BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020747
(322 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 224 bits (570), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 130/325 (40%), Positives = 188/325 (57%), Gaps = 13/325 (4%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELDGATERLHLFKA 65
+ + VCVTGASGF+ SWLV LL+RGYTV+ATVRDP N K +HL +L A L L+KA
Sbjct: 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLWKA 63
Query: 66 NLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRV 125
+L +EGSFD A+ GC GVFH A+P+ F S +P+ +++ P + G L +++SCA +++R+
Sbjct: 64 DLADEGSFDEAIKGCTGVFHVATPMDFESKDPENEVIKPTIEGMLGIMKSCAAAKTVRRL 123
Query: 126 VLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK--EW-YSLAKTLAEEAAWKFAKE 182
V TSS G + + E + V DE+ +S+ C+ K W Y ++KTLAE+AAWK+AKE
Sbjct: 124 VFTSSAGTVNIQEHQLP---VYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAKE 180
Query: 183 NGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQ---SFAFPYIFVEIRDVVYAHIR 239
N ID + I P V+GPF + L+ I G++ S FV + D+ AHI
Sbjct: 181 NNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHIY 240
Query: 240 ALEVPKASGRYLLAGSVAQHSDILKFLREHYP--TLLRSGKLEEKYQPTIKVSQERAKSL 297
E PKA GRY+ + D+ K LRE YP + K ++ ++ S ++ L
Sbjct: 241 LFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLTDL 300
Query: 298 GINFT-PWEVGVRGCIESLMEKGFL 321
G F E G +++ KG L
Sbjct: 301 GFEFKYSLEDMFTGAVDTCRAKGLL 325
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 199 bits (507), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 113/277 (40%), Positives = 159/277 (57%), Gaps = 14/277 (5%)
Query: 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDP-NSPKTEHLRELDGATERLHLFKAN 66
+K CV G +GFVAS LVKLLLQ+GY V TVRDP N K HL EL + L +F+A+
Sbjct: 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGD-LKIFRAD 67
Query: 67 LLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVV 126
L +E SF++ + GCD VFH A+PV F S++P+ D++ PA+ G +NV+++C + S+KRV+
Sbjct: 68 LTDELSFEAPIAGCDFVFHVATPVHFASEDPENDMIKPAIQGVVNVMKACTRAKSVKRVI 127
Query: 127 LTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKEN-KEW-YSLAKTLAEEAAWKFAKENG 184
LTSS A+ +N+ T VV ++ W L W Y +KTLAE+AAWKFA+EN
Sbjct: 128 LTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEENN 187
Query: 185 IDLVAIHPGTVIGPFFQP----------ILNFGAEVILNLINGDQSFAFPYIFVEIRDVV 234
IDL+ + P + G L G E ++N + G Q + + DV
Sbjct: 188 IDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDVC 247
Query: 235 YAHIRALEVPKASGRYLLAGSVAQHSDILKFLREHYP 271
AHI E ASGRY+ + ++ KFL + YP
Sbjct: 248 RAHIFVAEKESASGRYICCAANTSVPELAKFLSKRYP 284
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 158 bits (400), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 97/268 (36%), Positives = 148/268 (55%), Gaps = 10/268 (3%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVR-DPNSPK-TEHLRELDGATERLHLFKANLL 68
VCVTG +GF+ SW++K LL+ GY+V T+R DP + L L GA+E+LH F A+L
Sbjct: 4 VCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNADLS 63
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
SF +A++GC G+FHTASP+ F P+ + V G L +L++C ++KR + T
Sbjct: 64 NPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYT 123
Query: 129 SSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEW---YSLAKTLAEEAAWKFAKENGI 185
SS A+ N V+DE+ +S+ L + K + Y+++KTLAE+A +F ++NGI
Sbjct: 124 SSGSAVSFNGKDKD---VLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGI 180
Query: 186 DLVAIHPGTVIGPFFQPILNFGAEVILNLING--DQSFAFPYIFVEIRDVVYAHIRALEV 243
D+V + ++G F P L E L L+ G +Q + V + DV AHI LE
Sbjct: 181 DVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLLEN 240
Query: 244 PKASGRYLLAGSVAQHSDILKFLREHYP 271
GRY + + ++ + L YP
Sbjct: 241 SVPGGRYNCSPFIVPIEEMSQLLSAKYP 268
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 118 bits (295), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 107/319 (33%), Positives = 159/319 (49%), Gaps = 33/319 (10%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKA- 65
E +V VTGA+GFVAS +V+ LL+ GY V+ T R ++ K +L++ A A
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR--SASKLANLQKRWDAKYPGRFETAV 67
Query: 66 --NLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIK 123
++L++G++D + G GV H AS V F N ++V PA+ GTLN LR+ A S+K
Sbjct: 68 VEDMLKQGAYDEVIKGAAGVAHIASVVSF--SNKYDEVVTPAIGGTLNALRAAAATPSVK 125
Query: 124 RVVLTSSIGAMLLNETPMTPDVVIDE-TWF--------SNPVLCKENKEW-YSLAKTLAE 173
R VLTSS + L+ + P + +DE +W + P + W Y+ +KT AE
Sbjct: 126 RFVLTSSTVSALIPK-PNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAE 184
Query: 174 EAAWKFAKENG--IDLVAIHPGTVIGPFFQPILNFGAEV--ILNLINGDQSFAF----PY 225
AAWKF EN L A+ P IG F P G+ +++L NG+ S A P
Sbjct: 185 LAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQ 244
Query: 226 IFVEIRDVVYAHIRALEVPKASGR--YLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKY 283
+V D+ H+ L +P+ R Y AG+ ++ +L R+ YP+ ++
Sbjct: 245 YYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNT-VLATFRKLYPSKTFPADFPDQG 303
Query: 284 QPTIKV----SQERAKSLG 298
Q K S E KSLG
Sbjct: 304 QDLSKFDTAPSLEILKSLG 322
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 110 bits (276), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 106/319 (33%), Positives = 155/319 (48%), Gaps = 33/319 (10%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKA- 65
E +V VTGA+GFVAS +V+ LL+ GY V+ T R ++ K +L++ A A
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTAR--SASKLANLQKRWDAKYPGRFETAV 67
Query: 66 --NLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIK 123
+ L++G++D + G GV H AS V F N ++V PA+ GTLN LR+ A S+K
Sbjct: 68 VEDXLKQGAYDEVIKGAAGVAHIASVVSF--SNKYDEVVTPAIGGTLNALRAAAATPSVK 125
Query: 124 RVVLTSSIGAMLLNETPMTPDVVIDE-TWF--------SNPVLCKENKEW-YSLAKTLAE 173
R VLTSS + L+ + P + +DE +W + P + W Y+ +KT AE
Sbjct: 126 RFVLTSSTVSALIPK-PNVEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAE 184
Query: 174 EAAWKFAKENG--IDLVAIHPGTVIGPFFQPILN--FGAEVILNLINGDQSFAF----PY 225
AAWKF EN L A+ P IG F P + +L NG+ S A P
Sbjct: 185 LAAWKFXDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWXXSLFNGEVSPALALXPPQ 244
Query: 226 IFVEIRDVVYAHIRALEVPKASGR--YLLAGSVAQHSDILKFLREHYPTLLRSGKLEEKY 283
+V D+ H+ L +P+ R Y AG+ ++ +L R+ YP+ ++
Sbjct: 245 YYVSAVDIGLLHLGCLVLPQIERRRVYGTAGTFDWNT-VLATFRKLYPSKTFPADFPDQG 303
Query: 284 QPTIKV----SQERAKSLG 298
Q K S E KSLG
Sbjct: 304 QDLSKFDTAPSLEILKSLG 322
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ +TGA GF+AS + + L G+ V A+ + K EH+ E D + HL ++E
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIAS----DWKKNEHMTE-DMFCDEFHLVDLRVME- 85
Query: 71 GSFDSAVDGCDGVFHTASP---VIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVL 127
+ +G D VF+ A+ + F+ N + I+ M + N++ + A+++ IKR
Sbjct: 86 -NCLKVTEGVDHVFNLAADMGGMGFIQSN-HSVIMYNNTMISFNMIEA-ARINGIKRFFY 142
Query: 128 TSSIGAMLLNETPMTPDVVIDET--WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGI 185
SS + T +V + E+ W + P ++ Y L K EE + K+ GI
Sbjct: 143 ASSACIYPEFKQLETTNVSLKESDAWPAEP------QDAYGLEKLATEELCKHYNKDFGI 196
Query: 186 DLVAIHPGTVIGPF 199
+ + GPF
Sbjct: 197 ECRIGRFHNIYGPF 210
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ +TGA GF+AS + + L G+ V A+ + K EH+ E D + HL ++E
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIAS----DWKKNEHMTE-DMFCDEFHLVDLRVME- 85
Query: 71 GSFDSAVDGCDGVFHTASP---VIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVL 127
+ +G D VF+ A+ + F+ N + I+ M + N++ + A+++ IKR
Sbjct: 86 -NCLKVTEGVDHVFNLAADMGGMGFIQSN-HSVIMYNNTMISFNMIEA-ARINGIKRFFY 142
Query: 128 TSSIGAMLLNETPMTPDVVIDET--WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGI 185
SS + T +V + E+ W + P ++ Y L K EE + K+ GI
Sbjct: 143 ASSACIYPEFKQLETTNVSLKESDAWPAEP------QDAYGLEKLATEELCKHYNKDFGI 196
Query: 186 DLVAIHPGTVIGPF 199
+ + GPF
Sbjct: 197 ECRIGRFHNIYGPF 210
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ +TGA GF+AS + + L G+ V A+ + K EH+ E D + HL ++E
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIAS----DWKKNEHMTE-DMFCDEFHLVDLRVME- 85
Query: 71 GSFDSAVDGCDGVFHTASP---VIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVL 127
+ +G D VF+ A+ + F+ N + I+ M + N++ + A+++ IKR
Sbjct: 86 -NCLKVTEGVDHVFNLAADMGGMGFIQSN-HSVIMYNNTMISFNMIEA-ARINGIKRFFY 142
Query: 128 TSSIGAMLLNETPMTPDVVIDET--WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGI 185
SS + T +V + E+ W + P ++ Y L + EE + K+ GI
Sbjct: 143 ASSACIYPEFKQLETTNVSLKESDAWPAEP------QDAYGLERLATEELCKHYNKDFGI 196
Query: 186 DLVAIHPGTVIGPF 199
+ + GPF
Sbjct: 197 ECRIGRFHNIYGPF 210
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ +TGA GF+AS + + L G+ V A+ + K EH+ E D + HL ++E
Sbjct: 32 ISITGAGGFIASHIARRLKHEGHYVIAS----DWKKNEHMTE-DMFCDEFHLVDLRVME- 85
Query: 71 GSFDSAVDGCDGVFHTASP---VIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVL 127
+ +G D VF+ A+ + F+ N + I+ M + N++ + A+++ IKR
Sbjct: 86 -NCLKVTEGVDHVFNLAADMGGMGFIQSN-HSVIMYNNTMISFNMIEA-ARINGIKRFFY 142
Query: 128 TSSIGAMLLNETPMTPDVVIDET--WFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGI 185
SS + T +V + E+ W + P ++ + L K EE + K+ GI
Sbjct: 143 ASSACIYPEFKQLETTNVSLKESDAWPAEP------QDAFGLEKLATEELCKHYNKDFGI 196
Query: 186 DLVAIHPGTVIGPF 199
+ + GPF
Sbjct: 197 ECRIGRFHNIYGPF 210
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 85/215 (39%), Gaps = 52/215 (24%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRD-PNSPKTEHLRELDGATERLHLFKANL 67
K V VTG +GF SWL L + G VK D P P + L+ E H+
Sbjct: 10 KRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPTVPSLFEIVRLNDLMES-HIGDIRD 68
Query: 68 LEEGSFDSAVDGCDGVFHTAS-PVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVV 126
E+ A + VFH A+ P++ LS VMGT+++L + +V +IK VV
Sbjct: 69 FEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGTVHLLETVKQVGNIKAVV 128
Query: 127 LTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEW---------------YSLAKTL 171
++ D+ C +N+EW YS +K
Sbjct: 129 -----------------NITSDK--------CYDNREWVWGYRENEPMGGYDPYSNSKGC 163
Query: 172 AEEAAWKFA---------KENGIDLVAIHPGTVIG 197
AE A F +++G+ L ++ G VIG
Sbjct: 164 AELVASAFRNSFFNPANYEQHGVGLASVRAGNVIG 198
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 14/128 (10%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K + + GASGFV S L+ L RG+ V A VR P K E+ E L + KA++
Sbjct: 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIEN--------EHLKVKKADV- 55
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
S D + C G S +NP DI D + L ++ K + R +
Sbjct: 56 --SSLDEVCEVCKGADAVISAFNPGWNNP--DIYDETIKVYLTIIDGVKKA-GVNRFLXV 110
Query: 129 SSIGAMLL 136
G++ +
Sbjct: 111 GGAGSLFI 118
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 65/239 (27%), Positives = 107/239 (44%), Gaps = 34/239 (14%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ VTG +GF+ S LV L++ GY V V + +S + RE + LH+ L++
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEV-VVVDNLSSGR----REFVNPSAELHVRD---LKD 54
Query: 71 GSFDSAVDGCDGVFH-TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLTS 129
S+ + + G D VFH A+P + LS + V+ T NVL A+ ++ VV S
Sbjct: 55 YSWGAGIKG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVL-EWARQTGVRTVVFAS 112
Query: 130 SIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVA 189
S + TP+ +E + P+ Y AK E +A+ G+ +A
Sbjct: 113 SSTVYGDADVIPTPE---EEPY--KPISV------YGAAKAAGEVMCATYARLFGVRCLA 161
Query: 190 IHPGTVIGPFFQP--ILNFGAEVILN------LINGDQSFAFPYIFVEIRDVVYAHIRA 240
+ V+GP + I +F ++ N L +G Q ++ Y +RD V A + A
Sbjct: 162 VRYANVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLY----VRDAVEATLAA 216
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 102/242 (42%), Gaps = 44/242 (18%)
Query: 11 VCVTGASGFVASWLVKLLLQRGY---TVKATVRDPNSPKTEHLRELDGATERLHLFKANL 67
+ VTG +GF+ S LV L++ GY V RD H+R+
Sbjct: 3 IVVTGGAGFIGSHLVDKLVELGYEVVVVDIVQRDTGGSAELHVRD--------------- 47
Query: 68 LEEGSFDSAVDGCDGVFH-TASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVV 126
L++ S+ + + G D VFH A+P + LS + V+ T NVL A+ ++ VV
Sbjct: 48 LKDYSWGAGIKG-DVVFHFAANPEVRLSTTEPIVHFNENVVATFNVL-EWARQTGVRTVV 105
Query: 127 LTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGID 186
SS + TP+ +E + P+ Y AK E +A+ G+
Sbjct: 106 FASSSTVYGDADVIPTPE---EEPY--KPISV------YGAAKAAGEVMCATYARLFGVR 154
Query: 187 LVAIHPGTVIGPFFQP--ILNFGAEVILN------LINGDQSFAFPYIFVEIRDVVYAHI 238
+A+ V+GP + I +F ++ N L +G Q ++ Y +RD V A +
Sbjct: 155 CLAVRYANVVGPRLRHGVIYDFIMKLRRNPNVLEVLGDGTQRKSYLY----VRDAVEATL 210
Query: 239 RA 240
A
Sbjct: 211 AA 212
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8 Udp-Glucose
4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Udp-glucose
4- Epimerase Complex With Nad
Length = 311
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/259 (23%), Positives = 100/259 (38%), Gaps = 58/259 (22%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVK-----ATVRDPNSPKTEHLRELDGATERLHLFKA 65
V VTG +GF+ S +V+ LL RG V AT + N PK + F+
Sbjct: 3 VLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRENVPKG------------VPFFRV 50
Query: 66 NLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIV----DPAV-----MGTLNVLRSC 116
+L ++ +G + F P QA + DP + + L
Sbjct: 51 DLRDK-------EGVERAFREFRPTHVSHQAAQASVKVSVEDPVLDFEVNLLGGLNLLEA 103
Query: 117 AKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAA 176
+ + ++++V S+ GA + E P +ETW P K Y+ +K E
Sbjct: 104 CRQYGVEKLVFASTGGA-IYGEVPEGERA--EETWPPRP------KSPYAASKAAFEHYL 154
Query: 177 WKFAKENGIDLVAIHPGTVIGPFFQP-----ILNFGAEVILNLI---------NGDQSFA 222
+ + G+ V++ G V GP P ++ AE +L + GD+
Sbjct: 155 SVYGQSYGLKWVSLRYGNVYGPRQDPHGEAGVVAIFAERVLKGLPVTLYARKTPGDEGCV 214
Query: 223 FPYIFVEIRDVVYAHIRAL 241
Y++V DV AH AL
Sbjct: 215 RDYVYVG--DVAEAHALAL 231
>pdb|3A1N|A Chain A, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A1N|B Chain B, Crystal Structure Of L-Threonine Dehydrogenase From
Hyperthermophilic Archaeon Thermoplasma Volcanium
pdb|3A4V|A Chain A, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A4V|B Chain B, Crystal Structure Of Pyruvate Bound L-Threonine
Dehydrogenase From Hyperthermophilic Archaeon
Thermoplasma Volcanium
Length = 317
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 85/189 (44%), Gaps = 24/189 (12%)
Query: 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLE 69
++ VTG+SG + + LV L ++ Y K N ++ ++ G + + L +N E
Sbjct: 1 MILVTGSSGQIGTELVPYLAEK-YGKK------NVIASDIVQRDTGGIKFITLDVSNRDE 53
Query: 70 EGSFDSAVD--GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVL 127
D AV+ D +FH A + + A + GT N+L AK H +++VV+
Sbjct: 54 ---IDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNIL-EAAKQHRVEKVVI 109
Query: 128 TSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDL 187
S+IG P TP + + P + Y + K AE + ++ G+D+
Sbjct: 110 PSTIGVF----GPETPKNKVPSITITRP------RTMYGVTKIAAELLGQYYYEKFGLDV 159
Query: 188 VAI-HPGTV 195
++ +PG +
Sbjct: 160 RSLRYPGII 168
>pdb|1RKX|A Chain A, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|B Chain B, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|C Chain C, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
pdb|1RKX|D Chain D, Crystal Structure At 1.8 Angstrom Of Cdp-D-Glucose 4,6-
Dehydratase From Yersinia Pseudotuberculosis
Length = 357
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKA-TVRDPNSPKT-EHLRELDGATERL-HLF 63
+ K V VTG +GF WL L G TVK ++ P P E R DG + +
Sbjct: 8 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPSLFETARVADGMQSEIGDIR 67
Query: 64 KANLLEEG--SFDSAVDGCDGVFHTAS-PVIFLSDNPQADIVDPAVMGTLNVLRSCAKVH 120
N L E F + VFH A+ P++ LS + + VMGT+ +L + V
Sbjct: 68 DQNKLLESIREFQPEI-----VFHMAAQPLVRLSYSEPVETYSTNVMGTVYLLEAIRHVG 122
Query: 121 SIKRVVLTSS 130
+K VV +S
Sbjct: 123 GVKAVVNITS 132
>pdb|1Z73|A Chain A, Crystal Structure Of E. Coli Arna Dehydrogenase
(decarboxylase) Domain, S433a Mutant
Length = 358
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 99/260 (38%), Gaps = 53/260 (20%)
Query: 11 VCVTGASGFVASWLV-KLLLQRGYTV-------KATVRDPNSPKTEHLRELDGATERLHL 62
V + G +GF+ + L +LL + Y V A R N P H ++G
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHP---HFHFVEGDIS---- 68
Query: 63 FKANLLEEGSFDSAVDGCDGVF---HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKV 119
+ + V CD V A+P+ + + NP + + L ++R C K
Sbjct: 69 -----IHSEWIEYHVKKCDVVLPLVAIATPIEY-TRNP-LRVFELDFEENLRIIRYCVKY 121
Query: 120 HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK-EW-YSLAKTLAEEAAW 177
KR++ S+ M D DE SN ++ NK W YS++K L + W
Sbjct: 122 R--KRIIFPSTAEVY-----GMCSDKYFDED-HSNLIVGPVNKPRWIYSVSKQLLDRVIW 173
Query: 178 KFAKENGIDLVAIHPGTVIGPFF---------------QPILNFGAEVILNLINGDQSFA 222
+ ++ G+ P +GP Q ILN + LI+G +
Sbjct: 174 AYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ-- 231
Query: 223 FPYIFVEIRDVVYAHIRALE 242
F +IRD + A R +E
Sbjct: 232 -KRCFTDIRDGIEALYRIIE 250
>pdb|2BLL|A Chain A, Apo-Structure Of The C-Terminal Decarboxylase Domain Of
Arna
Length = 345
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 99/260 (38%), Gaps = 53/260 (20%)
Query: 11 VCVTGASGFVASWLV-KLLLQRGYTV-------KATVRDPNSPKTEHLRELDGATERLHL 62
V + G +GF+ + L +LL + Y V A R N P H ++G
Sbjct: 3 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHP---HFHFVEGDIS---- 55
Query: 63 FKANLLEEGSFDSAVDGCDGVF---HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKV 119
+ + V CD V A+P+ + + NP + + L ++R C K
Sbjct: 56 -----IHSEWIEYHVKKCDVVLPLVAIATPIEY-TRNP-LRVFELDFEENLRIIRYCVKY 108
Query: 120 HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK-EW-YSLAKTLAEEAAW 177
KR++ S+ M D DE SN ++ NK W YS++K L + W
Sbjct: 109 R--KRIIFPSTSEVY-----GMCSDKYFDED-HSNLIVGPVNKPRWIYSVSKQLLDRVIW 160
Query: 178 KFAKENGIDLVAIHPGTVIGPFF---------------QPILNFGAEVILNLINGDQSFA 222
+ ++ G+ P +GP Q ILN + LI+G +
Sbjct: 161 AYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ-- 218
Query: 223 FPYIFVEIRDVVYAHIRALE 242
F +IRD + A R +E
Sbjct: 219 -KRCFTDIRDGIEALYRIIE 237
>pdb|1Z75|A Chain A, Crystal Structure Of Arna Dehydrogenase (decarboxylase)
Domain, R619m Mutant
Length = 358
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 99/260 (38%), Gaps = 53/260 (20%)
Query: 11 VCVTGASGFVASWLV-KLLLQRGYTV-------KATVRDPNSPKTEHLRELDGATERLHL 62
V + G +GF+ + L +LL + Y V A R N P H ++G
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHP---HFHFVEGDIS---- 68
Query: 63 FKANLLEEGSFDSAVDGCDGVF---HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKV 119
+ + V CD V A+P+ + + NP + + L ++R C K
Sbjct: 69 -----IHSEWIEYHVKKCDVVLPLVAIATPIEY-TRNP-LRVFELDFEENLRIIRYCVKY 121
Query: 120 HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK-EW-YSLAKTLAEEAAW 177
KR++ S+ M D DE SN ++ NK W YS++K L + W
Sbjct: 122 R--KRIIFPSTSEVY-----GMCSDKYFDED-HSNLIVGPVNKPRWIYSVSKQLLDRVIW 173
Query: 178 KFAKENGIDLVAIHPGTVIGPFF---------------QPILNFGAEVILNLINGDQSFA 222
+ ++ G+ P +GP Q ILN + LI+G +
Sbjct: 174 AYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ-- 231
Query: 223 FPYIFVEIRDVVYAHIRALE 242
F +IRD + A R +E
Sbjct: 232 -KRCFTDIRDGIEALYRIIE 250
>pdb|1U9J|A Chain A, Crystal Structure Of E. Coli Arna (Pmri) Decarboxylase
Domain
Length = 358
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 99/260 (38%), Gaps = 53/260 (20%)
Query: 11 VCVTGASGFVASWLV-KLLLQRGYTV-------KATVRDPNSPKTEHLRELDGATERLHL 62
V + G +GF+ + L +LL + Y V A R N P H ++G
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHP---HFHFVEGDIS---- 68
Query: 63 FKANLLEEGSFDSAVDGCDGVF---HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKV 119
+ + V CD V A+P+ + + NP + + L ++R C K
Sbjct: 69 -----IHSEWIEYHVKKCDVVLPLVAIATPIEY-TRNP-LRVFELDFEENLRIIRYCVKY 121
Query: 120 HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK-EW-YSLAKTLAEEAAW 177
KR++ S+ M D DE SN ++ NK W YS++K L + W
Sbjct: 122 R--KRIIFPSTSEVY-----GMCSDKYFDED-HSNLIVGPVNKPRWIYSVSKQLLDRVIW 173
Query: 178 KFAKENGIDLVAIHPGTVIGPFF---------------QPILNFGAEVILNLINGDQSFA 222
+ ++ G+ P +GP Q ILN + LI+G +
Sbjct: 174 AYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ-- 231
Query: 223 FPYIFVEIRDVVYAHIRALE 242
F +IRD + A R +E
Sbjct: 232 -KRCFTDIRDGIEALYRIIE 250
>pdb|1Z7B|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619e Mutant
Length = 358
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 99/260 (38%), Gaps = 53/260 (20%)
Query: 11 VCVTGASGFVASWLV-KLLLQRGYTV-------KATVRDPNSPKTEHLRELDGATERLHL 62
V + G +GF+ + L +LL + Y V A R N P H ++G
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHP---HFHFVEGDIS---- 68
Query: 63 FKANLLEEGSFDSAVDGCDGVF---HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKV 119
+ + V CD V A+P+ + + NP + + L ++R C K
Sbjct: 69 -----IHSEWIEYHVKKCDVVLPLVAIATPIEY-TRNP-LRVFELDFEENLRIIRYCVKY 121
Query: 120 HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK-EW-YSLAKTLAEEAAW 177
KR++ S+ M D DE SN ++ NK W YS++K L + W
Sbjct: 122 R--KRIIFPSTSEVY-----GMCSDKYFDED-HSNLIVGPVNKPRWIYSVSKQLLDRVIW 173
Query: 178 KFAKENGIDLVAIHPGTVIGPFF---------------QPILNFGAEVILNLINGDQSFA 222
+ ++ G+ P +GP Q ILN + LI+G +
Sbjct: 174 AYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ-- 231
Query: 223 FPYIFVEIRDVVYAHIRALE 242
F +IRD + A R +E
Sbjct: 232 -KRCFTDIRDGIEALYRIIE 250
>pdb|1Z74|A Chain A, Crystal Structure Of E.Coli Arna Dehydrogenase
(Decarboxylase) Domain, R619y Mutant
Length = 358
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 99/260 (38%), Gaps = 53/260 (20%)
Query: 11 VCVTGASGFVASWLV-KLLLQRGYTV-------KATVRDPNSPKTEHLRELDGATERLHL 62
V + G +GF+ + L +LL + Y V A R N P H ++G
Sbjct: 16 VLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISRFLNHP---HFHFVEGDIS---- 68
Query: 63 FKANLLEEGSFDSAVDGCDGVF---HTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKV 119
+ + V CD V A+P+ + + NP + + L ++R C K
Sbjct: 69 -----IHSEWIEYHVKKCDVVLPLVAIATPIEY-TRNP-LRVFELDFEENLRIIRYCVKY 121
Query: 120 HSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK-EW-YSLAKTLAEEAAW 177
KR++ S+ M D DE SN ++ NK W YS++K L + W
Sbjct: 122 R--KRIIFPSTSEVY-----GMCSDKYFDED-HSNLIVGPVNKPRWIYSVSKQLLDRVIW 173
Query: 178 KFAKENGIDLVAIHPGTVIGPFF---------------QPILNFGAEVILNLINGDQSFA 222
+ ++ G+ P +GP Q ILN + LI+G +
Sbjct: 174 AYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSPIKLIDGGKQ-- 231
Query: 223 FPYIFVEIRDVVYAHIRALE 242
F +IRD + A R +E
Sbjct: 232 -KRCFTDIRDGIEALYRIIE 250
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 100/244 (40%), Gaps = 48/244 (19%)
Query: 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFK 64
E + K + +TG +GFV S L L+ G+ V TV D + E E L
Sbjct: 2 EKDRKRILITGGAGFVGSHLTDKLMMDGHEV--TVVDNFFTGRKRNVEHWIGHENFELIN 59
Query: 65 ANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDP------AVMGTLNVLRSCAK 118
+++E + D ++H ASP +P + +P +GTLN+L +
Sbjct: 60 HDVVEPLYIE-----VDQIYHLASPA-----SPPNYMYNPIKTLKTNTIGTLNMLGLAKR 109
Query: 119 VHSIKRVVLTSSIGAMLLNETPMTPDV--VIDETW-FSNPVLCKENKEWYSLAKTLAEEA 175
V + R++L S+ +E P+V ++ W NP+ + Y K +AE
Sbjct: 110 VGA--RLLLAST------SEVYGDPEVHPQSEDYWGHVNPIGP---RACYDEGKRVAETM 158
Query: 176 AWKFAKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLI-------------NGDQSFA 222
+ + K+ G+++ GP +N G V+ N I +G Q+ A
Sbjct: 159 CYAYMKQEGVEVRVARIFNTFGPRMH--MNDG-RVVSNFILQALQGEPLTVYGSGSQTRA 215
Query: 223 FPYI 226
F Y+
Sbjct: 216 FQYV 219
>pdb|3A9W|A Chain A, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3A9W|B Chain B, Crystal Structure Of L-Threonine Bound L-Threonine
Dehydrogenase (Y137f) From Hyperthermophilic Archaeon
Thermoplasma Volcanium
pdb|3AJR|A Chain A, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
pdb|3AJR|B Chain B, Crystal Structure Of L-3-Hydroxynorvaline Bound
L-Threonine Dehydrogenase (Y137f) From Hyperthermophilic
Archaeon Thermoplasma Volcanium
Length = 317
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 24/189 (12%)
Query: 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLE 69
++ VTG+SG + + LV L ++ Y K N ++ ++ G + + L +N E
Sbjct: 1 MILVTGSSGQIGTELVPYLAEK-YGKK------NVIASDIVQRDTGGIKFITLDVSNRDE 53
Query: 70 EGSFDSAVD--GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVL 127
D AV+ D +FH A + + A + GT N+L AK H +++VV+
Sbjct: 54 ---IDRAVEKYSIDAIFHLAGILSAKGEKDPALAYKVNMNGTYNIL-EAAKQHRVEKVVI 109
Query: 128 TSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDL 187
S+IG P TP + + P + + + K AE + ++ G+D+
Sbjct: 110 PSTIGVF----GPETPKNKVPSITITRP------RTMFGVTKIAAELLGQYYYEKFGLDV 159
Query: 188 VAI-HPGTV 195
++ +PG +
Sbjct: 160 RSLRYPGII 168
>pdb|1Z7E|A Chain A, Crystal Structure Of Full Length Arna
pdb|1Z7E|B Chain B, Crystal Structure Of Full Length Arna
pdb|1Z7E|C Chain C, Crystal Structure Of Full Length Arna
pdb|1Z7E|D Chain D, Crystal Structure Of Full Length Arna
pdb|1Z7E|E Chain E, Crystal Structure Of Full Length Arna
pdb|1Z7E|F Chain F, Crystal Structure Of Full Length Arna
Length = 660
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 60/151 (39%), Gaps = 28/151 (18%)
Query: 109 TLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENK-EW-YS 166
L ++R C K KR++ S+ M D DE SN ++ NK W YS
Sbjct: 413 NLRIIRYCVKYR--KRIIFPSTSEVY-----GMCSDKYFDED-HSNLIVGPVNKPRWIYS 464
Query: 167 LAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFF---------------QPILNFGAEVI 211
++K L + W + ++ G+ P +GP Q ILN
Sbjct: 465 VSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNAARIGSSRAITQLILNLVEGSP 524
Query: 212 LNLINGDQSFAFPYIFVEIRDVVYAHIRALE 242
+ LI+G + F +IRD + A R +E
Sbjct: 525 IKLIDGGKQ---KRCFTDIRDGIEALYRIIE 552
>pdb|2Q1W|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
pdb|2Q1W|C Chain C, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmh In Complex With Nad+
Length = 333
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 58/245 (23%), Positives = 108/245 (44%), Gaps = 41/245 (16%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K V +TG G + S + +LLL+RG V + + + + EHL++ L + ++
Sbjct: 22 KKVFITGICGQIGSHIAELLLERGDKV-VGIDNFATGRREHLKD----HPNLTFVEGSIA 76
Query: 69 EEGSFDSAVDGC--DGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVV 126
+ + + D V HTA+ D+ D + V G+ NV+++ AK +++ R V
Sbjct: 77 DHALVNQLIGDLQPDAVVHTAASYK-DPDDWYNDTLTNCVGGS-NVVQA-AKKNNVGRFV 133
Query: 127 LTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGID 186
+ A+ P+ V +D NP Y+++K+ E+ + + +G+D
Sbjct: 134 YFQT--ALCYGVKPIQQPVRLDHP--RNPA-----NSSYAISKSANED----YLEYSGLD 180
Query: 187 LVAIHPGTVIGP---------FFQPILNFGAEVILNLINGDQSFAFPYIFVEIRDVVYAH 237
V V+GP FFQ L+ G + + D FV ++D+ A
Sbjct: 181 FVTFRLANVVGPRNVSGPLPIFFQR-LSEGKKCFVTKARRD--------FVFVKDLARAT 231
Query: 238 IRALE 242
+RA++
Sbjct: 232 VRAVD 236
>pdb|3RFT|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFT|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens
pdb|3RFV|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
pdb|3RFV|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens Complexed With Nadh And
Product
Length = 267
Score = 35.0 bits (79), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 14/122 (11%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K + VTGA+G L +++ +R + +R L LD A + +L
Sbjct: 4 KRLLVTGAAG----QLGRVMRERLAPMAEILR------LADLSPLDPAGPNEECVQCDLA 53
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
+ + ++ V GCDG+ H + + P I+ ++G N L A+ H R+V
Sbjct: 54 DANAVNAMVAGCDGIVHLGGISV---EKPFEQILQGNIIGLYN-LYEAARAHGQPRIVFA 109
Query: 129 SS 130
SS
Sbjct: 110 SS 111
>pdb|2BHM|A Chain A, Crystal Structure Of Virb8 From Brucella Suis
pdb|2BHM|B Chain B, Crystal Structure Of Virb8 From Brucella Suis
pdb|2BHM|C Chain C, Crystal Structure Of Virb8 From Brucella Suis
pdb|2BHM|D Chain D, Crystal Structure Of Virb8 From Brucella Suis
pdb|2BHM|E Chain E, Crystal Structure Of Virb8 From Brucella Suis
Length = 164
Score = 35.0 bits (79), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 136 LNETPMTPDVVIDETWFSNPVLCKENKEWYSLAK 169
L+E ++ D V+D+ W S V+ +E +WY+L K
Sbjct: 16 LDEKSVSYDTVMDKYWLSQYVIARETYDWYTLQK 49
>pdb|3RFX|A Chain A, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|B Chain B, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
pdb|3RFX|C Chain C, Crystal Structure Of Uronate Dehydrogenase From
Agrobacterium Tumefaciens, Y136a Mutant Complexed With
Nad
Length = 267
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 53/122 (43%), Gaps = 14/122 (11%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K + VTGA+G L +++ +R + +R L LD A + +L
Sbjct: 4 KRLLVTGAAG----QLGRVMRERLAPMAEILR------LADLSPLDPAGPNEECVQCDLA 53
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVLT 128
+ + ++ V GCDG+ H + + P I+ ++G N L A+ H R+V
Sbjct: 54 DANAVNAMVAGCDGIVHLGGISV---EKPFEQILQGNIIGLYN-LYEAARAHGQPRIVFA 109
Query: 129 SS 130
SS
Sbjct: 110 SS 111
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 34.7 bits (78), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 64/145 (44%), Gaps = 16/145 (11%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL-------DGATERLH 61
K+ +TG +G S+L + LL +GY V +R ++ T+ + + + A +LH
Sbjct: 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALMKLH 88
Query: 62 LFKANLLEEGSFDSAVD--GCDGVFHTAS----PVIFLSDNPQADIVDPAVMGTLNVLRS 115
A+L + S +D D V++ A+ V F + AD+V + L +RS
Sbjct: 89 Y--ADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEIPDYTADVVATGALRLLEAVRS 146
Query: 116 CAKVHSIKRVVLTSSIGAMLLNETP 140
+ S + V + + + TP
Sbjct: 147 HT-IDSGRTVKYYQAGSSEMFGSTP 170
>pdb|2X4G|A Chain A, Crystal Structure Of Pa4631, A
Nucleoside-Diphosphate-Sugar Epimerase From Pseudomonas
Aeruginosa
Length = 342
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 88/214 (41%), Gaps = 29/214 (13%)
Query: 65 ANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKR 124
A +L+ + A+ G DGV +A Q ++ + +G N + + R
Sbjct: 63 AEMLDHAGLERALRGLDGVIFSAGYYPSRPRRWQEEVA--SALGQTNPFYAACLQARVPR 120
Query: 125 VVLTSSIGAMLLNETPMTPDVVID-ETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKEN 183
++ S AM P P + E F + + K Y L K +E A + A+ N
Sbjct: 121 ILYVGSAYAM-----PRHPQGLPGHEGLFYDSL--PSGKSSYVLCKWALDEQAREQAR-N 172
Query: 184 GIDLVAIHPGTVIGPFFQPILNFG---AEVILNLINGDQSFAFPYIFVEIRDVVYAH--- 237
G+ +V PG V+G L+ G VI + NG+ + + R+V+ A
Sbjct: 173 GLPVVIGIPGMVLGE-----LDIGPTTGRVITAIGNGEMT----HYVAGQRNVIDAAEAG 223
Query: 238 ---IRALEVPKASGRYLLAGSVAQHSDILKFLRE 268
+ ALE + RYLL G + +D+ + + E
Sbjct: 224 RGLLMALERGRIGERYLLTGHNLEMADLTRRIAE 257
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 13/117 (11%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL----DGATERLHLFK 64
KV +TG +G S+L + LL++GY V R +S TE + + + HL
Sbjct: 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERVDHIYQDPHTCNPKFHLHY 61
Query: 65 ANLLEEGSFDSAVDGC--DGVFHTAS----PVIFLSDNPQADIVDPAVMGTLNVLRS 115
+L + + + D V++ + V F S AD+ MGTL +L +
Sbjct: 62 GDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFESPEYTADV---DAMGTLRLLEA 115
>pdb|2PZJ|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+
pdb|2Q1S|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nadh
pdb|2Q1T|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
pdb|2Q1U|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
Wbmf In Complex With Nad+ And Udp
Length = 377
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 78/193 (40%), Gaps = 18/193 (9%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
V V G +GFV S LVK LL+ G V N E + D R + ++ ++
Sbjct: 35 VMVVGGAGFVGSNLVKRLLELGVNQVHVV--DNLLSAEKINVPDHPAVRFS--ETSITDD 90
Query: 71 GSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAV---MGTLNVLRSCAKVHSIKRV-- 125
S D D VFH A+ Q+ I DP TL L+ ++ KR+
Sbjct: 91 ALLASLQDEYDYVFHLAT-----YHGNQSSIHDPLADHENNTLTTLKLYERLKHFKRLKK 145
Query: 126 VLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGI 185
V+ S+ G + +T +ET + V N YS++K E + + K++ +
Sbjct: 146 VVYSAAGCSIAEKT-FDDAKATEET---DIVSLHNNDSPYSMSKIFGEFYSVYYHKQHQL 201
Query: 186 DLVAIHPGTVIGP 198
V V GP
Sbjct: 202 PTVRARFQNVYGP 214
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL 53
+ VTG +G ++L KLLL++GY V V +S LREL
Sbjct: 15 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLREL 59
>pdb|1XA0|A Chain A, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
pdb|1XA0|B Chain B, Crystal Structure Of Mcsg Target Apc35536 From Bacillus
Stearothermophilus
Length = 328
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERL 60
E V VTGA+G V S V L +RGYTV+A+ + + ++LR L GA E L
Sbjct: 149 ERGPVLVTGATGGVGSLAVSXLAKRGYTVEAST--GKAAEHDYLRVL-GAKEVL 199
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDP---NSPKTEHL 50
V +TG +G S+L + LL++GY V VR N+ + EHL
Sbjct: 26 VALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHL 69
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 82/201 (40%), Gaps = 28/201 (13%)
Query: 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFK 64
E + K + +TG +GFV S L L G+ V TV D + E E L
Sbjct: 24 EKDRKRILITGGAGFVGSHLTDKLXXDGHEV--TVVDNFFTGRKRNVEHWIGHENFELIN 81
Query: 65 ANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDP------AVMGTLNVLRSCAK 118
+++E + D ++H ASP +P +P +GTLN L +
Sbjct: 82 HDVVEPLYIE-----VDQIYHLASPA-----SPPNYXYNPIKTLKTNTIGTLNXLGLAKR 131
Query: 119 VHSIKRVVLTSSIGAMLLNETPMTPDVVIDETW-FSNPVLCKENKEWYSLAKTLAEEAAW 177
V + R++L S+ + + + + P ++ W NP+ + Y K +AE +
Sbjct: 132 VGA--RLLLAST--SEVYGDPEVHPQS--EDYWGHVNPIGP---RACYDEGKRVAETXCY 182
Query: 178 KFAKENGIDLVAIHPGTVIGP 198
+ K+ G+++ GP
Sbjct: 183 AYXKQEGVEVRVARIFNTFGP 203
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLH 61
MSG K +TG G ++L KLLL++GY V R + L+EL G +
Sbjct: 1 MSG----KRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKEL-GIENDVK 55
Query: 62 LFKANLLE 69
+ +LLE
Sbjct: 56 IIHMDLLE 63
>pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose
MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces
Cerevisiae Complexed With Nad, Udp-Glucose, And
Galactose
Length = 699
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 44/215 (20%), Positives = 85/215 (39%), Gaps = 31/215 (14%)
Query: 1 MMSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERL 60
+ E K+V VTG +G++ S V L++ GY NS R +
Sbjct: 4 QLQSESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYDSVARLEVLTKHHI 63
Query: 61 HLFKANLLEEGSFDSAVD--GCDGVFHTAS----------PVIFLSDNPQADIVDPAVMG 108
++ +L + + D V H A P+ + +N ++G
Sbjct: 64 PFYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYYHNN---------ILG 114
Query: 109 TLNVLRSCAKVHSIKRVVLTSSIGAMLLNETPMTPDVV-IDETWFSNPVLCKENKEWYSL 167
T+ VL + +++ + V +SS A + + P+++ I E P + + Y++
Sbjct: 115 TV-VLLELMQQYNVSKFVFSSS--ATVYGDATRFPNMIPIPEECPLGPTNPYGHTK-YAI 170
Query: 168 AKTL-----AEEAAWKFAKENGIDLVAIHPGTVIG 197
L +++ +WKFA + + HP +IG
Sbjct: 171 ENILNDLYNSDKKSWKFAILRYFNPIGAHPSGLIG 205
>pdb|4F6L|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6L|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 508
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 86/199 (43%), Gaps = 23/199 (11%)
Query: 13 VTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEH--LRELDG--ATERLHLFKANL- 67
+TGA+GF+ ++L++ L + + +R N + + L+ + E + + +N+
Sbjct: 155 LTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAWYKLMTNLNDYFSEETVEMMLSNIE 214
Query: 68 LEEGSFDSAVD-----GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSI 122
+ G F+ D D + H + D+ + + V+ V GT++V+R + H+
Sbjct: 215 VIVGDFECMDDVVLPENMDTIIHAGARTDHFGDDDEFEKVN--VQGTVDVIRLAQQHHAR 272
Query: 123 KRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKEN--KEWYSLAKTLAEEAAWKFA 180
V T S+G D+ ++ FS + K Y+ +K +E + A
Sbjct: 273 LIYVSTISVGTYF--------DIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKVLE-A 323
Query: 181 KENGIDLVAIHPGTVIGPF 199
NG+D + G + P+
Sbjct: 324 VNNGLDGRIVRVGNLTSPY 342
>pdb|4AKY|A Chain A, Crystal Structure Of Virb8 From Brucella Suis In Complex
With Interaction Inhibitor 2-(Butylamino)-8-Quinolinol
pdb|4AKY|B Chain B, Crystal Structure Of Virb8 From Brucella Suis In Complex
With Interaction Inhibitor 2-(Butylamino)-8-Quinolinol
pdb|4AKY|C Chain C, Crystal Structure Of Virb8 From Brucella Suis In Complex
With Interaction Inhibitor 2-(Butylamino)-8-Quinolinol
pdb|4AKY|D Chain D, Crystal Structure Of Virb8 From Brucella Suis In Complex
With Interaction Inhibitor 2-(Butylamino)-8-Quinolinol
pdb|4AKY|E Chain E, Crystal Structure Of Virb8 From Brucella Suis In Complex
With Interaction Inhibitor 2-(Butylamino)-8-Quinolinol
pdb|4AKZ|A Chain A, Crystal Structure Of Virb8 From Brucella Suis
pdb|4AKZ|B Chain B, Crystal Structure Of Virb8 From Brucella Suis
pdb|4AKZ|C Chain C, Crystal Structure Of Virb8 From Brucella Suis
pdb|4AKZ|D Chain D, Crystal Structure Of Virb8 From Brucella Suis
pdb|4AKZ|E Chain E, Crystal Structure Of Virb8 From Brucella Suis
Length = 138
Score = 32.0 bits (71), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 144 DVVIDETWFSNPVLCKENKEWYSLAK 169
D V+D+ W S V+ +E +WY+L K
Sbjct: 3 DTVMDKYWLSQYVIARETYDWYTLQK 28
>pdb|2EHD|A Chain A, Crystal Structure Analysis Of Oxidoreductase
pdb|2EHD|B Chain B, Crystal Structure Analysis Of Oxidoreductase
Length = 234
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
Query: 5 EGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFK 64
EG + V +TGAS + +LL +GY V RD + L+ L E
Sbjct: 2 EGMKGAVLITGASRGIGEATARLLHAKGYRVGLMARD-----EKRLQALAAELEGALPLP 56
Query: 65 ANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDP 104
++ EEG + AV + F S ++ +N ++ P
Sbjct: 57 GDVREEGDWARAVAAMEEAFGELSALV---NNAGVGVMKP 93
>pdb|3UN1|A Chain A, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3UN1|B Chain B, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3UN1|C Chain C, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
pdb|3UN1|D Chain D, Crystal Structure Of An Oxidoreductase From
Sinorhizobium Meliloti 1021
Length = 260
Score = 31.6 bits (70), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKATVR 40
++KVV +TGAS + + LV+ R Y V AT R
Sbjct: 27 QQKVVVITGASQGIGAGLVRAYRDRNYRVVATSR 60
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 24 LVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKA 65
+VKLLL +G V A +D N+P EHL + +G E + L A
Sbjct: 57 IVKLLLAKGADVNARSKDGNTP--EHLAKKNGHHEIVKLLDA 96
>pdb|3EHE|A Chain A, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
pdb|3EHE|B Chain B, Crystal Structure Of Udp-Glucose 4 Epimerase (Gale-1) From
Archaeoglobus Fulgidus
Length = 313
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 95/227 (41%), Gaps = 32/227 (14%)
Query: 10 VVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLE 69
++ VTG +GF+ S +V L + V V D S E E L KA+L
Sbjct: 3 LIVVTGGAGFIGSHVVDKLSESNEIV---VIDNLSSGNEEF-----VNEAARLVKADLAA 54
Query: 70 EGSFDSAVDGCDGVFHTAS--PVIFLSDNPQADIVDPAVMGTLNVLRSCAKVHSIKRVVL 127
+ D + G + V+H A+ V ++NP +I V+ T +L + K + R+V
Sbjct: 55 DDIKDY-LKGAEEVWHIAANPDVRIGAENPD-EIYRNNVLATYRLLEAMRKA-GVSRIVF 111
Query: 128 TSSIGAMLLNETPMTPDVVIDETWFSNPV--------LCKENKEWYSLAKTLAEEAAWKF 179
TS+ + + E + P E + ++P+ C+ E Y + AW +
Sbjct: 112 TST--STVYGEAKVIP---TPEDYPTHPISLYGASKLACEALIESYCHTFDM---QAWIY 163
Query: 180 AKENGIDLVAIHPGTVIGPFFQPILNFGAEVILNLINGDQSFAFPYI 226
N I + H VI F L E + L NG+Q+ ++ YI
Sbjct: 164 RFANVIGRRSTH--GVIYDFIMK-LKRNPEELEILGNGEQNKSYIYI 207
>pdb|1HDO|A Chain A, Human Biliverdin Ix Beta Reductase: Nadp Complex
pdb|1HE2|A Chain A, Human Biliverdin Ix Beta Reductase: NadpBILIVERDIN IX
Alpha Ternary Complex
pdb|1HE3|A Chain A, Human Biliverdin Ix Beta Reductase: NadpMESOBILIVERDIN IV
Alpha Ternary Complex
pdb|1HE4|A Chain A, Human Biliverdin Ix Beta Reductase: NadpFMN TERNARY
COMPLEX
pdb|1HE5|A Chain A, Human Biliverdin Ix Beta Reductase: NadpLUMICHROME TERNARY
Complex
Length = 206
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 52/124 (41%), Gaps = 18/124 (14%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLL 68
K + + GA+G + +Q GY V VRD + +E R H+ ++L
Sbjct: 4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRP-------AHVVVGDVL 56
Query: 69 EEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDPAVM--GTLNVLRSCAKVHSIKRVV 126
+ D V G D V V+ + N D+ VM G N++ + K H + +VV
Sbjct: 57 QAADVDKTVAGQDAVI-----VLLGTRN---DLSPTTVMSEGARNIV-AAMKAHGVDKVV 107
Query: 127 LTSS 130
+S
Sbjct: 108 ACTS 111
>pdb|4F6C|A Chain A, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
pdb|4F6C|B Chain B, Crystal Structure Of Aureusimine Biosynthetic Cluster
Reductase Domain
Length = 427
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 43/203 (21%), Positives = 80/203 (39%), Gaps = 31/203 (15%)
Query: 13 VTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE-- 70
+TGA+GF+ ++L++ L + + +R N E + T F +E
Sbjct: 74 LTGATGFLGAYLIEALQGYSHRIYCFIRADN----EEIAWYKLXTNLNDYFSEETVEXXL 129
Query: 71 -------GSFDSAVD-----GCDGVFHTASPVIFLSDNPQADIVDPAVMGTLNVLRSCAK 118
G F+ D D + H + D+ + + V+ V GT++V+R +
Sbjct: 130 SNIEVIVGDFECXDDVVLPENXDTIIHAGARTDHFGDDDEFEKVN--VQGTVDVIRLAQQ 187
Query: 119 VHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKEN--KEWYSLAKTLAEEAA 176
H+ V T S+G D+ ++ FS + K Y+ +K +E
Sbjct: 188 HHARLIYVSTISVGTYF--------DIDTEDVTFSEADVYKGQLLTSPYTRSKFYSELKV 239
Query: 177 WKFAKENGIDLVAIHPGTVIGPF 199
+ A NG+D + G + P+
Sbjct: 240 LE-AVNNGLDGRIVRVGNLTSPY 261
>pdb|3SXP|A Chain A, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|B Chain B, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|C Chain C, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|D Chain D, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
pdb|3SXP|E Chain E, Crystal Structure Of Helicobacter Pylori
Adp-L-Glycero-D-Manno- Heptose-6-Epimerase (Rfad,
Hp0859)
Length = 362
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 227 FVEIRDVVYAHIRALEVPKASGRYLLAGSVAQ-HSDILKFLREH 269
FV I DV+ A+++A++ K SG Y + S A+ +++I+ L+EH
Sbjct: 229 FVYIEDVIQANVKAMKAQK-SGVYNVGYSQARSYNEIVSILKEH 271
>pdb|3H2S|A Chain A, Crystal Structure Of The Q03b84 Protein From
Lactobacillus Casei. Northeast Structural Genomics
Consortium Target Lcr19.
pdb|3H2S|B Chain B, Crystal Structure Of The Q03b84 Protein From
Lactobacillus Casei. Northeast Structural Genomics
Consortium Target Lcr19
Length = 224
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 11 VCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANLLEE 70
+ V GA+G S +V +RG+ V A VRDP A +RL A L++E
Sbjct: 3 IAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQK-----------AADRLGATVATLVKE 51
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 29/164 (17%)
Query: 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFG 207
D +WF +P +L LA +AA V G+ + FQ I N G
Sbjct: 796 DVSWFDDP-----KNTTGALTTRLANDAAQ----------VKGATGSRLAVIFQNIANLG 840
Query: 208 AEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPKASGRYL-----LAGSVAQHSDI 262
+I++LI G Q + + I ++ A +E+ SG+ L L GS ++
Sbjct: 841 TGIIISLIYGWQ---LTLLLLAIVPII-AIAGVVEMKMLSGQALKDKKELEGSGKIATEA 896
Query: 263 LKFLREHYPTLLRSGKLEEKYQPTIKV----SQERAKSLGINFT 302
++ R +L R K E Y ++++ + ++A GI F+
Sbjct: 897 IENFRT-VVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFS 939
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 29/164 (17%)
Query: 148 DETWFSNPVLCKENKEWYSLAKTLAEEAAWKFAKENGIDLVAIHPGTVIGPFFQPILNFG 207
D +WF +P +L LA +AA V G+ + FQ I N G
Sbjct: 796 DVSWFDDP-----KNTTGALTTRLANDAAQ----------VKGATGSRLAVIFQNIANLG 840
Query: 208 AEVILNLINGDQSFAFPYIFVEIRDVVYAHIRALEVPKASGRYL-----LAGSVAQHSDI 262
+I++LI G Q + + I ++ A +E+ SG+ L L GS ++
Sbjct: 841 TGIIISLIYGWQ---LTLLLLAIVPII-AIAGVVEMKMLSGQALKDKKELEGSGKIATEA 896
Query: 263 LKFLREHYPTLLRSGKLEEKYQPTIKV----SQERAKSLGINFT 302
++ R +L R K E Y ++++ + ++A GI F+
Sbjct: 897 IENFRT-VVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFS 939
>pdb|3RD5|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
From Mycobacterium Paratuberculosis
Length = 291
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 8 EKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDGATERLHLFKANL 67
++ V +TGA+ + + + L +RG TV VRD + R + G E L +L
Sbjct: 16 QRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAA-RTMAGQVEVRELDLQDL 74
Query: 68 LEEGSFDSAVDGCDGVFHTA 87
F V G D + + A
Sbjct: 75 SSVRRFADGVSGADVLINNA 94
>pdb|3QX3|A Chain A, Human Topoisomerase Iibeta In Complex With Dna And
Etoposide
pdb|3QX3|B Chain B, Human Topoisomerase Iibeta In Complex With Dna And
Etoposide
Length = 803
Score = 28.5 bits (62), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 262 ILKFLREHYPTLLRSGKLEEKYQPTIKVSQER 293
++ F+ ++P+LL+ G LEE P +K S+ +
Sbjct: 151 LINFIHHNWPSLLKHGFLEEFITPIVKASKNK 182
>pdb|2R2G|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
pdb|2R2G|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Complexed With Emdf
Length = 318
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL 53
M G + + + G +G++ + +VK L+ G+ R PNS KT L E
Sbjct: 5 MEENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTR-PNSSKTTLLDEF 55
>pdb|3C3X|A Chain A, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
pdb|3C3X|B Chain B, The Multiple Phenylpropene Synthases In Both Clarkia
Breweri And Petunia Hybrida Represent Two Distinct
Lineages
Length = 318
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL 53
M G + + + G +G++ + +VK L+ G+ R PNS KT L E
Sbjct: 5 MEENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTR-PNSSKTTLLDEF 55
>pdb|2QX7|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QX7|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QYS|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QZZ|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2R6J|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 318
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL 53
M G + + + G +G++ + +VK L+ G+ R PNS KT L E
Sbjct: 5 MEENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTR-PNSSKTTLLDEF 55
>pdb|2QW8|A Chain A, Structure Of Eugenol Synthase From Ocimum Basilicum
pdb|2QW8|B Chain B, Structure Of Eugenol Synthase From Ocimum Basilicum
Length = 314
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 2 MSGEGEEKVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLREL 53
M G + + + G +G++ + +VK L+ G+ R PNS KT L E
Sbjct: 1 MEENGMKSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTR-PNSSKTTLLDEF 51
>pdb|4FM9|A Chain A, Human Topoisomerase Ii Alpha Bound To Dna
Length = 763
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 262 ILKFLREHYPTLLRSGKLEEKYQPTIKVSQERAK 295
++ F+ ++P+LLR LEE P +KVS+ + +
Sbjct: 123 LINFIHHNWPSLLRHRFLEEFITPIVKVSKNKQE 156
>pdb|2X6T|A Chain A, Agme Bound To Adp-B-Mannose
pdb|2X6T|B Chain B, Agme Bound To Adp-B-Mannose
pdb|2X6T|C Chain C, Agme Bound To Adp-B-Mannose
pdb|2X6T|D Chain D, Agme Bound To Adp-B-Mannose
pdb|2X6T|E Chain E, Agme Bound To Adp-B-Mannose
pdb|2X6T|F Chain F, Agme Bound To Adp-B-Mannose
pdb|2X6T|G Chain G, Agme Bound To Adp-B-Mannose
pdb|2X6T|H Chain H, Agme Bound To Adp-B-Mannose
pdb|2X6T|I Chain I, Agme Bound To Adp-B-Mannose
pdb|2X6T|J Chain J, Agme Bound To Adp-B-Mannose
pdb|2X86|A Chain A, Agme Bound To Adp-b-mannose
pdb|2X86|B Chain B, Agme Bound To Adp-b-mannose
pdb|2X86|C Chain C, Agme Bound To Adp-b-mannose
pdb|2X86|D Chain D, Agme Bound To Adp-b-mannose
pdb|2X86|E Chain E, Agme Bound To Adp-b-mannose
pdb|2X86|F Chain F, Agme Bound To Adp-b-mannose
pdb|2X86|G Chain G, Agme Bound To Adp-b-mannose
pdb|2X86|H Chain H, Agme Bound To Adp-b-mannose
pdb|2X86|I Chain I, Agme Bound To Adp-b-mannose
pdb|2X86|J Chain J, Agme Bound To Adp-b-mannose
pdb|2X86|K Chain K, Agme Bound To Adp-b-mannose
pdb|2X86|L Chain L, Agme Bound To Adp-b-mannose
pdb|2X86|M Chain M, Agme Bound To Adp-b-mannose
pdb|2X86|N Chain N, Agme Bound To Adp-b-mannose
pdb|2X86|O Chain O, Agme Bound To Adp-b-mannose
pdb|2X86|P Chain P, Agme Bound To Adp-b-mannose
pdb|2X86|Q Chain Q, Agme Bound To Adp-b-mannose
pdb|2X86|R Chain R, Agme Bound To Adp-b-mannose
pdb|2X86|S Chain S, Agme Bound To Adp-b-mannose
pdb|2X86|T Chain T, Agme Bound To Adp-b-mannose
Length = 357
Score = 27.7 bits (60), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYT 34
+++ VTG +GF+ S +VK L +G T
Sbjct: 47 RMIIVTGGAGFIGSNIVKALNDKGIT 72
>pdb|3NX4|A Chain A, Crystal Structure Of The Yhdh Oxidoreductase From
Salmonella Enterica In Complex With Nadp
pdb|3NX4|B Chain B, Crystal Structure Of The Yhdh Oxidoreductase From
Salmonella Enterica In Complex With Nadp
Length = 324
Score = 27.7 bits (60), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 7 EEKVVCVTGASGFVASWLVKLLLQRGYTVKA 37
++ V VTGASG V S V LL + GY V A
Sbjct: 146 QDGEVVVTGASGGVGSTAVALLHKLGYQVAA 176
>pdb|3LU1|A Chain A, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|B Chain B, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|C Chain C, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
pdb|3LU1|D Chain D, Crystal Structure Analysis Of Wbgu: A Udp-Galnac
4-Epimerase
Length = 364
Score = 27.7 bits (60), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 86/210 (40%), Gaps = 39/210 (18%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-----ATE---RL 60
K +TG +GF+ S L++ LL+ V ++ T H LD +TE R
Sbjct: 39 KTWLITGVAGFIGSNLLEKLLKLNQVVIGL----DNFSTGHQYNLDEVKTLVSTEQWSRF 94
Query: 61 HLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDP------AVMGTLNVLR 114
+ ++ + + + + G D V H A+ L P++ IVDP + G LN+L
Sbjct: 95 CFIEGDIRDLTTCEQVMKGVDHVLHQAA----LGSVPRS-IVDPITTNATNITGFLNILH 149
Query: 115 SC--AKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLA 172
+ A+V S +S+ G + P P V E NP+ Y++ K +
Sbjct: 150 AAKNAQVQSFTYAASSSTYG-----DHPALPKV---EENIGNPL------SPYAVTKYVN 195
Query: 173 EEAAWKFAKENGIDLVAIHPGTVIGPFFQP 202
E A +A+ G + + V G P
Sbjct: 196 EIYAQVYARTYGFKTIGLRYFNVFGRRQDP 225
>pdb|3RU9|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU9|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUA|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUD|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUD|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUE|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|S Chain S, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUF|BB Chain b, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|A Chain A, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|B Chain B, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|C Chain C, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
pdb|3RUH|D Chain D, Alternative Analogs As Viable Substrates Of Udp-Hexose
4-Epimerases
Length = 351
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 86/210 (40%), Gaps = 39/210 (18%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-----ATE---RL 60
K +TG +GF+ S L++ LL+ V ++ T H LD +TE R
Sbjct: 26 KTWLITGVAGFIGSNLLEKLLKLNQVVIGL----DNFSTGHQYNLDEVKTLVSTEQWSRF 81
Query: 61 HLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDP------AVMGTLNVLR 114
+ ++ + + + + G D V H A+ L P++ IVDP + G LN+L
Sbjct: 82 CFIEGDIRDLTTCEQVMKGVDHVLHQAA----LGSVPRS-IVDPITTNATNITGFLNILH 136
Query: 115 SC--AKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLA 172
+ A+V S +S+ G + P P V E NP+ Y++ K +
Sbjct: 137 AAKNAQVQSFTYAASSSTYG-----DHPALPKV---EENIGNPL------SPYAVTKYVN 182
Query: 173 EEAAWKFAKENGIDLVAIHPGTVIGPFFQP 202
E A +A+ G + + V G P
Sbjct: 183 EIYAQVYARTYGFKTIGLRYFNVFGRRQDP 212
>pdb|3RU7|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RU7|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 86/210 (40%), Gaps = 39/210 (18%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-----ATE---RL 60
K +TG +GF+ S L++ LL+ V ++ T H LD +TE R
Sbjct: 20 KTWLITGVAGFIGSNLLEKLLKLNQVVIGL----DNFSTGHQYNLDEVKTLVSTEQWSRF 75
Query: 61 HLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDP------AVMGTLNVLR 114
+ ++ + + + + G D V H A+ L P++ IVDP + G LN+L
Sbjct: 76 CFIEGDIRDLTTCEQVMKGVDHVLHQAA----LGSVPRS-IVDPITTNATNITGFLNILH 130
Query: 115 SC--AKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLA 172
+ A+V S +S+ G + P P V E NP+ Y++ K +
Sbjct: 131 AAKNAQVQSFTYAASSSTYG-----DHPALPKV---EENIGNPL------SPYAVTKYVN 176
Query: 173 EEAAWKFAKENGIDLVAIHPGTVIGPFFQP 202
E A +A+ G + + V G P
Sbjct: 177 EIYAQVYARTYGFKTIGLRYFNVFGRRQDP 206
>pdb|3RUC|A Chain A, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|B Chain B, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|C Chain C, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
pdb|3RUC|D Chain D, Specific Recognition Of N-Acetylated Substrates And Domain
Flexibility In Wbgu: A Udp-Galnac 4-Epimerase
Length = 351
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 86/210 (40%), Gaps = 39/210 (18%)
Query: 9 KVVCVTGASGFVASWLVKLLLQRGYTVKATVRDPNSPKTEHLRELDG-----ATE---RL 60
K +TG +GF+ S L++ LL+ V ++ T H LD +TE R
Sbjct: 26 KTWLITGVAGFIGSNLLEKLLKLNQVVIGL----DNFSTGHQYNLDEVKTLVSTEQWSRF 81
Query: 61 HLFKANLLEEGSFDSAVDGCDGVFHTASPVIFLSDNPQADIVDP------AVMGTLNVLR 114
+ ++ + + + + G D V H A+ L P++ IVDP + G LN+L
Sbjct: 82 CFIEGDIRDLTTCEQVMKGVDHVLHQAA----LGSVPRS-IVDPITTNATNITGFLNILH 136
Query: 115 SC--AKVHSIKRVVLTSSIGAMLLNETPMTPDVVIDETWFSNPVLCKENKEWYSLAKTLA 172
+ A+V S +S+ G + P P V E NP+ Y++ K +
Sbjct: 137 AAKNAQVQSFTYAASSSTYG-----DHPALPKV---EENIGNPL------SPYAVTKYVN 182
Query: 173 EEAAWKFAKENGIDLVAIHPGTVIGPFFQP 202
E A +A+ G + + V G P
Sbjct: 183 EIYAQVYARTYGFKTIGLRYFNVFGRRQDP 212
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,909,126
Number of Sequences: 62578
Number of extensions: 411286
Number of successful extensions: 1191
Number of sequences better than 100.0: 83
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 1134
Number of HSP's gapped (non-prelim): 87
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)