RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 020745
(322 letters)
>gnl|CDD|178104 PLN02486, PLN02486, aminoacyl-tRNA ligase.
Length = 383
Score = 626 bits (1617), Expect = 0.0
Identities = 252/288 (87%), Positives = 270/288 (93%), Gaps = 2/288 (0%)
Query: 15 QVVSPWEVSS--SGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRD 72
QVV+PWEVS+ GKIDYDKL+DKFGCQRLD SL+DRV+RLTGRP H FLRRGVFFAHRD
Sbjct: 1 QVVTPWEVSAKDGGKIDYDKLVDKFGCQRLDPSLIDRVERLTGRPAHPFLRRGVFFAHRD 60
Query: 73 LNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCM 132
L +ILDAYEKGEKFYLYTGRGPSSEALHLGHL+PFMFTKYLQDAFKVPLVIQLTDDEK +
Sbjct: 61 LEEILDAYEKGEKFYLYTGRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFL 120
Query: 133 WKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVV 192
WKNLSVEESQRLARENAKDIIACGFDV +TFIFSDFDYVGGAFYKNMVK+AKCVT N+V
Sbjct: 121 WKNLSVEESQRLARENAKDIIACGFDVERTFIFSDFDYVGGAFYKNMVKIAKCVTLNQVR 180
Query: 193 GIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVA 252
GIFGF+GED+IGK+SFP VQA PSFPSSFPHLF GKD LRCLIPCAIDQDPYFRMTRDVA
Sbjct: 181 GIFGFSGEDNIGKISFPAVQAAPSFPSSFPHLFGGKDKLRCLIPCAIDQDPYFRMTRDVA 240
Query: 253 PRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
PR+GY+KPALIES FFPALQGE+GKMSASDPNSAIYVTD+ K IKNKI
Sbjct: 241 PRLGYYKPALIESRFFPALQGESGKMSASDPNSAIYVTDTPKEIKNKI 288
>gnl|CDD|237037 PRK12285, PRK12285, tryptophanyl-tRNA synthetase; Reviewed.
Length = 368
Score = 284 bits (730), Expect = 1e-94
Identities = 115/294 (39%), Positives = 165/294 (56%), Gaps = 25/294 (8%)
Query: 12 EREQVVSPWEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHR 71
E E +V+PWEVS G +DYDKL ++FG + + L + PH +RRG+ F HR
Sbjct: 1 EDEFMVTPWEVS--GIVDYDKLFEEFGIEPFTEVL-PELPE-----PHPLMRRGIIFGHR 52
Query: 72 DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKC 131
D + IL+AY G+ F +YTG PS +H+GH + F K+ Q+ F + I + DDE
Sbjct: 53 DYDKILEAYRNGKPFAVYTGFMPSGP-MHIGHKMVFDELKWHQE-FGANVYIPIADDEAY 110
Query: 132 MWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNM-VKVAKCVTYNK 190
+ LS EE++ A E D+IA GFD KT I+ + ++ ++AK V +++
Sbjct: 111 AARGLSWEETREWAYEYILDLIALGFDPDKTEIYFQSEN---IKVYDLAFELAKKVNFSE 167
Query: 191 VVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRD 250
+ I+GFTGE +IG + +P QA P L G L+P IDQDP+ R+TRD
Sbjct: 168 LKAIYGFTGETNIGHIFYPATQAADIL---HPQLEEGP--KPTLVPVGIDQDPHIRLTRD 222
Query: 251 VAPRI----GYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
+A R+ G+ KP+ F P L G GKMS+S P SAIY+TD + +K KI
Sbjct: 223 IAERLHGGYGFIKPSSTYHKFMPGLTG--GKMSSSKPESAIYLTDDPETVKKKI 274
>gnl|CDD|173903 cd00806, TrpRS_core, catalytic core domain of tryptophanyl-tRNA
synthetase. Tryptophanyl-tRNA synthetase (TrpRS)
catalytic core domain. TrpRS is a homodimer which
attaches Tyr to the appropriate tRNA. TrpRS is a class I
tRNA synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formation of the enzyme bound
aminoacyl-adenylate. It contains class I characteristic
HIGH and KMSKS motifs, which are involved in ATP
binding.
Length = 280
Score = 231 bits (592), Expect = 5e-75
Identities = 82/229 (35%), Positives = 115/229 (50%), Gaps = 30/229 (13%)
Query: 87 YLYTGRGPSSEALHLGHLVP-FMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLA 145
+ +G PS +LHLGH + F F +LQ+A L + D K L EE ++
Sbjct: 1 RVLSGIQPSG-SLHLGHYLGAFRFWVWLQEA-GYELFFFIADLHALTVKQLDPEELRQNT 58
Query: 146 RENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFT------G 199
RENAKD +ACG D K+ IF D Y+ ++ VT+ ++ + GF
Sbjct: 59 RENAKDYLACGLDPEKSTIFFQSDV--PEHYELAWLLSCVVTFGELERMTGFKDKSAQGE 116
Query: 200 EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYH- 258
+IG +++P +QA CL+P IDQDP+ +TRD+A R
Sbjct: 117 SVNIGLLTYPVLQAADILLYKA-----------CLVPVGIDQDPHLELTRDIARRFNKLY 165
Query: 259 -----KPALIES--SFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
KPA + S +F P LQG + KMS SDPN+AI++TDS K IK KI
Sbjct: 166 GEIFPKPAALLSKGAFLPGLQGPSKKMSKSDPNNAIFLTDSPKEIKKKI 214
>gnl|CDD|232888 TIGR00233, trpS, tryptophanyl-tRNA synthetase. This model
represents tryptophanyl-tRNA synthetase. Some members of
the family have a pfam00458 domain amino-terminal to the
region described by this model [Protein synthesis, tRNA
aminoacylation].
Length = 327
Score = 214 bits (546), Expect = 1e-67
Identities = 83/230 (36%), Positives = 114/230 (49%), Gaps = 29/230 (12%)
Query: 84 EKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQR 143
+KF + TG PS +HLGH + + TK+LQ F V L I + D K ++ R
Sbjct: 1 KKFRVLTGIQPSG-KMHLGHYLGAIQTKWLQ-QFGVELFICIADLHAITVKQTD-PDALR 57
Query: 144 LAREN-AKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTGEDH 202
ARE A D +A G D KTFIF DY Y+ ++ VT+ ++ + F +
Sbjct: 58 KAREELAADYLAVGLDPEKTFIFLQSDY--PEHYELAWLLSCQVTFGELKRMTQFKDKSQ 115
Query: 203 -----IGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIG- 256
IG +S+P +QA L+P IDQD + +TRD+A R
Sbjct: 116 AENVPIGLLSYPVLQAADILLYQAD-----------LVPVGIDQDQHLELTRDLAERFNK 164
Query: 257 -----YHKPALIESSFFPALQGETG-KMSASDPNSAIYVTDSAKAIKNKI 300
+ KP + S FFP L G +G KMS SDPNSAI++TD+ K IK KI
Sbjct: 165 KFKNFFPKPESLISKFFPRLMGLSGKKMSKSDPNSAIFLTDTPKQIKKKI 214
>gnl|CDD|223258 COG0180, TrpS, Tryptophanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 314
Score = 182 bits (464), Expect = 2e-55
Identities = 61/236 (25%), Positives = 99/236 (41%), Gaps = 31/236 (13%)
Query: 81 EKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEE 140
E +KF + +G PS + LHLG+ + + L + D + EE
Sbjct: 1 ENMKKFRVLSGIQPSGK-LHLGNYLGAIRNWVLLQEEYYECFFFIADLHAITVRQDPTEE 59
Query: 141 S-QRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGFTG 199
++ RE A D +A G D K+ IF + + ++ + ++ + F
Sbjct: 60 DLRQATREVAADYLAVGLDPEKSTIFLQSEV--PEHAELAWLLSCVTNFGELERMTQFKD 117
Query: 200 ED-------HIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVA 252
+ IG +++P +QA L+ L+P DQD + +TRD+A
Sbjct: 118 KSAKKGESIPIGLLTYPVLQAADIL------LYQA-----TLVPVGEDQDQHLELTRDIA 166
Query: 253 PRIGYH------KPALI--ESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
R + P + + + P L G GKMS SDPNSAI++ D K I+ KI
Sbjct: 167 RRFNHLYGEVFPLPEALISKVARLPGLDGP-GKMSKSDPNSAIFLLDDPKTIRKKI 221
>gnl|CDD|236286 PRK08560, PRK08560, tyrosyl-tRNA synthetase; Validated.
Length = 329
Score = 94.5 bits (236), Expect = 3e-22
Identities = 73/237 (30%), Positives = 107/237 (45%), Gaps = 42/237 (17%)
Query: 81 EKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVIQLTD-----DEKCMWK 134
E E+ Y G PS + +HLGHL+ LQ A FKV + L D ++K
Sbjct: 26 ESKEEPKAYIGFEPSGK-IHLGHLLTMNKLADLQKAGFKV--TVLLADWHAYLNDKG--- 79
Query: 135 NLSVEESQRLARENAKDIIACGFDVTKT-FIF-SDF----DYVGGAFYKNMVKVAKCVTY 188
+EE +++A N K A G D KT F+ S+F +Y ++K+AK T
Sbjct: 80 --DLEEIRKVAEYNKKVFEALGLDPDKTEFVLGSEFQLDKEYWL-----LVLKLAKNTTL 132
Query: 189 NKV---VGIFGFTGEDH-IGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCA-IDQDP 243
+ + I G E+ + K+ +P +Q F +L I +DQ
Sbjct: 133 ARARRSMTIMGRRMEEPDVSKLVYPLMQVADIF------------YLDVDIAVGGMDQRK 180
Query: 244 YFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
+ R+V P++GY KP I + L G KMS S P SAI+V DS + I+ KI
Sbjct: 181 IHMLAREVLPKLGYKKPVCIHTPLLTGLDGGGIKMSKSKPGSAIFVHDSPEEIRRKI 237
>gnl|CDD|216003 pfam00579, tRNA-synt_1b, tRNA synthetases class I (W and Y).
Length = 291
Score = 83.5 bits (207), Expect = 2e-18
Identities = 59/239 (24%), Positives = 88/239 (36%), Gaps = 40/239 (16%)
Query: 82 KGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI-----QLTDDEKCMWKNL 136
K +YTG P+ LHLG+LVP M Q A + + D +
Sbjct: 2 KERPLRVYTGFDPTGP-LHLGYLVPLMKLVQFQQAGHEVFFLIGDLTAIIGD-----PSK 55
Query: 137 SVEESQRLAR---ENAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKV-AKCVTYNKVV 192
S E ENAK +ACG D K+ I ++ D++ + + + + +
Sbjct: 56 SEERKLLSREEVLENAKAQLACGLDPEKSEIVNNSDWLE---HLELAWLLRDLGNHFSLN 112
Query: 193 GIFGFTG----EDHIGKVSF-----PPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDP 243
+ F +S P +QA + L D L P DQ
Sbjct: 113 RMLQFKDVKKRLKQNPGISLGEFTYPLLQA-----ADILLLK--AD----LQPGGSDQWG 161
Query: 244 YFRMTRDVAPRIGYHKPALIESSFFPALQGETG--KMSASDPNSAIYVTDSAKAIKNKI 300
+ + RD+A R P L G G KMS S NSAI++ D +++ KI
Sbjct: 162 HIELGRDLARRFNKKVFKKPVGLTNPLLTGLDGGKKMSKSAGNSAIFLDDEKESVYKKI 220
>gnl|CDD|173902 cd00805, TyrRS_core, catalytic core domain of tyrosinyl-tRNA
synthetase. Tyrosinyl-tRNA synthetase (TyrRS) catalytic
core domain. TyrRS is a homodimer which attaches Tyr to
the appropriate tRNA. TyrRS is a class I tRNA
synthetases, so it aminoacylates the 2'-OH of the
nucleotide at the 3' end of the tRNA. The core domain is
based on the Rossman fold and is responsible for the
ATP-dependent formationof the enzyme bound
aminoacyl-adenylate. It contains the class I
characteristic HIGH and KMSKS motifs, which are involved
in ATP binding.
Length = 269
Score = 56.8 bits (138), Expect = 3e-09
Identities = 57/240 (23%), Positives = 98/240 (40%), Gaps = 36/240 (15%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVI-----QLTD--DEKCMWKNLSVE 139
+Y G P++ +LHLGHLVP M + Q A +V ++I + D + K L +E
Sbjct: 3 VYIGFDPTAPSLHLGHLVPLMKLRDFQQAGHEVIVLIGDATAMIGDPSGKSEERKLLDLE 62
Query: 140 ESQRLARENAKDIIACG-FDVTKTFIFSD-FDYVGGAFYKNMVKVAKCVTYNKVVGIFGF 197
+ A+ K + A F + F + D++ + + +++ K T N+++
Sbjct: 63 LIRENAKYYKKQLKAILDFIPPEKAKFVNNSDWLLSLYTLDFLRLGKHFTVNRMLRRDAV 122
Query: 198 TG----EDHIG--KVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAI---DQDPYFRMT 248
E+ I + +P +QA +L D + DQ +
Sbjct: 123 KVRLEEEEGISFSEFIYPLLQAYDFV-----YLD--VD-------LQLGGSDQRGNITLG 168
Query: 249 RDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSA-IYVTDSAKAIKNKIILLKCAD 307
RD+ ++GY K + + L G GKMS S+ N+ V DS + KI D
Sbjct: 169 RDLIRKLGYKKVVGLTTPLLTGLDG--GKMSKSEGNAIWDPVLDSPYDVYQKIRNAFDPD 226
>gnl|CDD|223240 COG0162, TyrS, Tyrosyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 401
Score = 56.9 bits (138), Expect = 4e-09
Identities = 50/256 (19%), Positives = 89/256 (34%), Gaps = 49/256 (19%)
Query: 75 DILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVPLVI-----QLTDD 128
+ L + +Y G P++ +LHLGHLVP M + QDA K ++I + D
Sbjct: 22 EELRKLLEEGPLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHKPIVLIGDATAMIGD- 80
Query: 129 EKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA-FYKNM------VK 181
+ EE + L RE + F+ + ++V + + K +
Sbjct: 81 -----PSGKSEERKLLTRETVLENAETIKKQLGKFLDNKAEFVNNSDWLKKLNYLDFLRD 135
Query: 182 VAKCVTYNKVVGIFGFTG----EDHIG--KVSFPPVQAVPSFPSSFPHLFSGKDHLRCLI 235
V K + N+++ E I + ++P +QA +L KD
Sbjct: 136 VGKHFSVNRMLRRDDVKKRLEREQGISFTEFNYPLLQAYDFV-----YL--NKD------ 182
Query: 236 PCAI---DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGE-------TGKMSASDPNS 285
+ DQ RD+ R+G K + + L G+ S+ S
Sbjct: 183 -LQLGGSDQWGNILAGRDLIRRLGQKKVVGLTTPLLTGLDGKKMGKSEGGAVWLDSEKTS 241
Query: 286 AIYVTDSAKAIKNKII 301
I++ +
Sbjct: 242 PYDFYQYWMNIEDADV 257
>gnl|CDD|232889 TIGR00234, tyrS, tyrosyl-tRNA synthetase. This tyrosyl-tRNA
synthetase model starts picking up tryptophanyl-tRNA
synthetases at scores of 0 and below. The proteins found
by this model have a deep split between two groups. One
group contains bacterial and organellar eukaryotic
examples. The other contains archaeal and cytosolic
eukaryotic examples [Protein synthesis, tRNA
aminoacylation].
Length = 377
Score = 51.2 bits (123), Expect = 3e-07
Identities = 59/271 (21%), Positives = 103/271 (38%), Gaps = 47/271 (17%)
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA-FKVP 120
+RG+ + ++L K LY G P++ +LHLGHLVP + + Q A +V
Sbjct: 9 KKRGLEVQVPEEEELLK--LLERKIKLYVGFDPTAPSLHLGHLVPLLKLRDFQQAGHEVI 66
Query: 121 LVI-----QLTD--DEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGG 173
+++ + D + K L+ EE Q A EN K IA D K ++ +++
Sbjct: 67 VLLGDATALIGDPSGKSEERKLLTREEVQENA-ENIKKQIARFLDFEKAKFVNNSEWLLK 125
Query: 174 AFYKNMV-KVAKCVTYNKVVGIFGFT---GEDH-IGKVSFPPVQAVPSFPSSFPHLFSGK 228
Y + + + K + N+++ F+ + + +P +QA F +L
Sbjct: 126 LNYIDFIRDLGKIFSVNRMLRRDAFSSRLERGISLSEFIYPLLQAY-----DFVYL--NV 178
Query: 229 DHLRCLIPCAI---DQDPYFRMTRDVAPRIGYHKPALIESSFFPALQG---------ETG 276
D I DQ RD+ R P+L P L E G
Sbjct: 179 D-------LQIGGSDQWGNILKGRDLIRRNL---PSLGFGLTVPLLTPADGEKMGKSEGG 228
Query: 277 KMSASDP--NSAIYVTDSAKAIKNKIILLKC 305
+S + + + ++ KI+ L
Sbjct: 229 AVSLDEGKYDFYQFWINTPDEDVKKILKLFT 259
>gnl|CDD|234866 PRK00927, PRK00927, tryptophanyl-tRNA synthetase; Reviewed.
Length = 333
Score = 47.4 bits (114), Expect = 5e-06
Identities = 28/78 (35%), Positives = 35/78 (44%), Gaps = 11/78 (14%)
Query: 234 LIPCAIDQDPYFRMTRDVAPRIGYH------KP-ALI--ESSFFPALQGETGKMSASDPN 284
L+P DQ + +TRD+A R P LI + L G T KMS SDPN
Sbjct: 141 LVPVGEDQKQHLELTRDIARRFNNLYGEVFPVPEPLIPKVGARVMGLDGPTKKMSKSDPN 200
Query: 285 --SAIYVTDSAKAIKNKI 300
+ I + D K I KI
Sbjct: 201 DNNTINLLDDPKTIAKKI 218
>gnl|CDD|240282 PTZ00126, PTZ00126, tyrosyl-tRNA synthetase; Provisional.
Length = 383
Score = 45.8 bits (109), Expect = 2e-05
Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 258 HKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKIILLKCA 306
KP ++ P L KMS SDPNSAI++ DS + + KI K A
Sbjct: 238 KKPIILSHHMLPGLLEGQEKMSKSDPNSAIFMEDSEEDVNRKI---KKA 283
>gnl|CDD|183400 PRK12282, PRK12282, tryptophanyl-tRNA synthetase II; Reviewed.
Length = 333
Score = 43.3 bits (103), Expect = 8e-05
Identities = 67/246 (27%), Positives = 98/246 (39%), Gaps = 69/246 (28%)
Query: 90 TGRGPSSEALHLGHLVPFM--FTKYLQDAFKVPLVI---Q-LTDDEKCMWKNLSVEESQR 143
TG P+ LHLGH V + LQ+ + ++I Q LTD+ + ++
Sbjct: 7 TGDRPTG-KLHLGHYVGSLKNRVA-LQNEHEQFVLIADQQALTDN---------AKNPEK 55
Query: 144 LAREN----AKDIIACGFDVTKTFIF--------SDFDYVGGAFYKNMVKVAKC---VTY 188
+ R N A D +A G D K+ IF ++ +Y N+V VA+ T
Sbjct: 56 I-RRNILEVALDYLAVGIDPAKSTIFIQSQIPELAEL----TMYYMNLVTVARLERNPTV 110
Query: 189 NKVVGIFGFTGEDHI--GKVSFPPVQAVPSFPSSFPHLFSGKDHLRC---LIPCAIDQDP 243
+ GF I G +++P QA D L+P DQ P
Sbjct: 111 KTEIAQKGF--GRSIPAGFLTYPVSQAA--------------DITAFKATLVPVGDDQLP 154
Query: 244 YFRMTRDVAPRIG--YHKPALIE-------SSFFPALQGETGKMSASDPNSAIYVTDSAK 294
TR++ R Y L+E + P L G+ KMS S N AIY++D A
Sbjct: 155 MIEQTREIVRRFNSLYGTDVLVEPEALLPEAGRLPGLDGK-AKMSKSLGN-AIYLSDDAD 212
Query: 295 AIKNKI 300
IK K+
Sbjct: 213 TIKKKV 218
>gnl|CDD|173893 cd00395, Tyr_Trp_RS_core, catalytic core domain of tyrosinyl-tRNA
and tryptophanyl-tRNA synthetase. Tyrosinyl-tRNA
synthetase (TyrRS)/Tryptophanyl-tRNA synthetase (TrpRS)
catalytic core domain. These enzymes attach Tyr or Trp,
respectively, to the appropriate tRNA. These class I
enzymes are homodimers, which aminoacylate the 2'-OH of
the nucleotide at the 3' of the appropriate tRNA. The
core domain is based on the Rossman fold and is
responsible for the ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. It contains the class
I characteristic HIGH and KMSKS motifs, which are
involved in ATP binding.
Length = 273
Score = 42.7 bits (100), Expect = 1e-04
Identities = 44/243 (18%), Positives = 76/243 (31%), Gaps = 49/243 (20%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARE 147
LY G P++++LH+GHL+ + + Q A P+ + + E E
Sbjct: 2 LYCGIDPTADSLHIGHLIGLLTFRRFQHAGHRPIFLIGGQTGIIGDPSGKKSERTLNDPE 61
Query: 148 N--------AKDIIACGFDVTKT--FIFSDFDYVGGAFYKNMVKVAKCVTYNKVVGIFGF 197
A +A G T +F++ D+ G + ++ K V +
Sbjct: 62 EVRQNIRRIAAQYLAVGIFEDPTQATLFNNSDWPGPLAHIQFLR-----DLGKHVYVNYM 116
Query: 198 TGEDHI----------GKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPCAIDQDPYFR 246
+ + ++PP+QA F L + C + P DQ
Sbjct: 117 ERKTSFQSRSEEGISATEFTYPPLQAA-----DFLLLNT---TEGCDIQPGGSDQWGNIT 168
Query: 247 MTRDVAPR-----IGYHK-PALIESSFFPALQGETGKMSASDPNSAIYVT--DSAKAIKN 298
+ R++A R I L+ P K S+ T S
Sbjct: 169 LGRELARRFNGFTIAEGLTIPLVTKLDGP-------KFGKSESGPKWLDTEKTSPYEFYQ 221
Query: 299 KII 301
I
Sbjct: 222 FWI 224
>gnl|CDD|237360 PRK13354, PRK13354, tyrosyl-tRNA synthetase; Provisional.
Length = 410
Score = 42.2 bits (100), Expect = 2e-04
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG D + + ++G+ LY G P++ +LH+GHLVP M K QDA P+++
Sbjct: 12 RGAINQETDEEKLRKSLKEGKPLTLYLGFDPTAPSLHIGHLVPLMKLKRFQDAGHRPVIL 71
>gnl|CDD|235645 PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.
Length = 408
Score = 42.0 bits (100), Expect = 3e-04
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA 116
RG+ D + L+ E +Y G P++ +LHLGHLVP + + QDA
Sbjct: 13 RGLIEQITDEEE-LEEKLAKEPLRIYLGFDPTAPSLHLGHLVPLLKLRRFQDA 64
>gnl|CDD|173541 PTZ00348, PTZ00348, tyrosyl-tRNA synthetase; Provisional.
Length = 682
Score = 37.2 bits (86), Expect = 0.012
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 239 IDQDPYFRMTRDVAPRIGYH-KPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 297
+DQ + R+ IG KP ++ L+ KMS SDP+SAI++ D+ + +
Sbjct: 183 LDQRKVNMLAREYCDLIGRKLKPVILSHHMLAGLKQGQAKMSKSDPDSAIFMEDTEEDVA 242
Query: 298 NKI 300
KI
Sbjct: 243 RKI 245
>gnl|CDD|215478 PLN02886, PLN02886, aminoacyl-tRNA ligase.
Length = 389
Score = 36.3 bits (84), Expect = 0.019
Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 23/90 (25%)
Query: 234 LIPCAIDQDPYFRMTRDVAPRI-------------GYHKPAL-IESSFFP-------ALQ 272
L+P DQ + +TRD+A R+ G + + P +L
Sbjct: 187 LVPVGEDQKQHLELTRDIAERVNNLYGGRKWKKLGGRGGSVFKVPEALIPPAGARVMSLT 246
Query: 273 GETGKMSASDPN--SAIYVTDSAKAIKNKI 300
T KMS S P+ S I + D I NKI
Sbjct: 247 DGTSKMSKSAPSDQSRINLLDPPDVIANKI 276
>gnl|CDD|227204 COG4867, COG4867, Uncharacterized protein with a von Willebrand
factor type A (vWA) domain [General function prediction
only].
Length = 652
Score = 30.3 bits (68), Expect = 1.4
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 20 WEVSSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDA 79
W S + Y+++ D G + LDQ Q L G RR V DLND+LD
Sbjct: 140 WR-SGQAREKYEQIKDLLGRELLDQRFAGMKQALAGATDDD--RRRVTEMLDDLNDLLDK 196
Query: 80 YEKGE 84
+ +GE
Sbjct: 197 HARGE 201
>gnl|CDD|202477 pfam02936, COX4, Cytochrome c oxidase subunit IV. Cytochrome c
oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the
terminal oxidase in the mitochondrial electron transport
chain. This family is composed of cytochrome c oxidase
subunit IV. The Dictyostelium member of this family is
called COX VI. The yeast protein MTC3 appears to be the
yeast COX IV subunit.
Length = 142
Score = 28.5 bits (64), Expect = 2.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 120 PLVIQLTDDEKCMWKNLSVEESQRLAR 146
L++ L + EK WK+LS+EE + L R
Sbjct: 31 ELIMALREKEKGDWKSLSLEEKKALYR 57
>gnl|CDD|183452 PRK12337, PRK12337, 2-phosphoglycerate kinase; Provisional.
Length = 475
Score = 28.6 bits (64), Expect = 4.8
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 103 HLVP-FMFTKYLQDAFKVPLVIQLTDDE 129
HLVP ++ Y A VP+++ L D+
Sbjct: 368 HLVPGYLRHPYQAGALVVPMLVTLPDEA 395
>gnl|CDD|214538 smart00146, PI3Kc, Phosphoinositide 3-kinase, catalytic domain.
Phosphoinositide 3-kinase isoforms participate in a
variety of processes, including cell motility, the Ras
pathway, vesicle trafficking and secretion, and
apoptosis. These homologues may be either lipid kinases
and/or protein kinases: the former phosphorylate the
3-position in the inositol ring of inositol
phospholipids. The ataxia telangiectesia-mutated gene
produced, the targets of rapamycin (TOR) and the
DNA-dependent kinase have not been found to possess
lipid kinase activity. Some of this family possess PI-4
kinase activities.
Length = 240
Score = 28.0 bits (63), Expect = 6.1
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 23/86 (26%)
Query: 70 HRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDE 129
H D IL K F VPF T + D V+ +
Sbjct: 162 HIDFGFILGNGPKLFGF---------------PERVPFRLTPEMVD------VMGDSGYF 200
Query: 130 KCMWKNLSVEESQRLARENAKDIIAC 155
E + R R+N+ I++
Sbjct: 201 GLFRSL--CERALRALRKNSNLIMSL 224
>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD.
Length = 587
Score = 27.8 bits (62), Expect = 9.1
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 198 TGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDH 230
G+ H +P + SF SS S
Sbjct: 21 QGKSHFTPYRYPFIDKASSFSSSSSSSSSSGGD 53
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.429
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,714,082
Number of extensions: 1622529
Number of successful extensions: 1586
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1555
Number of HSP's successfully gapped: 33
Length of query: 322
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 225
Effective length of database: 6,635,264
Effective search space: 1492934400
Effective search space used: 1492934400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)