Query 020745
Match_columns 322
No_of_seqs 237 out of 1529
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 07:34:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020745.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020745hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tze_A Tryptophanyl-tRNA synth 100.0 7.4E-89 2.5E-93 667.0 23.5 309 10-322 20-337 (406)
2 3hv0_A Tryptophanyl-tRNA synth 100.0 1.9E-88 6.4E-93 662.5 20.7 306 16-322 3-314 (393)
3 3i05_A Tryptophanyl-tRNA synth 100.0 2.3E-87 8E-92 655.2 22.5 305 14-322 9-317 (395)
4 3hzr_A Tryptophanyl-tRNA synth 100.0 1.5E-83 5.1E-88 626.3 24.1 293 15-312 12-304 (386)
5 3jxe_A Tryptophanyl-tRNA synth 100.0 5.3E-83 1.8E-87 623.5 25.3 295 13-322 3-301 (392)
6 2ip1_A Tryptophanyl-tRNA synth 100.0 9E-82 3.1E-86 622.3 22.6 312 10-321 20-342 (432)
7 1r6t_A Tryptophanyl-tRNA synth 100.0 8.5E-82 2.9E-86 629.2 22.0 312 10-321 78-396 (477)
8 1r6u_A Tryptophanyl-tRNA synth 100.0 5E-82 1.7E-86 623.8 19.0 305 10-314 31-339 (437)
9 3foc_A Tryptophanyl-tRNA synth 100.0 5.8E-81 2E-85 616.5 20.6 297 26-322 32-381 (451)
10 3a04_A Tryptophanyl-tRNA synth 100.0 4.9E-79 1.7E-83 593.3 18.4 288 12-315 1-293 (372)
11 3prh_A Tryptophanyl-tRNA synth 100.0 7.2E-55 2.5E-59 424.2 15.7 238 66-321 11-272 (388)
12 2cyc_A Tyrosyl-tRNA synthetase 100.0 1.3E-54 4.4E-59 422.3 15.2 237 59-309 7-282 (375)
13 2cya_A Tyrosyl-tRNA synthetase 100.0 3.9E-54 1.3E-58 417.6 17.2 236 59-309 10-269 (364)
14 2j5b_A Tyrosyl-tRNA synthetase 100.0 9.2E-54 3.1E-58 412.7 17.9 234 59-309 15-263 (348)
15 2yxn_A Tyrosyl-tRNA synthetase 100.0 1.2E-53 4E-58 408.1 13.5 231 59-302 8-262 (322)
16 3vgj_A Tyrosyl-tRNA synthetase 100.0 3.8E-52 1.3E-56 404.4 19.5 235 59-308 31-277 (373)
17 2jan_A Tyrosyl-tRNA synthetase 100.0 2.6E-52 8.9E-57 411.4 15.8 232 59-302 7-259 (432)
18 2cyb_A Tyrosyl-tRNA synthetase 100.0 8.5E-51 2.9E-55 388.5 21.0 233 59-309 7-244 (323)
19 2ts1_A Tyrosyl-tRNA synthetase 100.0 2.7E-51 9.2E-56 403.3 16.1 231 59-302 5-257 (419)
20 2pid_A Tyrosyl-tRNA synthetase 100.0 1.6E-51 5.4E-56 398.0 13.5 228 59-302 13-281 (356)
21 1h3f_A Tyrosyl-tRNA synthetase 100.0 5.8E-51 2E-55 402.5 17.1 227 58-302 11-256 (432)
22 1n3l_A Tyrosyl-tRNA synthetase 100.0 1.4E-50 4.7E-55 393.8 18.3 233 58-310 10-254 (372)
23 1jil_A Tyrrs, tyrosyl-tRNA syn 100.0 4.9E-50 1.7E-54 394.9 20.5 230 59-302 7-258 (420)
24 3tzl_A Tryptophanyl-tRNA synth 100.0 1.1E-50 3.8E-55 387.4 14.1 214 85-321 3-232 (322)
25 2zp1_A Tyrosyl-tRNA synthetase 100.0 2E-49 6.7E-54 377.7 19.4 225 60-309 5-234 (314)
26 2el7_A Tryptophanyl-tRNA synth 100.0 1.2E-49 4.1E-54 382.5 17.6 218 87-322 3-238 (337)
27 2g36_A Tryptophanyl-tRNA synth 100.0 3E-50 1E-54 387.0 12.8 219 85-322 12-248 (340)
28 2yy5_A Tryptophanyl-tRNA synth 100.0 3.5E-50 1.2E-54 387.6 13.3 219 84-321 3-248 (348)
29 1i6k_A TRPRS, tryptophanyl-tRN 100.0 5.9E-50 2E-54 383.3 13.3 216 86-321 2-238 (328)
30 3n9i_A Tryptophanyl-tRNA synth 100.0 9.5E-50 3.3E-54 383.5 14.2 218 85-321 15-255 (346)
31 1yi8_B Tryptophanyl-tRNA synth 100.0 3.9E-49 1.3E-53 380.7 17.8 219 83-321 20-257 (351)
32 3p0j_A Tyrosyl-tRNA synthetase 100.0 1.6E-48 5.4E-53 403.8 22.4 235 60-309 16-261 (690)
33 3sz3_A Tryptophanyl-tRNA synth 100.0 1E-49 3.5E-54 382.9 11.6 218 86-321 7-249 (341)
34 2dlc_X Tyrosyl-tRNA synthetase 100.0 1.7E-48 5.8E-53 381.6 18.6 236 59-310 13-259 (394)
35 1y42_X Tyrosyl-tRNA synthetase 100.0 3.7E-48 1.3E-52 378.5 18.1 231 59-302 38-320 (392)
36 3p0j_A Tyrosyl-tRNA synthetase 100.0 2.7E-41 9.1E-46 349.8 14.2 208 84-308 381-595 (690)
37 1nzj_A Hypothetical protein YA 98.5 2.7E-06 9.4E-11 79.9 14.4 186 93-300 13-251 (298)
38 2cfo_A Glutamyl-tRNA synthetas 98.4 3.1E-06 1.1E-10 84.7 15.6 186 93-302 9-276 (492)
39 1j09_A Glutamyl-tRNA synthetas 98.4 1.9E-06 6.4E-11 85.7 12.5 192 93-306 9-276 (468)
40 2ja2_A Glutamyl-tRNA synthetas 98.2 1.1E-05 3.6E-10 80.9 12.1 187 93-302 14-286 (498)
41 3afh_A Glutamyl-tRNA synthetas 98.0 8E-06 2.7E-10 81.6 8.4 193 86-302 26-284 (488)
42 3al0_C Glutamyl-tRNA(Gln) amid 97.9 9.4E-06 3.2E-10 82.9 6.8 196 86-305 130-391 (592)
43 3aii_A Glutamyl-tRNA synthetas 97.6 0.00026 9E-09 71.5 11.0 69 92-171 103-172 (553)
44 2o5r_A Glutamyl-tRNA synthetas 97.5 0.00029 9.9E-09 70.2 9.2 65 234-302 221-291 (481)
45 1irx_A Lysyl-tRNA synthetase; 97.2 0.0011 3.8E-08 66.5 9.6 65 236-302 235-308 (523)
46 4g6z_A Glutamate-tRNA ligase; 97.2 0.0038 1.3E-07 62.2 13.3 76 86-171 26-102 (490)
47 4gri_A Glutamate--tRNA ligase; 96.9 0.0052 1.8E-07 61.6 11.7 48 233-282 231-278 (512)
48 1qtq_A GLNRS, protein (glutami 94.8 0.19 6.5E-06 50.7 11.3 84 78-171 17-103 (553)
49 2hz7_A Glutaminyl-tRNA synthet 94.2 0.2 7E-06 52.9 10.4 84 78-171 57-143 (851)
50 3u1f_A Methionyl-tRNA syntheta 93.7 0.19 6.6E-06 50.0 8.9 79 81-160 6-96 (542)
51 3fnr_A Arginyl-tRNA synthetase 92.0 0.039 1.3E-06 54.6 1.0 62 234-296 239-303 (464)
52 2csx_A Methionyl-tRNA syntheta 89.8 0.16 5.5E-06 50.1 3.0 74 87-161 7-93 (497)
53 2csx_A Methionyl-tRNA syntheta 88.8 1.3 4.3E-05 43.6 8.7 54 234-291 253-308 (497)
54 3h99_A Methionyl-tRNA syntheta 88.7 1.1 3.8E-05 44.8 8.3 77 84-161 18-106 (560)
55 2d5b_A Methionyl-tRNA syntheta 88.6 0.23 8E-06 48.9 3.2 73 87-160 5-90 (500)
56 1rqg_A Methionyl-tRNA syntheta 87.9 1.5 5E-05 45.6 8.8 77 84-161 2-91 (722)
57 2d5b_A Methionyl-tRNA syntheta 87.5 1.5 5E-05 43.1 8.2 55 234-291 254-310 (500)
58 3kfl_A Methionyl-tRNA syntheta 86.5 0.23 7.7E-06 50.1 1.7 76 83-160 25-113 (564)
59 2zue_A Arginyl-tRNA synthetase 85.8 0.22 7.4E-06 51.1 1.2 59 233-295 379-443 (629)
60 3kfl_A Methionyl-tRNA syntheta 84.7 3.9 0.00013 41.0 9.8 54 234-291 297-352 (564)
61 1ile_A Ilers, isoleucyl-tRNA s 84.1 0.5 1.7E-05 49.7 3.0 54 235-291 548-604 (821)
62 4arc_A Leucine--tRNA ligase; l 83.7 2.4 8.2E-05 45.1 8.0 77 83-160 52-140 (880)
63 1iq0_A Arginyl-tRNA synthetase 83.6 0.19 6.5E-06 51.0 -0.4 56 236-295 352-411 (592)
64 2x1l_A Methionyl-tRNA syntheta 83.5 3.4 0.00012 40.8 8.6 76 84-160 12-99 (524)
65 3u1f_A Methionyl-tRNA syntheta 82.1 0.49 1.7E-05 47.0 1.9 49 236-290 283-335 (542)
66 2x1l_A Methionyl-tRNA syntheta 81.5 0.4 1.4E-05 47.6 1.0 53 235-291 269-323 (524)
67 4dlp_A Aminoacyl-tRNA syntheta 81.4 5.8 0.0002 39.3 9.5 76 84-160 25-112 (536)
68 1li5_A Cysrs, cysteinyl-tRNA s 81.0 4.1 0.00014 39.9 8.1 72 86-159 23-107 (461)
69 4dlp_A Aminoacyl-tRNA syntheta 80.1 0.57 1.9E-05 46.7 1.6 52 234-291 279-334 (536)
70 3h99_A Methionyl-tRNA syntheta 80.1 0.64 2.2E-05 46.6 2.0 52 236-291 305-358 (560)
71 3c8z_A Cysteinyl-tRNA syntheta 79.9 4.8 0.00016 38.7 8.0 72 87-160 42-126 (414)
72 3tqo_A Cysteinyl-tRNA syntheta 79.5 4.2 0.00015 40.0 7.6 75 85-161 25-112 (462)
73 3sp1_A Cysteinyl-tRNA syntheta 79.1 6.4 0.00022 39.1 8.7 74 86-161 43-139 (501)
74 3c8z_A Cysteinyl-tRNA syntheta 77.8 0.88 3E-05 44.0 2.1 52 235-290 248-303 (414)
75 1ffy_A Isoleucyl-tRNA syntheta 77.6 1.3 4.5E-05 47.2 3.5 53 234-291 551-608 (917)
76 1gax_A Valrs, valyl-tRNA synth 75.0 4.1 0.00014 43.2 6.4 47 82-129 32-82 (862)
77 1li5_A Cysrs, cysteinyl-tRNA s 74.7 1.2 4E-05 43.8 2.0 60 236-300 225-293 (461)
78 1gax_A Valrs, valyl-tRNA synth 74.2 1.6 5.3E-05 46.4 2.9 54 234-291 484-541 (862)
79 2v0c_A Aminoacyl-tRNA syntheta 73.1 5.8 0.0002 42.1 7.0 77 83-160 32-120 (878)
80 1f7u_A Arginyl-tRNA synthetase 68.7 1.7 5.6E-05 44.3 1.6 55 236-296 370-425 (607)
81 1wkb_A Leucyl-tRNA synthetase; 66.2 2.5 8.7E-05 44.2 2.4 52 236-291 608-663 (810)
82 1ffy_A Isoleucyl-tRNA syntheta 65.5 8.6 0.00029 41.0 6.3 47 83-130 47-98 (917)
83 1wz2_A Leucyl-tRNA synthetase; 64.8 3.3 0.00011 44.3 3.0 53 235-291 607-663 (967)
84 1ile_A Ilers, isoleucyl-tRNA s 64.2 3.6 0.00012 43.2 3.1 48 82-130 36-88 (821)
85 3tqo_A Cysteinyl-tRNA syntheta 60.6 2.4 8.1E-05 41.8 0.9 25 263-291 258-282 (462)
86 1iq0_A Arginyl-tRNA synthetase 52.8 10 0.00035 38.2 4.1 41 87-128 107-152 (592)
87 3foc_A Tryptophanyl-tRNA synth 52.2 3.6 0.00012 40.4 0.5 16 230-245 232-247 (451)
88 1f7u_A Arginyl-tRNA synthetase 50.9 14 0.00046 37.6 4.6 38 89-128 149-192 (607)
89 1rqg_A Methionyl-tRNA syntheta 49.9 2.8 9.7E-05 43.4 -0.6 35 264-302 334-373 (722)
90 3oqi_A YVMC, putative uncharac 48.2 1.5E+02 0.005 26.7 10.5 94 80-180 26-130 (257)
91 2zue_A Arginyl-tRNA synthetase 47.8 15 0.0005 37.5 4.3 42 85-128 120-168 (629)
92 3sp1_A Cysteinyl-tRNA syntheta 46.7 5.4 0.00018 39.7 0.8 26 261-290 286-311 (501)
93 1wkb_A Leucyl-tRNA synthetase; 42.9 33 0.0011 35.7 6.1 41 83-124 33-77 (810)
94 3fnr_A Arginyl-tRNA synthetase 39.7 27 0.00093 34.1 4.6 46 83-129 29-80 (464)
95 1qjc_A Phosphopantetheine aden 32.6 1.3E+02 0.0044 23.8 7.1 39 86-130 3-41 (158)
96 2ejc_A Pantoate--beta-alanine 29.6 68 0.0023 29.2 5.3 53 242-301 151-203 (280)
97 1wz2_A Leucyl-tRNA synthetase; 25.8 34 0.0012 36.5 2.9 39 84-123 34-76 (967)
98 2v0c_A Aminoacyl-tRNA syntheta 25.6 11 0.00039 39.9 -0.9 15 276-291 636-650 (878)
99 3nv7_A Phosphopantetheine aden 23.0 2.3E+02 0.008 23.0 7.1 45 86-140 4-50 (157)
100 3do8_A Phosphopantetheine aden 22.8 2.5E+02 0.0087 22.5 7.2 44 236-282 91-135 (148)
101 4arc_A Leucine--tRNA ligase; l 22.8 15 0.0005 39.1 -0.7 14 277-291 639-652 (880)
102 3oqv_A ALBC; rossman fold, cyc 22.4 3E+02 0.01 24.5 8.0 91 87-180 31-132 (247)
103 1o6b_A Phosphopantetheine aden 21.6 2.8E+02 0.0096 22.1 7.3 37 85-128 3-39 (169)
104 3f3m_A Phosphopantetheine aden 21.3 1.8E+02 0.006 24.1 6.0 47 84-140 3-51 (168)
105 3eb2_A Putative dihydrodipicol 20.3 4.6E+02 0.016 23.4 12.9 140 15-186 11-158 (300)
No 1
>3tze_A Tryptophanyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, amino acylation; HET: TRP; 2.60A {Encephalitozoon cuniculi}
Probab=100.00 E-value=7.4e-89 Score=667.04 Aligned_cols=309 Identities=45% Similarity=0.848 Sum_probs=275.3
Q ss_pred hhhcccccccCcccC------CCCccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCceeecCCHHHHHHHHHhC
Q 020745 10 EEEREQVVSPWEVSS------SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKG 83 (322)
Q Consensus 10 ~~~~~~~~~pw~v~~------~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~ 83 (322)
.+++++.||||+|++ .+.|||+|||++||+++||+++++||+++||+++|+|+|||+||+|||+++++++++++
T Consensus 20 ~~~~~~~v~pw~v~~~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~~~RG~i~~~~d~~~ll~~~~~~ 99 (406)
T 3tze_A 20 GSMAEQRITPWDVEVVSTDEVPVAIDYDKIINQFGCEKFNQALADRLEKLSGKPAHYFFRRGIVFAHRDFNLLLDEIANN 99 (406)
T ss_dssp --------------------CCSCCCHHHHHHTTTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESHHHHHHHHHTT
T ss_pred CccCCcccCccccccccccCccccccHHHHHHHhCCCcCCHHHHHHHHHHhCCCcHHHHhCCCeeccccHHHHHHHHhcC
Confidence 667889999999986 23699999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 020745 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (322)
Q Consensus 84 ~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~ 163 (322)
+++++|+||+|||++|||||++++++++|||+++|++++|+|||+||+++++++++++++++++++++|+|+|+||++++
T Consensus 100 ~p~~vy~G~~PTg~~lHLGh~v~~~~~~~lQ~~~g~~~~i~IaD~~a~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~k~~ 179 (406)
T 3tze_A 100 RPFYLYTGRGPSSKTMHIGHTIPFLLCKYMQDAFKIRLVIQITDDEKFLWKSMRLEDAMAYGRENIKDIVTLGFDPKLTY 179 (406)
T ss_dssp CCEEEEEEECCCSSCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEE
T ss_pred CCeEEEEeeCCCCCcccHHHHHHHHHHHHHHHhcCCcEEEEeeChHHHcCCCCCHHHHHHHHHHHHHHHHHcCCCccceE
Confidence 99999999999998999999999999999999989999999999999888779999999999999999999999999999
Q ss_pred EEecccccccccHHHHHHHHcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcccccccccChhh
Q 020745 164 IFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDP 243 (322)
Q Consensus 164 I~~ns~~~~~~~~~~~~~l~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~ 243 (322)
||+|++|.+ .+|..+++++|++|++++++++||++++|+|+|+||+|||||+|+++||+|+.+. .|+||||.||+|
T Consensus 180 i~~qs~~~~-~~~~~~~~L~r~~t~~~~~~~~g~~~~~s~g~f~YPlLQaaD~~~~~~p~il~~~---a~lvpvG~DQ~~ 255 (406)
T 3tze_A 180 IFSNVEASH-HFEENILKISKTINLNEAIKVFGFDMSSNIGQVGFPAKEIAPCFSSSFRFIGKGA---MCLVPAAVDQDP 255 (406)
T ss_dssp EEEHHHHGG-GGHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGSTTSCTTC---EEEEEEEGGGHH
T ss_pred EEeccHhHH-HHHHHHHHHHhhCCHHHHHHhhCCCCCCcchhhhhHHHhhhhhhccchHHhccCC---CeEEeeccchHH
Confidence 999999985 7899999999999999999999998999999999999999999999999998643 499999999999
Q ss_pred HHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhccCccCCCcccccc---CCCCC
Q 020745 244 YFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQVCIFWR---TRKCG 320 (322)
Q Consensus 244 ~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t~~~~~~~~~---~~~~~ 320 (322)
|+++|||+|+|+|+++|+++++++||+|+|+++|||||.|+|+|||+|+|++|++|||+||+||++.++..+ +++|+
T Consensus 256 ~i~l~Rdla~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~~~~I~L~D~p~~I~kKI~k~A~td~~~~~e~~~~~~g~p~ 335 (406)
T 3tze_A 256 FFRLARDKAKALGEKKPSSIYVSLLPDLKGVNRKMSASDPNSSIYLDDAQDTIRKKIIAYAYSGGRKTLEEHREKGGDID 335 (406)
T ss_dssp HHHHHHHHHHHHTCCCCEEEEECCCCCTTSCCCCSSCSCGGGSCBTTCCHHHHHHHHHHHCCCCCCCC-------CCCGG
T ss_pred HHHHHHHHHHHcCCCCceeeccCcccCCCCCCcCCCCCCCCCcccCCCCHHHHHHHHHhhccCCCcccccccccCCCCCc
Confidence 999999999999999999999999999998767999999889999999999999999998899998887763 45777
Q ss_pred CC
Q 020745 321 IT 322 (322)
Q Consensus 321 ~~ 322 (322)
++
T Consensus 336 v~ 337 (406)
T 3tze_A 336 VD 337 (406)
T ss_dssp GC
T ss_pred cc
Confidence 53
No 2
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II} SCOP: c.26.1.0
Probab=100.00 E-value=1.9e-88 Score=662.53 Aligned_cols=306 Identities=54% Similarity=0.982 Sum_probs=264.8
Q ss_pred ccccCcccC--CCCccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCceeecCCHHHHHHHHHhCCceEEEEeec
Q 020745 16 VVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG 93 (322)
Q Consensus 16 ~~~pw~v~~--~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~ 93 (322)
-||||+|++ ...|||+|||++||+++||+++++||+++||+++|+|+|||+|++|+|++++++++++|+++++|+||+
T Consensus 3 ~~~pw~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~g~~~~vy~G~~ 82 (393)
T 3hv0_A 3 GSMPWEVKADNAYGIDYNKLIDKFGCKLITKDMIERMERLTGQKAHHFFRRNIFLSHRDFEKILDVYEKGELFYLYTGRG 82 (393)
T ss_dssp -----------------CCHHHHTTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEEEEC
T ss_pred CCCcccccCCccccccHHHHHHHhCCCcCCHHHHHHHHHHhCCChHHHHhCCCccccCCHHHHHHHHhcCCCeEEEeCCC
Confidence 489999986 347999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEecccccc
Q 020745 94 PSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG 172 (322)
Q Consensus 94 PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~-~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~ 172 (322)
|||++|||||++++++++|||+++|++++|+|||+|++++|+ +++|++++++++++++|+|+|+||++++||+|++|.+
T Consensus 83 PTa~~lHlGh~v~~~~~~~lQ~~~~~~v~i~I~D~~~~~~r~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~ 162 (393)
T 3hv0_A 83 PSSESLHVGHLVPFLFTKYLQDTFKVPLVIQLTDDEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYIA 162 (393)
T ss_dssp CSSSSCBSTTHHHHHHHHHHHHHHCCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTCCCTTTEEEEEHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHHHhcCCCeEeeccChHHHhhccCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEECCHHHH
Confidence 998799999999999999999999999999999999999985 9999999999999999999999999999999999975
Q ss_pred cccHHHHHHHHcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcccccccccChhhHHHHHHHHH
Q 020745 173 GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVA 252 (322)
Q Consensus 173 ~~~~~~~~~l~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~~ltrdla 252 (322)
.+|.++++++|++|+++|++++||++++|+|+|+||+|||||+|+.+||+++..+.|++|+||||.||+||++++||+|
T Consensus 163 -~~~~~~~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaDil~~~~p~l~~~~~di~~lvp~G~DQ~~~i~l~Rdla 241 (393)
T 3hv0_A 163 -ELYPDILRIEKKISCSQIKSIFGFKDSCNVGKFAFPAVQAAPAFSSSFPHIFGGRTDIHCLVPHAIDQDPYFRMVRDVA 241 (393)
T ss_dssp -HHHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCSCCCEEEEEEGGGHHHHHHHHHHT
T ss_pred -HHHHHHHHHHccCCHHHHHHhhCCCCCCchhhHhHHHHHHHHHHhhhhHHHhcccCCCceecccccchHHHHHHHHHHH
Confidence 5699999999999999999999999999999999999999999999999998766778899999999999999999999
Q ss_pred HHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhccCccCCCcccccc---CCCCCCC
Q 020745 253 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQVCIFWR---TRKCGIT 322 (322)
Q Consensus 253 ~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t~~~~~~~~~---~~~~~~~ 322 (322)
+|+|+++|+++++++||+|+|+++|||||.++|+|||+|+|++|++|||++|+||++.++..+ |++|+++
T Consensus 242 ~r~~~~~p~~l~~~~l~gLdG~~~KMSKS~~nsaI~L~D~p~~i~kKI~k~A~td~~~~~~~~~~~~g~p~~~ 314 (393)
T 3hv0_A 242 PRLGYLKPSSIHSIFLPSLQGSQTKMSASVQNSSIFVNDNEESIRNKIMKYAFSGGQATEEEQRRLGANLDVD 314 (393)
T ss_dssp GGGTCCCCEEEEECCCCC-------------CCCCBTTCCHHHHHHHHHHHSCCCSCSSSCCC---CCCTTTC
T ss_pred HHcCCCCceeeccCcccCCCCCCcCCCCCCCCCeEeccCCHHHHHHHHHhhccCCCCccccccccCCCCcchh
Confidence 999999999999999999999768999999878999999999999999998899998888776 4577653
No 3
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, LIG nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei} SCOP: c.26.1.0
Probab=100.00 E-value=2.3e-87 Score=655.16 Aligned_cols=305 Identities=52% Similarity=0.973 Sum_probs=251.6
Q ss_pred ccccccCcccCCCCccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCceeecCCHHHHHHHHHhCCceEEEEeec
Q 020745 14 EQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRG 93 (322)
Q Consensus 14 ~~~~~pw~v~~~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~ 93 (322)
+.+||||+|++ .|||+|||++||+++||+++++||+++||+++|+|++||+|++|+|++.+++++++|+++++|+||+
T Consensus 9 ~~~~~~~~~~~--~~dy~~l~~~fg~~~~~~~~~~~~~~~~~~~~~~~~~RG~~~~~~d~~~~l~~~~~~~~~~vy~G~~ 86 (395)
T 3i05_A 9 EAVVTPWSVEG--DVNYDKLIKDFGSHAIDEALLERIERVLGKKPHHFLRRGIFFSHRDLNLLLDVYESGQPFYLYTGRG 86 (395)
T ss_dssp ---------------CHHHHHHHTTCEECCHHHHHHHHHHHTSCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEEC
T ss_pred cceeccccccC--cccHHHHHHHhCCCcCCHHHHHHHHHhhCcchHHHHhcCCccccccHHHHHHHHhcCCCeEEEEeec
Confidence 56899999998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccccc
Q 020745 94 PSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG 173 (322)
Q Consensus 94 PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~~ 173 (322)
|||++|||||++++++++|||+++|++++|+|||++++++++++++++++|+++++++|+|+|+||++++||+|++|.+
T Consensus 87 PTg~~lHLGh~v~~~~~~~lQ~~~~~~v~i~I~D~~~~l~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~ns~~~~- 165 (395)
T 3i05_A 87 PSSESMHMGHLIPFMFTKWLQDSFRVPLVIQMTDDEKFYFRNIPMEQVEAMTTENIKDIIAMGFDPELTFIFRDFDYMG- 165 (395)
T ss_dssp CCSSCCBGGGSHHHHHHHHHHHHHTCCEEEEECHHHHHHHSCCCHHHHHHHHHHHHHHHHTTTCCTTSEEEEEHHHHTT-
T ss_pred CCCccchHHHHHHHHHHHHHHHhcCCcEEEEEcchHHHhcCCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEEcCHHHH-
Confidence 9998999999999999999999999999999999999898889999999999999999999999999999999999986
Q ss_pred ccHHHHHHHHcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCC-CCcccccccccChhhHHHHHHHHH
Q 020745 174 AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK-DHLRCLIPCAIDQDPYFRMTRDVA 252 (322)
Q Consensus 174 ~~~~~~~~l~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~-~~~~~lvp~G~DQd~~~~ltrdla 252 (322)
.||.++++++|++|+++|++++||++++|+|+|+||+|||||+|+++||||+.++ .++.|+||||.||+||++++||+|
T Consensus 166 ~~~~~v~~l~r~~t~~~~~~~~~~~~~~s~g~f~YPlLQaaD~~~~~~~DIll~~~~~~~~lvp~G~DQ~~~i~l~Rdla 245 (395)
T 3i05_A 166 CMYRTVAKIERAFTASQVRGCFGFAMEDNCGRWMFPAIQAAPSFSAAFPHIFPPSMGNVFCLIPQAIDQDPYFRLTRDIA 245 (395)
T ss_dssp TSHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCTTTSCGGGCCCEEEEEEEGGGHHHHHHHHHTH
T ss_pred HHHHHHHHHHhhCCHHHHHHhhCCCCCCchHHHHHHHHHHHhhhcccchhhhcccccCCceEEEeccchHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999876 345699999999999999999999
Q ss_pred HHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhccCccCCCccccc--c-CCCCCCC
Q 020745 253 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQVCIFW--R-TRKCGIT 322 (322)
Q Consensus 253 ~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t~~~~~~~~--~-~~~~~~~ 322 (322)
+|+|+++|+++++++||+|+|+++||||| ++|+|||+|+|++|++|||++|+||++.++.. + +++|+++
T Consensus 246 ~r~~~~~p~~l~~~~l~gLdG~~~KMSKS-~~~~I~L~D~p~~i~kKI~k~A~td~~~~~e~~~~~~g~p~v~ 317 (395)
T 3i05_A 246 PRLGYLKPAVIHSKFFPGLSGPKGKMSSS-SGTAVLLTDTEKMVKDKINKHAFSGGGATKQEHFLLGANVEVD 317 (395)
T ss_dssp HHHTCCCCEEEEECCCCCC--------------CCBTTCCHHHHHHHHC----------------------CC
T ss_pred HHcCCCCceeeccccccCCCCCcccCCCC-CCCcccCCCCHHHHHHHHHhhccCCCccchhhcccCCCCcchh
Confidence 99999999999999999999976899999 69999999999999999999889998877654 2 4488764
No 4
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural GEN pathogenic protozoa, MSGPP, ligase; 3.00A {Entamoeba histolytica}
Probab=100.00 E-value=1.5e-83 Score=626.28 Aligned_cols=293 Identities=28% Similarity=0.580 Sum_probs=277.5
Q ss_pred cccccCcccCCCCccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCceeecCCHHHHHHHHHhCCceEEEEeecc
Q 020745 15 QVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGP 94 (322)
Q Consensus 15 ~~~~pw~v~~~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~P 94 (322)
.-++||.....+.|||+|||++||+++||+++++||+++||+++|+|+|||+||+|||++.+++++++|+++++|+||+|
T Consensus 12 ~~~~~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~l~RG~i~~~~d~~~ll~~~~~~~~~~vysG~~P 91 (386)
T 3hzr_A 12 TPSQLLQSFTTRTTDYNQLINSVGINAITPQQIQRIEKLSGKAPHHYLSRGVFLAEKSLDKFLDDVEAKKPTFIFIQKYP 91 (386)
T ss_dssp -CCCSSCCCCSSSCCSHHHHHHHTCEECCHHHHHHHHHHHTSCCCHHHHTTSEEEESSHHHHHHHHHTTCCEEEEEEECC
T ss_pred CCcchhhhcCcccccHHHHHHHhCCCcCCHHHHHHHHHHhCCCchHHHHCcCccccccHHHHHHHHhcCCCeEEEeccCC
Confidence 35899987767899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecccccccc
Q 020745 95 SSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA 174 (322)
Q Consensus 95 Sg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~~~ 174 (322)
||+ |||||++++++++|||+++|++++|+|||++++++|+++++++++|+++++++|+|+|+||++++||+||+|.+ .
T Consensus 92 TG~-lHLGh~v~~~~~~~lQ~~~g~~v~i~I~D~~a~~~r~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~~-~ 169 (386)
T 3hzr_A 92 QKE-VALEEYITLEFARYLQDAFNIQVIIQILDDIKVLNREATINEASKMSNDLMKYILAFGFNEDKTFIYTDYQYFG-K 169 (386)
T ss_dssp CSS-CBGGGHHHHHHHHHHHHHHCCEEEEEECHHHHHHTTSCCHHHHHHHHHHHHHHHHHTCCCGGGEEEEEHHHHHH-H
T ss_pred CCC-ccHHHHHHHHHHHHHHHhcCCeEEEEeCchHHhhcCCCCHHHHHHHHHHHHHHHHHcCCCCcceEEEeccHHHH-H
Confidence 995 99999999999999999889999999999999988879999999999999999999999999999999999986 7
Q ss_pred cHHHHHHHHcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcccccccccChhhHHHHHHHHHHH
Q 020745 175 FYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPR 254 (322)
Q Consensus 175 ~~~~~~~l~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~~ltrdla~k 254 (322)
+|..+.+++|++|++++++++|+++++|+|+|+||+|||||+|+.+||||+.+ +++|+||||.||+||+++|||+|+|
T Consensus 170 ~~~~~~~l~r~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaD~~~~~~pdil~~--~~a~~VpvG~DQ~~hl~l~Rdla~r 247 (386)
T 3hzr_A 170 MYRTISLVEKATAYNVVQPFFNFEYSDNIGKLASPSIMTASMFSQSYSHFFSS--PARCLVLDSIKNVQFHSIIDQIATT 247 (386)
T ss_dssp HHHHHHHHHHHCBHHHHTTTSCCCSSSBHHHHHHHHHHHHTTSGGGCTTTCSS--CCEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccHHHHHHHhCCCCCCchhhHhhHHHHHHHHhhhcchHhhCC--CCccccccccchHHHHHHHHHHHHH
Confidence 88899999999999999999999899999999999999999999999999865 3569999999999999999999999
Q ss_pred hCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhccCccCCCccc
Q 020745 255 IGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQVCI 312 (322)
Q Consensus 255 ~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t~~~~~~ 312 (322)
+|+++|+++++++||+|+|+ +|||||+++|+|||+|+|++|++|||++|||||+.|.
T Consensus 248 ~n~~~p~~l~~~~l~gLdG~-~KMSKSd~~~~I~L~D~p~~i~kKI~k~A~t~g~~Td 304 (386)
T 3hzr_A 248 LNFIQPTVLFHKMVPLLSGV-TKFDIPSDHNSILLSDNAKQVERKINKLAFSGGRNTT 304 (386)
T ss_dssp HTCCCCEEEEECCCCCTTCT-TCCCCCCTTTSCBTTCCHHHHHHHHHHTSCCCCCSSH
T ss_pred cCCCCceEeecCeeeCCCCC-CccCcCCCCCeeecCCCHHHHHHHHHHhccCCCCCCc
Confidence 99999999999999999995 4999998899999999999999999998888887763
No 5
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=100.00 E-value=5.3e-83 Score=623.50 Aligned_cols=295 Identities=43% Similarity=0.794 Sum_probs=263.3
Q ss_pred cccccccCcccCCCCccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCceeecCCHHHHHHHHHhCCceEEEEee
Q 020745 13 REQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGR 92 (322)
Q Consensus 13 ~~~~~~pw~v~~~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~ 92 (322)
+++.||||+|++ .|||+|||++||+++||+++++||+++||+++|+|++||+|++|+|++.+++++++|+++++|+|+
T Consensus 3 ~~~~v~pw~v~~--~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~~~Rg~i~~~~d~~~l~~~~~~~~p~~i~sG~ 80 (392)
T 3jxe_A 3 EEFKVTPWEVEG--VVDYDKLIKHFGTSPLTEDLLEKTAELTKSELPIFFRRKFFFSHRDYDLILKDYEEGRGFFLYTGR 80 (392)
T ss_dssp CCCEECSSCEES--CCCHHHHHHHTTCEECCHHHHHHHHHHTTSCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEEEE
T ss_pred CCCeeCCccccC--cccHHHHHHHhCCCcCCHHHHHHHHHHhCCCcHHHHhCcCcccccCHHHHHHHHhcCCCeEEEecc
Confidence 578999999998 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 020745 93 GPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (322)
Q Consensus 93 ~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~-~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (322)
+||| +|||||++++++++|||+.+|++++|+|||+||+++++ ++++++++++++++++|+|+|+||++++||.||+|.
T Consensus 81 ~PTG-~lHLGh~v~~~~~~~lQ~~~g~~~~i~IaD~ha~~~~~~~~~e~i~~~~~~~~~~~lA~GlDp~kt~i~~qS~~~ 159 (392)
T 3jxe_A 81 GPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAYDNILDIIAVGFDPDKTFIFQNSEFT 159 (392)
T ss_dssp CCSS-CCBHHHHHHHHHHHHHHHHHCCEEEEEECHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEETTTST
T ss_pred CCCC-chhHHHHHHHHHHHHHHHhcCCceEEEecchHHhhcCCCCCHHHHHHHHHHHHHHHHHhCcCccceEEEECchhH
Confidence 9998 99999999999899999966999999999999988876 899999999999999999999999999999999997
Q ss_pred ccccHHHHHHHHcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcccccccccChhhHHHHHHHH
Q 020745 172 GGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDV 251 (322)
Q Consensus 172 ~~~~~~~~~~l~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~~ltrdl 251 (322)
+ ++..++++++++|+++|+++++|++++|+|+|+||+|||||+ +.++ ..|+||||.||+||+++|||+
T Consensus 160 ~--~~~~~~~l~~~~t~~~~~~~~~~~~~~~~g~f~YP~LQaaDi--------l~~~--~a~~vpvG~DQ~~hl~l~Rdl 227 (392)
T 3jxe_A 160 K--IYEMAIPIAKKINFSMAKAVFGFTEQSKIGMIFFPAIQIAPT--------FFER--KRCLIPAAIDQDPYWRLQRDF 227 (392)
T ss_dssp H--HHHHHHHHHHHSBHHHHHHHHCCCTTSBHHHHHHHHHHHGGG--------GSSS--SCEEEEEEGGGHHHHHHHHHH
T ss_pred H--HHHHHHHHHhhCCHHHHhhhhccCCCCchHHHHHHHHHHhhH--------Hhhc--CCceeecccchHHHHHHHHHH
Confidence 5 888889999999999999999999999999999999999974 4442 349999999999999999999
Q ss_pred HHHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhccCccCCCcccccc---CCCCCCC
Q 020745 252 APRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQVCIFWR---TRKCGIT 322 (322)
Q Consensus 252 a~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t~~~~~~~~~---~~~~~~~ 322 (322)
|+|+|+++|..+++++||+|+|+++|||||.+||+|||+|+|++|++|||+||+||++.++.++ +++|+++
T Consensus 228 a~r~n~~~p~~l~~~~l~gLdG~~~KMSKS~~ns~I~L~D~p~~I~kKI~k~A~td~~~~~~~~~~~~~~P~~~ 301 (392)
T 3jxe_A 228 AESLGYYKTAALHSKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLTGGRPTLKEQREKGGEPEKC 301 (392)
T ss_dssp TGGGTSCCCEEEEECCCCCSSCSSSCCCTTSGGGCCBTTCCHHHHHHHHHTCC--------------------C
T ss_pred HHHcCCCCCeeeecccccCCCCCccccccCCCCCeeeCCCCHHHHHHHHHhhccCCCCcccccccccCCCCchh
Confidence 9999999999999999999999767999999877999999999999999998899998777654 3478763
No 6
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=100.00 E-value=9e-82 Score=622.27 Aligned_cols=312 Identities=52% Similarity=0.953 Sum_probs=261.0
Q ss_pred hhhcccccccCcccCC-------CCccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCceeecCCHHHHHHHHHh
Q 020745 10 EEEREQVVSPWEVSSS-------GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEK 82 (322)
Q Consensus 10 ~~~~~~~~~pw~v~~~-------~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~ 82 (322)
.++.++.||||+|++. ++|||+|||++|||+|||+++++||+++||+++|+|++||+|++|+|+++|++++++
T Consensus 20 ~~~~~~~v~pw~~~~~~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~ 99 (432)
T 2ip1_A 20 TDVKEQVVTPWDVEGGVDEQGRAQNIDYDKLIKQFGTKPVNEETLKRFKQVTGREPHHFLRKGLFFSERDFTKILDLYEQ 99 (432)
T ss_dssp --------------------------CHHHHHHHHTCEECCHHHHHHHHHHHSSCCCHHHHTTSEEEEESHHHHHHHHHH
T ss_pred cccccceeCCCcccCccccccccccCCHHHHHHHhCCCcCCHHHHHHHHHhhCCccHHHHhCCCcccCCCHHHHHHHHhc
Confidence 5566799999999872 239999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccC-CCHHHHHHHHHHHHHHHHHcCCCCCc
Q 020745 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTK 161 (322)
Q Consensus 83 ~~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~-~~~e~i~~~~~~~~~~iiA~G~dp~k 161 (322)
++++++|+||+|||++|||||++++++++|||+.+|++++|+|||+|+++.++ ++++++++++++++++|+|+|+||++
T Consensus 100 g~~~~vy~G~dPTag~LHLGh~v~~~~l~~lQ~~~g~~~i~lI~D~ta~l~~~~~t~e~i~~~~~~~~~~~lA~GlDp~k 179 (432)
T 2ip1_A 100 GKPFFLYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFARENAKDIIAVGFDPKN 179 (432)
T ss_dssp TCCCEEEEEECCCSSCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGG
T ss_pred CCCeEEEEeecCCCCCccHHHHHHHHHHHHHHHHcCCeEEEEEecccceeCCCCCCHHHHHHHHHHHHHHHHHhCCCCCc
Confidence 99999999999997799999999999999999955999999999999988876 89999999999999999999999999
Q ss_pred eEEEecccccccccHHHHHHHHcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcccccccccCh
Q 020745 162 TFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQ 241 (322)
Q Consensus 162 t~I~~ns~~~~~~~~~~~~~l~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQ 241 (322)
++||+||+|++..++..+++|+++++++++++++++++++|+|+|+||+|||||+++.+++..+..+....|+||||.||
T Consensus 180 ~~i~~nSd~~~~~~~~~~~~v~rm~~~~~~k~r~~~~~~~s~g~f~YPlLQAaDil~l~~d~~~~~~~~~~~lvp~G~DQ 259 (432)
T 2ip1_A 180 TFIFSDLQYMGGAFYETVVRVSRQITGSTAKAVFGFNDSDCIGKFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQ 259 (432)
T ss_dssp EEEEEHHHHCSHHHHHHHHHHHTSCCHHHHHHTTCCCTTSCHHHHHTHHHHHHTTSGGGCTTTTCCCTTCCEEEEEEGGG
T ss_pred eEEEeCchhhhhhHHHHHHHHHhhhcHHHHHHHhCCCCCCchhhhhHHHHHHHHHHHhccchhhcccCCCceEEEeccCc
Confidence 99999999976567888889999999999999998888999999999999999999877777664222345999999999
Q ss_pred hhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhccCccCCCcccccc---CCC
Q 020745 242 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQVCIFWR---TRK 318 (322)
Q Consensus 242 d~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t~~~~~~~~~---~~~ 318 (322)
+||++++||+|+|+|+++|.++++++||+|+|+++|||||.+|++|||+|+|++|++||++||+|+++.+...+ +++
T Consensus 260 ~~~i~l~Rdla~r~~~~~p~~l~~~ll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~~KI~~yA~t~~~~~~~~~~~~g~~ 339 (432)
T 2ip1_A 260 DPYFRVCRDVADKLKYSKPALLHSRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKINKYAFSGGQVSADLHRELGGN 339 (432)
T ss_dssp HHHHHHHHHHHHHHTSCCCEEEEECCCCCTTC--------CGGGCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHhCCCCceeeccccccCCCCCccccCCCCCCCeEeccCCHHHHHHHhhhhcccCCccchhhccccCCC
Confidence 99999999999999999999999999999999768999999766999999999999999999999987654322 235
Q ss_pred CCC
Q 020745 319 CGI 321 (322)
Q Consensus 319 ~~~ 321 (322)
|++
T Consensus 340 pd~ 342 (432)
T 2ip1_A 340 PDV 342 (432)
T ss_dssp TTT
T ss_pred chH
Confidence 654
No 7
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=100.00 E-value=8.5e-82 Score=629.20 Aligned_cols=312 Identities=61% Similarity=1.096 Sum_probs=281.6
Q ss_pred hhhcccccccCcccC--CCCccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCceeecCCHHHHHHHHHhCCceE
Q 020745 10 EEEREQVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFY 87 (322)
Q Consensus 10 ~~~~~~~~~pw~v~~--~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~ 87 (322)
.+.+++.||||+|++ .++|||+|||++|||++||+++++||+++||+++|+|++||+|++|+|++.++++++++++++
T Consensus 78 ~~~~~~~v~pw~~~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~~~~~~ 157 (477)
T 1r6t_A 78 TEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFY 157 (477)
T ss_dssp ----CCEESSSCEECSCTTCCCHHHHHHHHTCEECCHHHHHHHHHHHCSCCCHHHHTTSEEEEESHHHHHHHHHTTCCEE
T ss_pred cccccceeCCccccCCcccccCHHHHHHHhCCCCCCHHHHHHHHHHhCcccHHHHhCCCccccCCHHHHHHHHhcCCCcE
Confidence 345679999999987 235999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEec
Q 020745 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 167 (322)
Q Consensus 88 vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~n 167 (322)
+|+||+|||++|||||++++++++|||+.+|++++|+|||+|+++.+.++++++++|+++++++|+|+|+||++++||+|
T Consensus 158 vy~G~dPTag~LHLGh~v~~~~~~~lQ~~~g~~~iilI~D~~a~igd~lt~e~i~~n~~~~~~~~lA~GlDp~k~~i~~n 237 (477)
T 1r6t_A 158 LYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSD 237 (477)
T ss_dssp EEEEECCCTTCCBGGGHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTCCCTTSEEEEEH
T ss_pred EEEcccCCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEec
Confidence 99999999779999999999889999995599999999999998875699999999999999999999999999999999
Q ss_pred ccccc--cccHHHHHHHHcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcccccccccChhhHH
Q 020745 168 FDYVG--GAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYF 245 (322)
Q Consensus 168 s~~~~--~~~~~~~~~l~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~ 245 (322)
++|.+ ..+++++++|++++|++++++++++++++|+|+|+||+|||||+|+.+++..++.+.+..|+||||.||+||+
T Consensus 238 sd~~~~l~~~~~~~~~l~r~~t~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~~~~VpvG~DQ~~~i 317 (477)
T 1r6t_A 238 LDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYF 317 (477)
T ss_dssp HHHGGGCTTHHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHH
T ss_pred hhhhcccHHHHHHHHHHHhhccHHHHHHHhCCCCCCChhhhhhHHHHHHHHHHhccchhhccccCCceeEeccccHHHHH
Confidence 99985 3799999999999999999999998889999999999999999987777666644445669999999999999
Q ss_pred HHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhccCccCCCcccccc---CCCCCC
Q 020745 246 RMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQVCIFWR---TRKCGI 321 (322)
Q Consensus 246 ~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t~~~~~~~~~---~~~~~~ 321 (322)
+++||+|+|+|+++|..+++++||+|+|+++|||||.+|++|||+|+|++|++||++||+|+++.++..+ +++|++
T Consensus 318 ~l~Rdla~r~~~~~p~~l~~pll~gLdG~~~KMSKS~~nsaI~L~d~p~~i~kKi~~yA~t~~~~~~~~~~~~g~~pd~ 396 (477)
T 1r6t_A 318 RMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEEHRQFGGNCDV 396 (477)
T ss_dssp HHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSTTCCCBTTCCHHHHHHHHHHHSCCCSCSSHHHHHHHCCCTTT
T ss_pred HHHHHHHHHhCCCCceeeecccccCCCCCccccCCCCCCCceeecCCHHHHHHHhccccccCCccchhhccccCCCchH
Confidence 9999999999999999999999999998657999999777999999999999999999999997654332 236654
No 8
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, AN recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=100.00 E-value=5e-82 Score=623.80 Aligned_cols=305 Identities=62% Similarity=1.102 Sum_probs=278.0
Q ss_pred hhhcccccccCcccC--CCCccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCceeecCCHHHHHHHHHhCCceE
Q 020745 10 EEEREQVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFY 87 (322)
Q Consensus 10 ~~~~~~~~~pw~v~~--~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~ 87 (322)
++..++.||||+|++ .++|||+|||++|||++||+++++||+++||+++|+|++||+|++|+|+++++++++++++++
T Consensus 31 ~~~~~~~v~pw~v~~~~~~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~~~l~~RG~i~~~~d~~~l~~~l~~~~~~~ 110 (437)
T 1r6u_A 31 TEAEEDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPFY 110 (437)
T ss_dssp ----CCEEETTEEECSCTTCSCTTTHHHHTTCEECCHHHHHHHHHHHTSCCCHHHHHTSEEEEESHHHHHHHHTTTCCEE
T ss_pred cccccceeCCCcccCCcccccCHHHHHHHhCCCCCCHHHHHHHHHHhCCCcHHHHhCCCccCCCCHHHHHHHHhcCCCcE
Confidence 445689999999987 234999999999999999999999999999999999999999999999999999999989999
Q ss_pred EEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEec
Q 020745 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 167 (322)
Q Consensus 88 vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~n 167 (322)
+|+||+|||++|||||++++++++|||+.+|++++|+|||+|+++.+.++++++++|+++++++|+|+|+||++++||+|
T Consensus 111 vy~G~dPTag~LHLGh~v~~~~~~~lQ~~~G~~~iilIgD~ta~igd~lt~e~i~~n~~~~~~~~lA~GlDp~kt~i~~n 190 (437)
T 1r6u_A 111 LYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSD 190 (437)
T ss_dssp EEEEECCCSSCCBHHHHHHHHHHHHHHHHHTCCEEEEECHHHHHHHSSCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEH
T ss_pred EEEcccCCCCCccHHHHHHHHHHHHHHHHhCCcEEEEEecceeeecCCCCHHHHHHHHHHHHHHHHHhCCCccceEEEec
Confidence 99999999779999999999989999995599999999999998876699999999999999999999999999999999
Q ss_pred cccccc--ccHHHHHHHHcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcccccccccChhhHH
Q 020745 168 FDYVGG--AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYF 245 (322)
Q Consensus 168 s~~~~~--~~~~~~~~l~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~ 245 (322)
|+|.+. .+++++++|+++++++++++++++++++|+|+|+||+|||||+|+.+++..++.+....|+||||.||+||+
T Consensus 191 Sd~~~~l~~~~~l~~~v~rm~~~~~~k~r~~~~~~~s~gef~YPlLQAaDil~l~~d~~~g~~~~~~~lVpvG~DQ~~~i 270 (437)
T 1r6u_A 191 LDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYF 270 (437)
T ss_dssp HHHGGGCTTHHHHHHHHHHTCBHHHHHHHHCCCTTSBHHHHHHHHHHHGGGSGGGCHHHHTTCCCCEEEEEEEGGGHHHH
T ss_pred hhhhhhHHHHHHHHHHHHhhccHHHHHHHhCCCCCCchHhHHHHHHHHHHHHHhhcchhcccccCCceEEEeehhhHHHH
Confidence 999753 689999999999999999999998889999999999999999887666665554445669999999999999
Q ss_pred HHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhccCccCCCccccc
Q 020745 246 RMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQVCIFW 314 (322)
Q Consensus 246 ~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t~~~~~~~~ 314 (322)
+++||+|+|+|+++|..+++++||+|+|+++|||||.+|++|||+|+|++|++||++||+|+++.++..
T Consensus 271 ~l~Rdla~r~~~~~P~~l~~pll~gLdG~~~KMSKS~~nsaI~L~D~p~~I~kKI~~ya~td~~~~~~~ 339 (437)
T 1r6u_A 271 RMTRDVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFSGGRDTIEE 339 (437)
T ss_dssp HHHHHHGGGGTCCCCEEEEECCCEETTEEEEECCTTSSSSCCBTTCCHHHHHHHHHHTSCCCBCSSHHH
T ss_pred HHHHHHHHHhCCCCceEeecccccCCCCCccccCCCCCCCeeeccCCHHHHHHHhhccccCCCccchhh
Confidence 999999999999999999999999999865799999977799999999999999999999999765443
No 9
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=100.00 E-value=5.8e-81 Score=616.46 Aligned_cols=297 Identities=46% Similarity=0.796 Sum_probs=273.7
Q ss_pred CCccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCceeecCCHHHHHHHHHhCCceEEEEeeccCCCCcchhhhH
Q 020745 26 GKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLV 105 (322)
Q Consensus 26 ~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PSg~slHlGhli 105 (322)
.+|||+|||++||+++||+++++||+++||+++|+|+|||+|++|+|+++|++++++|+++++|+||+|||++|||||++
T Consensus 32 ~~~dy~kl~~~fg~~~~~~~~~~~~~~~~~~~~h~~l~RG~i~~~~dl~~ll~~l~~g~p~~vytG~dPTagsLHLGH~v 111 (451)
T 3foc_A 32 AAVAYEDIITRFGAAPITDDLLKRFETVTGTKAHPMLRRGLFYAHRDFEEFLSYYEKGHPIYIYTGRGPSSGALHLGHLL 111 (451)
T ss_dssp HHHHHHHHHHTTTCBCCCHHHHHHHHHHHTCCCCHHHHTTSEEEEESHHHHHHHHHTTCCEEEEEEECCCSSCCBHHHHH
T ss_pred ccCcHHHHHHHhCCCcCCHHHHHHHHHHhCCChHHHHhCCCccccccHHHHHHHHhcCCCeEEEecCCCCCCCccHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999997799999999
Q ss_pred HHHHHHHHHHhCCceEEEEeeCcccccccC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEecccccc-cccHHHHHHHH
Q 020745 106 PFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG-GAFYKNMVKVA 183 (322)
Q Consensus 106 ~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~-~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~-~~~~~~~~~l~ 183 (322)
++++++|||+++|++++|+|||+|++++|+ +++|++++|+++++++|+|+||||++++||+|++|++ ..+|..+.+++
T Consensus 112 ~~~~l~~lQ~~~g~~v~I~IgD~~a~~~r~~lt~E~I~~n~~~~~~~~lA~GlDpekt~i~~nSd~~~~~~~~~~l~~L~ 191 (451)
T 3foc_A 112 PFIFTKYLQDAFKCYVVIQITDDEKFLRNRSLSYAEVDSYTRENIKDIIACGFDPDKTFIFINSQYLSLKNRYRFSCLVD 191 (451)
T ss_dssp HHHHHHHHHHHHTCEEEEEECHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCGGGEEEEEHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHccCceEEEEeeCcHHhhcccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeCchhhcchhHHHHHHHHH
Confidence 999999999999999999999999998885 9999999999999999999999999999999999986 56778888999
Q ss_pred cccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCc------------------------------------------
Q 020745 184 KCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSF------------------------------------------ 221 (322)
Q Consensus 184 k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f------------------------------------------ 221 (322)
+++|+++|+++++|++++|+|+|+||+|||||+|+.+|
T Consensus 192 r~~Tv~~m~~~~~f~~~is~gef~YPlLQAaDil~~~~d~~~~~~vp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~a 271 (451)
T 3foc_A 192 RMLPISQLRASFGFSNDANVGYAAFPPKQMLPVYSTYFDGLPFTRVPLPVGTGNEDAADAVSTKKASKKTPKKDAVLSPV 271 (451)
T ss_dssp HTCCHHHHHHHHCCCSSSCHHHHTCHHHHHGGGSGGGGTTSGGGCCBCC-------------------------CCCCHH
T ss_pred hhCCHHHHHhhcccCCCCchHHHhhHHHHHHHHHHhhcCCCCccccccccccccchhhhhhhhhhccccccchhhhhhhc
Confidence 99999999999999999999999999999999998777
Q ss_pred ---cccccCCC---CcccccccccChhhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCCCHHH
Q 020745 222 ---PHLFSGKD---HLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKA 295 (322)
Q Consensus 222 ---~~i~~~~~---~~~~lvp~G~DQd~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~ 295 (322)
|++|.... +++|+||||.||+||+++|||+|+|+|+++|.++++++||||+|+++|||||.+||+|+|+|+|++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~VPvG~DQ~~hlel~Rdia~rfn~~~p~~~~~~~l~gLdG~~~KMSKS~~ns~I~l~D~p~~ 351 (451)
T 3foc_A 272 HVVEELFPDSKRYQKAMCLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKFLPGLQGSGTKMSASDPNSAIYLTDTPAQ 351 (451)
T ss_dssp HHHHHHCGGGGGBCCCEEEEEECTTTHHHHHHHHHHTTTTTSCCCEEEEECCCCBTTBTTCCCCTTCGGGSCBTTCCHHH
T ss_pred ccchhhcccccccccccceeeeecchHHHHHHHHHHHHHhCCCCCeeecCCcccCCCCCCCccCCCCCCCeeeecCCHHH
Confidence 34332111 378999999999999999999999999999999999999999997679999998789999999999
Q ss_pred HHHHHhccCccCCCccccc--c-CCCCCCC
Q 020745 296 IKNKIILLKCADKQVCIFW--R-TRKCGIT 322 (322)
Q Consensus 296 i~~KI~k~a~t~~~~~~~~--~-~~~~~~~ 322 (322)
|++|||++|+||++.++.. + +++|+++
T Consensus 352 I~kKI~k~A~Td~~~~~~~~~~~~g~p~~~ 381 (451)
T 3foc_A 352 IKNKINRYAFSGGRDTEEEHRAFGADLSVD 381 (451)
T ss_dssp HHHHHHHHSCCCSCSSHHHHHTTCCCTTTC
T ss_pred HHHHHhhhccCCCCccchhcccCCCCcchh
Confidence 9999999778998877654 2 4577764
No 10
>3a04_A Tryptophanyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding, protein biosynthesis; 1.97A {Aeropyrum pernix} PDB: 3a05_A*
Probab=100.00 E-value=4.9e-79 Score=593.33 Aligned_cols=288 Identities=27% Similarity=0.438 Sum_probs=258.8
Q ss_pred hcccccccCcccCCCCccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhcCceeecCCHHHHHHHHHhCCceEEEEe
Q 020745 12 EREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTG 91 (322)
Q Consensus 12 ~~~~~~~pw~v~~~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG 91 (322)
+.+++||||+|++ .+||+|||++||+++||+. + |++++||++||+|+|||+||+|||++.||+++++|+|++||||
T Consensus 1 m~~~~v~pw~~~~--~~dy~kl~~~fg~~~i~~~-l-~~~~~~~~~~h~~lrRgi~f~hRd~d~il~~~e~gk~~~v~sG 76 (372)
T 3a04_A 1 MAAERLDPWGAVE--IKDYDRLLRTFGIRPFSEV-L-PLLRKAGMEPSFLMRRGIIFGHRDFDKILEAKARGERVAVLTG 76 (372)
T ss_dssp -----CCSSCSTT--TTTTHHHHHTTTCEEGGGG-H-HHHHHTTCCCCHHHHTTSEEEEESHHHHHHHHHTTCCCEEEEE
T ss_pred CCCCeeCCCCCCC--CcCHHHHHHHhCCCCcchH-H-HHHHhccCCcchhhccceeeeccCHHHHHHHHHcCCCCEEEeC
Confidence 3567899999997 9999999999999999975 4 7888999999999999999999999999999999999999999
Q ss_pred eccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccC-CCHHHHHHHHHHHHHHHHHcCCCCCceEEEecccc
Q 020745 92 RGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY 170 (322)
Q Consensus 92 ~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~-~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~ 170 (322)
++||| +|||||++++++.+|+|+. |+.++|+|||+||++++. .+.+.++.++++++++|+|||+||+|++||.||++
T Consensus 77 ~~PTG-~lHLGhyv~~~~~~~lq~~-~~~~~~~IaD~ha~t~~~~~~~e~~r~~~~~~~~~~lA~GlDP~kt~if~qS~~ 154 (372)
T 3a04_A 77 FMPSG-KFHFGHKLTVDQLIYLQKN-GFKVFVAIADAEAFAVRRIGREEAVRIAVEEYIANMIALGLDPKDTEFYFQTNR 154 (372)
T ss_dssp ECCCS-CCBHHHHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTCCCHHHHHHHHHHTTHHHHHHHTCCTTTCEEEEGGGS
T ss_pred cCCCc-HhHHHHHHHHHHHHHHHhC-CCeEEEEEecchhhccCCCCCHHHHHHHHHHHHHHHHHcCCChHHcchhhhccc
Confidence 99999 7999999999999999986 889999999999988776 45567899999999999999999999999999987
Q ss_pred cccccHHHHHHHHcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcccccccccChhhHHHHHHH
Q 020745 171 VGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRD 250 (322)
Q Consensus 171 ~~~~~~~~~~~l~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~~ltrd 250 (322)
. ..++..+..+++.+|++++.+.++ ..+.|.+.||++||||++..+++..+++++ |+||||.||+||++||||
T Consensus 155 ~-~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~yP~lqAaDil~~~~d~~~gy~a---~~VPVG~DQ~~hleltRd 227 (372)
T 3a04_A 155 G-TPYFRLIQLFSGKVTAAEMEAIYG---ELTPAKMMASLTQAADILHVQLDEYGGYRH---VVVPVGADQDPHLRLTRD 227 (372)
T ss_dssp C-HHHHHHHHHHTTSSCHHHHHHHHS---SCCHHHHHHHHHHHHHHHGGGSGGGTCCCC---EEEEEEGGGHHHHHHHHH
T ss_pred h-HHHHHHHHHHHhhhhHHHHhhhhh---ccCcccccCCcchhHHHhhhcCccccCccc---eecccchhhHHHHHHHHH
Confidence 4 467788888999999999999886 578899999999999988777766555554 999999999999999999
Q ss_pred HHHHhC----CCCceeeecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhccCccCCCcccccc
Q 020745 251 VAPRIG----YHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQVCIFWR 315 (322)
Q Consensus 251 la~k~~----~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t~~~~~~~~~ 315 (322)
+|+|+| .++|+.++++++|||+| .|||||.++|+|+|+|+|++|++|||+ |+||++.++...
T Consensus 228 iA~rfn~~~~~~~P~~~~~~~~pgldG--~KmS~S~~ns~I~l~D~p~~i~kKI~k-a~td~~~~~~~~ 293 (372)
T 3a04_A 228 LADRMAGVVELERPASTYHKLQPGLDG--RKMSSSRPDSTIFLTDPPEVARNKLFR-ALTGGRATAEEQ 293 (372)
T ss_dssp HHHHTTTTSCCCCCEEEEECCCBCTTS--SBCCTTSGGGSCBTTCCHHHHHHHHHT-CCCSCCSSHHHH
T ss_pred HHHHhcCcccccChhhhhhcccCCCCC--CccCCCCCCcccccCCCHHHHHHHHhc-CccCCCCCcccc
Confidence 999998 47899999999999997 799999999999999999999999999 899998776543
No 11
>3prh_A Tryptophanyl-tRNA synthetase; TRPRS, protein biosynthesis, translation, class I tRNA synth rossman fold, high motif, KMSKS motif; 2.80A {Bacillus subtilis}
Probab=100.00 E-value=7.2e-55 Score=424.20 Aligned_cols=238 Identities=21% Similarity=0.256 Sum_probs=182.5
Q ss_pred ceeecCCHHHHHHHHHhC-CceE----EEEeeccCCCCcchhhhHHHHH-HHHHHHhCCceEEEEeeCcccccccCCCHH
Q 020745 66 VFFAHRDLNDILDAYEKG-EKFY----LYTGRGPSSEALHLGHLVPFMF-TKYLQDAFKVPLVIQLTDDEKCMWKNLSVE 139 (322)
Q Consensus 66 i~~~~~d~~~ll~~~~~~-~~~~----vytG~~PSg~slHlGhli~~~~-~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e 139 (322)
|-.+|||++.|++++++| +|++ +|+|++||| .|||||+++++. .++||+ |+.++++|||+|+++. ..+++
T Consensus 11 ~~~~hrdld~il~~~e~g~~p~~m~~ri~sG~~PTG-~lHLGhyvGal~~~~~LQ~--~~~~~~~IaD~hAlt~-~~~~~ 86 (388)
T 3prh_A 11 IPNPLLGLDSTENLYFQGIDPFTMKQTIFSGIQPSG-SVTLGNYIGAMKQFVELQH--DYNSYFCIVDQHAITV-PQDRL 86 (388)
T ss_dssp ------------------------CCEEEEEECCCS-CCBHHHHHHTHHHHHHTTT--TSEEEEEECHHHHTTS-CCCHH
T ss_pred CCCccCCHHHHHHHHHcCCCCcccCCeEEEeeCCCC-cchHHHHHHHHHHHHHHHc--cCcEEEEEecceeeec-CCCHH
Confidence 457999999999999999 8998 999999999 699999999874 567997 6788999999999776 58999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEecccccccccHHHHHHHHcccCHHHHHHhhCCC------CCccccccchhhhhc
Q 020745 140 ESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT------GEDHIGKVSFPPVQA 213 (322)
Q Consensus 140 ~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~~~~~~~~~~l~k~~t~~~~~~~~g~~------~~~s~~~~~YP~lQa 213 (322)
++++++++++++|+|+|+||+|++||.||+|.+ .....+.++..++++++.+...|+ +++++|+|+||+|||
T Consensus 87 ~lr~~~~~~aa~~lA~GlDp~kt~if~qS~v~~--~~el~w~l~~~~~~~~L~R~~~fk~k~~~~~~~~~g~~~YPvLQA 164 (388)
T 3prh_A 87 ELRKNIRNLAALYLAVGLDPEKATLFIQSEVPA--HAQAGWMMQCVAYIGELERMTQFKDKSKGNEAVVSGLLTYPPLMA 164 (388)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTEEEEEGGGSTH--HHHHHHHHHTTSCHHHHHTTC----------CCBHHHHSCHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCChhHeEEEecccccc--hHHHHHHHHhhccHHHHHhhhhHhHHhhccCCCcchhHhhHHHHH
Confidence 999999999999999999999999999999974 334455577788888877765544 579999999999999
Q ss_pred CCCCCCCccccccCCCCcccccccccChhhHHHHHHHHHHHhCCC------Cceeee---cccccCCCCCCCcCCCCCC-
Q 020745 214 VPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH------KPALIE---SSFFPALQGETGKMSASDP- 283 (322)
Q Consensus 214 ad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~~ltrdla~k~~~~------kp~~l~---~~~lp~L~G~~~KMSkS~p- 283 (322)
|| |+.+++ |+||||.||+||+++|||+|+|+|.. .|..+. +.++|||+|+++|||||.|
T Consensus 165 AD--------Il~~~a---d~vPvG~DQ~~hleltRdia~rfn~~y~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~ 233 (388)
T 3prh_A 165 AD--------ILLYGT---DLVPPGEDQKQHLELTRNLAERFNKKYNDIFTIPEVKIPKVGARIMSLNDPLKKMSKSDPN 233 (388)
T ss_dssp HH--------HHTTTC---CEECCCSSCHHHHHHHHHHHHHHHHHTCSCCCCCEECCCSCCCCCBCSSCTTSBCCTTCSS
T ss_pred HH--------HHHhCC---CEEEechhHHHHHHHHHHHHHHhCcccCCCcccchhhhcccccccccCCCCCCccCCCCCC
Confidence 96 566666 88999999999999999999999852 233333 4688999876789999997
Q ss_pred -CCeeecCCCHHHHHHHHhccCccCCCccccccCC-CCCC
Q 020745 284 -NSAIYVTDSAKAIKNKIILLKCADKQVCIFWRTR-KCGI 321 (322)
Q Consensus 284 -~~aI~L~D~p~~i~~KI~k~a~t~~~~~~~~~~~-~~~~ 321 (322)
+|+|||+|+|++|++|||+ |+||+...+.++++ +|++
T Consensus 234 ~~n~I~L~D~p~~I~kKI~k-a~TD~~~~~~~~~~~~p~v 272 (388)
T 3prh_A 234 QKAYITLLDEPKQLEKKIKS-AVTDSEGIVKFDKENKPGV 272 (388)
T ss_dssp TTSCCBTTCCHHHHHHHHHT-CCCCSSCCCCCCTTTCHHH
T ss_pred CCCeeecCCCHHHHHHHHhh-ccCCCCCcccCCCCCCCCc
Confidence 7999999999999999999 89998888888855 8765
No 12
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics; HET: TYR; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.3e-54 Score=422.31 Aligned_cols=237 Identities=21% Similarity=0.270 Sum_probs=212.2
Q ss_pred hhhhhcCceeecCCHHHHHHHHHhCCceEEEEeeccCCCCcchhh-hHHHHHHHHHHHhCCceEEEEeeCcccccccC--
Q 020745 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGH-LVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-- 135 (322)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PSg~slHlGh-li~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~-- 135 (322)
-.|++||++..+.+.++|++++++|+++++|+||+||| +||||| +++++.++|||++ |++++++|||+|+++.++
T Consensus 7 ~~l~~r~~~~e~~~~~~l~~~l~~~~~~~vy~G~~PTg-~lHlG~yl~~l~~~~~lQ~~-G~~~~~~iaD~ha~~~~~~g 84 (375)
T 2cyc_A 7 INLVLKKPTEEVLTVENLRHLFEIGAPLQHYIGFEISG-YIHLGTGLMAGAKIADFQKA-GIKTRVFLADWHSWINDKLG 84 (375)
T ss_dssp HHHHHSTTEEEEETHHHHHHHHHHTCCCBEEEEECCCS-CCBHHHHHHHHHHHHHHHHT-TCBCEEEECHHHHHHTTGGG
T ss_pred HHHHhcCCceeecCHHHHHHHHhcCCCcEEEeCCCCCC-CcCchHHHHHHHHHHHHHHC-CCcEEEEecCcEEEcCCCCC
Confidence 46789999888889999999999988999999999999 999999 7788899999997 889999999999988764
Q ss_pred CCHHHHHHHH-HHHH----HHHHHcCCCCCceEEEecccccccc-cHHHHHHHHcccCHHHHHHhh---CCC--CCcccc
Q 020745 136 LSVEESQRLA-RENA----KDIIACGFDVTKTFIFSDFDYVGGA-FYKNMVKVAKCVTYNKVVGIF---GFT--GEDHIG 204 (322)
Q Consensus 136 ~~~e~i~~~~-~~~~----~~iiA~G~dp~kt~I~~ns~~~~~~-~~~~~~~l~k~~t~~~~~~~~---g~~--~~~s~~ 204 (322)
.+++++++++ .+++ ++|+|+|+||+++.||.||+|..+. +|..+.++++++|+++|+++. ++. +++|+|
T Consensus 85 ~~~e~i~~~~~~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~k~r~~~~~i~~g 164 (375)
T 2cyc_A 85 GDLEVIQEVALKYFKVGMEKSIEVMGGDPKKVEFVLASEILEKGDYWQTVIDISKNVTLSRVMRSITIMGRQMGEAIDFA 164 (375)
T ss_dssp GCHHHHHHHHHHTHHHHHHHHHHHTTCCGGGSEEEETHHHHTBHHHHHHHHHHHTTSBHHHHHHTGGGGTCCCCTTCBTH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhCCCccceEEEEcchhhhhhHHHHHHHHHhceeEHHHHhccchhhhhccCCCCChH
Confidence 6999999999 8888 8899999999999999999998764 788889999999999999875 432 458999
Q ss_pred ccchhhhhcCCCCCCCccccccCCCCcccccccccChhhHHHHHHHHHHHhCC--------C-CceeeecccccCCCCC-
Q 020745 205 KVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGY--------H-KPALIESSFFPALQGE- 274 (322)
Q Consensus 205 ~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~~ltrdla~k~~~--------~-kp~~l~~~~lp~L~G~- 274 (322)
+|+||+||||| ++.+++ +++|||.||+||++++||+|+|+|+ . +|.++++++||+|+|+
T Consensus 165 ~f~YP~LQaaD--------il~~~~---~~vp~G~DQ~~~i~l~rdla~r~n~~~~~~~g~~~~~~~~~~~~l~gL~g~~ 233 (375)
T 2cyc_A 165 KLIYPMMQVAD--------IFYQGV---TIAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPP 233 (375)
T ss_dssp HHHHHHHHHHH--------HHHTTC---SEEEEEGGGHHHHHHHHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCS
T ss_pred HHHHHHHHHHH--------HHHhCC---CeecccchHHHHHHHHHHHHHHhCCcccccccccCccEEeccccccCCCCcc
Confidence 99999999996 555666 6789999999999999999999998 4 7888999999999985
Q ss_pred ---------------CCcCCCCCCCCeeecCCCHHHHHHHHhccCccCCC
Q 020745 275 ---------------TGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQ 309 (322)
Q Consensus 275 ---------------~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t~~~ 309 (322)
++|||||.|+|+|||+|+|++|++|||+ |+|++.
T Consensus 234 ~~~~~~~~~~~~~~~~~KMSKS~~~~~I~L~d~p~~i~~KI~~-A~t~~~ 282 (375)
T 2cyc_A 234 KWPIESEEEFKEIKAQMKMSKSKPYSAVFIHDSPEEIRQKLRK-AFCPAR 282 (375)
T ss_dssp SSSCCSHHHHHHHHHHHBGGGSCGGGSCBTTCCHHHHHHHHHH-SCCCTT
T ss_pred cccccchhhhhhhhhhhcccCCCCCCeeccCCCHHHHHHHHHH-hcCCCC
Confidence 4899999988999999999999999999 566653
No 13
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=100.00 E-value=3.9e-54 Score=417.55 Aligned_cols=236 Identities=23% Similarity=0.292 Sum_probs=209.4
Q ss_pred hhhhhcCceeecCCHHHHHHHHHhCCceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccC--C
Q 020745 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--L 136 (322)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~--~ 136 (322)
-.|++|| +..+.+.++|.+.+++|+++++|+||+||| +|||||+++++.++|||++ |+.++++|||+|+++.++ .
T Consensus 10 ~~l~~r~-~~e~~~~~~L~~~l~~~~~~~iy~G~~PTg-~lHlG~l~~l~~~~~lQ~~-G~~~~~~iaD~~a~~~~ps~~ 86 (364)
T 2cya_A 10 FNRIARN-TVEIVTEEELKGLLASGARIKGYIGYEPSG-VAHIGWLVWMYKVKDLVEA-GVDFSVLEATWHAYINDKLGG 86 (364)
T ss_dssp HHHHHTT-CSEEETHHHHHHHHHHCSCCEEEEEECCCS-SCBTHHHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTGGGG
T ss_pred HHHHHcC-chhcCCHHHHHHHHhcCCCCEEEeccCCCC-CccHhHHHHHHHHHHHHHC-CCCEEEEEeCcchhhCCCCCC
Confidence 4578999 777778888888889889999999999999 8999998899999999997 889999999999988764 7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccccc-ccHHHHHHHHcccCHHHHHHhh---CCC---CCccccccchh
Q 020745 137 SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIF---GFT---GEDHIGKVSFP 209 (322)
Q Consensus 137 ~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~~-~~~~~~~~l~k~~t~~~~~~~~---g~~---~~~s~~~~~YP 209 (322)
+++++++++++++++|+|+|+||+++.||.||+|..+ .+|..++++++++|+++|+++. ++. .++++|+|+||
T Consensus 87 ~~e~i~~~~~~~~~~~la~G~dp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~k~r~~~~~~i~~g~~~YP 166 (364)
T 2cya_A 87 DMDLIRAAARIVRRVMEAAGVPVERVRFVDAEELASDKDYWGLVIRVAKRASLARVRRALTIMGRRAEEAEVDASKLIYP 166 (364)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCGGGCEEEEHHHHHTCHHHHHHHHHHHHTSCHHHHHTTC------CCGGGSCTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCCccceEEEecchhhcchHHHHHHHHHHCcCcHHHHHcCchhhhhhcCCCCccchhhhhH
Confidence 9999999999999999999999999999999999865 4788889999999999999874 332 25889999999
Q ss_pred hhhcCCCCCCCccccccCCCCcccccccccChhhHHHHHHHHHHHhCCCCceeeecccccCCCC---------------C
Q 020745 210 PVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG---------------E 274 (322)
Q Consensus 210 ~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G---------------~ 274 (322)
+||||| ++.+++ +++|+|.||+||++++||+|+|+|+++|..+++++||+|+| +
T Consensus 167 ~LQaaD--------il~~~~---~~v~~G~DQ~~~~~l~rdla~r~~~~~p~~l~~~ll~~l~g~~~~~~~~~~~~~~~~ 235 (364)
T 2cya_A 167 LMQVSD--------IFYMDL---DIALGGMDQRKAHMLARDVAEKLGRKKPVAIHTPIISSLQGPGRMEASQGEIDDVLA 235 (364)
T ss_dssp HHHHHH--------HHHTTC---SEEEEEGGGHHHHHHHHHHHTTTTCCCCEEEEECCCBCSSCC---------------
T ss_pred HHHHhh--------HHhcCC---CEEeccchHHHHHHHHHHHHHHcCCCCceeeccceeeCCCccccccccccccccccc
Confidence 999996 555666 67899999999999999999999999999999999999997 5
Q ss_pred CCcCCCCCCCCeeecCCCHHHHHHHHhccCccCCC
Q 020745 275 TGKMSASDPNSAIYVTDSAKAIKNKIILLKCADKQ 309 (322)
Q Consensus 275 ~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t~~~ 309 (322)
++|||||+++|+|||+|+|++|++||++ |+||+.
T Consensus 236 g~KMSKS~~~~~I~L~d~p~~i~~Ki~~-a~td~~ 269 (364)
T 2cya_A 236 EVKMSKSKPETAVFVVDSDDDIRRKIRK-AYCPAK 269 (364)
T ss_dssp -CBCCSSSGGGSCBTTCCHHHHHHHHHT-SCCCTT
T ss_pred ccccCCCCCCCEeeccCCHHHHHHHHHh-CcCCCC
Confidence 7999999878999999999999999999 666654
No 14
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYE; 2.20A {Acanthamoeba polyphaga mimivirus}
Probab=100.00 E-value=9.2e-54 Score=412.68 Aligned_cols=234 Identities=21% Similarity=0.298 Sum_probs=195.2
Q ss_pred hhhhhcCc--eeecCCHHHHHHHHHhCCceEEEEeeccCCCCcchhh-hHHHHHHHHHHHhCCceEEEEeeCcccccccC
Q 020745 59 HVFLRRGV--FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGH-LVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135 (322)
Q Consensus 59 ~~l~~Rgi--~~~~~d~~~ll~~~~~~~~~~vytG~~PSg~slHlGh-li~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~ 135 (322)
-.+++||+ +++|++++++|+ +++++++|+||+||| +||||| +++++.++|||++ |+.++++|||+|+++.++
T Consensus 15 ~~l~~r~~~e~~~~~~L~~~L~---~~~~~~vy~G~~PTg-~lHlGhyl~~l~~~~~lQ~~-G~~~~~~i~D~~a~~~~~ 89 (348)
T 2j5b_A 15 LTQLLSIAEECETLDRLKQLVD---SGRIFTAYNGFEPSG-RIHIAQALITVMNTNNMIEC-GGQMIIYIADWFAKMNLK 89 (348)
T ss_dssp HHHHHTTCSEESCHHHHHHHHH---HTCCEEEEEEECCCS-SCBHHHHHHHHHHHHHHHHT-TEEEEEEECHHHHHHTTG
T ss_pred HHHHHcCcccccCHHHHHHHHh---cCCCCEEEeccCCCC-CCchhHHHHHHHHHHHHHHc-CCcEEEEeccchhhhCCC
Confidence 45688997 456666666554 467999999999998 999999 6788899999997 889999999999988765
Q ss_pred --CCHHHHHHHHHHHHHHHHHcCCCCCceEEEecccccc-c-ccHHHHHHHHcccCHHHHHHh---hCCC--CCcccccc
Q 020745 136 --LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG-G-AFYKNMVKVAKCVTYNKVVGI---FGFT--GEDHIGKV 206 (322)
Q Consensus 136 --~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~-~-~~~~~~~~l~k~~t~~~~~~~---~g~~--~~~s~~~~ 206 (322)
.+++++++++++++++|+|+|+||+++.||.||+|.. + .+|..+.++++++|+++|+++ .++. +++|+|+|
T Consensus 90 ~~~~~e~i~~~~~~~~~~~la~Gldp~k~~i~~qs~~~~~~~~~~~~~~~v~~~~~~~~m~~~~~~~~r~~~~~i~~g~f 169 (348)
T 2j5b_A 90 MNGDINKIRELGRYFIEVFKACGINLDGTRFIWASEFIASNPSYIERMLDIAEFSTISRVKRCCQIMGRNESDCLKASQI 169 (348)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHHHCHHHHHHHHHHHHHHHHHHHTC-----------------C
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCccceEEEECCHhhhhhhHHHHHHHHHHhheeHHHHHhhhhhhhhhccCCcChHHH
Confidence 6999999999999999999999999999999999942 2 678888899999999999974 3432 46899999
Q ss_pred chhhhhcCCCCCCCccccccC---CCCcccccccccChhhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCC
Q 020745 207 SFPPVQAVPSFPSSFPHLFSG---KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDP 283 (322)
Q Consensus 207 ~YP~lQaad~~~~~f~~i~~~---~~~~~~lvp~G~DQd~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p 283 (322)
+||+|||||+| .+ ++ +++|+|.||+||++++||+|+|+|+..|.++++++||+|+++.+|||||.|
T Consensus 170 ~YP~lQaaDil--------~~~~~~~---~~~~~G~DQ~~~i~l~Rdia~r~~~~~p~~~~~~~l~gL~dg~~KMSKS~~ 238 (348)
T 2j5b_A 170 FYPCMQAADVF--------ELVPEGI---DICQLGIDQRKVNMLAIEYANDRGLKIPISLSHHMLMSLSGPKKKMSKSDP 238 (348)
T ss_dssp CHHHHHHHHHH--------HSSTTCC---SEECCBGGGHHHHHHHHHHHHHTTCCCCEEEEBCCCCCTTCSSCCCSTTCG
T ss_pred hhHHHHHHHHH--------HHhcCCC---cEEEeccChHHHHHHHHHHHHHhCCCCceeecCccccCCCCcccccccCCC
Confidence 99999999754 34 44 678999999999999999999999999999999999999764579999998
Q ss_pred CCeeecCCCHHHHHHHHhccCccCCC
Q 020745 284 NSAIYVTDSAKAIKNKIILLKCADKQ 309 (322)
Q Consensus 284 ~~aI~L~D~p~~i~~KI~k~a~t~~~ 309 (322)
+|+|||+|+|++|++|||+ |+||+.
T Consensus 239 ~~~I~L~d~p~~i~kKI~k-a~td~~ 263 (348)
T 2j5b_A 239 QGAIFMDDTEQEVSEKISR-AYCTDE 263 (348)
T ss_dssp GGSCBTTCCHHHHHHHHHH-SCCCSS
T ss_pred CCeEeecCCHHHHHHHHhc-ccCCCC
Confidence 8999999999999999999 677664
No 15
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=100.00 E-value=1.2e-53 Score=408.11 Aligned_cols=231 Identities=16% Similarity=0.199 Sum_probs=201.3
Q ss_pred hhhhhcCceeecCCHHHHHHHHHhCCceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccC---
Q 020745 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN--- 135 (322)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~--- 135 (322)
+.|++||++++|+|+++|+++++ ++++++|+||+|||+||||||+++++.++|||++ |+.++++|||+|+.+..+
T Consensus 8 ~~l~~Rg~~~~~~~~~~l~~~l~-~~~~~vy~G~~PTg~slHlGh~l~l~~~~~lQ~~-g~~~~~~i~D~~a~~~dp~g~ 85 (322)
T 2yxn_A 8 KQLQERGLVAQVTDEEALAERLA-QGPIALVCGFDPTADSLHLGHLVPLLCLKRFQQA-GHKPVALVGGATGLIGDPSFK 85 (322)
T ss_dssp HHHHHTTCCSEESSHHHHHHHHH-HSCCEEEEEECCSSSSCBHHHHHHHHHHHHHHHT-TCEEEEEECTTGGGTCCCTTC
T ss_pred HHHHHCCceeeeCCHHHHHHHHc-CCCCEEEEeecCCCCcccHHHHHHHHHHHHHHHc-CCcEEEEEccceeeecCCCCc
Confidence 68999999999999999999998 5789999999999977999999999999999997 677889999999977533
Q ss_pred ------CCHHHHHHHH---HHHHHHHHHcCCCCCceEEEecccccccccHHHHHH-HHcccCHHHHHH------hhCC-C
Q 020745 136 ------LSVEESQRLA---RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVG------IFGF-T 198 (322)
Q Consensus 136 ------~~~e~i~~~~---~~~~~~iiA~G~dp~kt~I~~ns~~~~~~~~~~~~~-l~k~~t~~~~~~------~~g~-~ 198 (322)
++.+++++|+ ++++++|+|+|+||++++||+|++|..+..+.++++ +++++++++|.+ ++++ .
T Consensus 86 ~~~R~~l~~e~i~~n~~~~~~~~~~~la~g~dp~k~~i~~qs~w~~~~~~l~~l~~~~~~~~v~~m~~~~~~k~r~~~~~ 165 (322)
T 2yxn_A 86 AAERKLNTEETVQEWVDKIRKQVAPFLDFDCGENSAIAANNYDWFGNMNVLTFLRDIGKHFSVNQMINKEAVKQRLNRED 165 (322)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHGGGSCSSSGGGCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHTTCHHHHHHHHCTT
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHcCCCccceEEEecchhhccCcHHHHHHHHhccccHHHHhhhHHHHHHhccCC
Confidence 4999999999 788889999999999999999999987767777775 888888877765 3443 3
Q ss_pred CCccccccchhhhhcCCCCCCCccccccCCCCccccccc-ccChhhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCc
Q 020745 199 GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC-AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGK 277 (322)
Q Consensus 199 ~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~-G~DQd~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~K 277 (322)
+++|+|+|+||+|||||+ +.+..+++|.||+ |.||+||++++||+|+|+|..++..++.++||+++| +|
T Consensus 166 ~~is~g~f~YP~LQaaDi--------l~l~~~~~~~v~~gG~DQ~~~i~l~rdla~r~n~~~~~~l~~pll~gldG--~K 235 (322)
T 2yxn_A 166 QGISFTEFSYNLLQGYDF--------ACLNKQYGVVLCIGGSDQWGNITSGIDLTRRLHQNQVFGLTVPLITKADG--TK 235 (322)
T ss_dssp CCCCHHHHTHHHHHHHHH--------HHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTS--CB
T ss_pred CCccchhhhHHHHHHHHH--------HHHhccCCceEEecCchhHHHHHHHHHHHHHhCCCCceeeccCccCCCCc--cc
Confidence 578999999999999974 4331123477765 999999999999999999998899999999999997 79
Q ss_pred CCCCCCCCeeecCC---CHHHHHHHHhc
Q 020745 278 MSASDPNSAIYVTD---SAKAIKNKIIL 302 (322)
Q Consensus 278 MSkS~p~~aI~L~D---~p~~i~~KI~k 302 (322)
||||.+ |+|||+| +|+++++||++
T Consensus 236 MSKS~~-n~I~L~d~~tsp~~~~~ki~~ 262 (322)
T 2yxn_A 236 FGKTEG-GAVWLDPKKTSPYKFYQFWIN 262 (322)
T ss_dssp TTEETT-EECBSSTTTSCHHHHHHHHHT
T ss_pred ccCCCC-CeeeccCCCCCHHHHHHHHhC
Confidence 999995 6999999 99999999999
No 16
>3vgj_A Tyrosyl-tRNA synthetase, putative; tyrrs, ligase; HET: YAP; 2.21A {Plasmodium falciparum}
Probab=100.00 E-value=3.8e-52 Score=404.45 Aligned_cols=235 Identities=16% Similarity=0.213 Sum_probs=200.7
Q ss_pred hhhhhcCceeecCCHHHHHHHHHhCCceEEEEeeccCCCCcchhhhHHH-HHHHHHHHhCCceEEEEeeCcccccccC--
Q 020745 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPF-MFTKYLQDAFKVPLVIQLTDDEKCMWKN-- 135 (322)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PSg~slHlGhli~~-~~~~~lQ~~~g~~v~I~IaD~~~~l~r~-- 135 (322)
-.+++||+.. +.+.++|.+.+++|+++++|+||+||| +|||||++.. +.+++||++ |+.++++|||+|+++.++
T Consensus 31 ~~li~r~~~e-~~~~~~L~~~L~~~~~~~iy~G~~PTg-~lHlG~gvl~~~~~~~lQ~~-G~~~~~lIaD~ha~i~d~~~ 107 (373)
T 3vgj_A 31 LNDILSISSE-CIQPDELRVKLLLKRKLICYDGFEPSG-RMHIAQGLLKSIIVNKLTSN-GCTFIFWIADWFAHLNNKMS 107 (373)
T ss_dssp HHHHHHHCSE-EECHHHHHHHHHHCSSCEEEEEECCCS-SCBHHHHHHHHHHHHHHHTT-TCEEEEEECHHHHHHTTGGG
T ss_pred HHHHHcCcce-ecCHHHHHHHHhcCCCceEEeCCCCCC-CceehhhHHHHHHHHHHHHC-CCcEEEEEecceeEecCCCC
Confidence 4578899864 334455666666788999999999999 9999997643 357889997 889999999999988764
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc-c--cccHHHHHHHHcccCHHHHHHhh---CCC--CCccccccc
Q 020745 136 LSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV-G--GAFYKNMVKVAKCVTYNKVVGIF---GFT--GEDHIGKVS 207 (322)
Q Consensus 136 ~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~-~--~~~~~~~~~l~k~~t~~~~~~~~---g~~--~~~s~~~~~ 207 (322)
.+++++++++.++++.|+|+|+||+++.||.||+|. + ..+|..+.++++++|+++|+++. ++. +++++|+|+
T Consensus 108 ~~~~~i~~~~~~~~~~~~a~G~dp~k~~i~~~S~~~~~~~~l~~~~~~~i~~~~tv~rm~~~~~~~~r~~~~~~~~g~f~ 187 (373)
T 3vgj_A 108 GDLKKIKKVGSYFIEVWKSCGMNMENVQFLWASEEINKKPNEYWSLVLDISRSFNINRMKRCLKIMGRSEGEENYCSQIL 187 (373)
T ss_dssp GCHHHHHHHHHHHHHHHHHTTCCSTTEEEEEHHHHHHHSHHHHHHHHHHHHTTSBHHHHHTTGGGGTCCTTSCCBTHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCChhheEEEeChhHHhhhhHHHHHHHHHHHccCcHHHHHhhhHHHhhhccCCCChHHHH
Confidence 789999999999999999999999999999999997 3 35788888999999999999864 333 479999999
Q ss_pred hhhhhcCCCCCCCccccccCCCCcccccccccChhhHHHHHHHHHHHhCCC-CceeeecccccCCCCCCCcCCCCCCCCe
Q 020745 208 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPNSA 286 (322)
Q Consensus 208 YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~~ltrdla~k~~~~-kp~~l~~~~lp~L~G~~~KMSkS~p~~a 286 (322)
||+||||| ++.+++ +++|+|.||+||++++||+|+|+|+. +|+++++++||+|+++.+|||||.|+|+
T Consensus 188 YPlLQaaD--------il~l~a---d~vpgG~DQ~~~l~l~Rdla~r~~~~~~~~~l~~p~l~gL~dG~~KMSKS~~~~~ 256 (373)
T 3vgj_A 188 YPCMQCAD--------IFFLNV---DICQLGIDQRKVNMLAREYCDIKKIKKKPVILSHGMLPGLLEGQEKMSKSDENSA 256 (373)
T ss_dssp HHHHHHHH--------HHHTTC---SEECCBGGGHHHHHHHHHHHHHHTCSCCCEEEEBCCCCCSSTTCCSCCSSSTTCC
T ss_pred HHHHHHhc--------ccccCC---cEEEcchhhHHHHHHHHHHHHHhCCCCCceEEeCCeeecCCCCCCCCcCCCCCCe
Confidence 99999996 556676 46799999999999999999999986 7888999999999432469999998899
Q ss_pred eecCCCHHHHHHHHhccCccCC
Q 020745 287 IYVTDSAKAIKNKIILLKCADK 308 (322)
Q Consensus 287 I~L~D~p~~i~~KI~k~a~t~~ 308 (322)
|||+|+|++|++|||+ |+||+
T Consensus 257 I~L~D~p~~i~~KI~k-A~td~ 277 (373)
T 3vgj_A 257 IFMDDSESDVNRKIKK-AYCPP 277 (373)
T ss_dssp CBTTCCHHHHHHHHHH-SCCCT
T ss_pred eecCCCHHHHHHHHHh-CcCCC
Confidence 9999999999999999 55554
No 17
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=100.00 E-value=2.6e-52 Score=411.41 Aligned_cols=232 Identities=14% Similarity=0.156 Sum_probs=201.7
Q ss_pred hhhhhcCceeecCCHHHHHHHHHhCCceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCccccccc----
Q 020745 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWK---- 134 (322)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r---- 134 (322)
..|++||++++|++.++|.+.+++ +++++|+||+|||++|||||+++++.++|||++ |+.++++|||.|+.+..
T Consensus 7 ~~L~~RG~~~~~~~~e~L~~~L~~-~~~~iy~G~dPTg~sLHLGhlv~l~~l~~lQ~~-G~~~i~lIgD~ta~igdpsk~ 84 (432)
T 2jan_A 7 DELSWRGLIAQSTDLDTLAAEAQR-GPMTVYAGFDPTAPSLHAGHLVPLLTLRRFQRA-GHRPIVLAGGATGMIGDPRDV 84 (432)
T ss_dssp HHHHHHTCCSEESCHHHHHHHHHH-SCCEEEEEECCSSSSCBGGGHHHHHHHHHHHHT-TCEEEEEECHHHHHHHCCCCT
T ss_pred HHHHHcCchhhcCCHHHHHHHHcC-CCCEEEEeeCCCCCCcCHHHHHHHHHHHHHHHC-CCcEEEEEcCcEEEccCCccc
Confidence 578999999999999999988874 789999999999988999999999999999997 67778888887775543
Q ss_pred ---C-CCHHHHHHHHHHH---HHHHHHcCCCCCceEEEecccccccccHHHHHH-HHcccCHHHHHHhhCC-----CCCc
Q 020745 135 ---N-LSVEESQRLAREN---AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFGF-----TGED 201 (322)
Q Consensus 135 ---~-~~~e~i~~~~~~~---~~~iiA~G~dp~kt~I~~ns~~~~~~~~~~~~~-l~k~~t~~~~~~~~g~-----~~~~ 201 (322)
+ ++.+++++|++++ ++.|+|+|+||+++.||+|++|+++..+..+++ +++++|+++|+++..+ .+++
T Consensus 85 ~~R~~~~~e~i~~n~~~~~~~~~~~La~G~dp~k~~i~~nsdw~~~~~~l~~lr~l~~~~tv~~m~~~~~~k~r~~~~~i 164 (432)
T 2jan_A 85 GERSLNEADTVAEWTERIRGQLERFVDFDDSPMGAIVENNLEWTGSLSAIEFLRDIGKHFSVNVMLARDTIRRRLAGEGI 164 (432)
T ss_dssp TTSGGGHHHHHHHHHHHHHHHHHHHSCCSSSTTCCEEEETHHHHSSCBHHHHHHHTGGGCBHHHHHHSHHHHHHTSTTCC
T ss_pred ccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEECchhcccCcHHHHHHHHhccCcHHHHhcchHHhhhhcCCCc
Confidence 3 8899999999654 777899999999999999999987777888887 9999999999987543 4578
Q ss_pred cccccchhhhhcCCCCCCCccccccCCCCccc-ccccccChhhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCC
Q 020745 202 HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSA 280 (322)
Q Consensus 202 s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~-lvp~G~DQd~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSk 280 (322)
|+|+|+||+|||||+ +.+..+++| ++|+|.||+||++++||+|+|+|..+|+.++.++||+++| +||||
T Consensus 165 s~~ef~YPlLQaaDi--------l~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~l~~plL~~ldG--~KMSK 234 (432)
T 2jan_A 165 SYTEFSYLLLQANDY--------VELHRRHGCTLQIGGADQWGNIIAGVRLVRQKLGATVHALTVPLVTAADG--TKFGK 234 (432)
T ss_dssp BHHHHHHHHHHHHHH--------HHHHHHHCCCEEEECSTTHHHHHHHHHHHHHHHCCCCEEEECCCCBCTTS--CBTTB
T ss_pred chHHHHHHHHHHHHH--------HHHhccCCCcEEeccHHHHHHHHHHHHHHHHhCCCCccccccccccCCCc--CcCCC
Confidence 999999999999974 444111223 4479999999999999999999998999999999999998 79999
Q ss_pred CCCCCeeecCC---CHHHHHHHHhc
Q 020745 281 SDPNSAIYVTD---SAKAIKNKIIL 302 (322)
Q Consensus 281 S~p~~aI~L~D---~p~~i~~KI~k 302 (322)
|.+|++|||+| +|+++++||++
T Consensus 235 S~~nsaI~L~d~~tsp~~i~qki~~ 259 (432)
T 2jan_A 235 STGGGSLWLDPQMTSPYAWYQYFVN 259 (432)
T ss_dssp CSSSCBCBSSTTTSCHHHHHHHHHT
T ss_pred CCCCCeEEccCCCCCHHHHHHHHhc
Confidence 99655999999 99999999999
No 18
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=100.00 E-value=8.5e-51 Score=388.51 Aligned_cols=233 Identities=24% Similarity=0.324 Sum_probs=207.6
Q ss_pred hhhhhcCceeecCCHHHHHHHHHhCCceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccCCCH
Q 020745 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSV 138 (322)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~ 138 (322)
-.+++||++..+++ ++|.+.+++++++++|+||+||| +|||||+++++..++||++ |+.++++|||+|+++.+..++
T Consensus 7 ~~l~~rg~~e~~~~-~~l~~~l~~~~~~~vy~G~~PTg-~lHlG~l~~l~~~~~lq~~-g~~~~~~i~D~~a~~~d~~~~ 83 (323)
T 2cyb_A 7 LRLITRNAEEVVTE-EELRQLIETKEKPRAYVGYEPSG-EIHLGHMMTVQKLMDLQEA-GFEIIVLLADIHAYLNEKGTF 83 (323)
T ss_dssp HHHHHTTCSEEETH-HHHHHHHHSCSCCEEEEEECCCS-CCBHHHHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTCCCH
T ss_pred HHHHHcCChhhcCH-HHHHHHHhCCCCCEEEECcCCCC-cchHHHHHHHHHHHHHHHC-CCcEEEEECCceeEcCCCCCH
Confidence 46789999888874 77888888788999999999999 8999999999889999997 788999999999988764699
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCceEEEeccccccc-ccHHHHHHHHcccCHHHHHHhh---CCC-CCccccccchhhhhc
Q 020745 139 EESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIF---GFT-GEDHIGKVSFPPVQA 213 (322)
Q Consensus 139 e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~~-~~~~~~~~l~k~~t~~~~~~~~---g~~-~~~s~~~~~YP~lQa 213 (322)
+++++++++++++|+|+|+||+++.||.||+|..+ .++..++.+++++|+++|.++. ++. ++.++|+|+||++||
T Consensus 84 ~~i~~~~~~~~~~~~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~~~~~~~g~~~YP~lqa 163 (323)
T 2cyb_A 84 EEIAEVADYNKKVFIALGLDESRAKFVLGSEYQLSRDYVLDVLKMARITTLNRARRSMDEVSRRKEDPMVSQMIYPLMQA 163 (323)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCEEEEGGGTTTSHHHHHHHHHHHHHSBHHHHHHHTTTTCSCSSSCBTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCccceEEEEcchhccchHHHHHHHHHhCccCHHHHhccchhhccccCCCCchhhhhHHHHH
Confidence 99999999999999999999999999999999754 5777788899999999999875 443 346999999999999
Q ss_pred CCCCCCCccccccCCCCcccccccccChhhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCCCH
Q 020745 214 VPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSA 293 (322)
Q Consensus 214 ad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p 293 (322)
|| ++.+++ ++||+|.||++|++++||+|+|+|+++|..+++++||+|+| +||||| ++|+|||+|+|
T Consensus 164 aD--------~l~~~~---~~v~~G~DQ~~~~~l~rdla~~~~~~~p~~l~~pll~~l~G--~KMSKS-~~n~I~l~d~p 229 (323)
T 2cyb_A 164 LD--------IAHLGV---DLAVGGIDQRKIHMLARENLPRLGYSSPVCLHTPILVGLDG--QKMSSS-KGNYISVRDPP 229 (323)
T ss_dssp HH--------HHHTTC---SEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCBCTTS--SBCCTT-TTCSCBTTCCH
T ss_pred HH--------HHhcCC---CEEEechhhHHHHHHHHHHHHhcCCCCceEEecCcccCCCC--CcccCC-cCceeCCCCCH
Confidence 96 455565 67899999999999999999999999999999999999997 899999 58999999999
Q ss_pred HHHHHHHhccCccCCC
Q 020745 294 KAIKNKIILLKCADKQ 309 (322)
Q Consensus 294 ~~i~~KI~k~a~t~~~ 309 (322)
++|++||++ |+||+.
T Consensus 230 ~~i~~Ki~~-a~td~~ 244 (323)
T 2cyb_A 230 EEVERKIRK-AYCPAG 244 (323)
T ss_dssp HHHHHHHHT-SCCCTT
T ss_pred HHHHHHHHh-cCCCCC
Confidence 999999999 666654
No 19
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=100.00 E-value=2.7e-51 Score=403.27 Aligned_cols=231 Identities=15% Similarity=0.185 Sum_probs=199.2
Q ss_pred hhhhhcCceeecCCHHHHHHHHHhCCceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccc-----
Q 020745 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMW----- 133 (322)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~----- 133 (322)
..|.+||++++|++.++|.+.+++ +++++|+||+|||+||||||+++++.++|||++ |+.++++|||.|+.+.
T Consensus 5 ~~L~~Rg~~~~~~~~~~L~~~L~~-~~~~iy~G~dPTg~sLHlGh~v~l~~l~~lQ~~-G~~~i~lIgd~ta~igdpsgk 82 (419)
T 2ts1_A 5 AELQWRGLVNQTTDEDGLRKLLNE-ERVTLYCGFDPTADSLHIGHLATILTMRRFQQA-GHRPIALVGGATGLIGDPSGK 82 (419)
T ss_dssp HHHHHHTCCSEESCHHHHHHHHHH-SCCEEEEEECCSSSSCBGGGHHHHHHHHHHHHT-TCEEEEEECTTGGGTCCCTTC
T ss_pred HHHHHcCchhhcCCHHHHHHHHcC-CCCEEEEeeCCCCCCccHHHHHHHHHHHHHHHC-CCcEEEEEcCceeEecCCCCc
Confidence 468999999999999999988874 689999999999988999999999999999997 7778888898887654
Q ss_pred ---cC-CCHHHHHHHHHHH---HHHHHHcCCCCCceEEEecccccccccHHHHHH-HHcccCHHHHHHhhCC----CCCc
Q 020745 134 ---KN-LSVEESQRLAREN---AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFGF----TGED 201 (322)
Q Consensus 134 ---r~-~~~e~i~~~~~~~---~~~iiA~G~dp~kt~I~~ns~~~~~~~~~~~~~-l~k~~t~~~~~~~~g~----~~~~ 201 (322)
|+ ++.+++++|+.++ ++.++++|+||+++.||+|++|+.+..+..+++ +++++|+++|.++..+ .+++
T Consensus 83 ~~~R~~l~~e~i~~n~~~~~~q~~~~L~~g~dp~k~~i~~ns~w~~~~~~~~~l~~~~~~~tv~rm~~~~~~k~r~~~~i 162 (419)
T 2ts1_A 83 KSERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIGPLDVITFLRDVGKHFSVNYMMAKESVQSRIETGI 162 (419)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHTTSSCSSCSSSCCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTSHHHHTTTTTCC
T ss_pred cccccCCCHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEchhhhhhchHHHHHHHHhcccCHHHHhccchhhhccCCCc
Confidence 33 5999999999765 556678999999999999999987777888777 9999999999987543 4689
Q ss_pred cccccchhhhhcCCCCCCCccccccCCCCccccc-ccccChhhHHHHHHHHHHHh-CCCCceeeecccccCCCCCCCcCC
Q 020745 202 HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLI-PCAIDQDPYFRMTRDVAPRI-GYHKPALIESSFFPALQGETGKMS 279 (322)
Q Consensus 202 s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lv-p~G~DQd~~~~ltrdla~k~-~~~kp~~l~~~~lp~L~G~~~KMS 279 (322)
|+|+|+||+|||||+ +.+..+++|.+ |+|.||+||++++||+|+|+ |..+|+.++.++||+++| +|||
T Consensus 163 s~~ef~YPlLQaaDi--------l~l~~~~~~~i~~gG~DQ~~ni~lgrdlarr~~~~~~~~~lt~pll~~ldG--~KMS 232 (419)
T 2ts1_A 163 SFTEFSYMMLQAYDF--------LRLYETEGCRLQIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADG--TKFG 232 (419)
T ss_dssp CHHHHHHHHHHHHHH--------HHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHC--CCEEEEECCCCCTTS--CCTT
T ss_pred chHHHHHHHHHHHHH--------HHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeecccccccCCCc--cccc
Confidence 999999999999974 33311223544 68999999999999999999 988899999999999998 7999
Q ss_pred CCCCCCeeecCC---CHHHHHHHHhc
Q 020745 280 ASDPNSAIYVTD---SAKAIKNKIIL 302 (322)
Q Consensus 280 kS~p~~aI~L~D---~p~~i~~KI~k 302 (322)
||. +|+|||+| +|+++++||++
T Consensus 233 KS~-~naI~L~d~~tsp~~i~qki~~ 257 (419)
T 2ts1_A 233 KTE-SGTIWLDKEKTSPYEFYQFWIN 257 (419)
T ss_dssp CCS-SCCCBSSTTTSCHHHHHHHHHT
T ss_pred CCC-CCeEecCCCCCCHHHHHHHHhc
Confidence 998 78999999 99999999999
No 20
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP-BI ligase, mitochondrion, nucleotide-binding, protein biosynth; HET: YSA; 2.20A {Homo sapiens} PDB: 3zxi_A*
Probab=100.00 E-value=1.6e-51 Score=398.00 Aligned_cols=228 Identities=14% Similarity=0.155 Sum_probs=183.8
Q ss_pred hhhhhcCce--eecC-----CHHHHHHHHHhCCceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccc
Q 020745 59 HVFLRRGVF--FAHR-----DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKC 131 (322)
Q Consensus 59 ~~l~~Rgi~--~~~~-----d~~~ll~~~~~~~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~ 131 (322)
+.|++||++ ++++ +++++|+..++|+|+++|+||+|||++|||||+++++.++|||++ |+.++++|||+|+.
T Consensus 13 ~~l~~Rg~~~~~~~~~~~~~~L~~~L~~~~~g~~~~vy~G~~PTg~sLHLGhl~~l~~~~~lQ~~-G~~~~~lIaD~hal 91 (356)
T 2pid_A 13 AAQKARGLFKDFFPETGTKIELPELFDRGTASFPQTIYCGFDPTADSLHVGHLLALLGLFHLQRA-GHNVIALVGGATAR 91 (356)
T ss_dssp HHHHHHTSCCEEECSSCTTSCGGGGC-------CCEEEEEECCSSSSCBHHHHHHHHHHHHHHHT-TCEEEEEECTTGGG
T ss_pred HHHHHcCChheeCCccccHHHHHHHHhcCccCCCCEEEEeecCCCCcccHHHHHHHHHHHHHHHC-CCcEEEEEccceee
Confidence 889999999 8888 899888876667789999999999977999999999999999996 78889999999986
Q ss_pred ccc--------C-CCHHHHHHHHHHHHHHHHHcCCCCCc-----------eEEEecccccccccHHHHHH-HHcccCHHH
Q 020745 132 MWK--------N-LSVEESQRLARENAKDIIACGFDVTK-----------TFIFSDFDYVGGAFYKNMVK-VAKCVTYNK 190 (322)
Q Consensus 132 l~r--------~-~~~e~i~~~~~~~~~~iiA~G~dp~k-----------t~I~~ns~~~~~~~~~~~~~-l~k~~t~~~ 190 (322)
+.. + ++++++++|+++++++|+|+ +||++ +.|++|++|..+..+..+++ +++++++++
T Consensus 92 ~~dp~g~~~~R~~l~~e~i~~n~~~~~~~~~a~-lDp~~~~~qs~~~~~~~~i~~ns~w~~~~~~~~~l~~~~~~~~v~~ 170 (356)
T 2pid_A 92 LGDPSGRTKEREALETERVRANARALRLGLEAL-AANHQQLFTDGRSWGSFTVLDNSAWYQKQHLVDFLAAVGGHFRMGT 170 (356)
T ss_dssp TCCCTTCSSCCCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHSCCSSCCCCEEEEETHHHHTTCBHHHHHHHHGGGSBHHH
T ss_pred ecCCcccccccccCCHHHHHHHHHHHHHHHHHh-cChhhccccccCCCcceEEEechHhhhhccHHHHHHHHhcceeHHH
Confidence 643 2 58999999999999999999 88754 89999999987665666665 999999999
Q ss_pred HHHhhCC------CCCccccccchhhhhcCCCCCCCccccccC----CCCcccccccccChhhHHHHHHHHHHHhCCCCc
Q 020745 191 VVGIFGF------TGEDHIGKVSFPPVQAVPSFPSSFPHLFSG----KDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKP 260 (322)
Q Consensus 191 ~~~~~g~------~~~~s~~~~~YP~lQaad~~~~~f~~i~~~----~~~~~~lvp~G~DQd~~~~ltrdla~k~~~~kp 260 (322)
|.++.++ .+++|+|+|+||+||||| ++.+ ++ .++|||.||+||++++||+|+|+|..+|
T Consensus 171 m~~~~~~k~r~~~~~~is~g~f~YPvLQAaD--------il~l~~~~~~---~i~p~G~DQ~~~i~l~rdla~r~n~~~~ 239 (356)
T 2pid_A 171 LLSRQSVQLRLKSPEGMSLAEFFYQVLQAYD--------FYYLFQRYGC---RVQLGGSDQLGNIMSGYEFINKLTGEDV 239 (356)
T ss_dssp HHHCHHHHHHHTSTTCCBHHHHHHHHHHHHH--------HHHHHHHHCC---CEEEEEGGGHHHHHHHHHHHHHHSSCCC
T ss_pred HhcchHHHHhhccCCCCchHHHHHHHHHHHH--------HHHHhccCCC---cEEeccHHHHHHHHHHHHHHHHhCCCCc
Confidence 9987654 347999999999999997 4444 44 3558999999999999999999999889
Q ss_pred eeeecccccCCCCCCCcCCCCCCCCeeecCC---CHHHHHHHHhc
Q 020745 261 ALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKIIL 302 (322)
Q Consensus 261 ~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D---~p~~i~~KI~k 302 (322)
+.++.++||+|+| +|||||. +|+|||+| +|++|++||++
T Consensus 240 ~~l~~pll~~ldG--~KMSKS~-~naI~L~d~~tsp~~i~~ki~~ 281 (356)
T 2pid_A 240 FGITVPLITSTTG--AKLGKSA-GNAVWLNRDKTSPFELYQFFVR 281 (356)
T ss_dssp EEEEECCCC----------------CCBSSTTTSCHHHHHHHHHT
T ss_pred cccccccccCCCc--ccccCCC-CCeeeccCCCCCHHHHHHHHHc
Confidence 9999999999997 7999997 88999999 99999999999
No 21
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=100.00 E-value=5.8e-51 Score=402.46 Aligned_cols=227 Identities=19% Similarity=0.226 Sum_probs=189.2
Q ss_pred chhhhhcCc--eeecCCHHHHHHHHHhCCceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccC
Q 020745 58 PHVFLRRGV--FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135 (322)
Q Consensus 58 ~~~l~~Rgi--~~~~~d~~~ll~~~~~~~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~ 135 (322)
.+.+++||+ +++|++++++| ++++++++|+||+|||++|||||+++++.++|||++ |+.++++|||+|+++.++
T Consensus 11 ~~~li~Rg~~e~~~~~~L~~~L---~~~~~~~vy~G~dPTg~sLHlGh~v~l~~l~~lQ~~-G~~~i~lIgD~ta~igdp 86 (432)
T 1h3f_A 11 ALALLKRGAEEIVPEEELLAKL---KEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQEL-GHKVVLIIGDFTGMIGDP 86 (432)
T ss_dssp HHHHHHTTCSEEETHHHHHHHH---HTCSCCEEEEEECTTCCSCBHHHHHHHHHHHHHHHT-TCEEEEEECCCC------
T ss_pred HHHHHHcchHHhCCHHHHHHHH---hcCCCcEEEEcccCCCCCCchhhHHHHHHHHHHHHC-CCCEEEEEccceEEecCC
Confidence 478899999 56666666555 467899999999999988999999999999999997 788999999999977543
Q ss_pred ---------CCHHHHHHHHHHHHHHHHHcCCC--CCceEEEecccccccccHHHHHHHHcccCHHHHHHhhCC------C
Q 020745 136 ---------LSVEESQRLARENAKDIIACGFD--VTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGF------T 198 (322)
Q Consensus 136 ---------~~~e~i~~~~~~~~~~iiA~G~d--p~kt~I~~ns~~~~~~~~~~~~~l~k~~t~~~~~~~~g~------~ 198 (322)
++.+++++|+.++.+.+. +|+| |+++.||+||+|.++..|..++++++++|+++|+++.++ .
T Consensus 87 sgk~~~R~~l~~e~i~~n~~~~~~ql~-~~ld~~p~k~~i~~nSd~~~~~~~~~~l~l~~~~tv~~ml~~~~~k~r~~~~ 165 (432)
T 1h3f_A 87 SGRSKTRPPLTLEETRENAKTYVAQAG-KILRQEPHLFELRYNSEWLEGLTFKEVVRLTSLMTVAQMLEREDFKKRYEAG 165 (432)
T ss_dssp ---------------HHHHHHHHHHHT-TTSCCCTTTEEEEETHHHHTTCBHHHHHHHHTTSBHHHHTTSHHHHHHHHTT
T ss_pred CCcccccccCCHHHHHHHHHHHHHHHH-HHhcCCCCceEEEECCcccccCcHHHHHHHhCcCcHHHHHhhhhHHHHhhcC
Confidence 568889988866665544 7888 999999999999988899999999999999999876543 3
Q ss_pred CCccccccchhhhhcCCCCCCCccccccCCCCcccccccccChhhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcC
Q 020745 199 GEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKM 278 (322)
Q Consensus 199 ~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KM 278 (322)
+++|+|+|+||+||||| ++.+++ +++|+|.||++|++++||+|+|+|..+++.+++++||+|+| .+||
T Consensus 166 ~~is~~ef~YPlLQaaD--------il~l~~---~l~~gG~DQ~~ni~l~rdlarr~~~~~~~~lt~pll~gldG-~~KM 233 (432)
T 1h3f_A 166 IPISLHELLYPFAQAYD--------SVAIRA---DVEMGGTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDG-REKM 233 (432)
T ss_dssp CCCBGGGGTHHHHHHHH--------HHHHTC---SEEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCCBCTTS-SSBC
T ss_pred CCCCccccchhhHHhhh--------hhhcCc---cEEEechHHHHHHHHHHHHHHHhCCCCceEeecccccCCCC-cccc
Confidence 67999999999999996 455554 67799999999999999999999988889999999999998 3599
Q ss_pred CCCCCCCeeecCCCHHHHHHHHhc
Q 020745 279 SASDPNSAIYVTDSAKAIKNKIIL 302 (322)
Q Consensus 279 SkS~p~~aI~L~D~p~~i~~KI~k 302 (322)
|||. +|+|||+|+|+++++||++
T Consensus 234 SKS~-~n~I~L~dsp~~i~~Ki~~ 256 (432)
T 1h3f_A 234 SKSL-DNYIGLTEPPEAMFKKLMR 256 (432)
T ss_dssp CGGG-TCCCBTTSCHHHHHHHHHT
T ss_pred CcCC-CCeeCCCCCHHHHHHHHhC
Confidence 9999 6799999999999999999
No 22
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognit domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=100.00 E-value=1.4e-50 Score=393.78 Aligned_cols=233 Identities=20% Similarity=0.261 Sum_probs=191.9
Q ss_pred chhhhhcCc--eeecCCHHHHHHHHHhCCceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccC
Q 020745 58 PHVFLRRGV--FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN 135 (322)
Q Consensus 58 ~~~l~~Rgi--~~~~~d~~~ll~~~~~~~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~ 135 (322)
...|++||+ ++++++++++|+ + +++++|+||+||| +|||||++++++++++|++ |+.++++|||+|+++.+.
T Consensus 10 ~~~l~~Rg~~e~~~~~~L~~~L~---~-~~~~vy~G~~PTG-~lHlG~~~~~l~~~~~~q~-g~~~i~~I~D~ha~t~~~ 83 (372)
T 1n3l_A 10 KLHLITRNLQEVLGEEKLKEILK---E-RELKIYWGTATTG-KPHVAYFVPMSKIADFLKA-GCEVTILFADLHAYLDNM 83 (372)
T ss_dssp HHHHHHTTCSEEECHHHHHHHHT---T-SCCEEEEEECCSS-CCBGGGHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTT
T ss_pred HHHHHHcCCeeecCHHHHHHHHh---c-CCCEEEeCcCCCC-cccHHHHHHHHHHHHHHHC-CCCEEEEEcCCceeeCCC
Confidence 367899998 677777776665 3 6789999999999 9999999999999998885 889999999999987655
Q ss_pred CCHHHHHHHH---HHH-HHH-HHHcCCCCCceEEEecccc-cccccHHHHHHHHcccCHHHHHHh----hCCCCCccccc
Q 020745 136 LSVEESQRLA---REN-AKD-IIACGFDVTKTFIFSDFDY-VGGAFYKNMVKVAKCVTYNKVVGI----FGFTGEDHIGK 205 (322)
Q Consensus 136 ~~~e~i~~~~---~~~-~~~-iiA~G~dp~kt~I~~ns~~-~~~~~~~~~~~l~k~~t~~~~~~~----~g~~~~~s~~~ 205 (322)
.+.+++.++. .++ +.. ++|+|+||+++.||.||+| ....++.+++++++++|+++++++ .++.+++++|+
T Consensus 84 ~~~~~l~~~~~~~~~~~i~~~lla~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~~~~~~~~v~~~~~~~~~g~ 163 (372)
T 1n3l_A 84 KAPWELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSKEYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSG 163 (372)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHTCCCTTEEEEEGGGTTTSHHHHHHHHHHHTTSCHHHHHHHTTTTSCCCSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHcCCChhhcEEEECCeecccHHHHHHHHHHHhhCcHHHHHhchhhhhcccCCCccee
Confidence 4555554443 333 444 5899999999999999999 445678888999999999999986 35567899999
Q ss_pred cchhhhhcCCCCCCCccccccCCCCcccccccccChhhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCC
Q 020745 206 VSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNS 285 (322)
Q Consensus 206 ~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~ 285 (322)
|+||+||||| ++.+++ ++||+|.||++|++++||+++|+++.+|..++.++||+|+| +|||||.+++
T Consensus 164 ~~YP~lQaaD--------il~~~a---~~v~~G~DQ~~~~~l~rdl~~r~~~~~p~~l~~pll~gldG--~KMSKS~~ns 230 (372)
T 1n3l_A 164 LLYPGLQALD--------EEYLKV---DAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLTG--SKMSSSEEES 230 (372)
T ss_dssp HHHHHHHHHH--------HHHTTC---SEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCCCSSC--C-------CC
T ss_pred eecchHhhcc--------HHHhcC---CEEEcChhHHHHHHHHHHHHHHcCCCCCEEEecCccCCCCc--ccccCCCCCC
Confidence 9999999996 455665 67799999999999999999999999999999999999997 7999999777
Q ss_pred eeecCCCHHHHHHHHhccCccCCCc
Q 020745 286 AIYVTDSAKAIKNKIILLKCADKQV 310 (322)
Q Consensus 286 aI~L~D~p~~i~~KI~k~a~t~~~~ 310 (322)
+|||+|+|++|++|||+ |+||+..
T Consensus 231 ~I~L~d~p~~i~kKi~~-A~td~~~ 254 (372)
T 1n3l_A 231 KIDLLDRKEDVKKKLKK-AFCEPGN 254 (372)
T ss_dssp SCBTTCCHHHHHHHHHT-CCCCTTC
T ss_pred eEeccCCHHHHHHHHHH-ccCCCCC
Confidence 99999999999999999 7777754
No 23
>1jil_A Tyrrs, tyrosyl-tRNA synthetase; truncation, based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=100.00 E-value=4.9e-50 Score=394.94 Aligned_cols=230 Identities=18% Similarity=0.268 Sum_probs=201.4
Q ss_pred hhhhhcCceeecCCHHHHHHHHHhCCceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccc-----
Q 020745 59 HVFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMW----- 133 (322)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~----- 133 (322)
..|++||++++|++.++|.+.+++ +++++|+||+|||+||||||+++++.++|||++ |+.++++|||.|+.+.
T Consensus 7 ~~l~~Rg~~~~~~~~~~L~~~L~~-~~~~iy~G~dPTg~sLHlGh~v~l~~~~~lQ~~-G~~~~~lIgd~ta~igdp~gk 84 (420)
T 1jil_A 7 EDLKWRGLIYQQTDEQGIEDLLNK-EQVTLYCGADPTADSLHIGHLLPFLTLRRFQEH-GHRPIVLIGGGTGMIGDPSGK 84 (420)
T ss_dssp HHHHHTTCCCCBSCHHHHHHHHHH-SCCEEEEEECCSSSSCBHHHHHHHHHHHHHHHT-TCEEEEEECTTGGGTCCCTTC
T ss_pred HHHHHcCchhhcCCHHHHHHHHcC-CCCEEEEeeCCCCCCccHHHHHHHHHHHHHHHC-CCcEEEEEcCceeEecCCCcc
Confidence 578999999999998888777764 689999999999988999999999999999997 7788888999887654
Q ss_pred ---cC-CCHHHHHHHHHHHHHHHHHcCCCC---CceEEEecccccccccHHHHHH-HHcccCHHHHHHhhCC----CCCc
Q 020745 134 ---KN-LSVEESQRLARENAKDIIACGFDV---TKTFIFSDFDYVGGAFYKNMVK-VAKCVTYNKVVGIFGF----TGED 201 (322)
Q Consensus 134 ---r~-~~~e~i~~~~~~~~~~iiA~G~dp---~kt~I~~ns~~~~~~~~~~~~~-l~k~~t~~~~~~~~g~----~~~~ 201 (322)
|+ ++.+++++|+.++.++++++ +|| +++.|++|++|+.+..+.++++ +++++|+++|+++..+ .+++
T Consensus 85 ~~~R~~l~~e~i~~n~~~~~~~~~~~-ld~~~~~k~~i~~ns~w~~~~~~l~~l~~~~~~~tv~~m~~~~~~k~r~~~~i 163 (420)
T 1jil_A 85 SEERVLQTEEQVDKNIEGISKQMHNI-FEFGTDHGAVLVNNRDWLGQISLISFLRDYGKHVGVNYMLGKDSIQSRLEHGI 163 (420)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHHHHHH-SCCSSSSSCEEEETHHHHTTCCHHHHHHHTGGGCCHHHHHTCGGGHHHHTTTC
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHH-hCCCCCCceEEEEchhhhhhccHHHHHHHHhccccHHHHhcchhhhhhccCCc
Confidence 33 59999999999999999988 888 9999999999987767777776 9999999999988665 4689
Q ss_pred cccccchhhhhcCCCCCCCccccccCCCCcccc-cccccChhhHHHHHHHHHHHh-CCCCceeeecccccCCCCCCCcCC
Q 020745 202 HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCL-IPCAIDQDPYFRMTRDVAPRI-GYHKPALIESSFFPALQGETGKMS 279 (322)
Q Consensus 202 s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~l-vp~G~DQd~~~~ltrdla~k~-~~~kp~~l~~~~lp~L~G~~~KMS 279 (322)
|+|+|+||+|||||+ +.+..+++|. +|+|.||+||++++||+|+|+ |..+|+.+++++||+++| +|||
T Consensus 164 s~~ef~YplLQaaD~--------l~l~~~~~~~i~~gG~DQ~~ni~~grdla~r~~~~~~~~~l~~pll~~ldG--~KMS 233 (420)
T 1jil_A 164 SYTEFTYTILQAIDF--------GHLNRELNCKIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDG--KKFG 233 (420)
T ss_dssp CHHHHHHHHHHHHHH--------HHHHHHHCEEEEEEEGGGHHHHHHHHHHHHHHHCCCCCEEEEECCCBCTTS--CBTT
T ss_pred chHHHHHHHHHHHHH--------HHHhccCCCcEEeccHHHHHHHHHHHHHHHHhcCCCCeeEeecccccCCcc--cccc
Confidence 999999999999974 3341122354 469999999999999999999 988899999999999998 7999
Q ss_pred CCCCCCeeecCC---CHHHHHHHHhc
Q 020745 280 ASDPNSAIYVTD---SAKAIKNKIIL 302 (322)
Q Consensus 280 kS~p~~aI~L~D---~p~~i~~KI~k 302 (322)
||. +|+|||+| +|+++++||++
T Consensus 234 KS~-~naI~L~d~~tsp~~i~~ki~~ 258 (420)
T 1jil_A 234 KSE-SGAVWLDAEKTSPYEFYQFWIN 258 (420)
T ss_dssp BCS-SSBCBSSTTTSCHHHHHHHHHT
T ss_pred CCC-CCeEecCCCCCCHHHHHHHHhc
Confidence 999 78999999 99999999999
No 24
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=100.00 E-value=1.1e-50 Score=387.41 Aligned_cols=214 Identities=17% Similarity=0.182 Sum_probs=182.8
Q ss_pred ceEEEEeeccCCCCcchhhhHH-HHHHHHHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 020745 85 KFYLYTGRGPSSEALHLGHLVP-FMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (322)
Q Consensus 85 ~~~vytG~~PSg~slHlGhli~-~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~ 163 (322)
..++|+||+||| +|||||+++ +...++||+ |+.++++|||+|+++.. .+++++++++++++++|+|+|+||+++.
T Consensus 3 ~~~vysG~~PTg-~lHlG~~lg~l~~~~~lQ~--g~~~~~~iaD~ha~~~~-~~~~~l~~~~~~~~~~~lA~Gldp~k~~ 78 (322)
T 3tzl_A 3 AMRVLTGLQPSG-DLHIGNYFGAIKQMVDAQE--KSQMFMFIANYHAMTSS-QDGEKLKQNSLKAAAAFLSLGIDPQKSV 78 (322)
T ss_dssp -CCBEEEECCSS-CCBHHHHHHTHHHHHHTTT--TSCCEEEECHHHHTTTC-CCHHHHHHHHHHHHHHHHHTTCCTTTSE
T ss_pred ceEEEEccCCCc-cccHHHHHHHHHHHHHHhc--CCCEEEEEecCeeecCC-CCHHHHHHHHHHHHHHHHHcCCCccceE
Confidence 457999999999 899999996 557788998 77889999999997754 6899999999999999999999999999
Q ss_pred EEecccccccccHHHHHHHHcccCHHHHHH------hhCCCCCccccccchhhhhcCCCCCCCccccccCCCCccccccc
Q 020745 164 IFSDFDYVGGAFYKNMVKVAKCVTYNKVVG------IFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237 (322)
Q Consensus 164 I~~ns~~~~~~~~~~~~~l~k~~t~~~~~~------~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~ 237 (322)
||.||+|.+ .....+.++++++++++.+ ++++.+++|+|+|+||+||||| ++.+++ |+|||
T Consensus 79 i~~qS~~~~--~~el~~~l~~~~~~~~l~r~~~~K~~~~~~~~~~~g~f~YP~LQAaD--------il~~~~---~~vpv 145 (322)
T 3tzl_A 79 FWLQSDVKE--VMELYWILSQFTPMGLLERAHSYKDKVAKGLSASHGLFSYPVLMAAD--------ILLFDT---RIVPV 145 (322)
T ss_dssp EEEGGGCTH--HHHHHHHHGGGCBHHHHHSCHHHHHHHHTTCCCBHHHHHHHHHHHHH--------HHHTTC---SEEEC
T ss_pred EEECCcchh--HHHHHHHHhccCcHHHHHhhhHHHHHHccCCCCchHHHHHHHHHHHH--------HHHhCC---cEEEe
Confidence 999999974 3444556899999998754 3455578999999999999996 555665 88999
Q ss_pred ccChhhHHHHHHHHHHHhCC------CCceeee---cccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhccCccCC
Q 020745 238 AIDQDPYFRMTRDVAPRIGY------HKPALIE---SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADK 308 (322)
Q Consensus 238 G~DQd~~~~ltrdla~k~~~------~kp~~l~---~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t~~ 308 (322)
|.||+||+++|||+|+|+|. ++|..++ +++||+|+| +|||||. +|+|||+|+|++|++|||+ |+||+
T Consensus 146 G~DQ~~hi~l~Rdia~r~n~~~g~~f~~P~~~~~~~~~~l~~l~G--~KMSKS~-~n~I~L~d~p~~i~~KI~~-a~td~ 221 (322)
T 3tzl_A 146 GKDQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDG--AKMSKSY-QNTIDIFSSEKTLKKQISS-IVTDS 221 (322)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHCSCSCCCEEECCCSSCCCBCTTS--SBCCGGG-TCCCBSSCCHHHHHHHHHT-CCCCC
T ss_pred ccchHHHHHHHHHHHHHhcccccCCCCCchhhhccccccccCCCC--CcCCCCC-CCceecCCCHHHHHHHHHh-ccCCC
Confidence 99999999999999999986 4565554 789999998 8999999 5799999999999999999 88888
Q ss_pred CccccccCCCCCC
Q 020745 309 QVCIFWRTRKCGI 321 (322)
Q Consensus 309 ~~~~~~~~~~~~~ 321 (322)
... ++|++|++
T Consensus 222 ~~~--~~~~~~~~ 232 (322)
T 3tzl_A 222 TAL--EDPKDHEN 232 (322)
T ss_dssp CCT--TSCCCGGG
T ss_pred ccc--cCCCCCcc
Confidence 765 35556553
No 25
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3qe4_A* 3d6u_A* 3d6v_A* 1u7x_A 3n2y_A* 2hgz_A*
Probab=100.00 E-value=2e-49 Score=377.74 Aligned_cols=225 Identities=20% Similarity=0.254 Sum_probs=192.8
Q ss_pred hhhhcCceeecCCHHHHHHHHHhCCceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccCCCHH
Q 020745 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVE 139 (322)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e 139 (322)
.+++||+ ..+.+.++|.+.++ ++++++|+||+||| +|||||+++++.++|||++ |+.++++|||+|+++.+..+++
T Consensus 5 ~l~~r~~-~e~~~~~~l~~~L~-~~~~~vy~G~~PTg-~lHlGhl~~l~~~~~lQ~~-g~~~~~~i~D~~a~~~~~~~~e 80 (314)
T 2zp1_A 5 EMIKRNT-SEIISEEELREVLK-KDEKSAYIGFEPSG-KIHLGHYLQIKKMIDLQNA-GFDIIILLADLAAYLNQKGELD 80 (314)
T ss_dssp HHHHTTC-SEEETHHHHHHHHT-SSSEEEEEEECCCS-SCBHHHHHHHHHHHHHHHT-TEEEEEEECHHHHHHTTCCCHH
T ss_pred HHHHcCC-eecCCHHHHHHHHc-CCCCEEEEccCCCC-CcchhhHHHHHHHHHHHHC-CCCEEEEEecceEecCCCCCHH
Confidence 5688995 34444445544455 68999999999999 8999999999999999997 8899999999999876657999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCceEEEeccccccc-ccHHHHHHHHcccCHHHHHHhh---CCC-CCccccccchhhhhcC
Q 020745 140 ESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG-AFYKNMVKVAKCVTYNKVVGIF---GFT-GEDHIGKVSFPPVQAV 214 (322)
Q Consensus 140 ~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~~-~~~~~~~~l~k~~t~~~~~~~~---g~~-~~~s~~~~~YP~lQaa 214 (322)
++++++.+++++|+|+|+| +.++.||+|..+ .+|..+.++++++|+++|+++. ++. +..|+|+|+||+||||
T Consensus 81 ~i~~~~~~~~~~~~a~G~d---~~~~~qs~~~~~~~~~~~~~~l~~~~t~~~l~~~~~~~~~~~~~~~~g~~~YP~LQaa 157 (314)
T 2zp1_A 81 EIRKIGDYNKKVFEAMGLK---AKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVN 157 (314)
T ss_dssp HHHHHHHHHHHHHHHTTCC---CEEEEGGGTTTSHHHHHHHHHHHHHSCHHHHHHHTTTTSCCCSSCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCC---eEEEECChhhcchHHHHHHHHHHCcCcHHHHhccchhhhhccCCCCchhhhhHHHHHH
Confidence 9999999999999999998 778889999765 4688888899999999999874 332 2249999999999999
Q ss_pred CCCCCCccccccCCCCcccccccccChhhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCCCHH
Q 020745 215 PSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAK 294 (322)
Q Consensus 215 d~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~ 294 (322)
| ++.+++ +++|+|.||+||++++|++++ ++|..+++++||+|+| .+||||| ++|+|||+|+|+
T Consensus 158 D--------il~~~~---~~v~~G~DQ~~~~~l~R~i~~----~~~~~~~~~~l~~l~G-~~KMSKS-~~~~I~L~d~~~ 220 (314)
T 2zp1_A 158 T--------SHYLGV---DVAVGGMEQRKIHMLARELLP----KKVVCIHNPVLTGLDG-EGKMSSS-KGNFIAVDDSPE 220 (314)
T ss_dssp H--------HHHHTC---SEEEEEGGGHHHHHHHHHHSS----SCCEEEEECCCBCTTS-SSBCCTT-TTCSCBTTCCHH
T ss_pred h--------HHhhCC---CEEEcChhHHHHHHHHHHhcC----CCcEEeeccccccCCc-ccccCCC-CcceecCCCCHH
Confidence 6 455565 678999999999999999987 6899999999999996 4799999 599999999999
Q ss_pred HHHHHHhccCccCCC
Q 020745 295 AIKNKIILLKCADKQ 309 (322)
Q Consensus 295 ~i~~KI~k~a~t~~~ 309 (322)
+|++|||+ |+||++
T Consensus 221 ~i~~KI~~-a~td~~ 234 (314)
T 2zp1_A 221 EIRAKIKK-AYCPAG 234 (314)
T ss_dssp HHHHHHHH-SCCCTT
T ss_pred HHHHHHHh-CCCCCC
Confidence 99999999 777765
No 26
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural GEN NPPSFA; 2.50A {Thermus thermophilus}
Probab=100.00 E-value=1.2e-49 Score=382.45 Aligned_cols=218 Identities=18% Similarity=0.162 Sum_probs=176.1
Q ss_pred EEEEeeccCCCCcchhhhHHHH-HHHHHHHhCC-ceEEEEeeCcccccccC-CCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 020745 87 YLYTGRGPSSEALHLGHLVPFM-FTKYLQDAFK-VPLVIQLTDDEKCMWKN-LSVEESQRLARENAKDIIACGFDVTKTF 163 (322)
Q Consensus 87 ~vytG~~PSg~slHlGhli~~~-~~~~lQ~~~g-~~v~I~IaD~~~~l~r~-~~~e~i~~~~~~~~~~iiA~G~dp~kt~ 163 (322)
++|+||+||| +|||||+++++ ...+||++ | +.++++|||+|+++.++ .+++++++++++++++|+|+|+||+++.
T Consensus 3 ~vy~G~~PTg-~lHlGh~~g~l~~~~~lQ~~-G~~~~~~~IaD~~a~~~~~~~~~~~i~~~~~~~~~~~la~Gldp~k~~ 80 (337)
T 2el7_A 3 RVLSGIQPSG-EIHIGNYLGAIKQWVAIGEK-LGRDAFFCIVDYHALTNPLAYDPSTLAQRTFEAALVNIAAGLDPEKVT 80 (337)
T ss_dssp CEEEEECSCS-CCBHHHHHTHHHHHHHHHHH-HGGGEEEEECGGGGGGSTTTSCHHHHHHHHHHHHHHHHHHTCCTTTSE
T ss_pred EEEEeeCCCC-cccHHHHHHHHHHHHHHHhc-CCCCEEEEEeCceeecCCCCCCHHHHHHHHHHHHHHHHHhCCChhheE
Confidence 6999999999 79999999875 44458997 5 77899999999977653 7899999999999999999999999999
Q ss_pred EEecccccccccHHHHHHHHcccCHHHHHHhh------CCCCCccccccchhhhhcCCCCCCCccccccCCCCccccccc
Q 020745 164 IFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIF------GFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237 (322)
Q Consensus 164 I~~ns~~~~~~~~~~~~~l~k~~t~~~~~~~~------g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~ 237 (322)
||+||+|++ +......+++.+++++|.+.. ...+++|+|+|+||+||||| ++.+++ |+||+
T Consensus 81 i~~qS~~~~--~~el~~~l~~~~~~~~l~r~~~~k~r~~~~~~~~~g~f~YPvLQaaD--------il~~~~---~lvp~ 147 (337)
T 2el7_A 81 LFVQSHVPE--HTELSWVFTTLTPLGDLTRMTQFKDKASKQETVWSGLLMYPVLQAAD--------ILIYKA---DTVPV 147 (337)
T ss_dssp EEEGGGSTH--HHHHHHHHHHTSBHHHHHTSHHHHHHTTSSSCCBHHHHHHHHHHHHH--------HHHTTC---CEEEC
T ss_pred EEEcCcchh--hHHHHHHHHccCCHHHHHHhHHHHHHhccCCCCChHHHHhHHHHHhh--------HHhhCC---cEEEc
Confidence 999999974 333344588888888887753 23468999999999999996 455665 78899
Q ss_pred ccChhhHHHHHHHHHHHhC------CCCceeeec---ccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhccCccCC
Q 020745 238 AIDQDPYFRMTRDVAPRIG------YHKPALIES---SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADK 308 (322)
Q Consensus 238 G~DQd~~~~ltrdla~k~~------~~kp~~l~~---~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t~~ 308 (322)
|.||+||++++||+|+|+| +++|..+++ ++||+|+| .+|||||.+ |+|||+|+|++|++||++ +++++
T Consensus 148 G~DQ~~~i~l~rdla~r~n~~~g~~f~~P~~~~~~~~p~l~gldG-~~KMSKS~~-n~I~L~d~p~~i~~Ki~~-a~td~ 224 (337)
T 2el7_A 148 GEDQVQHIELTREIARRFNHLFGETFPEPQALLNPEAPRVPGIDG-KAKMSKSLG-NTIGLLEPEESIWQKIQH-LPDDP 224 (337)
T ss_dssp CGGGCHHHHHHHHHHHHHHHHHSSCCCCCEEECCTTSCCCBCTTS-SSBCCTTTT-CCCBSSSCHHHHHHHHHT-CCCCC
T ss_pred ccchHHHHHHHHHHHHHHHhhcCcccCCCeeecccccccccCCCC-ccccCCCCC-CeeeCcCCHHHHHHHHHh-CCCCC
Confidence 9999999999999999985 467877775 89999998 589999994 699999999999999999 88888
Q ss_pred CccccccCCCCCCC
Q 020745 309 QVCIFWRTRKCGIT 322 (322)
Q Consensus 309 ~~~~~~~~~~~~~~ 322 (322)
+.++.++|++|+++
T Consensus 225 ~~~~~~~~~~p~~~ 238 (337)
T 2el7_A 225 QRIRLSDPGDPERT 238 (337)
T ss_dssp -------------C
T ss_pred ccccccCCCCCchh
Confidence 88899999988874
No 27
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI, ligase; HET: TRP; 2.50A {Thermotoga maritima}
Probab=100.00 E-value=3e-50 Score=386.96 Aligned_cols=219 Identities=21% Similarity=0.257 Sum_probs=187.4
Q ss_pred ceEEEEeeccCCCCcchhhhHHHH-HHHHHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 020745 85 KFYLYTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (322)
Q Consensus 85 ~~~vytG~~PSg~slHlGhli~~~-~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~ 163 (322)
.+++|+|++||| +|||||+++++ ..++||++ |+.++++|||+|+++.+..+++++++++++++++|+|+|+||+++.
T Consensus 12 ~~~v~~G~~PTG-~lHLGn~~g~l~~~~~lQ~~-G~~~~~~IaD~ha~t~~~~dp~~~~~~~~~~~~~~lA~Gldp~k~~ 89 (340)
T 2g36_A 12 HMRILSGMRPTG-KLHIGHLVGALENWVKLQEE-GNECFYFVADWHALTTHYDDVSKLKEYTRDLVRGFLACGIDPEKSV 89 (340)
T ss_dssp CCEEEEEECCCS-SCBHHHHHTHHHHHHHHHHT-TCEEEEEECHHHHHHHHTTCCTTHHHHHHHHHHHHHHTTCCTTTSE
T ss_pred CCeEEEeeCCCC-cccHHhHHHHHHHHHHHHHC-CCCEEEEEecceeecCCCCCHHHHHHHHHHHHHHHHHhCCChhHeE
Confidence 578999999999 99999999876 55669997 7888999999999776557888899999999999999999999999
Q ss_pred EEecccccccccHHHHHHHHcccCHHHHHHhhC---------CCCCccccccchhhhhcCCCCCCCccccccCCCCcccc
Q 020745 164 IFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFG---------FTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCL 234 (322)
Q Consensus 164 I~~ns~~~~~~~~~~~~~l~k~~t~~~~~~~~g---------~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~l 234 (322)
||.||+|++ +....+.+++.+|++++.+... ..+++|+|+|+||+||||| ++.+++ |+
T Consensus 90 if~qS~~~~--~~el~~~l~~~~~v~~l~r~~~~k~~~~r~~~~~~~~~g~f~YPvLQAaD--------il~~~~---~~ 156 (340)
T 2g36_A 90 IFVQSGVKE--HAELALLFSMIVSVSRLERVPTYKEIKSELNYKDLSTAGFLIYPVLQAAD--------ILIYKA---EG 156 (340)
T ss_dssp EEEGGGCTH--HHHHHHHHHTTSCHHHHHTCHHHHTC-------CCCSHHHHTHHHHHHHH--------HHTTTC---SE
T ss_pred EEECCchHH--HHHHHHHHHccCCHHHHHHhHHHHhHHHHhccCCCCChHHhhhHHHHHhh--------HHHhCC---CE
Confidence 999999964 4444556899999999876532 2347899999999999996 455665 88
Q ss_pred cccccChhhHHHHHHHHHHHhCC------CCceee--ecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhccCcc
Q 020745 235 IPCAIDQDPYFRMTRDVAPRIGY------HKPALI--ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCA 306 (322)
Q Consensus 235 vp~G~DQd~~~~ltrdla~k~~~------~kp~~l--~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t 306 (322)
||+|.||+||++++||+|+|+|. ++|..+ ++++||+|+| +|||||. +|+|||+|+|++|++||++ |+|
T Consensus 157 vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~gldG--~KMSKS~-~n~I~L~dsp~~i~~Ki~~-a~t 232 (340)
T 2g36_A 157 VPVGEDQVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKLPGTDG--RKMSKSY-GNIINLEISEKELEQTILR-MMT 232 (340)
T ss_dssp EEECGGGHHHHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCCCCTTS--SCCCGGG-TCCCBTTCCHHHHHHHHHT-CCC
T ss_pred EEcccchHHHHHHHHHHHHHhhhhcccccCCchhhhccccccCCCCc--cccCCCC-CCeEeeeCCHHHHHHHHHh-CCC
Confidence 99999999999999999999873 467643 4799999997 5999999 5799999999999999999 888
Q ss_pred CCCccccccCCCCCCC
Q 020745 307 DKQVCIFWRTRKCGIT 322 (322)
Q Consensus 307 ~~~~~~~~~~~~~~~~ 322 (322)
++++.+.++|++|+++
T Consensus 233 d~~~~~~~~~~~p~~~ 248 (340)
T 2g36_A 233 DPARVRRSDPGNPENC 248 (340)
T ss_dssp CTTCSSTTSCCCGGGC
T ss_pred CcccccccCCCCCchh
Confidence 8888888999888864
No 28
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae}
Probab=100.00 E-value=3.5e-50 Score=387.61 Aligned_cols=219 Identities=21% Similarity=0.258 Sum_probs=180.7
Q ss_pred CceEEEEeeccCCCCcchhhhHHHHHHHH--HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCc
Q 020745 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTK 161 (322)
Q Consensus 84 ~~~~vytG~~PSg~slHlGhli~~~~~~~--lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~k 161 (322)
.++++|+||+||| +|||||+++++ .+| ||+ ++.++++|||+|+++.+ .+++++++++++++++|+|+|+||++
T Consensus 3 ~~~~i~sG~~PTG-~lHLGn~vg~l-~~~~~lQ~--~~~~~~~IaD~ha~~~~-~d~~~i~~~~~~~~~~~lA~Gldp~k 77 (348)
T 2yy5_A 3 MMKRALTGIQASG-KQHLGNYLGVM-QSLIELQE--QCQLFVFVADLHSITVD-FQPQALKQNNFDLVRTLLAVGLDPQK 77 (348)
T ss_dssp -CCEEEEEECCCT-TCBHHHHHHTG-GGHHHHHH--HSEEEEEECHHHHTTSC-CCHHHHHHHHHHHHHHHHHTTCCTTT
T ss_pred CCeEEEEeeCCCC-cccHHHHHHHH-HHHHHHHh--CCcEEEEEcChhhccCC-CCHHHHHHHHHHHHHHHHHhCCChhH
Confidence 3578999999998 99999999886 666 998 56789999999997765 89999999999999999999999999
Q ss_pred eEEEecccccccccHHHHHHHHcccCHHHHHHh---------hCC----CCCccccccchhhhhcCCCCCCCccccccCC
Q 020745 162 TFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGI---------FGF----TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGK 228 (322)
Q Consensus 162 t~I~~ns~~~~~~~~~~~~~l~k~~t~~~~~~~---------~g~----~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~ 228 (322)
+.||.||+|+++ ....+.++...+++++.+. .+| .+++++|+|+||+||||| ++.++
T Consensus 78 ~~if~qS~~~~~--~el~w~l~~~~~~~~l~R~~~~k~~~~~~~~~~~~~~~~~~g~~~YPvLQaaD--------il~~~ 147 (348)
T 2yy5_A 78 ACLFLQSDLLEH--SMMGYLMMVQSNLGELQRMTQFKAKKAEQTRNPNGTLNIPTGLLTYPALMAGD--------ILLYQ 147 (348)
T ss_dssp EEEEEGGGCHHH--HHHHHHHHHHSBHHHHHHCHHHHTTC-----------CCBTHHHHHHHHHHHH--------HHTTC
T ss_pred eEEEECCcccch--hHHHHHHHhhccHHHHhchHHHHHHHHhhccccccCCCCChhhhhhHHHHHHH--------HHHhC
Confidence 999999999752 2222223444455544442 111 457999999999999996 55566
Q ss_pred CCcccccccccChhhHHHHHHHHHHHhC------CCCceeee---cccccCCCCCCCcCCCCCCCC--eeecCCCHHHHH
Q 020745 229 DHLRCLIPCAIDQDPYFRMTRDVAPRIG------YHKPALIE---SSFFPALQGETGKMSASDPNS--AIYVTDSAKAIK 297 (322)
Q Consensus 229 ~~~~~lvp~G~DQd~~~~ltrdla~k~~------~~kp~~l~---~~~lp~L~G~~~KMSkS~p~~--aI~L~D~p~~i~ 297 (322)
+ |+||+|.||+||++++||+|+|+| +++|..++ +++||+|+|+.+|||||.+++ +|||+|+|++|+
T Consensus 148 a---~~vpvG~DQ~~~lel~Rdia~r~n~~yg~~f~~P~~l~~~~~~~l~gL~g~~~KMSKS~~n~~~~I~L~D~~~~i~ 224 (348)
T 2yy5_A 148 P---DIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQFVQNKDTNRIMDLFDPTKKMSKSSKNQNGVIYLDDPKEVVV 224 (348)
T ss_dssp C---SEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCCEEECCTTTTTCBCSSCTTSBCCSSCSCGGGCCBTTCCHHHHH
T ss_pred c---cEEEecccHHHHHHHHHHHHHHhhhhcccccCCCeeecccccccccCCCCcchhcCCCCCCCCceEeecCCHHHHH
Confidence 6 789999999999999999999997 56787777 699999999778999999653 999999999999
Q ss_pred HHHhccCccCCCccccccCC-CCCC
Q 020745 298 NKIILLKCADKQVCIFWRTR-KCGI 321 (322)
Q Consensus 298 ~KI~k~a~t~~~~~~~~~~~-~~~~ 321 (322)
+|||+ |+|++..++.++|+ +|++
T Consensus 225 ~KI~~-a~td~~~~~~~~~~~~p~v 248 (348)
T 2yy5_A 225 KKIRQ-ATTDSFNKIRFASKTQPGV 248 (348)
T ss_dssp HHHHT-CCCCSSCCCSCCTTTCHHH
T ss_pred HHHHh-CCCCCccccccCCCCCCch
Confidence 99999 88888888889987 6765
No 29
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A 3u1v_A
Probab=100.00 E-value=5.9e-50 Score=383.35 Aligned_cols=216 Identities=23% Similarity=0.326 Sum_probs=179.6
Q ss_pred eEEEEeeccCCCCcchhhhHHHHHHHH--HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE
Q 020745 86 FYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF 163 (322)
Q Consensus 86 ~~vytG~~PSg~slHlGhli~~~~~~~--lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~ 163 (322)
.++|+||+||| +|||||+++++ .+| ||+ |+.++++|||+|+++. +.+++++++++++++++|+|+|+||+++.
T Consensus 2 ~~vysG~~PTG-~lHlGn~vg~l-~~~~~lQ~--g~~~~~~IaD~ha~~~-~~~~e~i~~~~~~~~~~~la~Gldp~k~~ 76 (328)
T 1i6k_A 2 KTIFSGIQPSG-VITIGNYIGAL-RQFVELQH--EYNCYFCIVDQHAITV-WQDPHELRQNIRRLAALYLAVGIDPTQAT 76 (328)
T ss_dssp CEEEEEECCCS-CCBHHHHHHTH-HHHHHHTT--TSEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTEE
T ss_pred CEEEEeeCCCC-cccHHHHHHHH-HHHHHHHc--CCcEEEEEeCceeecC-CCCHHHHHHHHHHHHHHHHHhCCChhhcE
Confidence 37999999999 99999999886 555 687 6778999999999877 68999999999999999999999999999
Q ss_pred EEeccccccc--ccHH-H----HHHHHcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcccccc
Q 020745 164 IFSDFDYVGG--AFYK-N----MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIP 236 (322)
Q Consensus 164 I~~ns~~~~~--~~~~-~----~~~l~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp 236 (322)
||.||+|.++ ..|. . +.++.|+.++++..++ .+++++|+|+||+||||| ++.+++ ++||
T Consensus 77 if~qS~~~~~~~l~w~l~~~~~~~~l~r~~~~k~~~~~---~~~~~~g~f~YPvLQaaD--------il~~~~---~~vp 142 (328)
T 1i6k_A 77 LFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAG---KEAVSAGLLTYPPLMAAD--------ILLYNT---DIVP 142 (328)
T ss_dssp EEEGGGCTHHHHHHHHHHHHSCHHHHHTCHHHHHHHTT---CSSCCHHHHTHHHHHHHH--------HHTTTC---SEEE
T ss_pred EEecCchhhhhHHHHHHhccccHHHHHHHHHHHHHHhc---cCCCCchhhccHHHHHHH--------HHHhCC---CEEe
Confidence 9999999642 1121 1 2245555555443332 268999999999999996 555665 7889
Q ss_pred cccChhhHHHHHHHHHHHhC------CCCceeee---cccccCCCCCCCcCCCCCCCCe--eecCCCHHHHHHHHhccCc
Q 020745 237 CAIDQDPYFRMTRDVAPRIG------YHKPALIE---SSFFPALQGETGKMSASDPNSA--IYVTDSAKAIKNKIILLKC 305 (322)
Q Consensus 237 ~G~DQd~~~~ltrdla~k~~------~~kp~~l~---~~~lp~L~G~~~KMSkS~p~~a--I~L~D~p~~i~~KI~k~a~ 305 (322)
+|.||+||++++||+|+|+| ++.|..+. +++||+|+|+.+|||||.+|++ |||+|+|++|++|||+ |+
T Consensus 143 vG~DQ~~~iel~Rdia~r~n~~yg~~f~~P~~li~~~~~~l~gl~G~~~KMSKS~~n~~~~I~L~d~~~~i~~KI~~-a~ 221 (328)
T 1i6k_A 143 VGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKS-AV 221 (328)
T ss_dssp CCGGGHHHHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTSBCCTTCSCGGGCCBTTCCHHHHHHHHHH-CC
T ss_pred cccchHHHHHHHHHHHHHhCcccccccCCCeeeeccccccccCCCCCccCCCCCCCCcCceeeecCCHHHHHHHHHh-cC
Confidence 99999999999999999998 45676554 6999999997789999997647 9999999999999999 88
Q ss_pred cCCCccccccCC-CCCC
Q 020745 306 ADKQVCIFWRTR-KCGI 321 (322)
Q Consensus 306 t~~~~~~~~~~~-~~~~ 321 (322)
|++..++.|+|+ +|++
T Consensus 222 td~~~~~~~~~~~~p~v 238 (328)
T 1i6k_A 222 TDSEGTIRYDKEAKPGI 238 (328)
T ss_dssp CCSSCCCCCBTTTBHHH
T ss_pred CCCccccccCCCCCcch
Confidence 888888889887 6764
No 30
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis} SCOP: c.26.1.1
Probab=100.00 E-value=9.5e-50 Score=383.46 Aligned_cols=218 Identities=20% Similarity=0.298 Sum_probs=177.1
Q ss_pred ceEEEEeeccCCCCcchhhhHHHHHHHH--HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce
Q 020745 85 KFYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT 162 (322)
Q Consensus 85 ~~~vytG~~PSg~slHlGhli~~~~~~~--lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt 162 (322)
..++|+|++||| .|||||+++++ .+| ||+. +.++|+|||+|++++ ..+++++++++++++++|+|+|+||+|+
T Consensus 15 ~~~i~sG~~PTG-~lHLGh~vg~l-~~~~~lQ~~--~~~~~~iaD~hA~t~-~~~~~~~~~~~~~~~~~~lA~GlDp~k~ 89 (346)
T 3n9i_A 15 KPIVFSGAQPSG-ELTIGNYMGAL-RQWVQMQDD--YDCIYCIVDLHAITA-RQDPALLRKRTLDTLALYLACGIDPKKS 89 (346)
T ss_dssp CCEEEEEECSCS-CCBHHHHHHTH-HHHHTTTTT--SEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHHTCCTTTS
T ss_pred CCEEEECcCCCC-cccHHHHHHHH-HHHHHHHhh--CcEEEEEecceeecC-CCCHHHHHHHHHHHHHHHHHcCCCccce
Confidence 458999999999 69999999985 566 8974 678999999999876 4899999999999999999999999999
Q ss_pred EEEeccccccc--ccHHH-----HHHHHcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCccccc
Q 020745 163 FIFSDFDYVGG--AFYKN-----MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLI 235 (322)
Q Consensus 163 ~I~~ns~~~~~--~~~~~-----~~~l~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lv 235 (322)
+||.||+|.++ .+|.. +.++.|+.+++....+. .+++++|+|+||+||||| ++.+++ |+|
T Consensus 90 ~if~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~--~~~~~~g~~~YP~lQAaD--------il~~~a---d~v 156 (346)
T 3n9i_A 90 TIFVQSHVPEHSQLSWALNCYTYFGELSRMTQFKDKSARY--AENINAGLFDYPVLMAAD--------ILLYQT---NQV 156 (346)
T ss_dssp EEEEGGGCTHHHHHHHHHHTTSBHHHHHTCHHHHHHHHHS--GGGCBHHHHHHHHHHHHH--------HHTTTC---SEE
T ss_pred EEEeccccccchHHHHHHHHHhhHHHHHHHHHHHHHHhcc--CCCCCchhHHhHHHHHHH--------HHHhCc---eEE
Confidence 99999999754 23321 23455555554444332 257899999999999996 555666 889
Q ss_pred ccccChhhHHHHHHHHHHHhCC------CCceeee---cccccCCCCCCCcCCCCCCC--CeeecCCCHHHHHHHHhccC
Q 020745 236 PCAIDQDPYFRMTRDVAPRIGY------HKPALIE---SSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKIILLK 304 (322)
Q Consensus 236 p~G~DQd~~~~ltrdla~k~~~------~kp~~l~---~~~lp~L~G~~~KMSkS~p~--~aI~L~D~p~~i~~KI~k~a 304 (322)
|||.||+||+++|||+|+|+|. +.|..+. +++||||+++++|||||.|+ |+|||+|+|++|++|||+ |
T Consensus 157 pvG~DQ~~hleltRdia~rfn~~yg~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~k-A 235 (346)
T 3n9i_A 157 PVGEDQKQHLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKKMSKSDDNRNNVIELLEDPKSVVKKIKR-A 235 (346)
T ss_dssp CCCGGGHHHHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSBCCTTCSCGGGCCBTTSCHHHHHHHHHT-C
T ss_pred EeccchHHHHHHHHHHHHHhccccCCcccccchhccCCcccCccCCCCccccCCCCCCCCceecCCCCHHHHHHHHHh-C
Confidence 9999999999999999999983 3555444 37899996545799999975 899999999999999999 8
Q ss_pred ccCCCcc--ccccC-CCCCC
Q 020745 305 CADKQVC--IFWRT-RKCGI 321 (322)
Q Consensus 305 ~t~~~~~--~~~~~-~~~~~ 321 (322)
+||++.+ +.+++ ++|++
T Consensus 236 ~Td~~~~~~~~~~~~~~p~v 255 (346)
T 3n9i_A 236 MTDSDEPALIRYDVEKKAGV 255 (346)
T ss_dssp CCCCCSSCCCCCCTTTCHHH
T ss_pred cCCCCCCccccCCCCCCCCh
Confidence 8888763 55664 47765
No 31
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=100.00 E-value=3.9e-49 Score=380.69 Aligned_cols=219 Identities=25% Similarity=0.248 Sum_probs=182.9
Q ss_pred CCceEEEEeeccCCCCcchhhhHHHHHHHH--HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCC
Q 020745 83 GEKFYLYTGRGPSSEALHLGHLVPFMFTKY--LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVT 160 (322)
Q Consensus 83 ~~~~~vytG~~PSg~slHlGhli~~~~~~~--lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~ 160 (322)
++++++|+||+||| .|||||+++++ .+| ||++ +.++++|||+|+.+.++.+++++++++++++++|+|+|+||+
T Consensus 20 ~~~~~vysG~~PTG-~lHLGn~~g~l-~~~~~lQ~~--~~~~~~IaD~ha~~~~~~~~e~i~~~~~~~~~~~la~Gldp~ 95 (351)
T 1yi8_B 20 PARPRVLTGDRPTG-ALHLGHLAGSL-QNRVRLQDE--AELFVLLADVQALTDHFDRPEQVRENVLAVALDYLAAGLDPQ 95 (351)
T ss_dssp -CCSEEEEEECCSS-CCBHHHHHHTH-HHHHHHTSS--SEEEEEECHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCTT
T ss_pred CCCcEEEEeeCCCC-CccHHHHHHHH-HHHHHHHHh--CCeEEEEecchhhcCCCCCHHHHHHHHHHHHHHHHHhCCChh
Confidence 45789999999999 69999999985 667 9986 567889999999776569999999999999999999999999
Q ss_pred ceEEEecccccccccHHHHHHHHcccCHHHHH---------HhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCc
Q 020745 161 KTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVV---------GIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHL 231 (322)
Q Consensus 161 kt~I~~ns~~~~~~~~~~~~~l~k~~t~~~~~---------~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~ 231 (322)
++.||.||+|.+ +......++..+++++|. ++.||.+++|+|+|+||+||||| ++.+++
T Consensus 96 k~~i~~qS~~~~--~~el~~~l~~~~~v~~l~r~~~~k~~~~~~~f~~~~~~g~f~YPvLQAaD--------il~~~~-- 163 (351)
T 1yi8_B 96 KTTCVVQSAVPE--LAELTVYFLNLVTVSHLRQNPTVKAEIAQKGYGERVPAGFFVYPVSQAAD--------IAAFGA-- 163 (351)
T ss_dssp TEEEEEGGGCTH--HHHHHHHHHTTSBHHHHHTCHHHHHHHHHHTCTTCCBHHHHHHHHHHHHH--------HHHHTC--
T ss_pred hcEEEEcCchhh--HHHHHHHHhccCCHHHHHhhhHHHHHHhhcCCCCCCchHhhhhHHHHHhh--------HHhcCC--
Confidence 999999999974 222223355566666554 44566788999999999999996 455665
Q ss_pred ccccccccChhhHHHHHHHHHHHhC------CCCceeee--cccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhcc
Q 020745 232 RCLIPCAIDQDPYFRMTRDVAPRIG------YHKPALIE--SSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILL 303 (322)
Q Consensus 232 ~~lvp~G~DQd~~~~ltrdla~k~~------~~kp~~l~--~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k~ 303 (322)
++||+|.||+||++++||+|+|+| +++|..++ +++||+|+| .+|||||.+ |+|||+|+|++|++||++
T Consensus 164 -~~vpvG~DQ~~hi~l~rdia~r~n~~yg~~f~~P~~~~~~~~~l~~ldG-~~KMSKS~~-n~I~L~d~p~~i~~Ki~~- 239 (351)
T 1yi8_B 164 -TLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPGLDG-QAKMSKSLG-NAIALGDSADEVARKVMG- 239 (351)
T ss_dssp -SEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCCTTS-SSCCCTTTT-CCCBTTCCHHHHHHHHHT-
T ss_pred -CEEEecCCcHHHHHHHHHHHHHHHhhcccccCCCeeeeecCccccCCCC-ccccCCCCC-CeecCCCCHHHHHHHHHh-
Confidence 788999999999999999999986 35676543 789999987 359999994 699999999999999999
Q ss_pred CccCCCccccccCCCCCC
Q 020745 304 KCADKQVCIFWRTRKCGI 321 (322)
Q Consensus 304 a~t~~~~~~~~~~~~~~~ 321 (322)
|+||+...+.++|++|+.
T Consensus 240 a~td~~~~~~~~~~~~~~ 257 (351)
T 1yi8_B 240 MYTDPGHLRASDPGRVEG 257 (351)
T ss_dssp CCCCTTCCSTTSCCCCTT
T ss_pred cCCCcccccccCCCCCcc
Confidence 888888888899886643
No 32
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=1.6e-48 Score=403.80 Aligned_cols=235 Identities=20% Similarity=0.256 Sum_probs=198.9
Q ss_pred hhhhcCceeecCCHHHHHHHHHhCCceEEEEeeccCCCCcchhhhHHHH-HHHHHHHhCCceEEEEeeCcccccccC--C
Q 020745 60 VFLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPLVIQLTDDEKCMWKN--L 136 (322)
Q Consensus 60 ~l~~Rgi~~~~~d~~~ll~~~~~~~~~~vytG~~PSg~slHlGhli~~~-~~~~lQ~~~g~~v~I~IaD~~~~l~r~--~ 136 (322)
.+++||.... .+.++|.+.+++|+++++|+||+||| +|||||+++.. .+++||++ |+.++++|||+|+++.++ .
T Consensus 16 ~~~~~~~~e~-~~~~eL~~~L~~~~~~~vy~G~~PTg-~lHLG~~v~~~~~~~~lQ~~-G~~~~~lIaD~ha~~~d~~~~ 92 (690)
T 3p0j_A 16 KLLRSVGEEC-IQESELRNLIEKKPLIRCYDGFEPSG-RMHIAQGIFKAVNVNKCTAA-GCEFVFWVADWFALMNDKVGG 92 (690)
T ss_dssp HHHHHTCSEE-ECHHHHHHHHHHCTTEEEEEEECCCS-CCBHHHHHHHHHHHHHHHHT-TEEEEEEECCGGGGGGCTTTT
T ss_pred HHHhhCceee-cCHHHHHHHHhcCCCceEEeeecCCC-cchhHhhHHHHHHHHHHHHC-CCcEEEEEeeeEEEecCCCcc
Confidence 3577777543 34566777778888999999999999 89999977643 47789997 899999999999987653 7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccccc---ccHHHHHHHHcccCHHHHHHhh---CCC-CCccccccchh
Q 020745 137 SVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG---AFYKNMVKVAKCVTYNKVVGIF---GFT-GEDHIGKVSFP 209 (322)
Q Consensus 137 ~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~~~---~~~~~~~~l~k~~t~~~~~~~~---g~~-~~~s~~~~~YP 209 (322)
++++++++++++++.|+|+|+||+++.||.||+|... .+|..+.++++++|+++|+++. ++. .++++|+|+||
T Consensus 93 ~~e~i~~~~~~~~~~~lA~GlDp~k~~i~~qS~~v~~~~~l~~~~~~~i~~~~tv~~m~~~~~~~~r~~~~i~~g~f~YP 172 (690)
T 3p0j_A 93 ELEKIRIVGRYLIEVWKAAGMDMDKVLFLWSSEEITSHADTYWRMVLDIGRQNTIARIKKCCTIMGKTEGTLTAAQVLYP 172 (690)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCGGGEEEEEHHHHHTTSHHHHHHHHHHHHHTSCHHHHHTTC-------CCCCCSCSSHH
T ss_pred hHHHHHHHHHHHHHHHHHcCCChHHeEEEechHHHHhhHHHHHHHHHHHHhhCCHHHHHhhhhhhhhccCCCchhhHhhH
Confidence 8999999999999999999999999999999998542 4788888999999999999763 432 24899999999
Q ss_pred hhhcCCCCCCCccccccCCCCcccccccccChhhHHHHHHHHHHHhCCC-CceeeecccccCCCCCCCcCCCCCCCCeee
Q 020745 210 PVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPNSAIY 288 (322)
Q Consensus 210 ~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~~ltrdla~k~~~~-kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~ 288 (322)
+||||| ++.+++ +++|||.||+||++++||+|+|+|+. +|.++++++||+|+++.+|||||.++|+||
T Consensus 173 lLQAaD--------il~~~a---d~vpvG~DQ~~~l~l~Rdla~r~n~~~~p~~l~~~~l~gL~dG~~KMSKS~~~~~I~ 241 (690)
T 3p0j_A 173 LMQCCD--------IFFLKA---DICQLGLDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIF 241 (690)
T ss_dssp HHHHHH--------HHHTTC---SEECCBGGGHHHHHHHHHHHHHTTCCCCCEEEEBCCCCCSSTTCSSCBTTBGGGSCB
T ss_pred HHHHHH--------HHhhCC---CEEeccccHHHHHHHHHHHHHHhCCCCCceEeecCeeecCCCCCcCCCCCCCCCeee
Confidence 999996 556666 57899999999999999999999986 788889999999943247999999778999
Q ss_pred cCCCHHHHHHHHhccCccCCC
Q 020745 289 VTDSAKAIKNKIILLKCADKQ 309 (322)
Q Consensus 289 L~D~p~~i~~KI~k~a~t~~~ 309 (322)
|+|+|++|++|||+ |+||+.
T Consensus 242 L~D~p~~i~kKI~~-A~td~~ 261 (690)
T 3p0j_A 242 MEDTEEDVARKIRQ-AYCPRV 261 (690)
T ss_dssp TTCCHHHHHHHHHT-SCCCSS
T ss_pred ccCCHHHHHHHHHh-CcCCCc
Confidence 99999999999999 666543
No 33
>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, rossmann fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
Probab=100.00 E-value=1e-49 Score=382.93 Aligned_cols=218 Identities=20% Similarity=0.243 Sum_probs=178.9
Q ss_pred eEEEEeeccCCCCcchhhhHHHH-HHHHHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 020745 86 FYLYTGRGPSSEALHLGHLVPFM-FTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (322)
Q Consensus 86 ~~vytG~~PSg~slHlGhli~~~-~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I 164 (322)
.++|+|++||| .|||||+++++ ...+||+. +.++|+|||+|+++. ..+++++++++++++++|+|+|+||+|++|
T Consensus 7 ~~v~sG~~PTG-~lHLGhy~g~l~~~~~lQ~~--~~~~~~iaD~ha~~~-~~~~~~~~~~~~~~~~~~lA~GlDp~k~~i 82 (341)
T 3sz3_A 7 PIVLSGVQPSG-ELSIGNYLGALRQWQQMQDD--YDCQYCVVDLHAITV-RQDPQALHEATLDALAICLAVGVDPKKSTL 82 (341)
T ss_dssp CEEEEEECSSS-CCBHHHHHHTGGGHHHHHHH--SEEEEEECHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCCTTTSEE
T ss_pred CEEEeCcCCCC-cccHHHHHHHHHHHHHHHhc--CeEEEEEecceeEcC-CCCHHHHHHHHHHHHHHHHHcCCChhhcEE
Confidence 47999999999 79999999986 23349995 678999999999776 589999999999999999999999999999
Q ss_pred Eeccccccc--ccHH-----HHHHHHcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCccccccc
Q 020745 165 FSDFDYVGG--AFYK-----NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPC 237 (322)
Q Consensus 165 ~~ns~~~~~--~~~~-----~~~~l~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp~ 237 (322)
|.||+|.++ .+|. .+.++.|+.++++...+++ +++++|+|+||+||||| ++.+++ |+|||
T Consensus 83 ~~qS~v~~~~el~~~l~~~~~~~~l~R~~~~k~~~~~~~--~~~~~g~~~YP~lQaaD--------il~~~a---d~vpv 149 (341)
T 3sz3_A 83 FVQSHVPEHAQLGWVLNCYTQMGELSRMTQFKDKSARYA--NDVNAGLFGYPVLMAAD--------ILLYGA---HQVPV 149 (341)
T ss_dssp EEGGGCTHHHHHHHHHHTTSCHHHHHTCHHHHHHHHHHG--GGCCHHHHHHHHHHHHH--------HHTTTC---SEECC
T ss_pred EeccchhhhHHHHHHHHhhccHHHHHHHHHHHHHHhhcc--CCCChhhHHhHHHHHHH--------HHHcCC---CEEEe
Confidence 999999753 2332 1335666666666555543 57999999999999996 555666 88999
Q ss_pred ccChhhHHHHHHHHHHHhCC---------CCceeee---cccccCCCCCCCcCCCCCC--CCeeecCCCHHHHHHHHhcc
Q 020745 238 AIDQDPYFRMTRDVAPRIGY---------HKPALIE---SSFFPALQGETGKMSASDP--NSAIYVTDSAKAIKNKIILL 303 (322)
Q Consensus 238 G~DQd~~~~ltrdla~k~~~---------~kp~~l~---~~~lp~L~G~~~KMSkS~p--~~aI~L~D~p~~i~~KI~k~ 303 (322)
|.||+||+++|||+|+|+|. +.|..+. +++||||+++.+|||||.| +|+|||+|+|++|++|||+
T Consensus 150 G~DQ~~hlel~Rdia~rfn~~yg~~~~~f~~p~~li~~~~~~l~gL~dg~~KMSKS~~~~~~~I~L~D~p~~i~kKI~~- 228 (341)
T 3sz3_A 150 GSDQKQHLELARDIATRFNNIYSPEQPIFTIPEPYIPTVNARVMSLQDATKKMSKSDDNRKNVITLLEDPKSIIKKINK- 228 (341)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHCSSSCSSCCCEECCCSCCCCCEETTEEEEECCTTCSCGGGCCBTTCCHHHHHHHHHT-
T ss_pred ccchHHHHHHHHHHHHHhchhccCCCcccccChhhhccCcccccCCCCCCCccCCCCCCCCCeeecCCCHHHHHHHhhh-
Confidence 99999999999999999972 2344333 5789999753479999998 7999999999999999999
Q ss_pred CccCCCc--cccccC-CCCCC
Q 020745 304 KCADKQV--CIFWRT-RKCGI 321 (322)
Q Consensus 304 a~t~~~~--~~~~~~-~~~~~ 321 (322)
|+||+.. .+.+++ ++|++
T Consensus 229 a~Td~~~~~~~~~~~~~~p~v 249 (341)
T 3sz3_A 229 AQTDAETPPRIAYDVENKAGI 249 (341)
T ss_dssp CCCCCCSSCCCCCCTTTCHHH
T ss_pred ccCCCCCCcccccCCCCCcch
Confidence 8999887 466774 48765
No 34
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-48 Score=381.61 Aligned_cols=236 Identities=20% Similarity=0.214 Sum_probs=190.6
Q ss_pred hhhhhcCceeecCCHHHHHHHHHh-CCceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccC-C
Q 020745 59 HVFLRRGVFFAHRDLNDILDAYEK-GEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-L 136 (322)
Q Consensus 59 ~~l~~Rgi~~~~~d~~~ll~~~~~-~~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~-~ 136 (322)
-.|++|| +..+.+.+.|.+.+++ ++|+++|+||+||| +|||||++++++++++|++ |+.++++|||+|+++.+. .
T Consensus 13 ~~l~~rg-~~e~~~~e~L~~~L~~~~~p~~vy~G~~PTG-~LHlG~~~~al~~~~~~q~-g~~~ii~I~D~ha~t~~~~~ 89 (394)
T 2dlc_X 13 FGLITKN-LQEVLNPQIIKDVLEVQKRHLKLYWGTAPTG-RPHCGYFVPMTKLADFLKA-GCEVTVLLADLHAFLDNMKA 89 (394)
T ss_dssp HHHHHTT-CSEEECHHHHHHHHHTSCSCCEEEEEECCCS-CCBGGGHHHHHHHHHHHHT-TCEEEEEECHHHHHHTTTSS
T ss_pred HHHHHcC-cceecCHHHHHHHHHccCCCeEEEEEeCCCC-CccHHHHHHHHHHHHHHHc-CCcEEEEEcCCccccCCCCC
Confidence 4578999 6566666777777774 67889999999999 9999999999988888885 889999999999988654 6
Q ss_pred CHHHHHHHHHH----HHHHHHHcCCCCCceEEEecccccc-cccHHHHHHHHcccCHHHHHHhh----CCCCCccccccc
Q 020745 137 SVEESQRLARE----NAKDIIACGFDVTKTFIFSDFDYVG-GAFYKNMVKVAKCVTYNKVVGIF----GFTGEDHIGKVS 207 (322)
Q Consensus 137 ~~e~i~~~~~~----~~~~iiA~G~dp~kt~I~~ns~~~~-~~~~~~~~~l~k~~t~~~~~~~~----g~~~~~s~~~~~ 207 (322)
+.+.++.++.+ ..+.|+|+|+||+++.||.||+|.. ..++.+++.+++++|++++++.- ++.+++++|+|+
T Consensus 90 ~~e~~~~~~~~~~~~i~~~l~a~Gldp~k~~i~~qS~~~~~~~~~~~~~~l~~~~t~~~l~r~~~~~~r~~~~~~~g~~~ 169 (394)
T 2dlc_X 90 PLEVVNYRAKYYELTIKAILRSINVPIEKLKFVVGSSYQLTPDYTMDIFRLSNIVSQNDAKRAGADVVKQVANPLLSGLI 169 (394)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTCCCTTCEEEETHHHHTSHHHHHHHHHHHTTSCHHHHHHHTTTTSCCCSSCCTHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCChhHcEEEeCchhcchHHHHHHHHHHhCcCcHHHHhcccHhhhcccCCccceeee
Confidence 67777776532 3346789999999999999999964 45778888999999999998752 335678999999
Q ss_pred hhhhhcCCCCCCCccccccCCCCcccccccccChhhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCCee
Q 020745 208 FPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAI 287 (322)
Q Consensus 208 YP~lQaad~~~~~f~~i~~~~~~~~~lvp~G~DQd~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI 287 (322)
||+||||| ++.++. .++|+|.||++|++++||+++|+|+++|+.+++++||+|++ |+|||||.++++|
T Consensus 170 YP~lQaaD--------~l~~~~---~~v~~G~DQ~~~~~l~rdl~~r~~~~~p~~l~~pll~gl~~-G~KMSKS~~ns~I 237 (394)
T 2dlc_X 170 YPLMQALD--------EQFLDV---DCQFGGVDQRKIFVLAEENLPSLGYKKRAHLMNPMVPGLAQ-GGKMSASDPNSKI 237 (394)
T ss_dssp HHHHHHHH--------HHHTTC---SEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEECCCCCCC-----------CCSC
T ss_pred chhHhhcc--------HhhhCC---CEEecCccHHHHHHHHHHHHHHcCCCCCEEEecccccCCCC-CCcCCCCCCCCEE
Confidence 99999996 444555 45689999999999999999999999999999999999993 4899999976679
Q ss_pred ecCCCHHHHHHHHhccCccCCCc
Q 020745 288 YVTDSAKAIKNKIILLKCADKQV 310 (322)
Q Consensus 288 ~L~D~p~~i~~KI~k~a~t~~~~ 310 (322)
||+|+|++|++|||+ |+|++..
T Consensus 238 ~L~D~p~~i~kKI~k-a~Td~~~ 259 (394)
T 2dlc_X 238 DLLEEPKQVKKKINS-AFCSPGN 259 (394)
T ss_dssp BTTCCHHHHHHHHHH-SCCCTTC
T ss_pred eccCCHHHHHHHHHH-hcCCCCC
Confidence 999999999999999 6666543
No 35
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=100.00 E-value=3.7e-48 Score=378.45 Aligned_cols=231 Identities=14% Similarity=0.148 Sum_probs=189.2
Q ss_pred hhhhhcCceeec-CCHHHHHHHHHhCCceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccC--
Q 020745 59 HVFLRRGVFFAH-RDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKN-- 135 (322)
Q Consensus 59 ~~l~~Rgi~~~~-~d~~~ll~~~~~~~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~-- 135 (322)
..|.+||+++++ ++.+.|.+.++ ++++++|+||+|||+||||||+++++.++|||++ |+.++++|||.|+.+..+
T Consensus 38 ~~L~~Rg~~~~~~~~~e~l~~ll~-~~~~~vy~G~dPTg~sLHlGhlv~l~~l~~lQ~~-G~~~~~lIgD~haligdpsg 115 (392)
T 1y42_X 38 DLFEERGYVKDTAGTKEHIAELMR-TRRIGAYVGIDPTAPSLHVGHLLPLMPLFWMYLE-GYKAFTLIGGSTAKIGDPTG 115 (392)
T ss_dssp HHHHHHTCCSCEESCHHHHHHHHH-HCCCEEEEEECCCSSSCBGGGHHHHHHHHHHHHH-TCEEEEEECTTTTTTCCCCC
T ss_pred HHHHHCCcHHhhcCCHHHHHHHHc-CCCCEEEEeecCCCCCccHHHHHHHHHHHHHHHc-CCcEEEEEcCceeEeCCCCC
Confidence 578999999954 57775555554 5789999999999988999999999999999997 778899999999866532
Q ss_pred -------CCHHHHHHHHHHHHHHHHHc-----------CCC---CCceEEEecccccccccHHHHH-HHHcccCHHHHHH
Q 020745 136 -------LSVEESQRLARENAKDIIAC-----------GFD---VTKTFIFSDFDYVGGAFYKNMV-KVAKCVTYNKVVG 193 (322)
Q Consensus 136 -------~~~e~i~~~~~~~~~~iiA~-----------G~d---p~kt~I~~ns~~~~~~~~~~~~-~l~k~~t~~~~~~ 193 (322)
++.+++++|+.++.++++|+ |+| |+++.||+|++|.....+.+++ .+++++++++|.+
T Consensus 116 k~~~R~~~~~e~i~~n~~~i~~~~~a~~~~~~~~~~~~g~d~~~p~ks~i~~ns~~~~~~~~l~~l~~ig~~~~v~rml~ 195 (392)
T 1y42_X 116 RLKSRDHLSSSDATMNMTKIHYQLKKLWENVDTQMRARGYEADWARKRGIVNNNHWWNKQPMLEVLRRVGHALRIGPMLS 195 (392)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEEETHHHHTTCCHHHHHHHHTTTCCHHHHHS
T ss_pred cchhhccCCHHHHHHHHHHHHHHHHHHhccccccccccccccCCCcccEEEEccHHHhhhhHHHHHHHHhccCcHHHHhh
Confidence 58889999998887777765 456 6899999999997777778888 5999999999985
Q ss_pred h------hCCCCCccccccchhhhhcCCCCCCCccccccCCCCccc-ccccccChhhHHHHHHHHHHHhCC---------
Q 020745 194 I------FGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDPYFRMTRDVAPRIGY--------- 257 (322)
Q Consensus 194 ~------~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~-lvp~G~DQd~~~~ltrdla~k~~~--------- 257 (322)
+ ++..+++|+|+|+||+|||||+ +.+..+++| ++|+|.||.||++++||+|+|+|.
T Consensus 196 ~~~~k~r~~~~~~is~gef~YPlLQAaDi--------l~l~~~~~~~i~~gG~DQ~~ni~~grdlarrfn~~~~~~~~~~ 267 (392)
T 1y42_X 196 RDTVKNKMTQGDGVSFAEFTYPIMQGWDW--------FELFYQQGVQMQIGGSDQYGNIISGLEVVKAARESEPDPQERK 267 (392)
T ss_dssp SHHHHHTTSSSSCCCHHHHHHHHHHHHHH--------HHHHHHHCEEEEEECTTCHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred hhHHHHHhcCCCCcccHHHHHHHHHHHHH--------HHHhccCCccEEecCcchHhHHHHHHHHHHHHhhhcccccccc
Confidence 4 3335689999999999999974 333212234 447999999999999999999854
Q ss_pred --------CCceeeecccccCCCCCCCcCCCCCCCCeeecCC---CHHHHHHHHhc
Q 020745 258 --------HKPALIESSFFPALQGETGKMSASDPNSAIYVTD---SAKAIKNKIIL 302 (322)
Q Consensus 258 --------~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D---~p~~i~~KI~k 302 (322)
.+|+.+++++||+|+| +|||||. +|+|||+| +|+++++||++
T Consensus 268 ~~~p~l~~~~~~~l~~pll~~ldG--~KMSKS~-~naI~L~d~~tsp~~i~qki~~ 320 (392)
T 1y42_X 268 YVTPKTALDECVGFTVPLLTDSSG--AKFGKSA-GNAIWLDPYQTSVFDFYGYFVR 320 (392)
T ss_dssp HHSCCSGGGSCEEEECCCCBCTTC--CBTTBCS-SSBCBSSTTTSCHHHHHHHHHT
T ss_pred ccccccccCCccccccccCcCCch--hhccCCC-CCeeeccCCCCCHHHHHHHHHc
Confidence 4678889999999998 7999998 78999999 99999999998
No 36
>3p0j_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, tyrrs, pseudod translation, ATP-binding, nucleotide-binding, ligase; HET: TYE; 2.89A {Leishmania major} PDB: 3p0i_A* 3p0h_A*
Probab=100.00 E-value=2.7e-41 Score=349.81 Aligned_cols=208 Identities=13% Similarity=0.090 Sum_probs=177.7
Q ss_pred CceEEEEeeccCCCCcchhhhHHHHH-HH-HHHHhCCceEEEEeeCcccccccC--CCHHHHHHHHHHHHHHHHHcCCCC
Q 020745 84 EKFYLYTGRGPSSEALHLGHLVPFMF-TK-YLQDAFKVPLVIQLTDDEKCMWKN--LSVEESQRLARENAKDIIACGFDV 159 (322)
Q Consensus 84 ~~~~vytG~~PSg~slHlGhli~~~~-~~-~lQ~~~g~~v~I~IaD~~~~l~r~--~~~e~i~~~~~~~~~~iiA~G~dp 159 (322)
.+..|+++- ||| +|||||++++++ ++ |+|.++|++++|+|||+||+++++ .++|++++++.+++++|+|+|+|+
T Consensus 381 ~~l~~~~~p-s~g-~lHLGh~v~~~k~l~~~~~~~~g~~v~ilIaD~~A~i~d~~g~~~e~i~~~~~y~~~~~~alG~d~ 458 (690)
T 3p0j_A 381 KPHACMWMP-ALL-KVPLDVAEGMIKVTKDFIAAHPEGTVTLVLPDWSAVASDEITGVEKDISAALQVNCALLKAYGLPS 458 (690)
T ss_dssp SCEEEEECC-CCS-SCBHHHHHHHHHHHHHHHHHCSSCEEEEEECTTHHHHTTCTTCCHHHHHHHHHHHHHHHHHHTCCT
T ss_pred CcceEEecC-CCC-CcccchHHHHHHHHHHHHHHcCCCeEEEEEecchhhhCCCCCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 467788776 776 999999999988 44 567778999999999999999987 899999999999999999999998
Q ss_pred CceEEEeccccccc---ccHHHHHHHHcccCHHHHHHhhCCCCCccccccchhhhhcCCCCCCCccccccCCCCcccccc
Q 020745 160 TKTFIFSDFDYVGG---AFYKNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIP 236 (322)
Q Consensus 160 ~kt~I~~ns~~~~~---~~~~~~~~l~k~~t~~~~~~~~g~~~~~s~~~~~YP~lQaad~~~~~f~~i~~~~~~~~~lvp 236 (322)
++.|+.||+|... .+|.+++++++++|+++|+++++ .+++++|+|.||+|||||+ +.+++| ++|
T Consensus 459 -k~~fv~~S~~~~~~~~~~~~~vi~la~~~tl~r~~~~~~-~~~~~i~~~~YPlmQaaDi--------~~l~aD---i~~ 525 (690)
T 3p0j_A 459 -SVKIVTENEVILGNCDDFWVSVIGIARKNLLSHVEELYG-GEVRNAGQVIAALMRVATA--------LMLSVS---HVI 525 (690)
T ss_dssp -TSEEEEHHHHHHHTHHHHHHHHHHHHTTSCHHHHHHHTT-SCCSSHHHHHHHHHHHHHH--------HHTTCS---EEE
T ss_pred -CeEEEECCchhccchhhHHHHHHHHHHhhhHHHHHHHhC-CCCcchHHHHHHHHHHhhh--------hccCCC---EEe
Confidence 6767778888654 59999999999999999999986 6789999999999999974 456664 569
Q ss_pred cccChhhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHhccCccCC
Q 020745 237 CAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCADK 308 (322)
Q Consensus 237 ~G~DQd~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~k~a~t~~ 308 (322)
+|.||++|++|+||+++|.+ +|+.++++++|+|+|++.+||||.++|+|+|+|+|++|++|||+|+|+++
T Consensus 526 gG~DQ~~~~~LaRd~~~~~~--~~~~~~~~~~P~L~gp~~~~~~~s~~~~I~l~D~~~~i~~KI~kA~c~p~ 595 (690)
T 3p0j_A 526 STSLDGHINAFAREYTKERI--DCVQTLEGRIPALHRPGAAPAVLGADDVLYLDDNDMDIRRKIKKAYSAPN 595 (690)
T ss_dssp ECSTTTTTTHHHHHHTTTCS--EEEECCCCSSCCSSCCCC-------CCSCBTTCCHHHHHHHHHHSCCCTT
T ss_pred cccccHHHHHHHHHHHHhcc--CcccccccccccCCCcccccCCCCCCCeeeccCCHHHHHHHHHHhcCCCC
Confidence 99999999999999999954 68888999999999987777788889999999999999999999888763
No 37
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A* 4a91_A*
Probab=98.45 E-value=2.7e-06 Score=79.89 Aligned_cols=186 Identities=16% Similarity=0.193 Sum_probs=96.8
Q ss_pred ccCCCCcchhhhHHHHHHHHH-HHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 020745 93 GPSSEALHLGHLVPFMFTKYL-QDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (322)
Q Consensus 93 ~PSg~slHlGhli~~~~~~~l-Q~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (322)
.||| .|||||+...+ .+|+ .+.++..+++-|.|...- |.. ..+...+.+++.++|++++.. ++.||+..
T Consensus 13 sPtG-~LHiG~~rtal-~n~l~Ar~~~g~~ilRieDtD~~--R~~-----~~~~~~I~~dL~~LGl~~D~~-~~~qSer~ 82 (298)
T 1nzj_A 13 SPSG-ELHFGSLIAAL-GSYLQARARQGRWLVRIEDIDPP--REV-----PGAAETILRQLEHYGLHWDGD-VLWQSQRH 82 (298)
T ss_dssp CTTS-CCCHHHHHHHH-HHHHHHHHTTCEEEEEECCSCGG--GSC-----TTHHHHHHHHHHHTTCCCSSC-CEEGGGCH
T ss_pred CCCC-CccHHHHHHHH-HHHHHHHhcCCeEEEEEecCCch--hhH-----HHHHHHHHHHHHHcCCCCCCC-CeeeeCCH
Confidence 6888 89999999985 6773 344577788888885421 211 344556788899999999875 57788864
Q ss_pred ccccHHHHH----HHHc----ccCHHHHHHh---h-CCC-----C-------------C-----ccccccchhh-hhcCC
Q 020745 172 GGAFYKNMV----KVAK----CVTYNKVVGI---F-GFT-----G-------------E-----DHIGKVSFPP-VQAVP 215 (322)
Q Consensus 172 ~~~~~~~~~----~l~k----~~t~~~~~~~---~-g~~-----~-------------~-----~s~~~~~YP~-lQaad 215 (322)
..|..++ +-+. ..|..++.+. + |.- . . +-.|.+.++. .+.-|
T Consensus 83 --~~y~~~~~~L~~~G~aY~c~ct~~~l~~~~~~Y~g~cr~~~~~g~~~~~R~r~~~~~~~f~D~~~G~~~~~~~~~~~D 160 (298)
T 1nzj_A 83 --DAYREALAWLHEQGLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKLARED 160 (298)
T ss_dssp --HHHHHHHHHHHHTTCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHHHHSC
T ss_pred --HHHHHHHHHHHHcCCcccCcCCHHHHHHcCCCCCCccccCCcCCCCCcEEEecCCcccceehhhCcccccCcccCCCC
Confidence 2333322 2222 2455555542 1 100 0 0 1123333333 23333
Q ss_pred CCCCCccccccCCCCc-c---------------cccccccChhhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCC
Q 020745 216 SFPSSFPHLFSGKDHL-R---------------CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMS 279 (322)
Q Consensus 216 ~~~~~f~~i~~~~~~~-~---------------~lvp~G~DQd~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMS 279 (322)
+...++|- | ..|.-|.|+..+--....+.+-+|.+.|...|.+++.+.+| +|||
T Consensus 161 --------~VL~R~dG~PtY~la~vvdD~~~giThvIrG~D~l~~t~~q~~l~~alG~~~p~~~H~pll~~~~g--~KLS 230 (298)
T 1nzj_A 161 --------FIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQISLYQLFGWKVPDYIHLPLALNPQG--AKLS 230 (298)
T ss_dssp --------CEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEECBCCC---------
T ss_pred --------EEEECCCCCEeeeeeeeeEHHhcCCCEEEeCccccccHHHHHHHHHHcCCCCCeEEEeeeeECCCC--Cccc
Confidence 22222221 0 12333888665544445566889999998888888777775 8999
Q ss_pred CCCCCCeeecCCCHHHHHHHH
Q 020745 280 ASDPNSAIYVTDSAKAIKNKI 300 (322)
Q Consensus 280 kS~p~~aI~L~D~p~~i~~KI 300 (322)
|+..+.+|--.+...-+.+=+
T Consensus 231 KR~g~~~v~~~~~~~~~~~~l 251 (298)
T 1nzj_A 231 KQNHAPALPKGDPRPVLIAAL 251 (298)
T ss_dssp ------CCCSSCCHHHHHHHH
T ss_pred ccCCccChhcCCccHHHHHHH
Confidence 998433444445554444333
No 38
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide-B; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=98.45 E-value=3.1e-06 Score=84.71 Aligned_cols=186 Identities=14% Similarity=0.172 Sum_probs=111.0
Q ss_pred ccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEeccccc
Q 020745 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYV 171 (322)
Q Consensus 93 ~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~~ 171 (322)
-||| .|||||+..++ .+| +.+.+|..+++-|.|... .| .. ..+...+..++..+|++++.. ++.||+..
T Consensus 9 SPtG-~lHiG~artal-~n~l~Ar~~~G~filRieDtD~--~R-~~----~~~~~~i~~dL~wLGl~wde~-~~~QS~r~ 78 (492)
T 2cfo_A 9 SPTG-NLHIGTARTAV-FNWLYARHRGGKFILRIEDTDR--ER-SR----PEYTENILEGLQWLGLTWDEG-PYFQSDRL 78 (492)
T ss_dssp CTTS-CCBHHHHHHHH-HHHHHHHHTTCEEEEEECCCSS--SS-CC----HHHHHHHHHHHHHTTCCCSEE-EEEGGGCH
T ss_pred CCCC-CccHHHHHHHH-HHHHHHHhcCCeEEEEEeeCCc--cc-cc----hHHHHHHHHHHHHcCCCCCCC-CccccCCH
Confidence 5898 89999999986 466 445567788888888752 12 22 344556788888999998764 67888875
Q ss_pred ccccHHHHH-HH-----------------------------------HcccCHHHHHHhh--CC------CCC-------
Q 020745 172 GGAFYKNMV-KV-----------------------------------AKCVTYNKVVGIF--GF------TGE------- 200 (322)
Q Consensus 172 ~~~~~~~~~-~l-----------------------------------~k~~t~~~~~~~~--g~------~~~------- 200 (322)
. .|..++ ++ ++..+..+..+.+ |. +..
T Consensus 79 ~--~y~~~~~~Li~~G~AY~c~ct~~el~~~r~~~~~~g~~~~y~~~cr~ls~~e~~~~~~~g~~~~iR~k~~~~~~~~~ 156 (492)
T 2cfo_A 79 D--LYRQAIQTLLDKGLAYYCYCTPEELEALRAEQKAKGQAPRYDNRHRHLTPEEQAAFEAAGRTPVIRFKIEDDRQIEW 156 (492)
T ss_dssp H--HHHHHHHHHHHTTSEEEECCCHHHHHHHHHHHHHHTCCSSCCCTTTTCCHHHHHHHHHTTCCCEEEECCCTTCEEEE
T ss_pred H--HHHHHHHHHHHCCCceEecCCHHHHHHHHHHHHhcCCCCCCCcccccCCHHHHHHHHhCCCCceEEEEcCCCCceEE
Confidence 2 222211 11 1112222211110 11 000
Q ss_pred --ccccccchhhhhc-CCCCCCCccccccCCCC------cc---------------cccccccChhhHHHHHHHHHHHhC
Q 020745 201 --DHIGKVSFPPVQA-VPSFPSSFPHLFSGKDH------LR---------------CLIPCAIDQDPYFRMTRDVAPRIG 256 (322)
Q Consensus 201 --~s~~~~~YP~lQa-ad~~~~~f~~i~~~~~~------~~---------------~lvp~G~DQd~~~~ltrdla~k~~ 256 (322)
.-.|.+.++.-+. -| +...+.| .| +.|..|.|+..+--.-+.+.+.+|
T Consensus 157 ~D~v~G~~~~~~~~~~~D--------~Vl~R~d~~p~~G~PtY~la~vvDD~~~gIthviRG~D~~~~t~~q~~l~~alg 228 (492)
T 2cfo_A 157 QDLVRGRVSWQGADLGGD--------MVIARAAPRGEIGYPLYNLVVVVDDIAMGITDVIRGEDHIGNTPKQILLYEALG 228 (492)
T ss_dssp EETTTEEEEEEGGGGCSS--------EEEECSCCTTSCCCBCHHHHHHHHHHHTTCSEEEEEGGGTTHHHHHHHHHHHTT
T ss_pred EecceeeeeecccccCCC--------eEEEEecCCCCCCceeehhhhhhhhhcCCCCeEEEchhhhhCHHHHHHHHHHcC
Confidence 0113444444444 33 2222322 11 345588887776666677779999
Q ss_pred CCCceeeecccccCCCCCCCcCCCCCCCCeeecCC------CHHHHHHHHhc
Q 020745 257 YHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKIIL 302 (322)
Q Consensus 257 ~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D------~p~~i~~KI~k 302 (322)
.+.|...|.+++.+.+| +|||||.. + +.+.+ .|+.|..=+..
T Consensus 229 ~~~P~~~H~plil~~~g--~KLSKr~g-~-~~l~~~r~~G~~peal~~~l~~ 276 (492)
T 2cfo_A 229 ATPPNFAHTPLILNSTG--QKLSKRDG-V-TSISDFRAMGYLAPALANYMTL 276 (492)
T ss_dssp CCCCEEEEECCEECSSS--SBCCTTSS-C-CBHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCceEEEeeeEECCCC--CEecccCC-c-ccHHHHHHCCCCHHHHHHHHHH
Confidence 99898888888888886 89999983 3 23332 57777766655
No 39
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=98.40 E-value=1.9e-06 Score=85.75 Aligned_cols=192 Identities=11% Similarity=0.100 Sum_probs=114.5
Q ss_pred ccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-------E
Q 020745 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF-------I 164 (322)
Q Consensus 93 ~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~-------I 164 (322)
.||| .|||||+...+ .+| +.+..|..+++-|-|... .| .. ..+...++.++..+|++++... .
T Consensus 9 sPtG-~LHiG~~rtal-~n~l~Ar~~~G~filRieDtD~--~R-~~----~~~~~~I~~dl~wlGl~wd~~~~~gG~~gp 79 (468)
T 1j09_A 9 SPTG-DPHVGTAYIAL-FNYAWARRNGGRFIVRIEDTDR--AR-YV----PGAEERILAALKWLGLSYDEGPDVGGPHGP 79 (468)
T ss_dssp CCSS-SCBHHHHHHHH-HHHHHHHHTTCEEEECBCCCCT--TS-CC----TTHHHHHHHHHHHTTCCCSBBTTTBCTTCC
T ss_pred CCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEEeCcCCC--cc-cC----hHHHHHHHHHHHHcCCCCCCCCCCCCCCCC
Confidence 5898 89999999985 566 445556677777877642 12 11 2334457788889999998752 3
Q ss_pred EecccccccccHH---HHHHH--------------------------HcccCHHHHHHhh--CC--------CC--Ccc-
Q 020745 165 FSDFDYVGGAFYK---NMVKV--------------------------AKCVTYNKVVGIF--GF--------TG--EDH- 202 (322)
Q Consensus 165 ~~ns~~~~~~~~~---~~~~l--------------------------~k~~t~~~~~~~~--g~--------~~--~~s- 202 (322)
|.||+... .|+. .+++- ++..+..+..+.+ |. .. .+.
T Consensus 80 ~~QS~r~~-~y~~~~~~L~~~G~aY~c~ct~~el~~~r~~~~~y~~~cr~l~~~e~~~~~~~g~~~~~R~k~~~~~~~~~ 158 (468)
T 1j09_A 80 YRQSERLP-LYQKYAEELLKRGWAYRAFETPEELEQIRKEKGGYDGRARNIPPEEAEERARRGEPHVIRLKVPRPGTTEV 158 (468)
T ss_dssp CBGGGCHH-HHHHHHHHHHHHTSEEEECCCHHHHHHHHHHHSSCCCGGGGSCHHHHHHHHHTTCCCEEEECCCSSCEEEE
T ss_pred eeccCCHH-HHHHHHHHHHHcCCeEEcCCCHHHHHHHHHHcCCCCCcccCCCHHHHHHHHhcCCCceEEEecCCCCceEE
Confidence 78888753 1211 11111 2234444433321 21 00 111
Q ss_pred ----ccccchhhhhcCCCCCCCccccccCCCCc-c---------------cccccccChhhHHHHHHHHHHHhCCCCcee
Q 020745 203 ----IGKVSFPPVQAVPSFPSSFPHLFSGKDHL-R---------------CLIPCAIDQDPYFRMTRDVAPRIGYHKPAL 262 (322)
Q Consensus 203 ----~~~~~YP~lQaad~~~~~f~~i~~~~~~~-~---------------~lvp~G~DQd~~~~ltrdla~k~~~~kp~~ 262 (322)
.|++.++.-+.-| +...+.|. | +.|..|.|+..+.-...-+.+.+|.+.|..
T Consensus 159 ~D~~~G~~~~~~~~~~D--------~Vl~R~dg~PtY~~a~vvDD~~~githvirG~D~~~~t~~q~~l~~alg~~~p~~ 230 (468)
T 1j09_A 159 KDELRGVVVYDNQEIPD--------VVLLKSDGYPTYHLANVVDDHLMGVTDVIRAEEWLVSTPIHVLLYRAFGWEAPRF 230 (468)
T ss_dssp EETTTEEEEEEGGGSCC--------CEEECTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHTCCCCEE
T ss_pred EeccceeEeecccCCCC--------eEEEecCCCeeehhHHHHHHHHCCCCeEEEChhhhhhHHHHHHHHHHcCCCCCeE
Confidence 2456666665554 22223321 1 234459998888777788889999988877
Q ss_pred eecccccCCCCCCCcCCCCCCCCeeecCC------CHHHHHHHHhccCcc
Q 020745 263 IESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKIILLKCA 306 (322)
Q Consensus 263 l~~~~lp~L~G~~~KMSkS~p~~aI~L~D------~p~~i~~KI~k~a~t 306 (322)
.|.+++.+.+| +||||+.. +. .|.+ .|+.|.+=+...-.+
T Consensus 231 ~h~~li~~~~g--~klSKR~g-~~-~l~~~~~~G~~peal~~~l~~lG~~ 276 (468)
T 1j09_A 231 YHMPLLRNPDK--TKISKRKS-HT-SLDWYKAEGFLPEALRNYLCLMGFS 276 (468)
T ss_dssp EEECCCBCTTS--CBCCTTTS-CC-BHHHHHHTTCCHHHHHHHHHHHSCC
T ss_pred EEeeeeeCCCC--Cccccccc-hh-hHHHHHHCCCCHHHHHHHHHHhccC
Confidence 77677666665 89999983 32 3332 577777666553333
No 40
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis} PDB: 3pny_A 3pnv_A
Probab=98.17 E-value=1.1e-05 Score=80.90 Aligned_cols=187 Identities=12% Similarity=0.098 Sum_probs=108.7
Q ss_pred ccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCce-------EE
Q 020745 93 GPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKT-------FI 164 (322)
Q Consensus 93 ~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt-------~I 164 (322)
.||| .|||||+...+ .+| +.+..|..+++-|-|... .| ... .+...++.++..+|++++.. -+
T Consensus 14 sPTG-~LHiG~~rtAL-~n~l~Ar~~gG~fiLRieDtD~--~R-~~~----~~~~~I~~~L~wlGl~wDegp~~gG~~~~ 84 (498)
T 2ja2_A 14 SPTG-TPHVGLVRTAL-FNWAYARHTGGTFVFRIEDTDA--QR-DSE----ESYLALLDALRWLGLDWDEGPEVGGPYGP 84 (498)
T ss_dssp CSSS-SCBHHHHHHHH-HHHHHHHHHTCEEEECBCCCCT--TT-CCH----HHHHHHHHHHHHHTCCCSBBTTTBCTTCC
T ss_pred CCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEEECcCCC--cc-cCh----HHHHHHHHHHHHcCCCcCCCcCcCCCCCC
Confidence 6898 89999999985 556 434445556666766642 12 222 33446778888899998873 36
Q ss_pred EecccccccccHHHH----HHHH-------------------------------cccCHHHHHHhh--CCC------C--
Q 020745 165 FSDFDYVGGAFYKNM----VKVA-------------------------------KCVTYNKVVGIF--GFT------G-- 199 (322)
Q Consensus 165 ~~ns~~~~~~~~~~~----~~l~-------------------------------k~~t~~~~~~~~--g~~------~-- 199 (322)
|.||+... .|..+ ++-+ |..+..+..+.. |.. -
T Consensus 85 ~~QS~r~~--~y~~~~~~L~~~g~aY~c~ct~eel~~~r~~~~~~~~~~Y~~~cr~l~~~e~~~~~~~g~~~~iR~k~~~ 162 (498)
T 2ja2_A 85 YRQSQRAE--IYRDVLARLLAAGEAYHAFSTPEEVEARHVAAGRNPKLGYDNFDRHLTDAQRAAYLAEGRQPVVRLRMPD 162 (498)
T ss_dssp CBGGGCHH--HHHHHHHHHHHTTSEEEECCCHHHHHHHHHHTTCCTTSCCCCGGGGCCHHHHHHHHHTTCCCEEEECCCS
T ss_pred eeeecCHH--HHHHHHHHHHHcCCeEEeCCCHHHHHHHHHHHhcCCCCCCCCccccCCHHHHHhhhccCCCceEEEECCC
Confidence 78888752 22221 1111 112222222111 110 0
Q ss_pred -Cc-----cccccchhhhhcCCCCCCCccccccCCCCc-c---------------cccccccChhhHHHHHHHHHHHh--
Q 020745 200 -ED-----HIGKVSFPPVQAVPSFPSSFPHLFSGKDHL-R---------------CLIPCAIDQDPYFRMTRDVAPRI-- 255 (322)
Q Consensus 200 -~~-----s~~~~~YP~lQaad~~~~~f~~i~~~~~~~-~---------------~lvp~G~DQd~~~~ltrdla~k~-- 255 (322)
.+ -.|.+.++.-+.-| +...++|. | +.|..|.|+..+.-..+-+.+.+
T Consensus 163 ~~~~~~D~v~G~i~~~~~~~~D--------~Vi~R~Dg~ptY~lA~vVDD~~mgithviRG~D~~~~t~~q~~l~~aL~~ 234 (498)
T 2ja2_A 163 DDLAWNDLVRGPVTFAAGSVPD--------FALTRASGDPLYTLVNPCDDALMKITHVLRGEDLLPSTPRQLALHQALIR 234 (498)
T ss_dssp SCEEEEETTTEEEEECTTCSCC--------CBSBCTTSCBCHHHHHHHHHHHTTCCEEEEEGGGGGGHHHHHHHHHHHHH
T ss_pred CceEEEecccceEeecccccCc--------ceeEccCCCcchhhHHHHHhhhcCCCEEEEChhhhhccHHHHHHHHHHHh
Confidence 01 12445555444433 22222221 0 22346999888887778888888
Q ss_pred ---CCCCceeeecccccCCCCCCCcCCCCCCCCeeecCC------CHHHHHHHHhc
Q 020745 256 ---GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKIIL 302 (322)
Q Consensus 256 ---~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D------~p~~i~~KI~k 302 (322)
|.+.|...|.+++.+.+| +||||+.. ++.|.+ .|+.|.+=+..
T Consensus 235 ~g~g~~~P~~~h~plil~~~g--~KLSKR~g--~~~l~~~r~~G~~peAl~~~l~~ 286 (498)
T 2ja2_A 235 IGVAERIPKFAHLPTVLGEGT--KKLSKRDP--QSNLFAHRDRGFIPEGLLNYLAL 286 (498)
T ss_dssp TTSCCCCCEEEEECCEECSSS--SBCCTTSG--GGBHHHHHHHTCCHHHHHHHHHT
T ss_pred hcCCCCCCeEEEeeeeECCCC--CcccccCC--cccHHHHHhCCCCHHHHHHHHHH
Confidence 998898888888888776 89999973 333433 56666665554
No 41
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima} PDB: 3akz_B*
Probab=98.05 E-value=8e-06 Score=81.62 Aligned_cols=193 Identities=12% Similarity=0.165 Sum_probs=112.0
Q ss_pred eEEEEeeccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-
Q 020745 86 FYLYTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF- 163 (322)
Q Consensus 86 ~~vytG~~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~- 163 (322)
+.+=..=.||| .|||||+...+ .+| +.+..|..+++-|-|... .| .. ......+.+++..+|++++...
T Consensus 26 v~~RFAPsPtG-~LHiG~~rtal-~n~l~Ar~~~G~filRieDtD~--~R-~~----~~~~~~I~~dL~wlGl~wDe~~~ 96 (488)
T 3afh_A 26 VRVRFAPSPTG-HLHVGGARTAL-FNWMFARKEGGKFILRIEDTDT--ER-SS----REYEQQILESLRWCGLDWDEGPD 96 (488)
T ss_dssp CEEEECCCCSS-SCBHHHHHHHH-HHHHHHHHHTCEEEECBCCCCT--TT-CC----HHHHHHHHHHHHHTTCCCSBBTT
T ss_pred ceEEECCCCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEEEeeCCc--cc-cc----HHHHHHHHHHHHHcCCCCCcCCC
Confidence 33334446798 89999999985 566 444456667777777642 12 22 2334467788889999988753
Q ss_pred ------EEecccccccccHHHHH----HHHccc----CHHHHHH-------------hhCC--------CC-Cc-----c
Q 020745 164 ------IFSDFDYVGGAFYKNMV----KVAKCV----TYNKVVG-------------IFGF--------TG-ED-----H 202 (322)
Q Consensus 164 ------I~~ns~~~~~~~~~~~~----~l~k~~----t~~~~~~-------------~~g~--------~~-~~-----s 202 (322)
+|.||+.. ..|..++ +-+... |..++.+ ..|. .+ .+ -
T Consensus 97 ~gG~~gp~~QSer~--~~y~~~~~~L~~~G~aY~c~ct~eel~~~~~~~Y~~~~~~~~~G~~~~iR~k~~~~~~~~~D~v 174 (488)
T 3afh_A 97 IGGDFGPYRQSERL--EIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLL 174 (488)
T ss_dssp TBCTTCCCBGGGCH--HHHHHHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETT
T ss_pred CCCCCCCeeeeCCH--HHHHHHHHHHHHcCCeEecCCCHHHHHhhcCCCCCchhhHHhcCCCceEEEECCCCceeEEecc
Confidence 57788864 2333322 111111 1111100 0111 10 01 1
Q ss_pred ccccchhhhhcCCCCCCCccccccCCCC-----------------cccccccccChhhHHHHHHHHHHHhCCCCceeeec
Q 020745 203 IGKVSFPPVQAVPSFPSSFPHLFSGKDH-----------------LRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES 265 (322)
Q Consensus 203 ~~~~~YP~lQaad~~~~~f~~i~~~~~~-----------------~~~lvp~G~DQd~~~~ltrdla~k~~~~kp~~l~~ 265 (322)
.|.+.++.-+.-| +...+.| + +.|..|.|+..+--..+-+.+.+|.+.|...|.
T Consensus 175 ~G~~~~~~~~~~D--------~Vl~R~DG~PtY~lA~vVDD~~mgI-ThViRG~D~l~~tp~q~~l~~aLG~~~P~f~H~ 245 (488)
T 3afh_A 175 KGYMEFDNSTLED--------FIIMKSNGFPTYNFAVVVDDHLMRI-SHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHI 245 (488)
T ss_dssp TEEEEEEGGGSCC--------EEEECTTSCBCHHHHHHHHHHHTTC-SEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEE
T ss_pred ceeEeecCCCCCC--------eEEEecCCCeehhhHHHHHHHhcCC-CEEEEchhhhhCHHHHHHHHHHcCCCCCeEEEE
Confidence 2344444433322 1111111 1 234569998888777788889999999988888
Q ss_pred ccccCCCCCCCcCCCCCCCCeeecCC------CHHHHHHHHhc
Q 020745 266 SFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKIIL 302 (322)
Q Consensus 266 ~~lp~L~G~~~KMSkS~p~~aI~L~D------~p~~i~~KI~k 302 (322)
+++.+.+| +||||+. + ++.|.+ .|+.|.+=+..
T Consensus 246 pli~~~~g--~KLSKR~-g-~~~l~~~r~~G~~peal~n~l~~ 284 (488)
T 3afh_A 246 PLILGSDR--TPLSKRH-G-ATSVEHFRREGILSRALMNYLAL 284 (488)
T ss_dssp CCEECTTS--SBCCTTT-S-CCBHHHHHHHTCCHHHHHHHHHH
T ss_pred eeeeCCCC--CcccCcC-C-cccHHHHHHCCCCHHHHHHHHHH
Confidence 88888776 8999998 3 344443 67777766655
No 42
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=97.95 E-value=9.4e-06 Score=82.89 Aligned_cols=196 Identities=12% Similarity=0.171 Sum_probs=113.5
Q ss_pred eEEEEeeccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceE-
Q 020745 86 FYLYTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTF- 163 (322)
Q Consensus 86 ~~vytG~~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~- 163 (322)
+.+=..=.||| .|||||+...+ .+| +.+.+|..+++-|.|... .| .. ..+...+..++..+|++++...
T Consensus 130 v~~RFaPsPTG-~LHiG~artAl-~n~l~Ar~~~G~~ilRieDtD~--~r-~~----~~~~~~I~~dL~wlGl~~D~~~~ 200 (592)
T 3al0_C 130 VRVRFAPSPTG-HLHVGGARTAL-FNWMFARKEGGKFILRIEDTDT--ER-SS----REYEQQILESLRWCGLDWDEGPD 200 (592)
T ss_dssp CEEEECCCSSS-CCBHHHHHHHH-HHHHHHHHHTCEEEECBCCCCS--SS-CC----HHHHHHHHHHHHHTTCCCSBBTT
T ss_pred EEEEECCCCCC-CccHHHHHHHH-HHHHHHHhcCCcEEEEecCcCh--hh-cc----HHHHHHHHHHHHHcCCCCCCCCC
Confidence 33434467898 89999999985 556 555556677888877542 12 22 2334457788889999987742
Q ss_pred ------EEecccccccccHHHHH----HHHccc----CHHHH-------------HHhhCC--------C-CC-----cc
Q 020745 164 ------IFSDFDYVGGAFYKNMV----KVAKCV----TYNKV-------------VGIFGF--------T-GE-----DH 202 (322)
Q Consensus 164 ------I~~ns~~~~~~~~~~~~----~l~k~~----t~~~~-------------~~~~g~--------~-~~-----~s 202 (322)
+|.||+.. ..|..++ +-+... |..++ ....|. . .. .-
T Consensus 201 ~gG~~gp~~qSer~--~~y~~~~~~L~~~G~aY~c~ct~~el~~~~~~~Y~~~~~~~~~g~~~~iR~k~~~~~~~~~D~v 278 (592)
T 3al0_C 201 IGGDFGPYRQSERL--EIYREYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLL 278 (592)
T ss_dssp TBCTTCCCBSTTCH--HHHHHHHHHHHHTTTEEEEEEETTEEEEECCCCSSCCHHHHHTTCCEEEEECCCSSCCEECCTT
T ss_pred cCCCCCCeeeeCCH--HHHHHHHHHHHHcCCceEecCCHHHHHhhcCCCCCcHHHHhhcCCCceEEEECCCCCceeeecc
Confidence 56788764 2333322 121111 00000 000110 0 00 11
Q ss_pred ccccchhhhhcCCCCCCCccccccCCCC-----------------cccccccccChhhHHHHHHHHHHHhCCCCceeeec
Q 020745 203 IGKVSFPPVQAVPSFPSSFPHLFSGKDH-----------------LRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIES 265 (322)
Q Consensus 203 ~~~~~YP~lQaad~~~~~f~~i~~~~~~-----------------~~~lvp~G~DQd~~~~ltrdla~k~~~~kp~~l~~ 265 (322)
.|.+.++.-+.-| +...+.| + +.|..|.|+..+.-..+-+.+.+|.+.|...|.
T Consensus 279 ~G~~~~~~~~~~D--------~Vl~R~dg~ptY~~a~vvDD~~~gi-thvirG~D~~~~t~~q~~l~~alg~~~P~~~hl 349 (592)
T 3al0_C 279 KGYMEFDNSTLED--------FIIMKSNGFPTYNFAVVVDDHLMRI-SHVFRGEDHLSNTPKQLMIYEAFGWEAPVFMHI 349 (592)
T ss_dssp TCSEECCSSSSCC--------EEEECTTSCCCHHHHHHHHHHHTTC-SBCCEEGGGGGGHHHHHHHHTTTTCCCCBCCEE
T ss_pred cceeeeccccCCC--------eEEEcCCCCeehhhHHHHHHHhcCC-CeEEEchhhHhCHHHHHHHHHHhCCCCCeEEEe
Confidence 2334443332222 1111111 2 334579998888877788889999988987778
Q ss_pred ccccCCCCCCCcCCCCCCCCeeecCC------CHHHHHHHHhccCc
Q 020745 266 SFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKIILLKC 305 (322)
Q Consensus 266 ~~lp~L~G~~~KMSkS~p~~aI~L~D------~p~~i~~KI~k~a~ 305 (322)
+++.+.+| +||||+. ++ +.|.+ .|+.|.+=+...-.
T Consensus 350 pli~~~~g--~KLSKR~-g~-~~l~~~~~~G~~peal~~~l~~lG~ 391 (592)
T 3al0_C 350 PLILGSDR--TPLSKRH-GA-TSVEHFRREGILSRALMNYLALLGW 391 (592)
T ss_dssp CCCBCTTS--SBCCTTT-CS-SBHHHHHHTTCCHHHHHHHHTTTTB
T ss_pred eeeeCCCC--CcccccC-Cc-ccHHHHHHCCCCHHHHHHHHHHhCC
Confidence 88877776 8999998 33 44443 67777776665333
No 43
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.61 E-value=0.00026 Score=71.45 Aligned_cols=69 Identities=16% Similarity=0.237 Sum_probs=49.7
Q ss_pred eccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEecccc
Q 020745 92 RGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY 170 (322)
Q Consensus 92 ~~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~ns~~ 170 (322)
=.||| .|||||+..++ ++| +.+.+|..+++-|.|.-.- | .. ..+...+.+++..+|++++ .++.||+.
T Consensus 103 PsPtG-~LHIGhaRtal-~n~l~Ar~~~G~~iLRieDtD~~--R-~~----~e~~~~I~edL~wLGl~wd--~~~~qSdr 171 (553)
T 3aii_A 103 PNPSG-PLHIGHARAAI-LNHEYARKYDGRLILRIEDTDPR--R-VD----PEAYDMIPADLEWLGVEWD--ETVIQSDR 171 (553)
T ss_dssp CCSSS-SCBHHHHHHHH-HHHHHHHHTTCEEEEEECCCCGG--G-CC----TTHHHHHHHHHHHHTCCCS--EEEEGGGG
T ss_pred CCCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEEECcCCcc--c-cc----HHHHHHHHHHHHHcCCCCC--CCcccccC
Confidence 35688 89999999985 566 5566788888888776421 2 11 2344567788889999986 46889987
Q ss_pred c
Q 020745 171 V 171 (322)
Q Consensus 171 ~ 171 (322)
.
T Consensus 172 ~ 172 (553)
T 3aii_A 172 M 172 (553)
T ss_dssp H
T ss_pred H
Confidence 6
No 44
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate-T ligase 1, glurs 1, structural genomics, joint center for ST genomics, JCSG; 2.34A {Thermotoga maritima}
Probab=97.49 E-value=0.00029 Score=70.24 Aligned_cols=65 Identities=15% Similarity=0.074 Sum_probs=46.7
Q ss_pred ccccccChhhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCC------CHHHHHHHHhc
Q 020745 234 LIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD------SAKAIKNKIIL 302 (322)
Q Consensus 234 lvp~G~DQd~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D------~p~~i~~KI~k 302 (322)
.|..|.||..+.-.-.-+.+.+|.+.|...|.+++-+.+| +||||+. ++. .|.+ .|+.|.+-+..
T Consensus 221 hvirG~D~~~~t~~q~~l~~aLG~~~p~~~H~plil~~~G--~KLSKR~-g~~-~l~~~~~~G~~peal~~~l~~ 291 (481)
T 2o5r_A 221 HVIRGDDHLSNTLRQLALYEAFEKAPPVFAHVSTILGPDG--KKLSKRH-GAT-SVEAFRDMGYLPEALVNYLAL 291 (481)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHTTCCCCEEEEECCEECTTS--SBCCGGG-SCC-BHHHHHHHTCCHHHHHHHHHT
T ss_pred eEEEChhHHHhHHHHHHHHHHcCCCCCeEEEEeeEECCCC--CcccCcC-Ccc-cHHHHHHCCCCHHHHHHHHHH
Confidence 3458999888877778888999998898777777666665 8999998 332 4433 56666665554
No 45
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=97.19 E-value=0.0011 Score=66.49 Aligned_cols=65 Identities=20% Similarity=0.322 Sum_probs=32.2
Q ss_pred ccccChhhH---HHHHHHHH-HHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCC-----CHHHHHHHHhc
Q 020745 236 PCAIDQDPY---FRMTRDVA-PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKIIL 302 (322)
Q Consensus 236 p~G~DQd~~---~~ltrdla-~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D-----~p~~i~~KI~k 302 (322)
.+|.|+... ......++ .-+|.+.|..+|+.++.. .|.|+|||||. +|.|.+.| .|+.++.=+.+
T Consensus 235 ~~G~Dh~~~h~s~~~~~~i~~~alG~~~p~~~h~~~i~~-~g~g~KmSKs~-Gn~i~~~~~~~~~~pdalR~~l~~ 308 (523)
T 1irx_A 235 PAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYEFVGI-KGQKGKMSGSK-GNVILLSDLYEVLEPGLVRFIYAR 308 (523)
T ss_dssp CEEHHHHSTTSHHHHHHHHHHHHHCCCCCBCCEECCEEE-SCC----------CCCCHHHHHTTSCHHHHHHHHHS
T ss_pred CCCcCccCCCcchhhHHHHHHHHhCCCCCeEEEEEEEEe-CCCCCCCCCcC-CCCCCHHHHHHHcCHHHHHHHHHh
Confidence 457775551 11334555 457877787777776654 32358999998 77776543 56666655544
No 46
>4g6z_A Glutamate-tRNA ligase; aminoacyl-tRNA synthetase, AARS, class 1B AARS, ATP-dependen charging, protein synthesis, structural genomics; HET: GLU; 2.05A {Burkholderia thailandensis}
Probab=97.19 E-value=0.0038 Score=62.24 Aligned_cols=76 Identities=14% Similarity=0.243 Sum_probs=51.7
Q ss_pred eEEEEeeccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEE
Q 020745 86 FYLYTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFI 164 (322)
Q Consensus 86 ~~vytG~~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I 164 (322)
+.+=..=.||| .|||||+...+ .+| +.+..|..+++-|-|... .| .. ..+...+..++..+|++++.. +
T Consensus 26 v~~RFAPSPTG-~lHiG~~rtal-~n~l~Ar~~~G~filRieDtD~--~R-~~----~~~~~~i~~dl~wlGl~~d~~-~ 95 (490)
T 4g6z_A 26 VRTRFAPSPTG-FIHLGNIRSAL-YPWAFARKMKGTFVLRIEDTDV--ER-SS----QEAVDAILEGMAWLGLDYDEG-P 95 (490)
T ss_dssp CEEEECCCCCS-CCBHHHHHHHH-HHHHHHHHTTCEEEEEECCCCG--GG-CC----HHHHHHHHHHHHHTTCCCSEE-E
T ss_pred ceEEeCCCCCC-CccHHHHHHHH-HHHHHHHhcCCeEEEEeCCCCc--cc-cc----HHHHHHHHHHHHHcCCCCCCC-C
Confidence 33333446788 89999999985 566 445567777888876542 12 22 344556788888999998764 6
Q ss_pred Eeccccc
Q 020745 165 FSDFDYV 171 (322)
Q Consensus 165 ~~ns~~~ 171 (322)
+.||+..
T Consensus 96 ~~qS~r~ 102 (490)
T 4g6z_A 96 YYQMQRM 102 (490)
T ss_dssp EEGGGCH
T ss_pred cccccCH
Confidence 7888864
No 47
>4gri_A Glutamate--tRNA ligase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, aminoacyl-tRNA synthetase; HET: GLU; 2.60A {Borrelia burgdorferi}
Probab=96.94 E-value=0.0052 Score=61.60 Aligned_cols=48 Identities=10% Similarity=0.008 Sum_probs=37.0
Q ss_pred cccccccChhhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCC
Q 020745 233 CLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASD 282 (322)
Q Consensus 233 ~lvp~G~DQd~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~ 282 (322)
+.|..|.|....--.-+-|.+-+|.+.|...|.+++.+-+| +|+||..
T Consensus 231 THViRG~D~l~sTp~q~~l~~alg~~~P~y~H~pli~~~~g--~kLSKR~ 278 (512)
T 4gri_A 231 THVLRAQEWVSSGPLHVLLYKAFKWKPPIYCHLPMVMGNDG--QKLSKRH 278 (512)
T ss_dssp SEEEEEGGGGGGHHHHHHHHHHHTCCCCEEEEECCCBCTTS--SBCCTTT
T ss_pred ceeccccccccccHHHHHHHHHcCCCCCeEEecchhccccc--cccCccc
Confidence 35667777665554446678889999998888888887775 8999997
No 48
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=94.76 E-value=0.19 Score=50.71 Aligned_cols=84 Identities=17% Similarity=0.261 Sum_probs=56.1
Q ss_pred HHHHhCC--ceEEEEeeccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHH
Q 020745 78 DAYEKGE--KFYLYTGRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIA 154 (322)
Q Consensus 78 ~~~~~~~--~~~vytG~~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA 154 (322)
+.+++|+ ++..=.+=.||| .|||||+-.++ ++| +.+.+|..+++-|.|.-. .| .. ..+...+.+++..
T Consensus 17 ~dl~~~~~~~v~tRFaPSPtG-~LHIGhaRtal-~n~l~Ar~~gG~fiLRieDTD~--~R-~~----~e~~~~I~edL~w 87 (553)
T 1qtq_A 17 EDLASGKHTTVHTRFPPEPNG-YLHIGHAKSIC-LNFGIAQDYKGQCNLRFDDTNP--VK-ED----IEYVESIKNDVEW 87 (553)
T ss_dssp HHHHHTSCSSCEEEECCCTTS-CCBHHHHHHHH-HHHHHHHHTTCEEEEEECCCCG--GG-CC----HHHHHHHHHHHHH
T ss_pred hHhhcCCcCceEEEeCCCCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEEECCCCc--hh-cC----HHHHHHHHHHHHH
Confidence 4455554 344444566788 89999999985 566 556677788888877642 12 22 2444567788889
Q ss_pred cCCCCCceEEEeccccc
Q 020745 155 CGFDVTKTFIFSDFDYV 171 (322)
Q Consensus 155 ~G~dp~kt~I~~ns~~~ 171 (322)
+|++++.. ++.||+..
T Consensus 88 LGl~wde~-~~~qSer~ 103 (553)
T 1qtq_A 88 LGFHWSGN-VRYSSDYF 103 (553)
T ss_dssp TTCCCSSS-CEEGGGGH
T ss_pred cCCCCCCC-CeehcccH
Confidence 99998542 47788875
No 49
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=94.19 E-value=0.2 Score=52.87 Aligned_cols=84 Identities=20% Similarity=0.283 Sum_probs=57.0
Q ss_pred HHHHhCCceEEEE--eeccCCCCcchhhhHHHHHHHH-HHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHH
Q 020745 78 DAYEKGEKFYLYT--GRGPSSEALHLGHLVPFMFTKY-LQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIA 154 (322)
Q Consensus 78 ~~~~~~~~~~vyt--G~~PSg~slHlGhli~~~~~~~-lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA 154 (322)
+.++.|+.-.+.| +=.||| .|||||+-.++ ++| +.+.+|..+++-|.|.-.- | .. ..+...+..++..
T Consensus 57 ~dl~~g~~~~v~tRFaPSPtG-~LHIGhARtAL-~n~l~Ar~~gG~fiLRIEDTD~~--R-~~----~e~~~~IledL~w 127 (851)
T 2hz7_A 57 RDLEAGKYPRVVTRFPPDPSG-YAHLGHVFASL-LDFNTARQYGGQFNLRMDDTNPE--L-AR----QEYVDSIADDLKW 127 (851)
T ss_dssp HHHHTTSCSSCEEEECCCSSS-CCBHHHHHHHH-HHHHHHHHTTCEEEEEECCCCTT--T-CC----HHHHHHHHHHHHH
T ss_pred HHhhcCCcCceEEEeCCCCCC-CccHHHHHHHH-HHHHHHHHcCCEEEEEECcCCcc--c-cc----HHHHHHHHHHHHH
Confidence 4456654322444 667788 89999999985 466 5566788888888776421 2 22 3445567888888
Q ss_pred cCCCCCceEEEeccccc
Q 020745 155 CGFDVTKTFIFSDFDYV 171 (322)
Q Consensus 155 ~G~dp~kt~I~~ns~~~ 171 (322)
+|++++.. ++.||+..
T Consensus 128 LGl~wde~-~~~qSer~ 143 (851)
T 2hz7_A 128 LGLDWGEH-FYYASDYF 143 (851)
T ss_dssp HTCCCTTC-EEEGGGGH
T ss_pred cCCCCCCC-cccHhhhH
Confidence 99998543 67888875
No 50
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=93.72 E-value=0.19 Score=50.00 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=48.2
Q ss_pred HhCCceEEEEe-eccCCCCcchhhhHHHH---HHHHHHHhCCceEEEEeeCcc-c--ccc---cC-CCHHH-HHHHHHHH
Q 020745 81 EKGEKFYLYTG-RGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE-K--CMW---KN-LSVEE-SQRLAREN 148 (322)
Q Consensus 81 ~~~~~~~vytG-~~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~IaD~~-~--~l~---r~-~~~e~-i~~~~~~~ 148 (322)
++.++|+|-|. -=++| .+||||+.... .+.++++.-|..|...-|.++ + ... +. .+.++ +.++..+.
T Consensus 6 ~~~k~f~Ittp~pY~nG-~lHiGHa~~~~~~Dii~Ry~r~~G~~v~~v~G~D~hG~~ie~~a~k~g~~~~e~~~~~~~~~ 84 (542)
T 3u1f_A 6 KVEKVFFVTSPIYYVNA-APHIGHVYSTLITDVIGRYHRVKGERVFALTGTDEHGQKVAEAAKQKQVSPYDFTTAVAGEF 84 (542)
T ss_dssp -CCCCEEEEEEEEECSS-CCCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEECCSHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCCEEEeCCCCCCCC-chhhHHHHHHHHHHHHHHHHHhcCCCccccCccCcChHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45577777776 46788 89999988753 333344444666555555444 3 111 12 56554 45566677
Q ss_pred HHHHHHcCCCCC
Q 020745 149 AKDIIACGFDVT 160 (322)
Q Consensus 149 ~~~iiA~G~dp~ 160 (322)
.+++.++|++.+
T Consensus 85 ~~~~~~lgi~~D 96 (542)
T 3u1f_A 85 KKCFEQMDYSID 96 (542)
T ss_dssp HHHHHHHTCCCS
T ss_pred HHHHHHhCCccC
Confidence 778888898764
No 51
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=92.04 E-value=0.039 Score=54.64 Aligned_cols=62 Identities=21% Similarity=0.292 Sum_probs=39.4
Q ss_pred ccccccChhhHHHHHHHHHHHhCCCCcee--eecccccC-CCCCCCcCCCCCCCCeeecCCCHHHH
Q 020745 234 LIPCAIDQDPYFRMTRDVAPRIGYHKPAL--IESSFFPA-LQGETGKMSASDPNSAIYVTDSAKAI 296 (322)
Q Consensus 234 lvp~G~DQd~~~~ltrdla~k~~~~kp~~--l~~~~lp~-L~G~~~KMSkS~p~~aI~L~D~p~~i 296 (322)
+-.+|.||..|+.....+++.+|.+.+.. +.+-++.. -+|.+.|||||. +|.|++.|=-+++
T Consensus 239 Iyv~G~dq~~~f~~l~~~l~~lG~~~~~~~h~~~g~V~l~~dG~~~KMSKr~-Gn~v~l~dll~~~ 303 (464)
T 3fnr_A 239 INIWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRA-GNFILMSDVVDEI 303 (464)
T ss_dssp EEEEEGGGGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---C-CSSCBHHHHHHHH
T ss_pred EEEecCcHHHHHHHHHHHHHHcCCCccceEEEEeeeEEecCCCcccCCcCcC-CCCCCHHHHHhhc
Confidence 33689999999998888999999865422 22334421 244335999998 8999887643333
No 52
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=89.78 E-value=0.16 Score=50.09 Aligned_cols=74 Identities=18% Similarity=0.060 Sum_probs=42.1
Q ss_pred EEEEeec--cCCCCcchhhhHHHH---HHHHHHHhCCceEEEEee-Cccccc-----cc-CCCHHH-HHHHHHHHHHHHH
Q 020745 87 YLYTGRG--PSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKCM-----WK-NLSVEE-SQRLARENAKDII 153 (322)
Q Consensus 87 ~vytG~~--PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~Ia-D~~~~l-----~r-~~~~e~-i~~~~~~~~~~ii 153 (322)
++.+|-= ||| .+||||+...+ .+.++++..|..|....| |.|+.- .+ ..++++ +.++..+..+++.
T Consensus 7 ~~i~~p~py~ng-~lHiGH~~~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 85 (497)
T 2csx_A 7 FYVTTPIYYVND-VPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAEELGISPKELVDRNAERFKKLWE 85 (497)
T ss_dssp EEEEEEEEETTS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHHHSSSCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCC-ccchhhHHHHHHHHHHHHHHHhcCCceeeecccCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3445544 568 89999988753 333344444665544332 433311 11 144544 4445566777888
Q ss_pred HcCCCCCc
Q 020745 154 ACGFDVTK 161 (322)
Q Consensus 154 A~G~dp~k 161 (322)
++|++++.
T Consensus 86 ~lgi~~d~ 93 (497)
T 2csx_A 86 FLKIEYTK 93 (497)
T ss_dssp HTTCCCSE
T ss_pred HhCCcCCC
Confidence 99998763
No 53
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=88.79 E-value=1.3 Score=43.63 Aligned_cols=54 Identities=15% Similarity=0.176 Sum_probs=31.8
Q ss_pred ccccccChhhH-HHHHHHHHHHhCCCCce-eeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 234 LIPCAIDQDPY-FRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 234 lvp~G~DQd~~-~~ltrdla~k~~~~kp~-~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
+...|.||..+ ..+-.....-+|.+.|. .+++-++.. + |+|||||. +|.|.+.|
T Consensus 253 i~~~G~D~~~~H~~~~~a~l~~~g~~~~~~~~~~G~v~~-~--G~KMSKS~-GN~i~~~d 308 (497)
T 2csx_A 253 LHLVGKDILRFHTVYWPAFLMSLGYELPKKVFAHGWWTV-E--GKKMSKTL-GNVVDPYE 308 (497)
T ss_dssp CEEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEES-S--SSBCCTTT-TCCCCHHH
T ss_pred EEEeecchhHhHHHHHHHHHHHcCCCCCcEEEECcEEEe-C--CceeCCcC-CCCCCHHH
Confidence 34689998762 22211222345665443 344555543 4 48999999 89998654
No 54
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=88.68 E-value=1.1 Score=44.79 Aligned_cols=77 Identities=14% Similarity=0.224 Sum_probs=44.1
Q ss_pred CceEEEEe-eccCCCCcchhhhHHHH---HHHHHHHhCCceEEEE-eeCcccc--cc---c-CCCHHHH-HHHHHHHHHH
Q 020745 84 EKFYLYTG-RGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ-LTDDEKC--MW---K-NLSVEES-QRLARENAKD 151 (322)
Q Consensus 84 ~~~~vytG-~~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~-IaD~~~~--l~---r-~~~~e~i-~~~~~~~~~~ 151 (322)
+++++.++ --||| .+||||+...+ .+.++++..|..|... -.|.++. .. + ..+++++ .++..+..++
T Consensus 18 ~~~~v~~~~py~ng-~lHiGH~r~~v~~D~laR~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 96 (560)
T 3h99_A 18 KKILVTCASPYANG-SIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTD 96 (560)
T ss_dssp CEEEEEECCCBTTS-CCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CcEEEeCCCCCCCC-CcchhhHHHHHHHHHHHHHHHHcCCeEEEeeeecCcCcHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 45555555 44558 89999988754 2333333446665544 3454531 11 1 2555553 4444566777
Q ss_pred HHHcCCCCCc
Q 020745 152 IIACGFDVTK 161 (322)
Q Consensus 152 iiA~G~dp~k 161 (322)
+.++|++.+.
T Consensus 97 ~~~lgi~~d~ 106 (560)
T 3h99_A 97 FAGFNISYDN 106 (560)
T ss_dssp HHHTTCCCSE
T ss_pred HHHcCCCCCC
Confidence 8889998764
No 55
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=88.55 E-value=0.23 Score=48.88 Aligned_cols=73 Identities=12% Similarity=0.050 Sum_probs=41.1
Q ss_pred EEEEeecc--CCCCcchhhhHHHH---HHHHHHHhCCceEEEEee-Ccccc-c----cc-CCCHHH-HHHHHHHHHHHHH
Q 020745 87 YLYTGRGP--SSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKC-M----WK-NLSVEE-SQRLARENAKDII 153 (322)
Q Consensus 87 ~vytG~~P--Sg~slHlGhli~~~---~~~~lQ~~~g~~v~I~Ia-D~~~~-l----~r-~~~~e~-i~~~~~~~~~~ii 153 (322)
+..||-=| +| .+||||+...+ .+.++++..|..|....| |.++. . .+ ..++.+ +.++..+..+++.
T Consensus 5 ~~i~~p~py~~g-~lHiGH~r~~~~~D~~~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~~~ 83 (500)
T 2d5b_A 5 FYVTTPIYYVNA-EPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQAAGEDPKAFVDRVSGRFKRAWD 83 (500)
T ss_dssp EEEECCCEETTS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCCC-CcchhhHHHHHHHHHHHHHHHcCCCceeeecccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45556555 78 89999988753 333344445666555433 43321 1 01 144444 3334456667788
Q ss_pred HcCCCCC
Q 020745 154 ACGFDVT 160 (322)
Q Consensus 154 A~G~dp~ 160 (322)
++|++++
T Consensus 84 ~lgi~~d 90 (500)
T 2d5b_A 84 LLGIAYD 90 (500)
T ss_dssp HTTCCCS
T ss_pred HhCCcCC
Confidence 8999876
No 56
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=87.94 E-value=1.5 Score=45.58 Aligned_cols=77 Identities=12% Similarity=0.100 Sum_probs=48.1
Q ss_pred CceEEEEee-ccCCCCcchhhhHH-H---HHHHHHHHhCCceEEEEee-Cccccc--c---c-CCCHHH-HHHHHHHHHH
Q 020745 84 EKFYLYTGR-GPSSEALHLGHLVP-F---MFTKYLQDAFKVPLVIQLT-DDEKCM--W---K-NLSVEE-SQRLARENAK 150 (322)
Q Consensus 84 ~~~~vytG~-~PSg~slHlGhli~-~---~~~~~lQ~~~g~~v~I~Ia-D~~~~l--~---r-~~~~e~-i~~~~~~~~~ 150 (322)
++++|.+++ -|+| .+||||+.. . ..+.++++.-|..+....| |.|+.- . + ..++.+ +.++.....+
T Consensus 2 ~~~~itt~~Py~nG-~lHiGHa~~~~i~~DiiaRy~rm~G~~V~~v~G~D~hG~pie~~A~k~G~~p~e~~~~~~~~~~~ 80 (722)
T 1rqg_A 2 VRYMVTSALPYANG-PIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRALKEGRSPREIVDEFHEQIKI 80 (722)
T ss_dssp CEEEEEECCCBTTS-CCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCC-chhhchhhccHHHHHHHHHHHHhcCCceEecceeCCCCHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 467888887 6777 899999986 3 2444555555776666555 444421 1 1 255555 3445556667
Q ss_pred HHHHcCCCCCc
Q 020745 151 DIIACGFDVTK 161 (322)
Q Consensus 151 ~iiA~G~dp~k 161 (322)
++.++|++.+.
T Consensus 81 ~~~~lgis~D~ 91 (722)
T 1rqg_A 81 TFQRAKISFDF 91 (722)
T ss_dssp HHHHHTCCCSE
T ss_pred HHHHhCCCCCC
Confidence 77888987653
No 57
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=87.50 E-value=1.5 Score=43.11 Aligned_cols=55 Identities=13% Similarity=-0.059 Sum_probs=32.3
Q ss_pred ccccccChhhHHH-HHHHHHHHhCCCCce-eeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 234 LIPCAIDQDPYFR-MTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 234 lvp~G~DQd~~~~-ltrdla~k~~~~kp~-~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
+..+|.||..+.- .-.-.+.-+|.+.|. .+++-++..-+ |+|||||. +|.|.+.|
T Consensus 254 i~~~G~D~~~fh~~~~~a~~~~~g~~~~~~v~~~G~v~~~~--G~KMSKS~-GN~i~p~d 310 (500)
T 2d5b_A 254 WHLIGKDILKPHAVFWPTMLKAAGIPMYRHLNVGGFLLGPD--GRKMSKTL-GNVVDPFA 310 (500)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHHTCCCCSEEEEECCEECTT--SSCCCTTT-TCCCCHHH
T ss_pred EEEEeechhhhHHHHHHHHHHHcCCCCCcEEEECceEEeCC--CCcccccC-CCCCCHHH
Confidence 4468999877321 111122334665453 34555554324 58999999 89998654
No 58
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=86.50 E-value=0.23 Score=50.09 Aligned_cols=76 Identities=16% Similarity=0.197 Sum_probs=42.9
Q ss_pred CCceEEEEee-ccCCCCcchhhhHHHH----HHHHHHHhCCceEE-EEeeCccccc--c---c-CCCHHHH-HHHHHHHH
Q 020745 83 GEKFYLYTGR-GPSSEALHLGHLVPFM----FTKYLQDAFKVPLV-IQLTDDEKCM--W---K-NLSVEES-QRLARENA 149 (322)
Q Consensus 83 ~~~~~vytG~-~PSg~slHlGhli~~~----~~~~lQ~~~g~~v~-I~IaD~~~~l--~---r-~~~~e~i-~~~~~~~~ 149 (322)
+++++|-+.. -||| .+||||+...+ +.+++... |..|. +.=.|.++.. . + ..+++++ .++..+..
T Consensus 25 ~~~~~i~~~~py~ng-~lHiGH~r~~v~~D~laR~~r~~-G~~V~~~~g~dd~G~ki~~~a~~~g~~p~~~~~~~~~~~~ 102 (564)
T 3kfl_A 25 QKVFFATTPIYYVNA-SPHIGHVYSTLIVDVLGRYHRVK-GEEVFVMTGTDEHGQKVAEAAAKQGVSPMDFTTSVSSEFK 102 (564)
T ss_dssp CCCEEEEEEEEECSS-CCCHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEECCSHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCEEEeCCCCCCCC-CCCcchhHHHHHHHHHHHHHHHc-CCcEEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4555554432 4778 89999987654 23444444 54444 4445655421 1 1 1555553 44445566
Q ss_pred HHHHHcCCCCC
Q 020745 150 KDIIACGFDVT 160 (322)
Q Consensus 150 ~~iiA~G~dp~ 160 (322)
+++.++|+..+
T Consensus 103 ~~~~~lgi~~D 113 (564)
T 3kfl_A 103 QCFQEMNYDMN 113 (564)
T ss_dssp HHHHHTTCCCS
T ss_pred HHHHHcCCCCC
Confidence 67778888776
No 59
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=85.84 E-value=0.22 Score=51.05 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=41.0
Q ss_pred cccccccChhhHHHHHHHHHHHhCCCC-ceee-e--cccccCCCCCCCcCCCCCCC--CeeecCCCHHH
Q 020745 233 CLIPCAIDQDPYFRMTRDVAPRIGYHK-PALI-E--SSFFPALQGETGKMSASDPN--SAIYVTDSAKA 295 (322)
Q Consensus 233 ~lvp~G~DQd~~~~ltrdla~k~~~~k-p~~l-~--~~~lp~L~G~~~KMSkS~p~--~aI~L~D~p~~ 295 (322)
++--.|.+|+.|+.-...+++.+|++. +.-+ | +-++. +. ++|||||. + |.|.|.|=-++
T Consensus 379 ~IyV~g~~q~~~~~~l~~~l~~lG~~~~~~~~~h~~~g~V~-~~--~~KMSkr~-G~~n~v~l~dLl~e 443 (629)
T 2zue_A 379 VINVIGAEQKHPQLAIKYALQLLGFEDAAANLYHLAYEHVE-RP--EGKFSGRK-GTWVGFTVDEVIQE 443 (629)
T ss_dssp EEEEEEGGGHHHHHHHHHHHHHTTCHHHHHTEEEEEECCEE-BT--TBCCCTTT-TTTTTCBHHHHHHH
T ss_pred EEEEEeCcHhhHHHHHHHHHHHcCCCCCCCeEEEEEeeeEE-cC--CCcccCCC-CCCCeeeHHHHHHH
Confidence 333589999999988899999999854 2112 2 23333 33 48999998 8 89988764444
No 60
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=84.75 E-value=3.9 Score=40.95 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=31.4
Q ss_pred ccccccChhhHHHHH-HHHHHHhCCCCcee-eecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 234 LIPCAIDQDPYFRMT-RDVAPRIGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 234 lvp~G~DQd~~~~lt-rdla~k~~~~kp~~-l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
+..+|.||..+.-+- --+..-+|.+.|.. +.+-++ ... |+|||||. +|.|++.|
T Consensus 297 v~~~GkDii~FH~~~wpa~L~a~g~~~~~~v~~hg~v-~~~--G~KMSKS~-GNvV~p~d 352 (564)
T 3kfl_A 297 VHVVGKDILKFHAIYWPAFLMSAELPLPERLVSHGWW-TKD--HKKISKSL-GNAFDPVE 352 (564)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHHTTCCCCSCEEEECCE-EET--TEECCTTT-TCCCCHHH
T ss_pred eEEEeecccchHHHHHHHHHHhCCCCCCcEEEEcccE-eeC--CccccccC-CCCCCHHH
Confidence 346899998843221 01112245554433 334555 455 48999999 89997654
No 61
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=84.09 E-value=0.5 Score=49.72 Aligned_cols=54 Identities=24% Similarity=0.267 Sum_probs=30.6
Q ss_pred cccccChhh-HHHHHHHHHHHh-CCCCc-eeeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 235 IPCAIDQDP-YFRMTRDVAPRI-GYHKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 235 vp~G~DQd~-~~~ltrdla~k~-~~~kp-~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
...|.||.. |+........-+ +.+.+ ..+.+-++...+| +|||||. +|.|.+.|
T Consensus 548 ~~~G~D~~r~w~~~~~~~~~~~~~~~pf~~v~~hg~vl~~~G--~KMSKS~-GNvV~p~d 604 (821)
T 1ile_A 548 IAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLILDEKG--QKMSKSK-GNVVDPWD 604 (821)
T ss_dssp EEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCEECTTS--SCCCTTT-TCCCCHHH
T ss_pred ccchhhhhccHHHHHHHHHHHhcCCCCcceEEEEeeEECCCC--CCCCccC-CCCCCHHH
Confidence 357888864 543333332222 33222 2334555555554 8999999 88887643
No 62
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=83.69 E-value=2.4 Score=45.08 Aligned_cols=77 Identities=19% Similarity=0.209 Sum_probs=46.6
Q ss_pred CCceEEEEee-ccCCCCcchhhhHHHH---HHHHHHHhCCceEEEEee-Cccccc-----cc-CCCHHH-HHHHHHHHHH
Q 020745 83 GEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKCM-----WK-NLSVEE-SQRLARENAK 150 (322)
Q Consensus 83 ~~~~~vytG~-~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~Ia-D~~~~l-----~r-~~~~e~-i~~~~~~~~~ 150 (322)
++++++++++ -||| .|||||..... .+.++++.-|..|....| |.++.- .+ ..+..+ ..++...+.+
T Consensus 52 ~~~~~v~~~~PypnG-~lHiGHa~~~~~~DvlaRy~rm~G~~V~~~~G~D~~Glpie~~a~~~g~~p~~~~~~~i~~~~~ 130 (880)
T 4arc_A 52 KEKYYCLSMLPYPSG-RLHMGHVRNYTIGDVIARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTYDNIAYMKN 130 (880)
T ss_dssp SCEEEEEECCCCCCS-SCCHHHHHHHHHHHHHHHHHHHTTCEEECCCEECCCSTHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCCCCC-CcchhhhHHHHHHHHHHHHHHHcCCceEEecCccccCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4678888886 6677 89999988753 233444445766655443 444311 11 244433 3444555666
Q ss_pred HHHHcCCCCC
Q 020745 151 DIIACGFDVT 160 (322)
Q Consensus 151 ~iiA~G~dp~ 160 (322)
++.++|+..+
T Consensus 131 ~l~~LGis~D 140 (880)
T 4arc_A 131 QLKMLGFGYD 140 (880)
T ss_dssp HHHHTTCCCC
T ss_pred HHHHhCCCcC
Confidence 7788998766
No 63
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=83.61 E-value=0.19 Score=51.00 Aligned_cols=56 Identities=16% Similarity=0.124 Sum_probs=35.8
Q ss_pred ccccChhhHHHHHHHHHHHhCCCCc--eeee--cccccCCCCCCCcCCCCCCCCeeecCCCHHH
Q 020745 236 PCAIDQDPYFRMTRDVAPRIGYHKP--ALIE--SSFFPALQGETGKMSASDPNSAIYVTDSAKA 295 (322)
Q Consensus 236 p~G~DQd~~~~ltrdla~k~~~~kp--~~l~--~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~ 295 (322)
-.|.||..|+.....+++.+|++.+ ...| +-++. +. ++|||||. +|.|.+.|=-++
T Consensus 352 V~g~~h~~~~~~~~~~~~alG~~~~~~~~~H~~~g~v~-~~--g~KMSKr~-Gn~v~l~dll~~ 411 (592)
T 1iq0_A 352 VVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVL-LE--GRQMSGRK-GLAVSVDEVLEE 411 (592)
T ss_dssp EEESSSCCCHHHHHHHHHHTTCHHHHTTEEEEEECCEE-ET--TBCSCC-----CCBHHHHHHH
T ss_pred EEeccHHHHHHHHHHHHHHcCCCCCCCcEEEEEeeEEE-cC--CCcccCCC-CCccCHHHHHHH
Confidence 5899999999988999999997542 2222 23343 34 48999998 889987653333
No 64
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=83.46 E-value=3.4 Score=40.78 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=42.5
Q ss_pred CceEEEEee-ccCCCCcchhhhHHHH---HHHHHHHhCCceEEEEee-Ccccc-c----cc-CCCHHH-HHHHHHHHHHH
Q 020745 84 EKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKC-M----WK-NLSVEE-SQRLARENAKD 151 (322)
Q Consensus 84 ~~~~vytG~-~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~Ia-D~~~~-l----~r-~~~~e~-i~~~~~~~~~~ 151 (322)
+.+++.|.+ -|+| .+||||+...+ .+.++++..|..|....| |.++. . .+ ..++.+ ++++..+..++
T Consensus 12 ~~~~i~t~~P~~ng-~lHiGHa~~~i~~D~l~R~~r~~G~~V~~~~g~D~~G~~i~~~a~~~g~~~~~~~~~~~~~~~~~ 90 (524)
T 2x1l_A 12 EPFYITTAIAYPNG-VPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETAAKEGIPAAELARRNSDVFQRL 90 (524)
T ss_dssp CEEEEEECCBCCSS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCEEEeeCCCCCCC-CcccchhHHHHHHHHHHHHHHhcCCceeeeCCcCcccHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 345555554 4577 89999988753 333344445666555433 43331 1 01 144544 34455566777
Q ss_pred HHHcCCCCC
Q 020745 152 IIACGFDVT 160 (322)
Q Consensus 152 iiA~G~dp~ 160 (322)
+.++|+.++
T Consensus 91 ~~~lgi~~d 99 (524)
T 2x1l_A 91 QEKLNISFD 99 (524)
T ss_dssp HHHTTCCCS
T ss_pred HHHcCCcCC
Confidence 788898765
No 65
>3u1f_A Methionyl-tRNA synthetase; aminoacyl-tRNA synthetase, AARS, metrs, parasite, protein-IN complex, rossmann-fold, translation; HET: 392; 2.20A {Trypanosoma brucei} PDB: 3u1e_A* 3u1g_A* 3u20_A* 4eg1_A 4eg3_A* 4eg6_A* 4eg8_A* 4eg5_A* 3tun_A* 3u1z_A* 4eg4_A* 4eg7_A* 4ega_A*
Probab=82.14 E-value=0.49 Score=47.03 Aligned_cols=49 Identities=12% Similarity=0.120 Sum_probs=27.8
Q ss_pred ccccChhhHHHH---HHHHHHHhCCCCcee-eecccccCCCCCCCcCCCCCCCCeeecC
Q 020745 236 PCAIDQDPYFRM---TRDVAPRIGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVT 290 (322)
Q Consensus 236 p~G~DQd~~~~l---trdla~k~~~~kp~~-l~~~~lp~L~G~~~KMSkS~p~~aI~L~ 290 (322)
..|.||-.+..+ ++-++. |.+.|.. +++-++- .. |+|||||. +|.|...
T Consensus 283 ~~G~D~~~fh~~~~~a~l~~~--g~~~~~~v~~hg~l~-~~--G~KMSKSl-GNvi~p~ 335 (542)
T 3u1f_A 283 VIGKDILKFHAIYWPAFLLSA--GLPLPKKIVAHGWWT-KD--RKKISKSL-GNVFDPV 335 (542)
T ss_dssp EEEGGGHHHHHTHHHHHHHHH--TCCCCSCEEEECCCE-ET--TBCCBTTT-TBCCCHH
T ss_pred EecccccccccchhHHHHHhh--cccccceecccccee-cC--Cceecccc-CCCCChh
Confidence 579998665322 233333 4443322 2343432 33 59999999 8888644
No 66
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=81.46 E-value=0.4 Score=47.56 Aligned_cols=53 Identities=13% Similarity=0.097 Sum_probs=29.8
Q ss_pred cccccChhhHHHH-HHHHHHHhCCCCce-eeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 235 IPCAIDQDPYFRM-TRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 235 vp~G~DQd~~~~l-trdla~k~~~~kp~-~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
..+|.||-.+.-+ -.-.+..+|.+.|. .+.+-++.. + |+|||||. +|.|.+.|
T Consensus 269 ~~~G~D~~~fh~~~~~a~l~~~g~~~~~~v~~hG~v~~-~--G~KMSKS~-GN~v~p~d 323 (524)
T 2x1l_A 269 HMIGKDIIRFHTVYWPAFLMSAGLPLPKRIFAHGWLLN-R--GEKMSKSI-GNVVDPVN 323 (524)
T ss_dssp EEEEGGGHHHHHTHHHHHHHHHTCCCCSCEEEECCEEE-C--SCSEETTT-EESSCHHH
T ss_pred EEEeechhHhHHHHHHHHHHHCCCCCCcEEEECcEEEe-C--CcccCCcC-CCCCCHHH
Confidence 3689998753221 11222334654442 233444433 4 58999999 88888754
No 67
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=81.40 E-value=5.8 Score=39.32 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=42.2
Q ss_pred CceEEEEee-ccCCCCcchhhhHHHH---HHHHHHHhCCceEEE-EeeCcccc-cc-----cCCCHHHH-HHHHHHHHHH
Q 020745 84 EKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVI-QLTDDEKC-MW-----KNLSVEES-QRLARENAKD 151 (322)
Q Consensus 84 ~~~~vytG~-~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I-~IaD~~~~-l~-----r~~~~e~i-~~~~~~~~~~ 151 (322)
+++++.+.. -||| .+||||+.+.+ .+.++++..|..|.. .=.|+++. +. ...+++++ .++..+..++
T Consensus 25 ~~~~i~~p~pypng-~lHiGH~r~~v~~D~laR~lr~~G~~V~~~~g~dd~g~ki~~~a~~~g~~~~~~~~~~~~~~~~~ 103 (536)
T 4dlp_A 25 EKYYITTAIAYPNG-KPHIGHAYELIATDAMARFQRLNGMDVYFLTGTDEHGIKMLQSARKEGITPRDLADRNTSAFRRM 103 (536)
T ss_dssp CEEEEEECCBCCSS-CCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred CCEEEeCCCCCCCC-CcCcchhHHHHHHHHHHHHHHhcCCcEEEecCcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 455544442 3458 89999987754 233344444665544 33455531 11 11455543 3444566667
Q ss_pred HHHcCCCCC
Q 020745 152 IIACGFDVT 160 (322)
Q Consensus 152 iiA~G~dp~ 160 (322)
+.++|+..+
T Consensus 104 l~~lgi~~d 112 (536)
T 4dlp_A 104 AEVLNSSND 112 (536)
T ss_dssp HHHTTCCCS
T ss_pred HHHcCCCCC
Confidence 778899876
No 68
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=81.04 E-value=4.1 Score=39.88 Aligned_cols=72 Identities=25% Similarity=0.230 Sum_probs=40.9
Q ss_pred eEEE-EeeccCCCCcchhhhHHHH----HHHHHHHhCCceEEEE--eeCcc-cccc----cCCCHHHHH-HHHHHHHHHH
Q 020745 86 FYLY-TGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDDE-KCMW----KNLSVEESQ-RLARENAKDI 152 (322)
Q Consensus 86 ~~vy-tG~~PSg~slHlGhli~~~----~~~~lQ~~~g~~v~I~--IaD~~-~~l~----r~~~~e~i~-~~~~~~~~~i 152 (322)
+.+| ||-=|.+ .+||||+-+.+ +.++++.. |..|... ++|.- +... ...++.++. .+..+..+++
T Consensus 23 v~~yv~gPt~y~-~~HiGHar~~v~~D~l~R~lr~~-G~~V~~v~~~tD~d~ki~~~A~~~g~~~~~~~~~~~~~f~~~~ 100 (461)
T 1li5_A 23 VGMYVCGITVYD-LCHIGHGRTFVAFDVVARYLRFL-GYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDF 100 (461)
T ss_dssp EEEEECCCBSSS-CCBHHHHHHHHHHHHHHHHHHHH-TCEEEEEECBBCCSHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred eeEEEcCCcCCC-CCcccccHHHHHHHHHHHHHHHc-CCCEEEeecCCCCcHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 4444 4444448 89999987653 33445544 5444443 56654 2221 125666544 4445677778
Q ss_pred HHcCCCC
Q 020745 153 IACGFDV 159 (322)
Q Consensus 153 iA~G~dp 159 (322)
.++|+.+
T Consensus 101 ~~LgI~~ 107 (461)
T 1li5_A 101 DALNILR 107 (461)
T ss_dssp HHTTCCC
T ss_pred HHcCCCC
Confidence 8899975
No 69
>4dlp_A Aminoacyl-tRNA synthetase, class I:aminoacyl-tRNA synthetase, class IA:methionyl-tRNA...; structural genomics; 2.65A {Brucella melitensis biovar abortus 230ORGANISM_TAXID}
Probab=80.15 E-value=0.57 Score=46.72 Aligned_cols=52 Identities=15% Similarity=0.033 Sum_probs=20.4
Q ss_pred ccccccChhhHHH---HHHHHHHHhCCCCcee-eecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 234 LIPCAIDQDPYFR---MTRDVAPRIGYHKPAL-IESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 234 lvp~G~DQd~~~~---ltrdla~k~~~~kp~~-l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
+...|.||..+.- .++-.+ +|.+.|.. +.+-++. +. |+|||||. +|.|++.|
T Consensus 279 v~~~G~D~~~fh~~~~~a~l~a--~g~~~~~~v~~hg~v~-~~--G~KMSKS~-GNvi~p~d 334 (536)
T 4dlp_A 279 AHIIGKDISRFHAVYWPAFLMS--AQLPLPKRVFAHGFLF-NR--GEKMSKSV-GNVIDPFE 334 (536)
T ss_dssp EEEEEGGGHHHHHTHHHHHHHH--TTCCCCSCEEEECCEE-C---------------CCHHH
T ss_pred eEEeechHHHHHHHHHHHHHHH--CCCCCCcEEEeeeeEe-eC--CceecccC-CCCCCHHH
Confidence 3468999887321 123223 45544432 3345553 45 48999999 88997654
No 70
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, ligas binding, nucleotide-binding, protein biosynthesis; HET: CIT; 1.40A {Escherichia coli} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=80.13 E-value=0.64 Score=46.59 Aligned_cols=52 Identities=15% Similarity=0.192 Sum_probs=29.8
Q ss_pred ccccChhhHHHHH-HHHHHHhCCCCceee-ecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 236 PCAIDQDPYFRMT-RDVAPRIGYHKPALI-ESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 236 p~G~DQd~~~~lt-rdla~k~~~~kp~~l-~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
.+|.||..++-+- --+..-++.+.|..+ .+-++.. . |+|||||. +|.|++.|
T Consensus 305 ~~G~D~~~fh~~~~~a~l~~~g~~~p~~v~~hg~v~~-~--G~KMSKS~-GNvv~p~d 358 (560)
T 3h99_A 305 FIGKDIVYFLSLFWPAMLEGSNFRKPSNLFVHGYVTV-N--GAKMSKSR-GTFIKAST 358 (560)
T ss_dssp EEEGGGHHHHHTHHHHHHHHTTBCCCSEEEEECCEEE-T--TEECCTTT-TCCCBHHH
T ss_pred EeccccchhHHHHHHHHHHhCCCCCCcEEEEEeEEEe-C--CeeccccC-CCcCCHHH
Confidence 4799987732111 112233566656322 2344433 5 48999999 88887654
No 71
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=79.91 E-value=4.8 Score=38.71 Aligned_cols=72 Identities=19% Similarity=0.208 Sum_probs=41.1
Q ss_pred EEEEeeccCCCCcchhhhHHHH---H-HHHHHHhCCceEEE-EeeCccc--ccc---c-CCCHHHH-HHHHHHHHHHHHH
Q 020745 87 YLYTGRGPSSEALHLGHLVPFM---F-TKYLQDAFKVPLVI-QLTDDEK--CMW---K-NLSVEES-QRLARENAKDIIA 154 (322)
Q Consensus 87 ~vytG~~PSg~slHlGhli~~~---~-~~~lQ~~~g~~v~I-~IaD~~~--~l~---r-~~~~e~i-~~~~~~~~~~iiA 154 (322)
..+||-=|.| .+||||+.+.+ . .+++... |..|.. .-.|++. ... + ..++.++ .++..+..+++.+
T Consensus 42 ~y~~gPt~yg-~~HiGHar~~v~~DvlaR~lr~~-G~~V~~~~~~dd~g~ki~~~A~~~g~~~~~~~~~~~~~~~~~~~~ 119 (414)
T 3c8z_A 42 MYVCGITPYD-ATHLGHAATYLTFDLVHRLWLDA-GHTVQYVQNVTDVDDPLFERAERDGIDWRTLGDRETQLFREDMAA 119 (414)
T ss_dssp EEECCCCTTS-CCBHHHHHHHHHHHHHHHHHHHT-TCEEEEEEEECCSCHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCCcCCC-CcCccccHHHHHHHHHHHHHHHc-CCCEEeCCCCCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 3455666667 89999987653 3 3445444 655544 3345553 111 1 1455443 4445567777888
Q ss_pred cCCC-CC
Q 020745 155 CGFD-VT 160 (322)
Q Consensus 155 ~G~d-p~ 160 (322)
+|+. ++
T Consensus 120 Lgi~~~d 126 (414)
T 3c8z_A 120 LRVLPPH 126 (414)
T ss_dssp TTCCCCS
T ss_pred cCCCCCc
Confidence 9997 44
No 72
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=79.51 E-value=4.2 Score=39.97 Aligned_cols=75 Identities=20% Similarity=0.187 Sum_probs=44.4
Q ss_pred ceEE-EEeeccCCCCcchhhhHHHH----HHHHHHHhCCceEEEE--eeCcc-cccc---c-CCCHHHH-HHHHHHHHHH
Q 020745 85 KFYL-YTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDDE-KCMW---K-NLSVEES-QRLARENAKD 151 (322)
Q Consensus 85 ~~~v-ytG~~PSg~slHlGhli~~~----~~~~lQ~~~g~~v~I~--IaD~~-~~l~---r-~~~~e~i-~~~~~~~~~~ 151 (322)
++.+ +||-=|.+ .+||||+.+.+ +.+|++- .|..|... ++|.. +... + ..++.++ .++..+..++
T Consensus 25 ~v~~YvcGPtvy~-~~HIGHaR~~v~~Dvl~R~lr~-~Gy~V~~v~n~dD~ddKIi~~A~~~g~~~~e~a~~~~~~f~~d 102 (462)
T 3tqo_A 25 KVKLYVCGMTVYD-YMHIGHGRSWIIFDMVVRYLRM-RGYEVTFVRNITDIDDKIIKRAGENKESPAALAERFIQILHED 102 (462)
T ss_dssp EEEEEECCCBTTS-CCBHHHHHHHHHHHHHHHHHHH-TTCEEEEEECBBCCCHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCcCCC-CCchhhhHHHHHHHHHHHHHHH-cCCceEEecCcCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3444 46888887 89999987754 2344554 46554443 33332 2221 1 2555554 4455677778
Q ss_pred HHHcCCCCCc
Q 020745 152 IIACGFDVTK 161 (322)
Q Consensus 152 iiA~G~dp~k 161 (322)
+.++|+.++.
T Consensus 103 ~~~LgI~~d~ 112 (462)
T 3tqo_A 103 EKALRVLSPD 112 (462)
T ss_dssp HHHHTCCCCS
T ss_pred HHHcCCCCCc
Confidence 8889997643
No 73
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=79.10 E-value=6.4 Score=39.14 Aligned_cols=74 Identities=19% Similarity=0.186 Sum_probs=41.3
Q ss_pred eEEE-EeeccCCCCcchhhhHHHH----HHHHHHHhCCceEEEE--eeCc---------c--cccc---cC-CCHHH-HH
Q 020745 86 FYLY-TGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVIQ--LTDD---------E--KCMW---KN-LSVEE-SQ 142 (322)
Q Consensus 86 ~~vy-tG~~PSg~slHlGhli~~~----~~~~lQ~~~g~~v~I~--IaD~---------~--~~l~---r~-~~~e~-i~ 142 (322)
+.+| ||-=|.+ .+||||..+.+ +.||++-. |..|... |+|. | +... +. .++.+ +.
T Consensus 43 v~~YvcgPTvYg-~~HIGHar~~v~~Dvl~R~lr~~-Gy~V~~v~niTDvGhltG~~DehddKI~~~A~~~g~~~~e~a~ 120 (501)
T 3sp1_A 43 VKVYACGPTVYN-YAHIGNFRTYIFGDLLIKTLRFL-GYKVNYAMNITDIGHLTGDLDDGEDKVAKTAREKGLTVYEISE 120 (501)
T ss_dssp EEEEECCCBCSS-CCCHHHHHHHHHHHHHHHHHHHH-TCCEEEEEEEBCSCCC-------------------CCHHHHHH
T ss_pred ceEEeCCCcCCC-CcchhhhHHHHHHHHHHHHHHHc-CCceeEEeeecccccccCCCCCCCcHHHHHHHHcCCCHHHHHH
Confidence 3344 4544457 89999987643 34455543 5444443 5554 1 3222 12 56555 45
Q ss_pred HHHHHHHHHHHHcCCCCCc
Q 020745 143 RLARENAKDIIACGFDVTK 161 (322)
Q Consensus 143 ~~~~~~~~~iiA~G~dp~k 161 (322)
++..+..+++.++|+.++.
T Consensus 121 ~~~~~f~~d~~~Lgi~~d~ 139 (501)
T 3sp1_A 121 FFTEAFFNDCRKLNIVYPD 139 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHHHHHcCCCCCC
Confidence 5666777888899998764
No 74
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=77.81 E-value=0.88 Score=43.97 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=18.9
Q ss_pred cccccChhh-HHHHHHHHHHHh-CCCCce--eeecccccCCCCCCCcCCCCCCCCeeecC
Q 020745 235 IPCAIDQDP-YFRMTRDVAPRI-GYHKPA--LIESSFFPALQGETGKMSASDPNSAIYVT 290 (322)
Q Consensus 235 vp~G~DQd~-~~~ltrdla~k~-~~~kp~--~l~~~~lp~L~G~~~KMSkS~p~~aI~L~ 290 (322)
..+|.|+-. |.....-...-+ +.+.+. .+|+-++. +.| +|||||. +|.|++.
T Consensus 248 ~~~G~D~~~~H~~~~~a~~~a~~g~~~~~~~~~h~g~v~-~~G--~KMSKS~-GN~v~~~ 303 (414)
T 3c8z_A 248 QGGGSDLIFPHHEYSAAHAESVTGERRFARHYVHTGMIG-WDG--HKMSKSR-GNLVLVS 303 (414)
T ss_dssp EEEEGGGTTTHHHHHHHHHHHHHCCSCSEEEEEEECCBC-----------------CBHH
T ss_pred EEeccccccHHHHHHHHHHHHhcCCCCcCeEEEEcCEEe-cCC--eEccccc-CCcCCHH
Confidence 357888665 544433333333 553332 23434443 354 8999998 8888864
No 75
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=77.56 E-value=1.3 Score=47.22 Aligned_cols=53 Identities=28% Similarity=0.298 Sum_probs=30.5
Q ss_pred ccccccChhh-HH--HHHHHHHHHhCCCCc--eeeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 234 LIPCAIDQDP-YF--RMTRDVAPRIGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 234 lvp~G~DQd~-~~--~ltrdla~k~~~~kp--~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
+...|.||.. |+ .+...++ -.+. .| ..+.+-++...+ |+|||||. +|.|.+.|
T Consensus 551 l~~~G~D~~r~wf~~~l~~s~~-~~g~-~Pfk~v~~hG~V~d~~--G~KMSKSl-GNvV~P~d 608 (917)
T 1ffy_A 551 MYLEGSDQYRGWFNSSITTSVA-TRGV-SPYKFLLSHGFVMDGE--GKKMSKSL-GNVIVPDQ 608 (917)
T ss_dssp EEEEEGGGGTTHHHHHHHHHHH-HHSS-CSBSEEEEECCEECTT--SCCCCSSS-SCCCCHHH
T ss_pred EEEEEecccccHHHHHHHHHHH-hhCC-CcccceeEeeeEEcCC--CcCccccc-CCcCChHH
Confidence 3468999874 43 2234444 2343 33 223344554445 48999999 88887543
No 76
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=74.97 E-value=4.1 Score=43.19 Aligned_cols=47 Identities=15% Similarity=0.134 Sum_probs=31.4
Q ss_pred hCCceEEEEee-ccCCCCcchhhhHHHH---HHHHHHHhCCceEEEEeeCcc
Q 020745 82 KGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLTDDE 129 (322)
Q Consensus 82 ~~~~~~vytG~-~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~IaD~~ 129 (322)
.++++++++|. -||| .||+||.+... ++.++++.-|..+....|-++
T Consensus 32 ~~~~f~i~~ppPy~nG-~lHiGHa~~~~l~Dii~Ry~rm~G~~vl~~~G~D~ 82 (862)
T 1gax_A 32 GKPPFVIFMPPPNVTG-SLHMGHALDNSLQDALIRYKRMRGFEAVWLPGTDH 82 (862)
T ss_dssp CSCEEEEECCCCBSSS-CCCHHHHHHHHHHHHHHHHHHTTTSEEEEECEEBC
T ss_pred CCCcEEEEcCCCCCCC-CcchhhhHHHHHHHHHHHHHHhCCCccccccccCC
Confidence 34678888874 5687 89999988643 334455655777766655444
No 77
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=74.72 E-value=1.2 Score=43.84 Aligned_cols=60 Identities=17% Similarity=0.105 Sum_probs=32.1
Q ss_pred ccccChh-hHHHHH--HHHHHHhCCCCce-eeecccccCCCCCCCcCCCCCCCCeeecCC-----CHHHHHHHH
Q 020745 236 PCAIDQD-PYFRMT--RDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKI 300 (322)
Q Consensus 236 p~G~DQd-~~~~lt--rdla~k~~~~kp~-~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D-----~p~~i~~KI 300 (322)
.+|.|+- +|.... .-.|- .|.+.|. .+|+-++.. . |+|||||. +|.|.+.| .++.++-=+
T Consensus 225 ~gG~Dl~fpH~~~~~aq~~a~-~g~~~~~~~~h~g~v~~-~--G~KMSKS~-GN~v~~~dll~~~g~dalR~~l 293 (461)
T 1li5_A 225 GGGSDLMFPHHENEIAQSTCA-HDGQYVNYWMHSGMVMV-D--REKMSKSL-GNFFTVRDVLKYYDAETVRYFL 293 (461)
T ss_dssp ECBGGGTTTHHHHHHHHHHHH-SSSCCEEEECCBCCEEE-T--TBCCCGGG-TCCCBHHHHHTTSCHHHHHHHH
T ss_pred eccCccCchHHHHHHHHHHHh-cCCCCCcEEEEeeEEEE-C--CeEccccC-CCccChhHHhhhCCHHHHHHHH
Confidence 4677754 343222 22221 4554342 344455543 4 48999999 88888654 455554333
No 78
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=74.22 E-value=1.6 Score=46.38 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=30.7
Q ss_pred ccccccChhhHHHHHHHHHHH--hCCCCc--eeeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 234 LIPCAIDQDPYFRMTRDVAPR--IGYHKP--ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 234 lvp~G~DQd~~~~ltrdla~k--~~~~kp--~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
+...|.||..+ =.+|-++.- +....| ..+.+-++...+| +|||||. +|.|.+.|
T Consensus 484 ~~v~G~Dii~~-W~a~~~~~~~~~~g~~Pfk~v~~hG~vld~~G--~KMSKSl-GNvIdP~d 541 (862)
T 1gax_A 484 VLVTGYDILFL-WVSRMEVSGYHFMGERPFKTVLLHGLVLDEKG--QKMSKSK-GNVIDPLE 541 (862)
T ss_dssp CEEEEGGGTTT-THHHHHHHHHHHSSSCSBSEEEEECCEECTTS--CBCCTTT-TCCCCHHH
T ss_pred EEecCcccccc-HHHHHHHHHHHhcCCCcccEEEEeeeEEcCCC--CCccccC-CCCCCHHH
Confidence 34688887652 223333332 222234 2334555555565 8999999 88887654
No 79
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=73.08 E-value=5.8 Score=42.06 Aligned_cols=77 Identities=17% Similarity=0.160 Sum_probs=43.4
Q ss_pred CCceEEEEe-eccCCCCcchhhhHHHH---HHHHHHHhCCceEEEEee-Cccccc-----cc-CCCHH-HHHHHHHHHHH
Q 020745 83 GEKFYLYTG-RGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEKCM-----WK-NLSVE-ESQRLARENAK 150 (322)
Q Consensus 83 ~~~~~vytG-~~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~Ia-D~~~~l-----~r-~~~~e-~i~~~~~~~~~ 150 (322)
++++++++| --|+| .+||||..... .+.++++.-|..+....| |.|+.- .+ ..+.. -+.++.....+
T Consensus 32 ~~k~~v~~~~Py~nG-~lHiGHa~~~~~~Dvl~Ry~rm~G~~V~~~~G~D~~Glpie~~a~k~g~~~~~~~~~~~~~~~~ 110 (878)
T 2v0c_A 32 RGKQYVLVMFPYPSG-DLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKE 110 (878)
T ss_dssp --EEEEEECCCCCSS-CCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCCCCCC-CcchhhhHHHHHHHHHHHHHHhcCCceEeecccCcccHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 356888888 44567 89999988753 233333333666555443 433311 11 13443 34445556677
Q ss_pred HHHHcCCCCC
Q 020745 151 DIIACGFDVT 160 (322)
Q Consensus 151 ~iiA~G~dp~ 160 (322)
++.++|+..+
T Consensus 111 ~~~~LGi~~D 120 (878)
T 2v0c_A 111 SLRLMGILYD 120 (878)
T ss_dssp HHHHTTCCCC
T ss_pred HHHHhCCccC
Confidence 7788888654
No 80
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=68.69 E-value=1.7 Score=44.34 Aligned_cols=55 Identities=15% Similarity=0.226 Sum_probs=40.4
Q ss_pred ccccChhhHHHHHHHHHHHhCCCCce-eeecccccCCCCCCCcCCCCCCCCeeecCCCHHHH
Q 020745 236 PCAIDQDPYFRMTRDVAPRIGYHKPA-LIESSFFPALQGETGKMSASDPNSAIYVTDSAKAI 296 (322)
Q Consensus 236 p~G~DQd~~~~ltrdla~k~~~~kp~-~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i 296 (322)
.+|.+|+.|+.....+++.+|++.+. ..|..+ ++- .||||+. ++.|.|.|=-+++
T Consensus 370 V~g~~q~~~f~q~~~~~~~lG~~~~~~~~Hv~f--g~v---~kMSkR~-G~~v~L~dLlde~ 425 (607)
T 1f7u_A 370 VIASQQDLHAAQFFEILKQMGFEWAKDLQHVNF--GMV---QGMSTRK-GTVVFLDNILEET 425 (607)
T ss_dssp ECCGGGHHHHHHHHHHHHHTTCGGGGGEEEECC--CCE---ESCCGGG-TCCCBHHHHHHHH
T ss_pred EEcChHhhHHHHHHHHHHHcCCCcCcEEEEecc--ccc---ccccCCC-CCcccHHHHHHHH
Confidence 59999999999889999999986543 334343 222 3799998 8999887644444
No 81
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=66.24 E-value=2.5 Score=44.20 Aligned_cols=52 Identities=19% Similarity=0.115 Sum_probs=27.8
Q ss_pred ccccChhh-HHHHHHHHHHH-hCC-CCc-eeeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 236 PCAIDQDP-YFRMTRDVAPR-IGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 236 p~G~DQd~-~~~ltrdla~k-~~~-~kp-~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
.+|.||-. |....+-...- ++. +-| ..+++-++.. . |+|||||. +|.|.+.|
T Consensus 608 ~~G~D~~~~H~~~~~~~~~~~~~~~~~pk~v~~~G~v~~-~--G~KMSKS~-GNvv~p~d 663 (810)
T 1wkb_A 608 CSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-E--GQKMSKSK-GNVLNFID 663 (810)
T ss_dssp EEEGGGTTTHHHHHHHHHHHHSCGGGSCCEEEEECCEEE-T--TBCCCTTT-TCCCBHHH
T ss_pred eecccccccHHHHHHHHHHHHcCccccccEEEEEeEEEe-C--CeehhhcC-CCcCCHHH
Confidence 58999854 32222222222 221 112 2344444432 4 48999999 89998654
No 82
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=65.49 E-value=8.6 Score=40.98 Aligned_cols=47 Identities=21% Similarity=0.228 Sum_probs=30.1
Q ss_pred CCceEEEEee-ccCCCCcchhhhHHHH---HHHHHHHhCCceEEEEee-Cccc
Q 020745 83 GEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEK 130 (322)
Q Consensus 83 ~~~~~vytG~-~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~Ia-D~~~ 130 (322)
+++|++.+|. -||| .+||||.+... ++.++++.-|..+.-..| |-|+
T Consensus 47 ~~~f~i~~~pPY~nG-~lHiGHa~n~~~~Dii~Ry~rm~G~~v~~~~GwD~hG 98 (917)
T 1ffy_A 47 NETFILHDGPPYANG-NLHMGHALNKILKDFIVRYKTMQGFYAPYVPGWDTHG 98 (917)
T ss_dssp SCBCCEECCCCBSSS-CCCHHHHHHHHHHHHHHHHHHTTTCBCCCCCEEBCCS
T ss_pred CCceeeCCCCCCCCC-cchHHHHHHHHHHHHHHHHHHhCCCCCCCcccCchhh
Confidence 4678888888 6788 89999988743 333455554655444333 4444
No 83
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=64.80 E-value=3.3 Score=44.35 Aligned_cols=53 Identities=19% Similarity=0.098 Sum_probs=27.6
Q ss_pred cccccChhh-HHHHHHHHHHH-hCC-CCc-eeeecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 235 IPCAIDQDP-YFRMTRDVAPR-IGY-HKP-ALIESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 235 vp~G~DQd~-~~~ltrdla~k-~~~-~kp-~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
...|.||-. |....+-...- ++. +-| ..+++-++.. + |+|||||. +|.|.+.|
T Consensus 607 ~~~G~D~i~~H~~~~~~~~~a~~~~~~~pk~v~~~G~v~~-~--G~KMSKS~-GNvv~p~d 663 (967)
T 1wz2_A 607 RCSGKDLIPNHLTFFIFNHVAIFREEHWPKGIAVNGFGTL-E--GQKMSKSK-GNVLNFID 663 (967)
T ss_dssp EEEEGGGTTTHHHHHHHHHHHHSCSTTSCCCEEEECCEEE-S--SSCCCTTT-CCCCBHHH
T ss_pred EeeeeCcchhHHHHHHHHHHHHcCcccccceEEEeeEEee-C--CEEccccc-cCCCCHHH
Confidence 358999854 32222211121 221 112 2334444443 4 48999999 89988654
No 84
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=64.20 E-value=3.6 Score=43.21 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=31.5
Q ss_pred hCCceEEEEee-ccCCCCcchhhhHHHH---HHHHHHHhCCceEEEEee-Cccc
Q 020745 82 KGEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQLT-DDEK 130 (322)
Q Consensus 82 ~~~~~~vytG~-~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~Ia-D~~~ 130 (322)
.+++++++.|. -||| .|||||..... .+.++++.-|..+....| |.|+
T Consensus 36 ~~~~f~i~~~pPy~nG-~lHiGH~~~~~~~D~i~R~~rm~G~~v~~~~G~D~~G 88 (821)
T 1ile_A 36 GGPRYTVYEGPPTANG-LPHVGHAQARSYKDLFPRYKTMRGYYAPRRAGWDTHG 88 (821)
T ss_dssp TSCBCCBCCCCCCTTS-CCCTTHHHHHHHHHHHHHHHHHTTCBCCCEEEECCCH
T ss_pred CCCcEEEecCCCCCCC-CCchhhhHhHHHHHHHHHHHHhcCCcccccccccCCC
Confidence 45678899998 7888 89999998743 333345544655544444 4444
No 85
>3tqo_A Cysteinyl-tRNA synthetase; protein synthesis, ligase; 2.30A {Coxiella burnetii}
Probab=60.58 E-value=2.4 Score=41.77 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=16.7
Q ss_pred eecccccCCCCCCCcCCCCCCCCeeecCC
Q 020745 263 IESSFFPALQGETGKMSASDPNSAIYVTD 291 (322)
Q Consensus 263 l~~~~lp~L~G~~~KMSkS~p~~aI~L~D 291 (322)
+|+-++ .++| +|||||. +|.|.+.|
T Consensus 258 ~H~g~v-~~~G--~KMSKSl-GN~i~~~d 282 (462)
T 3tqo_A 258 MHAGLL-EINK--EKMSKSL-GNIISIRE 282 (462)
T ss_dssp EEECCE-EETT--EECCTTT-TCCCBHHH
T ss_pred EEccEE-ecCC--cCccccC-CCcccHHH
Confidence 344333 4555 8999998 78887654
No 86
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=52.83 E-value=10 Score=38.22 Aligned_cols=41 Identities=20% Similarity=0.244 Sum_probs=27.0
Q ss_pred EEEEeeccCCCCcchhhhHHHH---HHHHHHHhCCceEEE--EeeCc
Q 020745 87 YLYTGRGPSSEALHLGHLVPFM---FTKYLQDAFKVPLVI--QLTDD 128 (322)
Q Consensus 87 ~vytG~~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I--~IaD~ 128 (322)
.=|+|--|++ .|||||+-..+ .+.++.+..|..|.- -|+|+
T Consensus 107 ve~~spn~~~-~~HiGH~R~~iigD~laR~l~~~G~~V~~~~~i~D~ 152 (592)
T 1iq0_A 107 VEHTSVNPNK-ELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDT 152 (592)
T ss_dssp EECCCCCTTS-CCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEEECTT
T ss_pred EEeeCCCCCC-CCcchHHHHHHHHHHHHHHHHHcCCceEEEeccCCc
Confidence 3467888888 89999988754 333344444665554 37776
No 87
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasi aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=52.18 E-value=3.6 Score=40.41 Aligned_cols=16 Identities=6% Similarity=-0.110 Sum_probs=7.8
Q ss_pred CcccccccccChhhHH
Q 020745 230 HLRCLIPCAIDQDPYF 245 (322)
Q Consensus 230 ~~~~lvp~G~DQd~~~ 245 (322)
..+|+||+|+|||||.
T Consensus 232 ~~~~~vp~~~d~~~~~ 247 (451)
T 3foc_A 232 LPFTRVPLPVGTGNED 247 (451)
T ss_dssp SGGGCCBCC-------
T ss_pred CCccccccccccccch
Confidence 4689999999999994
No 88
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=50.91 E-value=14 Score=37.58 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=26.2
Q ss_pred EEeeccCCCCcchhhhHHHH----HHHHHHHhCCceEEE--EeeCc
Q 020745 89 YTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVI--QLTDD 128 (322)
Q Consensus 89 ytG~~PSg~slHlGhli~~~----~~~~lQ~~~g~~v~I--~IaD~ 128 (322)
|+|--|++ .|||||+-+.+ +.++|.- .|..|+- -|+|+
T Consensus 149 ~~spN~~~-plHvGHlRs~iiGD~laRil~~-~G~~V~~~~~i~D~ 192 (607)
T 1f7u_A 149 FSSPNIAK-PFHAGHLRSTIIGGFLANLYEK-LGWEVIRMNYLGDW 192 (607)
T ss_dssp CCCCBTTS-CCBGGGHHHHHHHHHHHHHHHH-TTCEEEEEEEEBCC
T ss_pred ecCCCCCC-CCccchHHHHHHHHHHHHHHHH-cCCCeeEEEeecCc
Confidence 67899998 89999988754 3344544 4655544 47884
No 89
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=49.90 E-value=2.8 Score=43.39 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=22.4
Q ss_pred ecccccCCCCCCCcCCCCCCCCeeecCC-----CHHHHHHHHhc
Q 020745 264 ESSFFPALQGETGKMSASDPNSAIYVTD-----SAKAIKNKIIL 302 (322)
Q Consensus 264 ~~~~lp~L~G~~~KMSkS~p~~aI~L~D-----~p~~i~~KI~k 302 (322)
++-++.. . |+|||||. +|.|++.| .++.++-=+..
T Consensus 334 ~hG~v~~-~--G~KMSKS~-GNvV~p~d~i~~ygaDalR~~ll~ 373 (722)
T 1rqg_A 334 ANEYLTL-E--GKKFSTSR-NWAIWVHEFLDVFPADYLRYYLTT 373 (722)
T ss_dssp EECCEEE-T--TEECBTTT-TBSCBHHHHTTTSCHHHHHHHHHH
T ss_pred EeeeEEe-C--CeeeeeeC-CCcCCHHHHHHhcCchHHHHHHHh
Confidence 3445543 5 48999999 89998654 45555544443
No 90
>3oqi_A YVMC, putative uncharacterized protein YVMC; tRNA, rossmann fold, ligase; HET: NHE; 1.70A {Bacillus licheniformis} PDB: 3oqh_A* 3oqj_A* 3s7t_A* 3oqi_B*
Probab=48.21 E-value=1.5e+02 Score=26.75 Aligned_cols=94 Identities=15% Similarity=0.220 Sum_probs=60.1
Q ss_pred HHhCCceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCccc-cc--ccCCCHHHHHHHHHH--------H
Q 020745 80 YEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEK-CM--WKNLSVEESQRLARE--------N 148 (322)
Q Consensus 80 ~~~~~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~-~l--~r~~~~e~i~~~~~~--------~ 148 (322)
+++|+ .+..|+-|=- +-|=+-.+-- ++.|.+..|+ .+.|+++|-+. .+ ....+..+.++.++. +
T Consensus 26 ~~~g~--HallGISpgN-syFs~d~L~~-Li~Wa~~~F~-~vdVli~D~~~~~~l~A~G~~~~~A~rKArre~~~~r~~i 100 (257)
T 3oqi_A 26 LKRRR--HVLVGISPFN-SRFSEDYIHR-LIAWAVREFQ-SVSVLLAGKEAANLLEALGTPHGKAERKVRKEVSRNRRFA 100 (257)
T ss_dssp HHHTC--EEEEEECTTS-TTCCHHHHHH-HHHHHHHHCS-EEEEEECCTTHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCC--eEEEEeCCCC-cccCHHHHHH-HHHHHHccCC-ceEEEeCCHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 34555 4899999986 8888888876 5889988766 57888999763 22 233566655554432 2
Q ss_pred HHHHHHcCCCCCceEEEecccccccccHHHHH
Q 020745 149 AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMV 180 (322)
Q Consensus 149 ~~~iiA~G~dp~kt~I~~ns~~~~~~~~~~~~ 180 (322)
...+.++|.+.+. |..=+++..+.-|.++.
T Consensus 101 ~ral~~~g~~~~~--v~~~Sd~~~~~~Y~~l~ 130 (257)
T 3oqi_A 101 EKALEAHGGNPED--IHTFSDFANQTAYRNLR 130 (257)
T ss_dssp HHHHHHHTCCTTC--EEETTTTTTCHHHHHHH
T ss_pred HHHHHHcCCCccc--ceeHHHhhcCHHHHHHH
Confidence 3334456887763 44445555555666544
No 91
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=47.77 E-value=15 Score=37.45 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=28.1
Q ss_pred ceEE-EEeeccCCCCcchhhhHHHH----HHHHHHHhCCceEEE--EeeCc
Q 020745 85 KFYL-YTGRGPSSEALHLGHLVPFM----FTKYLQDAFKVPLVI--QLTDD 128 (322)
Q Consensus 85 ~~~v-ytG~~PSg~slHlGhli~~~----~~~~lQ~~~g~~v~I--~IaD~ 128 (322)
++.| |+|--|++ .|||||+-..+ +.++|. ..|..|.- -|+|+
T Consensus 120 ~V~ve~~spN~~~-~~HiGH~Rs~iigD~laR~l~-~~G~~V~~~~~i~D~ 168 (629)
T 2zue_A 120 KVIVEHTSVNPTK-PLHMGHARNAILGDVMARILR-FLGYEVEVQNYIDDL 168 (629)
T ss_dssp EEEEECCCCCTTS-CCBHHHHHHHHHHHHHHHHHH-HTTCEEEEEEEECTT
T ss_pred EEEEEeeCCCCCC-CCccchhHHHHHHHHHHHHHH-HcCCCceEEecccch
Confidence 3434 78999998 89999988754 334454 44666555 37886
No 92
>3sp1_A Cysteinyl-tRNA synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, LYME disease; HET: AMP; 2.55A {Borrelia burgdorferi}
Probab=46.72 E-value=5.4 Score=39.67 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=8.5
Q ss_pred eeeecccccCCCCCCCcCCCCCCCCeeecC
Q 020745 261 ALIESSFFPALQGETGKMSASDPNSAIYVT 290 (322)
Q Consensus 261 ~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~ 290 (322)
+.+|+-++. +.| +|||||. +|.|.+.
T Consensus 286 ~w~H~g~v~-~~G--~KMSKSl-GN~it~~ 311 (501)
T 3sp1_A 286 VFVHGEFLI-MDY--NKMSKSR-GNFITVK 311 (501)
T ss_dssp EEEEECCEE-CC-------------CCCHH
T ss_pred EEEEeeeEe-eCC--eEccccC-CCcCCHH
Confidence 344545553 454 8999998 7877653
No 93
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=42.86 E-value=33 Score=35.73 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=24.8
Q ss_pred CCceEEEEee-ccCCCCcchhhhHHHH---HHHHHHHhCCceEEEE
Q 020745 83 GEKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVIQ 124 (322)
Q Consensus 83 ~~~~~vytG~-~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I~ 124 (322)
++++++.+|. -||| .|||||+.... .+.++++.-|..|...
T Consensus 33 ~~~~~i~~~~Py~nG-~lHiGH~~~~~~~D~i~R~~rm~G~~V~~~ 77 (810)
T 1wkb_A 33 EKKFYITVAFPYLSG-HLHVGHARTYTIPDVIARFKRMQGYNVLFP 77 (810)
T ss_dssp GGEEEEEECCCBTTS-CCBHHHHHHHHHHHHHHHHHHHHTCEEECC
T ss_pred CCcEEEEeCCCCCCC-CCccccchhHHHHHHHHHHHHcCCCccCcC
Confidence 3467777665 3567 89999998753 2333444336655543
No 94
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, struc genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=39.68 E-value=27 Score=34.13 Aligned_cols=46 Identities=26% Similarity=0.441 Sum_probs=28.6
Q ss_pred CCceEE-EEeeccCCCCcchhhhHHHHH---HHHHHHhCCceEEE--EeeCcc
Q 020745 83 GEKFYL-YTGRGPSSEALHLGHLVPFMF---TKYLQDAFKVPLVI--QLTDDE 129 (322)
Q Consensus 83 ~~~~~v-ytG~~PSg~slHlGhli~~~~---~~~lQ~~~g~~v~I--~IaD~~ 129 (322)
++++.| |+.--||| .||+||+-...+ +..+.+..|..|.- -|+|+=
T Consensus 29 ~~~v~vE~ss~n~~~-~~h~gh~r~~~~gd~~~r~~~~~G~~v~r~nyi~D~G 80 (464)
T 3fnr_A 29 QESFLLEYVSANPTG-PLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDAG 80 (464)
T ss_dssp SCEEEEECCCCCSSS-SCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCCH
T ss_pred CCEEEEEeCCCCCCC-CCccchhHHHHHHHHHHHHHHHcCCceEEEeeeCCcc
Confidence 344433 67889999 899999886542 33344444665544 366653
No 95
>1qjc_A Phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.64A {Escherichia coli} SCOP: c.26.1.3 PDB: 1h1t_A* 1gn8_A* 1b6t_A* 3l92_A* 3l93_A
Probab=32.62 E-value=1.3e+02 Score=23.80 Aligned_cols=39 Identities=15% Similarity=0.211 Sum_probs=22.6
Q ss_pred eEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCccc
Q 020745 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEK 130 (322)
Q Consensus 86 ~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~ 130 (322)
..++.|.- +.+|+||+..+ +...+.++..+++.-.||++
T Consensus 3 i~i~~GsF---DpvH~GH~~l~---~~a~~~~d~v~v~~~~~p~k 41 (158)
T 1qjc_A 3 RAIYPGTF---DPITNGHIDIV---TRATQMFDHVILAIAASPSK 41 (158)
T ss_dssp EEEEEECC---TTCCHHHHHHH---HHHHTTSSEEEEEEESCCSS
T ss_pred EEEEEecC---CCCCHHHHHHH---HHHHHhCCEEEEEECCCCCC
Confidence 45666644 67999997644 34333334333444457765
No 96
>2ejc_A Pantoate--beta-alanine ligase; X-RAY diffraction, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Thermotoga maritima}
Probab=29.59 E-value=68 Score=29.22 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHhCCCCceeeecccccCCCCCCCcCCCCCCCCeeecCCCHHHHHHHHh
Q 020745 242 DPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKII 301 (322)
Q Consensus 242 d~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G~~~KMSkS~p~~aI~L~D~p~~i~~KI~ 301 (322)
-|-..+.+.+++.++.+-- .+-.+.+.--+ |..||++ .+||+++..+..-.|.
T Consensus 151 ~qq~~~l~~~~~dl~~~v~-iv~vp~vr~~d--GlaiSSr----n~yLs~~er~~A~~l~ 203 (280)
T 2ejc_A 151 AQQFRVLRRMVRDLNMDVE-MIECPIVREPD--GLAMSSR----NVYLSPEERQQALSLY 203 (280)
T ss_dssp HHHHHHHHHHHHHTTCCCE-EEEECCCBCTT--SCBCCGG----GGGCCHHHHHHTHHHH
T ss_pred CcCHHHHHHHHHHcCCeEE-EEeeCcEEcCC--CCEeccC----cccCCHHHHHHHHHHH
Confidence 5566677999999987421 11233333334 4799987 4677766554444433
No 97
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiativ structural genomics, ligase-RNA complex; 3.21A {Pyrococcus horikoshii}
Probab=25.84 E-value=34 Score=36.54 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=25.4
Q ss_pred CceEEEEee-ccCCCCcchhhhHHHH---HHHHHHHhCCceEEE
Q 020745 84 EKFYLYTGR-GPSSEALHLGHLVPFM---FTKYLQDAFKVPLVI 123 (322)
Q Consensus 84 ~~~~vytG~-~PSg~slHlGhli~~~---~~~~lQ~~~g~~v~I 123 (322)
++|+++.|+ -||| .||+||.+... ++.++++.-|..+.-
T Consensus 34 ~kf~i~~~pPy~nG-~lHiGH~~~~~~~Dii~Ry~rm~G~~Vl~ 76 (967)
T 1wz2_A 34 KKFYITVAFPYLSG-HLHVGHARTYTIPDVIARFKRMQGYNVLF 76 (967)
T ss_dssp GCCBEEECCCBCSS-CCBHHHHHHHHHHHHHHHHHHHTTCCCBC
T ss_pred CcEEEEeCCCCCCC-CcchhhhHHHHHHHHHHHHHHcCCCccCC
Confidence 578888887 3577 89999998743 333445444544433
No 98
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=25.62 E-value=11 Score=39.86 Aligned_cols=15 Identities=27% Similarity=0.310 Sum_probs=12.5
Q ss_pred CcCCCCCCCCeeecCC
Q 020745 276 GKMSASDPNSAIYVTD 291 (322)
Q Consensus 276 ~KMSkS~p~~aI~L~D 291 (322)
+|||||. +|.|.+.|
T Consensus 636 ~KMSKSk-GNvVdP~d 650 (878)
T 2v0c_A 636 AVMSKSK-GNGVMVGP 650 (878)
T ss_dssp EECSGGG-TCCCBHHH
T ss_pred HHhhccC-CCcccHHH
Confidence 7999999 89987654
No 99
>3nv7_A Phosphopantetheine adenylyltransferase; helicobacter pylori 26695 strain, mutant I4V/N76Y, phosphopa adenylyltransferase; 1.75A {Helicobacter pylori} PDB: 3otw_A*
Probab=23.00 E-value=2.3e+02 Score=23.01 Aligned_cols=45 Identities=20% Similarity=0.409 Sum_probs=25.5
Q ss_pred eEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeC-cccccccC-CCHHH
Q 020745 86 FYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTD-DEKCMWKN-LSVEE 140 (322)
Q Consensus 86 ~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD-~~~~l~r~-~~~e~ 140 (322)
..+|.|.- +.+|.||+-.+ +...+.++ .++|.++. ++| +. .+.++
T Consensus 4 i~i~~GsF---DPiH~GHl~ii---~~A~~~~D-~viv~v~~~~~K---~~~~~~~e 50 (157)
T 3nv7_A 4 VGIYPGTF---DPVTNGHIDII---HRSSELFE-KLIVAVAHSSAK---NPMFSLDE 50 (157)
T ss_dssp EEEEEECC---TTCCHHHHHHH---HHHHTTSS-EEEEEEECCGGG---CCSSCHHH
T ss_pred EEEEEEEc---CCCCHHHHHHH---HHHHHhCC-ceEEEEccCCCC---CCCCCHHH
Confidence 45666644 78999997654 33333344 45555554 444 33 56655
No 100
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}
Probab=22.85 E-value=2.5e+02 Score=22.46 Aligned_cols=44 Identities=7% Similarity=0.040 Sum_probs=25.5
Q ss_pred ccccChhhHHHHHHHHHHHhCCCCceeeecccccCCCC-CCCcCCCCC
Q 020745 236 PCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG-ETGKMSASD 282 (322)
Q Consensus 236 p~G~DQd~~~~ltrdla~k~~~~kp~~l~~~~lp~L~G-~~~KMSkS~ 282 (322)
-++.++..-....+++.++.|+++-... .+|.+.. .+.|.|+|.
T Consensus 91 vvs~Et~~~~~~l~~~~~~~G~~~l~V~---~v~~~~~~~~~~iSST~ 135 (148)
T 3do8_A 91 VVSPETYEMALKINQKREELGKRKITIV---KVDWMMAEDGKPISSTR 135 (148)
T ss_dssp EECTTTHHHHHHHHHHHHHHTCCCCEEE---EEECCC-------CCCC
T ss_pred EEChhhcccHHHHHHHHHHcCCCeeEEE---EeccEEcCCCCEEEHHH
Confidence 4788888888888999999987432222 2333322 358999985
No 101
>4arc_A Leucine--tRNA ligase; ligase-RNA complex, nucleotide-binding, protein biosynthesis I aminoacyl-tRNA synthetase, ATP-binding; 2.00A {Escherichia coli} PDB: 4aq7_A 4ari_A* 4as1_A*
Probab=22.84 E-value=15 Score=39.07 Aligned_cols=14 Identities=43% Similarity=0.328 Sum_probs=11.5
Q ss_pred cCCCCCCCCeeecCC
Q 020745 277 KMSASDPNSAIYVTD 291 (322)
Q Consensus 277 KMSkS~p~~aI~L~D 291 (322)
|||||. +|.|.+.|
T Consensus 639 KMSKSk-GNvVdP~d 652 (880)
T 4arc_A 639 KMSKSK-NNGIDPQV 652 (880)
T ss_dssp ECCTTT-TCCCCHHH
T ss_pred cccCcC-CCCCCHHH
Confidence 999999 88887554
No 102
>3oqv_A ALBC; rossman fold, cyclodipeptide synthase, aminoacyl-tRNA, prote binding; 1.90A {Streptomyces noursei}
Probab=22.40 E-value=3e+02 Score=24.53 Aligned_cols=91 Identities=11% Similarity=0.109 Sum_probs=60.0
Q ss_pred EEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcc-cccc--cCCCHHHHHHHHH--------HHHHHHHHc
Q 020745 87 YLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE-KCMW--KNLSVEESQRLAR--------ENAKDIIAC 155 (322)
Q Consensus 87 ~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~-~~l~--r~~~~e~i~~~~~--------~~~~~iiA~ 155 (322)
.+..|+-|=- +-|=+..+-- ++.|.+..|+ .+.|+++|-+ +.+- ...+.++.++.++ .+...|.++
T Consensus 31 HallGVSpgN-syFs~drl~~-li~Wa~~~F~-~vdVli~D~~~~~tl~A~G~~~~~A~rKarr~~~~~r~~i~ral~~~ 107 (247)
T 3oqv_A 31 HALIGISAGN-SYFSQKNTVM-LLQWAGQRFE-RTDVVYVDTHIDEMLIADGRSAQEAERSVKRTLKDLRRRLRRSLESV 107 (247)
T ss_dssp EEEEEEESSC-TTCCHHHHHH-HHHHHHHHEE-EEEEEEECSSHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCC-cccCHHHHHH-HHHHHHccCC-ceEEEeCChHHhhhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5999999986 8888888876 5889987765 5788889986 3221 2355555544443 233345567
Q ss_pred CCCCCceEEEecccccccccHHHHH
Q 020745 156 GFDVTKTFIFSDFDYVGGAFYKNMV 180 (322)
Q Consensus 156 G~dp~kt~I~~ns~~~~~~~~~~~~ 180 (322)
|.+.+..-|..=|++..+..|.++.
T Consensus 108 ~~~~~~~rv~~~Sd~~~~~~Y~~l~ 132 (247)
T 3oqv_A 108 GDHAERFRVRSLSELQETPEYRAVR 132 (247)
T ss_dssp CTTGGGEEEEEHHHHTTSHHHHHHH
T ss_pred CCCccCceeeeHHHhhCCHHHHHHH
Confidence 8887776565556665566666654
No 103
>1o6b_A Phosphopantetheine adenylyltransferase; structural genomics; HET: ADP; 2.20A {Bacillus subtilis} SCOP: c.26.1.3
Probab=21.63 E-value=2.8e+02 Score=22.12 Aligned_cols=37 Identities=16% Similarity=0.249 Sum_probs=20.8
Q ss_pred ceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCc
Q 020745 85 KFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDD 128 (322)
Q Consensus 85 ~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~ 128 (322)
+..++.|.- +.+|+||+..+ +...+.++. ++|.++++
T Consensus 3 ~i~i~~GsF---DpvH~GH~~li---~~a~~~~d~-v~v~~~~~ 39 (169)
T 1o6b_A 3 SIAVCPGSF---DPVTYGHLDII---KRGAHIFEQ-VYVCVLNN 39 (169)
T ss_dssp CEEEEEECC---TTCCHHHHHHH---HHHHHHSSE-EEEEECCC
T ss_pred cEEEEEEee---CCCCHHHHHHH---HHHHHhCCE-EEEEECCC
Confidence 355676644 67999998654 333333343 44544543
No 104
>3f3m_A Phosphopantetheine adenylyltransferase; PPAT, coenzyme A BIO pathway, coenzyme A biosynthesis, nucleotidyltransferase; HET: PPS; 2.40A {Staphylococcus aureus} SCOP: c.26.1.0
Probab=21.26 E-value=1.8e+02 Score=24.07 Aligned_cols=47 Identities=21% Similarity=0.345 Sum_probs=24.6
Q ss_pred CceEEEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEee-CcccccccC-CCHHH
Q 020745 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLT-DDEKCMWKN-LSVEE 140 (322)
Q Consensus 84 ~~~~vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~Ia-D~~~~l~r~-~~~e~ 140 (322)
++..+|.|-- +.+|.||+..+. ...+.++ .+++.++ +++| +. .+.++
T Consensus 3 ~ki~i~~GsF---DPiH~GHl~i~~---~a~~~~d-~viv~v~~~p~K---~~~~~~~~ 51 (168)
T 3f3m_A 3 HTIAVIPGSF---DPITYGHLDIIE---RSTDRFD-EIHVCVLKNSKK---EGTFSLEE 51 (168)
T ss_dssp CCEEEEEECC---TTCCHHHHHHHH---HHGGGSS-EEEEEECC--------CCSCHHH
T ss_pred ceEEEEEEEc---CcCCHHHHHHHH---HHHHhCC-EEEEEEcCCCCC---CCCCCHHH
Confidence 3467777744 689999987553 3333344 3455444 4544 23 55554
No 105
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=20.31 E-value=4.6e+02 Score=23.38 Aligned_cols=140 Identities=14% Similarity=0.226 Sum_probs=67.6
Q ss_pred cccccCcccCCCCccHHHHHHHhCCCCCCHHHHHHHHHhhCCCchhhhhc---Cce--eecCCHHHHHHHHHh--CCceE
Q 020745 15 QVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRR---GVF--FAHRDLNDILDAYEK--GEKFY 87 (322)
Q Consensus 15 ~~~~pw~v~~~~~~dy~kl~~~fg~~~~~~~~l~r~~~~~~~~~~~l~~R---gi~--~~~~d~~~ll~~~~~--~~~~~ 87 (322)
..+||+.-.+ .|||+.+-+ +++++-+ .| .+-++-- |-+ .+..+..++++...+ +.++-
T Consensus 11 a~vTPf~~dg--~iD~~~l~~----------lv~~li~-~G--v~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvp 75 (300)
T 3eb2_A 11 YLVSPVDAEG--RVRADVMGR----------LCDDLIQ-AG--VHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVP 75 (300)
T ss_dssp BCCCCBCTTS--CBCHHHHHH----------HHHHHHH-TT--CSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSC
T ss_pred EEeccCCCCC--CcCHHHHHH----------HHHHHHH-cC--CCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCc
Confidence 3589998776 899987755 3433322 01 0100000 001 122233344443322 33455
Q ss_pred EEEeeccCCCCcchhhhHHHHHHHHHHHhCCceEEEEeeCcccccccCCCHHHHHHHHHHHHHHHHHcCCCCCceEEEec
Q 020745 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSD 167 (322)
Q Consensus 88 vytG~~PSg~slHlGhli~~~~~~~lQ~~~g~~v~I~IaD~~~~l~r~~~~e~i~~~~~~~~~~iiA~G~dp~kt~I~~n 167 (322)
++.|..-.+ ... .+.+.+..+++ |+..++++. |. ..+ .+.+.+.++-+..+ -+.++ -+.+|+.
T Consensus 76 viaGvg~~~----t~~--ai~la~~a~~~-Gadavlv~~-P~--y~~-~~~~~l~~~f~~va---~a~~l---PiilYn~ 138 (300)
T 3eb2_A 76 VVAGVASTS----VAD--AVAQAKLYEKL-GADGILAIL-EA--YFP-LKDAQIESYFRAIA---DAVEI---PVVIYTN 138 (300)
T ss_dssp BEEEEEESS----HHH--HHHHHHHHHHH-TCSEEEEEE-CC--SSC-CCHHHHHHHHHHHH---HHCSS---CEEEEEC
T ss_pred EEEeCCCCC----HHH--HHHHHHHHHHc-CCCEEEEcC-CC--CCC-CCHHHHHHHHHHHH---HHCCC---CEEEEEC
Confidence 777876443 122 23356778887 776665544 32 223 57777765433332 24554 3577776
Q ss_pred cccccccc-HHHHHHHHccc
Q 020745 168 FDYVGGAF-YKNMVKVAKCV 186 (322)
Q Consensus 168 s~~~~~~~-~~~~~~l~k~~ 186 (322)
-...+..+ ...+.++++..
T Consensus 139 P~~tg~~l~~~~~~~La~~p 158 (300)
T 3eb2_A 139 PQFQRSDLTLDVIARLAEHP 158 (300)
T ss_dssp TTTCSSCCCHHHHHHHHTST
T ss_pred ccccCCCCCHHHHHHHHcCC
Confidence 54433222 23344555443
Done!