BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>020751
MLGFFSCVSGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEV
SSVQQELSHVPRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRS
LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL
IGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLS
RTTLELPGITPSSRSGSLHPLPLEPPSPSXXXXXXXIPMDLIRLTGRIVSRPLASRSSME
LQNWGSHQGVLRFLMVLQLQKT

High Scoring Gene Products

Symbol, full name Information P value
AT1G24267 protein from Arabidopsis thaliana 1.6e-40
AT1G04960 protein from Arabidopsis thaliana 8.0e-21
AT1G27000 protein from Arabidopsis thaliana 9.7e-15
AT2G02730 protein from Arabidopsis thaliana 3.0e-12

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  020751
        (322 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:1005716745 - symbol:AT1G24267 "AT1G24267" spec...   431  1.6e-40   1
TAIR|locus:2010602 - symbol:AT1G04960 "AT1G04960" species...   245  8.0e-21   1
TAIR|locus:2205734 - symbol:AT1G27000 "AT1G27000" species...   198  9.7e-15   1
TAIR|locus:2058832 - symbol:AT2G02730 "AT2G02730" species...   179  3.0e-12   1


>TAIR|locus:1005716745 [details] [associations]
            symbol:AT1G24267 "AT1G24267" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
            "mitochondrion" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0031307 "integral to mitochondrial outer membrane"
            evidence=IDA] EMBL:CP002684 GO:GO:0031307 InterPro:IPR012458
            Pfam:PF07889 IPI:IPI00657339 RefSeq:NP_001031088.1 UniGene:At.44208
            PRIDE:F4I978 EnsemblPlants:AT1G24267.2 GeneID:839042
            KEGG:ath:AT1G24267 OMA:ISENGTH PhylomeDB:F4I978 Uniprot:F4I978
        Length = 344

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 110/251 (43%), Positives = 149/251 (59%)

Query:     9 SGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFND-LLAEVSSVQQEL 67
             +G++ SVLAKEG L  VS  V G LK+V + +KQ++P  S  K  ND L+A+V+S++ EL
Sbjct:    14 AGLVGSVLAKEGSLPDVSSFVSGALKMVFRQLKQEEPAKSASKPRNDTLMAQVNSLRHEL 73

Query:    68 SHVP--RSVIIETSSGSGTXXXXXXXXXXXXXXXXXXXWWKGWKLPDMMFATRRSLSDAC 125
             S +   R + I T++GSG                    WWKGWKLPD+MFATRRSLSDAC
Sbjct:    74 SLLSSNRPITIVTTAGSG--GKKYGYIIIIGVIGYGYVWWKGWKLPDLMFATRRSLSDAC 131

Query:   126 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 185
             NSV  Q++  Y+S+S  +++LSSKI  + R ++   EI Q T  EV  L+  ++ I D+ 
Sbjct:   132 NSVGSQIDGFYTSLSGTKKELSSKIDGMGRSLDANTEIIQDTGREVMELQRGTENIKDDV 191

Query:   186 QSVRDIVQTLESKLI-EIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLSRTTL 244
             + V D V+ L  KLI  IEG QDIT  GV  L  + RE  N R  E  +A   T +   L
Sbjct:   192 KFVFDAVENLVRKLIYRIEGNQDITLKGVGALHAQVRE--NKRIQESNKALPSTSAVPAL 249

Query:   245 ELPGITPSSRS 255
             E   +TPSSR+
Sbjct:   250 EAAPMTPSSRT 260


>TAIR|locus:2010602 [details] [associations]
            symbol:AT1G04960 "AT1G04960" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002684 EMBL:AC004809
            IPI:IPI00846737 RefSeq:NP_001077461.1 UniGene:At.23716
            STRING:A8MRN9 EnsemblPlants:AT1G04960.2 GeneID:839346
            KEGG:ath:AT1G04960 TAIR:At1g04960 HOGENOM:HOG000237587 OMA:EGKEDAN
            PhylomeDB:A8MRN9 ProtClustDB:CLSN2687679 Genevestigator:A8MRN9
            InterPro:IPR012458 Pfam:PF07889 Uniprot:A8MRN9
        Length = 334

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 59/229 (25%), Positives = 112/229 (48%)

Query:     5 FSCVSGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQ 64
             F  V G+  S++ + GRLS +   +   L     +  +  P   D  L    + ++++  
Sbjct:    31 FHHVQGVSGSIVLRHGRLSDLIAQLQDLLNGAQGV--ESTPFKYDGALLAAQIRQLANEI 88

Query:    65 QELSHVPRSVIIETSSGSGTXXXXXXXXXXXXXXXXXXXWWKGWKLPDMMFATRRSLSDA 124
             +EL+      I    S S                     WWKGW   D MF T+++++DA
Sbjct:    89 KELTMTNPVTIFNGDSNSSGYASYLVPAAAVGAMGYCYMWWKGWSFSDAMFVTKKNMADA 148

Query:   125 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 184
               SV++QL+D+  ++++ ++ LS K+ ++D  V +  E S+    +VT +R     IG +
Sbjct:   149 VASVSKQLDDLSDTLASTRKHLSQKLATLDWKVEEQNETSKMILSDVTEMRSSISQIGFD 208

Query:   185 FQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQ 233
             F+ + +++  +E K+  +E KQD+T  G+  LC  A  +++   T++ Q
Sbjct:   209 FKQLNEMISGIEGKIESLESKQDVTLSGLWHLCQVAG-VKDSTSTKVFQ 256


>TAIR|locus:2205734 [details] [associations]
            symbol:AT1G27000 "AT1G27000" species:3702 "Arabidopsis
            thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355
            "regulation of transcription, DNA-dependent" evidence=ISS]
            EMBL:CP002684 InterPro:IPR012458 Pfam:PF07889
            ProtClustDB:CLSN2683700 EMBL:AF360143 EMBL:AY056367 EMBL:AY057525
            IPI:IPI00536700 RefSeq:NP_564269.1 UniGene:At.16262 STRING:Q9C5M5
            PRIDE:Q9C5M5 EnsemblPlants:AT1G27000.1 GeneID:839590
            KEGG:ath:AT1G27000 TAIR:At1g27000 InParanoid:Q9C5M5 OMA:AMEIRQL
            PhylomeDB:Q9C5M5 ArrayExpress:Q9C5M5 Genevestigator:Q9C5M5
            Uniprot:Q9C5M5
        Length = 304

 Score = 198 (74.8 bits), Expect = 9.7e-15, P = 9.7e-15
 Identities = 49/210 (23%), Positives = 99/210 (47%)

Query:     4 FFSCVSGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSV 63
             F    +G   +++ K G+LS   D +G    +V  + K  +    D  + + + A+V  +
Sbjct:    13 FLLAGAGYTGTIMMKNGKLS---DLLGELQSLVKGMEKSGEGSEGDSDVSDAIAAQVRRL 69

Query:    64 QQELSHVPRSVIIETSSG-SGTXXXXXXX-XXXXXXXXXXXXWWKGWKLPDMMFATRRSL 121
               E+  +     I   +G SG                     WWKG    D+M+ T+ ++
Sbjct:    70 AMEIRQLASQQHITVMNGVSGANLQALAVPAAALGALGYGYMWWKGLSFTDLMYVTKANM 129

Query:   122 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 181
             + A  ++ + LE V  +++AA+R L+ +I ++D  V K +++S+    +V   R     +
Sbjct:   130 AAAVANLTKNLEQVSETLAAAKRHLTQRIQNLDDKVEKQIDLSKEINSQVISARENISSL 189

Query:   182 GDEFQSVRDIVQTLESKLIEIEGKQDITTL 211
               + +S+ +++  L+ KL  +E KQD+T +
Sbjct:   190 EMDLESLHNLITGLDGKLDTLEYKQDVTNV 219


>TAIR|locus:2058832 [details] [associations]
            symbol:AT2G02730 "AT2G02730" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC002521
            UniGene:At.41462 UniGene:At.48411 HOGENOM:HOG000237587
            InterPro:IPR012458 Pfam:PF07889 EMBL:AY088742 EMBL:BT005277
            EMBL:AK119082 IPI:IPI00544088 PIR:T00855 RefSeq:NP_178376.1
            RefSeq:NP_973402.1 PaxDb:O64509 PRIDE:O64509
            EnsemblPlants:AT2G02730.1 EnsemblPlants:AT2G02730.2 GeneID:814802
            KEGG:ath:AT2G02730 TAIR:At2g02730 eggNOG:NOG263474
            InParanoid:O64509 OMA:RNMENAV PhylomeDB:O64509
            ProtClustDB:CLSN2683700 ArrayExpress:O64509 Genevestigator:O64509
            Uniprot:O64509
        Length = 276

 Score = 179 (68.1 bits), Expect = 3.0e-12, P = 3.0e-12
 Identities = 50/232 (21%), Positives = 104/232 (44%)

Query:     9 SGILTSVLAKEGRLSSVSDAVGGTLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQQELS 68
             +G  +++L K G+++   D +G    +V +  K  D    D       +  ++   ++L+
Sbjct:    18 AGYTSTILVKNGKMA---DILGELQALVKRFEKSGDHVDDDSDAMTTQMQRLAMEVRQLA 74

Query:    69 HVPRSVIIETSSGSGTXXXXXXXXXXXXXXXXXXXWWKGWKLPDMMFATRRSLSDACNSV 128
                R + +   +                       W+KG    D+M  T+R++ +A +++
Sbjct:    75 S-SRQITVMNGAQGADFTPFIVPAATLGALGYGYMWFKGISFSDIMCVTKRNMENAVSNL 133

Query:   129 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 188
              + L+ V  +I  A++ LS ++  VD  ++   ++ +  Q+ V +       IGD+F ++
Sbjct:   134 TKHLDTVSEAILNAKKHLSQRLQKVDDKLDLQKDLLKGVQDNVGLALEDLANIGDDFDAM 193

Query:   189 RDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLS 240
               I   +  KL  IE KQ+I  +G+  LCD     EN +  +++   +  LS
Sbjct:   194 HSIFGGMGGKLDSIEYKQNIANMGLIYLCDSLGG-ENHKMPDILMQEKLRLS 244


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.130   0.359    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      322       281   0.00083  115 3  11 22  0.39    34
                                                     33  0.42    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  165 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.82u 0.30s 21.12t   Elapsed:  00:00:01
  Total cpu time:  20.82u 0.30s 21.12t   Elapsed:  00:00:01
  Start:  Fri May 10 06:54:13 2013   End:  Fri May 10 06:54:14 2013

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