Query 020748
Match_columns 322
No_of_seqs 146 out of 1588
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 07:36:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020748.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020748hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 2.1E-57 7.1E-62 396.0 19.6 276 27-320 3-288 (303)
2 1okc_A ADP, ATP carrier protei 100.0 1.3E-56 4.3E-61 390.2 23.0 280 23-318 5-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 8.1E-36 2.8E-40 259.1 19.6 190 124-320 5-203 (297)
4 2lck_A Mitochondrial uncouplin 100.0 5.1E-35 1.8E-39 254.6 15.9 180 129-320 4-194 (303)
5 3tgu_G UQCRQ, mitochondrial ub 39.8 27 0.00091 22.9 3.1 34 285-318 33-66 (81)
6 1pp9_G Ubiquinol-cytochrome C 28.5 52 0.0018 21.5 3.1 35 284-318 32-66 (81)
7 2acm_A Mucin-1; auto-catalytic 24.9 23 0.0008 21.4 0.8 21 63-83 40-60 (66)
8 3f2e_A SIRV coat protein; four 24.1 41 0.0014 21.5 1.8 33 269-301 7-43 (100)
9 3cx5_H Cytochrome B-C1 complex 22.3 68 0.0023 21.6 2.8 36 283-318 41-76 (93)
10 3vjj_A P9-1; 3.00A {Rice black 17.0 68 0.0023 26.3 2.2 37 245-286 272-308 (368)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.1e-57 Score=395.96 Aligned_cols=276 Identities=21% Similarity=0.339 Sum_probs=246.9
Q ss_pred hhHHhhhHHhHhhhhccchhhhHHHHhhccCCC---------CCCCcHHHHHHHHHhhcCccccccchhhhhhccchhHH
Q 020748 27 KFYIVGAGLFTGVTVALYPVSVVKTRLQVATKD---------TAERNAFSVIRGILRTDGIPGLYRGFGTVITGAIPARI 97 (322)
Q Consensus 27 ~~~~~g~~a~~~~~~~~~Pld~vk~~~q~~~~~---------~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~ 97 (322)
..+++|++|++++.+++||+|++|+|+|++... ..|++.++++++++++||+++||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 468999999999999999999999999998652 36889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHhHHHHHHHHhhhhhhchHHHHHHHHHhcCCC-CCCCcCcHHHHHHHHH
Q 020748 98 LFLTALETTKAAAFKIVEPFKLSEPAQAAIANGIAGMTASMCAQAVFVPIDVVSQKLMVQGYS-GHAKYSGGLDVARKVI 176 (322)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~-~~~~~~~~~~~~~~i~ 176 (322)
++|.+|+.+++.+.+... + .+....+++|++|++++.++++|+|+||+|+|++... ...+|.+.++++++++
T Consensus 83 i~f~~ye~~k~~~~~~~~--~-----~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~ 155 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSE--H-----AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIA 155 (303)
T ss_dssp HTTTHHHHHHHHHSCCCS--S-----CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCc--C-----CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHH
Confidence 999999999998765311 1 2345678899999999999999999999999998642 3457899999999999
Q ss_pred HhhcccccccccchhhhcchhhhhHHHHHhHHHHHHHHHhhCCCCCCCCCCCChhHHHHHHHHHHHHHhhhHhhhcchHH
Q 020748 177 QSDGLRGLYRGFGLSVMTYSPSSAVWWASYGSSQRVIWRFLGHGTGIDDAVPSQSKIVLVQATGGLIAGATASCITTPLD 256 (322)
Q Consensus 177 ~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~d 256 (322)
++||+++||||+.+.+++.+++.+++|.+||.+|+.+.+.. .........+++|++||++++++++|+|
T Consensus 156 ~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~-----------~~~~~~~~~~~~g~~ag~~~~~~~~P~d 224 (303)
T 2lck_A 156 REEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN-----------LMTDDLPCHFTSAFGAGFCTTVIASPVD 224 (303)
T ss_dssp HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT-----------SCCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------CCCCchHHHHHHHHHHHHHHHHHcCHHH
Confidence 99999999999999999999999999999999998774321 0112245678999999999999999999
Q ss_pred HHHHHhhccCCCCCCCHHHHHHHHHHhhchhhhccchhhHHHHhhhhhhHHHHHHHHHHhhhcc
Q 020748 257 TIKTRLQVMGHDRRPSATQVVKKLISEDGWKGLYRGLGPRFFSMSAWGTSMILAYEYLKRLCAK 320 (322)
Q Consensus 257 vvktr~q~~~~~~~~~~~~~~~~i~~~~G~~~~yrG~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 320 (322)
|||+|||.+....|.++++|+++++++||++|||||+.++++|.+|.++++|.+||.+++.+.+
T Consensus 225 vvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 225 VVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp HHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHhccccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999988777999999999999999999999999999999999999999999999988754
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.3e-56 Score=390.21 Aligned_cols=280 Identities=19% Similarity=0.279 Sum_probs=240.1
Q ss_pred CCcchhHHhhhHHhHhhhhccchhhhHHHHhhccCC------CCCCCcHHHHHHHHHhhcCccccccchhhhhhccchhH
Q 020748 23 LDKTKFYIVGAGLFTGVTVALYPVSVVKTRLQVATK------DTAERNAFSVIRGILRTDGIPGLYRGFGTVITGAIPAR 96 (322)
Q Consensus 23 ~~~~~~~~~g~~a~~~~~~~~~Pld~vk~~~q~~~~------~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~ 96 (322)
++....+++|++|++++.+++||+|++|+|+|++.. ...|++.++++++++++||++|||||+.+++++.++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 345678999999999999999999999999999864 23578999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCCCchHHHHHHHhHHHHHHHHhhhhhhchHHHHHHHHHhcCCC--CCCCcCcHHHHHHH
Q 020748 97 ILFLTALETTKAAAFKIVEPFKLSEPAQAAIANGIAGMTASMCAQAVFVPIDVVSQKLMVQGYS--GHAKYSGGLDVARK 174 (322)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~--~~~~~~~~~~~~~~ 174 (322)
+++|.+|+.+++.+...... ...........+++|++|++++.++++|+|+||+|+|++... ...+|.++++++++
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~--~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~ 162 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDR--HKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITK 162 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCT--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCc--ccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHH
Confidence 99999999999865432211 122234556788999999999999999999999999998642 24578999999999
Q ss_pred HHHhhcccccccccchhhhcchhhhhHHHHHhHHHHHHHHHhhCCCCCCCCCCCChhHHHHHHHHHHHHHhhhHhhhcch
Q 020748 175 VIQSDGLRGLYRGFGLSVMTYSPSSAVWWASYGSSQRVIWRFLGHGTGIDDAVPSQSKIVLVQATGGLIAGATASCITTP 254 (322)
Q Consensus 175 i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P 254 (322)
++++||+++||||+.+.+++.+++.+++|.+||.+++.+.+. ........+++|++||.+++++++|
T Consensus 163 i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~-------------~~~~~~~~~~~g~~ag~~a~~~t~P 229 (297)
T 1okc_A 163 IFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP-------------KNVHIIVSWMIAQTVTAVAGLVSYP 229 (297)
T ss_dssp HHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG-------------GCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC-------------CCccHHHHHHHHHHHHHHHHHhcCh
Confidence 999999999999999999999999999999999999865321 0112456789999999999999999
Q ss_pred HHHHHHHhhccCCC-----CCCCHHHHHHHHHHhhchhhhccchhhHHHHhhhhhhHHHHHHHHHHhhh
Q 020748 255 LDTIKTRLQVMGHD-----RRPSATQVVKKLISEDGWKGLYRGLGPRFFSMSAWGTSMILAYEYLKRLC 318 (322)
Q Consensus 255 ~dvvktr~q~~~~~-----~~~~~~~~~~~i~~~~G~~~~yrG~~~~~~~~~~~~~~~~~~~e~~~~~~ 318 (322)
+||||+|||.+... .|.++++|+++++++||++|||||+.++++|. +.++++|.+||.+++.+
T Consensus 230 ~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 230 FDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred HHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 99999999997542 48899999999999999999999999999996 56789999999998754
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=8.1e-36 Score=259.07 Aligned_cols=190 Identities=23% Similarity=0.330 Sum_probs=166.0
Q ss_pred HHHHHHhHHHHHHHHhhhhhhchHHHHHHHHHhcCCC----CCCCcCcHHHHHHHHHHhhcccccccccchhhhcchhhh
Q 020748 124 QAAIANGIAGMTASMCAQAVFVPIDVVSQKLMVQGYS----GHAKYSGGLDVARKVIQSDGLRGLYRGFGLSVMTYSPSS 199 (322)
Q Consensus 124 ~~~~~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~----~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~ 199 (322)
.+.+..+++|.+|++++.++++|+|+||+|+|++... ....|.+.++++++++++||+++||||+.+.+++.++..
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 4567789999999999999999999999999998532 234789999999999999999999999999999999999
Q ss_pred hHHHHHhHHHHHHHHHhhCCCCCCCCCCCChhHHHHHHHHHHHHHhhhHhhhcchHHHHHHHhhccCC-----CCCCCHH
Q 020748 200 AVWWASYGSSQRVIWRFLGHGTGIDDAVPSQSKIVLVQATGGLIAGATASCITTPLDTIKTRLQVMGH-----DRRPSAT 274 (322)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktr~q~~~~-----~~~~~~~ 274 (322)
+++|.+||.+++.+.... +. ...........+++|++||++++++++|+|+||+|+|.+.. ..|.+++
T Consensus 85 ~~~f~~ye~~k~~~~~~~------~~-~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~ 157 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGV------DR-HKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLG 157 (297)
T ss_dssp HHHHHHHHHHHHHHHTTC------CT-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHH
T ss_pred HHHHHHHHHHHHHhcccc------Cc-ccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHH
Confidence 999999999999654321 00 11223345678999999999999999999999999999753 3488999
Q ss_pred HHHHHHHHhhchhhhccchhhHHHHhhhhhhHHHHHHHHHHhhhcc
Q 020748 275 QVVKKLISEDGWKGLYRGLGPRFFSMSAWGTSMILAYEYLKRLCAK 320 (322)
Q Consensus 275 ~~~~~i~~~~G~~~~yrG~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 320 (322)
+++++++++||+++||||+.++++|.+|..++.|.+||.+++.+.+
T Consensus 158 ~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~ 203 (297)
T 1okc_A 158 NCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD 203 (297)
T ss_dssp HHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG
T ss_pred HHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999998754
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=5.1e-35 Score=254.59 Aligned_cols=180 Identities=23% Similarity=0.358 Sum_probs=161.7
Q ss_pred HhHHHHHHHHhhhhhhchHHHHHHHHHhcCCCC-------CCCcCcHHHHHHHHHHhhcccccccccchhhhcchhhhhH
Q 020748 129 NGIAGMTASMCAQAVFVPIDVVSQKLMVQGYSG-------HAKYSGGLDVARKVIQSDGLRGLYRGFGLSVMTYSPSSAV 201 (322)
Q Consensus 129 ~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~~~-------~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~ 201 (322)
.+++|.+|++++.++++|+|+||+|+|++.... ..+|.+.++++++++++||+++||||+.+.+++.++..++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 468899999999999999999999999986421 3578999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHhhCCCCCCCCCCCChhHHHHHHHHHHHHHhhhHhhhcchHHHHHHHhhccCC----CCCCCHHHHH
Q 020748 202 WWASYGSSQRVIWRFLGHGTGIDDAVPSQSKIVLVQATGGLIAGATASCITTPLDTIKTRLQVMGH----DRRPSATQVV 277 (322)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktr~q~~~~----~~~~~~~~~~ 277 (322)
+|.+||.+|+.+.+. .+ .......+++|++||+++.++++|+|+||+|+|.+.. ..|.+.++++
T Consensus 84 ~f~~ye~~k~~~~~~----~~--------~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~ 151 (303)
T 2lck_A 84 RIGLYDSVKQFYTKG----SE--------HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAY 151 (303)
T ss_dssp TTTHHHHHHHHHSCC----CS--------SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcC----Cc--------CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHH
Confidence 999999999987431 00 1235678899999999999999999999999999864 2588999999
Q ss_pred HHHHHhhchhhhccchhhHHHHhhhhhhHHHHHHHHHHhhhcc
Q 020748 278 KKLISEDGWKGLYRGLGPRFFSMSAWGTSMILAYEYLKRLCAK 320 (322)
Q Consensus 278 ~~i~~~~G~~~~yrG~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 320 (322)
++++++||+++||||+.++++|.+|..++.|.+||.+++.+.+
T Consensus 152 ~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~ 194 (303)
T 2lck_A 152 KTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLK 194 (303)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998865
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=39.78 E-value=27 Score=22.88 Aligned_cols=34 Identities=12% Similarity=0.195 Sum_probs=26.3
Q ss_pred chhhhccchhhHHHHhhhhhhHHHHHHHHHHhhh
Q 020748 285 GWKGLYRGLGPRFFSMSAWGTSMILAYEYLKRLC 318 (322)
Q Consensus 285 G~~~~yrG~~~~~~~~~~~~~~~~~~~e~~~~~~ 318 (322)
|+...+|-+.-.++..+|..++.+.+|+...+.-
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~n 66 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEF 66 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHH
Confidence 4445555566678999999999999999987654
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=28.53 E-value=52 Score=21.46 Aligned_cols=35 Identities=11% Similarity=0.131 Sum_probs=28.3
Q ss_pred hchhhhccchhhHHHHhhhhhhHHHHHHHHHHhhh
Q 020748 284 DGWKGLYRGLGPRFFSMSAWGTSMILAYEYLKRLC 318 (322)
Q Consensus 284 ~G~~~~yrG~~~~~~~~~~~~~~~~~~~e~~~~~~ 318 (322)
.|+...+|-+.-..+..+|..++++.+|+...+.-
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~ 66 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEF 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHH
Confidence 45666777777778899999999999999988754
No 7
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=24.87 E-value=23 Score=21.39 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=17.6
Q ss_pred CcHHHHHHHHHhhcCcccccc
Q 020748 63 RNAFSVIRGILRTDGIPGLYR 83 (322)
Q Consensus 63 ~~~~~~~~~i~~~~G~~gly~ 83 (322)
+++...+..|++++++.|++.
T Consensus 40 r~is~L~lqIykq~~FLgl~~ 60 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLSN 60 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEEE
T ss_pred HHHHHHHHHHHccCCeeeeeE
Confidence 367888999999999999863
No 8
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=24.07 E-value=41 Score=21.51 Aligned_cols=33 Identities=18% Similarity=0.414 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHHHHhhch----hhhccchhhHHHHhh
Q 020748 269 RRPSATQVVKKLISEDGW----KGLYRGLGPRFFSMS 301 (322)
Q Consensus 269 ~~~~~~~~~~~i~~~~G~----~~~yrG~~~~~~~~~ 301 (322)
.++++.+-+..++.+.|+ ++.|.||..+..|..
T Consensus 7 kftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 7 KFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp -CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 355666777777788876 568999988777654
No 9
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=22.32 E-value=68 Score=21.56 Aligned_cols=36 Identities=6% Similarity=-0.009 Sum_probs=29.0
Q ss_pred hhchhhhccchhhHHHHhhhhhhHHHHHHHHHHhhh
Q 020748 283 EDGWKGLYRGLGPRFFSMSAWGTSMILAYEYLKRLC 318 (322)
Q Consensus 283 ~~G~~~~yrG~~~~~~~~~~~~~~~~~~~e~~~~~~ 318 (322)
..|+...+|-+.-.++..+|..++.+.+|+...+.-
T Consensus 41 ~~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~ 76 (93)
T 3cx5_H 41 HNAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYN 76 (93)
T ss_dssp TTTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHhcceEEechHhHHHHHHHHHHHHH
Confidence 346667777777788899999999999999887654
No 10
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=16.96 E-value=68 Score=26.29 Aligned_cols=37 Identities=19% Similarity=0.343 Sum_probs=28.8
Q ss_pred hhhHhhhcchHHHHHHHhhccCCCCCCCHHHHHHHHHHhhch
Q 020748 245 GATASCITTPLDTIKTRLQVMGHDRRPSATQVVKKLISEDGW 286 (322)
Q Consensus 245 g~~~~~~~~P~dvvktr~q~~~~~~~~~~~~~~~~i~~~~G~ 286 (322)
=.++++--||||.+|-.++.. -++...+++.+.++|+
T Consensus 272 yqLaTFdnypfdllRfqL~Sl-----istp~~I~e~i~K~GL 308 (368)
T 3vjj_A 272 YQLATFDNYPFDLLRFQLSSL-----ISTPALIREKIAKEGL 308 (368)
T ss_dssp HHHHHCTTCBHHHHHHHCSSC-----CCCCHHHHHHHHHSCS
T ss_pred eeeecCCCCCHHHHHHHhhhh-----ccChHHHHHHHHhcCc
Confidence 356778889999999877663 2556888999999885
Done!