RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 020745
(322 letters)
>d1r6ta2 c.26.1.1 (A:82-467) Tryptophanyl-tRNA synthetase (TrpRS)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 280 bits (718), Expect = 2e-93
Identities = 190/291 (65%), Positives = 238/291 (81%), Gaps = 4/291 (1%)
Query: 14 EQVVSPWEV--SSSGKIDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHR 71
E V PW V SS+ IDYDKLI +FG ++D+ L++R++R TG+ PH FLRRG+FF+HR
Sbjct: 1 EDFVDPWTVQTSSAKGIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHR 60
Query: 72 DLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKC 131
D+N +LDAYE + FYLYTGRGPSSEA+H+GHL+PF+FTK+LQD F VPLVIQ+TDDEK
Sbjct: 61 DMNQVLDAYENKKPFYLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKY 120
Query: 132 MWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVG--GAFYKNMVKVAKCVTYN 189
+WK+L+++++ A ENAKDIIACGFD+ KTFIFSD DY+G FYKN+VK+ K VT+N
Sbjct: 121 LWKDLTLDQAYGDAVENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFN 180
Query: 190 KVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTR 249
+V GIFGFT D IGK+SFP +QA PSF +SFP +F + ++CLIPCAIDQDPYFRMTR
Sbjct: 181 QVKGIFGFTDSDCIGKISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTR 240
Query: 250 DVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIKNKI 300
DVAPRIGY KPAL+ S+FFPALQG KMSASDPNS+I++TD+AK IK K+
Sbjct: 241 DVAPRIGYPKPALLHSTFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKV 291
>d2ts1a_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Bacillus
stearothermophilus, nca 1503 [TaxId: 1422]}
Length = 319
Score = 115 bits (290), Expect = 1e-30
Identities = 35/260 (13%), Positives = 74/260 (28%), Gaps = 9/260 (3%)
Query: 64 RGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVI 123
RG+ D D L E+ LY G P++++LH+GHL + + Q A P+ +
Sbjct: 10 RGLVNQTTDE-DGLRKLLNEERVTLYCGFDPTADSLHIGHLATILTMRRFQQAGHRPIAL 68
Query: 124 QLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDY------VGGAFYK 177
+ E A+E + A + F+ + D +
Sbjct: 69 VGGATGLIGDPSGKKSERTLNAKETVEAWSARIKEQLGRFLDFEADGNPAKIKNNYDWIG 128
Query: 178 NMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPV-QAVPSFPSSFPHLFSGKDHLRCLIP 236
+ + K + ++ + + S+ + F
Sbjct: 129 PLDVITFLRDVGKHFSVNYMMAKESVQSRIETGISFTEFSYMMLQAYDFLRLYETEGCRL 188
Query: 237 CAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAI 296
D + +T + A P + G + I++ +
Sbjct: 189 QIGGSDQWGNITAGLELIRKTKGEARAFGLTIPLVTKADGTKFGKTESGTIWLDKEKTSP 248
Query: 297 KNKI-ILLKCADKQVCIFWR 315
+ D+ V + +
Sbjct: 249 YEFYQFWINTDDRDVIRYLK 268
>d1jila_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS)
{Staphylococcus aureus [TaxId: 1280]}
Length = 323
Score = 97.5 bits (242), Expect = 6e-24
Identities = 36/262 (13%), Positives = 82/262 (31%), Gaps = 8/262 (3%)
Query: 61 FLRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA--FK 118
RG+ + D ++ E+ LY G P++++LH+GHL+PF+ + Q+
Sbjct: 8 LKWRGLIYQQTDE-QGIEDLLNKEQVTLYCGADPTADSLHIGHLLPFLTLRRFQEHGHRP 66
Query: 119 VPLVIQLTDDEKCM-WKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA--F 175
+ L+ T K+ + + I+ F + +
Sbjct: 67 IVLIGGGTGMIGDPSGKSEERVLQTEEQVDKNIEGISKQMHNIFEFGTDHGAVLVNNRDW 126
Query: 176 YKNMVKVAKCVTYNKVVGIFGFTG-EDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCL 234
+ ++ Y K VG+ G + ++ ++ F +
Sbjct: 127 LGQISLISFLRDYGKHVGVNYMLGKDSIQSRLEHGISYTEFTYTILQAIDFGHLNRELNC 186
Query: 235 IPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAK 294
D + +T + + P + GK + A+++
Sbjct: 187 KIQVGGSDQWGNITSGIELMRRMYGQTDAYGLTIPLVTKSDGKKFGKSESGAVWLDAEKT 246
Query: 295 AIKNKI-ILLKCADKQVCIFWR 315
+ + +D+ V F +
Sbjct: 247 SPYEFYQFWINQSDEDVIKFLK 268
>d1n3la_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 339
Score = 97.3 bits (241), Expect = 1e-23
Identities = 45/261 (17%), Positives = 77/261 (29%), Gaps = 31/261 (11%)
Query: 62 LRRGV--FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDA--- 116
+ R + L +IL K + +Y G + + H+ + VP A
Sbjct: 11 ITRNLQEVLGEEKLKEIL----KERELKIYWGTATTGK-PHVAYFVPMSKIADFLKAGCE 65
Query: 117 --FKVPLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA 174
+ D+ K W L + + G + K DY
Sbjct: 66 VTILFADLHAYLDNMKAPW-ELLELRVSYYENVIKAMLESIGVPLEKLKFIKGTDYQLSK 124
Query: 175 FY-----KNMVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKD 229
Y + V + + + + + +P +QA+
Sbjct: 125 EYTLDVYRLSSVVTQHDSKKAGAEVVKQVEHPLLSGLLYPGLQALDEEYLKV-------- 176
Query: 230 HLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYV 289
IDQ F P +GY K + + P L KMS+S+ S I +
Sbjct: 177 ---DAQFGGIDQRKIFTFAEKYLPALGYSKRVHLMNPMVPGLT--GSKMSSSEEESKIDL 231
Query: 290 TDSAKAIKNKIILLKCADKQV 310
D + +K K+ C V
Sbjct: 232 LDRKEDVKKKLKKAFCEPGNV 252
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus
thermophilus [TaxId: 274]}
Length = 343
Score = 97.0 bits (240), Expect = 1e-23
Identities = 31/259 (11%), Positives = 69/259 (26%), Gaps = 7/259 (2%)
Query: 62 LRRGVFFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPL 121
L+RG + ++L ++G + G P+ LHLGH V + Q+ +
Sbjct: 11 LKRGAEEIVPE-EELLAKLKEGRPLTVKLGADPTRPDLHLGHAVVLRKMRQFQELGHKVV 69
Query: 122 VIQ---LTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGAFYKN 178
+I ++ + F+ + +
Sbjct: 70 LIIGDFTGMIGDPSGRSKTRPPLTLEETRENAKTYVAQAGKILRQEPHLFELRYNSEWLE 129
Query: 179 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRC-LIPC 237
+ + V ++ + + K + +R +
Sbjct: 130 GLTFKEVVRLTSLMTVAQMLEREDFKKRYEAGIPISLHELLYPFAQAYDSVAIRADVEMG 189
Query: 238 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 297
DQ + R+V G L G ++ I +T+ +A+
Sbjct: 190 GTDQRFNLLVGREVQRAYGQSPQVCFLMPLLVGLDGREKMS--KSLDNYIGLTEPPEAMF 247
Query: 298 NKIILLKCADKQVCIFWRT 316
K++ + T
Sbjct: 248 KKLMRVPDPLLPSYFRLLT 266
>d1i6la_ c.26.1.1 (A:) Tryptophanyl-tRNA synthetase (TrpRS)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 326
Score = 73.3 bits (179), Expect = 3e-15
Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 13/241 (5%)
Query: 88 LYTGRGPSSEALHLGHLVPFMFTKYLQDAFKVPLVIQLTDDEKCMWKNLSVEESQRLARE 147
+++G PS + +G+ + ++++ + + D + E ++ R
Sbjct: 4 IFSGIQPSGV-ITIGNYIG-ALRQFVELQHEYNCYFCIVDQHA-ITVWQDPHELRQNIRR 60
Query: 148 NAKDIIACGFDVTKTFIFSDFDYVGGAFYKNMVKVAKCVTY----NKVVGIFGFTGEDHI 203
A +A G D T+ +F + A M++ + +
Sbjct: 61 LAALYLAVGIDPTQATLFIQSEVPAHAQAAWMLQCIVYIGELERMTQFKEKSAGKEAVSA 120
Query: 204 GKVSFPPVQAVPSFPSSFPHLFSGKDHLRCLIPCAIDQDPYFRMTRDVAPRIGYHKPALI 263
G +++PP+ A + + G+D + + +D R + + +
Sbjct: 121 GLLTYPPLMAADILLYNTDIVPVGEDQKQHIELT---RDLAERFNKRYGELFTIPEARIP 177
Query: 264 -ESSFFPALQGETGKMSASDPN--SAIYVTDSAKAIKNKIILLKCADKQVCIFWRTRKCG 320
+ +L T KMS SDPN + I + D AK I+ KI + + + K G
Sbjct: 178 KVGARIMSLVDPTKKMSKSDPNPKAYITLLDDAKTIEKKIKSAVTDSEGTIRYDKEAKPG 237
Query: 321 I 321
I
Sbjct: 238 I 238
>d1j1ua_ c.26.1.1 (A:) Tyrosyl-tRNA synthetase (TyrRS) {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 306
Score = 68.1 bits (165), Expect = 1e-13
Identities = 44/254 (17%), Positives = 81/254 (31%), Gaps = 27/254 (10%)
Query: 62 LRRGV--FFAHRDLNDILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAFKV 119
++R + +L ++L EK Y G PS + +HLGH + LQ+A
Sbjct: 7 IKRNTSEIISEEELREVLKKDEKS----AYIGFEPSGK-IHLGHYLQIKKMIDLQNA-GF 60
Query: 120 PLVIQLTDDEKCMWKNLSVEESQRLARENAKDIIACGFDVTKTFIFSDFDYVGGA-FYKN 178
++I L D + + ++E +++ N K A G +
Sbjct: 61 DIIILLADLHAYLNQKGELDEIRKIGDYNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVYR 120
Query: 179 MVKVAKCVTYNKVVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKDHLRCL-IPC 237
+ + + + E+ P + +L
Sbjct: 121 LALKTTLKRARRSMELIAREDENPKVAEVIYP-----------IMQVNDIHYLGVDVAVG 169
Query: 238 AIDQDPYFRMTRDVAPRIGYHKPALIESSFFPALQGETGKMSASDPNSAIYVTDSAKAIK 297
++Q + R+ + K I + L GE +S + I V DS + I+
Sbjct: 170 GMEQRKIHMLARE----LLPKKVVCIHNPVLTGLDGE--GKMSSSKGNFIAVDDSPEEIR 223
Query: 298 NKIILLKCADKQVC 311
KI C V
Sbjct: 224 AKIKKAYCPAGVVE 237
>d1ffya3 c.26.1.1 (A:1-200,A:395-644) Isoleucyl-tRNA synthetase
(IleRS) {Staphylococcus aureus [TaxId: 1280]}
Length = 450
Score = 29.2 bits (64), Expect = 0.74
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 76 ILDAYEKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAF 117
L+ + E F L+ G ++ LH+GH K L+D
Sbjct: 40 ALEKNKGNETFILHDGPPYANGNLHMGHA----LNKILKDFI 77
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 28.4 bits (62), Expect = 0.82
Identities = 7/58 (12%), Positives = 14/58 (24%)
Query: 28 IDYDKLIDKFGCQRLDQSLVDRVQRLTGRPPHVFLRRGVFFAHRDLNDILDAYEKGEK 85
+ I + V+ + R + L DI+ + K
Sbjct: 132 LSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDIVTCVQSSRK 189
>d1ivsa4 c.26.1.1 (A:1-189,A:343-578) Valyl-tRNA synthetase (ValRS)
{Thermus thermophilus [TaxId: 274]}
Length = 425
Score = 26.8 bits (58), Expect = 3.9
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 4/37 (10%)
Query: 81 EKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAF 117
F ++ + +LH+GH LQDA
Sbjct: 31 SGKPPFVIFMPPPNVTGSLHMGHA----LDNSLQDAL 63
>d1h3na3 c.26.1.1 (A:1-225,A:418-686) Leucyl-tRNA synthetase (LeuRS)
{Thermus thermophilus [TaxId: 274]}
Length = 494
Score = 26.9 bits (58), Expect = 4.4
Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 81 EKGEKFYLYTGRGPSSEALHLGHLVPFMFTKYLQDAF 117
K Y+ S LH+GH + + D
Sbjct: 30 GGRGKQYVLVMFPYPSGDLHMGH----LKNYTMGDVL 62
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV
{Cow (Bos taurus) [TaxId: 9913]}
Length = 144
Score = 24.7 bits (54), Expect = 10.0
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 120 PLVIQLTDDEKCMWKNLSVEESQRLAR 146
L + EK W +LS++E L R
Sbjct: 32 ASQKALKEKEKASWSSLSIDEKVELYR 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.429
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,246,230
Number of extensions: 59403
Number of successful extensions: 229
Number of sequences better than 10.0: 1
Number of HSP's gapped: 224
Number of HSP's successfully gapped: 16
Length of query: 322
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 237
Effective length of database: 1,240,546
Effective search space: 294009402
Effective search space used: 294009402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.7 bits)