++.++ .+|.. +.++.|+++++++.+..+ .+++++|.|+||+||||| |+.+++ ++||
T Consensus 122 if~QS~v~e~~eL~wil~~~t~~g~L~R~~q~K~k~~~~~-~~~~~~gll~YPvLqAAD--------ILl~~a---~~VP 189 (389)
T PLN02886 122 VFVQSHVPAHAELMWLLSCSTPIGWLNKMIQFKEKSRKAG-DENVGVGLLTYPVLMASD--------ILLYQA---DLVP 189 (389)
T ss_pred EEEeCCCchhHHHHHHHHhhCcHHHHHhcchHHHHHHhcC-CCCCChHhhhChHHHHhh--------hhhcCC---CeEE
Confidence 9999998764 33332 348899999999877665 357899999999999996 556666 6899
Q ss_pred cccChhhHHHHHHHHHHHhCC------------------CCceeee---cccccCCCCCCCcCCCCCCC--CeeecCCCH
Q 020745 237 CAIDQDPYFRMTRDVAPRIGY------------------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSA 293 (322)
Q Consensus 237 ~G~DQd~~~~ltrdla~k~~~------------------~kp~~l~---~~~lp~L~G~~~KMSkS~p~--~aI~L~D~p 293 (322)
||.||+||++||||+|+|+|. +.|..++ +..||+|+|+.+|||||.|+ |+|+|+|+|
T Consensus 190 VG~DQ~qH~eLtRdiA~rfN~~y~~~~~~~~~~~~~~~f~~P~~l~~~~~~ri~~L~~g~~KMSKS~p~~~s~I~L~Ds~ 269 (389)
T PLN02886 190 VGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLTDGTSKMSKSAPSDQSRINLLDPP 269 (389)
T ss_pred EccchHHHHHHHHHHHHHHhhhccccccccccccCCceecCCeeccCcccceeeeCCCCCCcCCCCCCCCCCeEEecCCH
Confidence 999999999999999999985 2455554 45799998866799999974 899999999
Q ss_pred HHHHHHHhccCccCCCcccccc-CCCCCCC
Q 020745 294 KAIKNKIILLKCADKQVCIFWR-TRKCGIT 322 (322)
Q Consensus 294 ~~i~~KI~k~a~t~~~~~~~~~-~~~~~~~ 322 (322)
++|++||++ |.||++.++.++ |++|+++
T Consensus 270 e~I~kKI~~-a~TD~~~~i~~~~p~~p~v~ 298 (389)
T PLN02886 270 DVIANKIKR-CKTDSFPGLEFDNPERPECN 298 (389)
T ss_pred HHHHHHHhc-CCCCCCCCccCCCCCCcccc
Confidence 999999999 999999888887 5699875
No 15
>PRK12556 tryptophanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=8.9e-49 Score=376.39 Aligned_cols=218 Identities=17% Similarity=0.224 Sum_probs=179.1
Q ss_pred eEEEEeeccCCCCcchhhhHHHHHH-HHHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 020745 86 FYLYTGRGPSSEALHLGHLVPFMFT-KYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (322)
Q Consensus 86 ~~vytG~~PSg~slHlGhli~~~~~-~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I 164 (322)
.++|+|++||| .|||||+++++.. .++|+.+|+.++++|||+|+. +...+++++++++++++++|+|||+||+|++|
T Consensus 4 ~~v~sGiqPTG-~~HLGnylga~k~~~~lq~~~~~~~~~~IADlHal-t~~~~~~~l~~~~~~~~~~~lA~GlDP~k~~i 81 (332)
T PRK12556 4 KIMLTGIKPTG-YPHLGNYIGAIKPALQMAKNYEGKALYFIADYHAL-NAVHDPEQFRSYTREVAATWLSLGLDPEDVIF 81 (332)
T ss_pred CEEEEEECCCC-cchHHHHHHHHHHHHHHHHhcCCeEEEEEechhhc-cCCCCHHHHHHHHHHHHHHHhheeecccceEE
Confidence 47999999999 8999999998653 468877788899999999994 43479999999999999999999999999999
Q ss_pred Eecccccccc---cHH----HHHHHHcccCHHHHHHh-----hCCCCCccccccchhhhhcCCCCCCCccccccCCCCcc
Q 020745 165 FSDFDYVGGA---FYK----NMVKVAKCVTYNKVVGI-----FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLR 232 (322)
Q Consensus 165 ~~ns~~~~~~---~~~----~~~~l~k~~t~~~~~~~-----~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~ 232 (322)
|.||++.++. |.. .+.++.|+.++++.... .++.+++++|+++||+|||||+ +.+++
T Consensus 82 f~qS~v~~~~eL~~il~~~t~~g~L~R~~~~K~k~~~~~~~~~~~~~~~~~gll~YPvLqAADI--------l~~~~--- 150 (332)
T PRK12556 82 YRQSDVPEIFELAWILSCLTPKGLMNRAHAYKAKVDQNKEAGLDLDAGVNMGLYTYPILMAADI--------LLFQA--- 150 (332)
T ss_pred EECCCchHHHHHHHHHHccchHHHHHhccHHHHHHhhhhhhccccCCCCcchhhhchHHHhhhh--------hhccC---
Confidence 9999987541 111 13356666666655432 1345578999999999999974 45665
Q ss_pred cccccccChhhHHHHHHHHHHHhC------CCCceee---ecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhcc
Q 020745 233 CLIPCAIDQDPYFRMTRDVAPRIG------YHKPALI---ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILL 303 (322)
Q Consensus 233 ~lvp~G~DQd~~~~ltrdla~k~~------~~kp~~l---~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k~ 303 (322)
|+||||.||+||++||||+|+|+| +++|..+ +++++|||+| +|||||. +|+|+|+|+|++|++||++
T Consensus 151 d~VpvG~DQ~qhleLtRdiA~rfn~~yg~~f~~P~~~~~~~~~~l~gLdg--~KMSKS~-~n~I~L~D~p~~I~kKI~k- 226 (332)
T PRK12556 151 THVPVGKDQIQHIEIARDIATYFNHTFGDTFTLPEYVIQEEGAILPGLDG--RKMSKSY-GNVIPLFAEQEKLRKLIFK- 226 (332)
T ss_pred CEEEeccccHHHHHHHHHHHHHHHHhccccCCCceeccccccccccCCCC--CCCCCCC-CCcccccCCHHHHHHHHHH-
Confidence 899999999999999999999999 4678666 6899999998 6999999 6899999999999999999
Q ss_pred CccCCCccccccCCCCCCC
Q 020745 304 KCADKQVCIFWRTRKCGIT 322 (322)
Q Consensus 304 a~t~~~~~~~~~~~~~~~~ 322 (322)
|.||+... -.+++|+++
T Consensus 227 a~Td~~~~--~~~~~p~~~ 243 (332)
T PRK12556 227 IKTDSSLP--NEPKDPETS 243 (332)
T ss_pred hccCCCcc--cCCCCcchh
Confidence 89998652 124577653
No 16
>PF00579 tRNA-synt_1b: tRNA synthetases class I (W and Y); InterPro: IPR002305 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2JAN_A 3P0J_B 3P0I_B 3P0H_B 1YID_C 2A4M_C 1YIA_C 1YI8_C 2EL7_A 3PRH_A ....
Probab=100.00 E-value=4.4e-49 Score=372.75 Aligned_cols=214 Identities=34% Similarity=0.510 Sum_probs=182.9
Q ss_pred hCCceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccC--CCHHHHHHHHHHHHHH--HHHcCC
Q 020745 82 KGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKD--IIACGF 157 (322)
Q Consensus 82 ~~~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~--~~~e~i~~~~~~~~~~--iiA~G~ 157 (322)
+++++++|+||+||| .|||||+++++.++|||++ |+.++|+|||+|+++.++ .+++.++.++.+++.. ++|+|+
T Consensus 2 ~~~~~~~y~G~~PTg-~lHlG~l~~~~~~~~lq~~-g~~~~i~iaD~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~g~ 79 (292)
T PF00579_consen 2 ENKPFRVYTGIDPTG-DLHLGHLVPIMKLIWLQKA-GFKVIILIADLHALLGDPSKGDERKIRSRAEYNINDKAILALGL 79 (292)
T ss_dssp THSSEEEEEEEESSS-S-BHHHHHHHHHHHHHHHT-TSEEEEEEEHHHHHHTTTTGSSHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCcEEEEeECCCC-cccchHHHHHHHHHHHHhc-CCccceEecchhhcccCcccccHHHHHHHHHHHHHHHHHHHhcc
Confidence 457999999999999 5999999999999999995 999999999999988775 4799999999999988 999999
Q ss_pred CCCceEEEecccccccc-cHHHHHHHHcccCHHHHHHh------hCCCCCccccccchhhhhcCCCCCCCccccccCCCC
Q 020745 158 DVTKTFIFSDFDYVGGA-FYKNMVKVAKCVTYNKVVGI------FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDH 230 (322)
Q Consensus 158 dp~kt~I~~ns~~~~~~-~~~~~~~l~k~~t~~~~~~~------~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~ 230 (322)
||+++.|+.||+|..+. ++..+..+++..++++|.++ ++.++++++|+|+||+||||| ++.+++
T Consensus 80 d~~k~~i~~~s~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Yp~lQaaD--------~~~l~~- 150 (292)
T PF00579_consen 80 DPEKTEIFRQSDWPEHMELWWFLSDVARLFSLNRMLRFKDVKKRLKNGEGISLGEFSYPLLQAAD--------ILLLKA- 150 (292)
T ss_dssp HTTTEEEEEGHHHHCHHHHHHHHHHHHBHHHHHHHHHHHHHHHHHSSTTTSBHHHHHHHHHHHHH--------HHHTTH-
T ss_pred CccceEEEeCCCcccccchhhhhcccccccchhhhhhhcccccccccccCcceeeEEcccccccc--------eeeecc-
Confidence 99999999999998653 44445557777777666655 344468999999999999996 455665
Q ss_pred cccccccccChhhHHHHHHHHHHHhCCC----CceeeecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhccCcc
Q 020745 231 LRCLIPCAIDQDPYFRMTRDVAPRIGYH----KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCA 306 (322)
Q Consensus 231 ~~~lvp~G~DQd~~~~ltrdla~k~~~~----kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t 306 (322)
.++|+|.||++|++++||+|+|+|.. +|+.++++++|+|+|. +|||||.++++|||+|++++|++||++++|.
T Consensus 151 --~~~~~G~DQ~~~~~l~rd~a~k~~~~~~~~~p~~l~~~~l~~l~G~-~KMSKS~~ns~I~L~d~~~~i~~Ki~~a~~~ 227 (292)
T PF00579_consen 151 --DLVPGGIDQRGHIELARDLARKFNYKEIFPKPAGLTSPLLPGLDGQ-KKMSKSDPNSAIFLDDSPEEIRKKIKKAFCD 227 (292)
T ss_dssp --SEEEEEGGGHHHHHHHHHHHHHHTHHSTSSS-EEEEETCBBSTTSS-SBTTTTTTGGS-BTTTTHHHHHHHHHHSHTS
T ss_pred --ccccccchHHHHHHHHHHHHhhhcccccccCchheeeccccccCCc-cccCccCCccEEEEeccchhHHHHHHHHhhC
Confidence 47899999999999999999999998 9999999999999983 4999999877999999999999999995555
Q ss_pred CCC
Q 020745 307 DKQ 309 (322)
Q Consensus 307 ~~~ 309 (322)
+++
T Consensus 228 ~~~ 230 (292)
T PF00579_consen 228 PDR 230 (292)
T ss_dssp TTS
T ss_pred CCc
Confidence 554
No 17
>cd00395 Tyr_Trp_RS_core catalytic core domain of tyrosinyl-tRNA and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS) catalytic core domain. These enzymes attach Tyr or Trp, respectively, to the appropriate tRNA. These class I enzymes are homodimers, which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the class I characteristic HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=100.00 E-value=1.5e-48 Score=366.19 Aligned_cols=206 Identities=21% Similarity=0.278 Sum_probs=179.7
Q ss_pred EEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccC---------CCHHHHHHHHHHHHHHHHHcCC
Q 020745 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN---------LSVEESQRLARENAKDIIACGF 157 (322)
Q Consensus 87 ~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~---------~~~e~i~~~~~~~~~~iiA~G~ 157 (322)
.+|+||+|||++|||||+++++.++|||++ |+.++++|||.|+.+..+ ++.+++++|+.+++++++|+|+
T Consensus 1 ~iy~G~~PTg~~lHlGh~~~l~~~~~lq~~-g~~~~~~I~d~~a~~~d~sg~~~~r~~~~~~~i~~n~~~~~~~~~a~g~ 79 (273)
T cd00395 1 TLYCGIDPTADSLHIGHLIGLLTFRRFQHA-GHRPIFLIGGQTGIIGDPSGKKSERTLNDPEEVRQNIRRIAAQYLAVGI 79 (273)
T ss_pred CeEEeEcCCCCCccHHHHHHHHHHHHHHHC-CCCEEEEEecCceeeCCCCCccccccCCCHHHHHHHHHHHHHHHHHhcC
Confidence 389999999988999999999999999995 778899999999876532 2899999999999999999999
Q ss_pred C--CCceEEEeccccccc-ccHHHHHHHHcccCHHHHHHhhCCC----CCccccccchhhhhcCCCCCCCccccccCCCC
Q 020745 158 D--VTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIFGFT----GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDH 230 (322)
Q Consensus 158 d--p~kt~I~~ns~~~~~-~~~~~~~~l~k~~t~~~~~~~~g~~----~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~ 230 (322)
| |+++.||+|++|.+. .++..+..+++++|+++|+++.+++ +++++|+|+||+|||||+| .++++
T Consensus 80 d~~p~k~~i~~ns~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~k~r~~~~~~~~~~~Yp~lQaaD~l--------~l~~~ 151 (273)
T cd00395 80 FEDPTQATLFNNSDWPGPLAHIQFLRDLGKHVYVNYMERKTSFQSRSEEGISATEFTYPPLQAADFL--------LLNTT 151 (273)
T ss_pred cCCCcceEEEEccccCCcccHHHHHHHHHccCcHHHHHhChHHHHHhcCCCCchhhhhHHHHHHHHH--------HHhcc
Confidence 9 999999999999865 4555555699999999999987664 4899999999999999754 34445
Q ss_pred ccc-ccccccChhhHHHHHHHHHHHhC-CCCceeeecccccCCCCCCCcCCCCCCCCeee---cCCCHHHHHHHHhccC
Q 020745 231 LRC-LIPCAIDQDPYFRMTRDVAPRIG-YHKPALIESSFFPALQGETGKMSASDPNSAIY---VTDSAKAIKNKIILLK 304 (322)
Q Consensus 231 ~~~-lvp~G~DQd~~~~ltrdla~k~~-~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~---L~D~p~~i~~KI~k~a 304 (322)
.+| ++|+|.||+||++++||+|+|+| .++|..++.++||+|+| .|||||. +|+|| +.|+|++|++||+++.
T Consensus 152 ~~~~~vp~G~DQ~~~i~l~rdla~r~n~~~~p~~l~~p~l~~l~G--~KMSKS~-~~~i~l~~~~dsp~~i~~ki~~a~ 227 (273)
T cd00395 152 EGCDIQPGGSDQWGNITLGRELARRFNGFTIAEGLTIPLVTKLDG--PKFGKSE-SGPKWLDTEKTSPYEFYQFWINAV 227 (273)
T ss_pred cCCcEEEecHHHHHHHHHHHHHHHHhCCCCCCeEEeeccccCCCC--CcCCCCC-CCCccccccCCCHHHHHHHHHccc
Confidence 667 88999999999999999999997 57898999999999998 5999998 56766 4899999999999943
No 18
>PRK12283 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1.7e-46 Score=364.58 Aligned_cols=219 Identities=20% Similarity=0.226 Sum_probs=179.3
Q ss_pred EEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEe
Q 020745 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFS 166 (322)
Q Consensus 87 ~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ 166 (322)
.+|+|++||| .|||||+++++ .+|.+-..+..++++|||+|+++++..+++++++++++++++|+|||+||+|+.||.
T Consensus 4 ~v~sGiqPSG-~~HLGnylG~i-k~wv~lq~~~~~~~~IADlHAlt~~~~d~~~ir~~~~~~~a~~lA~GlDP~k~~if~ 81 (398)
T PRK12283 4 RVLSGMRPTG-RLHLGHYHGVL-KNWVKLQHEYECFFFVADWHALTTHYETPEVIEKNVWDMVIDWLAAGVDPAQATLFI 81 (398)
T ss_pred EEEEEeCCCC-cchHHHHHHHH-HHHHHHhcCCcEEEEeecHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccceEEEE
Confidence 5999999999 89999999975 678543235678899999999876657999999999999999999999999999999
Q ss_pred ccccccc--ccHH-----HHHHHHcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCccccccccc
Q 020745 167 DFDYVGG--AFYK-----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI 239 (322)
Q Consensus 167 ns~~~~~--~~~~-----~~~~l~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~ 239 (322)
||+++++ .+|. .+.++.|++++++...+.+..++.++|.++||+||||| |+.+++ ++||||.
T Consensus 82 QS~v~eh~eL~wil~~~t~~~~L~R~~~~Kdk~~~~~~~~~~~~Gll~YPvLqAAD--------ILl~~a---~iVPVG~ 150 (398)
T PRK12283 82 QSKVPEHAELHLLLSMITPLGWLERVPTYKDQQEKLKEKDLSTYGFLGYPLLQSAD--------ILIYRA---GLVPVGE 150 (398)
T ss_pred CCCchHHHHHHHHHHhhccHHHHHhhhHHHHHHhhhccccCCcchhhcCcHHHHHH--------HHhcCC---CEeeecc
Confidence 9999754 1221 13355666666555443222457899999999999996 556666 7899999
Q ss_pred ChhhHHHHHHHHHHHhCCC-------------------------------------------------------------
Q 020745 240 DQDPYFRMTRDVAPRIGYH------------------------------------------------------------- 258 (322)
Q Consensus 240 DQd~~~~ltrdla~k~~~~------------------------------------------------------------- 258 (322)
||+||++||||+|+|+|..
T Consensus 151 DQ~qHleLaRdIA~rfN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (398)
T PRK12283 151 DQVPHVEMTREIARRFNHLYGREPGFEEKAEAAIKKLGKKRAKLYHELRNAYQEEGDDEALEQARALLQEQQNLSMGDRE 230 (398)
T ss_pred ccHHHHHHHHHHHHHHHHhcCccccchhHHHHHhhccchhhHHHHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhhhhhc
Confidence 9999999999999996642
Q ss_pred ---------------Ccee--eecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhccCccCCCccccccCCCCCC
Q 020745 259 ---------------KPAL--IESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQVCIFWRTRKCGI 321 (322)
Q Consensus 259 ---------------kp~~--l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t~~~~~~~~~~~~~~~ 321 (322)
.|.. .++++||+|+| +|||||. +|+|+|+|+|++|++||++ |+||......++|++|++
T Consensus 231 ~~~~~~~~~~~~~~~~P~~~~~~~~~I~gLdg--~KMSKS~-~n~I~L~Ds~~~I~kKI~~-a~TDs~~~~~~~~g~Pe~ 306 (398)
T PRK12283 231 RLFGYLEGAGKIILPEPQALLTEASKMPGLDG--QKMSKSY-GNTIGLREDPESVTKKIRT-MPTDPARVRRTDPGDPEK 306 (398)
T ss_pred cccccccccCCcccCCCcccccCCCcccCCCC--CcCCCCC-CCeeeCcCCHHHHHHHHHh-CCCCCcccccCCCCCCCc
Confidence 2332 24689999987 7999997 7899999999999999999 899988778888999987
Q ss_pred C
Q 020745 322 T 322 (322)
Q Consensus 322 ~ 322 (322)
|
T Consensus 307 ~ 307 (398)
T PRK12283 307 C 307 (398)
T ss_pred C
Confidence 5
No 19
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=100.00 E-value=6.1e-46 Score=382.10 Aligned_cols=235 Identities=20% Similarity=0.259 Sum_probs=194.9
Q ss_pred hhhhcCceeecCCHHHHHHHHHhCCceEEEEeeccCCCCcchhhh-HHHHHHHHHHHhCCceEEEEeeCcccccccC--C
Q 020745 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHL-VPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--L 136 (322)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PSg~slHlGhl-i~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~--~ 136 (322)
.+++|+.-... ..++|.+++++|+++++|+|++||| .|||||+ +..+....++++ |+.++++|||+|++++.+ .
T Consensus 8 ~ll~r~~~Evi-~~eeL~~ll~~~~~~rv~sGi~PTG-~lHLGng~~~aik~~~~~q~-g~~~~~lIAD~HAlt~~~~~~ 84 (682)
T PTZ00348 8 KLLRSVGEECI-QESELRNLIEKKPLIRCYDGFEPSG-RMHIAQGIFKAVNVNKCTQA-GCEFVFWVADWFALMNDKVGG 84 (682)
T ss_pred HHHhcCceeec-CHHHHHHHHhcCCCCEEEEeeCCCC-cCeeccHHHHHHHHHHHHhC-CCeEEEEEcchhhhcCCCCCC
Confidence 35667754333 5677777788888999999999999 7999994 444433334544 788999999999987544 5
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc-cc--ccHHHHHHHHcccCHHHHHHh---hCCCC-Cccccccchh
Q 020745 137 SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-GG--AFYKNMVKVAKCVTYNKVVGI---FGFTG-EDHIGKVSFP 209 (322)
Q Consensus 137 ~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~-~~--~~~~~~~~l~k~~t~~~~~~~---~g~~~-~~s~~~~~YP 209 (322)
++++++.+++++++.|+|+|+||+|+.||.||+|. ++ .+|..++++++++|++++++. +|+.+ ++++|+++||
T Consensus 85 ~l~~i~~~~~~~~~~~lA~GlDpeK~~~~~qSd~i~e~~el~w~lv~~v~~l~t~~q~K~~~~~~g~~~~~i~~gll~YP 164 (682)
T PTZ00348 85 ELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITNHANTYWRTVLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYP 164 (682)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCccceEEEECcHhhhhhhHHHHHHHHHHHHHhhHHHHHHHHHhhcccCCCCchHHHhhh
Confidence 89999988899999999999999999888899854 33 578889999999999999885 45544 5899999999
Q ss_pred hhhcCCCCCCCccccccCCCCcccccccccChhhHHHHHHHHHHHhCC-CCceeeecccccCCCCCCCcCCCCCCCCeee
Q 020745 210 PVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY-HKPALIESSFFPALQGETGKMSASDPNSAIY 288 (322)
Q Consensus 210 ~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~~ltrdla~k~~~-~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~ 288 (322)
+|||||+ +.+++ .+||+|.||+||++||||+|+++|. ++|+++++++||||+|+++|||||.|+|+||
T Consensus 165 vLQAADI--------l~l~a---divpvG~DQ~qh~eLaRdia~~~g~~~kpvil~~~~LpGL~gg~~KMSKS~p~naI~ 233 (682)
T PTZ00348 165 LMQCADI--------FFLKA---DICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIF 233 (682)
T ss_pred HHHhhcc--------cccCC---CEEEeCccHHHHHHHHHHHHHHhCCCCCceecccccCcCCCCCCCcCCCCCCCCeec
Confidence 9999975 45566 4679999999999999999999995 5788888999999997568999999989999
Q ss_pred cCCCHHHHHHHHhccCccCC
Q 020745 289 VTDSAKAIKNKIILLKCADK 308 (322)
Q Consensus 289 L~D~p~~i~~KI~k~a~t~~ 308 (322)
|+|+|++|++||++++|++.
T Consensus 234 L~Dspe~I~kKI~kA~td~~ 253 (682)
T PTZ00348 234 MEDTEEDVARKIRQAYCPRV 253 (682)
T ss_pred ccCCHHHHHHHHHhCCCCCC
Confidence 99999999999999555543
No 20
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=100.00 E-value=4.8e-46 Score=363.25 Aligned_cols=233 Identities=24% Similarity=0.263 Sum_probs=197.3
Q ss_pred hhhhhcCceeecCCHHHHHHHHHhCCceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccC---
Q 020745 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--- 135 (322)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~--- 135 (322)
..+.+||++..+++.+.+.+.+++ ++++|+||+|||++|||||+++++.+++||++ |+.++++|||+|+.+.++
T Consensus 6 ~~l~~rg~~~~~t~~~~l~~ll~~--~~~vy~G~dPTg~~lHlGh~v~l~~l~~lq~~-G~~~~iligd~ta~igdpsg~ 82 (377)
T TIGR00234 6 LLLKKRGLEVQVPEEEELLKLLER--KIKLYVGFDPTAPSLHLGHLVPLLKLRDFQQA-GHEVIVLLGDATALIGDPSGK 82 (377)
T ss_pred HHHHHCCCEEEcCCHHHHHHHhcC--CCEEEEeeCCCCCCccHHHHHHHHHHHHHHHC-CCcEEEEEeccchhhcCCCCh
Confidence 467899999999998887777655 89999999999999999999999999999997 777888899999877643
Q ss_pred ------CCHHHHHHHHHHHHHHHHHcCCCCCceEEEecccccccccHHHHH-HHHcccCHHHHHHhhCC----CCCcccc
Q 020745 136 ------LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMV-KVAKCVTYNKVVGIFGF----TGEDHIG 204 (322)
Q Consensus 136 ------~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~~~~~~~~~-~l~k~~t~~~~~~~~g~----~~~~s~~ 204 (322)
++.+++++|+ ++++.++|+|+||+++.|++|++|.....|.+++ ++++++|+++|+++.++ +++++++
T Consensus 83 ~~~R~~~~~~~i~~n~-~~i~~~la~gld~~k~~iv~ns~w~~~~~~~~~l~~~~~~~tv~~m~~~~~~~~R~~~~is~~ 161 (377)
T TIGR00234 83 SEERKLLTREEVQENA-ENIKKQIARFLDFEKAKFVNNSEWLLKLNYIDFIRDLGKIFSVNRMLRRDAFSSRLERGISLS 161 (377)
T ss_pred HHHhhcCCHHHHHHHH-HHHHHHHHHhCChhheEEEECchhcCcCCHHHHHHHHhCceEHHHHHcccHHHHHHhcCCCch
Confidence 5677788887 6788899999999999999999998765455554 59999999999998654 2479999
Q ss_pred ccchhhhhcCCCCCCCccccccCCCCcccccccccChhhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCC
Q 020745 205 KVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPN 284 (322)
Q Consensus 205 ~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~ 284 (322)
+|+||+|||||+ +.+.++ ++++|.||++|++.+||+|+|++...+..+..+++++++| .|||||. +
T Consensus 162 ef~YpllQa~D~--------~~l~~d---i~~gG~DQ~~ni~~g~dLar~~~~~~~~~~t~pLl~~~dg--~KmgKS~-~ 227 (377)
T TIGR00234 162 EFIYPLLQAYDF--------VYLNVD---LQIGGSDQWGNIRKGRDLIRRNLPSLGFGLTVPLLTPADG--EKMGKSG-G 227 (377)
T ss_pred hhhhHHHHHHHH--------HHHcCC---eeEecchhHHHHHHHHHHHHHhcCCCceeeceeeecCCCC--CCccCCC-C
Confidence 999999999974 445554 6799999999999999999999977777778888888885 8999997 5
Q ss_pred CeeecCCC-----------HHHHHHHHhccCccCCC
Q 020745 285 SAIYVTDS-----------AKAIKNKIILLKCADKQ 309 (322)
Q Consensus 285 ~aI~L~D~-----------p~~i~~KI~k~a~t~~~ 309 (322)
|+||++++ |+++.+||++++|..+.
T Consensus 228 ~~i~l~~~~~~~~i~~~d~~D~~~~Ki~k~~t~~~~ 263 (377)
T TIGR00234 228 GAVSLDEGKYDFYQFWINTPDEDVKKILKLFTFLGL 263 (377)
T ss_pred CcccCCccHhhhhhhhcCCcHHHHHHHHHHcCCCcH
Confidence 56666665 99999999997776665
No 21
>PRK12284 tryptophanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=2.1e-45 Score=359.80 Aligned_cols=219 Identities=20% Similarity=0.181 Sum_probs=176.8
Q ss_pred ceEEEEeeccCCCCcchhhhHHHHH-HHHHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 020745 85 KFYLYTGRGPSSEALHLGHLVPFMF-TKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (322)
Q Consensus 85 ~~~vytG~~PSg~slHlGhli~~~~-~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~ 163 (322)
...+|+|++||| .+|||||++.+. ..++|+..++.+++.|||+|+.+ +..+++++++++++++++|+|||+||+|+.
T Consensus 2 ~~rvlSGiqPTG-~lHLGNylGaik~~v~lq~q~~~~~~~~IADlHAlT-~~~dp~~lr~~~~e~aa~~LA~GlDPek~~ 79 (431)
T PRK12284 2 TTRVLTGITTTG-TPHLGNYAGAIRPAIAASRQPGVESFYFLADYHALI-KCDDPARIQRSTLEIAATWLAAGLDPERVT 79 (431)
T ss_pred ceEEEEEecCCC-cchHHHHHHHHHHHHHHHHhCCCcEEEEeechhhcc-CCCCHHHHHHHHHHHHHHHHHhCCCccceE
Confidence 357999999999 899999999863 22366545778899999999965 448999999999999999999999999999
Q ss_pred EEeccccccc--ccHHH-----HHHHHcccCHHHHHHhh---CCC--CCccccccchhhhhcCCCCCCCccccccCCCCc
Q 020745 164 IFSDFDYVGG--AFYKN-----MVKVAKCVTYNKVVGIF---GFT--GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHL 231 (322)
Q Consensus 164 I~~ns~~~~~--~~~~~-----~~~l~k~~t~~~~~~~~---g~~--~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~ 231 (322)
||.||++.++ .+|.. +.++.|+.++++..... |+. +++++|.|+||+||||| |+.+++
T Consensus 80 if~QSdvpeh~EL~wiL~~it~~g~L~Rm~q~K~k~~~~~~~g~~~~~~i~~Gll~YPvLqAAD--------ILly~a-- 149 (431)
T PRK12284 80 FYRQSDIPEIPELTWLLTCVAGKGLLNRAHAYKAAVDKNVAAGEDPDAGVTAGLFMYPVLMAAD--------ILMFNA-- 149 (431)
T ss_pred EEECCcchhHHHHHHHHHhhhhHHHHHhhhHHHHHHHhhhccccCcccCcchHHhhchHHHHhh--------hhhcCC--
Confidence 9999999865 23322 34677787777654332 332 45899999999999996 566776
Q ss_pred ccccccccChhhHHHHHHHHHHHhCC-------CCceee---ecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHh
Q 020745 232 RCLIPCAIDQDPYFRMTRDVAPRIGY-------HKPALI---ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKII 301 (322)
Q Consensus 232 ~~lvp~G~DQd~~~~ltrdla~k~~~-------~kp~~l---~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~ 301 (322)
++||||.||+||++||||+|+|+|+ +.|..+ ++++||||+| +|||||. +|+|+|+|+|++|++||+
T Consensus 150 -d~VPVG~DQ~qHlELaRdIA~rFN~~yg~~~F~~Pe~~i~~~~~~I~gLdg--~KMSKS~-~n~I~L~Ds~~~I~kKI~ 225 (431)
T PRK12284 150 -HKVPVGRDQIQHIEMARDIAQRFNHLYGGEFFVLPEAVIEESVATLPGLDG--RKMSKSY-DNTIPLFAPREELKKAIF 225 (431)
T ss_pred -CEEEEcchhHHHHHHHHHHHHHHhhhcCCcccCCCccccccccccccCCCC--ccccCCC-CCEeeecCCHHHHHHHHh
Confidence 6899999999999999999999984 234333 3689999997 7999999 799999999999999999
Q ss_pred ccCccCCCccccccCCCCCCC
Q 020745 302 LLKCADKQVCIFWRTRKCGIT 322 (322)
Q Consensus 302 k~a~t~~~~~~~~~~~~~~~~ 322 (322)
+ |+||++..- .|++|+++
T Consensus 226 ~-A~TDs~~~~--~~~~pe~s 243 (431)
T PRK12284 226 S-IVTDSRAPG--EPKDTEGS 243 (431)
T ss_pred c-CCCCCCCCC--CCCCCCcc
Confidence 9 899987521 24566653
No 22
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-41 Score=331.51 Aligned_cols=234 Identities=23% Similarity=0.302 Sum_probs=190.4
Q ss_pred hhhhhcCceeecCCHHHHHHHHHhCCceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccC-CC
Q 020745 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LS 137 (322)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~-~~ 137 (322)
..|..||++....+.+.+.+.++.+ ++.+|+||||||+++||||+++++++++||++ |+.++++|||.|+++..+ ..
T Consensus 7 ~~L~~Rg~~~~i~~ee~l~~ll~~~-~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~a-Gh~~ivLigd~ta~IgDpsGk 84 (401)
T COG0162 7 LELIKRGLIEQITDEEELRKLLEEG-PLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDA-GHKPIVLIGDATAMIGDPSGK 84 (401)
T ss_pred HHHHHcCchhccCcHHHHHHHHhcC-CceEEEeeCCCCCccchhhHHHHHHHHHHHHC-CCeEEEEecccceecCCCCCC
Confidence 4678999999999999888888875 99999999999999999999999999999997 778888889999888777 67
Q ss_pred HHHHHHHHH----HHHHHHH-HcCCCCC-ceEEEecccccccccHHHHHH-HHcccCHHHHHHhhCC------CCCcccc
Q 020745 138 VEESQRLAR----ENAKDII-ACGFDVT-KTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFGF------TGEDHIG 204 (322)
Q Consensus 138 ~e~i~~~~~----~~~~~ii-A~G~dp~-kt~I~~ns~~~~~~~~~~~~~-l~k~~t~~~~~~~~g~------~~~~s~~ 204 (322)
.++.+.++. +|++.+. ++|..++ ++.+.+|++|....-|.++++ +++++|+++|+++..+ ..+++++
T Consensus 85 ~e~r~~l~~e~v~~n~~~i~~ql~~~ld~k~~~v~ns~w~~~~~y~~~l~~~g~~~sv~rml~~d~~~~R~~~~~~is~~ 164 (401)
T COG0162 85 SEERKLLTRETVLENAETIKKQLGKFLDNKAEFVNNSDWLKKLNYLDFLRDVGKHFSVNRMLRRDDVKKRLEREQGISFT 164 (401)
T ss_pred HHHHhhccHHHHHHHHHHHHHHhcccCCcceEEEechHHhCcCCHHHHHHHHHhHccHHHHHHhhhHHHHhccCCCCchh
Confidence 777766665 4445444 4676666 999999999988766666665 9999999999998542 3479999
Q ss_pred ccchhhhhcCCCCCCCccccccCCCCcccccc-cccChhhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCC
Q 020745 205 KVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIP-CAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 283 (322)
Q Consensus 205 ~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp-~G~DQd~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p 283 (322)
||.||+||||| ++.++.| ++ +|.||+.++.++||+++|++..++++++.|+|++++| +|||||.
T Consensus 165 Ef~YpLmQayD--------~~~L~~d----lq~GG~DQ~~ni~~grdl~rr~g~~~~~~lt~PLL~~ldG--~KmgKs~- 229 (401)
T COG0162 165 EFNYPLLQAYD--------FVYLNKD----LQLGGSDQWGNILAGRDLIRRLGQKKVVGLTTPLLTGLDG--KKMGKSE- 229 (401)
T ss_pred hhhhHHHHHHH--------HHHHccc----hhcCChHHHHHHHHHHHHHHHhCCCCeEEEEeccccCCCC--CcccccC-
Confidence 99999999997 4455655 45 5555555555559999999999999999999999998 4999987
Q ss_pred CCeeecC----------CCHHHHHHHHhccCccCCC
Q 020745 284 NSAIYVT----------DSAKAIKNKIILLKCADKQ 309 (322)
Q Consensus 284 ~~aI~L~----------D~p~~i~~KI~k~a~t~~~ 309 (322)
+|++|++ +.+..|..|++++||+-..
T Consensus 230 ~~a~~~~s~~~Sp~~~yq~~~~i~D~~~~~~~~~~t 265 (401)
T COG0162 230 GGAVWLDSEKTSPYDFYQYWMNIEDADVKRFLKLLT 265 (401)
T ss_pred CCceEccCCCCCcHhhhhcHhcCcHHHHHHHHHHhC
Confidence 5666655 4557889999998888773
No 23
>KOG2713 consensus Mitochondrial tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-41 Score=312.04 Aligned_cols=222 Identities=23% Similarity=0.354 Sum_probs=186.7
Q ss_pred ceEEEEeeccCCCCcchhhhHHHHHHHH--HHHhCC--ceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCC
Q 020745 85 KFYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFK--VPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVT 160 (322)
Q Consensus 85 ~~~vytG~~PSg~slHlGhli~~~~~~~--lQ~~~g--~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~ 160 (322)
+-++++|++||| ++|||||++.+ -.| ||+.++ ..+.+.|+|.|+. +-+.+..+++++..++++.++|||+||+
T Consensus 13 ~~rvfSGIQPTG-~~HLGNYLGai-~~Wv~LQ~~~d~~~~~~f~vvDlHaI-Tvp~dp~~lrq~~~dm~A~lLAcGIdp~ 89 (347)
T KOG2713|consen 13 PKRVFSGIQPTG-IPHLGNYLGAI-KPWVQLQNEYDKNILVLFSVVDLHAI-TVPQDPAELRQATHDMAASLLACGIDPE 89 (347)
T ss_pred cceeEeccCCCC-Cchhhhhhhhh-hHHHHHHHHhcCCceEEEEEeeceee-cCCCChHHHHHHHHHHHHHHHHhccCcc
Confidence 567999999999 99999999995 567 888754 3466678999994 4345566999999999999999999999
Q ss_pred ceEEEeccccccc---ccHHH----HHHHHcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCccc
Q 020745 161 KTFIFSDFDYVGG---AFYKN----MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC 233 (322)
Q Consensus 161 kt~I~~ns~~~~~---~~~~~----~~~l~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~ 233 (322)
|+.+|.||+++.+ .|... +.+++++..+++...+++ ....++|.|+||+||||| |+.+++ +
T Consensus 90 Ks~lF~QS~Vpqh~el~WlLsslt~mg~L~rm~Q~KeKs~~~~-~~~~~vGLftYPvLqAAD--------ILLYks---T 157 (347)
T KOG2713|consen 90 KSSLFVQSDVPQHAELSWLLSSLTTMGRLARMPQWKEKSERFK-VGDVPVGLFTYPVLQAAD--------ILLYKS---T 157 (347)
T ss_pred cceeeeeccchHHHHHHHHHHhccchHHHHhhHHHHhhhhhhc-cCccceeeecchhHhhhh--------Hhhhcc---c
Confidence 9999999999875 34332 457888888888776543 346899999999999996 667776 6
Q ss_pred ccccccChhhHHHHHHHHHHHhCC-------CCceeee---cccccCCCCCCCcCCCCCC--CCeeecCCCHHHHHHHHh
Q 020745 234 LIPCAIDQDPYFRMTRDVAPRIGY-------HKPALIE---SSFFPALQGETGKMSASDP--NSAIYVTDSAKAIKNKII 301 (322)
Q Consensus 234 lvp~G~DQd~~~~ltrdla~k~~~-------~kp~~l~---~~~lp~L~G~~~KMSkS~p--~~aI~L~D~p~~i~~KI~ 301 (322)
.||||.||-||++|+|++|+++|. +.|..+. +..+.+|..+.+|||||+| .+.|+|+|+|++|.+||+
T Consensus 158 hVPVGeDQsQHleL~r~lA~~fN~~Y~~~~fpvP~~il~~~~~rV~SL~dpekKMSKSd~n~~s~I~l~DS~~~I~~Ki~ 237 (347)
T KOG2713|consen 158 HVPVGEDQSQHLELARHLAQAFNKTYGTEIFPVPEQILRQSHARVMSLRDPEKKMSKSDPNPKSRINLTDSPDLIVKKIK 237 (347)
T ss_pred cccCCccHHHHHHHHHHHHHHHhhhccCeeecCcHHHHhhhhhhhhhccChhhhcccCCCCCcceEEecCCHHHHHHHHH
Confidence 789999999999999999999986 3454443 5788899888899999997 479999999999999999
Q ss_pred ccCccCCCccccccCC-CCCCC
Q 020745 302 LLKCADKQVCIFWRTR-KCGIT 322 (322)
Q Consensus 302 k~a~t~~~~~~~~~~~-~~~~~ 322 (322)
| |.||....+.|||. ||||+
T Consensus 238 k-a~TD~~~~vtYd~~~Rpgvs 258 (347)
T KOG2713|consen 238 K-AQTDNTSGVTYDPANRPGVS 258 (347)
T ss_pred H-HhcccccceeeCCccccchh
Confidence 9 99999999999987 99985
No 24
>KOG2144 consensus Tyrosyl-tRNA synthetase, cytoplasmic [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-38 Score=290.29 Aligned_cols=233 Identities=21% Similarity=0.282 Sum_probs=187.4
Q ss_pred hhhhhcCc--eeecCCHHHHHHHHHhCCceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccC-
Q 020745 59 HVFLRRGV--FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN- 135 (322)
Q Consensus 59 ~~l~~Rgi--~~~~~d~~~ll~~~~~~~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~- 135 (322)
-.|++|++ +.+...+..| +++ +.+.+|+|+.||| ++|+|.++|++.++.|-+| ||.|.|++||+|+|+++.
T Consensus 10 ~~lItrnlqE~lgee~lk~i---L~e-r~l~~YwGtaptG-rpHiay~vpm~kiadflkA-GC~VtIl~AD~hA~LdNmk 83 (360)
T KOG2144|consen 10 YKLITRNLQEVLGEEELKNI---LAE-RALKCYWGTAPTG-RPHIAYFVPMMKIADFLKA-GCEVTILFADLHAFLDNMK 83 (360)
T ss_pred HHHHHHHHHHHhCHHHHHHH---Hhc-cCceeeecCCCCC-CcceeeeeehhHHHHHHhc-CCeEEEEehHHHHHHhccc
Confidence 34555554 3333334444 444 7789999999999 9999999999999999887 999999999999999987
Q ss_pred CCHHHHHHHHHHHHHHHHH-c---CCCCCceEEE--ecccccccccHHHHHHHHcccCHHHHHHh--hCC--CCCccccc
Q 020745 136 LSVEESQRLARENAKDIIA-C---GFDVTKTFIF--SDFDYVGGAFYKNMVKVAKCVTYNKVVGI--FGF--TGEDHIGK 205 (322)
Q Consensus 136 ~~~e~i~~~~~~~~~~iiA-~---G~dp~kt~I~--~ns~~~~~~~~~~~~~l~k~~t~~~~~~~--~g~--~~~~s~~~ 205 (322)
..++.+..++.++-+.|.+ + +.+.++..+. +|++. +..|-.++.++++.+|-...+.. .+. .+..+++.
T Consensus 84 ap~e~~~~rv~yYe~~Ik~~l~~~nv~lEkL~fv~gs~yq~-sk~ytld~~rl~~~~~~hdak~agaevvkqve~plls~ 162 (360)
T KOG2144|consen 84 APDELVIRRVGYYEKEIKAALGSINVPLEKLKFVKGSNYQL-SKYYTLDMYRLSSNVTQHDAKKAGAEVVKQVENPLLSG 162 (360)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhcCCcHHHHhhhccccccc-CccchhhHHHHHhhccHhHHHHhhhhHHHhhcchhhhh
Confidence 8889888888777666554 3 4444555333 34443 34555677788888888877654 333 25788999
Q ss_pred cchhhhhcCCCCCCCccccccCCCCcccccccccChhhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCC
Q 020745 206 VSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 285 (322)
Q Consensus 206 ~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~ 285 (322)
+.||+|||+|. +.++.|.. ++|.||+..+.++|++++-+|++||.++.++|+|||++ |+|||||+|++
T Consensus 163 llYP~MQalDe--------~~L~vD~q---fgGvDQRKIf~~A~eylp~l~ykKrihLmnpMvPGL~q-~~KMSsSd~~S 230 (360)
T KOG2144|consen 163 LLYPGMQALDE--------FYLEVDAQ---FGGVDQRKIFVLAEEYLPDLGYKKRIHLMNPMVPGLAQ-GEKMSSSDPLS 230 (360)
T ss_pred hhhhhHHHhhH--------HHHhhhHH---hcCccHHHHHHHHHHhhhhhCcccceeecCCCCccccc-cCccccCCccc
Confidence 99999999974 34566652 89999999999999999999999999999999999997 69999999999
Q ss_pred eeecCCCHHHHHHHHhccCccCCCc
Q 020745 286 AIYVTDSAKAIKNKIILLKCADKQV 310 (322)
Q Consensus 286 aI~L~D~p~~i~~KI~k~a~t~~~~ 310 (322)
+|+|.|+|++|.+||+|+||++|+.
T Consensus 231 kIdllD~~~~V~kKI~kAfCePg~v 255 (360)
T KOG2144|consen 231 KIDLLDEPADVNKKIKKAFCEPGNV 255 (360)
T ss_pred ccccccCHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999865
No 25
>KOG2623 consensus Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.3e-35 Score=278.21 Aligned_cols=221 Identities=19% Similarity=0.294 Sum_probs=167.8
Q ss_pred hhhhhcCceeecCCHHH---HHHHH-HhCCceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEE------EeeCc
Q 020745 59 HVFLRRGVFFAHRDLND---ILDAY-EKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI------QLTDD 128 (322)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~---ll~~~-~~~~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I------~IaD~ 128 (322)
-.+..||+| ++.-.+. ..+.+ .++-|.+||+|||||++|||+||++++|-+.|+|.+++-++.+ .||||
T Consensus 34 ~~l~aR~l~-~~s~Pet~~~~~~~L~~rglp~~vYcGfDPTA~SLHvGNLl~lm~L~hfqr~Gh~~ialIGgATa~vGDP 112 (467)
T KOG2623|consen 34 TELKARGLF-QTSFPETLSKCSEDLNGRGLPQYVYCGFDPTAESLHVGNLLALMVLIHFQRAGHRPIALIGGATASVGDP 112 (467)
T ss_pred HHHHhcccc-cccCCCccchhhhhhhcCCCCceEEecCCCcHHhhhhcchHHHHHHHHHHHcCCCceEEeccccccccCC
Confidence 456789998 4443332 33333 3555899999999999999999999999999999987766666 48999
Q ss_pred cc-ccccC-CCHHHHHHHHHHHHHHHHH----------cCCCCCceEEEecccccccccHHHHHH-HHcccCHHHHHHh-
Q 020745 129 EK-CMWKN-LSVEESQRLARENAKDIIA----------CGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGI- 194 (322)
Q Consensus 129 ~~-~l~r~-~~~e~i~~~~~~~~~~iiA----------~G~dp~kt~I~~ns~~~~~~~~~~~~~-l~k~~t~~~~~~~- 194 (322)
++ ..+|+ +..+.+++|++..-..+.+ +|..-.+-.|++|++|.++.-..+|+. +++++.+..|+++
T Consensus 113 SGrktER~~l~~d~~~~N~~~I~~ql~~if~n~~~~~~~~~s~g~~~ivnN~dW~~d~~llDFLa~vGrh~RvgsMLar~ 192 (467)
T KOG2623|consen 113 SGRKTERGQLAEDTREANSRSITQQLCKIFENHPEYYRDGSSQGKYIIVNNSDWYKDIKLLDFLAEVGRHFRVGSMLARD 192 (467)
T ss_pred CCCccchhhhhhHHHHHhHHHHHHHHHHHHhcChhhhcCCcccCceeEeechHHhhhchHHHHHHHhchhhhHHHHHHHH
Confidence 95 45566 7777788887654333332 344435668999999998766777764 7788888777765
Q ss_pred -----hCCCCCccccccchhhhhcCCCCCCCccccccCCCCcccccccccChhhHHHHH--HHHHHHhCCCCceeeeccc
Q 020745 195 -----FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMT--RDVAPRIGYHKPALIESSF 267 (322)
Q Consensus 195 -----~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~~lt--rdla~k~~~~kp~~l~~~~ 267 (322)
+..++++|+.||+|++||||| |++++. +++|.+|+|+. |||+||+ .|+++|+-..+ +..++.+
T Consensus 193 SV~~RLes~~GlSftEFtYQ~lQAYD-----fy~L~~---~~g~~~QlGGs-DQwGNitaG~dlI~ki~~~~-~~vfGlT 262 (467)
T KOG2623|consen 193 SVKSRLESPNGLSFTEFTYQLLQAYD-----FYHLYE---NYGCRFQLGGS-DQWGNITAGTDLIRKIMPIQ-AFVFGLT 262 (467)
T ss_pred HHHHhhcCCCCCcHHHHHHHHHHHHh-----HHHHHH---hcCeeEEeccc-ccccccchHHHHHHHhcccc-cceeeee
Confidence 455679999999999999998 446653 57799999998 9999998 89999985432 4456777
Q ss_pred ccCCCCC-CCcCCCCCCCCeeecCC
Q 020745 268 FPALQGE-TGKMSASDPNSAIYVTD 291 (322)
Q Consensus 268 lp~L~G~-~~KMSkS~p~~aI~L~D 291 (322)
+|.|+.+ |.|++||+ +|||||+.
T Consensus 263 ~PLlTsstG~KlGKSa-GnAvWLdp 286 (467)
T KOG2623|consen 263 FPLLTSSTGAKLGKSA-GNAVWLDP 286 (467)
T ss_pred eeeEecCcchhhccCC-CceEEecC
Confidence 7777553 69999999 88999986
No 26
>PTZ00348 tyrosyl-tRNA synthetase; Provisional
Probab=99.96 E-value=3.4e-29 Score=258.38 Aligned_cols=182 Identities=12% Similarity=0.111 Sum_probs=158.5
Q ss_pred HHHHhCCceEEEEeeCcccccccC--CCHHHHHHHHHHHHHHHHHcCCCCCce-EEEeccccccc--ccHHHHHHHHccc
Q 020745 112 YLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDVTKT-FIFSDFDYVGG--AFYKNMVKVAKCV 186 (322)
Q Consensus 112 ~lQ~~~g~~v~I~IaD~~~~l~r~--~~~e~i~~~~~~~~~~iiA~G~dp~kt-~I~~ns~~~~~--~~~~~~~~l~k~~ 186 (322)
.|+++.||.++|+||||||+++++ .++++|++.++++++.|.|+|+|++ + |||.+....++ +||..++++++++
T Consensus 401 ~~~~~~g~~~~illADwhA~lN~k~~G~l~~I~~~~~y~~~~~~a~G~~~~-v~fv~~sd~~~~~~~~Yw~~v~~ia~~~ 479 (682)
T PTZ00348 401 FIAAHSDGTVTLVLPDWSAVASDEITGEEKDISAALEVNCALLKAYGLPSE-VKIVRENEVILGNPNDFWVSVIGIARKN 479 (682)
T ss_pred HHHHcCCCeEEEEeehhHHHhcCccCCCHHHHHHHHHHHHHHHHHcCCCCC-cEEEEchHhhhcCchhHHHHHHHHHHhc
Confidence 477778999999999999999987 8999999999999999999999998 8 55544434442 8999999999999
Q ss_pred CHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcccccccccChhhHHHHHHHHHHHhCCCCceeeecc
Q 020745 187 TYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESS 266 (322)
Q Consensus 187 t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~~ltrdla~k~~~~kp~~l~~~ 266 (322)
|+++++++.| .+..+++++.||+||++| ++.++.|+ .++|.||+..++|+||++++.. +|....+.
T Consensus 480 tl~r~~r~~g-~~~~~~s~~iYP~MQ~~D--------i~~L~~di---~~gG~DQRki~mlAre~~~~~~--~~~~~~~~ 545 (682)
T PTZ00348 480 LLSHVEELYG-GELRNAGQVIAALMRVAT--------ALMLSASH---VISTSLDGGINEFAREYTKGRI--ECIQALEG 545 (682)
T ss_pred cHHHHHHHhc-CCcccHHHHHHHHHHHHH--------HHhcCCCe---eecChhHHHHHHHHHHhccccc--cchhhcCC
Confidence 9999999987 566799999999999996 55667765 3799999999999999999754 34446788
Q ss_pred cccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhccCccCC
Q 020745 267 FFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADK 308 (322)
Q Consensus 267 ~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t~~ 308 (322)
++|+|.++..+|++|+++|+|||+|++++|++||++|||+++
T Consensus 546 ~~p~l~~~~~~~~~~s~~s~i~~~D~~~~i~~Ki~kA~Cpp~ 587 (682)
T PTZ00348 546 RVPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKKAYSAPN 587 (682)
T ss_pred CCccccccccccCCCCCCCeeeecCCHHHHHHHHHhCCCCCC
Confidence 899998777889998889999999999999999999999984
No 27
>cd00802 class_I_aaRS_core catalytic core domain of class I amino acyl-tRNA synthetase. Class I amino acyl-tRNA synthetase (aaRS) catalytic core domain. These enzymes are mostly monomers which aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.37 E-value=2.9e-12 Score=108.87 Aligned_cols=65 Identities=17% Similarity=0.042 Sum_probs=52.7
Q ss_pred hhhhhcCCCCCCCccccccCCCCcccccccccChhhHHHHHHHHHHHhCCC-CceeeecccccCCCCCCCcCCCCC
Q 020745 208 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASD 282 (322)
Q Consensus 208 YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~~ltrdla~k~~~~-kp~~l~~~~lp~L~G~~~KMSkS~ 282 (322)
|++.|+||++ .......+++++|.||.+|++..++++++++.. +|..++..+|++..| +|||||.
T Consensus 78 y~~~~~a~~~--------~~~~~~~~i~~~G~Dq~~h~~~~~~i~~~~~~~~~p~~~~~~~l~~~~g--~KmSks~ 143 (143)
T cd00802 78 YMFLQAADFL--------LLYETECDIHLGGSDQLGHIELGLELLKKAGGPARPFGLTFGRVMGADG--TKMSKSK 143 (143)
T ss_pred HHHHHHHHHH--------HHhhCCcEEEEechhHHHHHHHHHHHHHHhCCCCCceEEEeCCeECCCC--CcCCCCC
Confidence 9999999743 222233467799999999999999999999764 688888888888775 7999984
No 28
>cd00808 GluRS_core catalytic core domain of discriminating glutamyl-tRNA synthetase. Discriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The discriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=99.21 E-value=1.1e-10 Score=107.84 Aligned_cols=170 Identities=14% Similarity=0.176 Sum_probs=116.2
Q ss_pred ccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------E
Q 020745 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF-------I 164 (322)
Q Consensus 93 ~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~-------I 164 (322)
.||| .|||||+..++ .+| +.+..|..+++.|-|.-. ..+.+ .+...+.+++..+|+++++.. +
T Consensus 9 sPtG-~LHlG~~~~al-~n~l~ar~~~G~~ilRieDtd~----~r~~~---~~~~~i~~dL~wlGl~~d~~~~~~g~~~~ 79 (239)
T cd00808 9 SPTG-FLHIGGARTAL-FNYLFARKHGGKFILRIEDTDQ----ERSVP---EAEEAILEALKWLGLDWDEGPDVGGPYGP 79 (239)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHcCCeEEEEECcCCC----CCCch---HHHHHHHHHHHHcCCCCCcCCccCCCCCC
Confidence 5898 89999999995 556 334456667777777431 11222 333456777788899998732 6
Q ss_pred EecccccccccHHHHH-HHHcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcccccccccChhh
Q 020745 165 FSDFDYVGGAFYKNMV-KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDP 243 (322)
Q Consensus 165 ~~ns~~~~~~~~~~~~-~l~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~ 243 (322)
|.||+-. ..|..++ ++- + .| -|..+|++.++.| |.. .+. +.|+.|.|+..
T Consensus 80 ~~QS~r~--~~y~~~~~~L~---------~-~g------dg~ptY~~a~~vD-------D~~-~~i---thViRG~D~~~ 130 (239)
T cd00808 80 YRQSERL--EIYRKYAEKLL---------E-KG------DGFPTYHLANVVD-------DHL-MGI---THVIRGEEHLS 130 (239)
T ss_pred EeeeCCH--HHHHHHHHHHH---------H-cC------CCCcccccHHHHh-------HHh-cCC---CEEEEChhhhh
Confidence 7788742 3444332 221 1 11 2788999999998 544 333 67899999999
Q ss_pred HHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeec----CCCHHHHHHHHhc
Q 020745 244 YFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYV----TDSAKAIKNKIIL 302 (322)
Q Consensus 244 ~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L----~D~p~~i~~KI~k 302 (322)
+....+.+++.+|.+.|...+.+++.+.+| .||||+..+.+|-- --+|+.|..-+..
T Consensus 131 ~t~~q~~l~~aLg~~~p~~~h~pll~~~~g--~KLSKR~~~~~l~~lr~~G~~p~ai~~~l~~ 191 (239)
T cd00808 131 STPKQILLYEALGWEPPKFAHLPLILNPDG--KKLSKRKGDTSISDYREEGYLPEALLNYLAL 191 (239)
T ss_pred ChHHHHHHHHHcCCCCCceEeeccccCCCC--CcccCCCCCccHHHHHHCCCCHHHHHHHHHH
Confidence 999999999999999998777777777775 89999984333321 1357777765543
No 29
>PRK00750 lysK lysyl-tRNA synthetase; Reviewed
Probab=98.87 E-value=3.2e-08 Score=100.93 Aligned_cols=206 Identities=17% Similarity=0.232 Sum_probs=114.2
Q ss_pred HHHHHHHhCCceEEEEeeccCCCCcchhhhHHHH----HHHHHHHhCCceE-EEEeeCcccccccC---CC---------
Q 020745 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPL-VIQLTDDEKCMWKN---LS--------- 137 (322)
Q Consensus 75 ~ll~~~~~~~~~~vytG~~PSg~slHlGhli~~~----~~~~lQ~~~g~~v-~I~IaD~~~~l~r~---~~--------- 137 (322)
+|++....+.++.+-||+.||| .+||||+-.++ ..++|... |.++ +|..+|++.-+.+- ++
T Consensus 14 ~~~~r~~~~~~~~~~~g~~psG-~~HiG~~~e~~~~d~v~r~lr~~-G~~v~~i~~~Dd~d~lRkvp~~~p~~~~~~~~~ 91 (510)
T PRK00750 14 KIIKRLGKKPPVVVETGIGPSG-LPHIGNFREVARTDMVRRALRDL-GIKTRLIFFSDDMDGLRKVPDNVPNQEMLEEYL 91 (510)
T ss_pred HHHHhcCCCCcEEEEeCCCCCC-CcccccccchhhHHHHHHHHHHc-CCcEEEEEEEecCCcccccCCCCCchHHHHHhc
Confidence 4444333344588999999999 99999976543 33456665 5555 45678998532211 11
Q ss_pred --------------HHHHHHHHHHHHHHHHHcCCCCCceEEEecccccccccHHHHHH--HHcccCHHHHHHhh-CCC--
Q 020745 138 --------------VEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK--VAKCVTYNKVVGIF-GFT-- 198 (322)
Q Consensus 138 --------------~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~~~~~~~~~~--l~k~~t~~~~~~~~-g~~-- 198 (322)
.+-+.++.....+.+-.+|++.+ ++++++...+..|...++ +.+.=.+.+++..+ |.+
T Consensus 92 G~pl~~~p~p~G~~~~~~~~~~~~~~~~~~~~gi~~d---~~~~t~~y~~g~~~~~i~~~l~~~~~i~~il~~~~~~~~~ 168 (510)
T PRK00750 92 GKPLTEIPDPFGCHESYAEHFNAPLREFLDRFGIEYE---FISATECYKSGRYDEAILTALENRDEIMEILLPYLGEERQ 168 (510)
T ss_pred CcccccCCCCCCCchHHHHHHHHHHHHHHHHcCCceE---EEehhhhhccCchHHHHHHHHHhHHHHHHHHHHhcCCccC
Confidence 11222333334444556899653 566666654434433332 33333333333322 210
Q ss_pred C--------CccccccchhhhhcCCCCCC--Cc---------cccc-----------------cCCCCcccccccccChh
Q 020745 199 G--------EDHIGKVSFPPVQAVPSFPS--SF---------PHLF-----------------SGKDHLRCLIPCAIDQD 242 (322)
Q Consensus 199 ~--------~~s~~~~~YP~lQaad~~~~--~f---------~~i~-----------------~~~~~~~~lvp~G~DQd 242 (322)
+ .-+.|.+..-.+=++|.=.. .| -++. .++. ...|.|.||.
T Consensus 169 ~~~~P~~pic~~cg~~~~~~~~~~d~~~~~v~y~~~cG~~~~~~~~~g~~KL~Wr~dW~~rW~~l~V---d~e~~GkDh~ 245 (510)
T PRK00750 169 ATYSPFLPICPKCGKVLTTPVISYDAEAGTVTYDCECGHEGEVPVTGGHGKLQWKVDWPMRWAALGV---DFEPFGKDHA 245 (510)
T ss_pred CCeeeeeeeCCCCCccceEEEEEEeCCCCEEEEEcCCCCEEEEecCCCCcccCCCCCcHHHHHHcCC---CEEeeCcccC
Confidence 0 01122222211111110000 00 0011 1222 3458999999
Q ss_pred h-HHHHHHHHHH-HhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 243 P-YFRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 243 ~-~~~ltrdla~-k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
. ...+++.+++ .++.+.|..++..++..-+| +|||||. +|.|.+.|
T Consensus 246 ~~s~~~~~~i~~~ilg~~~P~~~~y~~v~~~~G--~KMSKSk-GN~i~~~d 293 (510)
T PRK00750 246 SASYDTSKKIAREILGGEPPEPFVYELFLDKKG--EKISKSK-GNVITIED 293 (510)
T ss_pred cchHHHHHHHHHHHcCCCCCeeeeeeeEEeCCC--CcccccC-CCccCHHH
Confidence 9 9999999999 89988888777777765544 8999998 89998876
No 30
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=98.85 E-value=3.4e-08 Score=90.84 Aligned_cols=168 Identities=14% Similarity=0.225 Sum_probs=111.5
Q ss_pred ccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 020745 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (322)
Q Consensus 93 ~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (322)
.||| .|||||+..++ .+| +-+..|..+++-|=|.-. .| .. ......+.+++..+|++.+.- ++.||+..
T Consensus 9 sPtG-~lHlG~~r~al-~n~l~Ar~~~G~~iLRieDtD~--~R-~~----~~~~~~I~~dL~wlGl~wd~~-~~~QS~r~ 78 (230)
T cd00418 9 SPTG-YLHIGHARTAL-FNFAFARKYGGKFILRIEDTDP--ER-SR----PEYVESILEDLKWLGLDWDEG-PYRQSDRF 78 (230)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHcCCeEEEEeCcCCC--CC-CC----hHHHHHHHHHHHHcCCCCCCC-eeehhcCH
Confidence 5898 89999999985 566 555567777887755432 12 11 233345677778899988763 56788753
Q ss_pred ccccHHHHH-HHHcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcccccccccChhhHHHHHHH
Q 020745 172 GGAFYKNMV-KVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRD 250 (322)
Q Consensus 172 ~~~~~~~~~-~l~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~~ltrd 250 (322)
..|..++ ++- + .+ |..+|-+--+.| |.+. + + +.|..|.|+...-..-+.
T Consensus 79 --~~y~~~~~~L~---------~-----~g---g~p~Y~la~vvD-------D~~~-g--I-ThViRG~D~l~st~~q~~ 128 (230)
T cd00418 79 --DLYRAYAEELI---------K-----KG---GYPLYNFVHPVD-------DALM-G--I-THVLRGEDHLDNTPIQDW 128 (230)
T ss_pred --HHHHHHHHHHH---------H-----cC---CCcccccccccc-------cccc-C--C-CEEEECHhhhhchHHHHH
Confidence 2333322 221 1 01 555565555555 5442 2 3 567899998888778899
Q ss_pred HHHHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecC----CCHHHHHHHHhc
Q 020745 251 VAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT----DSAKAIKNKIIL 302 (322)
Q Consensus 251 la~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~----D~p~~i~~KI~k 302 (322)
+++.+|.++|...|.+++...+| +||||+..+.+|--. -.|+.|..=+..
T Consensus 129 l~~~Lg~~~P~~~H~pll~~~~g--~KLSKr~~~~~i~~~r~~G~~p~ai~~~l~~ 182 (230)
T cd00418 129 LYEALGWEPPRFYHFPRLLLEDG--TKLSKRKLNTTLRALRRRGYLPEALRNYLAL 182 (230)
T ss_pred HHHHcCCCCCeEEEeeeeeCCCC--CCccCcCCCcCHHHHHHCCCcHHHHHHHHHH
Confidence 99999999999889988888775 899999844344221 467777766643
No 31
>cd00674 LysRS_core_class_I catalytic core domain of class I lysyl tRNA synthetase. Class I lysyl tRNA synthetase (LysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The class I LysRS is found only in archaea and some bacteria and has evolved separately from class II LysRS, as the two do not share structural or sequence similarity.
Probab=98.77 E-value=1.4e-07 Score=92.07 Aligned_cols=208 Identities=18% Similarity=0.291 Sum_probs=111.5
Q ss_pred HHHHHHHhCCceEEEEeeccCCCCcchhhhHHHH---HHHHHHHhCCceE-EEEeeCccccccc-------------CC-
Q 020745 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPL-VIQLTDDEKCMWK-------------NL- 136 (322)
Q Consensus 75 ~ll~~~~~~~~~~vytG~~PSg~slHlGhli~~~---~~~~lQ~~~g~~v-~I~IaD~~~~l~r-------------~~- 136 (322)
+|++....+.++.+-||+-||| .+||||+..++ ++.+.++..|.++ +|..+|.+.-+.+ ..
T Consensus 10 ~~~~~~~~~~~~~v~tgi~psG-~~HIG~~~e~i~~D~i~R~lr~~G~~v~~v~~~Dd~d~lrKvp~~l~~~~~~~~G~p 88 (353)
T cd00674 10 KIIEERKGKEKYVVASGISPSG-HIHIGNFREVITADLVARALRDLGFEVRLIYSWDDYDRLRKVPPNVPESYEQYIGMP 88 (353)
T ss_pred HHHHhccCCCeEEEecCCCCCC-CcccCccHHHHHHHHHHHHHHHcCCCEEEEEEEcCCCcccccccchhhHHHHhcCcc
Confidence 3443333345788899999998 99999977543 3334333345554 4567888832222 01
Q ss_pred ----------CHHHHHHHHHHHHHHHHHcCCCCCceEEEecccccccccHHHHH-H-HHcccCHHHHHHhh-CC--CC--
Q 020745 137 ----------SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMV-K-VAKCVTYNKVVGIF-GF--TG-- 199 (322)
Q Consensus 137 ----------~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~~~~~~~~~-~-l~k~~t~~~~~~~~-g~--~~-- 199 (322)
..+-+.++.....+.+-.+|++.+ ++++++...+--|...+ . |.+.=.+.+++..+ |. .+
T Consensus 89 i~~ip~p~g~~~~~~d~~~~~f~~~l~~lgi~~d---~~~~T~~y~~g~~~~~i~~~L~~~~~I~~i~~~~~~~~~~~~~ 165 (353)
T cd00674 89 LSSVPDPFGCCESYAEHFERPFEESLEKLGIEVE---FISQSQMYKSGLYDENILIALEKRDEIMAILNEYRGRELQETW 165 (353)
T ss_pred chhchhhcCCCHHHHHHHHHHHHHHHHHcCCeee---eeecCCchhhchHHHHHHHHHHHCChHHHHHHHhcCCccCCCc
Confidence 122234444455555667899754 45666654443333322 2 44444444443321 21 00
Q ss_pred ------Ccccc--------------ccchhhh----hcCCC--------CCCCccc-cccCCCCcccccccccChhhH--
Q 020745 200 ------EDHIG--------------KVSFPPV----QAVPS--------FPSSFPH-LFSGKDHLRCLIPCAIDQDPY-- 244 (322)
Q Consensus 200 ------~~s~~--------------~~~YP~l----Qaad~--------~~~~f~~-i~~~~~~~~~lvp~G~DQd~~-- 244 (322)
.-+.| .+.|-+= -.+|. |...+|- ...++.+ .-+.|.||..+
T Consensus 166 ~P~~p~c~~cg~~~~~v~~~d~~~~~v~y~c~cG~~g~~~~~~g~~KL~Wr~dW~~rW~~l~Vd---~E~~GkDh~~~gg 242 (353)
T cd00674 166 YPFMPYCEKCGKDTTTVEAYDAKAGTVTYKCECGHEETVDIRTGRGKLTWRVDWPMRWAILGVD---FEPFGKDHASAGG 242 (353)
T ss_pred eeeeeecCCcCcceeEEEEEeCCCCeEEEEcCCCCEEEEeecCCCcccCCCCCchhhhhhcCCC---EEeeCcccccccc
Confidence 01222 2333210 00000 0000010 0012222 23789999888
Q ss_pred -HHHHHHHHH-HhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCCC
Q 020745 245 -FRMTRDVAP-RIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDS 292 (322)
Q Consensus 245 -~~ltrdla~-k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~ 292 (322)
+...+.+++ .++.+.|..+..-++- +.| +.|||||. +|.|.+.|=
T Consensus 243 s~~~~~~i~~~ilg~~~P~~~~ye~V~-l~g-g~KMSKSk-GnvI~~~dl 289 (353)
T cd00674 243 SYDTGKEIAREIFGGEPPVPVMYEFIG-LKG-GGKMSSSK-GNVITPSDW 289 (353)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEeeeEE-eCC-CCccCCCC-CCcCCHHHH
Confidence 999999999 8998888665555543 554 36999998 899988873
No 32
>TIGR00467 lysS_arch lysyl-tRNA synthetase, archaeal and spirochete. This model represents the lysyl-tRNA synthetases that are class I amino-acyl tRNA synthetases. It includes archaeal and spirochete examples of the enzyme. All other known examples are class IIc amino-acyl tRNA synthetases and seem to form a separate orthologous set.
Probab=98.39 E-value=5e-06 Score=84.91 Aligned_cols=201 Identities=16% Similarity=0.262 Sum_probs=105.2
Q ss_pred CceEEEEeeccCCCCcchhhhHHHH----HHHHHHHhCCceEEEEeeCcccccccC---CC-------------------
Q 020745 84 EKFYLYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQLTDDEKCMWKN---LS------------------- 137 (322)
Q Consensus 84 ~~~~vytG~~PSg~slHlGhli~~~----~~~~lQ~~~g~~v~I~IaD~~~~l~r~---~~------------------- 137 (322)
+++.+=||+.||| .+||||+.-++ ..+.+...+.--.+|..+|++.-+.+- ++
T Consensus 18 ~~~~~~tg~~psG-~~HiG~~~e~~~~d~v~r~~r~~g~~~~~i~~~Dd~D~lRKvp~~~p~~~~~ylG~Pl~~vpdp~g 96 (515)
T TIGR00467 18 NLYTVASGITPSG-HIHIGNFREVITADAIARALRDSGSEARFIYIADNYDPLRKVYPFLPEELETYLGMPLTRIPDPEG 96 (515)
T ss_pred CeEEEecCCCCCC-CccccchhhhhHHHHHHHHHHHcCCCEEEEEEEcCCcccccccccccHHHHHhCCCcceecCCCCC
Confidence 4789999999999 99999987643 334465554333455678888212110 11
Q ss_pred --HHHHHHHHHHHHHHHHHcCCCCCceEEEecccccccccHHHHHH--HHcccCHHHHHHhh-CC--CC--------Ccc
Q 020745 138 --VEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK--VAKCVTYNKVVGIF-GF--TG--------EDH 202 (322)
Q Consensus 138 --~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~~~~~~~~~~--l~k~~t~~~~~~~~-g~--~~--------~~s 202 (322)
.+-+.++-....+.+-.+|++ ..++++++....-.|...++ |.+.-.+.++...+ |. .+ .-+
T Consensus 97 ~~~s~~~h~~~~~~~~l~~~gi~---~e~~s~te~Y~sG~~~~~i~~~L~~~~~I~~il~~~~~~~~~~~~~P~~pic~~ 173 (515)
T TIGR00467 97 CKTSYAEHFLIPFLESLPVLGIN---PEFIRASKQYTSGLYASQIKIALDHRKEISEILNEYRTSKLEENWYPISVFCEN 173 (515)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCe---EEEEEHHHhhhcCChHHHHHHHHHhHHHHHHHHHHhcCCccCCCceeeeeecCC
Confidence 111222222334444568884 46778888776545555443 33333333333322 21 11 235
Q ss_pred ccccchhhhhcCCCC-CCCcc---------ccccCCCCcc--------------cccccccChhhHH---HHHHHHHH-H
Q 020745 203 IGKVSFPPVQAVPSF-PSSFP---------HLFSGKDHLR--------------CLIPCAIDQDPYF---RMTRDVAP-R 254 (322)
Q Consensus 203 ~~~~~YP~lQaad~~-~~~f~---------~i~~~~~~~~--------------~lvp~G~DQd~~~---~ltrdla~-k 254 (322)
.|.+..|+. .+|.= .-.|- ++...+.+.+ ..-|.|.|+..-+ ....++|+ -
T Consensus 174 cGrv~~~~~-~~~~~~~v~Y~c~cG~~g~~~~~~g~~KL~WkvdW~~RW~~lgV~~Ep~GkDH~~~ggsy~~~~~ia~~~ 252 (515)
T TIGR00467 174 CGRDTTTVN-NYDNEYSIEYSCECGNQESVDIYTGAIKLPWRVDWPARWKIEKVTFEPAGKDHAAAGGSYDTGVNIAKEI 252 (515)
T ss_pred cCccCceEE-EecCCceEEEEcCCCCEEEEeecCCCcccCCCCCcHhhHhhhCcccccCCCCccCccCCchhHHHHHHHH
Confidence 566666655 44310 00010 0111000110 1126777765423 44466676 4
Q ss_pred hCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 255 IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 255 ~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
+|...|..+..-++- |.|.|+|||||. +|.|.+.|
T Consensus 253 l~~~~P~~~~ye~v~-L~~~g~KMSKS~-Gn~itl~d 287 (515)
T TIGR00467 253 FQYSPPVTVQYEWIS-LKGKGGKMSSSK-GDVISVKD 287 (515)
T ss_pred hCCCCCcCcEEEEEE-EcCCCccccCCC-CCCccHHH
Confidence 666666433322222 556568999999 88888866
No 33
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.88 E-value=0.00011 Score=68.05 Aligned_cols=164 Identities=15% Similarity=0.188 Sum_probs=96.6
Q ss_pred EEeeccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEec
Q 020745 89 YTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 167 (322)
Q Consensus 89 ytG~~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~n 167 (322)
=+|-.||| .|||||+..++ ..| +.+.++..+++-|-|...- |.-..++. ...+.+++..+|++++. ++.|
T Consensus 5 RfaPsPtG-~lHiG~~rtal-~~~l~Ar~~~G~~ilRieDtD~~--r~~~~~~~---~~~i~~dL~wLGl~~d~--~~~q 75 (240)
T cd09287 5 RFAPNPNG-PLHLGHARAAI-LNGEYAKMYGGKFILRFDDTDPR--TKRPDPEA---YDMIPEDLEWLGVKWDE--VVIA 75 (240)
T ss_pred eCCCCCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEeeCcCCCC--cccchHHH---HHHHHHHHHHcCCCCCC--ccch
Confidence 35667998 89999999985 455 6666788888888887531 10022222 23467788889998874 5778
Q ss_pred ccccccccHHHHH-H-HHcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcccccccccChhhHH
Q 020745 168 FDYVGGAFYKNMV-K-VAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYF 245 (322)
Q Consensus 168 s~~~~~~~~~~~~-~-l~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~ 245 (322)
|+.. ..|..++ + +.+-.-+. .... .+.- +.||..|=|-.+ -|.+. .+ +.|..|.|....-
T Consensus 76 S~r~--~~y~~~~~~Li~~G~aY~--~~~~---~~~~---~i~ptY~la~vV----DD~~~---gI-ThViRg~d~~~~t 137 (240)
T cd09287 76 SDRI--ELYYEYARKLIEMGGAYV--HPRT---GSKY---RVWPTLNFAVAV----DDHLL---GV-THVLRGKDHIDNT 137 (240)
T ss_pred hccH--HHHHHHHHHHHHcCCccc--Cccc---CCcE---EEEEccccceee----ecccc---CC-CeEEechhhhhCC
Confidence 8754 2333322 1 12211111 0111 1111 234554444211 03321 23 5667888865555
Q ss_pred HHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCC
Q 020745 246 RMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASD 282 (322)
Q Consensus 246 ~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~ 282 (322)
..-+-+.+.++.+.|...|.+++- .. ++||||..
T Consensus 138 ~~q~~l~~~Lg~~~P~~~H~pll~-~~--~~kLSKR~ 171 (240)
T cd09287 138 EKQRYIYEYFGWEYPETIHWGRLK-IE--GGKLSTSK 171 (240)
T ss_pred HHHHHHHHHcCCCCCcEEeeeeec-CC--CCeecccc
Confidence 555778888999889877777664 23 58999987
No 34
>PF01921 tRNA-synt_1f: tRNA synthetases class I (K); InterPro: IPR002904 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Lysyl-tRNA synthetase (6.1.1.6 from EC) is an alpha 2 homodimer that belong to both class I and class II. In eubacteria and eukaryota lysyl-tRNA synthetases belong to class II in the same family as aspartyl tRNA synthetase. The class Ic lysyl-tRNA synthetase family is present in archaea and in a number of bacterial groups that include the alphaproteobacteria and spirochaetes[]. A refined crystal structures shows that the active site of LysU is shaped to position the substrates for the nucleophilic attack of the lysine carboxylate on the ATP alpha-phosphate. No residues are directly involved in catalysis, but a number of highly conserved amino acids and three metal ions coordinate the substrates and stabilise the pentavalent transition state. A loop close to the catalytic pocket, disordered in the lysine-bound structure, becomes ordered upon adenine binding [].; GO: 0000166 nucleotide binding, 0004824 lysine-tRNA ligase activity, 0005524 ATP binding, 0006430 lysyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IRX_A.
Probab=97.62 E-value=0.00035 Score=68.26 Aligned_cols=62 Identities=24% Similarity=0.494 Sum_probs=26.3
Q ss_pred ccccChhh---HHHHHHHHHHH-hCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCC-----CHHHHHHHH
Q 020745 236 PCAIDQDP---YFRMTRDVAPR-IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKI 300 (322)
Q Consensus 236 p~G~DQd~---~~~ltrdla~k-~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D-----~p~~i~~KI 300 (322)
|.|.|+-. -...+.+||++ +|.+.|..+.--++ ++.| ++|||||. +|.|-+.| +||.++-=+
T Consensus 239 p~GKDH~~~GGS~d~~~~I~~~i~g~~pP~~~~YE~~-~~~g-~~kmSsSk-G~~~t~~e~L~~~~PE~lr~l~ 309 (360)
T PF01921_consen 239 PFGKDHASPGGSYDTSKRIAREILGYEPPVPFPYEFF-LDKG-GGKMSSSK-GNGITPEEWLEYAPPESLRYLM 309 (360)
T ss_dssp EEEHHHHCTTSHHHHHHHHHHHCC-----EEEEE--E-EES----------------HHHHHTTS-HHHHHHHH
T ss_pred cCCCccCCCCCChhhHHHHHHHHhCCCCCCCCCeeEE-EeCC-CcccccCC-CCccCHHHHHHhcCHHHHHHHH
Confidence 77888766 77888999955 77777865543333 3455 46999999 77877665 666665444
No 35
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.61 E-value=0.00092 Score=69.06 Aligned_cols=79 Identities=15% Similarity=0.192 Sum_probs=55.0
Q ss_pred CceEEEEeeccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 020745 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 162 (322)
Q Consensus 84 ~~~~vytG~~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt 162 (322)
..+....+=.||| .|||||+..++ ++| +.+.+|..+++-|-|.-.-+.| .. ......+.+++..+|++++.
T Consensus 100 g~V~tRFaPsPtG-~LHIGharaal-ln~~~Ar~~~G~~iLRidDTDpk~~R--~~---~e~~~~I~edL~wLGl~wD~- 171 (567)
T PRK04156 100 GKVVMRFAPNPSG-PLHLGHARAAI-LNDEYAKMYGGKFILRFEDTDPRTKR--PD---PEAYDMILEDLKWLGVKWDE- 171 (567)
T ss_pred CeEEEEeCCCCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEeEccCCCCccc--ch---HHHHHHHHHHHHHcCCCCCC-
Confidence 3577888899999 89999999985 555 6666788888888765421122 11 22224567777889999875
Q ss_pred EEEeccccc
Q 020745 163 FIFSDFDYV 171 (322)
Q Consensus 163 ~I~~ns~~~ 171 (322)
++.||+..
T Consensus 172 -~~~qSdr~ 179 (567)
T PRK04156 172 -VVIQSDRL 179 (567)
T ss_pred -ccCcccCH
Confidence 56787765
No 36
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=97.54 E-value=0.00062 Score=63.07 Aligned_cols=158 Identities=15% Similarity=0.163 Sum_probs=86.5
Q ss_pred ccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 020745 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (322)
Q Consensus 93 ~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (322)
.||| .|||||+..++ +.| +.+..|..+++-|=|.-. .| .. ......+.+++..+|++.+. ++.||+..
T Consensus 9 sPtG-~lHlG~~~~al-~~~l~Ar~~~G~~iLRieDtD~--~R--~~---~~~~~~I~~dL~wlGl~wD~--~~~QS~r~ 77 (238)
T cd00807 9 EPNG-YLHIGHAKAIL-LNFGYAKKYGGRCNLRFDDTNP--EK--EE---EEYVDSIKEDVKWLGIKPYK--VTYASDYF 77 (238)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEecCCCC--cc--cc---hHHHHHHHHHHHHcCCCCCC--ceecccCH
Confidence 5898 89999999985 555 556667777777755432 11 11 22333567777789999884 56788753
Q ss_pred ccccHHHHH-HH-HcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcccccccccChhhHHHHHH
Q 020745 172 GGAFYKNMV-KV-AKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTR 249 (322)
Q Consensus 172 ~~~~~~~~~-~l-~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~~ltr 249 (322)
..|..++ ++ .+-..+-. . ..+. .-..||..|-|-.. -|.+. .+ +.|..|.|....-..-.
T Consensus 78 --~~Y~~~~~~L~~~g~aY~~--~----~~~~--~~~i~ptY~lA~vV----DD~~~---gI-ThVvRG~D~l~~t~~Q~ 139 (238)
T cd00807 78 --DQLYEYAEQLIKKGKAYVH--H----RTGD--KWCIYPTYDFAHPI----VDSIE---GI-THSLCTLEFEDRRPSYY 139 (238)
T ss_pred --HHHHHHHHHHHHcCCeecC--C----CCCC--CEEEEeccccceEe----ecccc---CC-CeEEechhhhcCCHHHH
Confidence 3343333 22 11111110 0 0011 11124444443111 03332 22 45678888554433446
Q ss_pred HHHHHhCCCCceeeecccccCCCCCCCcCCCCC
Q 020745 250 DVAPRIGYHKPALIESSFFPALQGETGKMSASD 282 (322)
Q Consensus 250 dla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~ 282 (322)
-+.+.+|.+.|..++-.-+ ..+ |.|+||+.
T Consensus 140 ~l~~aLg~~~P~~~~~~hl-n~~--g~kLSKR~ 169 (238)
T cd00807 140 WLCDALRLYRPHQWEFSRL-NLT--YTVMSKRK 169 (238)
T ss_pred HHHHHcCCCCCceeEEEEE-CCC--CCCccCcC
Confidence 6778899988854321122 445 48999997
No 37
>PRK14895 gltX glutamyl-tRNA synthetase; Provisional
Probab=97.52 E-value=0.001 Score=67.95 Aligned_cols=199 Identities=14% Similarity=0.168 Sum_probs=108.4
Q ss_pred EEEeeccC--CCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 020745 88 LYTGRGPS--SEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF 165 (322)
Q Consensus 88 vytG~~PS--g~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~ 165 (322)
+.+.|.|| | .|||||+..+++...+.+..|..+++-|-|.-. .| ... .....+..++..+|++.+.- .|
T Consensus 5 vrtRFAPSPTG-~lHiG~artAL~n~l~Ar~~gG~fiLRIEDTD~--~R-~~~----~~~~~i~~~L~WLGl~wDe~-py 75 (513)
T PRK14895 5 VITRFAPSPTG-FLHIGSARTALFNYLFARHHNGKFLLRIEDTDK--ER-STK----EAVEAIFSGLKWLGLDWNGE-VI 75 (513)
T ss_pred eeEeeCCCCCC-CccHHHHHHHHHHHHHHHHcCCEEEEEECCCCc--cc-cCh----HHHHHHHHHHHHcCCCCCCC-ce
Confidence 56778776 8 899999999965544667778888888877642 12 222 22234566777889998743 56
Q ss_pred ecccccccccHHHHH----HHHcc----cCHHHHHHh------------h--------------C------CC---C-Cc
Q 020745 166 SDFDYVGGAFYKNMV----KVAKC----VTYNKVVGI------------F--------------G------FT---G-ED 201 (322)
Q Consensus 166 ~ns~~~~~~~~~~~~----~l~k~----~t~~~~~~~------------~--------------g------~~---~-~~ 201 (322)
.||+... .|..+. +-++. +|-.++.+. + | ++ . .+
T Consensus 76 ~QSeR~~--~Y~~~a~~Li~~G~AY~CfCt~eel~~~r~~~~~~~~~~~Y~~~cr~~~~~~~~~~~~~~iR~k~p~~~~~ 153 (513)
T PRK14895 76 FQSKRNN--LYKEAALKLLQNGKAYYCFTRQEEIERQRQQALENKQHFIFNSEWRDKDPSIYPTDIKPVIRLKTPREGSI 153 (513)
T ss_pred eEeCcHH--HHHHHHHHHHHcCCeEEecCcHHHHHHHHHhhhccCCCCCCChhhcccChhhhhcCCCeeEEEEcCCCCce
Confidence 7777542 232211 11110 111111100 0 0 00 0 00
Q ss_pred -----cccccchh-------hhhcCCCCCCCccc-cc-cCCCCcccccccccChhhHHHHHHHHHHHhCCCCceeeeccc
Q 020745 202 -----HIGKVSFP-------PVQAVPSFPSSFPH-LF-SGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSF 267 (322)
Q Consensus 202 -----s~~~~~YP-------~lQaad~~~~~f~~-i~-~~~~~~~~lvp~G~DQd~~~~ltrdla~k~~~~kp~~l~~~~ 267 (322)
-.|++.++ +++=.|=.++++-. .+ -....+ ..|..|.||..+.-.-+-+.+.+|...|...|.++
T Consensus 154 ~~~D~v~G~~~~~~~~~~D~Vi~RsDG~ptY~~a~vVDD~~m~i-thVIRG~d~~~~t~~q~~l~~aLG~~~p~~~H~pl 232 (513)
T PRK14895 154 TIHDTLQGEVVIENSHIDDMVLLRADGTATYMLAVVVDDHDMGI-THIIRGDDHLTNAARQLAIYQAFGYAVPSMTHIPL 232 (513)
T ss_pred EEEeecccceecccccCCCcEEEEeCCCcchhhHHHHHHHhcCC-CEEEECchHhhhHHHHHHHHHHcCCCCCeEEEEEe
Confidence 01222222 22211111100000 00 000122 33458888887777778888999988898889898
Q ss_pred ccCCCCCCCcCCCCCCCCeeecCC------CHHHHHHHHhc
Q 020745 268 FPALQGETGKMSASDPNSAIYVTD------SAKAIKNKIIL 302 (322)
Q Consensus 268 lp~L~G~~~KMSkS~p~~aI~L~D------~p~~i~~KI~k 302 (322)
+-+++| +||||.. ++..+.+ .|+.|.+=+..
T Consensus 233 v~~~~g--~KLSKR~--g~~~i~~~r~~G~~Peai~n~la~ 269 (513)
T PRK14895 233 IHGADG--AKLSKRH--GALGIEAYKDMGYLPESLCNYLLR 269 (513)
T ss_pred EEcCCC--Ccccccc--CchhHHHHHHCCCCHHHHHHHHHH
Confidence 888876 8999997 3444432 67777666653
No 38
>PRK01611 argS arginyl-tRNA synthetase; Reviewed
Probab=97.44 E-value=0.00037 Score=71.26 Aligned_cols=62 Identities=18% Similarity=0.256 Sum_probs=43.6
Q ss_pred cccccccChhhHHHHHHHHHHHhCCCCce--eeecccccC-CCCCCCcCCCCCCCCeeecCCCHHH
Q 020745 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPA--LIESSFFPA-LQGETGKMSASDPNSAIYVTDSAKA 295 (322)
Q Consensus 233 ~lvp~G~DQd~~~~ltrdla~k~~~~kp~--~l~~~~lp~-L~G~~~KMSkS~p~~aI~L~D~p~~ 295 (322)
++-.+|.||..|+.-...+++.+|..++. .+.+..+-. +.+.|+|||||. +|.|++.|=-++
T Consensus 275 ~i~V~g~~q~~hf~~~~~~~~~lg~~~~~~~~~~h~~~glv~~~~g~KMSkR~-Gn~i~l~dll~~ 339 (507)
T PRK01611 275 VIYVVGADHHGHFKRLKAALKALGYDPDALEVLLHQMVGLVRGGEGVKMSTRA-GNVVTLDDLLDE 339 (507)
T ss_pred EEEEECCChHHHHHHHHHHHHHcCCCcccceEEEEEEEEeeECCCCCcccCCC-CceeEHHHHHHH
Confidence 33469999999999999999999976332 123322222 223368999999 899998875555
No 39
>PRK05710 glutamyl-Q tRNA(Asp) synthetase; Reviewed
Probab=97.40 E-value=0.0025 Score=61.07 Aligned_cols=69 Identities=17% Similarity=0.180 Sum_probs=47.1
Q ss_pred ccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 020745 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (322)
Q Consensus 93 ~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (322)
.||| .|||||+...+ .+| +.++.|..+++-|-|.-. .| .. ......+.+++..+|++.+.. ++.||+..
T Consensus 13 SPTG-~LHlG~~rtAL-~n~l~Ar~~~G~~iLRiEDtD~--~R-~~----~~~~~~I~~dL~wlGl~wDe~-~~~QS~r~ 82 (299)
T PRK05710 13 SPSG-PLHFGSLVAAL-GSWLDARAHGGRWLLRIEDIDP--PR-EV----PGAADAILADLEWLGLHWDGP-VLYQSQRH 82 (299)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHcCCEEEEEECcCCC--Cc-cc----hHHHHHHHHHHHHCCCCCCCC-ceEeeccH
Confidence 5898 89999999995 556 555567778888866532 12 11 233445778888999998853 45577753
No 40
>TIGR00464 gltX_bact glutamyl-tRNA synthetase, bacterial family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the bacterial and mitochondrial forms of the enzyme. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu). This model is highly specific. Proteins with positive scores below the trusted cutoff may be fragments rather than full-length sequences.
Probab=97.39 E-value=0.0014 Score=66.58 Aligned_cols=66 Identities=17% Similarity=0.171 Sum_probs=50.2
Q ss_pred cccccccChhhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCC------CHHHHHHHHhc
Q 020745 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKIIL 302 (322)
Q Consensus 233 ~lvp~G~DQd~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D------~p~~i~~KI~k 302 (322)
..|..|.||..+...-.-+.+.+|.+.|...|.+++-.++| +||||.. +++.|.+ .|+.+.+-+..
T Consensus 199 thvIrG~d~~~~t~~~~~l~~aLg~~~p~~~H~p~l~~~~g--~kLSKR~--g~~~l~~l~~~g~~p~a~~~~~~~ 270 (470)
T TIGR00464 199 THVIRGEDHISNTPKQILIYQALGWKIPVFAHLPMILDEDG--KKLSKRD--GATSIMQFKEQGYLPEALINYLAL 270 (470)
T ss_pred CEEEECchhhcCHHHHHHHHHHcCCCCCeEEEEeeeecCCC--ccccccC--CCccHHHHHHCCCCHHHHHHHHHH
Confidence 34559999998888888999999988898888888777776 8999997 3666653 56666655543
No 41
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=97.38 E-value=0.0014 Score=59.83 Aligned_cols=76 Identities=16% Similarity=0.150 Sum_probs=46.4
Q ss_pred CCceEEEEeeccCCCCcchhhhHHHH---HHHHHHHhCCceEEEEee-Cccc--cc---ccC-CCHHH-HHHHHHHHHHH
Q 020745 83 GEKFYLYTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEK--CM---WKN-LSVEE-SQRLARENAKD 151 (322)
Q Consensus 83 ~~~~~vytG~~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~Ia-D~~~--~l---~r~-~~~e~-i~~~~~~~~~~ 151 (322)
++.-...||-=|-+ .+||||+-+++ .+.++++..|..|....| |++. .. .+. .++.+ ++.+..+..++
T Consensus 19 ~~~~~y~~gpt~y~-~~HiGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~~~A~~~g~~p~e~~~~~~~~f~~~ 97 (213)
T cd00672 19 GLVTMYVCGPTVYD-YAHIGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKIIKRAREEGLSWKEVADYYTKEFFED 97 (213)
T ss_pred CCceEEEeCCccCC-CcccccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 34445567888887 89999976643 444444455766665443 3332 11 122 56655 45566677778
Q ss_pred HHHcCCCC
Q 020745 152 IIACGFDV 159 (322)
Q Consensus 152 iiA~G~dp 159 (322)
+.++|+.+
T Consensus 98 ~~~l~i~~ 105 (213)
T cd00672 98 MKALNVLP 105 (213)
T ss_pred HHHcCCCC
Confidence 88899986
No 42
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.0041 Score=63.01 Aligned_cols=94 Identities=21% Similarity=0.342 Sum_probs=57.2
Q ss_pred CceEEEEeeccCCCCcchhhhHHHH---HHHH-HHHhCCceEEEEeeCccccccc---CCC-HHHHH-------------
Q 020745 84 EKFYLYTGRGPSSEALHLGHLVPFM---FTKY-LQDAFKVPLVIQLTDDEKCMWK---NLS-VEESQ------------- 142 (322)
Q Consensus 84 ~~~~vytG~~PSg~slHlGhli~~~---~~~~-lQ~~~g~~v~I~IaD~~~~l~r---~~~-~e~i~------------- 142 (322)
....+=||+.||| .+||||+-=++ ++.. |.+.+.---.|.++|+..=+.+ +++ .+...
T Consensus 19 ~~~~v~tGisPSG-~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~lRkvp~~lp~~~~~e~Ylg~Plt~IPdP 97 (521)
T COG1384 19 DEYVVATGISPSG-LIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDPLRKVPRNLPDPEELEQYLGMPLTEIPDP 97 (521)
T ss_pred CcEEEecCcCCCC-CcccccHHHHHHHHHHHHHHHHcCCceEEEEEccCCcccccCCCCCCChHHHHHHcCCccccCCCC
Confidence 4688999999999 99999975432 3333 6666443346678888743332 133 22332
Q ss_pred -----HHHHHHHHHHH----HcCCCCCceEEEecccccccccHHHHHH
Q 020745 143 -----RLARENAKDII----ACGFDVTKTFIFSDFDYVGGAFYKNMVK 181 (322)
Q Consensus 143 -----~~~~~~~~~ii----A~G~dp~kt~I~~ns~~~~~~~~~~~~~ 181 (322)
.++..+.+.+. .+|++ ..++++++..+...|...++
T Consensus 98 ~G~~~Sya~hf~~~f~~~l~~~Gi~---~E~~s~se~Yk~G~~~~~i~ 142 (521)
T COG1384 98 FGCCDSYAEHFLRPFEEFLDEFGIE---VEFVSATELYKSGLYDEAIR 142 (521)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCc---eEEEEhHHhhhcccHHHHHH
Confidence 23333333333 47885 46778888776666666554
No 43
>PRK01406 gltX glutamyl-tRNA synthetase; Reviewed
Probab=97.16 E-value=0.0039 Score=63.42 Aligned_cols=65 Identities=15% Similarity=0.135 Sum_probs=48.5
Q ss_pred cccccccChhhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCC------CHHHHHHHHh
Q 020745 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKII 301 (322)
Q Consensus 233 ~lvp~G~DQd~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D------~p~~i~~KI~ 301 (322)
..|..|.||..+.-.-+.+.+.+|...|...|.+++-.++| +||||.. +++.+.+ .|+.+.+=+.
T Consensus 209 thvIrG~d~~~~t~~q~~l~~alG~~~p~~~H~pli~~~~g--~klSKR~--g~~~l~~l~~~G~~p~Ai~n~l~ 279 (476)
T PRK01406 209 THVIRGEDHLSNTPKQILLYEALGWEVPVFAHLPLILGPDG--KKLSKRH--GATSVEQYRDMGYLPEALLNYLA 279 (476)
T ss_pred CEEEECchhhcCHHHHHHHHHHhCCCCCeEEEeeeeeCCCC--CcccCcC--CccCHHHHHHCCCCHHHHHHHHH
Confidence 34558999888877778899999998898888887777775 8999997 3666654 5555555443
No 44
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=97.06 E-value=0.017 Score=54.67 Aligned_cols=69 Identities=19% Similarity=0.220 Sum_probs=45.9
Q ss_pred ccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 020745 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (322)
Q Consensus 93 ~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (322)
.||| .|||||+..++ ++| +-+..|..+++-|=|.-. .| ... .....+..++.-+|++.++. ++.||+..
T Consensus 8 SPtG-~lHiG~~rtAL-~n~l~Ar~~gG~~iLRiEDtD~--~R-~~~----~~~~~I~~dL~wLGl~wDe~-~~~QS~r~ 77 (272)
T TIGR03838 8 SPSG-PLHFGSLVAAL-GSYLDARAHGGRWLVRIEDLDP--PR-EVP----GAADDILRTLEAYGLHWDGE-VVYQSQRH 77 (272)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEeCcCCC--CC-CCh----HHHHHHHHHHHHcCCCCCCC-eeeeeCCH
Confidence 5898 89999999995 555 556667778887755432 12 122 22234566677789998764 45777764
No 45
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=97.04 E-value=0.0083 Score=62.32 Aligned_cols=71 Identities=24% Similarity=0.316 Sum_probs=46.4
Q ss_pred eeccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccc
Q 020745 91 GRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFD 169 (322)
Q Consensus 91 G~~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~ 169 (322)
.=.||| .|||||+..++ ++| +.+.+|..+++-|=|.-. .| +...+...+..++..+|++.+.- ++.||+
T Consensus 58 APsPtG-yLHIGharaAl-lN~l~Ar~~gG~~iLRiEDTDp--~R-----~~~e~~d~IleDL~WLGl~wDe~-~~~QSd 127 (601)
T PTZ00402 58 PPEASG-FLHIGHAKAAL-INSMLADKYKGKLVFRFDDTNP--SK-----EKEHFEQAILDDLATLGVSWDVG-PTYSSD 127 (601)
T ss_pred CCCCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEEcCCCC--cc-----cCHHHHHHHHHHHHHCCCCCCCc-eeeccc
Confidence 346788 89999999985 555 666667777776644321 01 11234445777888899998753 456777
Q ss_pred cc
Q 020745 170 YV 171 (322)
Q Consensus 170 ~~ 171 (322)
+.
T Consensus 128 r~ 129 (601)
T PTZ00402 128 YM 129 (601)
T ss_pred cH
Confidence 65
No 46
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=97.03 E-value=0.0065 Score=62.29 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=44.8
Q ss_pred ccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 020745 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (322)
Q Consensus 93 ~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (322)
.||| .|||||+-.++ ++| +.+.+|..+++-|=|.-. .| .. .++...+.+++.-+|++++. ++.||+..
T Consensus 19 sPtG-~LHiGharaAl-ln~l~Ar~~gG~~iLRiEDTDp--~R-~~----~e~~~~I~~dL~WLGl~wD~--~~~qSdr~ 87 (523)
T PLN03233 19 EPSG-YLHIGHAKAAL-LNDYYARRYKGRLILRFDDTNP--SK-EK----AEFEESIIEDLGKIEIKPDS--VSFTSDYF 87 (523)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEECCCCC--Cc-cc----hHHHHHHHHHHHHhCCCCCC--CccccccH
Confidence 5788 89999999985 556 556667777776644321 11 11 23334567777788999875 46777765
No 47
>PLN02627 glutamyl-tRNA synthetase
Probab=96.67 E-value=0.03 Score=57.63 Aligned_cols=78 Identities=13% Similarity=0.161 Sum_probs=48.5
Q ss_pred ceEEEEeeccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce-
Q 020745 85 KFYLYTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT- 162 (322)
Q Consensus 85 ~~~vytG~~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt- 162 (322)
++.+=.-=-||| .|||||+-..+ .+| +.+..|..+++-|=|--. .| ... .....+..++.-+|++.+..
T Consensus 45 ~vr~RFAPSPTG-~LHiG~aRtAL-~n~l~Ar~~gG~fiLRIEDTD~--~R-~~~----e~~~~I~~~L~WLGl~wDegp 115 (535)
T PLN02627 45 PVRVRFAPSPTG-NLHVGGARTAL-FNYLFARSKGGKFVLRIEDTDL--AR-STK----ESEEAVLRDLKWLGLDWDEGP 115 (535)
T ss_pred ceEEEeCCCCCC-CccHHHHHHHH-HHHHHHHHhCCEEEEEeCcCCC--CC-CCh----HHHHHHHHHHHHcCCCCCcCc
Confidence 333333446788 89999999985 556 556667778887755432 12 222 22234566666789988753
Q ss_pred ------EEEeccccc
Q 020745 163 ------FIFSDFDYV 171 (322)
Q Consensus 163 ------~I~~ns~~~ 171 (322)
-.|.||+-.
T Consensus 116 ~~gg~~gpy~QSeR~ 130 (535)
T PLN02627 116 DVGGEYGPYRQSERN 130 (535)
T ss_pred ccCCCCCCeeeeccH
Confidence 136777754
No 48
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=96.65 E-value=0.022 Score=57.82 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=45.8
Q ss_pred ceEEE-EeeccCCCCcchhhhHHHH---HHHHHHHhCCceEEEEee-Ccc--cccc---c-CCCHHHH-HHHHHHHHHHH
Q 020745 85 KFYLY-TGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDE--KCMW---K-NLSVEES-QRLARENAKDI 152 (322)
Q Consensus 85 ~~~vy-tG~~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~Ia-D~~--~~l~---r-~~~~e~i-~~~~~~~~~~i 152 (322)
.+.+| ||--|.+ .+||||+.+++ .+.++++..|..|....+ |++ +... . ..+++++ ..+..+..+++
T Consensus 23 ~v~~yvcgPtvy~-~~HiGHar~~v~~Dvl~R~lr~~G~~V~~v~~~tD~ddki~~~A~~~g~~~~e~~~~~~~~f~~~~ 101 (463)
T PRK00260 23 KVKMYVCGPTVYD-YAHIGHARSFVVFDVLRRYLRYLGYKVTYVRNITDIDDKIIKRANEEGESIKELTERYIAAFHEDM 101 (463)
T ss_pred cceEEEeCCccCC-CcccccchhHHHHHHHHHHHHhcCCceEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 45566 9999998 89999977643 444444455766665543 333 2222 1 2566554 44556778888
Q ss_pred HHcCCC
Q 020745 153 IACGFD 158 (322)
Q Consensus 153 iA~G~d 158 (322)
.++|+.
T Consensus 102 ~~Lgi~ 107 (463)
T PRK00260 102 DALNVL 107 (463)
T ss_pred HHcCCC
Confidence 899993
No 49
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=96.57 E-value=0.017 Score=58.19 Aligned_cols=72 Identities=26% Similarity=0.310 Sum_probs=47.3
Q ss_pred eEEE-EeeccCCCCcchhhhHH---HH-HHHHHHHhCC-ceEEEEeeCcc-cccccC----CCHHHHH-HHHHHHHHHHH
Q 020745 86 FYLY-TGRGPSSEALHLGHLVP---FM-FTKYLQDAFK-VPLVIQLTDDE-KCMWKN----LSVEESQ-RLARENAKDII 153 (322)
Q Consensus 86 ~~vy-tG~~PSg~slHlGhli~---~~-~~~~lQ~~~g-~~v~I~IaD~~-~~l~r~----~~~e~i~-~~~~~~~~~ii 153 (322)
+.+| ||-=+- +..||||.-+ +. +.++|+..++ +.++-=|+|.. |.+.|- .++.++- ++..++.+++.
T Consensus 23 V~mYvCGpTVY-d~~HIGhaRt~V~fDvl~R~L~~~Gy~V~yV~NiTDIDDKIi~rA~~~g~~~~ev~~~~i~~f~~D~~ 101 (464)
T COG0215 23 VKMYVCGPTVY-DYAHIGHARTYVVFDVLRRYLRYLGYKVTYVRNITDIDDKIINRAREEGLSIREVAERYIAAFFEDMD 101 (464)
T ss_pred EEEEecCCccC-CccccccCcceehHHHHHHHHHHhCCeEEEEeccccccHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 5555 455555 4899999554 54 4456887766 55555699987 655432 4776654 45567788888
Q ss_pred HcCCC
Q 020745 154 ACGFD 158 (322)
Q Consensus 154 A~G~d 158 (322)
|+|+-
T Consensus 102 aL~v~ 106 (464)
T COG0215 102 ALNVL 106 (464)
T ss_pred HhCCC
Confidence 88884
No 50
>PRK12558 glutamyl-tRNA synthetase; Provisional
Probab=96.33 E-value=0.043 Score=55.43 Aligned_cols=68 Identities=19% Similarity=0.317 Sum_probs=44.8
Q ss_pred ccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 020745 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (322)
Q Consensus 93 ~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (322)
-||| .|||||+...+ .+| +.+..|..+++-|-|--. .| +.++ ....+.+++..+|++.+. .|+||+..
T Consensus 10 SPTG-~lHiG~artAL-~n~l~Ar~~gG~fiLRIEDTD~--~R--s~~~---~~~~I~e~L~wLGI~~De--~y~QSer~ 78 (445)
T PRK12558 10 SPTG-YLHVGNARTAL-LNWLYARKHGGKFILRIDDTDL--ER--SKQE---YADAIAEDLKWLGINWDR--TFRQSDRF 78 (445)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEeccCCc--cc--chHH---HHHHHHHHHHHcCCCCCc--cccHHHHH
Confidence 5898 89999999985 556 556667788888766542 12 2222 223455666678998775 46677654
No 51
>PLN02859 glutamine-tRNA ligase
Probab=96.27 E-value=0.08 Score=56.71 Aligned_cols=90 Identities=17% Similarity=0.190 Sum_probs=52.6
Q ss_pred CCHHHHHHHHHh-CCceEEEEeeccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHH
Q 020745 71 RDLNDILDAYEK-GEKFYLYTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLAREN 148 (322)
Q Consensus 71 ~d~~~ll~~~~~-~~~~~vytG~~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~ 148 (322)
...+.+.+.++. +.++..=-.=.||| .|||||+-.++ ++| +.+.+|..+++-|=|.-. .| .. ..+...+
T Consensus 249 ~~~~~~~~hl~~t~g~V~tRFaPsPtG-~LHiGharaal-lN~~~Ar~~~G~~~LRieDTdp--~r-~~----~e~~~~I 319 (788)
T PLN02859 249 NTKEILEKHLKATGGKVYTRFPPEPNG-YLHIGHAKAMF-VDFGLAKERGGCCYLRFDDTNP--EA-EK----KEYIDHI 319 (788)
T ss_pred CcHHHHHHHHhhcCCceEEEeCCCCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEecCCCC--Cc-cc----hHHHHHH
Confidence 333444444443 33344444446888 89999999885 555 666667777776633321 01 11 2333345
Q ss_pred HHHHHHcCCCCCceEEEeccccc
Q 020745 149 AKDIIACGFDVTKTFIFSDFDYV 171 (322)
Q Consensus 149 ~~~iiA~G~dp~kt~I~~ns~~~ 171 (322)
..++.-+|+++++ ++.||++.
T Consensus 320 ~edL~WLG~~~d~--~~~qSd~f 340 (788)
T PLN02859 320 EEIVEWMGWEPFK--ITYTSDYF 340 (788)
T ss_pred HHHHHHcCCCCCC--cccccHhH
Confidence 6666678999875 45677765
No 52
>cd00671 ArgRS_core catalytic core domain of arginyl-tRNA synthetases. Arginyl tRNA synthetase (ArgRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. There are at least three subgroups of ArgRS. One type contains both characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. The second subtype lacks the KMSKS motif; however, it has a lysine N-terminal to the HIGH motif, which serves as the functional counterpart to the second lysine of the KMSKS motif. A third group, which is found primarily in archaea and a few bacteria, lacks both the KMSKS motif and the HIGH loop lysine.
Probab=95.97 E-value=0.013 Score=53.10 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=33.3
Q ss_pred ccccChhhHHHHHHHHHHHhCCC-Cceeee--cccccCCCCCCCcCCCCC
Q 020745 236 PCAIDQDPYFRMTRDVAPRIGYH-KPALIE--SSFFPALQGETGKMSASD 282 (322)
Q Consensus 236 p~G~DQd~~~~ltrdla~k~~~~-kp~~l~--~~~lp~L~G~~~KMSkS~ 282 (322)
.+|.||..|+.-.+.+++.+|.. ++...| ..++.+-+ |+||||..
T Consensus 164 v~g~~~~~~~~~~~~~~~~lg~~~~~~~~h~~~~~v~~~~--~~kmS~R~ 211 (212)
T cd00671 164 VVGADHHGHFKRLFAALELLGYDEAKKLEHLLYGMVNLPK--EGKMSTRA 211 (212)
T ss_pred EECCCHHHHHHHHHHHHHHcCCCCCCCeEEEEEEeEEcCC--CCCCCCCC
Confidence 69999999999999999999975 333323 24554333 48999975
No 53
>TIGR00463 gltX_arch glutamyl-tRNA synthetase, archaeal and eukaryotic family. The glutamyl-tRNA synthetases of the eukaryotic cytosol and of the Archaea are more similar to glutaminyl-tRNA synthetases than to bacterial glutamyl-tRNA synthetases. This alignment models just the eukaryotic cytosolic and archaeal forms of the enzyme. In some eukaryotes, the glutamyl-tRNA synthetase is part of a longer, multifunctional aminoacyl-tRNA ligase. In many species, the charging of tRNA(gln) proceeds first through misacylation with Glu and then transamidation. For this reason, glutamyl-tRNA synthetases may act on both tRNA(gln) and tRNA(glu).
Probab=94.78 E-value=0.074 Score=55.14 Aligned_cols=69 Identities=20% Similarity=0.373 Sum_probs=46.4
Q ss_pred ccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 020745 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (322)
Q Consensus 93 ~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (322)
.||| .|||||+..+++...+.+.+|..+++-|-|.-. .| .. ..+...+..++..+|++++. ++.||+..
T Consensus 101 sPtG-~LHiGharaalln~~~Ar~~~G~~iLRidDTDp--~R-~~----~e~~~~I~edL~wLGi~~d~--~~~qSd~~ 169 (560)
T TIGR00463 101 NPSG-PLHIGHARAAILNQYFAKKYKGKLIIRFDDTDP--RR-VK----PEAYDMILEDLDWLGVKGDE--VVYQSDRI 169 (560)
T ss_pred CCCC-CccHHHHHHHHHHHHHHHhcCCEEEEEeCcCCc--cc-cc----HHHHHHHHHHHHHcCCCCCc--cccccccH
Confidence 5788 899999999854433666677777777755432 01 11 22444567778889999875 56777765
No 54
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=94.60 E-value=0.13 Score=49.60 Aligned_cols=68 Identities=15% Similarity=0.066 Sum_probs=44.5
Q ss_pred cccccccChhhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCCee------ecCCCHHHHHHHHhc
Q 020745 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI------YVTDSAKAIKNKIIL 302 (322)
Q Consensus 233 ~lvp~G~DQd~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI------~L~D~p~~i~~KI~k 302 (322)
+.|.-|.|....--.-+-|.+.+|.+.|...|.+++-..+| +|+||++...+| --.+.|+.+.+=+.+
T Consensus 201 THViRG~D~l~~t~~Q~~L~~~Lg~~~P~~~H~pl~l~~~g--~kLSKR~~~~~i~~~~~r~~g~~~~~~l~~L~~ 274 (314)
T PF00749_consen 201 THVIRGEDLLSSTPRQILLYEALGWPPPPYAHLPLILNEDG--KKLSKRKGAKSIELGDYREWGDPPEATLNYLAR 274 (314)
T ss_dssp SEEEEEGGGTTCHHHHHHHHHHCTSSS-EEEEEEEEEETTS--SBSSTTCSHHBHHHHHHHHTT-THHHHHHHHHH
T ss_pred CeEEEccccccccHHHHHHHHHhCCCCcceEeeeeeecCCC--cEechhhccccccccccccCCCCHHHHHHHHHH
Confidence 44556766544444446678889988898888888877775 899999833342 235677777665544
No 55
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=94.15 E-value=0.39 Score=49.79 Aligned_cols=86 Identities=21% Similarity=0.279 Sum_probs=51.1
Q ss_pred HHHHHHhCCceEEEEee--ccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHH
Q 020745 76 ILDAYEKGEKFYLYTGR--GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDI 152 (322)
Q Consensus 76 ll~~~~~~~~~~vytG~--~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~i 152 (322)
+++.+++|+--.+.|=| .||| .|||||+-.++ ++| +.+.+|..+++-|=|--. .| .. ..+...+..++
T Consensus 18 ~~~dl~~~~~~~v~tRFaPsPtG-~LHiG~ar~al-~n~~~Ar~~~G~~iLRieDTd~--~r-~~----~e~~~~I~~dL 88 (554)
T PRK05347 18 IDEDLASGKHTRVHTRFPPEPNG-YLHIGHAKSIC-LNFGLAQDYGGKCNLRFDDTNP--EK-ED----QEYVDSIKEDV 88 (554)
T ss_pred HHhHHhcCCcCceEEEeCCCCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEECCCCC--Cc-CC----hHHHHHHHHHH
Confidence 34445565322244444 6788 89999999985 555 666667777776644321 11 11 22333566777
Q ss_pred HHcCCCCCceEEEeccccc
Q 020745 153 IACGFDVTKTFIFSDFDYV 171 (322)
Q Consensus 153 iA~G~dp~kt~I~~ns~~~ 171 (322)
.-+|++++.- ++.||+..
T Consensus 89 ~wLGi~~d~~-~~~qS~r~ 106 (554)
T PRK05347 89 RWLGFDWSGE-LRYASDYF 106 (554)
T ss_pred HHcCCCCCCC-ceeeecCH
Confidence 7789998432 45677665
No 56
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=94.06 E-value=0.042 Score=52.53 Aligned_cols=55 Identities=20% Similarity=0.104 Sum_probs=35.1
Q ss_pred ccccccChh-hHHHHHHHHHHHhCCC-Cce-eeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 234 LIPCAIDQD-PYFRMTRDVAPRIGYH-KPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 234 lvp~G~DQd-~~~~ltrdla~k~~~~-kp~-~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
+..+|.||. +|+....-.+.-++.. .|. .+.+-++. +.| |+|||||. +|.|++.|
T Consensus 229 i~~~G~D~~~~h~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~-g~KmSKS~-gn~v~~~d 286 (312)
T cd00668 229 WHLIGKDILRGWANFWITMLVALFGEIPPKNLLVHGFVL-DEG-GQKMSKSK-GNVIDPSD 286 (312)
T ss_pred EEEEecchhhhHHHHHHHHHHHhcCCCCcceeEECcEEE-cCC-CccccccC-CCcCCHHH
Confidence 447899998 6765555455545544 232 22345554 333 48999999 89999865
No 57
>PTZ00437 glutaminyl-tRNA synthetase; Provisional
Probab=94.05 E-value=0.12 Score=53.52 Aligned_cols=78 Identities=18% Similarity=0.124 Sum_probs=49.2
Q ss_pred ceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 020745 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (322)
Q Consensus 85 ~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I 164 (322)
++..=..=.||| .|||||+..+++...+.+.+|..+++-|=|.-. .| ....+...+.+++.-+|++++..
T Consensus 51 kv~tRFaPsPtG-~LHiGharaalln~~~Ar~~gG~~iLRiEDTDp--~r-----~~~e~~~~I~~dL~wLGi~~D~~-- 120 (574)
T PTZ00437 51 KPYFRFPPEPNG-FLHIGHAKSMNLNFGSARAHGGKCYLRYDDTNP--ET-----EEQVYIDAIMEMVKWMGWKPDWV-- 120 (574)
T ss_pred cEEEEeCCCCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEECCCCc--cc-----cChHHHHHHHHHHHHcCCCCCCC--
Confidence 444444556888 899999999864433666667777777644321 01 11233445667777889998764
Q ss_pred Eecccccc
Q 020745 165 FSDFDYVG 172 (322)
Q Consensus 165 ~~ns~~~~ 172 (322)
+.+|++..
T Consensus 121 ~~qS~y~~ 128 (574)
T PTZ00437 121 TFSSDYFD 128 (574)
T ss_pred CcCchhHH
Confidence 45676653
No 58
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=93.84 E-value=0.23 Score=50.11 Aligned_cols=68 Identities=16% Similarity=0.271 Sum_probs=45.8
Q ss_pred ccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 020745 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (322)
Q Consensus 93 ~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (322)
-||| .|||||+...+ .+| +-+..|..+++-|=|--. .| ... .....+..++.-+|++.+. .+.||+..
T Consensus 7 SPTG-~LHiG~artAL-~n~l~Ar~~gG~fiLRiEDTD~--~R-~~~----e~~~~I~~~L~WlGl~wDe--~y~QSeR~ 75 (433)
T PRK12410 7 SPTG-DMHIGNLRAAI-FNYIVAKQQNEDFLIRIEDTDK--ER-NIE----GKDKEILEILNLFGISWDK--LVYQSENL 75 (433)
T ss_pred CCCC-cccHHHHHHHH-HHHHHHHHcCCEEEEEeCcCCC--Cc-CCh----HHHHHHHHHHHHcCCCCCC--CeehhccH
Confidence 4898 89999999985 555 566677788887755432 12 222 2223456666678999886 47788764
No 59
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=93.81 E-value=0.14 Score=52.19 Aligned_cols=69 Identities=16% Similarity=0.295 Sum_probs=45.9
Q ss_pred ccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 020745 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (322)
Q Consensus 93 ~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (322)
.||| .|||||+...+ .+| +.+++|..+++-|=|.-. .| ...+ ....+..++.-+|++.+.. ++.||+..
T Consensus 17 sPtG-~LHiG~artAl-~N~~~Ar~~~G~fiLRiEDTD~--~R-~~~e----~~~~I~~~L~WLGl~wde~-~~~QS~r~ 86 (472)
T COG0008 17 SPTG-YLHIGHARTAL-LNYLYARKYGGKFILRIEDTDP--ER-ETPE----AEDAILEDLEWLGLDWDEG-PYYQSERF 86 (472)
T ss_pred CCCC-ccchHHHHHHH-HHHHHHHHhCCEEEEEecCCCC--CC-CCHH----HHHHHHHHHHhcCCCCCCc-eeehhhhH
Confidence 4688 89999999985 666 556677777887744321 12 2222 2224566667789999886 67788765
No 60
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=93.79 E-value=0.26 Score=50.78 Aligned_cols=70 Identities=19% Similarity=0.236 Sum_probs=44.1
Q ss_pred ccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 020745 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (322)
Q Consensus 93 ~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (322)
.||| .|||||+-.+++...+.+.+|..+++-|=|.-. .| ... ++...+.+++.-+|++++.. ++.||+..
T Consensus 8 sPtG-~LHiG~ar~al~n~~~A~~~~G~~iLRieDTd~--~r-~~~----e~~~~I~~dL~wLG~~~d~~-~~~qS~~~ 77 (522)
T TIGR00440 8 EPNG-YLHIGHAKSICLNFGYAKYYNGTCNLRFDDTNP--VK-EDP----EYVESIKRDVEWLGFKWEGK-IRYSSDYF 77 (522)
T ss_pred CCCC-cccHHHHHHHHHHHHHHHHhCCEEEEEEcCCCc--cc-CCh----HHHHHHHHHHHHcCCCCCCC-ceEccccH
Confidence 5898 899999999854433666677777776644321 11 122 23334667777789998432 45577765
No 61
>PLN02907 glutamate-tRNA ligase
Probab=93.66 E-value=0.22 Score=53.28 Aligned_cols=69 Identities=25% Similarity=0.331 Sum_probs=45.3
Q ss_pred eccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecccc
Q 020745 92 RGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY 170 (322)
Q Consensus 92 ~~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~ 170 (322)
=.||| .|||||.-.++ ++| +.+.+|..+++-|=|.-. .| ... ++...+..++.-+|+++++. +.||++
T Consensus 220 PsPtG-~LHiG~ar~al-~n~~~Ar~~~G~~iLR~eDTdp--~r-~~~----e~~~~I~~dl~wLG~~~d~~--~~qS~r 288 (722)
T PLN02907 220 PEPSG-YLHIGHAKAAL-LNQYFARRYKGKLIVRFDDTNP--SK-ESD----EFVENILKDIETLGIKYDAV--TYTSDY 288 (722)
T ss_pred CCCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEecCCCC--Cc-CCh----HHHHHHHHHHHHcCCCCCCc--cccccc
Confidence 35788 89999999985 555 666677777776644321 11 122 23334667777789998864 577777
Q ss_pred c
Q 020745 171 V 171 (322)
Q Consensus 171 ~ 171 (322)
.
T Consensus 289 ~ 289 (722)
T PLN02907 289 F 289 (722)
T ss_pred H
Confidence 5
No 62
>PRK14703 glutaminyl-tRNA synthetase/YqeY domain fusion protein; Provisional
Probab=92.73 E-value=0.41 Score=51.51 Aligned_cols=85 Identities=18% Similarity=0.283 Sum_probs=50.8
Q ss_pred HHHHHhCCceEEEEee--ccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHH
Q 020745 77 LDAYEKGEKFYLYTGR--GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDII 153 (322)
Q Consensus 77 l~~~~~~~~~~vytG~--~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~ii 153 (322)
.+.++.|+.-.+.|=| .||| .|||||+-.++ ++| +.+.+|..+++-|=|--. .| .. ..+...+..++.
T Consensus 21 ~~~l~~g~~~~v~tRFaPsPtG-~lHiGhar~al-ln~~~A~~~~G~~~LR~eDTd~--~r-~~----~e~~~~I~~dl~ 91 (771)
T PRK14703 21 EEDLEAGRYPRVVTRFPPEPNG-YLHIGHAKSIL-LNFGIARDYGGRCHLRMDDTNP--ET-ED----TEYVEAIKDDVR 91 (771)
T ss_pred HHHHhcCCCCceEEEeCcCCCC-cccHHHHHHHH-HHHHHHHHhCCEEEEEeCCCCC--Cc-CC----hHHHHHHHHHHH
Confidence 3445554322344444 5788 89999999985 555 666667777776644321 01 11 223334666777
Q ss_pred HcCCCCCceEEEeccccc
Q 020745 154 ACGFDVTKTFIFSDFDYV 171 (322)
Q Consensus 154 A~G~dp~kt~I~~ns~~~ 171 (322)
-+|++++.. ++.||++.
T Consensus 92 wLG~~wd~~-~~~qS~~~ 108 (771)
T PRK14703 92 WLGFDWGEH-LYYASDYF 108 (771)
T ss_pred HcCCCCCCC-ceEeecCH
Confidence 789987643 45677765
No 63
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=92.00 E-value=0.47 Score=50.36 Aligned_cols=76 Identities=24% Similarity=0.337 Sum_probs=47.5
Q ss_pred CceEEEEee-ccCCCCcchhhhHHHH---HHHHHHHhCCceEEEEeeCcc-c--ccc---c-CCCHHH-HHHHHHHHHHH
Q 020745 84 EKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE-K--CMW---K-NLSVEE-SQRLARENAKD 151 (322)
Q Consensus 84 ~~~~vytG~-~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~IaD~~-~--~l~---r-~~~~e~-i~~~~~~~~~~ 151 (322)
++++|.|++ -|+| .+||||+.+++ .+.++++.-|..|....|+++ + ... + ..++.+ +.+++.++.+.
T Consensus 2 ~~~~itt~~py~ng-~~HiGH~~~~l~aDv~aR~~r~~G~~V~~~~g~D~hG~~i~~~A~~~g~~p~e~~~~~~~~~~~~ 80 (673)
T PRK00133 2 RKILVTCALPYANG-PIHLGHLVEYIQADIWVRYQRMRGHEVLFVCADDAHGTPIMLKAEKEGITPEELIARYHAEHKRD 80 (673)
T ss_pred CCEEEeCCCCCCCC-cccccchHHHHHHHHHHHHHHhcCCeeEEeCccCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 467888888 6898 89999988753 334444445766666655443 3 111 1 145544 45566667777
Q ss_pred HHHcCCCCC
Q 020745 152 IIACGFDVT 160 (322)
Q Consensus 152 iiA~G~dp~ 160 (322)
+.++|++.+
T Consensus 81 ~~~l~i~~d 89 (673)
T PRK00133 81 FAGFGISFD 89 (673)
T ss_pred HHHhCCCCC
Confidence 777877644
No 64
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=91.33 E-value=0.2 Score=52.18 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=46.6
Q ss_pred cccccChhhHHHHHHHHHHHhCCCCce-eeecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhc
Q 020745 235 IPCAIDQDPYFRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIIL 302 (322)
Q Consensus 235 vp~G~DQd~~~~ltrdla~k~~~~kp~-~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k 302 (322)
-.+|.||..|+.....+++.+|.+.|. +.++.+-. ..+ .|||||. ++.|.+.|=.+++.++..+
T Consensus 332 ~V~g~~q~~h~~~v~~~l~~lG~~~~~~l~h~~~~~-V~~--~kmSkr~-Gn~V~~~dll~~~~~ra~~ 396 (566)
T TIGR00456 332 YVWGSDHHLHIAQFFAILEKLGFYKKKELIHLNFGM-VPL--GSMKTRR-GNVISLDNLLDEASKRAGN 396 (566)
T ss_pred EEecCcHHHHHHHHHHHHHHcCCCCCCceEEEEEEE-EEC--CCCCccC-CceeeHHHHHHHHHHHHHH
Confidence 359999999999999999999986663 33332211 122 6999999 8999999877766554433
No 65
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=91.23 E-value=0.2 Score=48.65 Aligned_cols=55 Identities=22% Similarity=0.183 Sum_probs=31.6
Q ss_pred ccccccChhh-HHHHHHHHHHHhCCCCc--eeeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 234 LIPCAIDQDP-YFRMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 234 lvp~G~DQd~-~~~ltrdla~k~~~~kp--~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
+...|.|+-. |+--.--.+--+....| ..+.+.++....| +|||||. +|.|++.|
T Consensus 255 ~~~~GkDii~~wf~~~~~~~~~~~~~~p~~~~~~hg~~~~~~g--~KmSKS~-gn~i~~~~ 312 (338)
T cd00818 255 FILEGSDQTRGWFYSLLLLSTALFGKAPYKNVIVHGFVLDEDG--RKMSKSL-GNYVDPQE 312 (338)
T ss_pred EEeecchHHhHHHHHHHHHHHHhcCCCccceEEEEeeEECCCC--CCCCCCC-CCcCCHHH
Confidence 4467999875 33222111111222233 3334666644555 8999999 89999865
No 66
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=91.02 E-value=0.52 Score=51.17 Aligned_cols=76 Identities=17% Similarity=0.212 Sum_probs=47.7
Q ss_pred CCceEEEEeeccC--CCCcchhhhHHHH---HHHHHHHhCCceEEEEee-Cccccc-----cc-CCCH-HHHHHHHHHHH
Q 020745 83 GEKFYLYTGRGPS--SEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKCM-----WK-NLSV-EESQRLARENA 149 (322)
Q Consensus 83 ~~~~~vytG~~PS--g~slHlGhli~~~---~~~~lQ~~~g~~v~I~Ia-D~~~~l-----~r-~~~~-e~i~~~~~~~~ 149 (322)
++++++..|+ |+ | .|||||+.... ++.++|+.-|..|....| |.|+.- .+ ..+. +-+.++..++.
T Consensus 31 ~~~~~i~~~p-Py~nG-~lHiGH~~~~~~~Dii~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~~~~~~~~~~~~~~ 108 (805)
T PRK00390 31 SKKYYVLDMF-PYPSG-GLHMGHVRNYTIGDVIARYKRMQGYNVLHPMGWDAFGLPAENAAIKTGTHPAEWTYENIANMK 108 (805)
T ss_pred CCCEEEEccC-CCCCC-CcchhhhHHHHHHHHHHHHHHhcCCcccccCccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3578888887 66 7 89999988743 444566665766665554 444411 11 2333 33555666677
Q ss_pred HHHHHcCCCCC
Q 020745 150 KDIIACGFDVT 160 (322)
Q Consensus 150 ~~iiA~G~dp~ 160 (322)
+++.++|+..+
T Consensus 109 ~~~~~lGi~~D 119 (805)
T PRK00390 109 KQLKSLGFSYD 119 (805)
T ss_pred HHHHHhCCccc
Confidence 77888998654
No 67
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=90.86 E-value=0.69 Score=47.55 Aligned_cols=64 Identities=22% Similarity=0.392 Sum_probs=43.6
Q ss_pred eeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 020745 91 GRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 162 (322)
Q Consensus 91 G~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt 162 (322)
-=+||| .|||||.-..++..++|.+|...+++..-|--- ...-++.+. .+.+++--+|+.|++.
T Consensus 206 PPEpSG-yLHIGHAKAALLNqYfa~~~~G~LIvRFDDTNP----aKE~~eFe~---~IleDl~~LgIkpd~~ 269 (712)
T KOG1147|consen 206 PPEPSG-YLHIGHAKAALLNQYFAQAYQGKLIVRFDDTNP----AKENEEFED---VILEDLSLLGIKPDRV 269 (712)
T ss_pred CCCCCc-eeehhhHHHHHHHHHHHHhcCceEEEEecCCCc----chhhHHHHH---HHHHHHHHhCcCccee
Confidence 347898 999999998877778999988877775433211 023333443 3566676789998764
No 68
>cd02156 nt_trans nucleotidyl transferase superfamily. nt_trans (nucleotidyl transferase) This superfamily includes the class I amino-acyl tRNA synthetases, pantothenate synthetase (PanC), ATP sulfurylase, and the cytidylyltransferases, all of which have a conserved dinucleotide-binding domain.
Probab=90.35 E-value=0.9 Score=36.18 Aligned_cols=63 Identities=22% Similarity=0.256 Sum_probs=35.5
Q ss_pred EEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCC
Q 020745 89 YTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFD 158 (322)
Q Consensus 89 ytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~d 158 (322)
++|-.+ +.+|+||+..+.....++ + .+++.++|.+....+ .....++++.....+.++-+|.+
T Consensus 3 ~~~G~F--dp~H~GH~~l~~~a~~~~---d-~~i~~i~~~~~~~~~-~~~~~~~~R~~~l~~~~~~~G~~ 65 (105)
T cd02156 3 RFPGEP--GYLHIGHAKLICRAKGIA---D-QCVVRIDDNPPVKVW-QDPHELEERKESIEEDISVCGED 65 (105)
T ss_pred EeCCCC--CCCCHHHHHHHHHHHHhC---C-cEEEEEcCCCccccc-CChHHHHHHHHHHHHHHHHHHhh
Confidence 344444 589999998653333343 3 477888888753322 34555555554444444445553
No 69
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=89.68 E-value=0.24 Score=48.89 Aligned_cols=55 Identities=18% Similarity=0.090 Sum_probs=32.8
Q ss_pred ccccccChhhHHH-HHHHHHHHhCCCCc--eeeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 234 LIPCAIDQDPYFR-MTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 234 lvp~G~DQd~~~~-ltrdla~k~~~~kp--~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
+...|.||....- ...-.+..+....| ..+.+-++..+.| +|||||. +|.|++.|
T Consensus 299 ~~~~G~D~~~~h~~~~l~~~~~~~g~~p~~~v~~hg~v~~~~g--~KMSKS~-Gn~v~~~d 356 (382)
T cd00817 299 LLVTGHDIIFFWVARMIMRGLKLTGKLPFKEVYLHGLVRDEDG--RKMSKSL-GNVIDPLD 356 (382)
T ss_pred eeeeecCcCchHHHHHHHHHHHhhCCCchHHeEeeeeEECCCC--CCccccC-CCCCCHHH
Confidence 4468888865332 22222223333334 3344666655665 8999999 89998765
No 70
>PLN02224 methionine-tRNA ligase
Probab=88.66 E-value=1 Score=47.51 Aligned_cols=94 Identities=11% Similarity=0.120 Sum_probs=55.7
Q ss_pred hcCceeecCCHHHHHHHHHhCCceEEEEee-ccCCCCcchhhhHHHH---HHHHHHHhCCceEEEEe-eCccc--ccc--
Q 020745 63 RRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQL-TDDEK--CMW-- 133 (322)
Q Consensus 63 ~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~-~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~I-aD~~~--~l~-- 133 (322)
.|.|++..++.|.=. ..+++++|-|+. -|+| .+||||+.+.+ .+.++++.-|..|...- .|.|+ ...
T Consensus 51 ~~~~~~~~~~~~~~~---~~~~~~~ittp~pY~NG-~~HiGHa~~~~~aDviaR~~r~~G~~V~fv~G~DehG~kI~~~A 126 (616)
T PLN02224 51 KRALYCTSSSQESTV---DEADTFVLTTPLYYVNA-PPHMGSAYTTIAADSIARFQRLLGKKVIFITGTDEHGEKIATSA 126 (616)
T ss_pred cceeeccCCCcccCC---CCCCeEEEeCCCCCCCC-CCchhccHHHHHHHHHHHHHHhcCCceEEecCcCCcchHHHHHH
Confidence 455666666555322 235678888888 7888 89999988753 33334444465555543 46664 111
Q ss_pred -c-CCCH-HHHHHHHHHHHHHHHHcCCCCC
Q 020745 134 -K-NLSV-EESQRLARENAKDIIACGFDVT 160 (322)
Q Consensus 134 -r-~~~~-e~i~~~~~~~~~~iiA~G~dp~ 160 (322)
+ ..++ +-+++++.+..+.+.++|++++
T Consensus 127 ~~~g~~p~e~~~~~~~~~~~~~~~l~I~~D 156 (616)
T PLN02224 127 AANGRNPPEHCDIISQSYRTLWKDLDIAYD 156 (616)
T ss_pred HHcCCChHHHHHHHHHHHHHHHHHcCCCCC
Confidence 1 1333 4455566666667777887664
No 71
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=88.28 E-value=0.24 Score=47.52 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=31.3
Q ss_pred ccccChhhHH----HHHHHHHHHhCC---CCce-eeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 236 PCAIDQDPYF----RMTRDVAPRIGY---HKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 236 p~G~DQd~~~----~ltrdla~k~~~---~kp~-~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
.+|.||-++. .+-..++...+. +.|. .+.+-++. +.| +|||||. +|+|++.|
T Consensus 229 v~G~D~i~~h~~~~~~~~~~l~~~g~~~~~~~~~~~~~g~v~-~~g--~KmSkS~-Gn~v~~~d 288 (314)
T cd00812 229 IGGKEHAPNHLLYSRFNHKALFDEGLVTDEPPKGLIVQGMVL-LEG--EKMSKSK-GNVVTPDE 288 (314)
T ss_pred ecchhHHHHHHHHHHHHHHHHcCcccccccCcHHheecceEe-cCc--cccCCcC-CCCCCHHH
Confidence 5899985533 233444444553 3332 22344443 554 8999999 89999876
No 72
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=88.13 E-value=1.5 Score=43.62 Aligned_cols=67 Identities=21% Similarity=0.279 Sum_probs=33.9
Q ss_pred ccCCCCcchhhhHHHH---HHHHHHHhCCceEEEE-eeCcccc-cc----cC-CCHHH-HHHHHHHHHHHHHHcCCCCC
Q 020745 93 GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDEKC-MW----KN-LSVEE-SQRLARENAKDIIACGFDVT 160 (322)
Q Consensus 93 ~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~-IaD~~~~-l~----r~-~~~e~-i~~~~~~~~~~iiA~G~dp~ 160 (322)
=|.| .+||||+.+.+ ...+++++-|..+... =+|.|+. .. +. .++++ +.++.....+.+.++|++.+
T Consensus 9 Y~Ng-~lHlGH~~~~l~ADv~aR~~r~~G~~v~~~tGtDehG~~i~~~A~~~g~~p~~~~~~~~~~~~~~~~~~~I~~D 86 (391)
T PF09334_consen 9 YPNG-DLHLGHLYPYLAADVLARYLRLRGHDVLFVTGTDEHGSKIETAAEKQGIDPEEFCDKYSAKFKELLEALNISYD 86 (391)
T ss_dssp ETSS-S-BHHHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-SSHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHTT---S
T ss_pred CCCC-CCCCChhHHHHHHHHHHHHHhhcccceeeEEecchhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 3677 79999988764 3333444447666554 4677752 21 12 56655 44444555556666776654
No 73
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=87.93 E-value=1.4 Score=45.90 Aligned_cols=74 Identities=19% Similarity=0.225 Sum_probs=44.3
Q ss_pred CceEEEEee-ccCCCCcchhhhHHHH---HHHHHHHhCCceEEEEe-eCcccc-c-c---c-CCCHHH-HHHHHHHHHHH
Q 020745 84 EKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQL-TDDEKC-M-W---K-NLSVEE-SQRLARENAKD 151 (322)
Q Consensus 84 ~~~~vytG~-~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~I-aD~~~~-l-~---r-~~~~e~-i~~~~~~~~~~ 151 (322)
++++|-|.+ =|+| .+||||+.+.+ ...++|+.-|..++.+- +|.|+. + . . ..++++ +.++..+....
T Consensus 5 ~~~~VTtalpY~Ng-~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~~g~tP~el~d~~~~~~~~~ 83 (558)
T COG0143 5 KKILVTTALPYPNG-PPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEKEGITPQELVDKNHEEFKEL 83 (558)
T ss_pred CcEEEecCCCCCCC-CcchhhHHHHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 455665555 3676 89999988654 34456666576665544 455552 1 1 1 256665 45555566666
Q ss_pred HHHcCCC
Q 020745 152 IIACGFD 158 (322)
Q Consensus 152 iiA~G~d 158 (322)
+.+++++
T Consensus 84 ~~~l~Is 90 (558)
T COG0143 84 FKALNIS 90 (558)
T ss_pred HHHhCCc
Confidence 7776664
No 74
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=87.05 E-value=0.76 Score=47.86 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=43.5
Q ss_pred cccccChhhHHHHHHHHHHHhCCCCceee-e--cccccCCCCCCCcCCCCCCCCeeecCCCHHHHHH
Q 020745 235 IPCAIDQDPYFRMTRDVAPRIGYHKPALI-E--SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 298 (322)
Q Consensus 235 vp~G~DQd~~~~ltrdla~k~~~~kp~~l-~--~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~ 298 (322)
-.+|.||..|+.-...+++.+|+..+.-+ | .-++- +. |+||||-. ++.|.|+|=-+++..
T Consensus 329 yV~g~dq~~h~~~l~~~~~~lg~~~~~~l~h~~~g~V~-~~--g~kmStR~-G~~v~l~dLldea~~ 391 (562)
T PRK12451 329 YVVGPEQSLHFNQFFTVLKKLGYTWVDGMEHVPFGLIL-KD--GKKMSTRK-GRVVLLEEVLEEAIE 391 (562)
T ss_pred EEeCCcHHHHHHHHHHHHHHcCCCcccCeEEEeeeeEe-cC--CCCCcCCC-CCeeEHHHHHHHHHH
Confidence 36999999999999999999997533212 2 22332 34 47999998 899999986555444
No 75
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=85.39 E-value=1.7 Score=44.73 Aligned_cols=67 Identities=15% Similarity=0.072 Sum_probs=37.8
Q ss_pred ccCCCCcchhhhHHHH---HHHHHHHhCCceEEEEe-eCccc--cc---ccC-CCHHHHHH-HHHHHHHHHHHcCCCCC
Q 020745 93 GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQL-TDDEK--CM---WKN-LSVEESQR-LARENAKDIIACGFDVT 160 (322)
Q Consensus 93 ~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~I-aD~~~--~l---~r~-~~~e~i~~-~~~~~~~~iiA~G~dp~ 160 (322)
-|+| .+||||+.+++ .+.++++..|..|.... .|.+. .. .+. .+++++.+ +..+..+++.++|++++
T Consensus 9 ~~ng-~lHiGH~~~~~~aDvl~R~~r~~G~~V~~v~g~D~~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D 86 (530)
T TIGR00398 9 YANG-KPHLGHAYTTILADVYARYKRLRGYEVLFVCGTDEHGTKIELKAEQEGLTPKELVDKYHEEFKDDWKWLNISFD 86 (530)
T ss_pred CCCC-CcccchhHHHHHHHHHHHHHHhcCCeEEEecccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3687 89999988753 33444455576666543 34442 11 112 56655433 44456666777777543
No 76
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=85.24 E-value=2.1 Score=44.26 Aligned_cols=72 Identities=22% Similarity=0.272 Sum_probs=41.0
Q ss_pred EEEeeccC--CCCcchhhhHHH----HHHHHHHHhCCceEEEEe-eCcccc-c----ccC-CCHHH-HHHHHHHHHHHHH
Q 020745 88 LYTGRGPS--SEALHLGHLVPF----MFTKYLQDAFKVPLVIQL-TDDEKC-M----WKN-LSVEE-SQRLARENAKDII 153 (322)
Q Consensus 88 vytG~~PS--g~slHlGhli~~----~~~~~lQ~~~g~~v~I~I-aD~~~~-l----~r~-~~~e~-i~~~~~~~~~~ii 153 (322)
+.|.-=|+ | .+||||+.+. .++.++++.-|..|.... .|.|.. + .+. .+.++ +++++....+++.
T Consensus 6 ~i~~~~py~ng-~~HiGH~~~~~~~~D~~~R~~r~~G~~v~~~~g~d~~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 84 (556)
T PRK12268 6 LITSAWPYANG-PLHLGHLAGSGLPADVFARYQRLKGNEVLFVSGSDEHGTPIELAAKKEGVTPQELADKYHEEHKEDFK 84 (556)
T ss_pred EEecCCCCCCC-CccccccccchhHHHHHHHHHHhcCCceEecCcCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34444454 6 8999998765 233344444476666644 355531 1 112 45544 4556666777778
Q ss_pred HcCCCCC
Q 020745 154 ACGFDVT 160 (322)
Q Consensus 154 A~G~dp~ 160 (322)
++|++++
T Consensus 85 ~l~i~~d 91 (556)
T PRK12268 85 KLGISYD 91 (556)
T ss_pred HcCCcCC
Confidence 8887654
No 77
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=85.10 E-value=4.6 Score=44.16 Aligned_cols=77 Identities=19% Similarity=0.215 Sum_probs=46.8
Q ss_pred CCceEEEEeec-cCCCCcchhhhHHHH---HHHHHHHhCCceEEEEee-Cccccc-----cc-CCCH-HHHHHHHHHHHH
Q 020745 83 GEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKCM-----WK-NLSV-EESQRLARENAK 150 (322)
Q Consensus 83 ~~~~~vytG~~-PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~Ia-D~~~~l-----~r-~~~~-e~i~~~~~~~~~ 150 (322)
++++++..|+= ||| .|||||+.... ++.++++.-|..|....| |.|+.- .+ ..+. +-+.++..++.+
T Consensus 28 k~k~~v~~~pPy~nG-~lHiGH~~~~~~~Dvi~Ry~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~~~~~~~ 106 (842)
T TIGR00396 28 KPKYYILDMFPYPSG-ALHMGHVRNYTITDVLSRYYRMKGYNVLHPMGWDAFGLPAENAAIKRGIHPAKWTYENIANMKK 106 (842)
T ss_pred CCCEEEEcCCCCCCC-ccccchhHHHHHHHHHHHHHHhcCCceeccCCcCCCChHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 35578887743 346 89999988743 444566655776666555 444421 11 2333 335556667777
Q ss_pred HHHHcCCCCC
Q 020745 151 DIIACGFDVT 160 (322)
Q Consensus 151 ~iiA~G~dp~ 160 (322)
++.++|+..+
T Consensus 107 ~~~~lG~~~D 116 (842)
T TIGR00396 107 QLQALGFSYD 116 (842)
T ss_pred HHHHhCCccc
Confidence 8888897543
No 78
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=84.41 E-value=0.55 Score=47.82 Aligned_cols=53 Identities=23% Similarity=0.207 Sum_probs=31.9
Q ss_pred cccccChhhHHHHH-HHHHHHhCCCCc-eeeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 235 IPCAIDQDPYFRMT-RDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 235 vp~G~DQd~~~~lt-rdla~k~~~~kp-~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
...|.||-.+.-+. .-++..++.+.| ..+++-++- +.| +|||||. +|.|++.|
T Consensus 258 ~~~G~D~~~~h~~~~~a~~~a~~~~~p~~~~~~g~v~-~~G--~KMSKS~-GN~i~~~d 312 (511)
T PRK11893 258 HLIGKDILRFHAVYWPAFLMAAGLPLPKRVFAHGFLT-LDG--EKMSKSL-GNVIDPFD 312 (511)
T ss_pred eEecccccccchhHHHHHHHhCCCCCCCEEEeeccEE-ECC--eeecccC-CcEEcHHH
Confidence 46899988742221 111122244445 344455664 454 8999999 89999865
No 79
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=83.55 E-value=0.81 Score=47.96 Aligned_cols=55 Identities=25% Similarity=0.241 Sum_probs=30.5
Q ss_pred ccccccChhh-HHHHHHHHHHHhCCCCc--eeeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 234 LIPCAIDQDP-YFRMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 234 lvp~G~DQd~-~~~ltrdla~k~~~~kp--~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
+..-|.||-. |+....-+...+....| .++.+-++-..+| +|||||. +|.|.+.+
T Consensus 517 ~~~~G~D~~~~W~~~~l~~~~~l~~~~pfk~v~~hG~vld~~G--~KMSKS~-GNvi~p~~ 574 (601)
T PF00133_consen 517 LYIEGKDQIRGWFQSSLFLSVALFGKEPFKKVITHGFVLDEDG--RKMSKSK-GNVIDPED 574 (601)
T ss_dssp EEEEEGGGTTTHHHHHHHHHHHHSSSTSBSEEEEE--EEETTS--SB-BTTT-TB--BHHH
T ss_pred cccCCccchhhHHHHhHhhccccccCCchheeeecccccccce--eecccCC-CcccCHHH
Confidence 4467888876 54444444444444444 3455666666665 9999998 88886543
No 80
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=83.13 E-value=1.5 Score=45.90 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=50.9
Q ss_pred cccccccChhhHHHHHHHHHHHhCCCCce-eeecccccCCC-CCCCcCCCCCCCCeeecCCCHHHHHHHH
Q 020745 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPA-LIESSFFPALQ-GETGKMSASDPNSAIYVTDSAKAIKNKI 300 (322)
Q Consensus 233 ~lvp~G~DQd~~~~ltrdla~k~~~~kp~-~l~~~~lp~L~-G~~~KMSkS~p~~aI~L~D~p~~i~~KI 300 (322)
++--+|.||..|+.-.+-+++.+++..+. .+.+..+.... |.+.||||-. ++.|.|.|=-+++.+|.
T Consensus 337 ~IyV~gadq~~~~~ql~~~l~~~g~~~~~~~~~h~~~~l~~~~~g~kmStR~-G~~vtl~dllde~~era 405 (577)
T COG0018 337 LIYVLGADQHGHFKQLKAVLELLGYGPDKEVLLHQGVGLVRGGEGVKMSTRA-GNVVTLDDLLDEAGERA 405 (577)
T ss_pred EEEEeCCcchhHHHHHHHHHHHhcCCCccceEEEEEEeeeECCCCccccccC-CceEEHHHHHHHHHHHh
Confidence 44469999999999999999999987663 34444344433 3468999998 89999999887777544
No 81
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=82.93 E-value=2 Score=41.17 Aligned_cols=66 Identities=14% Similarity=0.060 Sum_probs=37.0
Q ss_pred cCCCCcchhhhHHHH---HHHHHHHhCCceEEEEe-eCcccc-c-c---cC-CCHHHHHH-HHHHHHHHHHHcCCCCC
Q 020745 94 PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQL-TDDEKC-M-W---KN-LSVEESQR-LARENAKDIIACGFDVT 160 (322)
Q Consensus 94 PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~I-aD~~~~-l-~---r~-~~~e~i~~-~~~~~~~~iiA~G~dp~ 160 (322)
|+| .+||||+.+.. .+.++++..|..|.... .|.|.. + . +. .+++++.+ +...+.+++.++|++++
T Consensus 11 ~ng-~~HlGH~~~~~~~Dv~~R~~r~~G~~V~~~~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~l~~LgI~~D 87 (319)
T cd00814 11 VNG-VPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQKAEEEGVTPQELCDKYHEIFKDLFKWLNISFD 87 (319)
T ss_pred CCC-CcchhhHHHHHHHHHHHHHHHhCCCcccccCccCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCcCC
Confidence 457 89999988753 33334444465555433 355531 1 1 11 56655433 44456667778888755
No 82
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=82.81 E-value=1.4 Score=42.23 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=30.4
Q ss_pred ccccChhhHHHHH-HHHHHHhCCCCcee-eecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 236 PCAIDQDPYFRMT-RDVAPRIGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 236 p~G~DQd~~~~lt-rdla~k~~~~kp~~-l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
.+|.|+-.+.-+. --+..-.+.+.|.. +.+-++ .+.| +|||||. +|.|++.|
T Consensus 240 ~~G~D~~~fh~~~~pa~l~~~~~~~~~~~~~~~~~-~~~g--~kmSkS~-gn~i~~~~ 293 (319)
T cd00814 240 FIGKDIIRFHAIYWPAMLLGAGLPLPTRIVAHGYL-TVEG--KKMSKSR-GNVVDPDD 293 (319)
T ss_pred EEeechhhhhHHHHHHHHHhCCCCCCcEeeeeeeE-EECC--eeecccC-CcccCHHH
Confidence 5899987754322 11222244443433 334443 3444 8999998 89999865
No 83
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=82.77 E-value=4.4 Score=41.23 Aligned_cols=76 Identities=20% Similarity=0.176 Sum_probs=44.8
Q ss_pred CCceEEEEeeccCCCCcchhhhHHHH---HH-HHHHHhCCceEEEEee-Ccc--cccc---c-CCCHHHH-HHHHHHHHH
Q 020745 83 GEKFYLYTGRGPSSEALHLGHLVPFM---FT-KYLQDAFKVPLVIQLT-DDE--KCMW---K-NLSVEES-QRLARENAK 150 (322)
Q Consensus 83 ~~~~~vytG~~PSg~slHlGhli~~~---~~-~~lQ~~~g~~v~I~Ia-D~~--~~l~---r-~~~~e~i-~~~~~~~~~ 150 (322)
++.-...||-=|.+ .+||||..+++ .+ ++|+ ..|..|....+ |++ +... + ..+++++ +.+..+..+
T Consensus 20 ~~v~~yvcgptvy~-~~HiGhar~~v~~Dvl~R~lr-~~G~~V~~v~n~tD~ddkIi~~A~~~g~~~~e~a~~~~~~f~~ 97 (465)
T TIGR00435 20 GKVKMYVCGPTVYD-YCHIGHARTAIVFDVLRRYLR-YLGYKVQYVQNITDIDDKIIKRARENGESVYEVSERFIEAYFE 97 (465)
T ss_pred CcceEEEecCccCC-CcccccchHHHHHHHHHHHHH-HcCCcEEEEEeeCCccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 44444567888887 89999976643 33 4454 44655544322 444 2221 1 2566654 445556777
Q ss_pred HHHHcCCCCC
Q 020745 151 DIIACGFDVT 160 (322)
Q Consensus 151 ~iiA~G~dp~ 160 (322)
++.++|+.++
T Consensus 98 dl~~LgI~~d 107 (465)
T TIGR00435 98 DMKALNVLPP 107 (465)
T ss_pred HHHHhCCCCC
Confidence 7888888643
No 84
>PRK13804 ileS isoleucyl-tRNA synthetase; Provisional
Probab=82.68 E-value=1 Score=49.88 Aligned_cols=54 Identities=22% Similarity=0.180 Sum_probs=30.9
Q ss_pred ccccccChhh-HHHHHHHHHHHhCCCCc--eeeecccccCCCCCCCcCCCCCCCCeeecC
Q 020745 234 LIPCAIDQDP-YFRMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVT 290 (322)
Q Consensus 234 lvp~G~DQd~-~~~ltrdla~k~~~~kp--~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~ 290 (322)
+...|.||.. |+.-+-=.+--+....| .++.|-++...+| +|||||. +|.|...
T Consensus 586 ~~~eG~Di~rgWF~s~ll~s~~~~~~~P~k~V~~HG~vld~~G--~KMSKSl-GNvIdP~ 642 (961)
T PRK13804 586 LYLEGSDQHRGWFNSSLLESCGTRGRAPYKAVLTHGFTLDEKG--EKMSKSL-GNTVSPQ 642 (961)
T ss_pred EEEEEcccccHHHHHHHHHHHHhcCCCChhhEEEeccEECCCC--CCccCCC-CCcCCHH
Confidence 4578999875 44332111111222233 3444666655565 8999999 8888654
No 85
>PLN02286 arginine-tRNA ligase
Probab=82.37 E-value=1.9 Score=45.02 Aligned_cols=63 Identities=14% Similarity=0.216 Sum_probs=46.1
Q ss_pred cccccccChhhHHHHHHHHHHHhCCCCc------eeeecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHH
Q 020745 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKP------ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKN 298 (322)
Q Consensus 233 ~lvp~G~DQd~~~~ltrdla~k~~~~kp------~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~ 298 (322)
++--+|.||..|+.-...+++.+|+.++ .++..-++-++.| +||||-. ++.|+|.|=-+++..
T Consensus 330 ~IyVvg~~q~~hf~~v~~~l~~lG~~~~~~~~~l~h~~~g~V~~~~g--~kmStR~-G~~v~L~dlldea~~ 398 (576)
T PLN02286 330 IIYVTDVGQQQHFDMVFKAAKRAGWLPEDTYPRLEHVGFGLVLGEDG--KRFRTRS-GEVVRLVDLLDEAKS 398 (576)
T ss_pred EEEEEeCcHHHHHHHHHHHHHHcCCCccccCCceEEEeeccEECCCC--CcccCCC-CCeeEHHHHHHHHHH
Confidence 4446899999999999999999997522 2233445644554 7999877 899999886665444
No 86
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=81.17 E-value=1.1 Score=49.05 Aligned_cols=55 Identities=20% Similarity=0.184 Sum_probs=31.7
Q ss_pred ccccccChhh-HHHHHHHHHHHh-CCCCce-eeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 234 LIPCAIDQDP-YFRMTRDVAPRI-GYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 234 lvp~G~DQd~-~~~ltrdla~k~-~~~kp~-~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
+...|.||-. |+......+--+ +...|. .+.+-++...+ |+|||||. +|.|++.|
T Consensus 567 ~~i~G~Di~r~Wf~~~~~~~~~~~~~~P~k~v~~hG~vl~~~--G~KMSKSk-GNvI~p~d 624 (861)
T TIGR00392 567 FILEGSDQTRGWFYSSLAIGTALFGQAPYKNVITHGFTLDEK--GRKMSKSL-GNVVDPLK 624 (861)
T ss_pred EEEEecchhccHHHHHHHHHHHHcCCCChHhhEecceEECCC--CCCcCCCC-CCCCCHHH
Confidence 4578999966 343333333222 433322 23344554445 48999999 89987654
No 87
>PRK05743 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=80.89 E-value=1.3 Score=48.71 Aligned_cols=52 Identities=27% Similarity=0.245 Sum_probs=31.3
Q ss_pred ccccccChhh-HH--HHHHHHHHHhCCCCc-eeeecccccCCCCCCCcCCCCCCCCeeec
Q 020745 234 LIPCAIDQDP-YF--RMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV 289 (322)
Q Consensus 234 lvp~G~DQd~-~~--~ltrdla~k~~~~kp-~~l~~~~lp~L~G~~~KMSkS~p~~aI~L 289 (322)
+...|.||.. |+ .+-..++- .+.+.+ .++.|-++...+| +|||||. +|.|..
T Consensus 548 l~~~G~Di~r~Wf~~~l~~~~~~-~g~~P~k~vl~HG~vld~~G--~KMSKSl-GNvIdP 603 (912)
T PRK05743 548 LYLEGSDQHRGWFQSSLLTSVAT-RGKAPYKQVLTHGFTVDGKG--RKMSKSL-GNVIDP 603 (912)
T ss_pred EEEecccccchHHHHHHHHHHHh-cCCCccceeEEeeeEECCCC--CCCCCCC-CCcCCH
Confidence 4578999964 32 23344443 444333 2334556655565 8999998 787764
No 88
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=80.68 E-value=2.6 Score=40.49 Aligned_cols=66 Identities=18% Similarity=0.220 Sum_probs=35.8
Q ss_pred cCCCCcchhhhHHHH---HHHHHHHhCCceEEE-EeeCcccc-c----ccC-CCHHH-HHHHHHHHHHHHHHcCCCCC
Q 020745 94 PSSEALHLGHLVPFM---FTKYLQDAFKVPLVI-QLTDDEKC-M----WKN-LSVEE-SQRLARENAKDIIACGFDVT 160 (322)
Q Consensus 94 PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I-~IaD~~~~-l----~r~-~~~e~-i~~~~~~~~~~iiA~G~dp~ 160 (322)
|+| .+||||+.+.+ ++.++++.-|..|.. .=.|.+.. . .+. .+..+ ++++..+..+++.++|+.++
T Consensus 11 ~ng-~~HiGH~~~~v~~Dv~~R~lr~~G~~V~~v~g~Dd~g~~i~~~a~~~g~~~~e~~~~~~~~~~~~~~~lgi~~d 87 (314)
T cd00812 11 PSG-ALHVGHVRTYTIGDIIARYKRMQGYNVLFPMGFDAFGLPAENAAIKIGRDPEDWTEYNIKKMKEQLKRMGFSYD 87 (314)
T ss_pred CCC-CccccchHHHHHHHHHHHHHHHcCCCcCCCCCcCCCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccee
Confidence 566 89999988754 333333333544433 33455531 1 111 44444 34444566677778888654
No 89
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=80.62 E-value=5.4 Score=40.54 Aligned_cols=67 Identities=15% Similarity=0.137 Sum_probs=38.7
Q ss_pred ccCCCCcchhhhHHHH---HHHHHHHhCCceEEEEe-eCcccc-cc----cC-CCHHH-HHHHHHHHHHHHHHcCCCCC
Q 020745 93 GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQL-TDDEKC-MW----KN-LSVEE-SQRLARENAKDIIACGFDVT 160 (322)
Q Consensus 93 ~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~I-aD~~~~-l~----r~-~~~e~-i~~~~~~~~~~iiA~G~dp~ 160 (322)
-|+| .+||||+.+++ ++.++++..|..+.... .|++.. +. +. .+.++ ++.+..+..+++.++|++++
T Consensus 11 ~~~g-~~HiGh~~~~~~~Dv~~R~~r~~G~~v~~v~g~dd~g~~i~~~a~~~g~~~~~~~~~~~~~~~~~l~~l~I~~D 88 (511)
T PRK11893 11 YPNG-KPHIGHAYTTLAADVLARFKRLRGYDVFFLTGTDEHGQKIQRKAEEAGISPQELADRNSAAFKRLWEALNISYD 88 (511)
T ss_pred CCCC-CcccchhHHHHHHHHHHHHHHhcCCcEEecCCCCCCChHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 4566 89999977643 33333344465555543 455531 11 11 45544 44455667778888998765
No 90
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=78.58 E-value=2.4 Score=46.57 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=35.0
Q ss_pred ccccccChhh-HHHHHHHHHHHhCCCCc--eeeecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHH
Q 020745 234 LIPCAIDQDP-YFRMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 299 (322)
Q Consensus 234 lvp~G~DQd~-~~~ltrdla~k~~~~kp--~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~K 299 (322)
++.=|.||.. ||.-.--+.--+....| .++.|-|+ |++.|.|||||. +|.|. |.+|-+|
T Consensus 558 ~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfv--lDe~GrKMSKSl-GN~v~----P~~V~~~ 619 (933)
T COG0060 558 FYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFV--LDEKGRKMSKSL-GNVVD----PQDVIDK 619 (933)
T ss_pred EEEEeccccchhHHHHHHHHHHHcCCchHHHHhhcccE--ECCCCCCccccC-CCcCC----HHHHHHh
Confidence 4456888854 77655433333333344 23444444 455569999999 78774 5555543
No 91
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=78.44 E-value=1.7 Score=47.03 Aligned_cols=54 Identities=19% Similarity=0.162 Sum_probs=30.4
Q ss_pred ccccccChhhHHHHHHHHHHH--hCCCCc--eeeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 234 LIPCAIDQDPYFRMTRDVAPR--IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 234 lvp~G~DQd~~~~ltrdla~k--~~~~kp--~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
+...|.||-. +-+.+-++.. +....| ..+.+-++...+| +|||||. +|.|++.|
T Consensus 489 ~~~~G~Di~~-~w~~~~l~~~~~~~~~~Pf~~v~~hg~v~~~~G--~KMSKS~-GN~i~p~~ 546 (800)
T PRK13208 489 LRPQGHDIIR-TWLFYTILRAYLLTGKLPWKNIMISGMVLDPDG--KKMSKSK-GNVVTPEE 546 (800)
T ss_pred EEEeecchhh-hHHHHHHHHHHHhcCCCCcceEEEeeEEECCCC--CCCCCCC-CCCCCHHH
Confidence 3457888765 2222222221 222234 2334555655565 8999999 88888644
No 92
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=78.30 E-value=1.9 Score=47.16 Aligned_cols=54 Identities=22% Similarity=0.183 Sum_probs=33.0
Q ss_pred ccccccChhhHHHHHHHHHH--HhCCCCc--eeeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 234 LIPCAIDQDPYFRMTRDVAP--RIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 234 lvp~G~DQd~~~~ltrdla~--k~~~~kp--~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
+...|.||-.+.- +|-++. .+....| .++.+-++...+| +|||||. +|.|++.|
T Consensus 481 ~~~~G~Dii~fw~-~~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G--~KMSKS~-GN~i~p~~ 538 (861)
T TIGR00422 481 LLVTGYDIIFFWV-ARMIFRSLALTGQVPFKEVYIHGLVRDEQG--RKMSKSL-GNVIDPLD 538 (861)
T ss_pred eeecchhhhhHHH-HHHHHHHHHhcCCCchheEEEeeEEECCCC--CCCCcCC-CCCCCHHH
Confidence 4578999866432 222332 2323344 3444666666665 8999999 89998755
No 93
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=78.25 E-value=3.7 Score=39.14 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=20.1
Q ss_pred cCCCCcchhhhHHHH----HHHHHHHhCCceEEE-EeeCccc
Q 020745 94 PSSEALHLGHLVPFM----FTKYLQDAFKVPLVI-QLTDDEK 130 (322)
Q Consensus 94 PSg~slHlGhli~~~----~~~~lQ~~~g~~v~I-~IaD~~~ 130 (322)
|+| .+||||+.+.+ +.+++... |..|.. .=.|.+.
T Consensus 11 ~~g-~~HiGH~~~~i~~D~i~R~~r~~-G~~v~~~~g~D~~g 50 (312)
T cd00668 11 ANG-SLHLGHALTHIIADFIARYKRMR-GYEVPFLPGWDTHG 50 (312)
T ss_pred CCC-CcchhHHHHHHHHHHHHHHHHhC-CCCCCCCCccCCCC
Confidence 566 89999988743 33444433 544433 3346654
No 94
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=77.22 E-value=2 Score=47.00 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=33.1
Q ss_pred ccccccChhhHHHHHHHHHHHh--CCCCc--eeeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 234 LIPCAIDQDPYFRMTRDVAPRI--GYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 234 lvp~G~DQd~~~~ltrdla~k~--~~~kp--~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
+...|.||-.+ =.+|-++.-+ ....| .++.|-++...+| +|||||. ||.|+..|
T Consensus 476 ~~~~G~Dii~~-W~a~~~~~~~~~~~~~Pfk~v~~hG~v~d~~G--~KMSKSl-GNvIdP~d 533 (874)
T PRK05729 476 VLVTGFDIIFF-WVARMIMMGLHFTGQVPFKDVYIHGLVRDEQG--RKMSKSK-GNVIDPLD 533 (874)
T ss_pred cccccccccch-HHHHHHHHHHHhcCCCchhheEEeeeEECCCC--CCcccCC-CCCCCHHH
Confidence 44688887764 2333333332 22345 3344666666665 8999999 89988654
No 95
>PLN02610 probable methionyl-tRNA synthetase
Probab=77.17 E-value=5.9 Score=43.14 Aligned_cols=76 Identities=8% Similarity=-0.006 Sum_probs=44.3
Q ss_pred CceEEEEeec-cCCCCcchhhhHH-H---HHHHHHHHhCCceEEEEee-Cccccc-c----c-CCCHHH-HHHHHHHHHH
Q 020745 84 EKFYLYTGRG-PSSEALHLGHLVP-F---MFTKYLQDAFKVPLVIQLT-DDEKCM-W----K-NLSVEE-SQRLARENAK 150 (322)
Q Consensus 84 ~~~~vytG~~-PSg~slHlGhli~-~---~~~~~lQ~~~g~~v~I~Ia-D~~~~l-~----r-~~~~e~-i~~~~~~~~~ 150 (322)
++++|-|.+= |+| .+||||+.+ . ....++++.-|..+..+.| |.|+.- . + ..++++ +.++.....+
T Consensus 17 ~~~~ITt~~pY~Ng-~~HlGH~~~~~l~aDv~aRy~r~~G~~v~f~~GtDehG~~i~~~A~~~g~~p~e~~d~~~~~~~~ 95 (801)
T PLN02610 17 RNILITSALPYVNN-VPHLGNIIGCVLSADVFARYCRLRGYNAIYICGTDEYGTATETKALEENCTPKEICDKYHAIHKE 95 (801)
T ss_pred CCEEEeCCCCCCCC-CcccchhhhhHHHHHHHHHHHHhCCCceEecccccCCcHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 3566666653 566 899999884 2 2445566666777777665 445421 1 1 245544 4444445555
Q ss_pred HHHHcCCCCC
Q 020745 151 DIIACGFDVT 160 (322)
Q Consensus 151 ~iiA~G~dp~ 160 (322)
.+.++|++.+
T Consensus 96 ~~~~l~i~~D 105 (801)
T PLN02610 96 VYDWFDISFD 105 (801)
T ss_pred HHHHcCCccc
Confidence 6667777644
No 96
>PRK06039 ileS isoleucyl-tRNA synthetase; Reviewed
Probab=76.67 E-value=2.3 Score=47.23 Aligned_cols=55 Identities=16% Similarity=0.097 Sum_probs=29.6
Q ss_pred ccccccChhh-HHHHHHHHHHH-hCCCCc-eeeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 234 LIPCAIDQDP-YFRMTRDVAPR-IGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 234 lvp~G~DQd~-~~~ltrdla~k-~~~~kp-~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
++..|.||-. |+-....+.-- ++.+.+ ..+.+-++...+ |+|||||. +|.|++.|
T Consensus 548 ~~~~G~Di~r~Wf~~l~~~~~~~~~~~pfk~v~~hG~Vld~~--G~KMSKSl-GNvIdP~d 605 (975)
T PRK06039 548 FIVEGIDQTRGWFYTLLALSTALFDRPPYKNVLVHGHVLDED--GQKMSKSL-GNYVDPFE 605 (975)
T ss_pred EEEechhhHhhHHHHHHHHHHHhcCCCcccEEEEeeeEECCC--CCCcCCCC-CCcCCHHH
Confidence 4457999876 33222222111 222221 223355554445 48999999 88886543
No 97
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=76.50 E-value=10 Score=36.54 Aligned_cols=75 Identities=23% Similarity=0.337 Sum_probs=41.3
Q ss_pred CceEEE-EeeccCCCCcchhhhHHHH---HH-HHHHHhCCceEE--EEeeCcc-ccccc----CCCHHHH-HHHHHHHHH
Q 020745 84 EKFYLY-TGRGPSSEALHLGHLVPFM---FT-KYLQDAFKVPLV--IQLTDDE-KCMWK----NLSVEES-QRLARENAK 150 (322)
Q Consensus 84 ~~~~vy-tG~~PSg~slHlGhli~~~---~~-~~lQ~~~g~~v~--I~IaD~~-~~l~r----~~~~e~i-~~~~~~~~~ 150 (322)
+.+.+| ||--+-. ..||||+-+++ .+ ++|+. .|..|. .-|+|.. |.+.+ ..++.++ +.+..+..+
T Consensus 7 ~~v~~Y~CGPTVYd-~~HiGhaR~~v~~D~l~R~L~~-~g~~V~~V~NiTDiDDKii~~A~~~g~~~~ela~~y~~~f~~ 84 (300)
T PF01406_consen 7 GKVRMYVCGPTVYD-YAHIGHARTYVFFDVLRRYLEY-LGYDVTYVMNITDIDDKIIKRAREEGVSPQELARRYEEEFFE 84 (300)
T ss_dssp TEEEEEEEEEBTTS---BHHHHHHHHHHHHHHHHHHH-TT-EEEEEEEEB-SSHHHHHHHHHTTS-HHHHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCCC-CCCCcceeeeeeHHHHHHHHHH-cCCeEEEEEeccccchHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 455665 5666664 89999977653 33 45665 565553 3589987 54432 2666664 445567777
Q ss_pred HHHHcCCCCC
Q 020745 151 DIIACGFDVT 160 (322)
Q Consensus 151 ~iiA~G~dp~ 160 (322)
++.++|+.+-
T Consensus 85 dm~~Lnv~~p 94 (300)
T PF01406_consen 85 DMKALNVLPP 94 (300)
T ss_dssp HHHHTT----
T ss_pred HHHHcCCCCC
Confidence 8888888653
No 98
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=76.23 E-value=5.9 Score=41.89 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=40.9
Q ss_pred CceEEEEee-ccCCCCcchhhhHHHH---HHHHHHHhCCceEEEE-eeCcccc-cc----c-CCCHHH-HHHHHHHHHHH
Q 020745 84 EKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDEKC-MW----K-NLSVEE-SQRLARENAKD 151 (322)
Q Consensus 84 ~~~~vytG~-~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~-IaD~~~~-l~----r-~~~~e~-i~~~~~~~~~~ 151 (322)
++++|-|.+ -|+| .+||||+.+.+ .+.++++.-|..+..+ =+|.|.. .. + ..++++ +..+.....++
T Consensus 4 ~~~~it~~~py~ng-~~HiGH~~~~~~aDv~~R~~r~~G~~v~~~~g~D~~g~~i~~~A~~~g~~~~e~~d~~~~~fk~~ 82 (648)
T PRK12267 4 KTFYITTPIYYPNG-KPHIGHAYTTIAADALARYKRLQGYDVFFLTGTDEHGQKIQQAAEKAGKTPQEYVDEISAGFKEL 82 (648)
T ss_pred CCEEEeeCCCCCCC-CcccccchHHHHHHHHHHHHHhcCCceEeecCCCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 345554444 3557 89999987653 3334444446555443 4566642 11 1 145544 34444456666
Q ss_pred HHHcCCCCC
Q 020745 152 IIACGFDVT 160 (322)
Q Consensus 152 iiA~G~dp~ 160 (322)
+.++|++.+
T Consensus 83 l~~lgI~~D 91 (648)
T PRK12267 83 WKKLDISYD 91 (648)
T ss_pred HHHcCCCCC
Confidence 677777544
No 99
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=76.23 E-value=2.5 Score=47.34 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=32.7
Q ss_pred ccccccChhhHHHHHHHHHHHh--CCCCc--eeeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 234 LIPCAIDQDPYFRMTRDVAPRI--GYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 234 lvp~G~DQd~~~~ltrdla~k~--~~~kp--~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
+...|.||-.+ =.+|-++.-+ ....| .++.|-++..-+| +|||||. ||.|+..|
T Consensus 494 ~~~~G~Dii~~-W~a~~l~~~~~~~~~~Pfk~V~~hG~v~d~~G--~KMSKSk-GNvIdP~d 551 (1052)
T PRK14900 494 VMETGHDIIFF-WVARMMMMGLHFMGEVPFRTVYLHPMVRDEKG--QKMSKTK-GNVIDPLV 551 (1052)
T ss_pred hhcccccHHhH-HHHHHHHHHHHhcCCCccceeEecccEECCCC--CCccCCC-CCCCCHHH
Confidence 34678887643 3334444333 22344 2444666655554 8999999 89998765
No 100
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=75.95 E-value=0.99 Score=44.86 Aligned_cols=53 Identities=26% Similarity=0.295 Sum_probs=31.4
Q ss_pred cccccccChhhHHHHH---HHHHHHhCCCCceeee-cccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 233 CLIPCAIDQDPYFRMT---RDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 233 ~lvp~G~DQd~~~~lt---rdla~k~~~~kp~~l~-~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
.+-.+|.|--+++-+- --+| .+.+.|..+. +-++. +.| +|||||. +++||..|
T Consensus 284 ~v~~iGkDi~~fH~i~~pa~l~a--~~~~lP~~i~~~~~~~-~~g--~K~SkS~-gn~i~~~~ 340 (391)
T PF09334_consen 284 IVHFIGKDIIRFHAIYWPAMLLA--AGLPLPRRIVVHGFLT-LDG--EKMSKSR-GNVIWPDD 340 (391)
T ss_dssp EEEEEEGGGHHHHHTHHHHHHHH--CTB---SEEEEE--EE-ETT--CCEETTT-TESSBHHH
T ss_pred EEEEEccchhHHHHHHhHHHHhc--ccCCCCCEEEeeeeEE-ECC--eeccccC-CcccCHHH
Confidence 3446888876665544 2233 5556564443 44444 565 8999999 89999865
No 101
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=75.95 E-value=1.1 Score=43.79 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=43.1
Q ss_pred cccccccChhhHHHHHHHHHHHhCCC-C-ceeeec--ccccCCCCCCC-cCCCCCCCCeeecCCCHHHHHHHHhc
Q 020745 233 CLIPCAIDQDPYFRMTRDVAPRIGYH-K-PALIES--SFFPALQGETG-KMSASDPNSAIYVTDSAKAIKNKIIL 302 (322)
Q Consensus 233 ~lvp~G~DQd~~~~ltrdla~k~~~~-k-p~~l~~--~~lp~L~G~~~-KMSkS~p~~aI~L~D~p~~i~~KI~k 302 (322)
++-.+|.||..|+.-...+++++|.. + ..+.|- -++-+-+ |+ |||+.. ++.|.|+|=-++..++...
T Consensus 241 ~iyV~~~~q~~hf~~l~~~l~~lg~~~~~~~~~H~~~g~vl~~~--gk~~mstR~-G~~i~l~dllde~~~~a~~ 312 (354)
T PF00750_consen 241 IIYVVGADQKGHFKQLFAILEALGYDPEAVKLQHVSFGVVLLKD--GKVKMSTRK-GNVITLDDLLDEAVERALE 312 (354)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHTT-HHHHCTEEEEEE-EEEETT--BEESS-TTT-TSSTBHHHHHHHHHHHHHH
T ss_pred EEEEecCchhhHHHHHHHHHHHhCCCCCCCEEEEEEEEEEEcCC--CCccccCCC-CCceEHHHHHHHHHHHHHH
Confidence 44469999999999999999999972 1 122222 2222223 34 799998 8999998766655554433
No 102
>TIGR00398 metG methionyl-tRNA synthetase. The methionyl-tRNA synthetase (metG) is a class I amino acyl-tRNA ligase. This model appears to recognize the methionyl-tRNA synthetase of every species, including eukaryotic cytosolic and mitochondrial forms. The UPGMA difference tree calculated after search and alignment according to this model shows an unusual deep split between two families of MetG. One family contains forms from the Archaea, yeast cytosol, spirochetes, and E. coli, among others. The other family includes forms from yeast mitochondrion, Synechocystis sp., Bacillus subtilis, the Mycoplasmas, Aquifex aeolicus, and Helicobacter pylori. The E. coli enzyme is homodimeric, although monomeric forms can be prepared that are fully active. Activity of this enzyme in bacteria includes aminoacylation of fMet-tRNA with Met; subsequent formylation of the Met to fMet is catalyzed by a separate enzyme. Note that the protein from Aquifex aeolicus is split into an alpha (large) and beta (sma
Probab=75.80 E-value=2.1 Score=43.95 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=31.2
Q ss_pred ccccccChhhHHHHH-HHHHHHhCCCCce-eeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 234 LIPCAIDQDPYFRMT-RDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 234 lvp~G~DQd~~~~lt-rdla~k~~~~kp~-~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
+..+|.|...+.-+. --+..-++.+.|. .+.+-++. +. |+|||||. +|.|++.|
T Consensus 285 v~~~G~Di~~~h~~~~~a~l~~~~~~~~~~~~~~g~v~-~~--g~KmSKS~-Gn~i~~~d 340 (530)
T TIGR00398 285 IHFIGKDIVRFHTIYWPAMLMGLGLPLPTQVFSHGYLT-VE--GGKMSKSL-GNVVDPSD 340 (530)
T ss_pred EEEEecccchhHHHHHHHHHHhCCCCCCCEEEeeccEE-EC--CceecccC-CceecHHH
Confidence 447899988854332 1122223444442 22344442 33 48999999 89998765
No 103
>cd02168 NMNAT_Nudix Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional proteins, also containing a Nudix hydrolase domain. N-terminal NMNAT (Nicotinamide/nicotinate mononucleotide adenylyltransferase) domain of a novel bifunctional enzyme endowed with NMN adenylyltransferase and Nudix hydrolase activities. This domain is highly homologous to the archeal NMN adenyltransferase that catalyzes NAD synthesis from NMN and ATP. NMNAT is an essential enzyme in the biosynthesis of NAD(+) and NADP(+). Nicotinamide-nucleotide adenylyltransferase synthesizes NAD via the salvage pathway, while nicotinate-nucleotide adenylyltransferase synthesizes the immediate precursor of NAD via the de novo pathway. The C-terminal domain of this enzyme shares homology with the archaeal ADP-ribose pyrophosphatase, a member of the 'Nudix' hydrolase family.
Probab=74.76 E-value=22 Score=31.47 Aligned_cols=69 Identities=20% Similarity=0.352 Sum_probs=39.5
Q ss_pred EEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcc--cccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEE
Q 020745 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE--KCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIF 165 (322)
Q Consensus 88 vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~--~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~ 165 (322)
+|.|.- +.+|+||+..+.. -++. ++ .++|.|+... ....+..+.++-.++.+..+ ...|++.+++.|.
T Consensus 3 l~~GrF---~P~H~GHl~~i~~--a~~~-~~-~vii~i~s~~~~~~~~~p~~~~eR~~mi~~~~---~~~~~~~~rv~i~ 72 (181)
T cd02168 3 VYIGRF---QPFHNGHLAVVLI--ALEK-AK-KVIILIGSARTARNIKNPWTSEEREVMIEAAL---SDAGADLARVHFR 72 (181)
T ss_pred EEeecc---CCCCHHHHHHHHH--HHHH-CC-eEEEEeCCCCCCCCCCCCcCHHHHHHHHHHHH---hccCCCcceEEEE
Confidence 566644 5699999865532 2443 35 6777776553 21112267766555443332 2458888888665
Q ss_pred e
Q 020745 166 S 166 (322)
Q Consensus 166 ~ 166 (322)
-
T Consensus 73 p 73 (181)
T cd02168 73 P 73 (181)
T ss_pred e
Confidence 3
No 104
>PRK12267 methionyl-tRNA synthetase; Reviewed
Probab=74.67 E-value=1.6 Score=46.14 Aligned_cols=53 Identities=15% Similarity=0.218 Sum_probs=30.3
Q ss_pred cccccChhhHHHHH-HHHHHHhCCCCceee-ecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 235 IPCAIDQDPYFRMT-RDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 235 vp~G~DQd~~~~lt-rdla~k~~~~kp~~l-~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
...|.||-.++-+- --+..-.+.+.|..+ .+-++. +. |+|||||. +|.|+..|
T Consensus 258 ~~~GkDii~fH~i~wpa~l~~~~~~~p~~v~~hg~l~-~e--g~KMSKS~-GN~i~p~d 312 (648)
T PRK12267 258 HLVGKDILRFHAIYWPIMLMALGLPLPKKVFAHGWWL-MK--DGKMSKSK-GNVVDPEE 312 (648)
T ss_pred EEEeeeecchhHHHHHHHHHhCCCCCCcEEEecceEE-EC--CceecccC-CcccCHHH
Confidence 35899998744332 011112345545333 233332 34 48999999 89998765
No 105
>PRK12268 methionyl-tRNA synthetase; Reviewed
Probab=74.13 E-value=1.9 Score=44.59 Aligned_cols=53 Identities=26% Similarity=0.456 Sum_probs=30.7
Q ss_pred cccccChhhHHHHH-HHHHHHhC--CCCc-eeeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 235 IPCAIDQDPYFRMT-RDVAPRIG--YHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 235 vp~G~DQd~~~~lt-rdla~k~~--~~kp-~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
...|.|+-++..+. --+..-.+ .+.| ..+.+-++. ++| +|||||. +|.|++.|
T Consensus 291 ~~~G~D~~~Fh~~~~p~~l~~~~~~~~~P~~v~~~G~v~-~~G--~KMSKS~-GN~I~p~d 347 (556)
T PRK12268 291 YFIGKDNIPFHSIIWPAMLLGSGEPLKLPDEIVSSEYLT-LEG--GKFSKSR-GWGIWVDD 347 (556)
T ss_pred EEEeeccCcchHHHHHHHHHhcCCCCCCCCEeeccCCEE-ECC--eeeccCC-CcccCHHH
Confidence 35788887655432 22233333 3334 233344443 454 8999999 89998765
No 106
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=73.28 E-value=2.9 Score=41.54 Aligned_cols=72 Identities=18% Similarity=0.229 Sum_probs=40.6
Q ss_pred ceEEE-EeeccCCCCcchhhhHHHH---HHHHHHHhCCceEEEE--eeCcc-cccc---cC-CCHHHH-HHHHHHHHHHH
Q 020745 85 KFYLY-TGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ--LTDDE-KCMW---KN-LSVEES-QRLARENAKDI 152 (322)
Q Consensus 85 ~~~vy-tG~~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~--IaD~~-~~l~---r~-~~~e~i-~~~~~~~~~~i 152 (322)
.+.+| ||-=|-+ .+||||+.+++ .++++++..|..|... ++|-. +... +. .+++++ +.+..+..+++
T Consensus 9 ~v~~YvCGpTvY~-~~HIGh~r~~V~~Dvl~R~lr~~G~~V~~V~nitD~ddKIi~~A~~~G~~~~e~a~~~~~~f~~d~ 87 (384)
T PRK12418 9 TATMYVCGITPYD-ATHLGHAATYLAFDLVNRVWRDAGHDVHYVQNVTDVDDPLLERAARDGVDWRDLAEREIALFREDM 87 (384)
T ss_pred eeEEEecCCCCCC-CCccchhHHHHHHHHHHHHHHHcCCceEEEEecCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 34444 5666665 89999987643 3444333446544443 33332 3222 22 666664 44556677788
Q ss_pred HHcCC
Q 020745 153 IACGF 157 (322)
Q Consensus 153 iA~G~ 157 (322)
.++|+
T Consensus 88 ~~Lni 92 (384)
T PRK12418 88 EALRV 92 (384)
T ss_pred HHhCC
Confidence 88886
No 107
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=73.21 E-value=3 Score=28.98 Aligned_cols=31 Identities=23% Similarity=0.508 Sum_probs=26.0
Q ss_pred CCccHHHHHHHhCCCCCCHHHHHHHHHhhCCC
Q 020745 26 GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRP 57 (322)
Q Consensus 26 ~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~ 57 (322)
..||+++++. ||-+||+++.-.-+..+.|++
T Consensus 16 ~kvdWd~wvS-f~GrPltdevK~a~k~i~~~~ 46 (49)
T PF06543_consen 16 PKVDWDKWVS-FDGRPLTDEVKEAMKLIFGKR 46 (49)
T ss_pred cccchHHhee-eCCeeCCHHHHHHHHHHHhhh
Confidence 4699999988 999999999887788777663
No 108
>PLN02882 aminoacyl-tRNA ligase
Probab=72.55 E-value=2.9 Score=47.26 Aligned_cols=52 Identities=21% Similarity=0.060 Sum_probs=28.2
Q ss_pred cccccccChhhHH-H--HHHHHHHHhCCCCc-eeeecccccCCCCCCCcCCCCCCCCeee
Q 020745 233 CLIPCAIDQDPYF-R--MTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIY 288 (322)
Q Consensus 233 ~lvp~G~DQd~~~-~--ltrdla~k~~~~kp-~~l~~~~lp~L~G~~~KMSkS~p~~aI~ 288 (322)
.++.-|.||-... - |..-++ -++.+.+ .++.+-++..=+ |+|||||. +|.|.
T Consensus 569 D~i~eG~Dq~RgWf~~ll~~s~~-l~~~~pfk~VivhG~vlde~--G~KMSKSl-GNvId 624 (1159)
T PLN02882 569 DFVAEGLDQTRGWFYTLMVLSTA-LFDKPAFKNLICNGLVLAED--GKKMSKSL-KNYPD 624 (1159)
T ss_pred eEEEEecchhhhHHHHHHHHHHH-hcCCCCcceeEEccEEECCC--CCCcccCC-CCCCC
Confidence 3557899987733 2 222222 1233333 223344443334 59999998 78774
No 109
>PLN02843 isoleucyl-tRNA synthetase
Probab=72.14 E-value=3.2 Score=46.14 Aligned_cols=52 Identities=23% Similarity=0.163 Sum_probs=29.4
Q ss_pred ccccccChhh--HHHHH-HHHHHHhCCCCc-eeeecccccCCCCCCCcCCCCCCCCeeec
Q 020745 234 LIPCAIDQDP--YFRMT-RDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYV 289 (322)
Q Consensus 234 lvp~G~DQd~--~~~lt-rdla~k~~~~kp-~~l~~~~lp~L~G~~~KMSkS~p~~aI~L 289 (322)
+...|.||.. +..+. .-++- .+...+ ..+.|.++..-+| +|||||. +|.|..
T Consensus 567 l~~eG~Di~rgWf~s~l~~~~~~-~g~~Pfk~v~~HG~vld~~G--~KMSKSl-GNvI~p 622 (974)
T PLN02843 567 LYLEGSDQHRGWFQSSLLTSVAT-KGKAPYKSVLTHGFVLDEKG--FKMSKSL-GNVVDP 622 (974)
T ss_pred eeeeeccccchHHHHHHHHHHHh-cCCCccceEEEeccEECCCC--CCcCCCC-CCcCCH
Confidence 4568999987 32322 22221 333221 2334555654554 8999998 787754
No 110
>cd00818 IleRS_core catalytic core domain of isoleucyl-tRNA synthetases. Isoleucine amino-acyl tRNA synthetases (IleRS) catalytic core domain . This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. IleRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=72.06 E-value=8.9 Score=37.20 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=24.2
Q ss_pred eEEEEee-ccCCCCcchhhhHHHH---HHHHHHHhCCceEEEE-eeCccc
Q 020745 86 FYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDEK 130 (322)
Q Consensus 86 ~~vytG~-~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~-IaD~~~ 130 (322)
|.+..|- -|+| .+||||+.+.. .+.++++..|..|... =.|.|+
T Consensus 3 f~i~~~pP~vnG-~lHiGHa~~~~~~Dvl~Ry~r~~G~~V~~~~g~D~hG 51 (338)
T cd00818 3 FVFHDGPPYANG-LPHYGHALNKILKDIINRYKTMQGYYVPRRPGWDCHG 51 (338)
T ss_pred eEEecCCCCCCC-CchHHHHHHHHHHHHHHHHHHhcCCccCCcCCcCCCC
Confidence 4444443 2466 89999988743 3334444456555443 345543
No 111
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=71.30 E-value=7.9 Score=42.14 Aligned_cols=77 Identities=18% Similarity=0.164 Sum_probs=45.2
Q ss_pred CceEEEEee-ccCCCCcchhhhHHH---HHHHHHHHhCCceEEEEeeCcccc-------cc-cC-CCHHHHHHHHHHHHH
Q 020745 84 EKFYLYTGR-GPSSEALHLGHLVPF---MFTKYLQDAFKVPLVIQLTDDEKC-------MW-KN-LSVEESQRLARENAK 150 (322)
Q Consensus 84 ~~~~vytG~-~PSg~slHlGhli~~---~~~~~lQ~~~g~~v~I~IaD~~~~-------l~-r~-~~~e~i~~~~~~~~~ 150 (322)
+++++..=| -||| .||+||.... ..+.++++.-|-.|.--+| +|++ .. .. .+..-...|..++.+
T Consensus 34 ~Kfyvl~mfPYpSG-~LHvGH~r~Yti~Dv~aRykRm~GyNVL~PMG-wdafGlPae~~A~~~~~~P~~wt~~ni~~~k~ 111 (814)
T COG0495 34 EKFYVLVMFPYPSG-ALHVGHVRNYTIGDVIARYKRMQGYNVLHPMG-WDAFGLPAENAAIKIGTDPAKWTYYNIAYMKK 111 (814)
T ss_pred CceEEEeCCCCCCC-CcccCccccccHHHHHHHHHHhcCCeecccCc-ccccCchHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 467777666 4888 7999997653 3455566655666555444 2221 00 11 222234455556667
Q ss_pred HHHHcCCCCCce
Q 020745 151 DIIACGFDVTKT 162 (322)
Q Consensus 151 ~iiA~G~dp~kt 162 (322)
++.++||+-+-.
T Consensus 112 qlk~lG~siDW~ 123 (814)
T COG0495 112 QLKSLGFSIDWR 123 (814)
T ss_pred HHHHhCCccccc
Confidence 778889876533
No 112
>cd00817 ValRS_core catalytic core domain of valyl-tRNA synthetases. Valine amino-acyl tRNA synthetase (ValRS) catalytic core domain. This enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. ValRS has an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=70.97 E-value=12 Score=36.86 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=25.4
Q ss_pred eEEEEeec-cCCCCcchhhhHHHH---HHHHHHHhCCceEEEEe-eCcc
Q 020745 86 FYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQL-TDDE 129 (322)
Q Consensus 86 ~~vytG~~-PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~I-aD~~ 129 (322)
+++.+|.= |+| .+||||+.+.. .+.++++.-|..|.... .|.|
T Consensus 3 f~i~~~pPy~nG-~lHiGH~~~~~~~Dv~~Ry~r~~G~~V~~~~G~D~h 50 (382)
T cd00817 3 FVIDTPPPNVTG-SLHMGHALNNTIQDIIARYKRMKGYNVLWPPGTDHA 50 (382)
T ss_pred EEEecCCCCCCC-cchHHHHHHHHHHHHHHHHHHhcCCcccccCccCCC
Confidence 44444432 566 89999988753 33445555576665544 3554
No 113
>PLN02943 aminoacyl-tRNA ligase
Probab=70.54 E-value=3.3 Score=45.97 Aligned_cols=54 Identities=22% Similarity=0.140 Sum_probs=33.0
Q ss_pred ccccccChhhHHHHHHHHHHH--hCCCCc--eeeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 234 LIPCAIDQDPYFRMTRDVAPR--IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 234 lvp~G~DQd~~~~ltrdla~k--~~~~kp--~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
+...|.||-. +=++|-++.- +....| ..+.|.++...+| +|||||. ||.|+..|
T Consensus 539 l~~~G~Dii~-fW~a~m~~~~~~~~~~~Pf~~v~~hg~v~~~~G--~KMSKS~-GN~i~p~~ 596 (958)
T PLN02943 539 VLETGHDILF-FWVARMVMMGIEFTGTVPFSYVYLHGLIRDSQG--RKMSKTL-GNVIDPLD 596 (958)
T ss_pred EEEEeehHHH-HHHHHHHHhhhhhcCCCChheEEEeccEECCCC--CcccCcC-CCCCCHHH
Confidence 3457999874 3344444332 222335 2344666666665 8999999 89998765
No 114
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=70.24 E-value=16 Score=37.63 Aligned_cols=75 Identities=20% Similarity=0.212 Sum_probs=43.7
Q ss_pred CceEEE-EeeccCCCCcchhhhHHH---HHH-HHHHHhCCceEEE--EeeCc----------c-cccc---c-CCCHHH-
Q 020745 84 EKFYLY-TGRGPSSEALHLGHLVPF---MFT-KYLQDAFKVPLVI--QLTDD----------E-KCMW---K-NLSVEE- 140 (322)
Q Consensus 84 ~~~~vy-tG~~PSg~slHlGhli~~---~~~-~~lQ~~~g~~v~I--~IaD~----------~-~~l~---r-~~~~e~- 140 (322)
+.+.+| ||-=+-+ .+||||+.++ ..+ ++|+ ..|-.|.. =|+|. . +.+. + ..++.+
T Consensus 22 ~~v~mYvCGpTvy~-~~HiGhar~~v~~Dvl~R~l~-~~G~~V~~v~NiTDv~hl~~~~De~ddKii~~A~~~g~~~~e~ 99 (490)
T PRK14536 22 GHVRLYGCGPTVYN-YAHIGNLRTYVFQDTLRRTLH-FLGYRVTHVMNITDVGHLTDDADSGEDKMVKSAQEHGKSVLEI 99 (490)
T ss_pred CceEEEeeCCccCC-CcccchhHHHHHHHHHHHHHH-hcCCceEEEEeeccccccccCCcCCChHHHHHHHHcCCCHHHH
Confidence 345555 5666665 8999997663 344 4455 44644433 36776 2 2221 1 155554
Q ss_pred HHHHHHHHHHHHHHcCCCCC
Q 020745 141 SQRLARENAKDIIACGFDVT 160 (322)
Q Consensus 141 i~~~~~~~~~~iiA~G~dp~ 160 (322)
+.++..+..+++.++|+.+.
T Consensus 100 a~~~~~~f~~d~~~Lni~~~ 119 (490)
T PRK14536 100 AAHYTAAFFRDTARLNIERP 119 (490)
T ss_pred HHHHHHHHHHHHHHcCCCCC
Confidence 45555677888888988653
No 115
>PLN02959 aminoacyl-tRNA ligase
Probab=69.34 E-value=4.1 Score=45.82 Aligned_cols=53 Identities=13% Similarity=-0.006 Sum_probs=27.8
Q ss_pred cccccChhhH-HHHHHHHHHHhCCCCce---eeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 235 IPCAIDQDPY-FRMTRDVAPRIGYHKPA---LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 235 vp~G~DQd~~-~~ltrdla~k~~~~kp~---~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
..-|.||-.. +..++-...-+....|. .+.+-++. ++ |+|||||. +|.|.+.|
T Consensus 675 ~~sG~Dii~~wl~~~l~~~~al~~~~P~p~~v~v~G~V~-~~--G~KMSKSk-GNvI~p~d 731 (1084)
T PLN02959 675 RVSGKDLIQNHLTFAIYNHTAIWAEEHWPRGFRCNGHLM-LN--SEKMSKST-GNFLTLRQ 731 (1084)
T ss_pred EEecccHHHHHHHHHHHHHHHhcCCCCCCceEEEccEEe-cC--CcCccccC-CCcCCHHH
Confidence 3578888663 32222111112222332 22233333 55 49999999 88888754
No 116
>PRK12300 leuS leucyl-tRNA synthetase; Reviewed
Probab=68.73 E-value=2.7 Score=46.31 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=17.7
Q ss_pred eeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 262 LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 262 ~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
.+.+-++.. + |+|||||. +|.|++.+
T Consensus 565 v~~hG~vl~-~--G~KMSKS~-GNvVdp~e 590 (897)
T PRK12300 565 IVVNGFVLL-E--GKKMSKSK-GNVIPLRK 590 (897)
T ss_pred EEEcceEEE-C--CccccCcC-CCCCCHHH
Confidence 344444443 5 48999999 89987654
No 117
>PLN02563 aminoacyl-tRNA ligase
Probab=68.70 E-value=14 Score=41.20 Aligned_cols=77 Identities=17% Similarity=0.141 Sum_probs=45.7
Q ss_pred CCceEEEEeec-cCCCC-cchhhhHHHH---HHHHHHHhCCceEEEEeeCc-cccc-cc-----CCC-HHHHHHHHHHHH
Q 020745 83 GEKFYLYTGRG-PSSEA-LHLGHLVPFM---FTKYLQDAFKVPLVIQLTDD-EKCM-WK-----NLS-VEESQRLARENA 149 (322)
Q Consensus 83 ~~~~~vytG~~-PSg~s-lHlGhli~~~---~~~~lQ~~~g~~v~I~IaD~-~~~l-~r-----~~~-~e~i~~~~~~~~ 149 (322)
++++++.+|+= |+| . |||||+.... .+.++++.-|..|...+|-+ |+.- +. ... .+-+.++...+.
T Consensus 109 k~k~~v~~~~PYpnG-~~lHiGH~~~y~~~DviaRy~Rm~G~~Vl~~~G~D~~GlPiE~~a~~~g~~p~~~~~~~i~~~~ 187 (963)
T PLN02563 109 KPKFYVLDMFPYPSG-AGLHVGHPEGYTATDILARYKRMQGYNVLHPMGWDAFGLPAEQYAIETGTHPKITTLKNIARFR 187 (963)
T ss_pred CCCEEEEeCCCCCCC-cccchhhHHHHHHHHHHHHHHHhcCCeecccccccccCcHHHHHHHHcCCChHHhHHHHHHHHH
Confidence 45688888873 344 4 9999988643 44456666677776666644 4421 11 122 223455555667
Q ss_pred HHHHHcCCCCC
Q 020745 150 KDIIACGFDVT 160 (322)
Q Consensus 150 ~~iiA~G~dp~ 160 (322)
+++.++|+.-+
T Consensus 188 ~q~~~lG~s~D 198 (963)
T PLN02563 188 SQLKSLGFSYD 198 (963)
T ss_pred HHHHHhCcEee
Confidence 77788886443
No 118
>PLN02381 valyl-tRNA synthetase
Probab=68.24 E-value=5.5 Score=44.74 Aligned_cols=54 Identities=20% Similarity=0.176 Sum_probs=31.9
Q ss_pred ccccccChhhHHHHHHHHHHH--hCCCCce--eeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 234 LIPCAIDQDPYFRMTRDVAPR--IGYHKPA--LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 234 lvp~G~DQd~~~~ltrdla~k--~~~~kp~--~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
++.-|.||..+ =.+|-+..- +....|. ++.|.++-.-+| .|||||. +|.|...|
T Consensus 611 ~~~~G~Dii~~-W~~rmi~~~~~~~~~~PFk~v~~hG~V~D~~G--~KMSKS~-GNvIdP~~ 668 (1066)
T PLN02381 611 VLETGHDILFF-WVARMVMMGMQLGGDVPFRKVYLHPMIRDAHG--RKMSKSL-GNVIDPLE 668 (1066)
T ss_pred eeeecchhhhh-HHHHHHHHHHHhCCCCchHHheecceEECCCC--CCCCCCC-CCCCCHHH
Confidence 34578887642 222333332 3344552 345666666665 8999999 88887544
No 119
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=68.04 E-value=4.3 Score=40.75 Aligned_cols=70 Identities=17% Similarity=0.145 Sum_probs=40.6
Q ss_pred EEEeeccCCCCcchhhhHHHH---HHHHHHHhCCceEEEE--eeCcc-cccc---c-CCCHHHH-HHHHHHHHHHHHHcC
Q 020745 88 LYTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ--LTDDE-KCMW---K-NLSVEES-QRLARENAKDIIACG 156 (322)
Q Consensus 88 vytG~~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~--IaD~~-~~l~---r-~~~~e~i-~~~~~~~~~~iiA~G 156 (322)
..||-=|-+ .+||||+.+++ .++++++..|..|..+ ++|-. |.+. + ..+++++ +.+..+..+++.++|
T Consensus 40 YvCGpTvY~-~~HIGhart~V~~Dvl~R~lr~~G~~V~fV~nitD~dDKIi~~A~~~g~t~~ela~~y~~~f~~d~~~Ln 118 (411)
T TIGR03447 40 YVCGITPYD-ATHLGHAATYLTFDLVNRVWRDAGHRVHYVQNVTDVDDPLFERAERDGVDWRELGTSQIDLFREDMEALR 118 (411)
T ss_pred EEeCCccCC-CcccccchHHHHHHHHHHHHHhcCCceEEeeCCCchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence 346777776 89999977643 3444334456555544 33322 3222 1 2666654 445566777777887
Q ss_pred CC
Q 020745 157 FD 158 (322)
Q Consensus 157 ~d 158 (322)
+.
T Consensus 119 i~ 120 (411)
T TIGR03447 119 VL 120 (411)
T ss_pred CC
Confidence 64
No 120
>PRK12418 cysteinyl-tRNA synthetase; Provisional
Probab=67.26 E-value=18 Score=36.09 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=16.2
Q ss_pred cccccCCCCCCCcCCCCCCCCeeecC
Q 020745 265 SSFFPALQGETGKMSASDPNSAIYVT 290 (322)
Q Consensus 265 ~~~lp~L~G~~~KMSkS~p~~aI~L~ 290 (322)
+..+....| +|||||. +|.|.+.
T Consensus 251 H~g~l~~~G--~KMSKSl-GN~i~~~ 273 (384)
T PRK12418 251 HAGMIGLDG--EKMSKSR-GNLVFVS 273 (384)
T ss_pred ECCEECCCC--CcccCcC-CCcCCHH
Confidence 333334554 8999999 8888875
No 121
>PF01406 tRNA-synt_1e: tRNA synthetases class I (C) catalytic domain; InterPro: IPR015803 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Cysteinyl-tRNA synthetase (6.1.1.16 from EC) is an alpha monomer and belongs to class Ia.; GO: 0000166 nucleotide binding, 0004817 cysteine-tRNA ligase activity, 0005524 ATP binding, 0006423 cysteinyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3SP1_B 3TQO_A 3C8Z_B 1LI5_B 1LI7_B 1U0B_B.
Probab=66.82 E-value=2.2 Score=41.08 Aligned_cols=57 Identities=23% Similarity=0.191 Sum_probs=25.2
Q ss_pred cccCh-hhHHHHHHHHHHHhCCCCce---eeecccccCCCCCCCcCCCCCCCCeeecCC-----CHHHHHH
Q 020745 237 CAIDQ-DPYFRMTRDVAPRIGYHKPA---LIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKN 298 (322)
Q Consensus 237 ~G~DQ-d~~~~ltrdla~k~~~~kp~---~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D-----~p~~i~~ 298 (322)
+|+|- -||.+=-+-.++-... +|. -+|+-+|. +. |+|||||. +|.|.+.| +|+.++-
T Consensus 212 GG~DL~FPHHENEiAqs~a~~g-~~~a~~W~H~g~l~-~~--g~KMSKSl-gN~~~i~dll~~~~~~~lR~ 277 (300)
T PF01406_consen 212 GGIDLIFPHHENEIAQSEAATG-KPFANYWMHNGHLN-VD--GEKMSKSL-GNFITIRDLLKKYSPDALRL 277 (300)
T ss_dssp EEGGGTTTHHHHHHHHHHHHHS-S-SEEEEEEE--EE-ET--TCE--TTT-T---BHHHHHTTS-HHHHHH
T ss_pred cccccCCCCccchHHHHHHhhC-chHHHHHHHHHHHh-hc--CccccccC-CCEEEHHHHhhcCCHHHHHH
Confidence 34442 3566544444444433 332 23444442 34 48999998 88888766 5555553
No 122
>PLN02224 methionine-tRNA ligase
Probab=66.70 E-value=4.1 Score=42.99 Aligned_cols=52 Identities=15% Similarity=0.182 Sum_probs=30.1
Q ss_pred ccccChhhHHHHH-HHHHHHhCCCCceee-ecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 236 PCAIDQDPYFRMT-RDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 236 p~G~DQd~~~~lt-rdla~k~~~~kp~~l-~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
.+|.|--+++-+. --+.--.+.+-|..+ .+-++ .+.| +|||||. +|.|++.|
T Consensus 326 ~iGKDii~fH~i~wpa~l~~~g~~~P~~i~~~g~l-~~eG--~KMSKS~-GN~i~p~e 379 (616)
T PLN02224 326 LIGKDILRFHAVYWPAMLMSAGLELPKMVFGHGFL-TKDG--MKMGKSL-GNTLEPFE 379 (616)
T ss_pred EEeecccccHHHHHHHHHHHCCCCCCcEEEecccE-ecCC--ccccccC-CccCCHHH
Confidence 4788877654333 111122355555333 24443 4554 8999999 89998765
No 123
>PRK00133 metG methionyl-tRNA synthetase; Reviewed
Probab=66.30 E-value=4.6 Score=42.96 Aligned_cols=50 Identities=22% Similarity=0.302 Sum_probs=30.7
Q ss_pred ccccChhhHHHHH---HHHHHHhCCCCceee-ecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 236 PCAIDQDPYFRMT---RDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 236 p~G~DQd~~~~lt---rdla~k~~~~kp~~l-~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
.+|.|-..++-+. .=++ .+++.|..+ .+-++.. +| +|||||. +|.|++.|
T Consensus 289 ~iGkDi~~fH~i~wpa~l~a--~g~~lP~~v~~hg~v~~-~G--~KMSKS~-GNvV~p~d 342 (673)
T PRK00133 289 FIGKDIIYFHTLFWPAMLEG--AGYRLPTNVFAHGFLTV-EG--AKMSKSR-GTFIWART 342 (673)
T ss_pred EEeecchhHHHHHHHHHHHh--CCCCCCCEEeeeccEEe-cC--CcccccC-CcccCHHH
Confidence 4888866654432 3233 455555333 3445543 54 8999999 89998764
No 124
>PLN02943 aminoacyl-tRNA ligase
Probab=66.12 E-value=18 Score=40.26 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=36.6
Q ss_pred hhhcCceeecCCHHHHHHHHHhCCceEEEEe-eccCCCCcchhhhHHHH---HHHHHHHhCCceEEEEeeCcc
Q 020745 61 FLRRGVFFAHRDLNDILDAYEKGEKFYLYTG-RGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (322)
Q Consensus 61 l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG-~~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~IaD~~ 129 (322)
..+.|+|....+ ..+++|.+.+| =-+|| .||+||.+... ++.++++.-|..+....|=+|
T Consensus 73 W~~~~~f~~~~~--------~~~~~f~i~~pPP~~tG-~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 136 (958)
T PLN02943 73 WESQGYFKPNFD--------RGGDPFVIPMPPPNVTG-SLHMGHAMFVTLEDIMVRYNRMKGRPTLWIPGTDH 136 (958)
T ss_pred HHHCCCcccCcc--------cCCCCEEEecCCCCCCC-chhHHHHHHHHHHHHHHHHHHhcCCeeecCCCCCc
Confidence 344566654332 23466888887 56798 89999988643 333455544666666555444
No 125
>PTZ00427 isoleucine-tRNA ligase, putative; Provisional
Probab=66.09 E-value=5 Score=45.61 Aligned_cols=53 Identities=21% Similarity=0.133 Sum_probs=28.5
Q ss_pred cccccccChhh-HHHHHHHHHHHhCCCCc--eeeecccccCCCCCCCcCCCCCCCCeee
Q 020745 233 CLIPCAIDQDP-YFRMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIY 288 (322)
Q Consensus 233 ~lvp~G~DQd~-~~~ltrdla~k~~~~kp--~~l~~~~lp~L~G~~~KMSkS~p~~aI~ 288 (322)
.++.=|.||.. |+--.--+.--+....| .++.|-++..-+ |+|||||. +|.|.
T Consensus 675 D~i~eG~Dq~rgWf~s~l~~s~~l~~~~PfK~VlvHG~Vld~d--G~KMSKSl-GNvID 730 (1205)
T PTZ00427 675 DFIAEGLDQTRGWFYTLLVISTLLFDKAPFKNLICNGLVLASD--GKKMSKRL-KNYPD 730 (1205)
T ss_pred eEEEEecchhccHHHHHHHHHHHhcCCCCcceeEEccEEEcCC--CCCcccCC-CCCCC
Confidence 35578999877 33211111112223344 233455554445 58999998 77663
No 126
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=65.49 E-value=5 Score=44.70 Aligned_cols=53 Identities=25% Similarity=0.196 Sum_probs=30.9
Q ss_pred ccccccChhhHHHHHHHHHHHh--CCCCce--eeecccccCCCCCCCcCCCCCCCCeeecC
Q 020745 234 LIPCAIDQDPYFRMTRDVAPRI--GYHKPA--LIESSFFPALQGETGKMSASDPNSAIYVT 290 (322)
Q Consensus 234 lvp~G~DQd~~~~ltrdla~k~--~~~kp~--~l~~~~lp~L~G~~~KMSkS~p~~aI~L~ 290 (322)
+...|.||-. +=.+|-++.-+ ....|. ++.|.++-.-+| +|||||. ||.|...
T Consensus 541 ~~~~G~Dii~-~W~arm~~~~~~~~~~~Pfk~v~~HG~v~d~~G--~KMSKSl-GNvIdP~ 597 (995)
T PTZ00419 541 LLETGSDILF-FWVARMVMMSLHLTDKLPFKTVFLHAMVRDSQG--EKMSKSK-GNVIDPL 597 (995)
T ss_pred EEEechhHHh-HHHHHHHHHHHHhcCCCChHHHhccceEECCCC--CCcccCC-CCcCChH
Confidence 4457887654 22223333332 234563 445666655554 8999998 8888544
No 127
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=63.94 E-value=4.7 Score=44.64 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=28.5
Q ss_pred ccccccChhhH-HHHH--HHHH--HHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 234 LIPCAIDQDPY-FRMT--RDVA--PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 234 lvp~G~DQd~~-~~lt--rdla--~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
+...|.||-++ .-.. .-.| .+-..|+ ..+++-++.. + |+|||||. +|.|++.|
T Consensus 576 ~~~~GkDii~~H~~~~i~~~~a~~~~~~~Pk-~i~~~G~vl~-~--G~KMSKSl-GNvI~p~d 633 (938)
T TIGR00395 576 WRISGKDLIPNHLTFYIFHHVAIFPEKFWPR-GIVVNGYVML-E--GKKMSKSK-GNVLTLEQ 633 (938)
T ss_pred EEEEeeccccchHHHHHHHHHHcCCccccCc-EEEEeceEEe-C--CccccCcC-CCCCCHHH
Confidence 44689998652 2211 1111 1111222 3334444432 4 48999998 89998765
No 128
>KOG1148 consensus Glutaminyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=63.69 E-value=19 Score=37.78 Aligned_cols=72 Identities=25% Similarity=0.367 Sum_probs=39.5
Q ss_pred EEEee--ccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHH-cCCCCCceE
Q 020745 88 LYTGR--GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIA-CGFDVTKTF 163 (322)
Q Consensus 88 vytG~--~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA-~G~dp~kt~ 163 (322)
|+|-| +|-| .|||||.-.+. +++ +.+++|...++- =|+. ++ ..+-.++ .+-|+++.+ +||.|-|+
T Consensus 249 V~TRFPPEPNG-~LHIGHaKAIn-vNFgyAk~~~G~cyLR-fDDT----NP--EkEee~y-f~sI~e~V~WLG~~P~kv- 317 (764)
T KOG1148|consen 249 VVTRFPPEPNG-ILHIGHAKAIN-VNFGYAKAHGGVCYLR-FDDT----NP--EKEEEEY-FESIKEMVAWLGFEPYKV- 317 (764)
T ss_pred eEEeCCCCCCc-eeeecchhhee-echhhhhhhCCeEEEe-cCCC----Cc--chhhHHH-HHHHHHHHHHhCCCceee-
Confidence 67766 6788 99999987663 555 666555433332 2432 11 1111122 233444444 69998664
Q ss_pred EEeccccc
Q 020745 164 IFSDFDYV 171 (322)
Q Consensus 164 I~~ns~~~ 171 (322)
-.+|++.
T Consensus 318 -TysSDyF 324 (764)
T KOG1148|consen 318 -TYSSDYF 324 (764)
T ss_pred -ecchhHH
Confidence 3456665
No 129
>PLN02946 cysteine-tRNA ligase
Probab=63.66 E-value=21 Score=37.39 Aligned_cols=73 Identities=16% Similarity=0.091 Sum_probs=42.0
Q ss_pred ceEEE-EeeccCCCCcchhhhHHH---HHHHHHHHhCCceEEEE--eeCcc-cccc----cCCCHHHH-HHHHHHHHHHH
Q 020745 85 KFYLY-TGRGPSSEALHLGHLVPF---MFTKYLQDAFKVPLVIQ--LTDDE-KCMW----KNLSVEES-QRLARENAKDI 152 (322)
Q Consensus 85 ~~~vy-tG~~PSg~slHlGhli~~---~~~~~lQ~~~g~~v~I~--IaD~~-~~l~----r~~~~e~i-~~~~~~~~~~i 152 (322)
.+.+| ||-=+-+ .+||||+.++ ..++++.+..|..|... ++|.. +.+. ...++.++ +++..+..+++
T Consensus 80 ~v~~Y~CGpTvYd-~~HIGhaR~~V~~Dvl~R~Lr~~Gy~V~~V~niTDiDDKIi~~A~~~g~~~~ela~~y~~~f~~d~ 158 (557)
T PLN02946 80 KVGMYVCGVTAYD-LSHIGHARVYVTFDVLYRYLKHLGYEVRYVRNFTDVDDKIIARANELGEDPISLSRRYCEEFLSDM 158 (557)
T ss_pred ceeEEEeCCccCC-CCccccchhhHHHHHHHHHHHhcCCcEEEEECCCCccCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 45555 4555555 8999997664 34443334456555443 44443 3332 12666654 55556777788
Q ss_pred HHcCCC
Q 020745 153 IACGFD 158 (322)
Q Consensus 153 iA~G~d 158 (322)
.++|+.
T Consensus 159 ~~LnI~ 164 (557)
T PLN02946 159 AYLHCL 164 (557)
T ss_pred HHCCCC
Confidence 888875
No 130
>TIGR03447 mycothiol_MshC cysteine--1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase. Members of this protein family are MshC, l-cysteine:1-D-myo-inosityl 2-amino-2-deoxy-alpha-D-glucopyranoside ligase, an enzyme that uses ATP to ligate a Cys residue to a mycothiol precursor molecule, in the second to last step in mycothiol biosynthesis. This enzyme shows considerable homology to Cys--tRNA ligases, and many instances are misannotated as such. Mycothiol is found in Mycobacterium tuberculosis, Corynebacterium glutamicum, Streptomyces coelicolor, and various other members of the Actinobacteria. Mycothiol is an analog to glutathione.
Probab=62.20 E-value=30 Score=34.84 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=16.6
Q ss_pred ecccccCCCCCCCcCCCCCCCCeeecC
Q 020745 264 ESSFFPALQGETGKMSASDPNSAIYVT 290 (322)
Q Consensus 264 ~~~~lp~L~G~~~KMSkS~p~~aI~L~ 290 (322)
.+..+....| +|||||. +|.|.+.
T Consensus 277 ~H~g~l~~~G--~KMSKSl-GN~i~~~ 300 (411)
T TIGR03447 277 VHAGMIGLDG--EKMSKSL-GNLVFVS 300 (411)
T ss_pred EECCEECcCC--CCccCcC-CCCCCHH
Confidence 3433445565 8999999 8888764
No 131
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=62.04 E-value=5.3 Score=41.71 Aligned_cols=53 Identities=21% Similarity=0.170 Sum_probs=29.4
Q ss_pred ccccChhhHHHHH-HHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 236 PCAIDQDPYFRMT-RDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 236 p~G~DQd~~~~lt-rdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
.+|.|--.++-+- =-+.--.+.+.|..++..-.-.+.| +|||||. ++.||..+
T Consensus 293 fIGKDii~FHav~wPamL~~~~~~lP~~i~ahg~l~~~G--~KmSKSr-G~~V~~~~ 346 (558)
T COG0143 293 FIGKDIIRFHAVYWPAMLMAAGLPLPTRIFAHGFLTLEG--QKMSKSR-GNVVDPDE 346 (558)
T ss_pred EeccccCcchhhHHHHHHHhCCCCCCCEEEeeeeEEECC--ccccccC-CcEEeHHH
Confidence 4677755555443 1111223334554444222223444 8999999 89999766
No 132
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=61.84 E-value=4.7 Score=41.38 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=17.4
Q ss_pred eecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 263 IESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 263 l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
+|+-+| .+.| +|||||. +|.|.+.|
T Consensus 268 ~h~g~l-~~~g--~KMSKSl-GN~itl~d 292 (490)
T PRK14536 268 LHHEFL-LMNK--GKMSKSA-GQFLTLSS 292 (490)
T ss_pred EEcCEE-eecC--ccccccC-CCcccHHH
Confidence 344433 4565 8999999 89998844
No 133
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=60.96 E-value=7.6 Score=42.48 Aligned_cols=54 Identities=22% Similarity=0.195 Sum_probs=30.9
Q ss_pred ccccccChhhHHHHHHHHHHH--hCCCCce--eeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 234 LIPCAIDQDPYFRMTRDVAPR--IGYHKPA--LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 234 lvp~G~DQd~~~~ltrdla~k--~~~~kp~--~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
+++.|-| -=++=.+|-+..- +....|. +..|-++-.-+ |+|||||. ||.|-..|
T Consensus 481 llvtG~D-IIffWvarmi~~~~~~~~~~PFk~V~ihGLVrDe~--G~KMSKS~-GNvIDP~d 538 (877)
T COG0525 481 LLVTGHD-IIFFWVARMIMRGLHLTGEVPFKDVYIHGLVRDEQ--GRKMSKSK-GNVIDPLD 538 (877)
T ss_pred cccccch-hhHHHHHHHHHHHHHhcCCCCccEEEEeeeEEcCC--CCCCcccC-CCcCCHHH
Confidence 4467877 4444455655554 3334563 12233344444 59999999 88885443
No 134
>TIGR00435 cysS cysteinyl-tRNA synthetase. This model finds the cysteinyl-tRNA synthetase from most but not from all species. The enzyme from one archaeal species, Archaeoglobus fulgidus, is found but the equivalent enzymes from some other Archaea, including Methanococcus jannaschii, are not found, although biochemical evidence suggests that tRNA(Cys) in these species are charged directly with Cys rather than through a misacylation and correction pathway as for tRNA(Gln).
Probab=60.77 E-value=5.2 Score=40.70 Aligned_cols=52 Identities=19% Similarity=0.193 Sum_probs=28.0
Q ss_pred ccccChh-hHHHHHHHHHHH-hCCCCc-eeeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 236 PCAIDQD-PYFRMTRDVAPR-IGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 236 p~G~DQd-~~~~ltrdla~k-~~~~kp-~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
.+|.|.. ||++--+-...- .|.+-+ ..+|+-++ .+.| +|||||. +|.|.+.|
T Consensus 224 ~gG~Dl~fpHhene~aqs~a~~g~~~~~~~~h~g~v-~~~g--~KMSKS~-GN~i~~~d 278 (465)
T TIGR00435 224 GGGVDLIFPHHENEIAQSEAAFGKQLAKYWMHNGFL-MIDN--EKMSKSL-GNFFTVRD 278 (465)
T ss_pred ccccccccchHHHHHHHHHHhcCCCCCcEEEEeeEE-EecC--ccccccC-CCcCCHHH
Confidence 5677742 344333222222 342222 22444443 3665 8999998 88888765
No 135
>PLN02563 aminoacyl-tRNA ligase
Probab=60.10 E-value=4.6 Score=44.84 Aligned_cols=14 Identities=36% Similarity=0.411 Sum_probs=11.3
Q ss_pred cCCCCCCCCeeecCC
Q 020745 277 KMSASDPNSAIYVTD 291 (322)
Q Consensus 277 KMSkS~p~~aI~L~D 291 (322)
|||||. +|.|...+
T Consensus 723 KMSKSK-GNvVdP~e 736 (963)
T PLN02563 723 KMSKSR-GNVVNPDD 736 (963)
T ss_pred cccccc-CCcCCHHH
Confidence 999998 88887543
No 136
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=59.34 E-value=14 Score=41.18 Aligned_cols=46 Identities=17% Similarity=0.122 Sum_probs=30.8
Q ss_pred CCceEEEEee-ccCCCCcchhhhHHHH---HHHHHHHhCCceEEEEeeCcc
Q 020745 83 GEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (322)
Q Consensus 83 ~~~~~vytG~-~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~IaD~~ 129 (322)
+++|++.+|. -||| .||+||.+... ++.++++.-|..|....|=+|
T Consensus 59 ~~~f~i~~ppP~~~G-~lHiGHa~~~~~~D~~~Ry~rm~G~~v~~~~G~D~ 108 (995)
T PTZ00419 59 GKKFVIVLPPPNVTG-YLHIGHALTGAIQDSLIRYHRMKGDETLWVPGTDH 108 (995)
T ss_pred CCeEEEEeCCCCCCC-CCcHHHHHHHHHHHHHHHHHHhcCCcccCCCCCCC
Confidence 4567777776 3677 89999988643 344466655777666665444
No 137
>PLN02610 probable methionyl-tRNA synthetase
Probab=59.14 E-value=5.3 Score=43.48 Aligned_cols=52 Identities=15% Similarity=0.271 Sum_probs=30.1
Q ss_pred ccccChhhHHHHH---HHHHHHhCCCCceeee-cccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 236 PCAIDQDPYFRMT---RDVAPRIGYHKPALIE-SSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 236 p~G~DQd~~~~lt---rdla~k~~~~kp~~l~-~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
.+|.|--.++-+. .-++.-+.++.|..+. +-++ .+. |+|||||. +|.||..+
T Consensus 306 fiGKDi~~fH~i~wPa~L~a~g~~~~~p~~i~~~g~l-~~e--G~KMSKS~-GNvV~p~~ 361 (801)
T PLN02610 306 FMGKDNVPFHTVMFPSTLLGTGENWTMMKTISVTEYL-NYE--GGKFSKSK-GVGVFGND 361 (801)
T ss_pred EEeeecchhHHHHHHHHHHhCCCCcCCCCEEEeccCE-ecC--CceecCcC-CcccCHHH
Confidence 5888876666554 2222222233454443 3443 345 48999999 89998654
No 138
>KOG0435 consensus Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=57.91 E-value=16 Score=39.06 Aligned_cols=59 Identities=22% Similarity=0.318 Sum_probs=37.7
Q ss_pred hhhhhcCceeecCCHHHHHHHHHhCCceEEEEee-ccCCCCcchhhhHH---HHHHHHHHHhCCceEEEEee
Q 020745 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVP---FMFTKYLQDAFKVPLVIQLT 126 (322)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~-~PSg~slHlGhli~---~~~~~~lQ~~~g~~v~I~Ia 126 (322)
+....+|..+.. | .-.++++ ||++=| -||| .||+||+.. ...+.++|+.-|-.|+=-+|
T Consensus 40 ~~~~~~~~~~~~-~------~d~sk~K-YiLsMFPYPSG-~LHiGHvRVYTIsD~laRf~rm~GynVihPMG 102 (876)
T KOG0435|consen 40 KQYLKDGFPFSK-D------SDKSKKK-YILSMFPYPSG-ALHIGHVRVYTISDILARFYRMKGYNVIHPMG 102 (876)
T ss_pred HHHHhcCCcccc-c------cccCCCc-eEEEecCCCCC-cccccceEEEEehHHHHHHHHhcCceeecCCc
Confidence 446777887764 1 1124444 898888 5898 899999764 33567777765554443343
No 139
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=57.07 E-value=36 Score=34.99 Aligned_cols=74 Identities=22% Similarity=0.249 Sum_probs=41.6
Q ss_pred ceEEE-EeeccCCCCcchhhhHHHH---HH-HHHHHhCCceEEE--EeeCc----------c-cccc---c-CCCHHH-H
Q 020745 85 KFYLY-TGRGPSSEALHLGHLVPFM---FT-KYLQDAFKVPLVI--QLTDD----------E-KCMW---K-NLSVEE-S 141 (322)
Q Consensus 85 ~~~vy-tG~~PSg~slHlGhli~~~---~~-~~lQ~~~g~~v~I--~IaD~----------~-~~l~---r-~~~~e~-i 141 (322)
.+.+| ||-=+- +.+||||+.+++ .+ ++|+. .|..|.. =|+|. . +... + ..++.+ +
T Consensus 21 ~v~mY~CGpTVY-d~~HiGh~r~~v~~Dvl~R~l~~-~G~~V~~v~NiTDIghltg~~D~gddKIi~~A~~~g~~~~e~a 98 (481)
T PRK14534 21 DVKVYACGPTVY-NYAHIGNFRTYIFEDLLIKSLRL-LKYNVNYAMNITDIGHLTGDFDDGEDKVVKAARERGLTVYEIS 98 (481)
T ss_pred ceEEEeCCCCCC-CCCCccchhHHHHHHHHHHHHHH-cCCceEEEEeccccccccCCccCCCcHHHHHHHHcCCCHHHHH
Confidence 34555 344444 379999977643 33 44554 4544433 46666 2 3222 1 256655 4
Q ss_pred HHHHHHHHHHHHHcCCCCC
Q 020745 142 QRLARENAKDIIACGFDVT 160 (322)
Q Consensus 142 ~~~~~~~~~~iiA~G~dp~ 160 (322)
+.+.....+++.++|+.+.
T Consensus 99 ~~~~~~f~~d~~~Lni~~~ 117 (481)
T PRK14534 99 RFFTEAFFDDCKKLNIVYP 117 (481)
T ss_pred HHHHHHHHHHHHHcCCCCC
Confidence 4555667778888888643
No 140
>TIGR00422 valS valyl-tRNA synthetase. The valyl-tRNA synthetase (ValS) is a class I amino acyl-tRNA ligase and is particularly closely related to the isoleucyl tRNA synthetase.
Probab=56.21 E-value=30 Score=37.93 Aligned_cols=61 Identities=13% Similarity=0.216 Sum_probs=37.0
Q ss_pred hhhhcCceeecCCHHHHHHHHHhCCceEEEEee-ccCCCCcchhhhHHHH---HHHHHHHhCCceEEEEeeCcc
Q 020745 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (322)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~-~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~IaD~~ 129 (322)
...+.|+|....+ ..+++|++++|. -+|| .||+||.+... ++.++++.-|..+....|-+|
T Consensus 17 ~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~nG-~lHiGH~~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 81 (861)
T TIGR00422 17 KWEKSGFFKPDGN--------SNKPPFCIDIPPPNVTG-SLHIGHALNWSIQDIIARYKRMKGYNVLWLPGTDH 81 (861)
T ss_pred HHHHCCCcccCcc--------cCCCeEEEEeCCCCCCC-CCcHHHhHHHHHHHHHHHHHHhcCCcccCCCCcCc
Confidence 3445677654322 134678888876 3567 89999988643 334455555766666555444
No 141
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=55.91 E-value=36 Score=36.51 Aligned_cols=76 Identities=22% Similarity=0.226 Sum_probs=43.8
Q ss_pred CceEEE-EeeccCCCCcchhhhHHH---HHHHHHHHhCCceEEEE--eeCcc-ccccc----CCCHHHH-HHHHHHHHHH
Q 020745 84 EKFYLY-TGRGPSSEALHLGHLVPF---MFTKYLQDAFKVPLVIQ--LTDDE-KCMWK----NLSVEES-QRLARENAKD 151 (322)
Q Consensus 84 ~~~~vy-tG~~PSg~slHlGhli~~---~~~~~lQ~~~g~~v~I~--IaD~~-~~l~r----~~~~e~i-~~~~~~~~~~ 151 (322)
+.+.+| ||-=+-. .+||||+.++ ..++++.+..|..|..+ ++|-. +.+.+ ..++.++ +.+..+..++
T Consensus 247 ~~V~mYvCGPTVYd-~~HIGHaRt~V~~DVL~R~Lr~~Gy~V~fV~NiTD~DDKII~~A~e~G~sp~ela~~y~~~F~~d 325 (699)
T PRK14535 247 ENVRMYVCGMTVYD-YCHLGHARVMVVFDMIARWLRECGYPLTYVRNITDIDDKIIARAAENGETIGELTARFIQAMHED 325 (699)
T ss_pred CceEEEecCCcCCC-CCcccchhHHHHHHHHHHHHHHcCCceEEEeCCcccchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 345555 4555554 8999997764 34444333456555443 44443 33321 2566654 4455677788
Q ss_pred HHHcCCCCC
Q 020745 152 IIACGFDVT 160 (322)
Q Consensus 152 iiA~G~dp~ 160 (322)
+.++|+.+.
T Consensus 326 ~~~LnI~~p 334 (699)
T PRK14535 326 ADALGVLRP 334 (699)
T ss_pred HHHcCCCCC
Confidence 888888653
No 142
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=53.82 E-value=65 Score=31.33 Aligned_cols=70 Identities=20% Similarity=0.379 Sum_probs=39.3
Q ss_pred CceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeC--cccccccCCCHHHHHHHHHHHHHHHHHcCCCCCc
Q 020745 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD--DEKCMWKNLSVEESQRLARENAKDIIACGFDVTK 161 (322)
Q Consensus 84 ~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD--~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~k 161 (322)
....+|.|.- +.+|+||+..+ ++..+.++ .++|.|+. ......+..+.++-.++ ++..++ +++..+
T Consensus 6 ~~~~~~~G~F---~P~H~GHl~~i---~~a~~~~d-~l~v~i~s~~~~~~~~~~~~~~~R~~m----i~~~~~-~~~~~r 73 (340)
T PRK05379 6 YDYLVFIGRF---QPFHNGHLAVI---REALSRAK-KVIVLIGSADLARSIKNPFSFEERAQM----IRAALA-GIDLAR 73 (340)
T ss_pred ceEEEEeecc---CCCCHHHHHHH---HHHHHHCC-EEEEEEccCCCCCcCCCCCCHHHHHHH----HHHHhh-cCCCce
Confidence 3566888865 57999998655 33323233 57777863 22212222677665543 333333 666667
Q ss_pred eEEE
Q 020745 162 TFIF 165 (322)
Q Consensus 162 t~I~ 165 (322)
+.|.
T Consensus 74 ~~~~ 77 (340)
T PRK05379 74 VTIR 77 (340)
T ss_pred EEEE
Confidence 6554
No 143
>PRK13793 nicotinamide-nucleotide adenylyltransferase; Provisional
Probab=53.00 E-value=1.4e+02 Score=27.07 Aligned_cols=56 Identities=16% Similarity=0.352 Sum_probs=33.4
Q ss_pred ceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcc--cccccCCCHHHHHHHHHH
Q 020745 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE--KCMWKNLSVEESQRLARE 147 (322)
Q Consensus 85 ~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~--~~l~r~~~~e~i~~~~~~ 147 (322)
...+|.|+- ..+|+||+-.+. .-+.++ + .++|.||--. -...++.++.+-....+.
T Consensus 5 d~~v~iGRF---QPfH~GHl~~I~--~al~~~-d-evII~IGSA~~s~t~~NPFTa~ER~~MI~~ 62 (196)
T PRK13793 5 DYLVFIGRF---QPFHLAHMQTIE--IALQQS-R-YVILALGSAQMERNIKNPFLAIEREQMILS 62 (196)
T ss_pred eEEEEEecC---CCCcHHHHHHHH--HHHHhC-C-EEEEEEccCCCCCCCCCCCCHHHHHHHHHH
Confidence 456888976 469999986442 225553 4 6788786443 223233777665444333
No 144
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=51.97 E-value=42 Score=35.79 Aligned_cols=74 Identities=26% Similarity=0.365 Sum_probs=42.2
Q ss_pred ceEEE-EeeccCCCCcchhhhHH---HHHH-HHHHHhCCceEEE--EeeCcc-ccccc----CCC-HHH-HHHHHHHHHH
Q 020745 85 KFYLY-TGRGPSSEALHLGHLVP---FMFT-KYLQDAFKVPLVI--QLTDDE-KCMWK----NLS-VEE-SQRLARENAK 150 (322)
Q Consensus 85 ~~~vy-tG~~PSg~slHlGhli~---~~~~-~~lQ~~~g~~v~I--~IaD~~-~~l~r----~~~-~e~-i~~~~~~~~~ 150 (322)
.+.+| ||-=+- +..||||.-+ +..+ ++|++.+|..|.. =|+|.. |...+ .++ +.+ ++.+..+..+
T Consensus 60 ~v~~Y~CGPTvY-d~~HiGhart~v~~Dil~R~l~~~~Gy~V~~v~nitDidDKIi~~A~~~g~~~~~el~~~~~~~f~~ 138 (651)
T PTZ00399 60 QVRWYTCGPTVY-DSSHLGHARTYVTFDIIRRILEDYFGYDVFYVMNITDIDDKIIKRAREEKLSIFLELARKWEKEFFE 138 (651)
T ss_pred eeEEEEeCCCcc-CCcccccchHHHHHHHHHHHHHHhcCCceEEEeCCCCcchHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 34444 343333 4899999654 4444 4566566644444 356654 43322 255 554 4556667778
Q ss_pred HHHHcCCCC
Q 020745 151 DIIACGFDV 159 (322)
Q Consensus 151 ~iiA~G~dp 159 (322)
++.++|+.+
T Consensus 139 d~~~Lni~~ 147 (651)
T PTZ00399 139 DMKALNVRP 147 (651)
T ss_pred HHHHcCCCC
Confidence 888888865
No 145
>PRK05729 valS valyl-tRNA synthetase; Reviewed
Probab=51.78 E-value=23 Score=38.92 Aligned_cols=60 Identities=13% Similarity=0.167 Sum_probs=35.4
Q ss_pred hhhhcCceeecCCHHHHHHHHHhCCceEEEEee-ccCCCCcchhhhHHHH---HHHHHHHhCCceEEEEeeCcc
Q 020745 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (322)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~-~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~IaD~~ 129 (322)
...+.|+|....+ ++++|.+.+|. -+|| .||+||.+... ++.++++.-|..+...-|=+|
T Consensus 21 ~W~~~~~f~~~~~---------~~~~f~i~~ppP~~~G-~lHiGHa~~~~~~D~~~Ry~rm~G~~vl~~~G~D~ 84 (874)
T PRK05729 21 KWEEKGYFKPDDN---------SKKPFSIVIPPPNVTG-SLHMGHALNNTLQDILIRYKRMQGYNTLWLPGTDH 84 (874)
T ss_pred HHHHCCCcccCcC---------CCCCEEEecCCCCCCC-cchHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCc
Confidence 3445676654321 34567777654 3577 89999988643 334455555666555555444
No 146
>KOG2007 consensus Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=50.93 E-value=32 Score=35.56 Aligned_cols=46 Identities=33% Similarity=0.599 Sum_probs=31.7
Q ss_pred CCceEEEEeeccCC-CCcchhh---hHHHHHHHH-HHHhCCceEEEE--eeCcc
Q 020745 83 GEKFYLYTGRGPSS-EALHLGH---LVPFMFTKY-LQDAFKVPLVIQ--LTDDE 129 (322)
Q Consensus 83 ~~~~~vytG~~PSg-~slHlGh---li~~~~~~~-lQ~~~g~~v~I~--IaD~~ 129 (322)
++.+..|+ .+||. |+-|+|| |+.+.++++ |++-||..|... |+|..
T Consensus 53 ~~~v~wY~-CGpTvYD~SHmGHArsYVsfDIlrRiL~dyfgy~V~~vmNiTDVD 105 (586)
T KOG2007|consen 53 GNKVTWYI-CGPTVYDSSHMGHARSYVSFDILRRILRDYFGYDVTFVMNITDVD 105 (586)
T ss_pred CCeEEEEE-ecCcccchhhhhhhhhhhhHHHHHHHHHHHcCcceEEEecccchh
Confidence 44566665 46664 6889999 566766654 898888777654 77765
No 147
>PLN02946 cysteine-tRNA ligase
Probab=49.96 E-value=6.1 Score=41.20 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=18.4
Q ss_pred eeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 262 LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 262 ~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
-+|+-+|. +.| +|||||. +|.|.+.|
T Consensus 311 W~H~G~v~-~~G--~KMSKSl-GN~itl~d 336 (557)
T PLN02946 311 WIHNGFVT-VDS--EKMSKSL-GNFFTIRQ 336 (557)
T ss_pred eeEeeEEE-eCC--CCcCCcC-CCcCCHHH
Confidence 35555555 665 8999998 78887643
No 148
>KOG0433 consensus Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=49.79 E-value=18 Score=39.00 Aligned_cols=59 Identities=20% Similarity=0.224 Sum_probs=34.5
Q ss_pred ccccccChhh-HHHHH--HHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHH
Q 020745 234 LIPCAIDQDP-YFRMT--RDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNK 299 (322)
Q Consensus 234 lvp~G~DQd~-~~~lt--rdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~K 299 (322)
+..=|.||.. ||.-. --+|-+-..|=-+.+.|-|. |+..|.|||||- +|.| +|+.|-++
T Consensus 569 v~LEG~DQ~rGWFQSsLLTsvA~q~kAPYk~vivHGFt--lDE~G~KMSKSl-GNVi----dP~~v~~G 630 (937)
T KOG0433|consen 569 VYLEGVDQFRGWFQSSLLTSVAVQNKAPYKKVIVHGFT--LDENGNKMSKSL-GNVV----DPTMVTDG 630 (937)
T ss_pred eEEecchhcchHHHHHHHHHHHHhccCCchheeeeeeE--ecCCccchhhcc-cCcC----CHHHHhCC
Confidence 4456888854 76433 45555433221123334443 344469999999 7877 57777666
No 149
>TIGR00396 leuS_bact leucyl-tRNA synthetase, eubacterial and mitochondrial family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both eubacterial and mitochondrial leucyl-tRNA synthetases. It generates higher scores for some valyl-tRNA synthetases than for any archaeal or eukaryotic cytosolic leucyl-tRNA synthetase. Note that the enzyme from Aquifex aeolicus is split into alpha and beta chains; neither chain is long enough to score above the trusted cutoff, but the alpha chain scores well above the noise cutoff. The beta chain must be found by a model and search designed for partial length matches.
Probab=49.57 E-value=6.5 Score=43.03 Aligned_cols=14 Identities=36% Similarity=0.380 Sum_probs=11.8
Q ss_pred cCCCCCCCCeeecCC
Q 020745 277 KMSASDPNSAIYVTD 291 (322)
Q Consensus 277 KMSkS~p~~aI~L~D 291 (322)
|||||. +|.|.+.|
T Consensus 604 KMSKS~-GN~v~p~~ 617 (842)
T TIGR00396 604 KMSKSK-GNGIDPQE 617 (842)
T ss_pred hhhhcC-CCcCCHHH
Confidence 999998 88887654
No 150
>PRK14535 cysS cysteinyl-tRNA synthetase; Provisional
Probab=46.45 E-value=7.8 Score=41.36 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=18.3
Q ss_pred eeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 262 LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 262 ~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
-+|+-+|. +.| +|||||. +|.|.+.|
T Consensus 496 WmHnG~V~-vdG--eKMSKSL-GN~it~~d 521 (699)
T PRK14535 496 WLHNGFIR-VDG--EKMSKSL-GNFFTIRE 521 (699)
T ss_pred EEECCeEe-eCC--CccCCCC-CCcCCHHH
Confidence 34555554 665 8999998 78777654
No 151
>PRK13208 valS valyl-tRNA synthetase; Reviewed
Probab=45.55 E-value=21 Score=38.85 Aligned_cols=46 Identities=20% Similarity=0.253 Sum_probs=29.6
Q ss_pred CCceEEEEe-eccCCCCcchhhhHHHH---HHHHHHHhCCceEEEEeeCcc
Q 020745 83 GEKFYLYTG-RGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (322)
Q Consensus 83 ~~~~~vytG-~~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~IaD~~ 129 (322)
++++.+.+| --|+| .|||||+.... .+.++++.-|..+....|-++
T Consensus 37 ~~~f~i~~ppPy~nG-~lHiGH~~~~~~~D~~~R~~r~~G~~v~~~~G~D~ 86 (800)
T PRK13208 37 KPVYSIDTPPPTVSG-SLHIGHVFSYTHTDFIARYQRMRGYNVFFPQGWDD 86 (800)
T ss_pred CCcEEEecCcCCCCC-CccHHHHHhHHHHHHHHHHHHcCCCcccCCCCcCC
Confidence 456777774 45777 89999988753 334455555766666555443
No 152
>PF00750 tRNA-synt_1d: tRNA synthetases class I (R); InterPro: IPR015945 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the core region of arginyl-tRNA synthetase (6.1.1.19 from EC), which has been crystallized and preliminary X-ray crystallographic analysis of yeast arginyl-tRNA synthetase-yeast tRNAArg complexes is available []. ; GO: 0000166 nucleotide binding, 0004814 arginine-tRNA ligase activity, 0005524 ATP binding, 0006420 arginyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 2ZUE_A 2ZUF_A 3FNR_A 1IQ0_A 1F7V_A 1F7U_A 1BS2_A 3GDZ_B.
Probab=43.85 E-value=37 Score=33.21 Aligned_cols=40 Identities=20% Similarity=0.291 Sum_probs=24.0
Q ss_pred EEeeccCCCCcchhhhHHHH---HHHHHHHhCCceEEE--EeeCcc
Q 020745 89 YTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVI--QLTDDE 129 (322)
Q Consensus 89 ytG~~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I--~IaD~~ 129 (322)
|+.--|++ .||+||+-..+ .+..+-++.|..|+- -|+|+=
T Consensus 26 ~sSpNp~k-plHvGHlR~~iiGd~laril~~~G~~V~r~nyigD~G 70 (354)
T PF00750_consen 26 FSSPNPTK-PLHVGHLRNTIIGDSLARILEAAGYDVTRENYIGDWG 70 (354)
T ss_dssp E---BTTS-S-BHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEBTTS
T ss_pred ecCCCCCC-CCcCCcchhhhhhHHHHHHHHHcCCeeeeEEEECCCC
Confidence 88889998 89999988754 233333445766655 477775
No 153
>PRK00777 phosphopantetheine adenylyltransferase; Provisional
Probab=43.59 E-value=78 Score=27.17 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=27.6
Q ss_pred cccccChhhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCC
Q 020745 235 IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASD 282 (322)
Q Consensus 235 vp~G~DQd~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~ 282 (322)
+.+|.||..-.....++-++.|...-....-+++-. +.+.|.|+|.
T Consensus 92 ivvs~et~~~~~~in~~r~~~gl~~l~i~~v~~~~~--~~~~~~SSt~ 137 (153)
T PRK00777 92 IVVSPETYPGALKINEIRRERGLKPLEIVVIDFVLA--EDGKPISSTR 137 (153)
T ss_pred EEEChhhhhhHHHHHHHHHHCCCCceEEEEEeeeec--CCCCeeeHHH
Confidence 357888776666667777777764323333333322 2257899886
No 154
>PRK00390 leuS leucyl-tRNA synthetase; Validated
Probab=42.25 E-value=12 Score=40.74 Aligned_cols=14 Identities=36% Similarity=0.396 Sum_probs=11.5
Q ss_pred cCCCCCCCCeeecCC
Q 020745 277 KMSASDPNSAIYVTD 291 (322)
Q Consensus 277 KMSkS~p~~aI~L~D 291 (322)
|||||. +|.|...|
T Consensus 570 KMSKS~-GN~i~p~~ 583 (805)
T PRK00390 570 KMSKSK-GNVVDPDD 583 (805)
T ss_pred EeCCCC-CCCCCHHH
Confidence 999999 78887654
No 155
>PF00133 tRNA-synt_1: tRNA synthetases class I (I, L, M and V); InterPro: IPR002300 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. The class Ia aminoacyl-tRNA synthetases consist of the isoleucyl, methionyl, valyl, leucyl, cysteinyl, and arginyl-tRNA synthetases; the class Ib include the glutamyl and glutaminyl-tRNA synthetases, and the class Ic are the tyrosyl and tryptophanyl-tRNA synthetases [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1OBC_A 2AJH_B 4ARI_A 2AJG_B 4AQ7_D 2AJI_B 4ARC_A 4AS1_A 1QU3_A 1QU2_A ....
Probab=41.75 E-value=40 Score=35.41 Aligned_cols=44 Identities=14% Similarity=0.192 Sum_probs=26.8
Q ss_pred hCCceEEEEee-ccCCCCcchhhhHHHH---HHHHHHHhCCceEEEEee
Q 020745 82 KGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT 126 (322)
Q Consensus 82 ~~~~~~vytG~-~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~Ia 126 (322)
++++|++..|. -+|| .||+||.+... ++.++++.-|..|....|
T Consensus 21 ~~~~f~i~~~PPy~nG-~lH~GH~~~~~~~D~i~Ry~rm~G~~v~~~~G 68 (601)
T PF00133_consen 21 NKPKFFIHDPPPYANG-DLHIGHALNKTIKDIIARYKRMQGYNVLFPPG 68 (601)
T ss_dssp TSGEEEEEE---BTSS-S-BHHHHHHHHHHHHHHHHHHCTTSEEEEEEE
T ss_pred CCCcEEEEeCCCCCCC-cccHHHHHHHHHHHHHHHHHHhCCcEeCCCCC
Confidence 45678888876 3566 89999998753 333456555766666543
No 156
>cd02166 NMNAT_Archaea Nicotinamide/nicotinate mononucleotide adenylyltransferase, archaeal. This family of archaeal proteins exhibits nicotinamide-nucleotide adenylyltransferase (NMNAT) activity utilizing the salvage pathway to synthesize NAD. In some cases, the enzyme was tested and found also to have the activity of nicotinate-nucleotide adenylyltransferase an enzyme of NAD de novo biosynthesis, although with a higher Km. In some archaeal species, a number of proteins which are uncharacterized with respect to activity, are also present.
Probab=41.50 E-value=2.3e+02 Score=24.36 Aligned_cols=70 Identities=23% Similarity=0.436 Sum_probs=34.1
Q ss_pred EEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcc-cccccC-CCHHHHHHHHHHHHHHHH-HcCCCCCceEE
Q 020745 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE-KCMWKN-LSVEESQRLARENAKDII-ACGFDVTKTFI 164 (322)
Q Consensus 88 vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~-~~l~r~-~~~e~i~~~~~~~~~~ii-A~G~dp~kt~I 164 (322)
+|.|.- +.+|+||+..+ ++..+..+ .++|.|+... ....+. .+.++-.+ +++..+ ..|++.+++.+
T Consensus 3 v~~G~F---dP~H~GHl~~i---~~a~~~~d-~l~v~v~s~~~~~~~~~~~~~~~R~~----mi~~~~~~~~~~~~~v~v 71 (163)
T cd02166 3 LFIGRF---QPFHLGHLKVI---KWILEEVD-ELIIGIGSAQESHTLENPFTAGERVL----MIRRALEEEGIDLSRYYI 71 (163)
T ss_pred EEeecc---CCCCHHHHHHH---HHHHHHCC-EEEEEecCCCCCCCCCCCCCHHHHHH----HHHHHHHhcCCCcCeEEE
Confidence 455533 56999998654 33222233 4566564322 222222 56554332 333222 23555667766
Q ss_pred Eecc
Q 020745 165 FSDF 168 (322)
Q Consensus 165 ~~ns 168 (322)
....
T Consensus 72 ~~~~ 75 (163)
T cd02166 72 IPVP 75 (163)
T ss_pred EecC
Confidence 5433
No 157
>TIGR00456 argS arginyl-tRNA synthetase. This model recognizes arginyl-tRNA synthetase in every completed genome to date. An interesting feature of the alignment of all arginyl-tRNA synthetases is a fairly deep split between two families. One family includes archaeal, eukaryotic and organellar, spirochete, E. coli, and Synechocystis sp. The second, sharing a deletion of about 25 residues in the central region relative to the first, includes Bacillus subtilis, Aquifex aeolicus, the Mycoplasmas and Mycobacteria, and the Gram-negative bacterium Helicobacter pylori.
Probab=41.44 E-value=30 Score=36.05 Aligned_cols=40 Identities=20% Similarity=0.409 Sum_probs=26.5
Q ss_pred EEEeeccCCCCcchhhhHHHH----HHHHHHHhCCceEEE--EeeCcc
Q 020745 88 LYTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVI--QLTDDE 129 (322)
Q Consensus 88 vytG~~PSg~slHlGhli~~~----~~~~lQ~~~g~~v~I--~IaD~~ 129 (322)
=|++--|++ .|||||+-..+ +.+++. +.|..|.- -|+|+=
T Consensus 117 e~~spn~~~-~~hiGh~r~~~~gd~l~r~~~-~~g~~v~r~~yinD~G 162 (566)
T TIGR00456 117 EFSSANPAG-PLHIGHLRNAIIGDSLARILE-FLGYDVIREYYVNDWG 162 (566)
T ss_pred EecCCCCCC-CCchhhhHHHHHHHHHHHHHH-HCCCCeeEEeeecchH
Confidence 378889998 89999988754 334444 44655443 467753
No 158
>PTZ00399 cysteinyl-tRNA-synthetase; Provisional
Probab=41.32 E-value=7.9 Score=41.19 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=18.7
Q ss_pred eeeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 261 ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 261 ~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
..+|+-+| .+.| +|||||. +|.|.+.|
T Consensus 302 y~~H~G~L-~i~G--~KMSKSL-GNfItp~d 328 (651)
T PTZ00399 302 YFLHSGHL-HIKG--LKMSKSL-KNFITIRQ 328 (651)
T ss_pred EEEEEEEE-Eecc--chhhhcC-CCcccHHH
Confidence 34454443 3554 8999998 89998765
No 159
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=41.29 E-value=3e+02 Score=25.64 Aligned_cols=133 Identities=21% Similarity=0.313 Sum_probs=64.2
Q ss_pred ccccCcccCCCCccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCcee----------ecCCHHHHHHHHHh--C
Q 020745 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFF----------AHRDLNDILDAYEK--G 83 (322)
Q Consensus 16 ~~~pw~v~~~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~----------~~~d~~~ll~~~~~--~ 83 (322)
.+|||.-.+ .|||+.+-+ +++.+-+- | . .|++. +..+..++++...+ +
T Consensus 9 ~~TPf~~dg--~id~~~~~~----------~i~~l~~~-G--v-----~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~ 68 (289)
T PF00701_consen 9 LITPFNADG--SIDEDALKR----------LIDFLIEA-G--V-----DGLVVLGSTGEFYSLTDEERKELLEIVVEAAA 68 (289)
T ss_dssp E---BETTS--SB-HHHHHH----------HHHHHHHT-T--S-----SEEEESSTTTTGGGS-HHHHHHHHHHHHHHHT
T ss_pred eeCCCCCCc--CcCHHHHHH----------HHHHHHHc-C--C-----CEEEECCCCcccccCCHHHHHHHHHHHHHHcc
Confidence 589998776 999987755 34333320 1 0 12221 11223334443321 3
Q ss_pred CceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 020745 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (322)
Q Consensus 84 ~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~ 163 (322)
.++.++.|....+ ---.+.+.++.|+. |+..++++. |. ..+ .+.+++.++.+..+ -+.++ ..+
T Consensus 69 ~~~~vi~gv~~~s------t~~~i~~a~~a~~~-Gad~v~v~~-P~--~~~-~s~~~l~~y~~~ia---~~~~~---pi~ 131 (289)
T PF00701_consen 69 GRVPVIAGVGANS------TEEAIELARHAQDA-GADAVLVIP-PY--YFK-PSQEELIDYFRAIA---DATDL---PII 131 (289)
T ss_dssp TSSEEEEEEESSS------HHHHHHHHHHHHHT-T-SEEEEEE-ST--SSS-CCHHHHHHHHHHHH---HHSSS---EEE
T ss_pred CceEEEecCcchh------HHHHHHHHHHHhhc-CceEEEEec-cc--ccc-chhhHHHHHHHHHH---hhcCC---CEE
Confidence 4567888988654 12234456778875 776555443 53 222 67777776543333 23333 356
Q ss_pred EEecccccccccH-HHHHHHHcc
Q 020745 164 IFSDFDYVGGAFY-KNMVKVAKC 185 (322)
Q Consensus 164 I~~ns~~~~~~~~-~~~~~l~k~ 185 (322)
+|++-.+.+..+- ..+.+++++
T Consensus 132 iYn~P~~tg~~ls~~~l~~L~~~ 154 (289)
T PF00701_consen 132 IYNNPARTGNDLSPETLARLAKI 154 (289)
T ss_dssp EEEBHHHHSSTSHHHHHHHHHTS
T ss_pred EEECCCccccCCCHHHHHHHhcC
Confidence 7776545443332 233446653
No 160
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=41.04 E-value=21 Score=36.53 Aligned_cols=54 Identities=11% Similarity=0.044 Sum_probs=40.2
Q ss_pred cccccccChhhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecC
Q 020745 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVT 290 (322)
Q Consensus 233 ~lvp~G~DQd~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~ 290 (322)
+.|..|.|+-..--.-+-|.+-+|.+.|...|.++|-+-+ |+||||+.. ++.+.
T Consensus 208 THviRG~d~~~nt~~q~~l~~~lg~~~P~~~H~~li~~~~--g~kLSKr~~--~~~~~ 261 (472)
T COG0008 208 THVLRGEDHLDNTPRQIWLYEALGWPPPVYAHLPLLLNED--GKKLSKRKG--AVSIG 261 (472)
T ss_pred ceEEechhhccCCHHHHHHHHHcCCCCCcEEEeeeeecCC--CCeecCccC--ccccc
Confidence 5677898866555555677888999999988988887733 579999973 55444
No 161
>COG0525 ValS Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=40.75 E-value=23 Score=38.91 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=23.6
Q ss_pred cCCCCcchhhhHHHH---HHHHHHHhCCceEEEEeeCccc
Q 020745 94 PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDEK 130 (322)
Q Consensus 94 PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~IaD~~~ 130 (322)
+|| +||+||.+..- ++.++++.-|..+..+-|=+|+
T Consensus 44 VTG-~LHmGHAl~~tl~D~l~RykRM~G~~vl~~pG~DhA 82 (877)
T COG0525 44 VTG-SLHMGHALNYTLQDILARYKRMRGYNVLWPPGTDHA 82 (877)
T ss_pred CCC-cccchhhhhHHHHHHHHHHHHcCCCeeecCCCCCCC
Confidence 488 99999988632 4444555547666666665653
No 162
>PRK14534 cysS cysteinyl-tRNA synthetase; Provisional
Probab=39.96 E-value=18 Score=37.21 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=17.5
Q ss_pred eecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 263 IESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 263 l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
+|+-++ .+.| +|||||. +|.|++.|
T Consensus 268 ~H~g~l-~~~g--~KMSKSl-GN~i~l~d 292 (481)
T PRK14534 268 VHGEFL-IMEY--EKMSKSN-NNFITIKD 292 (481)
T ss_pred EEecEE-EecC--ceecccC-CCcccHHH
Confidence 444444 3554 8999999 88998844
No 163
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=39.79 E-value=2.8e+02 Score=26.62 Aligned_cols=113 Identities=17% Similarity=0.230 Sum_probs=72.1
Q ss_pred CCCCCCHHHHHHHHHhhCCCchhhhhcCceeecCCHHHHHHHHHhCCceEEEEeeccCCCCcchhhhHHHHHHHHHHHhC
Q 020745 38 GCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAF 117 (322)
Q Consensus 38 g~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~ 117 (322)
|.-+=+++....|+.|++. .| .=|=.=-.|.-++.++.+.++ .+|.+..|+=|+- ..|=+---.+ +..+++. +
T Consensus 57 GtCKSa~~~~sDLe~l~~~-t~--~IR~Y~sDCn~le~v~pAa~~-~g~kv~lGiw~td-d~~~~~~~ti-l~ay~~~-~ 129 (305)
T COG5309 57 GTCKSADQVASDLELLASY-TH--SIRTYGSDCNTLENVLPAAEA-SGFKVFLGIWPTD-DIHDAVEKTI-LSAYLPY-N 129 (305)
T ss_pred CCCcCHHHHHhHHHHhccC-Cc--eEEEeeccchhhhhhHHHHHh-cCceEEEEEeecc-chhhhHHHHH-HHHHhcc-C
Confidence 4445566677777777665 33 112222456678888888776 5699999999996 7875543222 3445654 3
Q ss_pred Cce--EEEEeeCcccccccC-CCHHHHHHHHHHHHHHHHHcCCCC
Q 020745 118 KVP--LVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDV 159 (322)
Q Consensus 118 g~~--v~I~IaD~~~~l~r~-~~~e~i~~~~~~~~~~iiA~G~dp 159 (322)
+-+ ..|.+| -|+ ++|+ ++.+++-++.......+.+.|++-
T Consensus 130 ~~d~v~~v~VG-nEa-l~r~~~tasql~~~I~~vrsav~~agy~g 172 (305)
T COG5309 130 GWDDVTTVTVG-NEA-LNRNDLTASQLIEYIDDVRSAVKEAGYDG 172 (305)
T ss_pred CCCceEEEEec-hhh-hhcCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 433 344555 445 6666 999999888766655566789874
No 164
>KOG1149 consensus Glutamyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis]
Probab=37.42 E-value=91 Score=31.81 Aligned_cols=43 Identities=19% Similarity=0.333 Sum_probs=29.3
Q ss_pred eEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcc
Q 020745 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (322)
Q Consensus 86 ~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~ 129 (322)
+++=.-=-||| -||||-+-..++.-.+.+..|..+++-|-|-.
T Consensus 34 VRvRFAPSPTG-fLHlGgLRTALfNYLfArk~gGkFiLRiEDTD 76 (524)
T KOG1149|consen 34 VRVRFAPSPTG-FLHLGGLRTALFNYLFARKKGGKFILRIEDTD 76 (524)
T ss_pred eEEeecCCCCc-ceehhhHHHHHHHHHHHHhcCCeEEEEecccc
Confidence 33433445788 89999999885443366666777888776654
No 165
>PF00749 tRNA-synt_1c: tRNA synthetases class I (E and Q), catalytic domain; InterPro: IPR020058 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Glutamyl-tRNA synthetase (6.1.1.17 from EC) is a class Ic synthetase and shows several similarities with glutaminyl-tRNA synthetase concerning structure and catalytic properties. It is an alpha2 dimer. To date one crystal structure of a glutamyl-tRNA synthetase (Thermus thermophilus) has been solved. The molecule has the form of a bent cylinder and consists of four domains. The N-terminal half (domains 1 and 2) contains the 'Rossman fold' typical for class I synthetases and resembles the corresponding part of Escherichia coli GlnRS, whereas the C-terminal half exhibits a GluRS-specific structure []. ; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0016876 ligase activity, forming aminoacyl-tRNA and related compounds, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 2HZ7_A 2CFO_A 4A91_A 1NZJ_A 1N78_A 1G59_C 2CV2_A 2CV1_A 2CV0_B 1GLN_A ....
Probab=37.33 E-value=30 Score=33.29 Aligned_cols=69 Identities=14% Similarity=0.271 Sum_probs=42.2
Q ss_pred ccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 020745 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (322)
Q Consensus 93 ~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (322)
.||| .|||||+..++ .+| +.+..|..+++-|=|.-. .| ..+ .....++.++..+|++++. -++.||+..
T Consensus 9 sPtG-~lHiG~~r~al-~n~~~Ar~~~G~~iLRieDtD~--~R--~~~---~~~~~i~~~L~wlGl~~D~-~~~~QS~r~ 78 (314)
T PF00749_consen 9 SPTG-YLHIGHARTAL-LNYLFARKYGGKFILRIEDTDP--ER--CRP---EFYDAILEDLRWLGLEWDY-GPYYQSDRL 78 (314)
T ss_dssp -SSS-S-BHHHHHHHH-HHHHHHHHTTSEEEEEEETSST--TT--CHH---HHHHHHHHHHHHHT---ST-CEEEGGGGH
T ss_pred CCCC-CcccchhHHHH-HHHHHHhccCceEEEecccccc--cc--chh---hHHHHHHhheeEEEEecCC-eEEeHHHHH
Confidence 5898 89999999996 556 666677788888766542 12 222 2333466777778998863 245687764
No 166
>TIGR00234 tyrS tyrosyl-tRNA synthetase. This tyrosyl-tRNA synthetase model starts picking up tryptophanyl-tRNA synthetases at scores of 0 and below. The proteins found by this model have a deep split between two groups. One group contains bacterial and organellar eukaryotic examples. The other contains archaeal and cytosolic eukaryotic examples.
Probab=37.15 E-value=19 Score=35.74 Aligned_cols=44 Identities=14% Similarity=0.158 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhCCCCceeeecc---cccCCCCCCCcCCCCCC--CCeeec
Q 020745 245 FRMTRDVAPRIGYHKPALIESS---FFPALQGETGKMSASDP--NSAIYV 289 (322)
Q Consensus 245 ~~ltrdla~k~~~~kp~~l~~~---~lp~L~G~~~KMSkS~p--~~aI~L 289 (322)
..|+|++..+..+..|..++.. ..+|.++ ++|||.|.+ +++||+
T Consensus 195 ~dLar~~~~~~~~~~t~pLl~~~dg~KmgKS~-~~~i~l~~~~~~~~i~~ 243 (377)
T TIGR00234 195 RDLIRRNLPSLGFGLTVPLLTPADGEKMGKSG-GGAVSLDEGKYDFYQFW 243 (377)
T ss_pred HHHHHHhcCCCceeeceeeecCCCCCCccCCC-CCcccCCccHhhhhhhh
Confidence 4588888887777677667655 7888886 589999986 578876
No 167
>PF06574 FAD_syn: FAD synthetase; InterPro: IPR015864 Riboflavin is converted into catalytically active cofactors (FAD and FMN) by the actions of riboflavin kinase (2.7.1.26 from EC), which converts it into FMN, and FAD synthetase (2.7.7.2 from EC), which adenylates FMN to FAD. Eukaryotes usually have two separate enzymes, while most prokaryotes have a single bifunctional protein that can carry out both catalyses, although exceptions occur in both cases. While eukaryotic monofunctional riboflavin kinase is orthologous to the bifunctional prokaryotic enzyme [], the monofunctional FAD synthetase differs from its prokaryotic counterpart, and is instead related to the PAPS-reductase family []. The bacterial FAD synthetase that is part of the bifunctional enzyme has remote similarity to nucleotidyl transferases and, hence, it may be involved in the adenylylation reaction of FAD synthetases []. This entry represents prokaryotic-type FAD synthetase, which occurs primarily as part of a bifunctional enzyme.; GO: 0003919 FMN adenylyltransferase activity, 0009231 riboflavin biosynthetic process; PDB: 2X0K_B 3OP1_B 1T6Z_A 2I1L_A 1T6Y_B 1T6X_B 1S4M_A 1MRZ_A.
Probab=36.83 E-value=85 Score=27.02 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=24.8
Q ss_pred CceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcc
Q 020745 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (322)
Q Consensus 84 ~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~ 129 (322)
++..+-.|.- |.+|+||---+-.+..+.+..+.+.+++.=|+|
T Consensus 5 ~~~~v~iG~F---DGvH~GHq~Li~~~~~~a~~~~~~~~v~tF~~~ 47 (157)
T PF06574_consen 5 KKSVVAIGNF---DGVHLGHQKLIKKAVEIAKEKGLKSVVLTFDPH 47 (157)
T ss_dssp S-EEEEES-----TT--HHHHHHHHHHHHHHHHCT-EEEEEEESS-
T ss_pred CCcEEEEeCC---CCccHHHHHHHHHHhhhhhhcccceEEEEcccC
Confidence 4566667765 679999987776666665555766666656766
No 168
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=36.29 E-value=29 Score=38.09 Aligned_cols=54 Identities=24% Similarity=0.266 Sum_probs=35.0
Q ss_pred ccccccChhhHHHHHHHH--HHHhCCCCce--eeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 234 LIPCAIDQDPYFRMTRDV--APRIGYHKPA--LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 234 lvp~G~DQd~~~~ltrdl--a~k~~~~kp~--~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
++--|-| -=+|=.+|-+ .-++...-|. ++.|+++..-+| .|||||- +|.|.-.|
T Consensus 549 llETG~D-ILfFWVaRMvmLg~kLtG~lPF~~V~LH~mVRDa~G--RKMSKSL-GNVIDPlD 606 (995)
T KOG0432|consen 549 LLETGHD-ILFFWVARMVMLGLKLTGELPFKEVLLHGLVRDAHG--RKMSKSL-GNVIDPLD 606 (995)
T ss_pred hhhcCch-HHHHHHHHHHHhhhhhcCCCCchheeechhhccccc--cccchhh-ccccCHHH
Confidence 3445666 4455555543 3455555553 356888888886 9999999 88886544
No 169
>PLN02381 valyl-tRNA synthetase
Probab=35.17 E-value=46 Score=37.63 Aligned_cols=61 Identities=16% Similarity=0.111 Sum_probs=37.2
Q ss_pred hhhhcCceeecCCHHHHHHHHHhCCceEEEEeec-cCCCCcchhhhHHHH---HHHHHHHhCCceEEEEeeCcc
Q 020745 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (322)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~-PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~IaD~~ 129 (322)
...+.|+|....+ ..+++|++.+|.= +|| .||+||.+... ++.++++.-|..+....|-+|
T Consensus 112 ~W~~~~~f~~~~~--------~~~~~f~i~~ppPy~nG-~lHiGHa~~~ti~Dii~Ry~rm~G~~vl~~~G~D~ 176 (1066)
T PLN02381 112 WWEKSGYFGADAK--------SSKPPFVIVLPPPNVTG-ALHIGHALTAAIEDTIIRWKRMSGYNALWVPGVDH 176 (1066)
T ss_pred HHHHCCCccCCcc--------CCCCcEEEEeCCCCCCC-CccHHHHHHHHHHHHHHHHHHhCCCcccccCCCCC
Confidence 3455677654221 1345688888874 566 89999988643 344455555766666555444
No 170
>PRK14900 valS valyl-tRNA synthetase; Provisional
Probab=33.91 E-value=39 Score=38.04 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=30.5
Q ss_pred CCceEEEEeec-cCCCCcchhhhHHHH---HHHHHHHhCCceEEEEeeCcc
Q 020745 83 GEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (322)
Q Consensus 83 ~~~~~vytG~~-PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~IaD~~ 129 (322)
+++|+++.|.= +|| .||+||.+... ++.++++.-|..+....|-+|
T Consensus 47 ~~~f~i~~pPP~~nG-~lHiGH~~~~~~~Di~~Ry~rm~G~~vl~~~G~D~ 96 (1052)
T PRK14900 47 RPPFSIVLPPPNVTG-SLHLGHALTATLQDVLIRWKRMSGFNTLWLPGTDH 96 (1052)
T ss_pred CCCEEEecCCCCCCC-cchHHHHHhhHHHHHHHHHHHhcCCcccCCCCCCc
Confidence 45688888874 576 89999988643 334455555766665555444
No 171
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.19 E-value=49 Score=34.82 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=26.4
Q ss_pred EEeeccCCCCcchhhhHHHH----HHHHHHHhCCceEEE--EeeCcc
Q 020745 89 YTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVI--QLTDDE 129 (322)
Q Consensus 89 ytG~~PSg~slHlGhli~~~----~~~~lQ~~~g~~v~I--~IaD~~ 129 (322)
|+.--||| .|||||+-..+ +.+-|.- .|..|+- -|+|+=
T Consensus 123 ~sSaNptk-plHiGHlR~aiiGDsLaril~~-~Gy~V~r~~yvnD~G 167 (577)
T COG0018 123 YSSANPTG-PLHIGHLRNAIIGDSLARILEF-LGYDVTRENYVNDWG 167 (577)
T ss_pred EeCCCCCC-CcccchhhhhHHHHHHHHHHHH-cCCCeeEEeeECcHH
Confidence 88889999 79999988754 2333544 4655544 367764
No 172
>PLN02660 pantoate--beta-alanine ligase
Probab=31.06 E-value=76 Score=30.35 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHh
Q 020745 242 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKII 301 (322)
Q Consensus 242 d~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~ 301 (322)
-|-..+.|.+++.++.+- .++-.+++.--+| ==||+- ..||+++..+..-.|-
T Consensus 157 ~QQl~vIrrmV~dL~~~v-~I~~~ptvRe~dG--LA~SSR----N~yLs~~eR~~A~~l~ 209 (284)
T PLN02660 157 YQQWRVIRRMVRDLDFDI-EVVGSPIVREADG--LAMSSR----NVRLSAEEREKALSIS 209 (284)
T ss_pred HHHHHHHHHHHHHcCCCc-eEEeeCceECCCC--Ceeccc----cccCCHHHHHHHHHHH
Confidence 566777799999998742 2334677776665 467764 3466665555444443
No 173
>PLN02843 isoleucyl-tRNA synthetase
Probab=30.99 E-value=1.3e+02 Score=33.75 Aligned_cols=44 Identities=25% Similarity=0.277 Sum_probs=26.9
Q ss_pred hCCceEEEEee-ccCCCCcchhhhHHHH---HHHHHHHhCCceEEEEee
Q 020745 82 KGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT 126 (322)
Q Consensus 82 ~~~~~~vytG~-~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~Ia 126 (322)
++++|.+..|. -++| .+||||.+... ++.++++.-|..+....|
T Consensus 30 ~~~~f~i~~~PPy~nG-~lHiGHa~~~~lkDii~Ry~rm~G~~v~~~pG 77 (974)
T PLN02843 30 NGESFTLHDGPPYANG-DLHIGHALNKILKDFINRYQLLQGKKVHYVPG 77 (974)
T ss_pred CCCCEEEeCCCCCCCC-CcchhHHHHHHHHHHHHHHHHhcCCccccCCc
Confidence 35677777776 3577 89999998753 333344444555544333
No 174
>cd02064 FAD_synthetase_N FAD synthetase, N-terminal domain of the bifunctional enzyme. FAD synthetase_N. N-terminal domain of the bifunctional riboflavin biosynthesis protein riboflavin kinase/FAD synthetase. These enzymes have both ATP:riboflavin 5'-phosphotransferase and ATP:FMN-adenylyltransferase activities. The N-terminal domain is believed to play a role in the adenylylation reaction of FAD synthetases. The C-terminal domain is thought to have kinase activity. FAD synthetase is present among all kingdoms of life. However, the bifunctional enzyme is not found in mammals, which use separate enzymes for FMN and FAD formation.
Probab=30.87 E-value=72 Score=27.83 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=22.6
Q ss_pred CCcchhhhHHHHHHHHHHHhCCceEEEEeeCcc
Q 020745 97 EALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (322)
Q Consensus 97 ~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~ 129 (322)
|.+|+||.-.+-.++.+.+..+...+++.-|++
T Consensus 9 DgvH~GH~~ll~~a~~~a~~~~~~~vvv~f~~~ 41 (180)
T cd02064 9 DGVHLGHQALIKTLKKIARERGLPSAVLTFDPH 41 (180)
T ss_pred CccCHHHHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 579999988776666665544555556555766
No 175
>TIGR00125 cyt_tran_rel cytidyltransferase-related domain. Protein families that contain at least one copy of this domain include citrate lyase ligase, pantoate-beta-alanine ligase, glycerol-3-phosphate cytidyltransferase, ADP-heptose synthase, phosphocholine cytidylyltransferase, lipopolysaccharide core biosynthesis protein KdtB, the bifunctional protein NadR, and a number whose function is unknown. Many of these proteins are known to use CTP or ATP and release pyrophosphate.
Probab=29.42 E-value=95 Score=21.75 Aligned_cols=27 Identities=26% Similarity=0.581 Sum_probs=16.7
Q ss_pred CCcchhhhHHHHHHHHHHHhCCceEEEEeeC
Q 020745 97 EALHLGHLVPFMFTKYLQDAFKVPLVIQLTD 127 (322)
Q Consensus 97 ~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD 127 (322)
+.+|.||...+ ++..+.++ .+++.|+-
T Consensus 9 dp~H~GH~~~l---~~a~~~~~-~~vv~i~~ 35 (66)
T TIGR00125 9 DPFHLGHLDLL---ERAKELFD-ELIVGVGS 35 (66)
T ss_pred CCCCHHHHHHH---HHHHHhCC-EEEEEECc
Confidence 57999997654 44444445 56666643
No 176
>COG0495 LeuS Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.76 E-value=30 Score=37.82 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=13.2
Q ss_pred CCcCCCCCCCCeeecCC
Q 020745 275 TGKMSASDPNSAIYVTD 291 (322)
Q Consensus 275 ~~KMSkS~p~~aI~L~D 291 (322)
|+|||||. +|.|-+++
T Consensus 577 g~KMSKSK-gN~v~p~~ 592 (814)
T COG0495 577 GEKMSKSK-GNVVDPEE 592 (814)
T ss_pred CCcccccc-CCCCCHHH
Confidence 58999999 88887665
No 177
>KOG2426 consensus Dihydroxyacetone kinase/glycerone kinase [Carbohydrate transport and metabolism]
Probab=27.62 E-value=7.2e+02 Score=25.89 Aligned_cols=60 Identities=25% Similarity=0.310 Sum_probs=38.7
Q ss_pred CceeecCCHHHHHHHHHh--CCceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceE-EEEeeCccc
Q 020745 65 GVFFAHRDLNDILDAYEK--GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPL-VIQLTDDEK 130 (322)
Q Consensus 65 gi~~~~~d~~~ll~~~~~--~~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v-~I~IaD~~~ 130 (322)
|=||+.-.-++|+.+++. +..=++..-.-=|||.+|+|-. .-=+++.|.++ ++.|||+.+
T Consensus 78 G~iFASPstkqI~aairaV~~~~GtLlIVKNYTGD~LhFGLA------aErara~G~~ve~v~vgDDva 140 (582)
T KOG2426|consen 78 GDIFASPSTKQILAAIRAVEGEAGTLLIVKNYTGDRLHFGLA------AERARAAGIKVELVAVGDDVA 140 (582)
T ss_pred cccccCCcHHHHHHHHHHhccCCceEEEEeccccceeehhhh------HHHHHhcCCceEEEEEccccc
Confidence 337888888888876653 2333456666678899998842 22234456555 446899876
No 178
>PRK12451 arginyl-tRNA synthetase; Reviewed
Probab=27.58 E-value=67 Score=33.56 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=26.2
Q ss_pred EEeeccCCCCcchhhhHHHH---HHHHHHHhCCceEEE--EeeCcc
Q 020745 89 YTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVI--QLTDDE 129 (322)
Q Consensus 89 ytG~~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I--~IaD~~ 129 (322)
|+.--|++ .||+||+-..+ .+..+-++.|..|.- -|+|+=
T Consensus 119 ~sSpNp~k-plHvGH~R~aiiGd~l~ril~~~G~~V~r~nyinD~G 163 (562)
T PRK12451 119 YSSPNIAK-PFSMGHLRSTMIGNALKHIAEKCGYEVVGINYIGDWG 163 (562)
T ss_pred ecCCCCCC-CcccchhhhHHHHHHHHHHHHHCCCCeEEEeeecCch
Confidence 88889998 89999988654 233333344655543 367764
No 179
>cd02167 NMNAT_NadR Nicotinamide/nicotinate mononucleotide adenylyltransferase of bifunctional NadR-like proteins. NMNAT domain of NadR protein. The NadR protein (NadR) is a bifunctional enzyme possessing both NMN adenylytransferase (NMNAT) and ribosylnicotinamide kinase (RNK) activities. Its function is essential for the growth and survival of H. influenzae and thus may present a new highly specific anti-infectious drug target. The N-terminal domain that hosts the NMNAT activity is closely related to archaeal NMNAT. The bound NAD at the active site of the NMNAT domain reveals several critical interactions between NAD and the protein.The NMNAT domain of hiNadR defines yet another member of the pyridine nucleotide adenylyltransferase
Probab=27.21 E-value=1.8e+02 Score=24.97 Aligned_cols=49 Identities=22% Similarity=0.283 Sum_probs=25.3
Q ss_pred EEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccc-cC-CCHHHHHH
Q 020745 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMW-KN-LSVEESQR 143 (322)
Q Consensus 88 vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~-r~-~~~e~i~~ 143 (322)
+|.|.- +.+|+||+..+ ++..+..+ .++|+++-....-. +. .+.++-.+
T Consensus 3 l~~G~F---~P~H~GHl~li---~~a~~~~d-~v~vi~~~~~~~~~~~~~~~~~~R~~ 53 (158)
T cd02167 3 IVFGKF---APLHTGHVYLI---YKALSQVD-ELLIIVGSDDTRDDARTGLPLEKRLR 53 (158)
T ss_pred EEeecc---CCCCHHHHHHH---HHHHHHCC-EEEEEECCCCcccccCCCCCHHHHHH
Confidence 555543 57999998754 33222233 46666654432211 22 56655443
No 180
>TIGR01527 arch_NMN_Atrans nicotinamide-nucleotide adenylyltransferase. In some archaeal species, a lower-scoring paralog, uncharacterized with respect to activity, is also present. These score between trusted and noise cutoffs.
Probab=26.64 E-value=2.4e+02 Score=24.53 Aligned_cols=46 Identities=28% Similarity=0.525 Sum_probs=23.7
Q ss_pred EEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcc-cccccC-CCHHH
Q 020745 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE-KCMWKN-LSVEE 140 (322)
Q Consensus 88 vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~-~~l~r~-~~~e~ 140 (322)
+|.|.- +.+|+||+-.+ ++..+..+ .++|.|+... .+..++ .+.++
T Consensus 3 l~~G~F---dP~H~GHl~ii---~~a~~~~D-~lii~i~s~~~~~k~~~p~~~~e 50 (165)
T TIGR01527 3 FYIGRF---QPFHLGHLEVI---KKIAEEVD-ELIIGIGSAQESHTLENPFTAGE 50 (165)
T ss_pred EEEecc---CCCCHHHHHHH---HHHHHHCC-EEEEEEcCCCCCCCCCCCCCHHH
Confidence 445533 56999998644 44333333 3555554433 332233 66643
No 181
>TIGR00395 leuS_arch leucyl-tRNA synthetase, archaeal and cytosolic family. The leucyl-tRNA synthetases belong to two families so broadly different that they are represented by separate models. This model includes both archaeal and cytosolic eukaryotic leucyl-tRNA synthetases; the eubacterial and mitochondrial forms differ so substantially that some other tRNA ligases score higher by this model than does any eubacterial LeuS.
Probab=26.13 E-value=37 Score=37.74 Aligned_cols=40 Identities=20% Similarity=0.322 Sum_probs=26.2
Q ss_pred CCceEEEEeec-cCCCCcchhhhHHHH---HHHHHHHhCCceEEE
Q 020745 83 GEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVI 123 (322)
Q Consensus 83 ~~~~~vytG~~-PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I 123 (322)
+++|++.+|.= +|| .||+||..... ++.++|+.-|..+..
T Consensus 24 ~~kf~i~~ppPy~nG-~lH~GH~~~~~~~D~~aRy~Rm~G~~vl~ 67 (938)
T TIGR00395 24 REKFFLTMAYPYLNG-VMHAGHCRTFTIPEVSARFERMKGKNVLF 67 (938)
T ss_pred CCceEEecCCCCCCC-CcccchhhhhhHHHHHHHHHHhcCCccCC
Confidence 35677777763 466 89999988753 444566655655544
No 182
>TIGR00124 cit_ly_ligase [citrate (pro-3S)-lyase] ligase. ATP is cleaved to AMP and pyrophosphate during the reaction. The carboxyl end is homologous to a number of cytidyltransferases that also release pyrophosphate.
Probab=26.03 E-value=1e+02 Score=30.04 Aligned_cols=62 Identities=18% Similarity=0.276 Sum_probs=34.6
Q ss_pred cHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCceeecCCHHHHHHHHH----hCCceEEEEeeccCCCCcchhhh
Q 020745 29 DYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYE----KGEKFYLYTGRGPSSEALHLGHL 104 (322)
Q Consensus 29 dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~----~~~~~~vytG~~PSg~slHlGhl 104 (322)
+|.++.+++|=..+... + ..+.+|+.|. .++..-++.+. .+++..+|.| |.+.+|+||+
T Consensus 94 ~~~~fy~klGF~~i~~~-----~-----~~~v~mE~~~----~~~~~y~~~l~~~~~~~~~i~~~~g---~fdP~t~GH~ 156 (332)
T TIGR00124 94 EYAALFEYCGFKTLAEA-----K-----DQGVLLENSA----TRLKRYCSTLPKPRTPGNKIGSIVM---NANPFTNGHR 156 (332)
T ss_pred hHHHHHHHcCCEEeeee-----c-----ceEEEEeccC----cCHHHHHHHHHHhccCCCcEEEEEe---CcCCCchHHH
Confidence 45566666665444321 0 0234555554 24444444443 2346777777 5689999997
Q ss_pred HHH
Q 020745 105 VPF 107 (322)
Q Consensus 105 i~~ 107 (322)
--+
T Consensus 157 ~li 159 (332)
T TIGR00124 157 YLI 159 (332)
T ss_pred HHH
Confidence 644
No 183
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=25.71 E-value=4.2e+02 Score=25.84 Aligned_cols=69 Identities=20% Similarity=0.382 Sum_probs=36.0
Q ss_pred HHHHHHHhhCCCchhhhhcCceeecCCHHHHHHHHHh-CCc---eEE-EEeec-cCCCCcchhhhHHHHHHHHHHHhCCc
Q 020745 46 LVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEK-GEK---FYL-YTGRG-PSSEALHLGHLVPFMFTKYLQDAFKV 119 (322)
Q Consensus 46 ~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~-~~~---~~v-ytG~~-PSg~slHlGhli~~~~~~~lQ~~~g~ 119 (322)
||+.+-+ ||+ .-++.+|. -...+.+...+.+.+ |.+ +.+ -|... |+- .. -+-+..+.+|++.|++
T Consensus 125 LL~~~A~-~gk--PvilStGm-atl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~--~~---~~nL~~I~~Lk~~f~~ 195 (329)
T TIGR03569 125 LLKKIAR-FGK--PVILSTGM-ATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAP--FE---DVNLNAMDTLKEAFDL 195 (329)
T ss_pred HHHHHHh-cCC--cEEEECCC-CCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCC--cc---cCCHHHHHHHHHHhCC
Confidence 5555554 455 35688888 344455555555543 322 433 13332 553 22 2333445678887887
Q ss_pred eEEE
Q 020745 120 PLVI 123 (322)
Q Consensus 120 ~v~I 123 (322)
||-.
T Consensus 196 pVG~ 199 (329)
T TIGR03569 196 PVGY 199 (329)
T ss_pred CEEE
Confidence 7664
No 184
>cd02173 ECT CTP:phosphoethanolamine cytidylyltransferase (ECT). CTP:phosphoethanolamine cytidylyltransferase (ECT) catalyzes the conversion of phosphoethanolamine to CDP-ethanolamine as part of the CDP-ethanolamine biosynthesis pathway. ECT expression in hepatocytes is localized predominantly to areas of the cytoplasm that are rich in rough endoplasmic reticulum. Several ECTs, including yeast and human ECT, have large repetitive sequences located within their N- and C-termini.
Probab=25.71 E-value=1.2e+02 Score=25.95 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=18.9
Q ss_pred CCcchhhhHHHHHHHHHHHhCCceEEEEeeCcc
Q 020745 97 EALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (322)
Q Consensus 97 ~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~ 129 (322)
|.+|.||+--+ +...+. |-.++|-|+.++
T Consensus 12 D~~H~GHi~~L---~~A~~l-gd~liVgV~~D~ 40 (152)
T cd02173 12 DLFHIGHIEFL---EKAREL-GDYLIVGVHDDQ 40 (152)
T ss_pred cCCCHHHHHHH---HHHHHc-CCEEEEEEeCcH
Confidence 68999997644 333332 556788777665
No 185
>PRK05627 bifunctional riboflavin kinase/FMN adenylyltransferase; Reviewed
Probab=25.38 E-value=83 Score=30.24 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=26.7
Q ss_pred eEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcc
Q 020745 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (322)
Q Consensus 86 ~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~ 129 (322)
..+..|.= |.+|+||.--+-.++.+.+..+.+.+++--|+|
T Consensus 15 ~vv~iG~F---DGvH~GHq~Ll~~a~~~a~~~~~~~~vitFd~~ 55 (305)
T PRK05627 15 CVLTIGNF---DGVHRGHQALLARAREIARERGLPSVVMTFEPH 55 (305)
T ss_pred EEEEEeeC---CcCCHHHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 34555544 579999987666566555545666666556877
No 186
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=25.08 E-value=5.7e+02 Score=23.92 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=67.6
Q ss_pred ccccCcccCCCCccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhc---Cceee--cCCHHHHHHHHH--hCCceEE
Q 020745 16 VVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRR---GVFFA--HRDLNDILDAYE--KGEKFYL 88 (322)
Q Consensus 16 ~~~pw~v~~~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~R---gi~~~--~~d~~~ll~~~~--~~~~~~v 88 (322)
.+||+.-++ .||++.+-+ +++++-+-.| .+-++=- |-++. ..+..++++... .+.++.+
T Consensus 11 ~~TPf~~dg--~iD~~~~~~----------li~~l~~~~G--v~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~v 76 (293)
T PRK04147 11 LLTPFDEDG--QIDEQGLRR----------LVRFNIEKQG--IDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKL 76 (293)
T ss_pred eECcCCCCC--CcCHHHHHH----------HHHHHHhcCC--CCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCE
Confidence 589998877 899987755 3433322001 1110000 01111 122233443321 1345678
Q ss_pred EEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecc
Q 020745 89 YTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDF 168 (322)
Q Consensus 89 ytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns 168 (322)
+.|....+ ---.+.+.+..++. |+..++++. |. ..+ .+.+++.++-++.+. +.++ .+.+|++.
T Consensus 77 iagvg~~~------t~~ai~~a~~a~~~-Gad~v~v~~-P~--y~~-~~~~~l~~~f~~va~---a~~l---Pv~iYn~P 139 (293)
T PRK04147 77 IAQVGSVN------TAEAQELAKYATEL-GYDAISAVT-PF--YYP-FSFEEICDYYREIID---SADN---PMIVYNIP 139 (293)
T ss_pred EecCCCCC------HHHHHHHHHHHHHc-CCCEEEEeC-Cc--CCC-CCHHHHHHHHHHHHH---hCCC---CEEEEeCc
Confidence 88886543 11223356777776 776666543 43 122 455666554333322 3444 46788765
Q ss_pred ccccccc-HHHHHHHHcccC
Q 020745 169 DYVGGAF-YKNMVKVAKCVT 187 (322)
Q Consensus 169 ~~~~~~~-~~~~~~l~k~~t 187 (322)
...+..+ ...+.+++++.+
T Consensus 140 ~~tg~~l~~~~l~~L~~~pn 159 (293)
T PRK04147 140 ALTGVNLSLDQFNELFTLPK 159 (293)
T ss_pred hhhccCCCHHHHHHHhcCCC
Confidence 4433222 233345665543
No 187
>PF01467 CTP_transf_2: Cytidylyltransferase; InterPro: IPR004820 This family includes []: Cholinephosphate cytidyltransferase (P49585 from SWISSPROT). Glycerol-3-phosphate cytidyltransferase (P27623 from SWISSPROT). CTP:cholinephosphate cytidylyltransferase (CCT) is a key regulatory enzyme in phosphatidylcholine biosynthesis that catalyzes the formation of CDP-choline. A comparison of the catalytic domains of CCTs from a wide variety of organisms reveals a large number of completely conserved residues. There may be a role for the conserved HXGH sequence in catalysis. The membrane-binding domain in rat CCT has been defined, and it has been suggested that lipids may play a role in inactivating the enzyme. A phosphorylation domain has been described [].; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1O6B_A 1H1T_A 1B6T_A 1GN8_A 1QJC_A 3ELB_A 3NBK_A 3NBA_A 1TFU_A 3LCJ_A ....
Probab=25.07 E-value=2.1e+02 Score=22.99 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=20.8
Q ss_pred CCcchhhhHHHHHHHHHHHhCCc-eEEEEeeCcccccc-cC-CCHHHHH
Q 020745 97 EALHLGHLVPFMFTKYLQDAFKV-PLVIQLTDDEKCMW-KN-LSVEESQ 142 (322)
Q Consensus 97 ~slHlGhli~~~~~~~lQ~~~g~-~v~I~IaD~~~~l~-r~-~~~e~i~ 142 (322)
+.+|.||+-.+ +...+.++. .++++.+|-+.... +. .+.++-.
T Consensus 7 dP~H~GH~~~l---~~a~~~~~~~~vi~v~~~~~~~k~~~~~~~~~~R~ 52 (157)
T PF01467_consen 7 DPPHNGHLNLL---REARELFDEDLVIVVPSDNSPHKDKKPIFSFEERL 52 (157)
T ss_dssp TT--HHHHHHH---HHHHHHSSESEEEEEEEEHHCHSTTSSSSTHHHHH
T ss_pred CcccHHHHHHH---HHHHHhccccccccccccccccccccccCcHHHHH
Confidence 67999998644 333333444 35555566553222 22 5555433
No 188
>PLN02286 arginine-tRNA ligase
Probab=24.78 E-value=65 Score=33.77 Aligned_cols=39 Identities=18% Similarity=0.327 Sum_probs=25.4
Q ss_pred EEeeccCCCCcchhhhHHHH----HHHHHHHhCCceEEE--EeeCcc
Q 020745 89 YTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVI--QLTDDE 129 (322)
Q Consensus 89 ytG~~PSg~slHlGhli~~~----~~~~lQ~~~g~~v~I--~IaD~~ 129 (322)
|+.--|++ .||+||+-..+ +.+-|.- .|..|.- -|+|+=
T Consensus 123 fsSpNp~k-plHvGHlRsaiiGdsLaril~~-~G~~V~r~nyinD~G 167 (576)
T PLN02286 123 FSSPNIAK-EMHVGHLRSTIIGDTLARMLEF-SGVEVLRRNHVGDWG 167 (576)
T ss_pred ecCCCCCC-CCccccccchhhHHHHHHHHHH-cCCceEEEEeecchH
Confidence 78889998 89999987653 2333444 4655443 366653
No 189
>TIGR00392 ileS isoleucyl-tRNA synthetase. The isoleucyl tRNA synthetase (IleS) is a class I amino acyl-tRNA ligase and is particularly closely related to the valyl tRNA synthetase. This model may recognize IleS from every species, including eukaryotic cytosolic and mitochondrial forms.
Probab=24.75 E-value=71 Score=35.06 Aligned_cols=43 Identities=14% Similarity=0.212 Sum_probs=28.0
Q ss_pred CCceEEEEeec-cCCCCcchhhhHHHH---HHHHHHHhCCceEEEEee
Q 020745 83 GEKFYLYTGRG-PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT 126 (322)
Q Consensus 83 ~~~~~vytG~~-PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~Ia 126 (322)
+++|+++.|.= ||| .||+||.+... ++.++++.-|..|....|
T Consensus 35 ~~~f~i~~~pPy~nG-~lH~GH~~~~~~~D~~~Ry~rm~G~~v~~~~G 81 (861)
T TIGR00392 35 KPEFIFHDGPPYANG-SIHLGHALNKILKDIILRYKTMQGFNVTRKPG 81 (861)
T ss_pred CCCeEEecCCCCCCC-CccHHHHHHHHHHHHHHHHHHcCCCccCCCCC
Confidence 45688998882 456 89999988643 344456655655554444
No 190
>cd00560 PanC Pantoate-beta-alanine ligase. PanC Pantoate-beta-alanine ligase, also known as pantothenate synthase, catalyzes the formation of pantothenate from pantoate and alanine. PanC belongs to a large superfamily of nucleotidyltransferases that includes , ATP sulfurylase (ATPS), phosphopantetheine adenylyltransferase (PPAT), and the amino-acyl tRNA synthetases. The enzymes of this family are structurally similar and share a dinucleotide-binding domain.
Probab=24.46 E-value=1.6e+02 Score=27.97 Aligned_cols=37 Identities=30% Similarity=0.418 Sum_probs=23.4
Q ss_pred eeecCCHHHHHHHHHh-CCceEEEEeeccCCCCcchhhhHHH
Q 020745 67 FFAHRDLNDILDAYEK-GEKFYLYTGRGPSSEALHLGHLVPF 107 (322)
Q Consensus 67 ~~~~~d~~~ll~~~~~-~~~~~vytG~~PSg~slHlGhli~~ 107 (322)
+.+..++...++...+ |++ .|+=||-+.+|.||.--+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~----ig~V~TmG~LH~GH~~LI 41 (277)
T cd00560 4 ITTIAELRAWLRNWRAQGKT----IGFVPTMGALHEGHLSLV 41 (277)
T ss_pred EccHHHHHHHHHHHHHcCCe----EEEEECCCcccHHHHHHH
Confidence 4445555555554433 333 577788889999997644
No 191
>cd02164 PPAT_CoAS phosphopantetheine adenylyltransferase domain of eukaryotic and archaeal bifunctional enzymes. The PPAT domain of the bifunctional enzyme with PPAT and DPCK functions. The final two steps of the CoA biosynthesis pathway are catalyzed by phosphopantetheine adenylyltransferase (PPAT) and dephospho-CoA (dPCoA) kinase (DPCK). The PPAT reaction involves the reversible adenylation of 4'-phosphopantetheine to form 3'-dPCoA and PPi, and DPCK catalyses phosphorylation of the 3'-hydroxy group of the ribose moiety of dPCoA. In eukaryotes the two enzymes are part of a large multienzyme complex . Studies in Corynebacterium ammoniagenes suggested that separate enzymes were present, and this was confirmed through identification of the bacterial PPAT/CoAD.
Probab=24.05 E-value=2.4e+02 Score=23.87 Aligned_cols=31 Identities=32% Similarity=0.410 Sum_probs=17.9
Q ss_pred CCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcc
Q 020745 96 SEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129 (322)
Q Consensus 96 g~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~ 129 (322)
=|.+|.||..-+..+..+- +..+.|.++.+.
T Consensus 8 FD~lH~GH~~Ll~~a~~~~---~d~v~vgvt~d~ 38 (143)
T cd02164 8 FDRLHDGHKILLSVAFLLA---GEKLIIGVTSDE 38 (143)
T ss_pred CCCCCHHHHHHHHHHHHHh---cCCcEEEEeCch
Confidence 3689999988664444332 223555555433
No 192
>COG0414 PanC Panthothenate synthetase [Coenzyme metabolism]
Probab=23.72 E-value=1e+02 Score=29.38 Aligned_cols=52 Identities=8% Similarity=0.181 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHH
Q 020745 242 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300 (322)
Q Consensus 242 d~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI 300 (322)
-|-..+.|.+.+.++.+- .++-.+++..-+| =-||+- ..||+.+...+.-.+
T Consensus 153 ~QQl~vIr~mV~DL~~~V-eIv~vptVRe~DG--LA~SSR----N~YLs~eeR~~A~~L 204 (285)
T COG0414 153 YQQLAVIRRMVADLNLPV-EIVGVPTVREEDG--LALSSR----NVYLSAEERKAAPAL 204 (285)
T ss_pred HHHHHHHHHHHHHcCCCe-EEEecceeEcCCc--cchhhc----cccCCHHHHHHHHHH
Confidence 566777899999998742 2234567776676 455553 467776655544433
No 193
>PRK13964 coaD phosphopantetheine adenylyltransferase; Provisional
Probab=23.50 E-value=2.9e+02 Score=23.47 Aligned_cols=48 Identities=21% Similarity=0.394 Sum_probs=25.4
Q ss_pred eEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEee-CcccccccCCCHHHHH
Q 020745 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLT-DDEKCMWKNLSVEESQ 142 (322)
Q Consensus 86 ~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~Ia-D~~~~l~r~~~~e~i~ 142 (322)
..+|.| |=+.+|.||+-.+ ++..+.++ .++|.++ +++|. ...+.++-.
T Consensus 3 iai~~G---SFDPih~GHl~ii---~~A~~~~D-~v~v~v~~np~K~--~~~s~e~R~ 51 (140)
T PRK13964 3 IAIYPG---SFDPFHKGHLNIL---KKALKLFD-KVYVVVSINPDKS--NASDLDSRF 51 (140)
T ss_pred EEEEee---eeCCCCHHHHHHH---HHHHHhCC-EEEEEeccCCCCC--CCCCHHHHH
Confidence 346666 3367999997644 44444455 3455555 44441 115555533
No 194
>COG0196 RibF FAD synthase [Coenzyme metabolism]
Probab=23.45 E-value=1.3e+02 Score=28.95 Aligned_cols=42 Identities=19% Similarity=0.228 Sum_probs=27.8
Q ss_pred eEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCccc
Q 020745 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEK 130 (322)
Q Consensus 86 ~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~ 130 (322)
-.+-.|.= |.+|+||--.+-.++..-++-+.|.+++.-+||-
T Consensus 17 ~~l~IG~F---DGvHlGHq~ll~~a~~~a~~~~~~~~VitF~p~P 58 (304)
T COG0196 17 CVLTIGNF---DGVHLGHQKLLAQALEAAEKRGLPVVVITFEPHP 58 (304)
T ss_pred cEEEEEcC---CccchhHHHHHHHHHHHHHHhCCceEEEEecCCC
Confidence 34555654 5799999755544443334457888888888884
No 195
>PRK12410 glutamylglutaminyl-tRNA synthetase; Provisional
Probab=22.21 E-value=64 Score=32.71 Aligned_cols=66 Identities=27% Similarity=0.222 Sum_probs=41.2
Q ss_pred cccccccChhhHHHHHHHHHHHhCCCCc-eeeecccccCCCCCCCcCCCCCCCCeeecCC------CHHHHHHHHhc
Q 020745 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKIIL 302 (322)
Q Consensus 233 ~lvp~G~DQd~~~~ltrdla~k~~~~kp-~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D------~p~~i~~KI~k 302 (322)
+.|.-|.|.-..--.-.-|.+-+|.+.| ...|.+++.+-+| +|+||.+. +..+.+ .|+.|.+=+..
T Consensus 192 ThViRG~d~l~~tp~Qi~Ly~aLg~~~pp~f~Hlpli~~~~g--~KLSKR~~--~~~v~~~r~~G~~PeAi~n~l~~ 264 (433)
T PRK12410 192 SLIIRGEDHVSNTPKQILIREALGYNKEITYAHLPIILNEEG--KKMSKRDN--ASSVKWLLEQGFLPSAIANYLIL 264 (433)
T ss_pred CEEEechhhhhCcHHHHHHHHHcCCCCCCeEEEeeeeeCCCC--CeeecccC--hhhHHHHHHCCCCHHHHHHHHHH
Confidence 4456677644333233556778998764 7788888877776 89999973 333332 56666655443
No 196
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=22.19 E-value=1.6e+02 Score=29.78 Aligned_cols=60 Identities=32% Similarity=0.558 Sum_probs=41.7
Q ss_pred EEeeccCCCCcchhhhHHHH-HHHHHHHhCCceE-EEEeeCcc-c-ccccCCCHHHHHHHHHHHHHHHHHcCCC
Q 020745 89 YTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPL-VIQLTDDE-K-CMWKNLSVEESQRLARENAKDIIACGFD 158 (322)
Q Consensus 89 ytG~~PSg~slHlGhli~~~-~~~~lQ~~~g~~v-~I~IaD~~-~-~l~r~~~~e~i~~~~~~~~~~iiA~G~d 158 (322)
|||+.|.- |. ++..+-+.-|.|. .|.+|=+| + .-++.++.++..+++.+.++.+++.||+
T Consensus 59 YTGmtP~d----------F~~~V~~iA~~~gf~~~~iiLGGDHLGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~ 122 (426)
T PRK15458 59 YTGMTPAD----------FRGFVCQLADSLNFPQEALILGGDHLGPNRWQNLPAAQAMANADDLIKSYVAAGFK 122 (426)
T ss_pred cCCCCHHH----------HHHHHHHHHHHcCCChhhEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 67777663 21 2333444458876 66667777 3 2245588899999999999999999995
No 197
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=22.03 E-value=1.7e+02 Score=30.41 Aligned_cols=36 Identities=31% Similarity=0.322 Sum_probs=24.3
Q ss_pred eeecCCHHHHHHHHHhCCceEEEEeeccCCCCcchhhhHHH
Q 020745 67 FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPF 107 (322)
Q Consensus 67 ~~~~~d~~~ll~~~~~~~~~~vytG~~PSg~slHlGhli~~ 107 (322)
+.+..++..++....+ + -.||=||-+.||=||+--+
T Consensus 4 ~~~~~~l~~~~~~~~~-~----~ig~VPTMG~LH~GHlsLi 39 (512)
T PRK13477 4 LRTVAGLRAWLRQQRS-E----TIGFVPTMGALHQGHLSLI 39 (512)
T ss_pred EecHHHHHHHHHHhcC-C----cEEEECCCcchhHHHHHHH
Confidence 4444555555554433 1 6799999999999997644
No 198
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.84 E-value=85 Score=34.64 Aligned_cols=34 Identities=18% Similarity=0.397 Sum_probs=21.5
Q ss_pred CCCCcchhhhHHHH----HHHHHHHhCCceEEEEeeCccc
Q 020745 95 SSEALHLGHLVPFM----FTKYLQDAFKVPLVIQLTDDEK 130 (322)
Q Consensus 95 Sg~slHlGhli~~~----~~~~lQ~~~g~~v~I~IaD~~~ 130 (322)
|| +|||||.+.+- +++| ++..|-.+--.-|-+|+
T Consensus 87 TG-~LHiGHALt~aiqD~i~R~-~rm~G~~vlw~PG~DHA 124 (995)
T KOG0432|consen 87 TG-SLHIGHALTVAIQDALARY-NRMHGYQVLWVPGTDHA 124 (995)
T ss_pred cc-ccchhHHHHHHHHHHHHHH-HHhcCCeeeecCCcccc
Confidence 77 99999988753 3334 44446665555566663
No 199
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=21.03 E-value=1.9e+02 Score=29.27 Aligned_cols=60 Identities=27% Similarity=0.498 Sum_probs=41.7
Q ss_pred EEeeccCCCCcchhhhHHHH-HHHHHHHhCCceE-EEEeeCcc-c-ccccCCCHHHHHHHHHHHHHHHHHcCCC
Q 020745 89 YTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPL-VIQLTDDE-K-CMWKNLSVEESQRLARENAKDIIACGFD 158 (322)
Q Consensus 89 ytG~~PSg~slHlGhli~~~-~~~~lQ~~~g~~v-~I~IaD~~-~-~l~r~~~~e~i~~~~~~~~~~iiA~G~d 158 (322)
|||..|.- |. ++..+-+.-|.+. .|.+|=+| + .-++.++.++..+++.+.++.+++.||+
T Consensus 55 YTGmtP~d----------F~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~lpa~eAM~~A~~li~ayV~AGF~ 118 (420)
T TIGR02810 55 YTGMTPAD----------FRDFVETIADRIGFPRDRLILGGDHLGPNPWQHLPADEAMAKAAALVDAYVEAGFT 118 (420)
T ss_pred cCCCCHHH----------HHHHHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 77777663 21 2333444457776 66667777 3 2245688999999999999999999995
No 200
>PF08013 Tagatose_6_P_K: Tagatose 6 phosphate kinase; InterPro: IPR012062 Escherichia coli and other enteric bacteria contain two closely related D-tagatose 1,6-bisphosphate (TagBP)-specific aldolases involved in catabolism of galactitol (genes gatY gatZ) and of N-acetyl-galactosamine and D-galactosamine (genes kbaY, kbaZ, also called agaY, agaZ). The catalytic subunits GatY/KbaY alone are sufficient to show aldolase activity and contain most or all of the residues that have been identified as essential in substrate/product recognition and catalysis for class II aldolases [, ]. However, these aldolases differ from other Class II aldolases (which are homodimeric enzymes) in that they require subunits GatZ/KbaZ for full activity and for good in vivo and in vitro stability. The Z subunits alone do not show any aldolase activity []. It should be noted that the previous suggestion of a tagatose 6P-kinase function for AgaZ [] and other members of this family turned out to be erroneous [, ].; GO: 0019402 galactitol metabolic process; PDB: 2FIQ_A 3TXV_A.
Probab=20.82 E-value=55 Score=33.03 Aligned_cols=48 Identities=27% Similarity=0.449 Sum_probs=31.8
Q ss_pred HHHHHhCCceE-EEEeeCcc-c-ccccCCCHHHHHHHHHHHHHHHHHcCCC
Q 020745 111 KYLQDAFKVPL-VIQLTDDE-K-CMWKNLSVEESQRLARENAKDIIACGFD 158 (322)
Q Consensus 111 ~~lQ~~~g~~v-~I~IaD~~-~-~l~r~~~~e~i~~~~~~~~~~iiA~G~d 158 (322)
..+-+..|+|. .|.+|=+| + .-++.++.++..+++++.++.+++.||+
T Consensus 72 ~~iA~~~g~~~~~iiLGGDHLGP~~w~~lpaeeAM~~A~~li~ayv~AGF~ 122 (424)
T PF08013_consen 72 REIADEVGFPRDRIILGGDHLGPNPWQHLPAEEAMAKAKELIRAYVEAGFT 122 (424)
T ss_dssp HHHHHHCT--GGGEEEEEEEESSCCCTTSBHHHHHHHHHHHHHHHHCTT--
T ss_pred HHHHHHcCCchhhEEecCCCCCcccccCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 33445567777 35555556 3 3445589999999999999999999995
No 201
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=20.53 E-value=40 Score=25.68 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=25.1
Q ss_pred eeCcccccccC-CCHHHHHHHHHHHHHHHHHcCCCC
Q 020745 125 LTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDV 159 (322)
Q Consensus 125 IaD~~~~l~r~-~~~e~i~~~~~~~~~~iiA~G~dp 159 (322)
.+||++++.+. +|.|+......--...++++|.+|
T Consensus 23 ~~dp~a~~~~~~Lt~eE~~al~~rD~~~L~~lG~~~ 58 (77)
T cd07321 23 KADPEAVLAEYGLTPEEKAALLARDVGALYVLGVNP 58 (77)
T ss_pred HhCHHHHHHHcCCCHHHHHHHHcCCHHHHHHcCCCH
Confidence 46899888776 999988776554555667777653
No 202
>PLN02959 aminoacyl-tRNA ligase
Probab=20.40 E-value=59 Score=36.79 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=19.5
Q ss_pred ccCCCCcchhhhHHHH---HHHHHHHhCCceEEE
Q 020745 93 GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVI 123 (322)
Q Consensus 93 ~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I 123 (322)
-++| .|||||.+... +..++|+.-|..+..
T Consensus 55 Y~NG-~lHiGHa~t~t~~D~i~Rykrm~G~~vlf 87 (1084)
T PLN02959 55 YMNG-LLHLGHAFSLSKLEFAAAYHRLRGANVLL 87 (1084)
T ss_pred CCCC-CcchhhHHHHHHHHHHHHHHHcCCCccCC
Confidence 3477 89999998753 444566654544433
Done!