Query 020749
Match_columns 322
No_of_seqs 227 out of 786
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 07:37:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020749.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020749hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cu7_A KIAA1915 protein; nucle 99.7 1.9E-16 6.5E-21 120.2 8.9 57 76-132 6-62 (72)
2 2yus_A SWI/SNF-related matrix- 99.7 8.4E-17 2.9E-21 125.6 6.7 59 65-123 4-62 (79)
3 2yum_A ZZZ3 protein, zinc fing 99.6 3.4E-16 1.2E-20 119.0 7.6 56 77-132 6-67 (75)
4 2elk_A SPCC24B10.08C protein; 99.5 6.6E-15 2.3E-19 108.0 6.3 48 78-125 8-57 (58)
5 1x41_A Transcriptional adaptor 99.5 1.2E-14 4.2E-19 106.9 6.6 49 77-125 6-55 (60)
6 1guu_A C-MYB, MYB proto-oncoge 99.5 7.7E-14 2.6E-18 99.1 6.4 48 78-125 2-50 (52)
7 2iw5_B Protein corest, REST co 99.5 4.5E-14 1.5E-18 130.0 5.9 65 63-127 117-181 (235)
8 2d9a_A B-MYB, MYB-related prot 99.4 1.4E-13 4.9E-18 100.5 5.8 49 77-125 6-55 (60)
9 1gvd_A MYB proto-oncogene prot 99.4 1.4E-13 4.7E-18 98.0 5.1 47 78-124 2-49 (52)
10 2din_A Cell division cycle 5-l 99.4 5.1E-13 1.7E-17 99.4 8.4 55 77-132 7-61 (66)
11 2cqr_A RSGI RUH-043, DNAJ homo 99.4 7.7E-13 2.6E-17 102.2 7.9 48 77-124 16-67 (73)
12 1w0t_A Telomeric repeat bindin 99.4 7.3E-13 2.5E-17 94.9 6.5 47 79-125 2-51 (53)
13 1ity_A TRF1; helix-turn-helix, 99.4 1.2E-12 4.3E-17 98.2 7.5 51 76-126 7-60 (69)
14 2dim_A Cell division cycle 5-l 99.4 8.2E-13 2.8E-17 99.3 5.9 49 77-125 7-56 (70)
15 2ltp_A Nuclear receptor corepr 99.0 1.5E-13 5E-18 108.8 0.0 55 76-130 13-67 (89)
16 3sjm_A Telomeric repeat-bindin 99.3 3.2E-12 1.1E-16 95.9 7.0 47 78-124 10-59 (64)
17 2xag_B REST corepressor 1; ami 99.3 1.8E-12 6.1E-17 129.6 6.0 65 63-127 364-428 (482)
18 2eqr_A N-COR1, N-COR, nuclear 99.2 1.2E-11 4E-16 91.6 6.9 44 77-120 10-53 (61)
19 2cjj_A Radialis; plant develop 99.2 1.5E-11 5E-16 99.1 7.1 62 78-140 7-72 (93)
20 2k9n_A MYB24; R2R3 domain, DNA 99.2 3.3E-11 1.1E-15 96.9 8.1 53 78-130 52-104 (107)
21 2llk_A Cyclin-D-binding MYB-li 99.2 2.2E-11 7.7E-16 94.1 6.5 52 69-121 13-64 (73)
22 1irz_A ARR10-B; helix-turn-hel 99.2 6.7E-11 2.3E-15 90.0 8.1 56 75-130 3-63 (64)
23 3osg_A MYB21; transcription-DN 99.2 2.8E-11 9.5E-16 100.0 6.4 49 76-124 8-56 (126)
24 3osg_A MYB21; transcription-DN 99.2 3.9E-11 1.3E-15 99.1 6.3 51 77-127 60-110 (126)
25 3zqc_A MYB3; transcription-DNA 99.1 2.9E-11 9.9E-16 100.3 5.4 54 77-130 52-105 (131)
26 1gv2_A C-MYB, MYB proto-oncoge 99.1 3.5E-11 1.2E-15 95.7 5.2 49 77-125 54-102 (105)
27 2k9n_A MYB24; R2R3 domain, DNA 99.1 7.3E-11 2.5E-15 94.8 6.0 46 79-124 1-47 (107)
28 1gv2_A C-MYB, MYB proto-oncoge 99.1 5.6E-11 1.9E-15 94.5 5.1 47 78-124 3-50 (105)
29 2cqq_A RSGI RUH-037, DNAJ homo 99.0 4.9E-10 1.7E-14 86.3 8.0 48 78-126 7-58 (72)
30 3zqc_A MYB3; transcription-DNA 99.0 8.6E-11 2.9E-15 97.5 3.8 47 79-125 2-49 (131)
31 1h8a_C AMV V-MYB, MYB transfor 99.0 2E-10 6.8E-15 94.6 6.0 48 77-124 25-73 (128)
32 2yqk_A Arginine-glutamic acid 99.0 3.7E-10 1.3E-14 84.3 6.2 47 78-127 8-55 (63)
33 1h8a_C AMV V-MYB, MYB transfor 99.0 1.3E-10 4.4E-15 95.7 3.8 47 78-124 78-124 (128)
34 1wgx_A KIAA1903 protein; MYB D 99.0 7E-10 2.4E-14 86.2 6.2 45 79-123 8-56 (73)
35 2ckx_A NGTRF1, telomere bindin 99.0 8.9E-10 3.1E-14 86.9 6.8 48 80-127 1-53 (83)
36 2juh_A Telomere binding protei 98.9 1.9E-09 6.4E-14 90.8 7.4 55 73-127 11-70 (121)
37 2roh_A RTBP1, telomere binding 98.9 5.3E-09 1.8E-13 88.1 10.0 53 75-127 27-84 (122)
38 2aje_A Telomere repeat-binding 98.9 1.8E-09 6.1E-14 88.8 5.9 52 75-126 9-65 (105)
39 1h89_C C-MYB, MYB proto-oncoge 98.9 8.5E-10 2.9E-14 93.7 3.6 47 77-123 108-154 (159)
40 2crg_A Metastasis associated p 98.9 3.2E-09 1.1E-13 80.9 6.1 44 77-120 6-50 (70)
41 1h89_C C-MYB, MYB proto-oncoge 98.9 2.2E-09 7.6E-14 91.1 5.6 48 77-124 56-104 (159)
42 1x58_A Hypothetical protein 49 98.8 4.4E-09 1.5E-13 79.7 5.6 46 77-122 6-54 (62)
43 4a69_C Nuclear receptor corepr 98.7 1.6E-08 5.3E-13 81.2 5.7 44 77-120 41-84 (94)
44 1ign_A Protein (RAP1); RAP1,ye 98.6 1.5E-08 5.1E-13 94.1 3.6 50 77-126 6-61 (246)
45 4eef_G F-HB80.4, designed hema 98.6 3E-09 1E-13 83.1 -1.1 43 79-121 20-66 (74)
46 3hm5_A DNA methyltransferase 1 97.8 5.1E-05 1.7E-09 61.4 7.3 52 79-130 30-86 (93)
47 1fex_A TRF2-interacting telome 97.8 2.8E-05 9.6E-10 57.5 5.0 46 79-124 2-57 (59)
48 1ug2_A 2610100B20RIK gene prod 97.5 0.0009 3.1E-08 54.4 11.0 52 78-129 32-86 (95)
49 2xag_B REST corepressor 1; ami 97.2 5.1E-05 1.8E-09 76.2 0.0 41 80-120 190-230 (482)
50 1ofc_X ISWI protein; nuclear p 97.0 0.00073 2.5E-08 64.4 5.6 49 79-127 110-159 (304)
51 2ebi_A DNA binding protein GT- 96.8 0.0025 8.4E-08 49.1 6.0 51 77-127 2-66 (86)
52 2lr8_A CAsp8-associated protei 95.7 0.00025 8.6E-09 54.9 0.0 45 80-125 15-62 (70)
53 4iej_A DNA methyltransferase 1 96.6 0.0053 1.8E-07 49.7 7.3 52 79-130 30-86 (93)
54 1ofc_X ISWI protein; nuclear p 95.8 0.015 5E-07 55.5 6.9 53 78-130 211-279 (304)
55 4b4c_A Chromodomain-helicase-D 95.7 0.018 6.2E-07 50.1 6.6 53 77-129 5-62 (211)
56 4b4c_A Chromodomain-helicase-D 94.8 0.064 2.2E-06 46.6 7.1 50 78-127 133-197 (211)
57 2y9y_A Imitation switch protei 93.7 0.069 2.4E-06 52.3 5.4 48 80-127 124-173 (374)
58 1ign_A Protein (RAP1); RAP1,ye 93.3 0.14 4.9E-06 47.6 6.5 27 100-126 173-199 (246)
59 2xb0_X Chromo domain-containin 90.4 0.16 5.4E-06 47.6 3.4 27 80-106 169-196 (270)
60 1ig6_A MRF-2, modulator recogn 89.9 0.35 1.2E-05 38.6 4.6 55 89-143 37-107 (107)
61 2hzd_A Transcriptional enhance 88.1 0.76 2.6E-05 36.4 5.2 50 77-126 4-74 (82)
62 2y9y_A Imitation switch protei 87.2 1.8 6.2E-05 42.4 8.3 55 78-132 227-297 (374)
63 2xb0_X Chromo domain-containin 83.4 2.3 7.8E-05 39.8 6.8 45 78-122 2-51 (270)
64 2cxy_A BAF250B subunit, HBAF25 71.5 4.6 0.00016 33.0 4.5 30 100-129 74-107 (125)
65 2li6_A SWI/SNF chromatin-remod 68.9 4.9 0.00017 32.5 4.1 28 100-127 72-99 (116)
66 2lm1_A Lysine-specific demethy 63.8 16 0.00053 28.8 6.0 42 87-129 47-100 (107)
67 1kkx_A Transcription regulator 62.5 12 0.0004 30.9 5.2 40 90-129 53-100 (123)
68 2jrz_A Histone demethylase jar 60.3 12 0.00042 30.2 5.0 40 89-128 44-95 (117)
69 3e7l_A Transcriptional regulat 58.5 18 0.0006 25.6 5.0 27 84-110 18-44 (63)
70 2o8x_A Probable RNA polymerase 57.1 31 0.001 23.6 6.0 48 80-129 14-61 (70)
71 2eqy_A RBP2 like, jumonji, at 56.4 19 0.00064 29.3 5.5 40 90-129 47-98 (122)
72 2jxj_A Histone demethylase jar 54.4 9.5 0.00032 29.4 3.2 29 99-127 58-90 (96)
73 1fse_A GERE; helix-turn-helix 53.5 44 0.0015 23.0 6.4 49 78-129 8-56 (74)
74 3c57_A Two component transcrip 49.9 59 0.002 24.4 7.1 49 79-130 25-73 (95)
75 1c20_A DEAD ringer protein; DN 47.1 33 0.0011 28.0 5.5 40 90-129 57-109 (128)
76 1ntc_A Protein (nitrogen regul 46.6 30 0.001 26.2 4.9 38 84-122 50-87 (91)
77 2kk0_A AT-rich interactive dom 45.3 24 0.00081 29.6 4.5 30 100-129 87-121 (145)
78 2jt1_A PEFI protein; solution 45.3 41 0.0014 25.4 5.4 47 87-138 6-59 (77)
79 1x3u_A Transcriptional regulat 44.6 39 0.0013 23.7 5.0 45 81-128 16-60 (79)
80 3i4p_A Transcriptional regulat 44.2 23 0.00078 29.1 4.2 43 85-132 3-46 (162)
81 3mzy_A RNA polymerase sigma-H 43.9 56 0.0019 25.1 6.2 33 96-129 122-154 (164)
82 1je8_A Nitrate/nitrite respons 42.0 55 0.0019 24.0 5.6 48 78-128 18-65 (82)
83 2rq5_A Protein jumonji; develo 41.6 23 0.0008 29.1 3.8 31 99-129 64-99 (121)
84 3hug_A RNA polymerase sigma fa 39.2 80 0.0027 23.2 6.2 33 96-129 51-83 (92)
85 3ulq_B Transcriptional regulat 39.2 67 0.0023 24.3 5.8 47 78-127 26-72 (90)
86 1umq_A Photosynthetic apparatu 39.0 35 0.0012 26.1 4.2 28 83-110 39-66 (81)
87 1ku3_A Sigma factor SIGA; heli 37.6 95 0.0033 21.8 6.2 47 81-128 10-59 (73)
88 2lc3_A E3 ubiquitin-protein li 30.5 45 0.0015 26.7 3.6 56 77-132 11-85 (88)
89 1eto_A FIS, factor for inversi 30.1 76 0.0026 24.8 4.9 27 84-110 57-83 (98)
90 1p4w_A RCSB; solution structur 29.8 1.3E+02 0.0044 23.2 6.2 47 79-128 32-78 (99)
91 2dbb_A Putative HTH-type trans 29.7 1.2E+02 0.004 24.0 6.2 43 85-132 9-52 (151)
92 2e1c_A Putative HTH-type trans 28.7 1.1E+02 0.0037 25.5 6.0 44 84-132 26-70 (171)
93 1or7_A Sigma-24, RNA polymeras 28.4 1.3E+02 0.0045 24.0 6.2 31 98-129 156-186 (194)
94 2p7v_B Sigma-70, RNA polymeras 28.1 88 0.003 21.7 4.6 46 83-129 7-55 (68)
95 2rnj_A Response regulator prot 27.4 86 0.0029 23.1 4.6 49 78-129 26-74 (91)
96 2cyy_A Putative HTH-type trans 26.5 1.4E+02 0.0049 23.6 6.2 43 85-132 7-50 (151)
97 1tty_A Sigma-A, RNA polymerase 25.6 1.5E+02 0.0052 21.6 5.7 47 82-129 19-68 (87)
98 1qgp_A Protein (double strande 24.7 98 0.0034 22.9 4.5 47 83-134 12-62 (77)
99 3fdq_A Motility gene repressor 24.6 2.2E+02 0.0075 24.8 7.1 62 79-143 69-140 (170)
100 1qbj_A Protein (double-strande 24.0 1.4E+02 0.005 22.4 5.4 48 84-136 9-60 (81)
101 1rp3_A RNA polymerase sigma fa 22.8 1.8E+02 0.0062 23.7 6.2 31 98-129 203-233 (239)
102 2da3_A Alpha-fetoprotein enhan 22.2 2.2E+02 0.0076 20.4 8.1 52 77-129 19-74 (80)
103 2yqf_A Ankyrin-1; death domain 22.2 1.5E+02 0.005 23.3 5.3 28 83-110 14-41 (111)
104 1ngr_A P75 low affinity neurot 21.2 35 0.0012 26.1 1.4 29 84-118 12-40 (85)
105 1wh5_A ZF-HD homeobox family p 21.1 2.6E+02 0.0088 20.7 6.6 43 77-120 19-69 (80)
106 2cg4_A Regulatory protein ASNC 20.6 2.2E+02 0.0075 22.5 6.1 43 85-132 8-51 (152)
107 1tc3_C Protein (TC3 transposas 20.6 1.5E+02 0.0052 17.9 4.4 37 81-119 5-41 (51)
108 2juh_A Telomere binding protei 20.4 56 0.0019 27.1 2.6 25 79-103 79-103 (121)
109 2dmt_A Homeobox protein BARH-l 20.3 2.5E+02 0.0087 20.4 9.6 51 77-128 19-73 (80)
No 1
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.67 E-value=1.9e-16 Score=120.17 Aligned_cols=57 Identities=39% Similarity=0.673 Sum_probs=52.5
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 020749 76 TKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (322)
Q Consensus 76 ~k~r~~WT~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRSHaQKYf~kl~k~g~ 132 (322)
..+++.||+|||++|++++++||.+|..||++|++||..|||+||++||.+..+.|.
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~g~ 62 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGL 62 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCT
T ss_pred CcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 346789999999999999999999999999999999999999999999999876643
No 2
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.66 E-value=8.4e-17 Score=125.65 Aligned_cols=59 Identities=29% Similarity=0.429 Sum_probs=55.4
Q ss_pred CCCcCCCCcccccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHH
Q 020749 65 PSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKY 123 (322)
Q Consensus 65 ~~kKirKPyti~k~r~~WT~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRSHaQKY 123 (322)
+++|.++++.....+..||.|||++|+++|++||++|++||++|++||..|||.||++|
T Consensus 4 g~~~~~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 4 GSSGTLAKSKGASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SSSCCCCCCCSSCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCccCCccccccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 46788899988889999999999999999999999999999999999999999999766
No 3
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=3.4e-16 Score=119.03 Aligned_cols=56 Identities=36% Similarity=0.668 Sum_probs=52.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC------chHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 020749 77 KSRESWTEQEHDKFLEALQLFD------RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (322)
Q Consensus 77 k~r~~WT~EEhelFLeaLk~yG------rdWkkIA~~VgTRT~~QcRSHaQKYf~kl~k~g~ 132 (322)
..++.||.|||++|+++|++|| .+|.+||++|++||..|||+||++||.++.+.|.
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 3578999999999999999999 7999999999999999999999999999877764
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.54 E-value=6.6e-15 Score=107.95 Aligned_cols=48 Identities=23% Similarity=0.538 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-chHHHHHHHhC-CCCHHHHHHHHHHHHH
Q 020749 78 SRESWTEQEHDKFLEALQLFD-RDWKKIEAFIG-SKTVIQIRSHAQKYFL 125 (322)
Q Consensus 78 ~r~~WT~EEhelFLeaLk~yG-rdWkkIA~~Vg-TRT~~QcRSHaQKYf~ 125 (322)
.++.||.|||++|+++|++|| ++|++||++|+ +||..|||.||++||.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHcc
Confidence 367899999999999999999 89999999999 9999999999999975
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.53 E-value=1.2e-14 Score=106.87 Aligned_cols=49 Identities=31% Similarity=0.482 Sum_probs=45.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC-chHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020749 77 KSRESWTEQEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYFL 125 (322)
Q Consensus 77 k~r~~WT~EEhelFLeaLk~yG-rdWkkIA~~VgTRT~~QcRSHaQKYf~ 125 (322)
..+..||.|||++|++++++|| ++|++||++|++||..|||.||++|+.
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~ 55 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFS 55 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence 4568999999999999999999 799999999999999999999998865
No 6
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.46 E-value=7.7e-14 Score=99.13 Aligned_cols=48 Identities=25% Similarity=0.491 Sum_probs=44.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020749 78 SRESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFL 125 (322)
Q Consensus 78 ~r~~WT~EEhelFLeaLk~yGr-dWkkIA~~VgTRT~~QcRSHaQKYf~ 125 (322)
+++.||.|||++|++++++||. +|..||++|++||..|||.||++|+.
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~ 50 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 50 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999997 99999999999999999999998863
No 7
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=99.45 E-value=4.5e-14 Score=130.02 Aligned_cols=65 Identities=26% Similarity=0.485 Sum_probs=60.2
Q ss_pred CCCCCcCCCCcccccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 020749 63 EDPSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 127 (322)
Q Consensus 63 ed~~kKirKPyti~k~r~~WT~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRSHaQKYf~kl 127 (322)
++...+.|+|+.+.+....||+||+++|++||.+||++|..||++|++||..|||+||++|++++
T Consensus 117 ~~~Ie~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRl 181 (235)
T 2iw5_B 117 DGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF 181 (235)
T ss_dssp TTTTGGGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred HhhcccccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence 45677889999999999999999999999999999999999999999999999999998887663
No 8
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.43 E-value=1.4e-13 Score=100.50 Aligned_cols=49 Identities=18% Similarity=0.401 Sum_probs=45.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC-chHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020749 77 KSRESWTEQEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYFL 125 (322)
Q Consensus 77 k~r~~WT~EEhelFLeaLk~yG-rdWkkIA~~VgTRT~~QcRSHaQKYf~ 125 (322)
..++.||.|||++|++++++|| ++|..||++|++||..|||.||++|+.
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLS 55 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999 699999999999999999999987753
No 9
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.42 E-value=1.4e-13 Score=98.02 Aligned_cols=47 Identities=17% Similarity=0.420 Sum_probs=44.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHH
Q 020749 78 SRESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 124 (322)
Q Consensus 78 ~r~~WT~EEhelFLeaLk~yGr-dWkkIA~~VgTRT~~QcRSHaQKYf 124 (322)
.++.||.|||++|++++++||. +|..||++|++||..|||.||++|+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 4689999999999999999996 7999999999999999999998875
No 10
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=5.1e-13 Score=99.41 Aligned_cols=55 Identities=22% Similarity=0.474 Sum_probs=49.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 020749 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (322)
Q Consensus 77 k~r~~WT~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRSHaQKYf~kl~k~g~ 132 (322)
..++.||.|||++|++++++||.+|.+||+++ .||..|||.||+.|+....+.+.
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~~~-gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTTCHHHHHHHH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHhccc-CcCHHHHHHHHHHHhChHhcCCC
Confidence 46789999999999999999999999999955 59999999999999998877653
No 11
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.39 E-value=7.7e-13 Score=102.25 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=44.5
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC----chHHHHHHHhCCCCHHHHHHHHHHHH
Q 020749 77 KSRESWTEQEHDKFLEALQLFD----RDWKKIEAFIGSKTVIQIRSHAQKYF 124 (322)
Q Consensus 77 k~r~~WT~EEhelFLeaLk~yG----rdWkkIA~~VgTRT~~QcRSHaQKYf 124 (322)
..++.||.||+++|+++|++|| .+|.+||++|++||..|||.||+.+.
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~ 67 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLV 67 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4778999999999999999999 68999999999999999999987763
No 12
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.37 E-value=7.3e-13 Score=94.89 Aligned_cols=47 Identities=15% Similarity=0.377 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHHcC-chHHHHHHHhC--CCCHHHHHHHHHHHHH
Q 020749 79 RESWTEQEHDKFLEALQLFD-RDWKKIEAFIG--SKTVIQIRSHAQKYFL 125 (322)
Q Consensus 79 r~~WT~EEhelFLeaLk~yG-rdWkkIA~~Vg--TRT~~QcRSHaQKYf~ 125 (322)
++.||+|||++|++++++|| ++|..||++++ +||..|||.||.+|..
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 68999999999999999999 69999999999 9999999999988753
No 13
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.36 E-value=1.2e-12 Score=98.22 Aligned_cols=51 Identities=14% Similarity=0.356 Sum_probs=47.0
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcC-chHHHHHHHhC--CCCHHHHHHHHHHHHHH
Q 020749 76 TKSRESWTEQEHDKFLEALQLFD-RDWKKIEAFIG--SKTVIQIRSHAQKYFLK 126 (322)
Q Consensus 76 ~k~r~~WT~EEhelFLeaLk~yG-rdWkkIA~~Vg--TRT~~QcRSHaQKYf~k 126 (322)
.+.++.||.||+++|++++++|| ++|..||++++ +||..|||.||++|+..
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence 45789999999999999999999 69999999999 99999999999888655
No 14
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=8.2e-13 Score=99.30 Aligned_cols=49 Identities=14% Similarity=0.376 Sum_probs=45.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC-chHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020749 77 KSRESWTEQEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYFL 125 (322)
Q Consensus 77 k~r~~WT~EEhelFLeaLk~yG-rdWkkIA~~VgTRT~~QcRSHaQKYf~ 125 (322)
.+++.||.|||++|++++++|| .+|..||++|++||..|||.||++|+.
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLD 56 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999 799999999999999999999987753
No 15
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.99 E-value=1.5e-13 Score=108.81 Aligned_cols=55 Identities=27% Similarity=0.409 Sum_probs=49.8
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 020749 76 TKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKN 130 (322)
Q Consensus 76 ~k~r~~WT~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRSHaQKYf~kl~k~ 130 (322)
...++.||.|||++|++++++||.+|..||++|++||..|||+||+.|+.++...
T Consensus 13 ~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~l~ 67 (89)
T 2ltp_A 13 NLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLD 67 (89)
Confidence 3467899999999999999999999999999999999999999999988776443
No 16
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.31 E-value=3.2e-12 Score=95.93 Aligned_cols=47 Identities=17% Similarity=0.380 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-chHHHHHHHhC--CCCHHHHHHHHHHHH
Q 020749 78 SRESWTEQEHDKFLEALQLFD-RDWKKIEAFIG--SKTVIQIRSHAQKYF 124 (322)
Q Consensus 78 ~r~~WT~EEhelFLeaLk~yG-rdWkkIA~~Vg--TRT~~QcRSHaQKYf 124 (322)
.+..||+|||++|+++|++|| ++|.+||++++ +||..|||.||..+.
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~ 59 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMK 59 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999 59999999876 899999999997764
No 17
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=99.29 E-value=1.8e-12 Score=129.60 Aligned_cols=65 Identities=26% Similarity=0.485 Sum_probs=58.1
Q ss_pred CCCCCcCCCCcccccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 020749 63 EDPSKKIRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 127 (322)
Q Consensus 63 ed~~kKirKPyti~k~r~~WT~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRSHaQKYf~kl 127 (322)
+......|.++.+.+...+||+||+++|++||++||++|..||++|||||..|||+|+++|+.++
T Consensus 364 ~~g~~~~r~~e~~~~~~~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr~ 428 (482)
T 2xag_B 364 DGGIEPYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF 428 (482)
T ss_dssp TTTTGGGCCCCCCCCCCSCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred hcccccccCCccccccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence 34455677888888899999999999999999999999999999999999999999998886654
No 18
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=1.2e-11 Score=91.60 Aligned_cols=44 Identities=16% Similarity=0.314 Sum_probs=41.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHH
Q 020749 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHA 120 (322)
Q Consensus 77 k~r~~WT~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRSHa 120 (322)
+....||+||+++|+++|.+||++|.+||++|++||..||+.||
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Y 53 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYY 53 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHH
Confidence 45689999999999999999999999999999999999999864
No 19
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.23 E-value=1.5e-11 Score=99.09 Aligned_cols=62 Identities=21% Similarity=0.475 Sum_probs=49.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----chHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCC
Q 020749 78 SRESWTEQEHDKFLEALQLFD----RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPR 140 (322)
Q Consensus 78 ~r~~WT~EEhelFLeaLk~yG----rdWkkIA~~VgTRT~~QcRSHaQKYf~kl~k~g~~e~iP~pr 140 (322)
..+.||.||+++|+++|.+|| .+|.+||++|++||..|||.||++++..+..... ..+|.|.
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~ies-g~vp~P~ 72 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIES-GKVPFPN 72 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHH-SSCCC--
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhc-CCCCCCC
Confidence 357899999999999999997 5899999999999999999999999877644321 2355543
No 20
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.20 E-value=3.3e-11 Score=96.86 Aligned_cols=53 Identities=17% Similarity=0.330 Sum_probs=49.0
Q ss_pred CCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 020749 78 SRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKN 130 (322)
Q Consensus 78 ~r~~WT~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRSHaQKYf~kl~k~ 130 (322)
.++.||.|||++|++++++||.+|..||++|++||..|||+||..+..++.+.
T Consensus 52 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~r~~~~~ 104 (107)
T 2k9n_A 52 RTDPWSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKH 104 (107)
T ss_dssp TTCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred cccccCHHHHHHHHHHHHHhCcCHHHHHHHCCCCCHHHHHHHHHHHHhhHHHh
Confidence 57899999999999999999999999999999999999999999888776543
No 21
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.20 E-value=2.2e-11 Score=94.14 Aligned_cols=52 Identities=15% Similarity=0.184 Sum_probs=43.3
Q ss_pred CCCCcccccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHH
Q 020749 69 IRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQ 121 (322)
Q Consensus 69 irKPyti~k~r~~WT~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRSHaQ 121 (322)
...-+....+++.||+|||++|++++++||.+|.+||+++ +||..|||+||.
T Consensus 13 ~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 13 NLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCR 64 (73)
T ss_dssp ------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHH
T ss_pred eeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHH
Confidence 3444445567899999999999999999999999999999 999999999985
No 22
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.18 E-value=6.7e-11 Score=90.03 Aligned_cols=56 Identities=32% Similarity=0.439 Sum_probs=50.0
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCch---HHHHHHHhC--CCCHHHHHHHHHHHHHHHhhc
Q 020749 75 ITKSRESWTEQEHDKFLEALQLFDRD---WKKIEAFIG--SKTVIQIRSHAQKYFLKVQKN 130 (322)
Q Consensus 75 i~k~r~~WT~EEhelFLeaLk~yGrd---WkkIA~~Vg--TRT~~QcRSHaQKYf~kl~k~ 130 (322)
..+.+-.||+|+|++|++|++++|.+ |++|.++++ +.|..||+||.|||+.+++|.
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 35678999999999999999999964 899999876 679999999999999999764
No 23
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.17 E-value=2.8e-11 Score=99.99 Aligned_cols=49 Identities=22% Similarity=0.422 Sum_probs=45.9
Q ss_pred ccCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHH
Q 020749 76 TKSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 124 (322)
Q Consensus 76 ~k~r~~WT~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRSHaQKYf 124 (322)
...++.||+|||++|++++++||.+|+.||++|++||..|||.||++|+
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 3467899999999999999999999999999999999999999998875
No 24
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.15 E-value=3.9e-11 Score=99.12 Aligned_cols=51 Identities=25% Similarity=0.464 Sum_probs=46.2
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 020749 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 127 (322)
Q Consensus 77 k~r~~WT~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRSHaQKYf~kl 127 (322)
.+++.||.|||++|++++++||.+|.+||++|++||..|||+||..+.+++
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred cccccCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 357899999999999999999999999999999999999999987765553
No 25
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.15 E-value=2.9e-11 Score=100.33 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=48.6
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 020749 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKN 130 (322)
Q Consensus 77 k~r~~WT~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRSHaQKYf~kl~k~ 130 (322)
..++.||.|||++|++++.+||.+|..||++|++||..|||+||+.++.+..+.
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~l~~~~~~ 105 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRIST 105 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSCSCHHHHTTTSTTCCHHHHHHHHHHTTGGGCCC
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 356899999999999999999999999999999999999999998887765443
No 26
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.14 E-value=3.5e-11 Score=95.73 Aligned_cols=49 Identities=22% Similarity=0.417 Sum_probs=45.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020749 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFL 125 (322)
Q Consensus 77 k~r~~WT~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRSHaQKYf~ 125 (322)
..++.||.|||++|++++++||.+|..||++|++||..||++||..+..
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 102 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred ccccCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 3578999999999999999999999999999999999999999876643
No 27
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.11 E-value=7.3e-11 Score=94.84 Aligned_cols=46 Identities=22% Similarity=0.417 Sum_probs=42.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHH
Q 020749 79 RESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 124 (322)
Q Consensus 79 r~~WT~EEhelFLeaLk~yGr-dWkkIA~~VgTRT~~QcRSHaQKYf 124 (322)
++.||.|||++|++++++||. +|..||++|++||..||+.||.+|+
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHH
Confidence 468999999999999999995 9999999999999999999998774
No 28
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.11 E-value=5.6e-11 Score=94.53 Aligned_cols=47 Identities=17% Similarity=0.407 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHH
Q 020749 78 SRESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 124 (322)
Q Consensus 78 ~r~~WT~EEhelFLeaLk~yGr-dWkkIA~~VgTRT~~QcRSHaQKYf 124 (322)
.++.||+|||++|++++++||. +|..||++|++||..||+.||++|+
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhcc
Confidence 4689999999999999999996 8999999999999999999998774
No 29
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.05 E-value=4.9e-10 Score=86.25 Aligned_cols=48 Identities=19% Similarity=0.438 Sum_probs=42.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----chHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020749 78 SRESWTEQEHDKFLEALQLFD----RDWKKIEAFIGSKTVIQIRSHAQKYFLK 126 (322)
Q Consensus 78 ~r~~WT~EEhelFLeaLk~yG----rdWkkIA~~VgTRT~~QcRSHaQKYf~k 126 (322)
....||.||+++|.++|.+|+ .+|.+||+++ .||..||+.||+++...
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 457899999999999999997 4899999999 59999999998876444
No 30
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.04 E-value=8.6e-11 Score=97.48 Aligned_cols=47 Identities=21% Similarity=0.342 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHHHcC-chHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020749 79 RESWTEQEHDKFLEALQLFD-RDWKKIEAFIGSKTVIQIRSHAQKYFL 125 (322)
Q Consensus 79 r~~WT~EEhelFLeaLk~yG-rdWkkIA~~VgTRT~~QcRSHaQKYf~ 125 (322)
++.||.|||++|++++++|| ++|+.||++|++||..||+.||++|+.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~ 49 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLD 49 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccC
Confidence 57899999999999999999 699999999999999999999988753
No 31
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.04 E-value=2e-10 Score=94.60 Aligned_cols=48 Identities=19% Similarity=0.437 Sum_probs=44.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHH
Q 020749 77 KSRESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 124 (322)
Q Consensus 77 k~r~~WT~EEhelFLeaLk~yGr-dWkkIA~~VgTRT~~QcRSHaQKYf 124 (322)
..++.||.|||++|++++++||. +|..||++|++||..||+.||++|+
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 35789999999999999999995 8999999999999999999998764
No 32
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=3.7e-10 Score=84.33 Aligned_cols=47 Identities=19% Similarity=0.506 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCchHHHHHH-HhCCCCHHHHHHHHHHHHHHH
Q 020749 78 SRESWTEQEHDKFLEALQLFDRDWKKIEA-FIGSKTVIQIRSHAQKYFLKV 127 (322)
Q Consensus 78 ~r~~WT~EEhelFLeaLk~yGrdWkkIA~-~VgTRT~~QcRSHaQKYf~kl 127 (322)
....||+||+++|+++|.+||++|.+|++ +|++||..||..+ |+...
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~f---YY~wK 55 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITF---YYYWK 55 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHH---HHHHH
T ss_pred CCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHH---Hhccc
Confidence 46899999999999999999999999998 6999999999974 55543
No 33
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.01 E-value=1.3e-10 Score=95.73 Aligned_cols=47 Identities=21% Similarity=0.456 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHH
Q 020749 78 SRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYF 124 (322)
Q Consensus 78 ~r~~WT~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRSHaQKYf 124 (322)
.++.||+|||++|++++++||.+|..||++|++||..||++||..+.
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~ 124 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTM 124 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTT
T ss_pred ccccCCHHHHHHHHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999986543
No 34
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.97 E-value=7e-10 Score=86.19 Aligned_cols=45 Identities=20% Similarity=0.407 Sum_probs=40.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCc----hHHHHHHHhCCCCHHHHHHHHHHH
Q 020749 79 RESWTEQEHDKFLEALQLFDR----DWKKIEAFIGSKTVIQIRSHAQKY 123 (322)
Q Consensus 79 r~~WT~EEhelFLeaLk~yGr----dWkkIA~~VgTRT~~QcRSHaQKY 123 (322)
...||.||+++|++||..|++ +|.+||++||+||..||+.||+.+
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 467999999999999999985 799999999999999999987543
No 35
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.97 E-value=8.9e-10 Score=86.94 Aligned_cols=48 Identities=10% Similarity=0.340 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHHHcCc-hHHHHHHH----hCCCCHHHHHHHHHHHHHHH
Q 020749 80 ESWTEQEHDKFLEALQLFDR-DWKKIEAF----IGSKTVIQIRSHAQKYFLKV 127 (322)
Q Consensus 80 ~~WT~EEhelFLeaLk~yGr-dWkkIA~~----VgTRT~~QcRSHaQKYf~kl 127 (322)
..||.||++.|++++++||. +|++|++. +..||..|||.||.+++.+.
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 47999999999999999996 99999985 78999999999999887654
No 36
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.92 E-value=1.9e-09 Score=90.76 Aligned_cols=55 Identities=11% Similarity=0.327 Sum_probs=48.6
Q ss_pred cccccCCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHh----CCCCHHHHHHHHHHHHHHH
Q 020749 73 YTITKSRESWTEQEHDKFLEALQLFDR-DWKKIEAFI----GSKTVIQIRSHAQKYFLKV 127 (322)
Q Consensus 73 yti~k~r~~WT~EEhelFLeaLk~yGr-dWkkIA~~V----gTRT~~QcRSHaQKYf~kl 127 (322)
....+.++.||.||++.|++++++||. +|..|+++. ..||..|||.+|..++.+.
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~ 70 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 70 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhh
Confidence 344567899999999999999999996 999999875 7899999999999887664
No 37
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.92 E-value=5.3e-09 Score=88.12 Aligned_cols=53 Identities=13% Similarity=0.306 Sum_probs=46.9
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHh----CCCCHHHHHHHHHHHHHHH
Q 020749 75 ITKSRESWTEQEHDKFLEALQLFDR-DWKKIEAFI----GSKTVIQIRSHAQKYFLKV 127 (322)
Q Consensus 75 i~k~r~~WT~EEhelFLeaLk~yGr-dWkkIA~~V----gTRT~~QcRSHaQKYf~kl 127 (322)
..+.++.||.||++.|++++++||. +|+.|++.. ..||..|||.+|.+++..-
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 3457889999999999999999996 999999864 7999999999999887664
No 38
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.89 E-value=1.8e-09 Score=88.80 Aligned_cols=52 Identities=10% Similarity=0.334 Sum_probs=45.7
Q ss_pred cccCCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHh----CCCCHHHHHHHHHHHHHH
Q 020749 75 ITKSRESWTEQEHDKFLEALQLFDR-DWKKIEAFI----GSKTVIQIRSHAQKYFLK 126 (322)
Q Consensus 75 i~k~r~~WT~EEhelFLeaLk~yGr-dWkkIA~~V----gTRT~~QcRSHaQKYf~k 126 (322)
..+.+..||.||++.|++++++||. +|+.|++.. ..||..|||.+|.+++.+
T Consensus 9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 3457899999999999999999996 999999854 789999999999887654
No 39
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.87 E-value=8.5e-10 Score=93.71 Aligned_cols=47 Identities=23% Similarity=0.439 Sum_probs=43.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHH
Q 020749 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKY 123 (322)
Q Consensus 77 k~r~~WT~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRSHaQKY 123 (322)
..++.||+||+++|++++++||.+|..||++|++||..||++||..+
T Consensus 108 ~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 108 VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred ccccCCChHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999998654
No 40
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.86 E-value=3.2e-09 Score=80.94 Aligned_cols=44 Identities=27% Similarity=0.455 Sum_probs=40.9
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHH-HhCCCCHHHHHHHH
Q 020749 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEA-FIGSKTVIQIRSHA 120 (322)
Q Consensus 77 k~r~~WT~EEhelFLeaLk~yGrdWkkIA~-~VgTRT~~QcRSHa 120 (322)
+....||+||+++|++||.+||++|..|++ +|++||..||..++
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fY 50 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYY 50 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHH
Confidence 567899999999999999999999999999 79999999999853
No 41
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.85 E-value=2.2e-09 Score=91.13 Aligned_cols=48 Identities=17% Similarity=0.384 Sum_probs=44.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHH
Q 020749 77 KSRESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYF 124 (322)
Q Consensus 77 k~r~~WT~EEhelFLeaLk~yGr-dWkkIA~~VgTRT~~QcRSHaQKYf 124 (322)
..++.||.|||++|++++++||. +|..||+++++||..|||.||++|+
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred cCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 35789999999999999999995 8999999999999999999998774
No 42
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=98.82 E-value=4.4e-09 Score=79.70 Aligned_cols=46 Identities=13% Similarity=0.427 Sum_probs=41.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHH---HHhCCCCHHHHHHHHHH
Q 020749 77 KSRESWTEQEHDKFLEALQLFDRDWKKIE---AFIGSKTVIQIRSHAQK 122 (322)
Q Consensus 77 k~r~~WT~EEhelFLeaLk~yGrdWkkIA---~~VgTRT~~QcRSHaQK 122 (322)
.++..||+||++.|++++++||..|++|+ .++..||.+.++.+|..
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~ 54 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHR 54 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHH
Confidence 46889999999999999999999999999 47889999999997643
No 43
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=98.70 E-value=1.6e-08 Score=81.15 Aligned_cols=44 Identities=25% Similarity=0.406 Sum_probs=41.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHH
Q 020749 77 KSRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHA 120 (322)
Q Consensus 77 k~r~~WT~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRSHa 120 (322)
+....||+||+++|.+++.+||++|.+|+++|++||..||..|+
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~Y 84 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYY 84 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHH
Confidence 34689999999999999999999999999999999999999863
No 44
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.62 E-value=1.5e-08 Score=94.09 Aligned_cols=50 Identities=20% Similarity=0.377 Sum_probs=44.8
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCch------HHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020749 77 KSRESWTEQEHDKFLEALQLFDRD------WKKIEAFIGSKTVIQIRSHAQKYFLK 126 (322)
Q Consensus 77 k~r~~WT~EEhelFLeaLk~yGrd------WkkIA~~VgTRT~~QcRSHaQKYf~k 126 (322)
.++..||+|||+++++++++||.. |..||+++++||..|||+||..|+.+
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~ 61 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSK 61 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence 356799999999999999999964 99999999999999999999998765
No 45
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.60 E-value=3e-09 Score=83.11 Aligned_cols=43 Identities=23% Similarity=0.530 Sum_probs=39.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCc----hHHHHHHHhCCCCHHHHHHHHH
Q 020749 79 RESWTEQEHDKFLEALQLFDR----DWKKIEAFIGSKTVIQIRSHAQ 121 (322)
Q Consensus 79 r~~WT~EEhelFLeaLk~yGr----dWkkIA~~VgTRT~~QcRSHaQ 121 (322)
...||.||+++|.+||.+|++ +|.+||+.||+||+.||+.|+|
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 457999999999999999985 7999999999999999999986
No 46
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.80 E-value=5.1e-05 Score=61.36 Aligned_cols=52 Identities=17% Similarity=0.326 Sum_probs=44.7
Q ss_pred CCCCCHHHHHHHHHHHHHcCchHHHHHHHh-----CCCCHHHHHHHHHHHHHHHhhc
Q 020749 79 RESWTEQEHDKFLEALQLFDRDWKKIEAFI-----GSKTVIQIRSHAQKYFLKVQKN 130 (322)
Q Consensus 79 r~~WT~EEhelFLeaLk~yGrdWkkIA~~V-----gTRT~~QcRSHaQKYf~kl~k~ 130 (322)
...||.||.+.|++.+++||.+|..|+... +.||.+++|+|+-..-+++.+.
T Consensus 30 ~~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~ 86 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 489999999999999999999999999887 5799999999876555555443
No 47
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.77 E-value=2.8e-05 Score=57.52 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=41.6
Q ss_pred CCCCCHHHHHHHHHHHHHc--------C-chHHHHHH-HhCCCCHHHHHHHHHHHH
Q 020749 79 RESWTEQEHDKFLEALQLF--------D-RDWKKIEA-FIGSKTVIQIRSHAQKYF 124 (322)
Q Consensus 79 r~~WT~EEhelFLeaLk~y--------G-rdWkkIA~-~VgTRT~~QcRSHaQKYf 124 (322)
|..||+|||..|++.|.+| | .-|+.|++ .+..+|..++|.||.|++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l 57 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHL 57 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHc
Confidence 5789999999999999999 5 37999999 899999999999987764
No 48
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.54 E-value=0.0009 Score=54.43 Aligned_cols=52 Identities=15% Similarity=0.234 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc---hHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 020749 78 SRESWTEQEHDKFLEALQLFDR---DWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (322)
Q Consensus 78 ~r~~WT~EEhelFLeaLk~yGr---dWkkIA~~VgTRT~~QcRSHaQKYf~kl~k 129 (322)
.--.||.|||+-+|...++-|. .|..||+.++.|++.||++|+|....-+++
T Consensus 32 ~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~Lf~~ 86 (95)
T 1ug2_A 32 KVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLFHT 86 (95)
T ss_dssp CCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999995 999999999999999999999886554444
No 49
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.20 E-value=5.1e-05 Score=76.20 Aligned_cols=41 Identities=15% Similarity=0.443 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHH
Q 020749 80 ESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHA 120 (322)
Q Consensus 80 ~~WT~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRSHa 120 (322)
..||++|..+|.++|.+||++|.+|+++|++||..+|..|+
T Consensus 190 d~WT~eE~~lFe~al~~yGKdF~~I~~~lp~Ksv~e~V~yY 230 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGKTFHRIQQMLPDKSIASLVKFY 230 (482)
T ss_dssp -----------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCccHHHHHHHcCCCCHHHHHHHh
Confidence 58999999999999999999999999999999999999864
No 50
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.99 E-value=0.00073 Score=64.39 Aligned_cols=49 Identities=18% Similarity=0.392 Sum_probs=45.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 020749 79 RESWTEQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKV 127 (322)
Q Consensus 79 r~~WT~EEhelFLeaLk~yGr-dWkkIA~~VgTRT~~QcRSHaQKYf~kl 127 (322)
=+.||..+-..|+.|+.+||+ +|..||+.|++||..+|+.|++-++.+.
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHG
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhH
Confidence 357999999999999999997 9999999999999999999998877665
No 51
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=96.77 E-value=0.0025 Score=49.08 Aligned_cols=51 Identities=14% Similarity=0.289 Sum_probs=40.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC----------chHHHHHHHhC----CCCHHHHHHHHHHHHHHH
Q 020749 77 KSRESWTEQEHDKFLEALQLFD----------RDWKKIEAFIG----SKTVIQIRSHAQKYFLKV 127 (322)
Q Consensus 77 k~r~~WT~EEhelFLeaLk~yG----------rdWkkIA~~Vg----TRT~~QcRSHaQKYf~kl 127 (322)
+.+..||.+|..+||++..... ..|+.||+.+. .||+.||+..|......-
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Y 66 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEF 66 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 3567999999999999886532 27999997654 799999999887654443
No 52
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=95.74 E-value=0.00025 Score=54.90 Aligned_cols=45 Identities=18% Similarity=0.184 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHHcCc---hHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020749 80 ESWTEQEHDKFLEALQLFDR---DWKKIEAFIGSKTVIQIRSHAQKYFL 125 (322)
Q Consensus 80 ~~WT~EEhelFLeaLk~yGr---dWkkIA~~VgTRT~~QcRSHaQKYf~ 125 (322)
-.||.|||.-+|...++-|. .|..||+.+ .||+.||..|+|....
T Consensus 15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 47999999999999999995 999999988 7999999999877533
No 53
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.64 E-value=0.0053 Score=49.70 Aligned_cols=52 Identities=17% Similarity=0.326 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCchHHHHHHHh-----CCCCHHHHHHHHHHHHHHHhhc
Q 020749 79 RESWTEQEHDKFLEALQLFDRDWKKIEAFI-----GSKTVIQIRSHAQKYFLKVQKN 130 (322)
Q Consensus 79 r~~WT~EEhelFLeaLk~yGrdWkkIA~~V-----gTRT~~QcRSHaQKYf~kl~k~ 130 (322)
...||.||.+.|.+.+++|+-+|--|+... +.||.+++|.|+=...+++.+.
T Consensus 30 ~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~ 86 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANV 86 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999999999754 3799999999876666666543
No 54
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.85 E-value=0.015 Score=55.51 Aligned_cols=53 Identities=15% Similarity=0.310 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHHHcCc----hHHHHH------------HHhCCCCHHHHHHHHHHHHHHHhhc
Q 020749 78 SRESWTEQEHDKFLEALQLFDR----DWKKIE------------AFIGSKTVIQIRSHAQKYFLKVQKN 130 (322)
Q Consensus 78 ~r~~WT~EEhelFLeaLk~yGr----dWkkIA------------~~VgTRT~~QcRSHaQKYf~kl~k~ 130 (322)
++..||+|||..||-+|.+||- +|..|. -|+.+||+.+|..|++-...-+.|.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~iekE 279 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIERE 279 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 5568999999999999999994 899996 3788999999999999887777664
No 55
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=95.74 E-value=0.018 Score=50.13 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=43.3
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC---chHHHHHHH--hCCCCHHHHHHHHHHHHHHHhh
Q 020749 77 KSRESWTEQEHDKFLEALQLFD---RDWKKIEAF--IGSKTVIQIRSHAQKYFLKVQK 129 (322)
Q Consensus 77 k~r~~WT~EEhelFLeaLk~yG---rdWkkIA~~--VgTRT~~QcRSHaQKYf~kl~k 129 (322)
+....||+.|-..|+.++.+|| .+|..|++. +..||..+|+.+++.+..+..+
T Consensus 5 ~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~ 62 (211)
T 4b4c_A 5 ENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIK 62 (211)
T ss_dssp ---CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 4567999999999999999999 389999865 5689999999988887766544
No 56
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.80 E-value=0.064 Score=46.60 Aligned_cols=50 Identities=12% Similarity=0.251 Sum_probs=37.6
Q ss_pred CCCCCCHHHHHHHHHHHHHcC-chHHHHHH--H------------hCCCCHHHHHHHHHHHHHHH
Q 020749 78 SRESWTEQEHDKFLEALQLFD-RDWKKIEA--F------------IGSKTVIQIRSHAQKYFLKV 127 (322)
Q Consensus 78 ~r~~WT~EEhelFLeaLk~yG-rdWkkIA~--~------------VgTRT~~QcRSHaQKYf~kl 127 (322)
....||.+||..||.|+.+|| ++|.+|-. - ..+++...+..|+...+.-+
T Consensus 133 ~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~l 197 (211)
T 4b4c_A 133 FDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLL 197 (211)
T ss_dssp SSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHHH
Confidence 355799999999999999999 79999974 1 12456778888885444334
No 57
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=93.72 E-value=0.069 Score=52.30 Aligned_cols=48 Identities=21% Similarity=0.461 Sum_probs=43.0
Q ss_pred CCCCHHHHHHHHHHHHHcCc-hHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Q 020749 80 ESWTEQEHDKFLEALQLFDR-DWKKIEAFIG-SKTVIQIRSHAQKYFLKV 127 (322)
Q Consensus 80 ~~WT~EEhelFLeaLk~yGr-dWkkIA~~Vg-TRT~~QcRSHaQKYf~kl 127 (322)
..||..+=..|+.|+.+||+ +-..||..|+ +||..+|+.+++-|+.+.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~Y~~vFw~Ry 173 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRAYAKAFWSNI 173 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHHHHHHHHHTC
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHHHHHHHHHhh
Confidence 58999999999999999998 7999999998 999999999887766553
No 58
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=93.29 E-value=0.14 Score=47.63 Aligned_cols=27 Identities=19% Similarity=0.183 Sum_probs=24.7
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020749 100 DWKKIEAFIGSKTVIQIRSHAQKYFLK 126 (322)
Q Consensus 100 dWkkIA~~VgTRT~~QcRSHaQKYf~k 126 (322)
.|++||++++.||...+|.|+.|++.+
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKfl~~ 199 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKFLLA 199 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHTHHH
T ss_pred HHHHHHHHCCCCChhhHHHHHHHHHhh
Confidence 799999999999999999999987655
No 59
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=90.45 E-value=0.16 Score=47.57 Aligned_cols=27 Identities=26% Similarity=0.693 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHHcC-chHHHHHH
Q 020749 80 ESWTEQEHDKFLEALQLFD-RDWKKIEA 106 (322)
Q Consensus 80 ~~WT~EEhelFLeaLk~yG-rdWkkIA~ 106 (322)
-.|+.+||..||.||.+|| +.|.+|..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 4699999999999999999 79999963
No 60
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=89.93 E-value=0.35 Score=38.55 Aligned_cols=55 Identities=25% Similarity=0.524 Sum_probs=36.7
Q ss_pred HHHHHHHHcC--------chHHHHHHHhCCC-----CHHHHHHHHHHHHHH---HhhcCCCCCCCCCCCCC
Q 020749 89 KFLEALQLFD--------RDWKKIEAFIGSK-----TVIQIRSHAQKYFLK---VQKNGTSEHVPPPRPKR 143 (322)
Q Consensus 89 lFLeaLk~yG--------rdWkkIA~~VgTR-----T~~QcRSHaQKYf~k---l~k~g~~e~iP~prpkR 143 (322)
+|...+.+.| +.|++|++.+|-- ...++|.|+++|+.. ..+....+.+|+..||+
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~yE~~~~~~~~~~~p~~~~~~ 107 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILPYERFIKGEEDKPLPPIKPRK 107 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTTTHHHHHHHTSSSSCTTCSCC
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCC
Confidence 3444566777 2799999888731 247899999998433 33344456788777664
No 61
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=88.09 E-value=0.76 Score=36.39 Aligned_cols=50 Identities=26% Similarity=0.417 Sum_probs=37.0
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCc--hHH--------------HHHHHh-----CCCCHHHHHHHHHHHHHH
Q 020749 77 KSRESWTEQEHDKFLEALQLFDR--DWK--------------KIEAFI-----GSKTVIQIRSHAQKYFLK 126 (322)
Q Consensus 77 k~r~~WT~EEhelFLeaLk~yGr--dWk--------------kIA~~V-----gTRT~~QcRSHaQKYf~k 126 (322)
+..+.|.++=+..|++||..|-. .|+ -|+.|| ..||..||-||-|-.-..
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~ 74 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARR 74 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHH
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHH
Confidence 45789999999999999999851 111 145544 369999999999865444
No 62
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=87.18 E-value=1.8 Score=42.39 Aligned_cols=55 Identities=13% Similarity=0.280 Sum_probs=45.9
Q ss_pred CCCCCCHHHHHHHHHHHHHcC----chHHHHHH------------HhCCCCHHHHHHHHHHHHHHHhhcCC
Q 020749 78 SRESWTEQEHDKFLEALQLFD----RDWKKIEA------------FIGSKTVIQIRSHAQKYFLKVQKNGT 132 (322)
Q Consensus 78 ~r~~WT~EEhelFLeaLk~yG----rdWkkIA~------------~VgTRT~~QcRSHaQKYf~kl~k~g~ 132 (322)
++..||+|||..||-.|.+|| +.|.+|-. |+.+||+.+|..|+.-...-+.|...
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~IeKE~~ 297 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQCLEKEFN 297 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHHHHTTTT
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHHHHHhc
Confidence 356899999999999999999 37999942 27799999999999888777777543
No 63
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=83.36 E-value=2.3 Score=39.76 Aligned_cols=45 Identities=16% Similarity=0.099 Sum_probs=36.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcC---chHHHHHH--HhCCCCHHHHHHHHHH
Q 020749 78 SRESWTEQEHDKFLEALQLFD---RDWKKIEA--FIGSKTVIQIRSHAQK 122 (322)
Q Consensus 78 ~r~~WT~EEhelFLeaLk~yG---rdWkkIA~--~VgTRT~~QcRSHaQK 122 (322)
.++.||+.|-.+|+.++.+|| .+|..|++ -+..|+...++.-++-
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~ 51 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDE 51 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence 457899999999999999999 48999974 4667888777765543
No 64
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=71.54 E-value=4.6 Score=33.04 Aligned_cols=30 Identities=10% Similarity=0.397 Sum_probs=23.4
Q ss_pred hHHHHHHHhCCCC----HHHHHHHHHHHHHHHhh
Q 020749 100 DWKKIEAFIGSKT----VIQIRSHAQKYFLKVQK 129 (322)
Q Consensus 100 dWkkIA~~VgTRT----~~QcRSHaQKYf~kl~k 129 (322)
.|++|++.+|--+ ..++|.|+++|+..-.+
T Consensus 74 ~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~ 107 (125)
T 2cxy_A 74 KWRELATNLNVGTSSSAASSLKKQYIQYLFAFEC 107 (125)
T ss_dssp CHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHH
T ss_pred cHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 7999999887543 57999999999666443
No 65
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=68.94 E-value=4.9 Score=32.48 Aligned_cols=28 Identities=14% Similarity=0.216 Sum_probs=23.9
Q ss_pred hHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 020749 100 DWKKIEAFIGSKTVIQIRSHAQKYFLKV 127 (322)
Q Consensus 100 dWkkIA~~VgTRT~~QcRSHaQKYf~kl 127 (322)
.|+.|++.+|-....++|.|+.+|+..-
T Consensus 72 ~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 72 QWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp CHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred cHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 7999999988766889999999986554
No 66
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=63.81 E-value=16 Score=28.76 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=29.5
Q ss_pred HHHHHHHHHHcC--------chHHHHHHHhCCCC----HHHHHHHHHHHHHHHhh
Q 020749 87 HDKFLEALQLFD--------RDWKKIEAFIGSKT----VIQIRSHAQKYFLKVQK 129 (322)
Q Consensus 87 helFLeaLk~yG--------rdWkkIA~~VgTRT----~~QcRSHaQKYf~kl~k 129 (322)
..+|. .+.+.| +.|+.|++.+|--. ..++|.|+.+|+..-..
T Consensus 47 ~~Ly~-~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~yE~ 100 (107)
T 2lm1_A 47 YTLHR-IVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPFEV 100 (107)
T ss_dssp HHHHH-HHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 34444 455566 37999999887533 57999999999776543
No 67
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=62.50 E-value=12 Score=30.85 Aligned_cols=40 Identities=15% Similarity=0.270 Sum_probs=31.5
Q ss_pred HHHHHHHcC--------chHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 020749 90 FLEALQLFD--------RDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (322)
Q Consensus 90 FLeaLk~yG--------rdWkkIA~~VgTRT~~QcRSHaQKYf~kl~k 129 (322)
|...|.+.| +.|+.|++-+|-....++|.|+.+|+..-.+
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE~ 100 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYER 100 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHHH
Confidence 444556666 3799999998876699999999999887655
No 68
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=60.31 E-value=12 Score=30.16 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=28.8
Q ss_pred HHHHHHHHcC--------chHHHHHHHhCCCC----HHHHHHHHHHHHHHHh
Q 020749 89 KFLEALQLFD--------RDWKKIEAFIGSKT----VIQIRSHAQKYFLKVQ 128 (322)
Q Consensus 89 lFLeaLk~yG--------rdWkkIA~~VgTRT----~~QcRSHaQKYf~kl~ 128 (322)
+|...+.+.| +.|+.|++.+|-.. ..++|.|+++|+..-.
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE 95 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYE 95 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 3444566666 37999999887533 6799999999866543
No 69
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=58.46 E-value=18 Score=25.65 Aligned_cols=27 Identities=33% Similarity=0.303 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHcCchHHHHHHHhCC
Q 020749 84 EQEHDKFLEALQLFDRDWKKIEAFIGS 110 (322)
Q Consensus 84 ~EEhelFLeaLk~yGrdWkkIA~~VgT 110 (322)
.-|.+.+.++|+++|+++.+.|+.+|-
T Consensus 18 ~~E~~~i~~aL~~~~gn~~~aA~~LGi 44 (63)
T 3e7l_A 18 EFEKIFIEEKLREYDYDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCc
Confidence 357788899999999999999999985
No 70
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=57.05 E-value=31 Score=23.56 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 020749 80 ESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (322)
Q Consensus 80 ~~WT~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRSHaQKYf~kl~k 129 (322)
..+++.|.+.|. ..-..|..++.||+.+|- +...|+.+..+-..++++
T Consensus 14 ~~L~~~~r~il~-l~~~~g~s~~eIA~~lgi-s~~tv~~~~~ra~~~l~~ 61 (70)
T 2o8x_A 14 ADLTTDQREALL-LTQLLGLSYADAAAVCGC-PVGTIRSRVARARDALLA 61 (70)
T ss_dssp TSSCHHHHHHHH-HHHTSCCCHHHHHHHHTS-CHHHHHHHHHHHHHHHHC
T ss_pred HhCCHHHHHHHH-HHHHcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHHH
Confidence 457766665554 333567899999999986 788888877776666654
No 71
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=56.42 E-value=19 Score=29.34 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=28.5
Q ss_pred HHHHHHHcC--------chHHHHHHHhCCCC----HHHHHHHHHHHHHHHhh
Q 020749 90 FLEALQLFD--------RDWKKIEAFIGSKT----VIQIRSHAQKYFLKVQK 129 (322)
Q Consensus 90 FLeaLk~yG--------rdWkkIA~~VgTRT----~~QcRSHaQKYf~kl~k 129 (322)
|...+.+.| +.|+.|++.+|-.. ..++|.|+++|+..-..
T Consensus 47 Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~ 98 (122)
T 2eqy_A 47 LNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNL 98 (122)
T ss_dssp HHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 334556666 37999999887532 46999999999766444
No 72
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=54.41 E-value=9.5 Score=29.45 Aligned_cols=29 Identities=17% Similarity=0.406 Sum_probs=22.2
Q ss_pred chHHHHHHHhCCCC----HHHHHHHHHHHHHHH
Q 020749 99 RDWKKIEAFIGSKT----VIQIRSHAQKYFLKV 127 (322)
Q Consensus 99 rdWkkIA~~VgTRT----~~QcRSHaQKYf~kl 127 (322)
+.|++|++.+|--. ..++|.|+++|+..-
T Consensus 58 ~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~y 90 (96)
T 2jxj_A 58 KKWSKVGSRLGYLPGKGTGSLLKSHYERILYPY 90 (96)
T ss_dssp TTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHHH
T ss_pred CcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHHH
Confidence 37999998887422 678999999887654
No 73
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=53.54 E-value=44 Score=22.97 Aligned_cols=49 Identities=22% Similarity=0.236 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 020749 78 SRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (322)
Q Consensus 78 ~r~~WT~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRSHaQKYf~kl~k 129 (322)
....+|+.|.+.|.. + ..|...+.||+.+|- +..-|+.|..+-+.++..
T Consensus 8 ~~~~L~~~e~~il~~-~-~~g~s~~eIA~~l~i-s~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 8 SKPLLTKREREVFEL-L-VQDKTTKEIASELFI-SEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCCHHHHHHHHH-H-TTTCCHHHHHHHHTS-CHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHH-H-HcCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHCC
Confidence 346788888887766 4 667899999999886 788899888777777643
No 74
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=49.88 E-value=59 Score=24.42 Aligned_cols=49 Identities=14% Similarity=0.027 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhhc
Q 020749 79 RESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQKN 130 (322)
Q Consensus 79 r~~WT~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRSHaQKYf~kl~k~ 130 (322)
-...|+.|.+.|.. + ..|..-+.||+.+|- +..-|+.|..+-+.++...
T Consensus 25 l~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 25 LSGLTDQERTLLGL-L-SEGLTNKQIADRMFL-AEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp --CCCHHHHHHHHH-H-HTTCCHHHHHHHHTC-CHHHHHHHHHHHHHHHTCC
T ss_pred HhcCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHcCC
Confidence 35688888887776 4 778899999999986 8899999988888887554
No 75
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=47.06 E-value=33 Score=27.95 Aligned_cols=40 Identities=13% Similarity=0.220 Sum_probs=28.0
Q ss_pred HHHHHHHcC--------chHHHHHHHhCCC-----CHHHHHHHHHHHHHHHhh
Q 020749 90 FLEALQLFD--------RDWKKIEAFIGSK-----TVIQIRSHAQKYFLKVQK 129 (322)
Q Consensus 90 FLeaLk~yG--------rdWkkIA~~VgTR-----T~~QcRSHaQKYf~kl~k 129 (322)
|...|...| +.|+.|++.+|-- ...++|.|+.+|+..-.+
T Consensus 57 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~ 109 (128)
T 1c20_A 57 LYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYEC 109 (128)
T ss_dssp HHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 334455666 3799999988732 268999999999766443
No 76
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=46.58 E-value=30 Score=26.19 Aligned_cols=38 Identities=13% Similarity=0.166 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHH
Q 020749 84 EQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQK 122 (322)
Q Consensus 84 ~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRSHaQK 122 (322)
.-|.+.+.++|+++|++..+.|+.+|- +...+..+.++
T Consensus 50 ~~E~~~i~~aL~~~~gn~~~aA~~LGI-sr~tL~rklkk 87 (91)
T 1ntc_A 50 ELERTLLTTALRHTQGHKQEAARLLGW-GAATLTAKLKE 87 (91)
T ss_dssp HHHHHHHHHHHHHTTTCTTHHHHHTTC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHCc-CHHHHHHHHHH
Confidence 457888899999999999999999985 33344333333
No 77
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=45.31 E-value=24 Score=29.61 Aligned_cols=30 Identities=17% Similarity=0.355 Sum_probs=22.7
Q ss_pred hHHHHHHHhCCC-----CHHHHHHHHHHHHHHHhh
Q 020749 100 DWKKIEAFIGSK-----TVIQIRSHAQKYFLKVQK 129 (322)
Q Consensus 100 dWkkIA~~VgTR-----T~~QcRSHaQKYf~kl~k 129 (322)
.|++|++.+|-- ...++|.++++|+..-..
T Consensus 87 ~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~ 121 (145)
T 2kk0_A 87 LWREITKGLNLPTSITSAAFTLRTQYMKYLYPYEC 121 (145)
T ss_dssp CHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHH
T ss_pred cHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 799999888742 267999999998655433
No 78
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=45.27 E-value=41 Score=25.43 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=35.7
Q ss_pred HHHHHHHHHHc-----Cc--hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 020749 87 HDKFLEALQLF-----DR--DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTSEHVPP 138 (322)
Q Consensus 87 helFLeaLk~y-----Gr--dWkkIA~~VgTRT~~QcRSHaQKYf~kl~k~g~~e~iP~ 138 (322)
.+..|+.|+.+ |. .-..|++.+|- +...||. |+..+.+.|.....|.
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgv-S~~TVrr----~L~~Le~kG~I~R~~g 59 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGL-SIYQVRL----YLEQLHDVGVLEKVNA 59 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTC-CHHHHHH----HHHHHHHTTSEEEESC
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCC-CHHHHHH----HHHHHHHCCcEEecCC
Confidence 45677888777 54 78999999998 7777775 6778888887665553
No 79
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=44.57 E-value=39 Score=23.71 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=33.8
Q ss_pred CCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 020749 81 SWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 128 (322)
Q Consensus 81 ~WT~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRSHaQKYf~kl~ 128 (322)
.+|+.|.+.|.. + ..|...+.||+.++- +...|+.|..+-+.+++
T Consensus 16 ~L~~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~~~r~~~kl~ 60 (79)
T 1x3u_A 16 TLSERERQVLSA-V-VAGLPNKSIAYDLDI-SPRTVEVHRANVMAKMK 60 (79)
T ss_dssp HHCHHHHHHHHH-H-TTTCCHHHHHHHTTS-CHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHc
Confidence 467777766655 4 567899999999875 78888888777666654
No 80
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=44.16 E-value=23 Score=29.10 Aligned_cols=43 Identities=19% Similarity=0.211 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 020749 85 QEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (322)
Q Consensus 85 EEhelFLeaLk~yGr-dWkkIA~~VgTRT~~QcRSHaQKYf~kl~k~g~ 132 (322)
+-+.++|+.|++-|+ .|+.||+.+|- +...|+.|.+ ++.+.|.
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg~-s~~tv~~rl~----~L~~~g~ 46 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVGL-STTPCWRRIQ----KMEEDGV 46 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHTC-CHHHHHHHHH----HHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCc-CHHHHHHHHH----HHHHCCC
Confidence 567889999999887 99999999986 8888988754 4666665
No 81
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=43.88 E-value=56 Score=25.07 Aligned_cols=33 Identities=12% Similarity=0.241 Sum_probs=23.4
Q ss_pred HcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 020749 96 LFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (322)
Q Consensus 96 ~yGrdWkkIA~~VgTRT~~QcRSHaQKYf~kl~k 129 (322)
..|...+.||+.+|- +...|+.+..+-..++++
T Consensus 122 ~~g~s~~EIA~~lgi-s~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 122 IRGYSYREIATILSK-NLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp TTTCCHHHHHHHHTC-CHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHH
Confidence 346789999999885 677777776665555543
No 82
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=42.05 E-value=55 Score=23.95 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=37.5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 020749 78 SRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 128 (322)
Q Consensus 78 ~r~~WT~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRSHaQKYf~kl~ 128 (322)
.-...|+.|.+.|.. + ..|...+.||+.++- +...|+.|..+-+.++.
T Consensus 18 ~~~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r~~~kL~ 65 (82)
T 1je8_A 18 DVNQLTPRERDILKL-I-AQGLPNKMIARRLDI-TESTVKVHVKHMLKKMK 65 (82)
T ss_dssp CGGGSCHHHHHHHHH-H-TTTCCHHHHHHHHTS-CHHHHHHHHHHHHHHTT
T ss_pred HHccCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHc
Confidence 345688888887776 4 678899999999885 78889988877766654
No 83
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=41.56 E-value=23 Score=29.11 Aligned_cols=31 Identities=16% Similarity=0.489 Sum_probs=23.5
Q ss_pred chHHHHHHHhCC-C----CHHHHHHHHHHHHHHHhh
Q 020749 99 RDWKKIEAFIGS-K----TVIQIRSHAQKYFLKVQK 129 (322)
Q Consensus 99 rdWkkIA~~VgT-R----T~~QcRSHaQKYf~kl~k 129 (322)
+.|+.|++-+|- + ...++|.|+.||+..-..
T Consensus 64 k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~YE~ 99 (121)
T 2rq5_A 64 KKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSYDS 99 (121)
T ss_dssp TCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHHHH
T ss_pred CcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHHHC
Confidence 379999988863 2 257899999999877543
No 84
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=39.24 E-value=80 Score=23.22 Aligned_cols=33 Identities=9% Similarity=-0.015 Sum_probs=23.3
Q ss_pred HcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 020749 96 LFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (322)
Q Consensus 96 ~yGrdWkkIA~~VgTRT~~QcRSHaQKYf~kl~k 129 (322)
..|...+.||+.+|- +...|+.|..+-+.++++
T Consensus 51 ~~g~s~~eIA~~lgi-s~~tV~~~l~ra~~~Lr~ 83 (92)
T 3hug_A 51 YRGWSTAQIATDLGI-AEGTVKSRLHYAVRALRL 83 (92)
T ss_dssp TSCCCHHHHHHHHTS-CHHHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHHH
Confidence 346788999998885 677777776666666544
No 85
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=39.16 E-value=67 Score=24.26 Aligned_cols=47 Identities=15% Similarity=0.032 Sum_probs=35.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 020749 78 SRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKV 127 (322)
Q Consensus 78 ~r~~WT~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRSHaQKYf~kl 127 (322)
....-|+.|.+.|.... .|..-+.||+.++- +..-|+.|..+-+.|+
T Consensus 26 ~~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L~i-S~~TV~~~~~~i~~Kl 72 (90)
T 3ulq_B 26 EQDVLTPRECLILQEVE--KGFTNQEIADALHL-SKRSIEYSLTSIFNKL 72 (90)
T ss_dssp ---CCCHHHHHHHHHHH--TTCCHHHHHHHHTC-CHHHHHHHHHHHHHHT
T ss_pred cccCCCHHHHHHHHHHH--cCCCHHHHHHHHCc-CHHHHHHHHHHHHHHH
Confidence 34567888887776544 78899999999885 8899999988877775
No 86
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=39.00 E-value=35 Score=26.12 Aligned_cols=28 Identities=7% Similarity=0.147 Sum_probs=24.1
Q ss_pred CHHHHHHHHHHHHHcCchHHHHHHHhCC
Q 020749 83 TEQEHDKFLEALQLFDRDWKKIEAFIGS 110 (322)
Q Consensus 83 T~EEhelFLeaLk~yGrdWkkIA~~VgT 110 (322)
.+-|.+.+.++|++++++..+.|+.+|-
T Consensus 39 ~~~Er~~I~~aL~~~~GN~s~AA~~LGI 66 (81)
T 1umq_A 39 DRVRWEHIQRIYEMCDRNVSETARRLNM 66 (81)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 3457788889999999999999999985
No 87
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=37.58 E-value=95 Score=21.77 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHHHHH---cCchHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 020749 81 SWTEQEHDKFLEALQL---FDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 128 (322)
Q Consensus 81 ~WT~EEhelFLeaLk~---yGrdWkkIA~~VgTRT~~QcRSHaQKYf~kl~ 128 (322)
.-++.|.+.|..-+-. .|..|+.||+.+|- +...|+.|..+-+.+++
T Consensus 10 ~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~i-s~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGREHTLEEVGAYFGV-TRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTC-CHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHH
Confidence 4566666666554422 46799999999885 77777777766677775
No 88
>2lc3_A E3 ubiquitin-protein ligase hectd1; helical bundle, structural genomics, northeast structural GE consortium, NESG, structural genomics consortium; NMR {Homo sapiens}
Probab=30.52 E-value=45 Score=26.65 Aligned_cols=56 Identities=16% Similarity=0.298 Sum_probs=40.6
Q ss_pred cCCCCCCHHH-----------HHHHHHHHHHcC-----chHHH---HHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 020749 77 KSRESWTEQE-----------HDKFLEALQLFD-----RDWKK---IEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (322)
Q Consensus 77 k~r~~WT~EE-----------helFLeaLk~yG-----rdWkk---IA~~VgTRT~~QcRSHaQKYf~kl~k~g~ 132 (322)
-..+.||.|+ ..-++.-|+.+| +.|+- |.....++...|...-+.++|..-.+.|+
T Consensus 11 ~~~~~Ws~Eq~~~~L~Sd~lpKkdiIkfLq~na~~~FL~e~KLlGniKNVaKtanK~qLiaAY~~lfE~~~~~g~ 85 (88)
T 2lc3_A 11 GKMGCWSIEHVEQYLGTDELPKNDLITYLQKNADAAFLRHWKLTGTNKSIRKNRNCSQLIAAYKDFCEHGTKSGL 85 (88)
T ss_dssp CCCCCCCHHHHHHHBTSSSBCHHHHHHHHHHHSCHHHHHHTTCSSCHHHHHHHSCHHHHHHHHHHHHHHTCTTTS
T ss_pred CccCcchHHHHhcccccccccHHHHHHHHHHcchHHHHHHHHHhccHHHHHhcCcHHHHHHHHHHHHhccccccc
Confidence 4578999999 345666777777 36765 55566688999999888888877655554
No 89
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=30.14 E-value=76 Score=24.81 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHcCchHHHHHHHhCC
Q 020749 84 EQEHDKFLEALQLFDRDWKKIEAFIGS 110 (322)
Q Consensus 84 ~EEhelFLeaLk~yGrdWkkIA~~VgT 110 (322)
.-|...+.++|+++|++..+.|+.+|-
T Consensus 57 ~~Er~~I~~aL~~~~gn~~~AA~~LGI 83 (98)
T 1eto_A 57 EVEQPLLDMVMQYTLGNQTRAALMMGI 83 (98)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHhCC
Confidence 457788889999999999999999985
No 90
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=29.77 E-value=1.3e+02 Score=23.19 Aligned_cols=47 Identities=11% Similarity=0.093 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 020749 79 RESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 128 (322)
Q Consensus 79 r~~WT~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRSHaQKYf~kl~ 128 (322)
...-|+.|.+.|.. + ..|...+.||+.++- +..-|+.|..+-+.++.
T Consensus 32 ~~~Lt~re~~Vl~l-~-~~G~s~~EIA~~L~i-S~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRL-F-AEGFLVTEIAKKLNR-SIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHH-H-HHTCCHHHHHHHHTS-CHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHC
Confidence 35578888887755 3 368899999999886 88899998887777763
No 91
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=29.71 E-value=1.2e+02 Score=24.03 Aligned_cols=43 Identities=16% Similarity=0.267 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 020749 85 QEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (322)
Q Consensus 85 EEhelFLeaLk~yGr-dWkkIA~~VgTRT~~QcRSHaQKYf~kl~k~g~ 132 (322)
+-+.++|+.|+..|+ .|+.||+.+|- +...|+.|. .++.+.|.
T Consensus 9 ~~d~~il~~L~~~~~~s~~ela~~lg~-s~~tv~~~l----~~L~~~G~ 52 (151)
T 2dbb_A 9 RVDMQLVKILSENSRLTYRELADILNT-TRQRIARRI----DKLKKLGI 52 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHTTS-CHHHHHHHH----HHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHH----HHHHHCCC
Confidence 456688899999886 99999999996 777787754 45556664
No 92
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=28.70 E-value=1.1e+02 Score=25.52 Aligned_cols=44 Identities=18% Similarity=0.301 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 020749 84 EQEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (322)
Q Consensus 84 ~EEhelFLeaLk~yGr-dWkkIA~~VgTRT~~QcRSHaQKYf~kl~k~g~ 132 (322)
++-+.++|+.|++.|+ .|+.||+.+|- +...|+.| ++++.+.|.
T Consensus 26 d~~d~~IL~~L~~~~~~s~~eLA~~lgl-S~~tv~~r----l~~L~~~G~ 70 (171)
T 2e1c_A 26 DEIDKKIIKILQNDGKAPLREISKITGL-AESTIHER----IRKLRESGV 70 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHHTS-CHHHHHHH----HHHHHHTTS
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHH----HHHHHHCCC
Confidence 4567789999999886 99999999985 88888876 455666665
No 93
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=28.38 E-value=1.3e+02 Score=23.96 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=22.8
Q ss_pred CchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 020749 98 DRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (322)
Q Consensus 98 GrdWkkIA~~VgTRT~~QcRSHaQKYf~kl~k 129 (322)
|...+.||+.+|- +...|++|..+-..++++
T Consensus 156 g~s~~EIA~~lgi-s~~tV~~~l~ra~~~Lr~ 186 (194)
T 1or7_A 156 GLSYEEIAAIMDC-PVGTVRSRIFRAREAIDN 186 (194)
T ss_dssp CCCHHHHHHHTTS-CHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHH
Confidence 5688999998885 677777776666666654
No 94
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=28.12 E-value=88 Score=21.65 Aligned_cols=46 Identities=17% Similarity=0.120 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHH---HcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 020749 83 TEQEHDKFLEALQ---LFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (322)
Q Consensus 83 T~EEhelFLeaLk---~yGrdWkkIA~~VgTRT~~QcRSHaQKYf~kl~k 129 (322)
++.|.+.|...+- ..|..++.||+.+|- +...|+.|..+-+.++++
T Consensus 7 ~~~er~il~l~~~l~~~~g~s~~eIA~~lgi-s~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 7 TAREAKVLRMRFGIDMNTDYTLEEVGKQFDV-TRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CHHHHHHHHHHTTTTSSSCCCHHHHHHHHTC-CHHHHHHHHHHHHHGGGS
T ss_pred CHHHHHHHHHHHccCCCCCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHHH
Confidence 4555555444331 246799999999885 778888876666666543
No 95
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=27.40 E-value=86 Score=23.06 Aligned_cols=49 Identities=18% Similarity=0.188 Sum_probs=37.8
Q ss_pred CCCCCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 020749 78 SRESWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (322)
Q Consensus 78 ~r~~WT~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRSHaQKYf~kl~k 129 (322)
.-...|+.|.+.|.. + ..|..-+.||+.+|- +..-|+.|..+-+.++..
T Consensus 26 ~l~~Lt~~e~~vl~l-~-~~g~s~~eIA~~l~i-s~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 26 LYEMLTEREMEILLL-I-AKGYSNQEIASASHI-TIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp TGGGCCSHHHHHHHH-H-HTTCCTTHHHHHHTC-CHHHHHHHHHHHHHHTTC
T ss_pred HHhcCCHHHHHHHHH-H-HcCCCHHHHHHHHCc-CHHHHHHHHHHHHHHHCC
Confidence 345678888888766 4 678899999999876 888899988777766643
No 96
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=26.54 E-value=1.4e+02 Score=23.65 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 020749 85 QEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (322)
Q Consensus 85 EEhelFLeaLk~yGr-dWkkIA~~VgTRT~~QcRSHaQKYf~kl~k~g~ 132 (322)
+-+.++|+.|+..|+ .|+.||+.+|- +...|+.|. .++.+.|.
T Consensus 7 ~~~~~il~~L~~~~~~s~~ela~~lg~-s~~tv~~~l----~~L~~~G~ 50 (151)
T 2cyy_A 7 EIDKKIIKILQNDGKAPLREISKITGL-AESTIHERI----RKLRESGV 50 (151)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHCS-CHHHHHHHH----HHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHH----HHHHHCCC
Confidence 456688999999886 99999999986 778888764 44566665
No 97
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=25.63 E-value=1.5e+02 Score=21.61 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHH---cCchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 020749 82 WTEQEHDKFLEALQL---FDRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (322)
Q Consensus 82 WT~EEhelFLeaLk~---yGrdWkkIA~~VgTRT~~QcRSHaQKYf~kl~k 129 (322)
=++.|.+.|..-+-. .|..++.||+.+|- +..-|+.|-.+-+.++++
T Consensus 19 L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgi-s~~tV~~~~~ra~~kLr~ 68 (87)
T 1tty_A 19 LSPREAMVLRMRYGLLDGKPKTLEEVGQYFNV-TRERIRQIEVKALRKLRH 68 (87)
T ss_dssp SCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTC-CHHHHHHHHHHHHHHHBT
T ss_pred CCHHHHHHHHHHHccCCCCCCCHHHHHHHHCC-CHHHHHHHHHHHHHHHHH
Confidence 345555555443321 46799999999884 677777776666666643
No 98
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=24.72 E-value=98 Score=22.85 Aligned_cols=47 Identities=13% Similarity=0.263 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHcC---c-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCC
Q 020749 83 TEQEHDKFLEALQLFD---R-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTSE 134 (322)
Q Consensus 83 T~EEhelFLeaLk~yG---r-dWkkIA~~VgTRT~~QcRSHaQKYf~kl~k~g~~e 134 (322)
+.+-+.++|+.|+.-| + .-+.||+.+| -+...|+. ++.++.+.|.-+
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lg-vs~~tV~~----~L~~L~~~G~I~ 62 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKLG-TPKKEINR----VLYSLAKKGKLQ 62 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHHC-CCHHHHHH----HHHHHHHHTSEE
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHHC-cCHHHHHH----HHHHHHHCCCEE
Confidence 4566788999999998 4 7899999998 34455554 566777776543
No 99
>3fdq_A Motility gene repressor MOGR; protein-DNA complex, helix-turn-helix, minor groove binding, cytoplasm; 1.75A {Listeria monocytogenes}
Probab=24.57 E-value=2.2e+02 Score=24.85 Aligned_cols=62 Identities=23% Similarity=0.324 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHH---HHcCchHHHHHHHhC-------CCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCC
Q 020749 79 RESWTEQEHDKFLEAL---QLFDRDWKKIEAFIG-------SKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKR 143 (322)
Q Consensus 79 r~~WT~EEhelFLeaL---k~yGrdWkkIA~~Vg-------TRT~~QcRSHaQKYf~kl~k~g~~e~iP~prpkR 143 (322)
.-.|=.-|-++|.+.+ +++|-+--.|+++|. -||+.|..+ -|+.-.+..-..|+|+..+|-|
T Consensus 69 ~i~WLKsELELLya~YQf~q~h~lni~~iSk~iSkn~L~lFPKTeSQLQN---TYYKLKk~ei~fEnI~K~KPGR 140 (170)
T 3fdq_A 69 NISWLKIELELLSACYQIAILEDMKVLDISEMLSLNDLRIFPKTPSQLQN---TYYKLKKELIQVEDIPKNKPGR 140 (170)
T ss_dssp SEEECHHHHHHHHHHHHHHHHTTCCHHHHHHHHSTTTTCSSSSCHHHHHH---HHHHHHTTSSCSSCEECCCCSC
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCCchhhHHHHhhHhhhccCCCCHHHHHH---HHHHHHhhhcchhhccccCCCc
Confidence 4479999999988866 456767788888875 489999887 3444333344557776644333
No 100
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=23.97 E-value=1.4e+02 Score=22.43 Aligned_cols=48 Identities=13% Similarity=0.272 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcC---c-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCCC
Q 020749 84 EQEHDKFLEALQLFD---R-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGTSEHV 136 (322)
Q Consensus 84 ~EEhelFLeaLk~yG---r-dWkkIA~~VgTRT~~QcRSHaQKYf~kl~k~g~~e~i 136 (322)
.+-++++|+.|+..| + .-..||+.+|- +...|+. ++.++.+.|.-+.+
T Consensus 9 ~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgv-sr~tV~~----~L~~Le~~G~I~~~ 60 (81)
T 1qbj_A 9 QDQEQRILKFLEELGEGKATTAHDLSGKLGT-PKKEINR----VLYSLAKKGKLQKE 60 (81)
T ss_dssp HHHHHHHHHHHHHHCTTCCBCHHHHHHHHTC-CHHHHHH----HHHHHHHTTSEEEE
T ss_pred hHHHHHHHHHHHHcCCCCCcCHHHHHHHHCc-CHHHHHH----HHHHHHHCCCEEec
Confidence 455778999999999 4 78899999983 4445554 57778888765433
No 101
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=22.80 E-value=1.8e+02 Score=23.73 Aligned_cols=31 Identities=10% Similarity=0.221 Sum_probs=21.2
Q ss_pred CchHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 020749 98 DRDWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (322)
Q Consensus 98 GrdWkkIA~~VgTRT~~QcRSHaQKYf~kl~k 129 (322)
|..++.||+.+|- +...|+.+..+-..++++
T Consensus 203 g~s~~EIA~~lgi-s~~~V~~~~~ra~~~Lr~ 233 (239)
T 1rp3_A 203 ELPAKEVAKILET-SVSRVSQLKAKALERLRE 233 (239)
T ss_dssp CCCHHHHHHHTTS-CHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCC-CHHHHHHHHHHHHHHHHH
Confidence 5689999999885 566666665555555543
No 102
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=22.20 E-value=2.2e+02 Score=20.40 Aligned_cols=52 Identities=13% Similarity=0.082 Sum_probs=33.4
Q ss_pred cCCCCCCHHHHHHHHHHHHHcC--c--hHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Q 020749 77 KSRESWTEQEHDKFLEALQLFD--R--DWKKIEAFIGSKTVIQIRSHAQKYFLKVQK 129 (322)
Q Consensus 77 k~r~~WT~EEhelFLeaLk~yG--r--dWkkIA~~VgTRT~~QcRSHaQKYf~kl~k 129 (322)
+.+..+|.+.-+.|...++.-. . .=..||+.++- +..||+.=+|+-..+.++
T Consensus 19 r~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l-~~~qV~~WFqNrR~k~kk 74 (80)
T 2da3_A 19 RLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGL-KKRVVQVWFQNTRARERK 74 (80)
T ss_dssp TCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCc-CHHHhHHHhHHHHHhHhh
Confidence 3556777777666666665433 1 33457887774 899999866665555544
No 103
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=22.18 E-value=1.5e+02 Score=23.27 Aligned_cols=28 Identities=18% Similarity=0.210 Sum_probs=22.5
Q ss_pred CHHHHHHHHHHHHHcCchHHHHHHHhCC
Q 020749 83 TEQEHDKFLEALQLFDRDWKKIEAFIGS 110 (322)
Q Consensus 83 T~EEhelFLeaLk~yGrdWkkIA~~VgT 110 (322)
++.-+..|...-+..|.+|+++|..+|-
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~Lg~ 41 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELARELQF 41 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHTTC
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHcCC
Confidence 5666667777778889999999999884
No 104
>1ngr_A P75 low affinity neurotrophin receptor; intracellular domain, death domain; NMR {Rattus norvegicus} SCOP: a.77.1.2
Probab=21.24 E-value=35 Score=26.09 Aligned_cols=29 Identities=24% Similarity=0.499 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHH
Q 020749 84 EQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRS 118 (322)
Q Consensus 84 ~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRS 118 (322)
.+|-.++|+ |+||+..|+.+|- +..+|+.
T Consensus 12 r~~l~~lL~-----g~dW~~LA~~Lg~-~~~~I~~ 40 (85)
T 1ngr_A 12 REEVEKLLN-----GDTWRHLAGELGY-QPEHIDS 40 (85)
T ss_dssp THHHHHHSC-----TTHHHHHHHHTTC-CHHHHHH
T ss_pred HHHHHHHhC-----cCCHHHHHHHcCC-CHHHHHH
Confidence 355556666 9999999999987 4555554
No 105
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=21.06 E-value=2.6e+02 Score=20.72 Aligned_cols=43 Identities=9% Similarity=0.145 Sum_probs=30.1
Q ss_pred cCCCCCCHHHHHHHHHHHHH------cCc--hHHHHHHHhCCCCHHHHHHHH
Q 020749 77 KSRESWTEQEHDKFLEALQL------FDR--DWKKIEAFIGSKTVIQIRSHA 120 (322)
Q Consensus 77 k~r~~WT~EEhelFLeaLk~------yGr--dWkkIA~~VgTRT~~QcRSHa 120 (322)
+.+..+|.+.-+.|....+. |.. .=..||+.++- +..||+.=+
T Consensus 19 R~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL-~~~~VkvWF 69 (80)
T 1wh5_A 19 RHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGV-PRQVLKVWL 69 (80)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCC-CHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCC-CcccccCCc
Confidence 35678999988888888877 332 33457877764 788888733
No 106
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=20.62 E-value=2.2e+02 Score=22.51 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHcCc-hHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCC
Q 020749 85 QEHDKFLEALQLFDR-DWKKIEAFIGSKTVIQIRSHAQKYFLKVQKNGT 132 (322)
Q Consensus 85 EEhelFLeaLk~yGr-dWkkIA~~VgTRT~~QcRSHaQKYf~kl~k~g~ 132 (322)
+-+.++|+.|+..|+ .++.||+.+|- +...|+.|. .++.+.|.
T Consensus 8 ~~d~~il~~L~~~~~~s~~ela~~lg~-s~~tv~~~l----~~L~~~G~ 51 (152)
T 2cg4_A 8 NLDRGILEALMGNARTAYAELAKQFGV-SPETIHVRV----EKMKQAGI 51 (152)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHTS-CHHHHHHHH----HHHHHHTS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHH----HHHHHcCC
Confidence 446788999999886 99999999985 778888764 44555554
No 107
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=20.55 E-value=1.5e+02 Score=17.87 Aligned_cols=37 Identities=14% Similarity=0.133 Sum_probs=24.9
Q ss_pred CCCHHHHHHHHHHHHHcCchHHHHHHHhCCCCHHHHHHH
Q 020749 81 SWTEQEHDKFLEALQLFDRDWKKIEAFIGSKTVIQIRSH 119 (322)
Q Consensus 81 ~WT~EEhelFLeaLk~yGrdWkkIA~~VgTRT~~QcRSH 119 (322)
.-+.++...++..+ .-|...+.||+.+|- +..-|+.+
T Consensus 5 ~l~~~~~~~i~~~~-~~g~s~~~IA~~lgi-s~~Tv~~~ 41 (51)
T 1tc3_C 5 ALSDTERAQLDVMK-LLNVSLHEMSRKISR-SRHCIRVY 41 (51)
T ss_dssp CCCHHHHHHHHHHH-HTTCCHHHHHHHHTC-CHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHHCc-CHHHHHHH
Confidence 34667776666655 457789999999884 55555543
No 108
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=20.43 E-value=56 Score=27.10 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=22.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCchHHH
Q 020749 79 RESWTEQEHDKFLEALQLFDRDWKK 103 (322)
Q Consensus 79 r~~WT~EEhelFLeaLk~yGrdWkk 103 (322)
...|++||.++++++...+|..|.+
T Consensus 79 g~~~p~e~~~rv~~~h~~~gn~~~~ 103 (121)
T 2juh_A 79 GEPVPQDLLDRVLAAHAYWSQQQGK 103 (121)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHHHccchhc
Confidence 3499999999999999999998876
No 109
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.28 E-value=2.5e+02 Score=20.36 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=35.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHcCc----hHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Q 020749 77 KSRESWTEQEHDKFLEALQLFDR----DWKKIEAFIGSKTVIQIRSHAQKYFLKVQ 128 (322)
Q Consensus 77 k~r~~WT~EEhelFLeaLk~yGr----dWkkIA~~VgTRT~~QcRSHaQKYf~kl~ 128 (322)
+.+..+|.+.-..|...++.-.. .=..||+.++- +..||+.-+|+-..+.+
T Consensus 19 r~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L-~~~qV~vWFqNRR~k~k 73 (80)
T 2dmt_A 19 RSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGL-SQLQVKTWYQNRRMKWK 73 (80)
T ss_dssp CSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCC-CHHHeeeccHHHHHHhh
Confidence 46788999888888777766442 34457887775 89999985555444443
Done!