Query 020751
Match_columns 322
No_of_seqs 63 out of 65
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 04:50:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020751.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020751hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07889 DUF1664: Protein of u 100.0 8.4E-59 1.8E-63 394.1 14.0 120 87-206 6-126 (126)
2 PF10805 DUF2730: Protein of u 96.9 0.0018 3.8E-08 53.8 5.5 88 89-202 9-98 (106)
3 PRK10884 SH3 domain-containing 95.9 0.27 5.8E-06 45.6 13.9 99 99-205 66-168 (206)
4 PF04375 HemX: HemX; InterPro 95.8 0.077 1.7E-06 52.3 10.3 10 96-105 41-50 (372)
5 KOG2629 Peroxisomal membrane a 95.3 0.059 1.3E-06 52.7 7.4 102 56-158 39-164 (300)
6 PF01519 DUF16: Protein of unk 94.6 0.23 5E-06 42.0 8.2 82 114-204 21-102 (102)
7 PF00038 Filament: Intermediat 93.5 3 6.6E-05 39.1 14.3 91 121-211 167-258 (312)
8 PF14712 Snapin_Pallidin: Snap 93.4 1.3 2.8E-05 35.0 10.1 72 131-203 15-91 (92)
9 PHA02562 46 endonuclease subun 93.1 1 2.2E-05 45.2 11.2 86 127-212 192-277 (562)
10 PRK11637 AmiB activator; Provi 93.0 1.4 2.9E-05 44.0 11.7 80 121-200 45-127 (428)
11 PRK15048 methyl-accepting chem 92.6 7 0.00015 39.6 16.4 21 236-256 524-544 (553)
12 PF11932 DUF3450: Protein of u 92.6 3 6.4E-05 38.8 12.7 78 130-207 24-101 (251)
13 PF04582 Reo_sigmaC: Reovirus 92.3 0.17 3.8E-06 50.1 4.4 86 120-205 67-155 (326)
14 PF10158 LOH1CR12: Tumour supp 91.6 3.9 8.5E-05 35.7 11.5 50 119-168 27-76 (131)
15 PF07889 DUF1664: Protein of u 91.5 3.3 7.1E-05 36.1 10.9 38 135-172 30-67 (126)
16 PRK11637 AmiB activator; Provi 91.5 1.7 3.7E-05 43.3 10.4 78 126-203 43-123 (428)
17 smart00502 BBC B-Box C-termina 91.1 2.4 5.2E-05 33.5 9.1 33 206-238 84-117 (127)
18 PRK10920 putative uroporphyrin 91.0 0.96 2.1E-05 45.7 8.1 67 85-159 35-103 (390)
19 PF07798 DUF1640: Protein of u 90.8 11 0.00024 33.6 13.8 98 115-215 43-145 (177)
20 PF12718 Tropomyosin_1: Tropom 90.3 5 0.00011 35.1 11.0 63 145-207 77-139 (143)
21 PF06419 COG6: Conserved oligo 89.7 2.9 6.2E-05 44.2 10.7 88 110-200 6-97 (618)
22 PF00015 MCPsignal: Methyl-acc 89.7 12 0.00027 32.2 12.9 15 56-70 45-59 (213)
23 PF13747 DUF4164: Domain of un 89.6 4.4 9.5E-05 33.0 9.4 81 136-220 3-83 (89)
24 KOG0250 DNA repair protein RAD 89.0 5.3 0.00012 45.2 12.5 98 129-226 290-387 (1074)
25 PF00015 MCPsignal: Methyl-acc 88.2 16 0.00034 31.5 13.9 25 175-199 134-158 (213)
26 PF11932 DUF3450: Protein of u 88.2 8.4 0.00018 35.8 11.5 76 125-200 33-108 (251)
27 PF06103 DUF948: Bacterial pro 87.8 5 0.00011 31.7 8.5 20 183-202 68-87 (90)
28 PF10046 BLOC1_2: Biogenesis o 86.9 13 0.00028 30.4 10.7 68 138-205 25-95 (99)
29 PF05816 TelA: Toxic anion res 86.4 9.9 0.00022 37.1 11.4 100 117-216 85-202 (333)
30 PF01442 Apolipoprotein: Apoli 86.3 13 0.00029 31.1 10.7 19 121-139 3-21 (202)
31 PF04156 IncA: IncA protein; 86.3 13 0.00029 32.6 11.2 6 215-220 176-181 (191)
32 PF05478 Prominin: Prominin; 86.0 7.9 0.00017 42.1 11.5 33 125-157 189-222 (806)
33 PRK04778 septation ring format 85.9 16 0.00034 38.2 13.1 121 98-218 237-411 (569)
34 PRK13729 conjugal transfer pil 85.7 9.6 0.00021 39.9 11.4 51 156-206 70-120 (475)
35 PRK06975 bifunctional uroporph 85.5 5.2 0.00011 42.7 9.6 40 136-175 373-412 (656)
36 PHA02562 46 endonuclease subun 85.4 13 0.00029 37.4 12.1 76 126-202 309-384 (562)
37 COG3883 Uncharacterized protei 85.3 5.9 0.00013 38.5 9.1 67 133-199 37-103 (265)
38 PF04513 Baculo_PEP_C: Baculov 84.9 16 0.00034 32.7 10.9 83 120-202 35-118 (140)
39 TIGR02132 phaR_Bmeg polyhydrox 84.8 4 8.7E-05 37.9 7.4 57 146-202 77-133 (189)
40 PF05531 NPV_P10: Nucleopolyhe 83.9 4.3 9.4E-05 32.7 6.3 53 123-176 11-63 (75)
41 PF09730 BicD: Microtubule-ass 83.9 57 0.0012 35.9 16.6 102 122-231 372-473 (717)
42 PF10241 KxDL: Uncharacterized 83.4 11 0.00024 30.4 8.6 63 139-201 16-82 (88)
43 TIGR00293 prefoldin, archaeal 83.3 2.6 5.6E-05 35.0 5.1 55 94-179 70-124 (126)
44 COG4942 Membrane-bound metallo 83.3 12 0.00026 38.7 10.7 82 130-216 38-119 (420)
45 PRK10884 SH3 domain-containing 83.3 14 0.0003 34.4 10.3 70 120-189 97-166 (206)
46 PRK15048 methyl-accepting chem 83.0 33 0.00072 34.8 13.8 61 133-193 269-329 (553)
47 PF04100 Vps53_N: Vps53-like, 82.9 5.1 0.00011 40.1 7.9 41 185-225 59-99 (383)
48 PF10498 IFT57: Intra-flagella 82.5 15 0.00033 36.8 11.0 78 112-193 234-318 (359)
49 PF04380 BMFP: Membrane fusoge 82.4 8.9 0.00019 30.5 7.6 78 114-204 1-78 (79)
50 PF00261 Tropomyosin: Tropomyo 82.4 21 0.00045 33.1 11.2 69 147-215 91-159 (237)
51 smart00283 MA Methyl-accepting 82.3 33 0.00072 30.0 13.9 51 153-203 37-87 (262)
52 PRK04778 septation ring format 82.3 24 0.00053 36.8 12.8 18 53-70 251-268 (569)
53 PF10805 DUF2730: Protein of u 82.1 9.4 0.0002 31.7 7.9 65 147-218 34-100 (106)
54 smart00806 AIP3 Actin interact 81.4 27 0.00058 36.3 12.4 94 119-212 176-301 (426)
55 PRK13182 racA polar chromosome 81.3 7.1 0.00015 35.5 7.5 63 140-204 84-146 (175)
56 PRK09039 hypothetical protein; 81.2 20 0.00043 35.5 11.1 87 132-218 100-194 (343)
57 PF10226 DUF2216: Uncharacteri 80.6 51 0.0011 31.0 14.1 38 185-222 103-143 (195)
58 PF09177 Syntaxin-6_N: Syntaxi 80.0 7.8 0.00017 31.3 6.6 24 140-163 38-61 (97)
59 PF10186 Atg14: UV radiation r 79.9 33 0.00071 31.4 11.5 47 140-186 62-108 (302)
60 PRK04406 hypothetical protein; 79.6 8.6 0.00019 30.6 6.6 46 141-186 4-49 (75)
61 PF08614 ATG16: Autophagy prot 79.5 7.6 0.00017 34.9 7.1 96 109-204 71-172 (194)
62 PF05739 SNARE: SNARE domain; 79.4 15 0.00032 26.7 7.4 51 149-199 5-55 (63)
63 PF06103 DUF948: Bacterial pro 79.3 21 0.00045 28.1 8.7 30 114-143 17-46 (90)
64 PF04102 SlyX: SlyX; InterPro 79.2 8 0.00017 29.9 6.2 52 146-204 2-53 (69)
65 PRK11166 chemotaxis regulator 78.3 32 0.00068 32.6 10.9 114 119-232 26-168 (214)
66 PF12718 Tropomyosin_1: Tropom 78.2 46 0.001 29.1 12.6 90 123-216 17-106 (143)
67 PF05791 Bacillus_HBL: Bacillu 78.1 26 0.00056 31.6 10.0 89 117-205 78-171 (184)
68 smart00283 MA Methyl-accepting 78.0 47 0.001 29.1 14.0 73 120-192 137-209 (262)
69 cd00890 Prefoldin Prefoldin is 77.7 5.6 0.00012 32.5 5.2 38 143-180 89-126 (129)
70 PF04582 Reo_sigmaC: Reovirus 77.6 1.3 2.9E-05 44.0 1.8 100 121-226 40-155 (326)
71 KOG1161 Protein involved in va 77.5 6.3 0.00014 39.1 6.4 71 120-191 45-115 (310)
72 PF09602 PhaP_Bmeg: Polyhydrox 77.3 31 0.00066 31.7 10.2 88 105-202 14-104 (165)
73 TIGR01837 PHA_granule_1 poly(h 77.3 21 0.00046 30.2 8.7 63 142-204 53-117 (118)
74 cd00584 Prefoldin_alpha Prefol 77.2 5.9 0.00013 33.0 5.3 42 139-180 85-126 (129)
75 PF12325 TMF_TATA_bd: TATA ele 77.0 23 0.0005 30.5 8.9 64 116-180 44-107 (120)
76 PF06008 Laminin_I: Laminin Do 76.9 33 0.00072 32.1 10.7 81 121-205 22-102 (264)
77 PF07888 CALCOCO1: Calcium bin 76.9 27 0.00059 37.2 11.1 77 111-187 129-210 (546)
78 PRK14011 prefoldin subunit alp 76.7 5.5 0.00012 35.2 5.2 40 138-177 85-124 (144)
79 PF08317 Spc7: Spc7 kinetochor 76.5 35 0.00076 33.2 11.1 47 112-158 152-201 (325)
80 PF05531 NPV_P10: Nucleopolyhe 76.5 13 0.00027 30.1 6.7 22 181-202 40-61 (75)
81 COG4942 Membrane-bound metallo 76.4 36 0.00078 35.3 11.6 91 117-207 158-255 (420)
82 PRK04863 mukB cell division pr 76.3 47 0.001 39.3 13.7 81 123-203 314-403 (1486)
83 COG1196 Smc Chromosome segrega 76.1 57 0.0012 37.0 14.1 12 3-14 643-655 (1163)
84 PF05597 Phasin: Poly(hydroxya 76.0 21 0.00046 31.2 8.6 25 182-206 108-132 (132)
85 PRK09793 methyl-accepting prot 75.8 76 0.0016 32.4 13.7 6 254-259 520-525 (533)
86 PF08317 Spc7: Spc7 kinetochor 75.5 83 0.0018 30.6 13.5 31 131-161 153-183 (325)
87 COG1579 Zn-ribbon protein, pos 75.4 14 0.0003 35.5 7.9 56 149-204 11-66 (239)
88 COG1196 Smc Chromosome segrega 75.4 58 0.0013 37.0 13.9 23 181-203 875-897 (1163)
89 PF02996 Prefoldin: Prefoldin 75.3 7.1 0.00015 31.7 5.2 41 139-179 75-115 (120)
90 PRK00846 hypothetical protein; 75.1 20 0.00042 29.0 7.5 55 143-204 8-62 (77)
91 PRK09793 methyl-accepting prot 75.1 81 0.0018 32.2 13.8 34 145-178 279-312 (533)
92 PF10498 IFT57: Intra-flagella 74.6 17 0.00037 36.4 8.7 89 112-200 223-311 (359)
93 KOG0972 Huntingtin interacting 74.1 31 0.00068 34.8 10.1 100 106-205 223-327 (384)
94 PF12732 YtxH: YtxH-like prote 73.9 14 0.0003 28.5 6.2 39 96-141 13-51 (74)
95 PF07295 DUF1451: Protein of u 73.3 15 0.00032 32.7 7.0 55 133-187 3-58 (146)
96 PF03915 AIP3: Actin interacti 73.0 30 0.00064 35.7 10.0 86 136-221 201-306 (424)
97 PF14197 Cep57_CLD_2: Centroso 73.0 35 0.00076 26.8 8.3 66 138-203 2-67 (69)
98 PF10073 DUF2312: Uncharacteri 72.6 13 0.00029 29.9 6.0 44 144-194 7-50 (74)
99 COG3750 Uncharacterized protei 72.5 22 0.00048 29.4 7.2 44 144-194 17-60 (85)
100 PF05008 V-SNARE: Vesicle tran 72.3 25 0.00054 26.8 7.3 50 122-174 2-51 (79)
101 PF02403 Seryl_tRNA_N: Seryl-t 71.6 19 0.00041 29.1 6.8 62 140-205 35-96 (108)
102 TIGR00833 actII Transport prot 71.5 44 0.00095 36.9 11.6 49 178-226 602-650 (910)
103 PF04740 LXG: LXG domain of WX 71.4 73 0.0016 28.1 11.8 30 178-207 140-169 (204)
104 PF10018 Med4: Vitamin-D-recep 71.4 50 0.0011 29.7 10.1 87 132-229 11-99 (188)
105 PF06120 Phage_HK97_TLTM: Tail 71.1 63 0.0014 32.0 11.4 57 119-175 41-101 (301)
106 PF12128 DUF3584: Protein of u 71.1 49 0.0011 37.7 12.1 94 125-221 258-352 (1201)
107 PRK03947 prefoldin subunit alp 71.0 10 0.00022 32.2 5.3 38 140-177 93-130 (140)
108 PRK15041 methyl-accepting chem 70.7 1.1E+02 0.0024 31.6 13.6 12 121-132 252-263 (554)
109 PF10168 Nup88: Nuclear pore c 70.5 42 0.00091 36.7 11.0 32 143-174 588-619 (717)
110 PF04129 Vps52: Vps52 / Sac2 f 70.4 50 0.0011 34.2 11.1 84 147-230 13-99 (508)
111 PF04513 Baculo_PEP_C: Baculov 69.8 80 0.0017 28.3 10.7 80 121-203 18-105 (140)
112 TIGR01916 F420_cofE F420-0:gam 69.4 3.1 6.7E-05 39.9 2.1 74 57-130 125-202 (243)
113 TIGR00996 Mtu_fam_mce virulenc 68.9 92 0.002 29.1 11.6 8 56-63 135-142 (291)
114 KOG0161 Myosin class II heavy 68.7 40 0.00087 40.9 11.1 81 123-203 1361-1441(1930)
115 TIGR01000 bacteriocin_acc bact 68.5 47 0.001 33.5 10.2 38 130-167 161-198 (457)
116 PF06160 EzrA: Septation ring 68.5 65 0.0014 33.8 11.6 121 98-218 233-407 (560)
117 PF06160 EzrA: Septation ring 67.9 24 0.00053 36.9 8.3 61 133-193 371-431 (560)
118 PRK10698 phage shock protein P 67.8 53 0.0011 30.6 9.7 80 125-209 97-185 (222)
119 PRK02224 chromosome segregatio 67.7 51 0.0011 35.6 10.9 29 131-159 163-198 (880)
120 KOG4674 Uncharacterized conser 67.6 33 0.00072 41.3 10.0 23 130-152 805-827 (1822)
121 PRK02119 hypothetical protein; 67.5 23 0.0005 27.9 6.3 51 145-202 6-56 (73)
122 PF06295 DUF1043: Protein of u 67.5 22 0.00048 30.5 6.7 51 113-171 16-66 (128)
123 PF15358 TSKS: Testis-specific 67.4 51 0.0011 34.6 10.3 122 145-268 136-261 (558)
124 PF10146 zf-C4H2: Zinc finger- 67.4 1.2E+02 0.0025 28.9 16.0 67 155-221 32-98 (230)
125 TIGR03185 DNA_S_dndD DNA sulfu 67.1 82 0.0018 33.3 12.1 34 169-202 435-468 (650)
126 PRK02224 chromosome segregatio 67.0 1.4E+02 0.003 32.3 13.9 12 127-138 184-195 (880)
127 PF10168 Nup88: Nuclear pore c 67.0 74 0.0016 34.8 12.0 77 121-201 541-618 (717)
128 PF15397 DUF4618: Domain of un 66.7 92 0.002 30.4 11.3 47 129-175 62-108 (258)
129 PF01442 Apolipoprotein: Apoli 66.7 76 0.0016 26.5 13.5 12 56-67 32-43 (202)
130 PRK02793 phi X174 lysis protei 66.4 22 0.00047 27.9 5.9 52 145-203 5-56 (72)
131 KOG0250 DNA repair protein RAD 66.1 59 0.0013 37.4 11.2 89 116-205 334-423 (1074)
132 TIGR03495 phage_LysB phage lys 66.1 14 0.00029 32.7 5.2 15 93-107 7-21 (135)
133 TIGR00606 rad50 rad50. This fa 66.0 1.1E+02 0.0023 35.4 13.4 79 114-192 879-957 (1311)
134 smart00787 Spc7 Spc7 kinetocho 65.9 1.3E+02 0.0027 29.8 12.4 85 118-202 153-244 (312)
135 cd00632 Prefoldin_beta Prefold 65.5 16 0.00035 29.8 5.3 15 56-70 18-32 (105)
136 TIGR01843 type_I_hlyD type I s 65.5 1.3E+02 0.0028 28.8 13.0 15 56-70 86-100 (423)
137 TIGR03513 GldL_gliding gliding 65.1 97 0.0021 29.3 10.9 89 112-202 103-191 (202)
138 KOG4117 Heat shock factor bind 65.1 42 0.00092 26.9 7.2 46 117-162 10-55 (73)
139 PF03908 Sec20: Sec20; InterP 65.0 69 0.0015 25.6 8.7 60 133-196 4-63 (92)
140 COG3074 Uncharacterized protei 64.9 72 0.0016 26.0 8.6 67 150-216 6-72 (79)
141 PF05701 WEMBL: Weak chloropla 64.9 1.2E+02 0.0026 31.6 12.6 43 163-205 282-324 (522)
142 PF10828 DUF2570: Protein of u 64.8 22 0.00048 29.5 6.1 20 92-111 9-28 (110)
143 PRK00295 hypothetical protein; 64.8 29 0.00063 27.0 6.3 50 146-202 3-52 (68)
144 PRK13694 hypothetical protein; 64.7 34 0.00074 28.3 6.9 44 144-194 15-58 (83)
145 PF15188 CCDC-167: Coiled-coil 64.6 20 0.00044 29.5 5.6 59 127-189 2-63 (85)
146 PRK10803 tol-pal system protei 64.2 27 0.00059 33.1 7.3 38 164-201 63-100 (263)
147 PRK03918 chromosome segregatio 63.6 52 0.0011 35.3 9.9 62 131-192 159-223 (880)
148 COG3883 Uncharacterized protei 63.6 40 0.00086 33.0 8.3 55 150-204 33-87 (265)
149 PF04912 Dynamitin: Dynamitin 63.3 39 0.00084 33.6 8.4 55 145-202 333-387 (388)
150 PRK09110 flagellar motor prote 63.0 55 0.0012 31.9 9.2 93 89-183 5-106 (283)
151 PF05667 DUF812: Protein of un 63.0 98 0.0021 33.3 11.8 91 119-209 397-487 (594)
152 PRK04325 hypothetical protein; 62.8 32 0.00069 27.2 6.2 52 145-203 6-57 (74)
153 PRK00736 hypothetical protein; 62.0 31 0.00068 26.8 6.0 50 146-202 3-52 (68)
154 PRK03918 chromosome segregatio 62.0 98 0.0021 33.2 11.6 11 148-158 640-650 (880)
155 PF03670 UPF0184: Uncharacteri 61.8 36 0.00078 28.1 6.5 48 125-176 28-75 (83)
156 PF04111 APG6: Autophagy prote 61.8 67 0.0015 31.5 9.6 70 134-203 64-133 (314)
157 PLN03094 Substrate binding sub 61.7 35 0.00075 34.6 7.8 15 55-69 231-245 (370)
158 cd07596 BAR_SNX The Bin/Amphip 61.3 1.1E+02 0.0023 26.5 13.5 97 119-218 60-173 (218)
159 TIGR03185 DNA_S_dndD DNA sulfu 60.6 84 0.0018 33.3 10.7 43 146-188 426-468 (650)
160 cd07912 Tweety_N N-terminal do 60.4 44 0.00096 34.4 8.4 83 94-181 93-184 (418)
161 PF04799 Fzo_mitofusin: fzo-li 60.2 50 0.0011 30.4 7.9 64 134-204 102-165 (171)
162 COG2900 SlyX Uncharacterized p 60.2 36 0.00078 27.5 6.1 38 143-180 3-40 (72)
163 PF03148 Tektin: Tektin family 60.1 1.5E+02 0.0033 29.7 11.9 20 184-203 325-344 (384)
164 COG5283 Phage-related tail pro 59.9 89 0.0019 36.4 11.2 91 121-211 27-120 (1213)
165 cd00193 t_SNARE Soluble NSF (N 59.9 52 0.0011 22.9 6.4 42 148-189 6-47 (60)
166 PRK10698 phage shock protein P 59.2 1.5E+02 0.0033 27.6 11.3 41 167-207 97-137 (222)
167 KOG2180 Late Golgi protein sor 59.1 46 0.001 36.9 8.6 26 141-166 40-65 (793)
168 PF10779 XhlA: Haemolysin XhlA 59.0 32 0.0007 26.5 5.6 15 145-159 3-17 (71)
169 smart00787 Spc7 Spc7 kinetocho 58.9 1.7E+02 0.0036 29.0 11.8 36 170-205 205-240 (312)
170 PF04375 HemX: HemX; InterPro 58.6 91 0.002 31.0 10.1 17 92-108 40-56 (372)
171 PF15450 DUF4631: Domain of un 58.5 77 0.0017 33.9 9.9 93 109-201 333-448 (531)
172 PF08700 Vps51: Vps51/Vps67; 58.4 82 0.0018 24.1 7.9 60 141-203 26-85 (87)
173 PRK04098 sec-independent trans 58.2 31 0.00068 31.3 6.2 57 119-176 23-79 (158)
174 PF03114 BAR: BAR domain; Int 57.9 60 0.0013 27.8 7.7 15 56-70 31-45 (229)
175 COG1256 FlgK Flagellar hook-as 57.8 78 0.0017 33.7 9.9 83 116-202 131-213 (552)
176 cd00179 SynN Syntaxin N-termin 57.7 95 0.0021 25.9 8.7 19 123-141 6-24 (151)
177 COG1842 PspA Phage shock prote 57.6 1.4E+02 0.0031 28.2 10.7 90 115-209 91-185 (225)
178 PF07851 TMPIT: TMPIT-like pro 57.4 88 0.0019 31.5 9.7 22 291-312 239-260 (330)
179 PF00804 Syntaxin: Syntaxin; 57.4 84 0.0018 24.0 10.5 61 121-181 5-68 (103)
180 PHA01750 hypothetical protein 56.9 34 0.00074 27.6 5.4 31 113-143 24-55 (75)
181 TIGR00996 Mtu_fam_mce virulenc 56.8 1.7E+02 0.0037 27.3 11.3 7 189-195 233-239 (291)
182 PF04344 CheZ: Chemotaxis phos 56.7 1.3E+02 0.0028 27.9 10.2 116 119-234 13-158 (214)
183 PF11559 ADIP: Afadin- and alp 56.4 1.3E+02 0.0028 25.8 13.7 88 116-204 28-115 (151)
184 PF09304 Cortex-I_coil: Cortex 56.3 77 0.0017 27.3 7.9 44 118-161 11-57 (107)
185 PLN02678 seryl-tRNA synthetase 56.3 44 0.00096 34.6 7.7 63 139-205 38-100 (448)
186 PRK06975 bifunctional uroporph 56.3 29 0.00063 37.2 6.6 29 167-195 383-411 (656)
187 KOG3385 V-SNARE [Intracellular 56.3 32 0.0007 30.1 5.6 68 145-217 33-100 (118)
188 COG3165 Uncharacterized protei 56.2 43 0.00093 31.7 6.9 66 134-205 134-201 (204)
189 PF14257 DUF4349: Domain of un 56.2 32 0.0007 32.0 6.2 34 167-200 160-193 (262)
190 cd07667 BAR_SNX30 The Bin/Amph 56.0 94 0.002 29.9 9.3 76 145-220 55-130 (240)
191 PF09177 Syntaxin-6_N: Syntaxi 56.0 1.1E+02 0.0023 24.7 9.9 8 192-199 86-93 (97)
192 TIGR00414 serS seryl-tRNA synt 56.0 1E+02 0.0022 31.4 10.0 67 138-208 34-101 (418)
193 PF06156 DUF972: Protein of un 55.5 52 0.0011 27.8 6.7 30 118-147 3-32 (107)
194 PRK12704 phosphodiesterase; Pr 55.3 89 0.0019 32.8 9.8 15 275-291 214-228 (520)
195 TIGR02894 DNA_bind_RsfA transc 55.0 1.7E+02 0.0037 26.8 11.5 84 137-220 61-148 (161)
196 smart00502 BBC B-Box C-termina 54.9 1E+02 0.0022 24.2 10.8 37 122-158 20-56 (127)
197 PF05377 FlaC_arch: Flagella a 54.8 26 0.00056 26.9 4.3 8 151-158 3-10 (55)
198 PLN03184 chloroplast Hsp70; Pr 54.8 1.3E+02 0.0028 32.4 11.1 22 137-158 562-583 (673)
199 PF00509 Hemagglutinin: Haemag 54.3 12 0.00027 39.7 3.4 62 115-176 363-431 (550)
200 PF09748 Med10: Transcription 54.3 1.2E+02 0.0025 26.2 8.8 45 122-166 2-51 (128)
201 PF06148 COG2: COG (conserved 54.2 21 0.00046 30.1 4.2 48 120-167 66-113 (133)
202 KOG0994 Extracellular matrix g 54.1 1.7E+02 0.0037 34.8 12.1 49 173-221 1581-1629(1758)
203 PF10146 zf-C4H2: Zinc finger- 54.0 2E+02 0.0044 27.3 11.3 35 143-177 48-82 (230)
204 PF05791 Bacillus_HBL: Bacillu 54.0 1.3E+02 0.0029 27.0 9.5 73 126-198 106-178 (184)
205 PF07106 TBPIP: Tat binding pr 53.9 79 0.0017 27.7 7.9 20 184-203 117-136 (169)
206 PRK15422 septal ring assembly 53.8 1.2E+02 0.0025 25.0 8.1 67 150-216 6-72 (79)
207 PRK05431 seryl-tRNA synthetase 53.8 66 0.0014 32.7 8.3 65 139-207 33-97 (425)
208 KOG4593 Mitotic checkpoint pro 53.6 1.8E+02 0.0038 32.3 11.8 100 119-218 115-214 (716)
209 COG1283 NptA Na+/phosphate sym 53.0 1.4E+02 0.0031 31.9 10.8 97 118-221 337-449 (533)
210 PF10241 KxDL: Uncharacterized 53.0 1.1E+02 0.0025 24.6 8.1 54 128-181 23-76 (88)
211 PF02646 RmuC: RmuC family; I 52.9 67 0.0014 31.1 7.9 17 270-286 100-116 (304)
212 TIGR00634 recN DNA repair prot 52.9 86 0.0019 32.7 9.2 108 110-221 249-370 (563)
213 KOG2196 Nuclear porin [Nuclear 52.7 1E+02 0.0022 30.1 9.0 70 136-205 84-156 (254)
214 PF10018 Med4: Vitamin-D-recep 52.6 80 0.0017 28.5 7.9 27 135-161 3-29 (188)
215 PF06009 Laminin_II: Laminin D 52.6 4.6 0.0001 34.7 0.0 36 173-208 49-84 (138)
216 KOG0976 Rho/Rac1-interacting s 52.5 1.4E+02 0.003 34.2 10.8 101 120-220 274-374 (1265)
217 KOG2391 Vacuolar sorting prote 52.4 1.7E+02 0.0037 30.0 10.7 69 111-180 217-285 (365)
218 PF12352 V-SNARE_C: Snare regi 52.2 89 0.0019 23.1 6.9 43 150-192 10-52 (66)
219 PF06005 DUF904: Protein of un 52.2 71 0.0015 25.3 6.6 63 132-201 9-71 (72)
220 PF04108 APG17: Autophagy prot 52.1 2.7E+02 0.0058 28.2 12.6 23 119-141 206-228 (412)
221 PF05266 DUF724: Protein of un 52.0 2E+02 0.0042 26.6 10.7 61 142-202 125-185 (190)
222 PF06320 GCN5L1: GCN5-like pro 52.0 1.5E+02 0.0032 25.5 9.0 59 151-209 36-94 (121)
223 PF02646 RmuC: RmuC family; I 51.9 83 0.0018 30.5 8.4 45 120-164 3-47 (304)
224 PF12761 End3: Actin cytoskele 51.9 1.3E+02 0.0029 28.3 9.3 28 173-200 157-184 (195)
225 KOG0240 Kinesin (SMY1 subfamil 51.6 1.7E+02 0.0037 31.9 11.1 117 102-218 372-498 (607)
226 KOG0996 Structural maintenance 51.4 85 0.0019 36.7 9.4 80 138-218 960-1040(1293)
227 cd07622 BAR_SNX4 The Bin/Amphi 51.4 2E+02 0.0043 26.5 10.7 69 105-185 58-126 (201)
228 KOG0860 Synaptobrevin/VAMP-lik 51.4 1.7E+02 0.0036 25.6 9.4 68 147-214 28-95 (116)
229 PRK11032 hypothetical protein; 51.3 73 0.0016 28.9 7.4 51 132-185 12-66 (160)
230 PF06248 Zw10: Centromere/kine 51.3 2.1E+02 0.0045 30.0 11.7 80 122-203 28-109 (593)
231 PF05384 DegS: Sensor protein 51.2 57 0.0012 29.5 6.7 48 149-196 7-54 (159)
232 PF02994 Transposase_22: L1 tr 51.0 37 0.00081 33.9 6.0 18 188-205 170-187 (370)
233 TIGR02231 conserved hypothetic 50.9 1.7E+02 0.0037 30.1 10.8 84 121-204 69-173 (525)
234 PLN02867 Probable galacturonos 50.9 67 0.0015 34.3 8.1 41 160-203 118-158 (535)
235 KOG0996 Structural maintenance 50.8 83 0.0018 36.7 9.2 81 133-213 397-477 (1293)
236 KOG0804 Cytoplasmic Zn-finger 50.7 1.1E+02 0.0024 32.3 9.5 41 130-170 364-404 (493)
237 PF03233 Cauli_AT: Aphid trans 50.5 34 0.00074 31.3 5.2 32 156-187 129-160 (163)
238 cd07628 BAR_Atg24p The Bin/Amp 50.3 1.1E+02 0.0025 27.4 8.5 74 145-218 8-82 (185)
239 KOG4515 Uncharacterized conser 50.2 2.4E+02 0.0051 27.0 10.7 53 119-171 91-143 (217)
240 PF03962 Mnd1: Mnd1 family; I 50.1 2E+02 0.0044 26.2 10.7 38 108-148 57-94 (188)
241 PF06013 WXG100: Proteins of 1 50.1 96 0.0021 22.4 7.7 9 145-153 29-37 (86)
242 PF07439 DUF1515: Protein of u 49.9 87 0.0019 27.2 7.2 55 126-180 4-65 (112)
243 PF04778 LMP: LMP repeated reg 49.9 1.2E+02 0.0027 27.7 8.5 82 128-209 5-95 (157)
244 PF04791 LMBR1: LMBR1-like mem 49.8 90 0.0019 31.2 8.5 51 88-142 167-222 (471)
245 PF15450 DUF4631: Domain of un 49.7 1.7E+02 0.0037 31.4 10.7 44 119-162 336-379 (531)
246 PF10779 XhlA: Haemolysin XhlA 49.6 56 0.0012 25.2 5.6 22 167-188 4-25 (71)
247 PF06936 Selenoprotein_S: Sele 49.6 45 0.00098 30.9 5.9 62 89-151 36-97 (190)
248 PF10602 RPN7: 26S proteasome 49.4 49 0.0011 29.5 6.0 58 138-197 4-61 (177)
249 TIGR02338 gimC_beta prefoldin, 49.3 37 0.0008 28.0 4.8 21 114-135 59-79 (110)
250 COG5143 SNC1 Synaptobrevin/VAM 49.2 65 0.0014 30.2 6.9 56 128-183 127-185 (190)
251 TIGR00634 recN DNA repair prot 49.1 1.1E+02 0.0024 31.8 9.3 44 119-162 269-315 (563)
252 COG1463 Ttg2C ABC-type transpo 49.0 2.1E+02 0.0046 28.2 10.8 80 129-208 217-296 (359)
253 KOG3067 Translin family protei 48.8 1.1E+02 0.0024 29.2 8.3 101 127-227 6-111 (226)
254 PF07888 CALCOCO1: Calcium bin 48.7 2.2E+02 0.0049 30.6 11.5 36 172-207 286-321 (546)
255 PF12777 MT: Microtubule-bindi 48.7 74 0.0016 31.2 7.6 61 120-180 218-281 (344)
256 TIGR00383 corA magnesium Mg(2+ 48.5 1.4E+02 0.003 28.2 9.1 85 119-203 145-243 (318)
257 PF04111 APG6: Autophagy prote 48.4 2.5E+02 0.0054 27.6 11.1 77 137-213 53-129 (314)
258 KOG1924 RhoA GTPase effector D 48.4 2.6E+02 0.0057 32.0 12.2 123 145-272 369-555 (1102)
259 TIGR02492 flgK_ends flagellar 48.3 1.8E+02 0.004 28.1 10.1 56 116-171 127-182 (322)
260 TIGR02135 phoU_full phosphate 48.3 1.7E+02 0.0038 24.9 11.4 52 110-161 3-54 (212)
261 PF02994 Transposase_22: L1 tr 48.2 39 0.00085 33.8 5.7 19 185-203 146-164 (370)
262 TIGR02231 conserved hypothetic 48.2 1.3E+02 0.0027 31.0 9.4 89 123-211 67-166 (525)
263 PF01920 Prefoldin_2: Prefoldi 48.1 49 0.0011 25.9 5.2 43 139-181 60-102 (106)
264 PF00038 Filament: Intermediat 48.1 2.4E+02 0.0052 26.5 12.0 69 140-208 67-135 (312)
265 COG1511 Predicted membrane pro 47.9 2E+02 0.0042 31.7 11.3 104 120-223 148-260 (780)
266 KOG1029 Endocytic adaptor prot 47.8 49 0.0011 37.3 6.7 66 126-191 436-501 (1118)
267 PF04012 PspA_IM30: PspA/IM30 47.7 2.1E+02 0.0046 25.8 11.7 42 166-207 95-136 (221)
268 PF05701 WEMBL: Weak chloropla 47.6 3.5E+02 0.0077 28.3 13.4 71 150-220 367-437 (522)
269 COG2959 HemX Uncharacterized e 47.5 1.3E+02 0.0027 31.2 9.1 51 100-159 49-101 (391)
270 PRK06569 F0F1 ATP synthase sub 47.5 2.1E+02 0.0046 25.8 9.7 48 137-184 37-84 (155)
271 PF02520 DUF148: Domain of unk 47.3 1E+02 0.0022 25.2 7.1 48 118-165 42-89 (113)
272 PF08580 KAR9: Yeast cortical 47.3 79 0.0017 34.5 8.1 46 108-153 12-59 (683)
273 PF06148 COG2: COG (conserved 47.2 48 0.001 27.9 5.3 40 147-186 61-100 (133)
274 TIGR03818 MotA1 flagellar moto 47.2 98 0.0021 30.1 8.1 93 89-183 5-106 (282)
275 PF09738 DUF2051: Double stran 47.1 52 0.0011 32.5 6.2 61 139-199 103-163 (302)
276 PF06156 DUF972: Protein of un 46.6 33 0.00071 29.0 4.2 55 143-197 3-57 (107)
277 PF05802 EspB: Enterobacterial 46.4 2.2E+02 0.0047 28.7 10.2 63 142-204 148-210 (317)
278 COG4717 Uncharacterized conser 46.4 2.5E+02 0.0054 32.2 11.7 115 115-234 735-862 (984)
279 PF12732 YtxH: YtxH-like prote 46.2 57 0.0012 25.0 5.2 35 113-148 17-51 (74)
280 PF08702 Fib_alpha: Fibrinogen 46.0 2.1E+02 0.0046 25.2 12.3 96 110-205 23-126 (146)
281 COG4026 Uncharacterized protei 46.0 74 0.0016 31.1 6.9 15 23-38 17-31 (290)
282 PRK10869 recombination and rep 45.6 1.2E+02 0.0026 31.9 8.9 106 109-218 241-362 (553)
283 PF10883 DUF2681: Protein of u 45.5 23 0.00049 29.3 3.0 18 93-110 11-28 (87)
284 cd07651 F-BAR_PombeCdc15_like 45.5 2.5E+02 0.0053 25.8 12.6 38 111-148 95-132 (236)
285 PRK11091 aerobic respiration c 45.4 3.9E+02 0.0085 28.2 16.1 32 129-160 91-122 (779)
286 PF05739 SNARE: SNARE domain; 45.3 1.1E+02 0.0025 21.9 8.4 36 167-202 9-44 (63)
287 COG0497 RecN ATPase involved i 45.1 1.2E+02 0.0026 32.7 8.8 114 109-222 242-367 (557)
288 PRK13729 conjugal transfer pil 44.8 41 0.00089 35.4 5.4 37 168-204 75-111 (475)
289 PF11945 WASH_WAHD: WAHD domai 44.8 1E+02 0.0023 30.3 7.9 55 123-177 18-72 (297)
290 PF04799 Fzo_mitofusin: fzo-li 44.7 1.3E+02 0.0028 27.8 8.0 57 127-183 102-165 (171)
291 PF04100 Vps53_N: Vps53-like, 44.4 3.4E+02 0.0073 27.4 11.6 64 115-178 14-94 (383)
292 cd07667 BAR_SNX30 The Bin/Amph 44.1 3E+02 0.0066 26.5 13.5 31 119-149 103-133 (240)
293 PF06730 FAM92: FAM92 protein; 44.1 3E+02 0.0065 26.4 10.9 76 120-199 15-95 (219)
294 PRK04098 sec-independent trans 44.0 2.5E+02 0.0054 25.7 9.5 51 117-167 39-93 (158)
295 PRK11519 tyrosine kinase; Prov 43.8 4E+02 0.0087 28.8 12.7 27 121-147 265-291 (719)
296 PF07957 DUF3294: Protein of u 43.7 51 0.0011 31.4 5.4 66 142-216 5-78 (216)
297 TIGR00414 serS seryl-tRNA synt 43.5 1E+02 0.0022 31.3 7.9 73 148-220 30-106 (418)
298 PF03233 Cauli_AT: Aphid trans 43.5 1.7E+02 0.0037 26.9 8.5 21 186-206 138-158 (163)
299 cd07624 BAR_SNX7_30 The Bin/Am 43.4 1.6E+02 0.0035 26.6 8.5 70 145-214 18-87 (200)
300 COG3910 Predicted ATPase [Gene 43.4 31 0.00066 33.1 3.9 45 58-109 24-70 (233)
301 PF01996 F420_ligase: F420-0:G 43.3 4.1 8.9E-05 38.1 -1.9 73 57-130 133-210 (228)
302 TIGR02977 phageshock_pspA phag 43.3 2.7E+02 0.0058 25.6 10.1 89 117-209 93-185 (219)
303 PRK10361 DNA recombination pro 43.2 4E+02 0.0086 28.2 12.2 31 257-287 218-250 (475)
304 PF06009 Laminin_II: Laminin D 43.2 7.9 0.00017 33.3 0.0 66 147-212 16-81 (138)
305 PF12238 MSA-2c: Merozoite sur 43.2 1.9E+02 0.0042 27.3 9.1 21 151-171 6-26 (205)
306 PRK13293 F420-0--gamma-glutamy 43.2 19 0.00042 34.6 2.6 73 58-130 127-203 (245)
307 PRK10246 exonuclease subunit S 43.1 2.4E+02 0.0053 31.9 11.3 70 121-190 782-857 (1047)
308 PF02403 Seryl_tRNA_N: Seryl-t 43.0 1.8E+02 0.0038 23.5 10.1 73 146-218 27-102 (108)
309 PF10211 Ax_dynein_light: Axon 42.4 2.7E+02 0.0058 25.4 9.7 22 180-201 167-188 (189)
310 PF10234 Cluap1: Clusterin-ass 42.1 1.9E+02 0.0041 28.3 9.1 76 125-201 126-201 (267)
311 TIGR00606 rad50 rad50. This fa 42.1 3.8E+02 0.0083 31.1 12.9 23 146-168 939-961 (1311)
312 KOG2629 Peroxisomal membrane a 42.1 1E+02 0.0023 30.8 7.4 29 233-261 201-229 (300)
313 PF13094 CENP-Q: CENP-Q, a CEN 42.0 1.5E+02 0.0032 25.8 7.7 46 161-206 40-85 (160)
314 PRK01919 tatB sec-independent 42.0 1.7E+02 0.0038 27.0 8.3 32 119-150 23-54 (169)
315 TIGR01000 bacteriocin_acc bact 42.0 2.6E+02 0.0055 28.3 10.4 15 56-70 109-123 (457)
316 PLN02320 seryl-tRNA synthetase 42.0 1.5E+02 0.0032 31.5 8.9 92 105-205 63-159 (502)
317 PF04108 APG17: Autophagy prot 41.4 2.7E+02 0.0059 28.2 10.5 30 119-148 202-231 (412)
318 COG0598 CorA Mg2+ and Co2+ tra 41.3 3.4E+02 0.0073 26.2 11.7 92 112-203 143-247 (322)
319 PRK09039 hypothetical protein; 41.3 3.7E+02 0.008 26.7 13.0 24 281-305 264-287 (343)
320 PF14817 HAUS5: HAUS augmin-li 41.2 2.1E+02 0.0046 31.2 10.1 81 143-223 81-161 (632)
321 PHA03395 p10 fibrous body prot 41.2 78 0.0017 26.4 5.4 8 151-158 14-21 (87)
322 PF04012 PspA_IM30: PspA/IM30 41.1 1.9E+02 0.0041 26.1 8.5 15 56-70 28-42 (221)
323 KOG0994 Extracellular matrix g 41.1 1.4E+02 0.0031 35.3 9.1 68 132-203 1227-1294(1758)
324 TIGR01010 BexC_CtrB_KpsE polys 40.8 2.9E+02 0.0063 26.8 10.2 85 117-201 164-260 (362)
325 PF10392 COG5: Golgi transport 40.7 2.1E+02 0.0045 24.4 8.2 48 122-169 25-72 (132)
326 TIGR02976 phageshock_pspB phag 40.7 18 0.00039 29.0 1.7 44 113-159 24-67 (75)
327 PF05549 Allexi_40kDa: Allexiv 40.5 2.8E+02 0.006 27.5 9.9 34 257-293 165-206 (271)
328 KOG2199 Signal transducing ada 40.5 1E+02 0.0022 32.3 7.3 29 183-211 317-345 (462)
329 TIGR01834 PHA_synth_III_E poly 40.3 1.8E+02 0.0039 29.2 8.8 22 182-203 288-309 (320)
330 PF10267 Tmemb_cc2: Predicted 40.3 3.8E+02 0.0083 27.6 11.3 81 123-203 219-318 (395)
331 COG1730 GIM5 Predicted prefold 40.3 33 0.00071 30.6 3.4 62 94-157 61-131 (145)
332 KOG4603 TBP-1 interacting prot 40.3 1.4E+02 0.0029 28.2 7.4 59 146-204 84-144 (201)
333 PF13805 Pil1: Eisosome compon 40.1 3.8E+02 0.0082 26.4 12.4 80 122-205 95-180 (271)
334 COG5185 HEC1 Protein involved 40.0 1.6E+02 0.0034 31.7 8.6 99 104-202 361-513 (622)
335 PLN03223 Polycystin cation cha 39.9 1.5E+02 0.0033 35.5 9.2 91 117-212 767-859 (1634)
336 COG1463 Ttg2C ABC-type transpo 39.8 2E+02 0.0043 28.3 9.1 13 210-222 267-279 (359)
337 KOG0161 Myosin class II heavy 39.7 5.4E+02 0.012 31.9 13.8 48 117-164 930-980 (1930)
338 PF03915 AIP3: Actin interacti 39.6 4.6E+02 0.01 27.3 12.8 66 115-180 205-271 (424)
339 PF10174 Cast: RIM-binding pro 39.5 3E+02 0.0066 30.7 11.2 83 121-203 313-405 (775)
340 cd00024 CHROMO Chromatin organ 39.4 30 0.00064 24.0 2.5 25 100-124 21-45 (55)
341 KOG0809 SNARE protein TLG2/Syn 39.3 2.3E+02 0.005 28.5 9.3 102 118-219 134-272 (305)
342 PRK01156 chromosome segregatio 39.2 3.2E+02 0.007 29.8 11.3 25 131-155 163-187 (895)
343 PF15290 Syntaphilin: Golgi-lo 39.2 3E+02 0.0066 27.6 10.0 49 154-202 88-143 (305)
344 cd07621 BAR_SNX5_6 The Bin/Amp 39.1 1.3E+02 0.0029 28.4 7.4 77 112-191 48-125 (219)
345 TIGR02680 conserved hypothetic 39.1 4.8E+02 0.01 30.7 13.1 43 164-206 923-965 (1353)
346 PF04906 Tweety: Tweety; Inte 39.1 3.1E+02 0.0067 27.9 10.5 87 94-182 73-162 (406)
347 TIGR01005 eps_transp_fam exopo 38.9 5.2E+02 0.011 27.7 13.7 129 120-268 285-428 (754)
348 PF06120 Phage_HK97_TLTM: Tail 38.9 4.1E+02 0.0089 26.5 12.4 31 170-200 142-172 (301)
349 PRK15396 murein lipoprotein; P 38.8 92 0.002 25.2 5.4 35 146-180 30-64 (78)
350 PRK10920 putative uroporphyrin 38.8 88 0.0019 32.0 6.6 90 82-175 35-126 (390)
351 TIGR03007 pepcterm_ChnLen poly 38.8 2.1E+02 0.0045 28.8 9.2 31 118-148 156-186 (498)
352 TIGR02132 phaR_Bmeg polyhydrox 38.8 1.4E+02 0.0031 28.0 7.3 19 166-184 111-129 (189)
353 PF05266 DUF724: Protein of un 38.6 3.2E+02 0.0069 25.2 9.8 15 56-70 48-62 (190)
354 PF09403 FadA: Adhesion protei 38.5 2.7E+02 0.0059 24.3 11.9 85 119-203 23-113 (126)
355 cd07647 F-BAR_PSTPIP The F-BAR 38.5 3.3E+02 0.007 25.2 10.9 41 114-154 97-137 (239)
356 PF12777 MT: Microtubule-bindi 38.5 2.4E+02 0.0052 27.7 9.3 9 96-104 194-202 (344)
357 cd04786 HTH_MerR-like_sg7 Heli 38.4 1E+02 0.0023 26.4 6.1 14 150-163 53-66 (131)
358 PF05377 FlaC_arch: Flagella a 38.2 82 0.0018 24.2 4.8 8 149-156 8-15 (55)
359 PRK11115 transcriptional regul 38.1 3E+02 0.0064 24.7 9.3 46 116-161 20-65 (236)
360 KOG1961 Vacuolar sorting prote 38.0 1.4E+02 0.003 32.8 8.0 53 145-197 72-124 (683)
361 PRK11085 magnesium/nickel/coba 38.0 4.1E+02 0.0088 26.2 11.8 22 119-140 142-163 (316)
362 PF09763 Sec3_C: Exocyst compl 38.0 1.7E+02 0.0036 31.3 8.8 68 133-200 8-75 (701)
363 PF07106 TBPIP: Tat binding pr 37.9 94 0.002 27.2 5.9 60 120-183 76-137 (169)
364 KOG4559 Uncharacterized conser 37.9 1.1E+02 0.0024 26.5 6.1 49 120-168 58-106 (120)
365 PRK11677 hypothetical protein; 37.9 2.2E+02 0.0047 25.2 8.0 42 133-174 32-73 (134)
366 KOG3758 Uncharacterized conser 37.8 3E+02 0.0065 30.3 10.5 80 118-200 51-130 (655)
367 PF12352 V-SNARE_C: Snare regi 37.7 1.7E+02 0.0036 21.6 7.7 34 156-196 30-63 (66)
368 PF05384 DegS: Sensor protein 37.6 1.5E+02 0.0033 26.7 7.3 48 142-189 99-146 (159)
369 PF04124 Dor1: Dor1-like famil 37.5 4E+02 0.0086 26.0 11.1 67 138-204 18-88 (338)
370 COG3352 FlaC Putative archaeal 37.3 2E+02 0.0044 26.3 7.9 80 109-189 62-142 (157)
371 COG2433 Uncharacterized conser 37.2 2.3E+02 0.0049 31.2 9.5 72 130-201 418-492 (652)
372 COG1579 Zn-ribbon protein, pos 37.2 3.9E+02 0.0085 25.8 12.3 26 152-177 107-132 (239)
373 PF10186 Atg14: UV radiation r 37.2 3.3E+02 0.0071 24.9 13.3 46 145-190 60-105 (302)
374 PF08702 Fib_alpha: Fibrinogen 37.1 3E+02 0.0064 24.3 12.2 44 135-178 23-66 (146)
375 PF06825 HSBP1: Heat shock fac 36.9 1E+02 0.0022 23.5 5.1 33 130-162 10-42 (54)
376 PF08172 CASP_C: CASP C termin 36.9 1.1E+02 0.0023 29.4 6.4 44 134-177 79-122 (248)
377 COG5665 NOT5 CCR4-NOT transcri 36.8 3.1E+02 0.0068 28.9 10.0 44 121-170 117-160 (548)
378 PRK04863 mukB cell division pr 36.7 5.6E+02 0.012 30.8 13.2 15 56-70 235-249 (1486)
379 PRK13169 DNA replication intia 36.6 1.4E+02 0.003 25.6 6.5 32 117-148 2-33 (110)
380 PHA00276 phage lambda Rz-like 36.6 1.6E+02 0.0034 26.7 7.0 31 156-186 50-80 (144)
381 KOG3595 Dyneins, heavy chain [ 36.3 3.3E+02 0.0072 32.1 11.4 20 109-128 893-912 (1395)
382 PRK10807 paraquat-inducible pr 36.3 1.2E+02 0.0025 32.1 7.2 22 136-157 438-459 (547)
383 PF02520 DUF148: Domain of unk 35.9 1.2E+02 0.0026 24.9 5.8 13 116-128 29-41 (113)
384 PF10191 COG7: Golgi complex c 35.9 3.2E+02 0.007 30.1 10.6 64 123-186 38-101 (766)
385 PRK04654 sec-independent trans 35.8 3.3E+02 0.0071 26.2 9.3 33 119-151 23-55 (214)
386 PF02388 FemAB: FemAB family; 35.8 68 0.0015 32.2 5.2 35 114-148 233-267 (406)
387 PF12128 DUF3584: Protein of u 35.8 3.8E+02 0.0083 30.9 11.6 84 122-205 287-381 (1201)
388 COG4477 EzrA Negative regulato 35.8 3.9E+02 0.0085 29.0 10.8 79 98-177 236-338 (570)
389 PHA03395 p10 fibrous body prot 35.7 1.5E+02 0.0031 24.8 6.2 22 122-143 10-31 (87)
390 PTZ00446 vacuolar sorting prot 35.6 2.4E+02 0.0053 26.2 8.4 33 130-164 111-143 (191)
391 PF11802 CENP-K: Centromere-as 35.5 4.4E+02 0.0094 26.1 10.4 113 56-206 57-170 (268)
392 PLN02678 seryl-tRNA synthetase 35.5 3.8E+02 0.0082 27.9 10.6 86 131-218 14-106 (448)
393 PF10152 DUF2360: Predicted co 35.5 97 0.0021 27.2 5.6 28 176-203 21-48 (148)
394 PF12329 TMF_DNA_bd: TATA elem 35.3 2.2E+02 0.0048 22.4 8.5 63 154-216 4-66 (74)
395 PF10267 Tmemb_cc2: Predicted 35.3 5.2E+02 0.011 26.7 13.1 33 138-170 223-256 (395)
396 KOG0978 E3 ubiquitin ligase in 35.2 4.1E+02 0.009 29.5 11.2 84 119-202 534-620 (698)
397 PF00261 Tropomyosin: Tropomyo 35.2 3.7E+02 0.008 24.9 12.9 71 117-187 79-159 (237)
398 PF05478 Prominin: Prominin; 35.1 3.5E+02 0.0077 29.8 10.8 34 113-146 159-196 (806)
399 cd00179 SynN Syntaxin N-termin 35.0 1E+02 0.0022 25.7 5.5 16 188-203 53-68 (151)
400 PRK12482 flagellar motor prote 35.0 2.2E+02 0.0047 28.0 8.3 93 89-183 5-106 (287)
401 smart00298 CHROMO Chromatin or 34.9 46 0.001 22.9 2.9 24 100-123 19-42 (55)
402 PF00957 Synaptobrevin: Synapt 34.9 2.2E+02 0.0048 22.2 9.6 19 128-146 8-26 (89)
403 KOG3990 Uncharacterized conser 34.9 1.3E+02 0.0029 29.8 6.8 52 149-201 233-285 (305)
404 PLN03094 Substrate binding sub 34.4 1.2E+02 0.0026 30.9 6.6 13 30-42 233-245 (370)
405 KOG1298 Squalene monooxygenase 34.3 14 0.0003 38.6 0.1 18 4-21 48-69 (509)
406 KOG0630 Predicted pyridoxal-de 34.3 2.1E+02 0.0046 31.3 8.6 37 238-274 787-827 (838)
407 TIGR03752 conj_TIGR03752 integ 34.3 2.7E+02 0.0059 29.5 9.3 56 141-202 87-142 (472)
408 cd07649 F-BAR_GAS7 The F-BAR ( 34.2 4E+02 0.0088 25.1 12.4 109 114-222 98-212 (233)
409 PF06705 SF-assemblin: SF-asse 34.1 3.9E+02 0.0084 24.9 12.8 36 119-154 88-123 (247)
410 PLN02320 seryl-tRNA synthetase 34.0 1.4E+02 0.0031 31.6 7.4 34 185-218 132-165 (502)
411 PRK07739 flgK flagellar hook-a 33.8 3.3E+02 0.0073 28.2 9.9 56 116-171 139-194 (507)
412 PF05508 Ran-binding: RanGTP-b 33.8 2.6E+02 0.0056 28.1 8.7 47 115-161 15-69 (302)
413 KOG4674 Uncharacterized conser 33.7 6.5E+02 0.014 31.1 13.1 77 120-199 777-853 (1822)
414 PF06013 WXG100: Proteins of 1 33.7 1.8E+02 0.004 20.9 9.6 28 132-159 9-36 (86)
415 KOG0804 Cytoplasmic Zn-finger 33.6 4.2E+02 0.009 28.3 10.4 75 126-203 367-441 (493)
416 PHA03332 membrane glycoprotein 33.5 4.3E+02 0.0093 31.2 11.2 38 161-198 922-963 (1328)
417 PF04977 DivIC: Septum formati 33.3 1.3E+02 0.0028 22.4 5.2 30 145-174 21-50 (80)
418 PF15112 DUF4559: Domain of un 33.3 1E+02 0.0022 31.0 5.8 75 115-189 203-284 (307)
419 PF02181 FH2: Formin Homology 33.2 2.8E+02 0.0061 26.8 8.8 65 157-221 276-347 (370)
420 PF08614 ATG16: Autophagy prot 33.2 2.6E+02 0.0056 25.2 8.0 52 137-188 119-170 (194)
421 TIGR03007 pepcterm_ChnLen poly 33.1 5.2E+02 0.011 26.0 11.4 15 56-70 166-180 (498)
422 PF13874 Nup54: Nucleoporin co 33.0 1.7E+02 0.0036 25.3 6.5 69 119-187 54-125 (141)
423 COG0497 RecN ATPase involved i 33.0 2.1E+02 0.0046 30.8 8.5 182 32-228 189-381 (557)
424 PF14182 YgaB: YgaB-like prote 32.9 2.8E+02 0.0061 22.9 7.5 47 147-193 13-64 (79)
425 PF04678 DUF607: Protein of un 32.9 1.2E+02 0.0026 27.3 5.8 51 121-172 38-88 (180)
426 PF14257 DUF4349: Domain of un 32.8 1.3E+02 0.0028 28.0 6.3 27 167-193 167-193 (262)
427 PRK06665 flgK flagellar hook-a 32.7 3.3E+02 0.0072 29.2 10.0 59 116-174 139-197 (627)
428 PRK05683 flgK flagellar hook-a 32.4 3.7E+02 0.0081 29.4 10.3 59 116-174 127-185 (676)
429 cd07630 BAR_SNX_like The Bin/A 32.4 2.1E+02 0.0046 26.3 7.5 80 112-191 28-108 (198)
430 KOG4677 Golgi integral membran 31.8 4.8E+02 0.01 28.1 10.5 74 134-207 249-347 (554)
431 PF06825 HSBP1: Heat shock fac 31.6 1.4E+02 0.003 22.7 5.1 38 125-162 12-49 (54)
432 PRK07191 flgK flagellar hook-a 31.5 3.9E+02 0.0086 27.3 9.9 37 116-152 127-163 (456)
433 cd07307 BAR The Bin/Amphiphysi 31.5 2.9E+02 0.0063 22.6 10.2 26 170-195 95-120 (194)
434 PF12795 MscS_porin: Mechanose 31.4 4.2E+02 0.0092 24.5 10.1 55 146-200 83-137 (240)
435 PRK13169 DNA replication intia 31.3 1.1E+02 0.0023 26.3 5.0 53 143-195 3-55 (110)
436 PF05911 DUF869: Plant protein 31.3 4.2E+02 0.009 29.7 10.6 91 132-225 29-120 (769)
437 PHA02414 hypothetical protein 31.2 1.4E+02 0.0029 25.8 5.5 66 146-221 9-74 (111)
438 COG1392 Phosphate transport re 31.2 4.5E+02 0.0097 24.7 10.6 41 185-225 149-198 (217)
439 PF05667 DUF812: Protein of un 31.2 3.9E+02 0.0084 28.9 10.1 37 149-185 343-379 (594)
440 PF03908 Sec20: Sec20; InterP 31.1 2.7E+02 0.0059 22.1 9.2 74 142-216 2-75 (92)
441 PF03962 Mnd1: Mnd1 family; I 31.1 4.1E+02 0.009 24.2 9.9 32 113-144 66-97 (188)
442 cd07655 F-BAR_PACSIN The F-BAR 31.0 4.6E+02 0.0099 24.7 9.9 33 117-149 113-145 (258)
443 PF13747 DUF4164: Domain of un 31.0 2.9E+02 0.0064 22.5 10.0 51 165-215 35-85 (89)
444 PF02346 Vac_Fusion: Chordopox 30.8 1.6E+02 0.0034 22.7 5.3 51 150-200 3-53 (57)
445 KOG0018 Structural maintenance 30.7 3.6E+02 0.0079 31.5 10.1 86 110-204 668-753 (1141)
446 PF13863 DUF4200: Domain of un 30.7 3E+02 0.0065 22.5 10.7 81 125-205 23-103 (126)
447 PRK15396 murein lipoprotein; P 30.7 1.7E+02 0.0038 23.7 5.8 7 208-214 64-70 (78)
448 PF15079 DUF4546: Domain of un 30.7 2.3E+02 0.005 26.7 7.3 55 144-208 50-104 (205)
449 cd00176 SPEC Spectrin repeats, 30.7 3.1E+02 0.0068 22.7 9.0 51 173-224 76-126 (213)
450 KOG0517 Beta-spectrin [Cytoske 30.6 3E+02 0.0065 34.3 9.7 72 136-208 918-1009(2473)
451 KOG2196 Nuclear porin [Nuclear 30.5 2.2E+02 0.0049 27.9 7.5 30 128-157 128-157 (254)
452 KOG4670 Uncharacterized conser 30.5 27 0.00059 37.3 1.5 82 134-218 368-451 (602)
453 KOG0963 Transcription factor/C 30.4 5.2E+02 0.011 28.5 10.8 74 131-204 179-263 (629)
454 PRK10778 dksA RNA polymerase-b 30.3 1.2E+02 0.0026 27.0 5.4 47 105-151 7-56 (151)
455 PF15070 GOLGA2L5: Putative go 30.3 7.4E+02 0.016 27.0 12.9 23 139-161 41-63 (617)
456 PF03961 DUF342: Protein of un 30.2 2.5E+02 0.0054 28.5 8.2 25 121-145 332-356 (451)
457 COG5185 HEC1 Protein involved 30.2 5.8E+02 0.013 27.7 10.9 92 126-218 274-375 (622)
458 PF10224 DUF2205: Predicted co 30.2 1.6E+02 0.0034 24.0 5.5 42 185-226 25-66 (80)
459 PF14728 PHTB1_C: PTHB1 C-term 30.1 4.9E+02 0.011 26.5 10.2 77 115-195 210-294 (377)
460 PF13514 AAA_27: AAA domain 30.0 3E+02 0.0065 31.3 9.5 92 137-233 892-983 (1111)
461 PRK09458 pspB phage shock prot 30.0 36 0.00079 27.6 1.8 44 113-159 24-67 (75)
462 COG1340 Uncharacterized archae 29.9 5.8E+02 0.013 25.5 12.6 70 132-201 53-125 (294)
463 PF05278 PEARLI-4: Arabidopsis 29.8 5.6E+02 0.012 25.3 12.4 60 164-223 202-261 (269)
464 COG4026 Uncharacterized protei 29.8 5.6E+02 0.012 25.3 10.8 51 174-224 154-204 (290)
465 COG4980 GvpP Gas vesicle prote 29.8 3.8E+02 0.0081 23.3 8.9 19 178-196 92-110 (115)
466 PF05276 SH3BP5: SH3 domain-bi 29.6 5.2E+02 0.011 24.9 10.3 82 122-203 20-111 (239)
467 KOG3091 Nuclear pore complex, 29.3 2.4E+02 0.0052 30.2 8.0 64 144-207 337-400 (508)
468 PRK05431 seryl-tRNA synthetase 29.2 1.9E+02 0.0041 29.5 7.2 72 149-220 29-103 (425)
469 KOG0977 Nuclear envelope prote 29.1 4.7E+02 0.01 28.3 10.2 94 110-203 86-189 (546)
470 COG5173 SEC6 Exocyst complex s 29.1 7E+02 0.015 27.7 11.4 72 147-221 35-108 (742)
471 PF10212 TTKRSYEDQ: Predicted 29.0 4.4E+02 0.0095 28.4 9.9 38 142-179 414-451 (518)
472 COG2096 cob(I)alamin adenosylt 29.0 1.4E+02 0.0031 27.8 5.7 63 132-204 38-102 (184)
473 KOG0977 Nuclear envelope prote 29.0 3.6E+02 0.0078 29.1 9.3 75 116-190 103-190 (546)
474 cd00089 HR1 Protein kinase C-r 28.9 2.6E+02 0.0057 21.3 6.6 59 143-203 4-62 (72)
475 PRK00290 dnaK molecular chaper 28.8 4E+02 0.0086 28.2 9.7 68 136-205 522-594 (627)
476 KOG0979 Structural maintenance 28.8 5.2E+02 0.011 30.1 10.9 37 166-202 294-330 (1072)
477 smart00397 t_SNARE Helical reg 28.8 2.1E+02 0.0045 20.0 7.0 25 148-172 12-36 (66)
478 KOG0811 SNARE protein PEP12/VA 28.7 2.5E+02 0.0053 27.6 7.5 61 160-220 171-235 (269)
479 PRK09841 cryptic autophosphory 28.7 7.8E+02 0.017 26.7 12.9 22 124-145 268-289 (726)
480 PF05055 DUF677: Protein of un 28.5 3.7E+02 0.0081 27.0 8.9 105 92-205 212-317 (336)
481 PF05164 ZapA: Cell division p 28.4 1.7E+02 0.0036 22.4 5.2 14 145-158 76-89 (89)
482 PF07851 TMPIT: TMPIT-like pro 28.4 2.8E+02 0.0061 28.0 8.1 50 132-181 9-58 (330)
483 KOG2911 Uncharacterized conser 28.3 5.8E+02 0.013 27.0 10.4 84 120-204 237-355 (439)
484 cd07623 BAR_SNX1_2 The Bin/Amp 28.2 3.5E+02 0.0076 24.9 8.2 122 55-195 16-142 (224)
485 PRK08147 flgK flagellar hook-a 28.2 4.6E+02 0.01 27.3 9.9 58 116-173 128-185 (547)
486 COG4064 MtrG Tetrahydromethano 28.1 93 0.002 25.3 3.8 27 183-216 15-41 (75)
487 COG0598 CorA Mg2+ and Co2+ tra 28.0 1.4E+02 0.003 28.8 5.8 72 130-201 180-252 (322)
488 PRK01026 tetrahydromethanopter 28.0 62 0.0014 26.4 2.8 23 183-212 15-37 (77)
489 PRK09303 adaptive-response sen 28.0 1.3E+02 0.0028 29.1 5.6 13 58-70 29-41 (380)
490 PF10046 BLOC1_2: Biogenesis o 27.9 3.4E+02 0.0073 22.2 11.0 12 213-224 82-93 (99)
491 KOG0946 ER-Golgi vesicle-tethe 27.9 1.4E+02 0.003 33.9 6.2 81 130-210 809-889 (970)
492 COG0172 SerS Seryl-tRNA synthe 27.8 5.4E+02 0.012 26.9 10.1 96 118-213 8-105 (429)
493 PHA03332 membrane glycoprotein 27.7 8.4E+02 0.018 29.0 12.2 119 121-240 910-1029(1328)
494 PF12329 TMF_DNA_bd: TATA elem 27.7 3E+02 0.0066 21.6 6.7 60 144-203 15-74 (74)
495 PF10828 DUF2570: Protein of u 27.6 3.6E+02 0.0078 22.4 7.4 60 146-205 23-82 (110)
496 PF07544 Med9: RNA polymerase 27.5 1.3E+02 0.0028 24.0 4.6 74 112-186 10-83 (83)
497 PF14661 HAUS6_N: HAUS augmin- 27.5 5.2E+02 0.011 24.2 9.7 87 121-207 144-245 (247)
498 PRK11091 aerobic respiration c 27.3 6.9E+02 0.015 26.4 11.1 90 113-202 72-164 (779)
499 PF13166 AAA_13: AAA domain 27.3 7.5E+02 0.016 26.0 12.7 96 121-216 375-471 (712)
500 TIGR03017 EpsF chain length de 27.2 6.2E+02 0.013 25.0 11.1 86 114-203 284-369 (444)
No 1
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=100.00 E-value=8.4e-59 Score=394.06 Aligned_cols=120 Identities=48% Similarity=0.775 Sum_probs=116.4
Q ss_pred chHHH-HHHHhhhheeeEEeccCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHH
Q 020751 87 KKYGV-IVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQ 165 (322)
Q Consensus 87 ~~y~l-~a~iGavGYgYmwWKGwsfSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~ 165 (322)
..|++ +|++||+|||||||||||||||||||||||+|||++|+|||||||++|++|||||+||||+||+|||+|+|+++
T Consensus 6 ~~~i~paa~~gavGY~Y~wwKGws~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~ 85 (126)
T PF07889_consen 6 SSLIVPAAAIGAVGYGYMWWKGWSFSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISK 85 (126)
T ss_pred cchhhHHHHHHHHHheeeeecCCchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 34455 68999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020751 166 ATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 206 (322)
Q Consensus 166 ~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQ 206 (322)
+|++||+++++|+++|++|+++||++|++||+||++||+||
T Consensus 86 ~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~~Q 126 (126)
T PF07889_consen 86 QIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEEKQ 126 (126)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999998
No 2
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=96.93 E-value=0.0018 Score=53.77 Aligned_cols=88 Identities=17% Similarity=0.329 Sum_probs=44.6
Q ss_pred HHHHHHHhhhheeeEEeccCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH-
Q 020751 89 YGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT- 167 (322)
Q Consensus 89 y~l~a~iGavGYgYmwWKGwsfSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i- 167 (322)
++++.++.+++|++.||+ ++- =||+|..+.. |.+|+++.|.++++...-.+.+
T Consensus 9 w~ii~a~~~~~~~~~~~~---l~~-~~a~~~~~~~----------------------l~~~~~~~~~Rl~~lE~~l~~LP 62 (106)
T PF10805_consen 9 WGIIWAVFGIAGGIFWLW---LRR-TYAKREDIEK----------------------LEERLDEHDRRLQALETKLEHLP 62 (106)
T ss_pred cHHHHHHHHHHHHHHHHH---HHH-hhccHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHhCC
Confidence 344555556777777774 222 3777655543 2333333444444433333343
Q ss_pred -HHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751 168 -QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 202 (322)
Q Consensus 168 -~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 202 (322)
+++|..++..++++.+|++.+...+.+++-.++.+
T Consensus 63 t~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 63 TRDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555555554444433
No 3
>PRK10884 SH3 domain-containing protein; Provisional
Probab=95.93 E-value=0.27 Score=45.56 Aligned_cols=99 Identities=13% Similarity=0.246 Sum_probs=74.5
Q ss_pred heeeEEe----ccCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 020751 99 GYGYVWW----KGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 174 (322)
Q Consensus 99 GYgYmwW----KGwsfSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v 174 (322)
||+++.- .|| +.+=+-.+..++..-+..+-++|+.+.+.|+.+...+.+|-..+..++++.......+++|-..+
T Consensus 66 ~w~~Vr~~~G~~GW-V~~~~Ls~~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L 144 (206)
T PRK10884 66 NYAQIRDSKGRTAW-IPLKQLSTTPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKL 144 (206)
T ss_pred CEEEEEeCCCCEEe-EEHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888873 378 55555566778999999999999999999999999999999999888888776666666665555
Q ss_pred hcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020751 175 RGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 205 (322)
Q Consensus 175 ~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~k 205 (322)
+ .+++..+.-+..|+.+++.+..+
T Consensus 145 ~-------~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 145 K-------NQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred H-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 45555666666666777666654
No 4
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=95.77 E-value=0.077 Score=52.31 Aligned_cols=10 Identities=40% Similarity=0.956 Sum_probs=7.4
Q ss_pred hhhheeeEEe
Q 020751 96 VAVGYGYVWW 105 (322)
Q Consensus 96 GavGYgYmwW 105 (322)
.++|+||.||
T Consensus 41 ~alg~~~~~~ 50 (372)
T PF04375_consen 41 LALGAGGWYW 50 (372)
T ss_pred HHHHHHHHHH
Confidence 6678887767
No 5
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.28 E-value=0.059 Score=52.71 Aligned_cols=102 Identities=15% Similarity=0.314 Sum_probs=50.3
Q ss_pred HHHHHHH---HHHHHhcC-CCceEEEeCCC----------CCCCCchHHH-HHHHhhhhee-eEEeccCCcCchhhhhhh
Q 020751 56 LLAEVSS---VQQELSHV-PRSVIIETSSG----------SGTGAKKYGV-IVVIVAVGYG-YVWWKGWKLPDMMFATRR 119 (322)
Q Consensus 56 L~aQV~~---LaqElr~L-sR~ITVvn~~s----------sg~gg~~y~l-~a~iGavGYg-YmwWKGwsfSDlMfVTKR 119 (322)
|.-..++ .++|++.. ..+-+|+-++. ..+-++-|++ +++.+++-|+ |-.||-| +-=+||.-.+
T Consensus 39 I~eAfk~~gi~~~d~s~~~p~~~~~~~~~p~~~~~~P~~~~~~rwrdy~vmAvi~aGi~y~~y~~~K~Y-V~P~~l~~~~ 117 (300)
T KOG2629|consen 39 IQEAFKRDGIPAQDVSKQIPTANQVVSGGPPLLIIQPQQNVLRRWRDYFVMAVILAGIAYAAYRFVKSY-VLPRFLGESK 117 (300)
T ss_pred HHHHHHhcCCccccccccCCCcccccCCCchhhhcCCCccchhhHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHhhCccc
Confidence 5555665 77777755 32222322210 0222446776 4555667774 8889999 4445665544
Q ss_pred h--------HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHH
Q 020751 120 S--------LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVN 158 (322)
Q Consensus 120 n--------MsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klD 158 (322)
+ |.+=...+.|-+.++-+.++..++.++..-+.++..|+
T Consensus 118 ~k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~~qq~Els~~L~ 164 (300)
T KOG2629|consen 118 DKLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLATQQSELSRALA 164 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 33333344444444444444444444433333333333
No 6
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=94.61 E-value=0.23 Score=42.03 Aligned_cols=82 Identities=17% Similarity=0.264 Sum_probs=46.4
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHH
Q 020751 114 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 193 (322)
Q Consensus 114 MfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~ 193 (322)
=|||++-+...=.+--.-|..+-..|... ....+|+-|..+.+.|-|-++..+.++. .-|.-++.|-....
T Consensus 21 ~YVT~kef~efKd~~~q~L~kiE~~~~~l--~qgeqI~kL~e~V~~QGEqIkel~~e~k-------~qgktL~~I~~~L~ 91 (102)
T PF01519_consen 21 KYVTHKEFDEFKDSNNQRLTKIENKLDQL--AQGEQINKLTEKVDKQGEQIKELQVEQK-------AQGKTLQLILKTLQ 91 (102)
T ss_dssp TB-BHHHHHHH---HTTB-BHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhhccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Confidence 39999998866544444455554444432 3444555555555555555555555554 44555666777777
Q ss_pred HHHHHHHHhhh
Q 020751 194 TLESKLIEIEG 204 (322)
Q Consensus 194 ~Le~Ki~~iE~ 204 (322)
.+..+||+||+
T Consensus 92 ~inkRLD~~E~ 102 (102)
T PF01519_consen 92 SINKRLDKMES 102 (102)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHhhccC
Confidence 77788988874
No 7
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=93.48 E-value=3 Score=39.15 Aligned_cols=91 Identities=24% Similarity=0.260 Sum_probs=77.7
Q ss_pred HHHHHHHHHHhHH-HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHH
Q 020751 121 LSDACNSVARQLE-DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 199 (322)
Q Consensus 121 MsnAv~svtKqLe-qVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki 199 (322)
|++|...|-.+.+ .+...-..+......+|+.+........+.....++|+.+++..+.....++++++.....||..|
T Consensus 167 L~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l 246 (312)
T PF00038_consen 167 LSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQL 246 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhH
Confidence 8889999888877 445566688888999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhhhHHhH
Q 020751 200 IEIEGKQDITTL 211 (322)
Q Consensus 200 ~~iE~kQd~Tn~ 211 (322)
..++..-+....
T Consensus 247 ~~le~~~~~~~~ 258 (312)
T PF00038_consen 247 RELEQRLDEERE 258 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 988865444433
No 8
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=93.44 E-value=1.3 Score=34.97 Aligned_cols=72 Identities=13% Similarity=0.237 Sum_probs=57.0
Q ss_pred hHHHHHHH---HHHHHHHHHHhHhhhhhhHHHHHHHHHHH--HHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020751 131 QLEDVYSS---ISAAQRQLSSKITSVDRDVNKIVEISQAT--QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 131 qLeqVs~s---LaaaKrhLsqRId~vD~klDeq~eis~~i--~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
.|+++.+. +.....+|..+|+.+..+|+++.++.... -+.+. -..++.+|..+|.+++..+..|..|+..|+
T Consensus 15 ~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~~~~-y~~KL~~ikkrm~~l~~~l~~lk~R~~~L~ 91 (92)
T PF14712_consen 15 DLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFDLDP-YVKKLVNIKKRMSNLHERLQKLKKRADKLQ 91 (92)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444 45567899999999999999999966544 34444 888999999999999999999999998775
No 9
>PHA02562 46 endonuclease subunit; Provisional
Probab=93.10 E-value=1 Score=45.25 Aligned_cols=86 Identities=12% Similarity=0.171 Sum_probs=62.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020751 127 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 206 (322)
Q Consensus 127 svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQ 206 (322)
.+..++++....+...++.+...|+.+..++++.....+.++.++..++.++.+++.+++.+...+..++.++..++.+-
T Consensus 192 ~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~i~~~~~~L~~l~~~~~~~~~~l 271 (562)
T PHA02562 192 HIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEEAKTIKAEIEELTDELLNLVMDIEDPSAALNKLNTAAAKIKSKI 271 (562)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555566666677888888888888888888888888888888888888888888888888887777665
Q ss_pred hHHhHH
Q 020751 207 DITTLG 212 (322)
Q Consensus 207 d~Tn~G 212 (322)
+.....
T Consensus 272 ~~~~~~ 277 (562)
T PHA02562 272 EQFQKV 277 (562)
T ss_pred HHHHHH
Confidence 444433
No 10
>PRK11637 AmiB activator; Provisional
Probab=92.99 E-value=1.4 Score=43.96 Aligned_cols=80 Identities=11% Similarity=0.153 Sum_probs=46.0
Q ss_pred HHHHHHHHHHhHHHHHHHHH---HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHH
Q 020751 121 LSDACNSVARQLEDVYSSIS---AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 197 (322)
Q Consensus 121 MsnAv~svtKqLeqVs~sLa---aaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 197 (322)
..+=...+-+++++....+. ..++++.+.|+.++.++++..+-...++.++..+..+++....++...+.-+..++.
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555544444 333445566666666666666666666666666666666666666666655555554
Q ss_pred HHH
Q 020751 198 KLI 200 (322)
Q Consensus 198 Ki~ 200 (322)
.+.
T Consensus 125 ~l~ 127 (428)
T PRK11637 125 LLA 127 (428)
T ss_pred HHH
Confidence 443
No 11
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=92.63 E-value=7 Score=39.57 Aligned_cols=21 Identities=33% Similarity=0.303 Sum_probs=11.0
Q ss_pred ccCcccccccCCCCCCCCCCC
Q 020751 236 RYTLSRTTLELPGITPSSRSG 256 (322)
Q Consensus 236 ~s~s~~~ale~~~~~p~sr~~ 256 (322)
+-.|.+|+=|+||.-|-.|..
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~ 544 (553)
T PRK15048 524 PQTPSRPASEQPPAQPRLRIA 544 (553)
T ss_pred ccccccccccCCccCccCCcC
Confidence 444555565655555544443
No 12
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=92.62 E-value=3 Score=38.78 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=57.1
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020751 130 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 207 (322)
Q Consensus 130 KqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd 207 (322)
+++.++......+..+..+||+..++.-++..+-.++.++|+..++.-.++...-+++.+.-+..|+.+++.++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~ 101 (251)
T PF11932_consen 24 DQAQQVQQQWVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQ 101 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666677788888888888888888888888888777777777777777777777777777777775543
No 13
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=92.25 E-value=0.17 Score=50.09 Aligned_cols=86 Identities=17% Similarity=0.246 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHH---HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHH
Q 020751 120 SLSDACNSVARQLEDVYSSISAAQ---RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 196 (322)
Q Consensus 120 nMsnAv~svtKqLeqVs~sLaaaK---rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le 196 (322)
+|+.++.++...|..++..|++-+ .+|+..|..+...+.+.......++..|..+..|+.+.+.||-...-.|..||
T Consensus 67 ~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe 146 (326)
T PF04582_consen 67 DLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLE 146 (326)
T ss_dssp ---------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHH
Confidence 444455555555555554444433 34566777777777777777777788888888888888888888888888888
Q ss_pred HHHHHhhhh
Q 020751 197 SKLIEIEGK 205 (322)
Q Consensus 197 ~Ki~~iE~k 205 (322)
.++..+|..
T Consensus 147 ~RV~~LEs~ 155 (326)
T PF04582_consen 147 SRVKALESG 155 (326)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhcC
Confidence 888877754
No 14
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=91.63 E-value=3.9 Score=35.66 Aligned_cols=50 Identities=20% Similarity=0.399 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 020751 119 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ 168 (322)
Q Consensus 119 RnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~ 168 (322)
|.+-+-|.-...||.+-.+.++....+|.+||-.+|..+....+....-+
T Consensus 27 ~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erq 76 (131)
T PF10158_consen 27 RPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQ 76 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788999999999999999999999999999999998876655544333
No 15
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=91.53 E-value=3.3 Score=36.11 Aligned_cols=38 Identities=16% Similarity=0.336 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH
Q 020751 135 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT 172 (322)
Q Consensus 135 Vs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~ 172 (322)
+++-+=.|||.|+.=...|..+||+.-|-...+|++++
T Consensus 30 ~sD~M~vTrr~m~~A~~~v~kql~~vs~~l~~tKkhLs 67 (126)
T PF07889_consen 30 FSDLMFVTRRSMSDAVASVSKQLEQVSESLSSTKKHLS 67 (126)
T ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777777777777777666666666654
No 16
>PRK11637 AmiB activator; Provisional
Probab=91.47 E-value=1.7 Score=43.27 Aligned_cols=78 Identities=13% Similarity=0.187 Sum_probs=50.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHH---HhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751 126 NSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 202 (322)
Q Consensus 126 ~svtKqLeqVs~sLaaaKrhLs---qRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 202 (322)
+.+-++|+++...|...++.+. .++..+..++++..+-...+.+++..++.+++.+..+++.++.-+..++.+|+..
T Consensus 43 ~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~ 122 (428)
T PRK11637 43 SDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQ 122 (428)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777766666665 6666666666666666666666666666666666666666666666666666655
Q ss_pred h
Q 020751 203 E 203 (322)
Q Consensus 203 E 203 (322)
+
T Consensus 123 ~ 123 (428)
T PRK11637 123 E 123 (428)
T ss_pred H
Confidence 5
No 17
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=91.12 E-value=2.4 Score=33.53 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=21.9
Q ss_pred hhHHhHHHHHHHHHHHhhcc-CCCccceeccccC
Q 020751 206 QDITTLGVKKLCDRARELEN-GRPTELVQASRYT 238 (322)
Q Consensus 206 Qd~Tn~GV~~LC~f~~~~~~-~~~~~~~Q~~~s~ 238 (322)
-......+..+|.|++..-. +...+++|..++.
T Consensus 84 l~~~l~~l~~~~~~~e~~l~~~~~~e~L~~~~~i 117 (127)
T smart00502 84 LTQKQEKLSHAINFTEEALNSGDPTELLLSKKLI 117 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 33456778888999976544 4666777765543
No 18
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=90.99 E-value=0.96 Score=45.74 Aligned_cols=67 Identities=13% Similarity=0.271 Sum_probs=30.4
Q ss_pred CCchHHH--HHHHhhhheeeEEeccCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 020751 85 GAKKYGV--IVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 159 (322)
Q Consensus 85 gg~~y~l--~a~iGavGYgYmwWKGwsfSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDe 159 (322)
+|..+++ ++++-++|+||-|| |. --.......-+.+..+|+.......+.+..|.+.+..++.++.+
T Consensus 35 ~g~~l~~~aili~la~g~g~y~~-~~-------qq~~~~~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~~ 103 (390)
T PRK10920 35 TGLVLSAVAIAIALAAGAGLYYH-GK-------QQAQNQTATNDALANQLTALQKAQESQKQELEGILKQQAKALDQ 103 (390)
T ss_pred ccHHHHHHHHHHHHHHhhHHHHH-HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 23344777777666 21 11112344444455555555444444444444444444333333
No 19
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=90.77 E-value=11 Score=33.58 Aligned_cols=98 Identities=20% Similarity=0.310 Sum_probs=51.3
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHH----HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchh-hhhhHHHHHH
Q 020751 115 FATRRSLSDACNSVARQLEDVYSSISAAQRQ----LSSKITSVDRDVNKIVEISQATQEEVTILRGRSK-LIGDEFQSVR 189 (322)
Q Consensus 115 fVTKRnMsnAv~svtKqLeqVs~sLaaaKrh----LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls-~ig~Dv~~v~ 189 (322)
||||..+.+..-..-..+.++-..+....|+ |....+.|...+|.. -..+++|+..++.++. .|..+=..++
T Consensus 43 ~vtk~d~e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l---~~~L~~ei~~l~a~~klD~n~eK~~~r 119 (177)
T PF07798_consen 43 LVTKSDLENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKL---RQELREEINKLRAEVKLDLNLEKGRIR 119 (177)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 6888888887777777777777666655554 333333344333332 2345555554444332 1111122444
Q ss_pred HHHHHHHHHHHHhhhhhhHHhHHHHH
Q 020751 190 DIVQTLESKLIEIEGKQDITTLGVKK 215 (322)
Q Consensus 190 ~~V~~Le~Ki~~iE~kQd~Tn~GV~~ 215 (322)
.....+|.||..++.+-+....++..
T Consensus 120 ~e~~~~~~ki~e~~~ki~~ei~~lr~ 145 (177)
T PF07798_consen 120 EEQAKQELKIQELNNKIDTEIANLRT 145 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544444433
No 20
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=90.26 E-value=5 Score=35.08 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=52.7
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020751 145 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 207 (322)
Q Consensus 145 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd 207 (322)
.|+.||+-|...||+...--+.+.+.+.++....+.+..-+..+..-...+|.|++.++.+-.
T Consensus 77 ~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~~ 139 (143)
T PF12718_consen 77 QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKYK 139 (143)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 477788888888888888888888888888888888888888888888888888888876643
No 21
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=89.75 E-value=2.9 Score=44.18 Aligned_cols=88 Identities=17% Similarity=0.286 Sum_probs=69.2
Q ss_pred cCchhhh----hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHH
Q 020751 110 LPDMMFA----TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 185 (322)
Q Consensus 110 fSDlMfV----TKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv 185 (322)
++++.|+ +||||...++ +.+=.....+-+.=+.+..+|+++...++++.+.-..|.+.+...+.+...+-.++
T Consensus 6 L~~~~~~nt~~aRr~LR~~iE---~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~ 82 (618)
T PF06419_consen 6 LSEFGFENTLEARRNLRSDIE---KRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEA 82 (618)
T ss_pred hcccccCCcHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667776 8999876554 55566666666777788889999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHH
Q 020751 186 QSVRDIVQTLESKLI 200 (322)
Q Consensus 186 ~~v~~~V~~Le~Ki~ 200 (322)
+.++.--..+|.|-.
T Consensus 83 ~~L~~~~~~~~~k~~ 97 (618)
T PF06419_consen 83 SELREQKEELELKKK 97 (618)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888755555555543
No 22
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=89.65 E-value=12 Score=32.20 Aligned_cols=15 Identities=7% Similarity=0.337 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhcC
Q 020751 56 LLAEVSSVQQELSHV 70 (322)
Q Consensus 56 L~aQV~~LaqElr~L 70 (322)
+..-++.++++.+.|
T Consensus 45 ~~~~i~~ia~qt~lL 59 (213)
T PF00015_consen 45 ILSLINEIAEQTNLL 59 (213)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHh
Confidence 777777888888777
No 23
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=89.58 E-value=4.4 Score=33.04 Aligned_cols=81 Identities=12% Similarity=0.168 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHH
Q 020751 136 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 215 (322)
Q Consensus 136 s~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~ 215 (322)
..+|.++-+.|.+.|++|+..++.-.+..... .++..++..++.|-..+-+-..+.+.+...+|..|.-....+..
T Consensus 3 ~~~le~al~rL~~aid~LE~~v~~r~~~~~~~----~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~ 78 (89)
T PF13747_consen 3 TYSLEAALTRLEAAIDRLEKAVDRRLERDRKR----DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDS 78 (89)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh----hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777766654433 44445555666666666666666667777777666665555555
Q ss_pred HHHHH
Q 020751 216 LCDRA 220 (322)
Q Consensus 216 LC~f~ 220 (322)
..+-+
T Consensus 79 a~e~I 83 (89)
T PF13747_consen 79 AIETI 83 (89)
T ss_pred HHHHH
Confidence 54444
No 24
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.01 E-value=5.3 Score=45.25 Aligned_cols=98 Identities=15% Similarity=0.207 Sum_probs=79.6
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhH
Q 020751 129 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 208 (322)
Q Consensus 129 tKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~ 208 (322)
-+..++.-+.+...=+...+++...+.|+-+..+-.+.+++||+.-.+.++.+..|++..+..+..++.++.+++..-+-
T Consensus 290 i~~~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~ 369 (1074)
T KOG0250|consen 290 IKKKQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRK 369 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555566667777788888888888888999999999999999999999999999999999999988888
Q ss_pred HhHHHHHHHHHHHhhccC
Q 020751 209 TTLGVKKLCDRARELENG 226 (322)
Q Consensus 209 Tn~GV~~LC~f~~~~~~~ 226 (322)
.-.-+++||.-+..++..
T Consensus 370 ~k~~~d~l~k~I~~~~~~ 387 (1074)
T KOG0250|consen 370 LKKEVDRLEKQIADLEKQ 387 (1074)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888999999888765543
No 25
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=88.25 E-value=16 Score=31.50 Aligned_cols=25 Identities=8% Similarity=0.230 Sum_probs=9.2
Q ss_pred hcchhhhhhHHHHHHHHHHHHHHHH
Q 020751 175 RGRSKLIGDEFQSVRDIVQTLESKL 199 (322)
Q Consensus 175 ~~dls~ig~Dv~~v~~~V~~Le~Ki 199 (322)
...+..|...++.+...+..+...+
T Consensus 134 ~~~l~~i~~~~~~i~~~i~~i~~~~ 158 (213)
T PF00015_consen 134 SESLEEIAESVEEISDSIEEISESA 158 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhhhhHHhhhhHHHHhhH
Confidence 3333333333333333333333333
No 26
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=88.16 E-value=8.4 Score=35.81 Aligned_cols=76 Identities=9% Similarity=0.170 Sum_probs=59.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 020751 125 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 200 (322)
Q Consensus 125 v~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 200 (322)
.....++..+--+.+...|+.|.++|+.+...++....-.+..++.|...+..+..+..+++++..+-..|..=|.
T Consensus 33 ~~~~~~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~ 108 (251)
T PF11932_consen 33 WVQAAQQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLME 108 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666677788889999999999999998888888888888888888888888888888866555555433
No 27
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=87.75 E-value=5 Score=31.66 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHHHHHh
Q 020751 183 DEFQSVRDIVQTLESKLIEI 202 (322)
Q Consensus 183 ~Dv~~v~~~V~~Le~Ki~~i 202 (322)
+.++.+-+.|..++..+..+
T Consensus 68 ~~v~~~~~~v~~~g~~v~~l 87 (90)
T PF06103_consen 68 EKVDPVFEAVADLGESVSEL 87 (90)
T ss_pred HhHHHHHHHHHHHHHHHHHH
Confidence 33444444455555544443
No 28
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=86.92 E-value=13 Score=30.44 Aligned_cols=68 Identities=13% Similarity=0.117 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhh---HHHHHHHHHHHHHHHHHHhhhh
Q 020751 138 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD---EFQSVRDIVQTLESKLIEIEGK 205 (322)
Q Consensus 138 sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~---Dv~~v~~~V~~Le~Ki~~iE~k 205 (322)
-|...-+..+.|...+++.......-.+..+....+++.-+.+|.. .|..+-.+|..||.=..++|.|
T Consensus 25 LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~LE~k 95 (99)
T PF10046_consen 25 LLENMNKATSLKYKKMKDIAAGLEKNLEDLNQKYEELQPYLQQIDQIEEQVTELEQTVYELDEYSKELESK 95 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666666666655555555555444 6666666666666666666654
No 29
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=86.42 E-value=9.9 Score=37.10 Aligned_cols=100 Identities=12% Similarity=0.164 Sum_probs=74.5
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhh-------------
Q 020751 117 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD------------- 183 (322)
Q Consensus 117 TKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~------------- 183 (322)
.-+.+-.=..++..|+|.++..|...+.+|...+..+|.--++..+..+++..-+...+..+..+..
T Consensus 85 ~~~~~~~ky~sv~~qId~I~~~L~~~~~~L~~d~~~L~~l~~~n~~~~~~L~~~I~ag~~~~~~l~~~~~~~~~~~~~~d 164 (333)
T PF05816_consen 85 SLERYFAKYQSVQSQIDKIIAELESGQDELLRDNAMLDQLYEKNWEYYQELEKYIAAGELKLEELEAELLPALQADAEGD 164 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhccccC
Confidence 3344444568999999999999999999999999999988777777766666554444433333332
Q ss_pred -----HHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 020751 184 -----EFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 216 (322)
Q Consensus 184 -----Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~L 216 (322)
.+..+.+.+..||.|+..++-.+.++..+.--+
T Consensus 165 ~~~~q~~~~~~~~l~~leqRi~DL~~~~~va~Q~~pqi 202 (333)
T PF05816_consen 165 QMDAQELADLEQALFRLEQRIQDLQLSRQVAIQTAPQI 202 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 345667788999999999998888888776543
No 30
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=86.29 E-value=13 Score=31.06 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhHHHHHHHH
Q 020751 121 LSDACNSVARQLEDVYSSI 139 (322)
Q Consensus 121 MsnAv~svtKqLeqVs~sL 139 (322)
|.+.+..+..+++.+.+.|
T Consensus 3 l~~~~~~l~~~~~~l~~~l 21 (202)
T PF01442_consen 3 LDDRLDSLSSRTEELEERL 21 (202)
T ss_dssp HHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444333
No 31
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=86.26 E-value=13 Score=32.59 Aligned_cols=6 Identities=17% Similarity=0.396 Sum_probs=2.5
Q ss_pred HHHHHH
Q 020751 215 KLCDRA 220 (322)
Q Consensus 215 ~LC~f~ 220 (322)
+|++.+
T Consensus 176 ~l~~~~ 181 (191)
T PF04156_consen 176 QLEEKI 181 (191)
T ss_pred HHHHHH
Confidence 344433
No 32
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=86.01 E-value=7.9 Score=42.10 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=23.3
Q ss_pred HHHHHHhHHHHHHH-HHHHHHHHHHhHhhhhhhH
Q 020751 125 CNSVARQLEDVYSS-ISAAQRQLSSKITSVDRDV 157 (322)
Q Consensus 125 v~svtKqLeqVs~s-LaaaKrhLsqRId~vD~kl 157 (322)
++++.+|+++|-.. ...++.|+...|++.+..+
T Consensus 189 l~~~~~qi~~l~~~ny~~~~~~v~~~L~~~~~~l 222 (806)
T PF05478_consen 189 LNDTPQQIDHLLVQNYSELKDHVSSDLDNIGSLL 222 (806)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 45566777777776 7777777777777776544
No 33
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=85.85 E-value=16 Score=38.22 Aligned_cols=121 Identities=13% Similarity=0.265 Sum_probs=74.8
Q ss_pred hheeeEEeccCCcCchhhhhh--------------------hhHHHHHHHHHHhHHHHHHHHH---HHHHHHHHhHhhhh
Q 020751 98 VGYGYVWWKGWKLPDMMFATR--------------------RSLSDACNSVARQLEDVYSSIS---AAQRQLSSKITSVD 154 (322)
Q Consensus 98 vGYgYmwWKGwsfSDlMfVTK--------------------RnMsnAv~svtKqLeqVs~sLa---aaKrhLsqRId~vD 154 (322)
-||-=|-=+|..|.++=.-.+ +.....+..+.+++|++|+.|. .||+...+.+..+.
T Consensus 237 ~gy~~m~~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~ 316 (569)
T PRK04778 237 AGYRELVEEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLP 316 (569)
T ss_pred HHHHHHHHcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 355556677888887532222 2334566677888888888876 46777777777777
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcc----------hhhhhhHHHHHHH---------------------HHHHHHHHHHHhh
Q 020751 155 RDVNKIVEISQATQEEVTILRGR----------SKLIGDEFQSVRD---------------------IVQTLESKLIEIE 203 (322)
Q Consensus 155 ~klDeq~eis~~i~~eV~~v~~d----------ls~ig~Dv~~v~~---------------------~V~~Le~Ki~~iE 203 (322)
+.++...+-...+..|+..++.. +..+..+++.+.. ....|..++..++
T Consensus 317 ~~l~~~~e~~~~l~~Ei~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~~~~ysel~e~leel~e~leeie 396 (569)
T PRK04778 317 DFLEHAKEQNKELKEEIDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQEIAYSELQEELEEILKQLEEIE 396 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777776666665 3444444444333 3344555555666
Q ss_pred hhhhHHhHHHHHHHH
Q 020751 204 GKQDITTLGVKKLCD 218 (322)
Q Consensus 204 ~kQd~Tn~GV~~LC~ 218 (322)
..|.--..-|..|+.
T Consensus 397 ~eq~ei~e~l~~Lrk 411 (569)
T PRK04778 397 KEQEKLSEMLQGLRK 411 (569)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666655555555543
No 34
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=85.75 E-value=9.6 Score=39.88 Aligned_cols=51 Identities=6% Similarity=0.090 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020751 156 DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 206 (322)
Q Consensus 156 klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQ 206 (322)
+|.++++-.+++++++..+|.+++.+....+..++.++.||..+.+++..+
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555544444333333344444444444444444443
No 35
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=85.49 E-value=5.2 Score=42.67 Aligned_cols=40 Identities=20% Similarity=0.221 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 020751 136 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR 175 (322)
Q Consensus 136 s~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~ 175 (322)
......+.+.+.+|+..++.++.+...-+.+++..+.++.
T Consensus 373 ~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~L~~~~~~l~ 412 (656)
T PRK06975 373 TEQAQASVHQLDSQFAQLDGKLADAQSAQQALEQQYQDLS 412 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344455566777777777777666666666665555443
No 36
>PHA02562 46 endonuclease subunit; Provisional
Probab=85.44 E-value=13 Score=37.41 Aligned_cols=76 Identities=8% Similarity=0.197 Sum_probs=33.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751 126 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 202 (322)
Q Consensus 126 ~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 202 (322)
+.+.++++.+.+.+...+.... +++.+..++.+........++++.........+..++++++..+..++.++.++
T Consensus 309 ~~l~~~l~~l~~~i~~~~~~~~-~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l 384 (562)
T PHA02562 309 KELQHSLEKLDTAIDELEEIMD-EFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKL 384 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHH
Confidence 3344444444444442222221 233334444444444444444454444555555555555555555555555443
No 37
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.29 E-value=5.9 Score=38.52 Aligned_cols=67 Identities=15% Similarity=0.289 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHH
Q 020751 133 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 199 (322)
Q Consensus 133 eqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki 199 (322)
|.-+..+...++.+...|+.+|.++++...=....++++++.+.++.....||+.+..-+.....++
T Consensus 37 ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l 103 (265)
T COG3883 37 DSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELL 103 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777888888999999999999988888899998888888888888887776655444433
No 38
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=84.95 E-value=16 Score=32.67 Aligned_cols=83 Identities=12% Similarity=0.247 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHH-HHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHH
Q 020751 120 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI-VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 198 (322)
Q Consensus 120 nMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq-~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 198 (322)
.++..+..+-.||..+.+.|...-..+..|++.+-..+++. ..+++.++.|.+.+..++.+.-..|-++......|=..
T Consensus 35 ql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq~~~rneLtnlnsil~nL~ssvTNin~tLnnLl~a 114 (140)
T PF04513_consen 35 QLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQLQDTLRNELTNLNSILNNLTSSVTNINATLNNLLQA 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 35677888888888888888888888888888777777654 46677888888888888777777777766665555555
Q ss_pred HHHh
Q 020751 199 LIEI 202 (322)
Q Consensus 199 i~~i 202 (322)
+.-+
T Consensus 115 ln~l 118 (140)
T PF04513_consen 115 LNNL 118 (140)
T ss_pred HHHh
Confidence 5444
No 39
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=84.78 E-value=4 Score=37.93 Aligned_cols=57 Identities=16% Similarity=0.309 Sum_probs=36.1
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751 146 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 202 (322)
Q Consensus 146 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 202 (322)
+..|+-+|..|+|.+.|.-..+-+.+.+-++--...+.|+..+.+-+..||.|+|.|
T Consensus 77 vA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~ 133 (189)
T TIGR02132 77 VASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKI 133 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666665555555555444555566677777777777777777754
No 40
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=83.87 E-value=4.3 Score=32.73 Aligned_cols=53 Identities=8% Similarity=0.236 Sum_probs=26.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhc
Q 020751 123 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 176 (322)
Q Consensus 123 nAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~ 176 (322)
++++.|..+.+.++..+...+..+ .+++.+..|||.+.+-...+.+.|++++.
T Consensus 11 ~dIk~vd~KVdaLq~~V~~l~~~~-~~v~~l~~klDa~~~~l~~l~~~V~~I~~ 63 (75)
T PF05531_consen 11 QDIKAVDDKVDALQTQVDDLESNL-PDVTELNKKLDAQSAQLTTLNTKVNEIQD 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555554444433 34444555555555555555555544443
No 41
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=83.86 E-value=57 Score=35.92 Aligned_cols=102 Identities=10% Similarity=0.185 Sum_probs=62.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHH
Q 020751 122 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 201 (322)
Q Consensus 122 snAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ 201 (322)
.+-+..+-..+....+.-...|..+..+++.+..++.......+.-++.+ ..+..|+..+..++..-.++|..
T Consensus 372 k~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri-------~~LE~ELr~l~~~A~E~q~~Lns 444 (717)
T PF09730_consen 372 KAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERI-------SELEKELRALSKLAGESQGSLNS 444 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-------HHHHHHHHHHHHHHHhHHHHHHH
Confidence 34444444445555556666677777777777777777665555555544 44455567777777776677766
Q ss_pred hhhhhhHHhHHHHHHHHHHHhhccCCCccc
Q 020751 202 IEGKQDITTLGVKKLCDRARELENGRPTEL 231 (322)
Q Consensus 202 iE~kQd~Tn~GV~~LC~f~~~~~~~~~~~~ 231 (322)
-..-=..--..+.-|+.++ ++-|+-.|+.
T Consensus 445 AQDELvtfSEeLAqLYHHV-C~cNgeTPnR 473 (717)
T PF09730_consen 445 AQDELVTFSEELAQLYHHV-CMCNGETPNR 473 (717)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHccCCCCcc
Confidence 6555444555666666666 5555555554
No 42
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=83.41 E-value=11 Score=30.36 Aligned_cols=63 Identities=17% Similarity=0.255 Sum_probs=45.8
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHH----HHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHH
Q 020751 139 ISAAQRQLSSKITSVDRDVNKIVEISQ----ATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 201 (322)
Q Consensus 139 LaaaKrhLsqRId~vD~klDeq~eis~----~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ 201 (322)
+-++.+++.+|++.=-..|.++.+.++ .++.+...=...+..+..|++.++.-++.|..|+..
T Consensus 16 ~l~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~ 82 (88)
T PF10241_consen 16 ILALQAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAK 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777666654 345555556667778889999999999999888864
No 43
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=83.31 E-value=2.6 Score=34.97 Aligned_cols=55 Identities=22% Similarity=0.344 Sum_probs=46.0
Q ss_pred HHhhhheeeEEeccCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 020751 94 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 173 (322)
Q Consensus 94 ~iGavGYgYmwWKGwsfSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~ 173 (322)
++.-+|.||+=.+- +..|+++|..||+.++..+++..+..+..+++++.
T Consensus 70 v~v~iG~g~~vE~~-------------------------------~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~ 118 (126)
T TIGR00293 70 VLVSIGSGYYVEKD-------------------------------AEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQ 118 (126)
T ss_pred EEEEcCCCEEEEec-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55678999987764 47889999999999999999999999999999888
Q ss_pred hhcchh
Q 020751 174 LRGRSK 179 (322)
Q Consensus 174 v~~dls 179 (322)
+...+.
T Consensus 119 i~~~l~ 124 (126)
T TIGR00293 119 LEQEAQ 124 (126)
T ss_pred HHHHHh
Confidence 766543
No 44
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=83.30 E-value=12 Score=38.66 Aligned_cols=82 Identities=17% Similarity=0.235 Sum_probs=64.2
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 020751 130 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 209 (322)
Q Consensus 130 KqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~T 209 (322)
++|+|....|++.. ++|...+++..+...-.+..+.++..+..-+.++..|++.+++.+..++..|..++..+ ..
T Consensus 38 ~~l~q~q~ei~~~~----~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~-r~ 112 (420)
T COG4942 38 KQLKQIQKEIAALE----KKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQE-RE 112 (420)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHH-HH
Confidence 88888888877654 45566677777777777888888888888888999999999999999999998888766 66
Q ss_pred hHHHHHH
Q 020751 210 TLGVKKL 216 (322)
Q Consensus 210 n~GV~~L 216 (322)
..++...
T Consensus 113 qr~~La~ 119 (420)
T COG4942 113 QRRRLAE 119 (420)
T ss_pred HHHHHHH
Confidence 6665544
No 45
>PRK10884 SH3 domain-containing protein; Provisional
Probab=83.27 E-value=14 Score=34.36 Aligned_cols=70 Identities=10% Similarity=0.247 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 020751 120 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 189 (322)
Q Consensus 120 nMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 189 (322)
.|.+-++.+..+|++.......-+.++.++++..+....+.++--++.++++..++.++....-+.+.++
T Consensus 97 ~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666666666666666666666666666666666666666666666555555444433333333
No 46
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=83.02 E-value=33 Score=34.80 Aligned_cols=61 Identities=15% Similarity=0.179 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHH
Q 020751 133 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 193 (322)
Q Consensus 133 eqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~ 193 (322)
.+.++.+...=.+++.-.+.+....+++.+..+++...+.++...+.++-...+.+...+.
T Consensus 269 ~~~s~~v~~~s~el~~~~~~ls~~~~~qa~~i~~i~~s~eeis~~~~e~~~~~~~~~~~~~ 329 (553)
T PRK15048 269 REGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQASQLAQ 329 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555666666666666666666666665555555555555554444444433
No 47
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=82.92 E-value=5.1 Score=40.07 Aligned_cols=41 Identities=22% Similarity=0.392 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhhcc
Q 020751 185 FQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELEN 225 (322)
Q Consensus 185 v~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~f~~~~~~ 225 (322)
++.++..+..|-.||.+|..+=..|-.=|..+|.=++.+++
T Consensus 59 l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~dIk~LD~ 99 (383)
T PF04100_consen 59 LEEAQEAIQELFEKISEIKSKAEESEQMVQEITRDIKQLDN 99 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444444444444433
No 48
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=82.49 E-value=15 Score=36.79 Aligned_cols=78 Identities=13% Similarity=0.294 Sum_probs=37.4
Q ss_pred chhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhh-------hhhHHHHHHHHHHHHHHHHHhhcchhhhhhH
Q 020751 112 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSV-------DRDVNKIVEISQATQEEVTILRGRSKLIGDE 184 (322)
Q Consensus 112 DlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~v-------D~klDeq~eis~~i~~eV~~v~~dls~ig~D 184 (322)
..+-.||.-|..--+.+++.||.+ .+=.|||.++++.+ -++|.+..+--++...-|++....|.+|.++
T Consensus 234 ~~~~~~~~~L~kl~~~i~~~lekI----~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~Isee 309 (359)
T PF10498_consen 234 SALPETKSQLDKLQQDISKTLEKI----ESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEE 309 (359)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 344445555554444444444333 22344444444433 3334444444444444566666666666666
Q ss_pred HHHHHHHHH
Q 020751 185 FQSVRDIVQ 193 (322)
Q Consensus 185 v~~v~~~V~ 193 (322)
++.+++-+.
T Consensus 310 Le~vK~eme 318 (359)
T PF10498_consen 310 LEQVKQEME 318 (359)
T ss_pred HHHHHHHHH
Confidence 666664433
No 49
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=82.43 E-value=8.9 Score=30.47 Aligned_cols=78 Identities=15% Similarity=0.317 Sum_probs=39.2
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHH
Q 020751 114 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 193 (322)
Q Consensus 114 MfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~ 193 (322)
|+-+++-+.+...-++..+......-...++.+..++++.=.+||=. +++|....+ .-+...+.-+.
T Consensus 1 M~~~~~~~d~~~~~~~~~~~~~~~~~~e~e~~~r~~l~~~l~kldlV------tREEFd~q~-------~~L~~~r~kl~ 67 (79)
T PF04380_consen 1 MQDPNKIFDDLAKQISEALPAAQGPREEIEKNIRARLQSALSKLDLV------TREEFDAQK-------AVLARTREKLE 67 (79)
T ss_pred CCCchhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHCCCC------cHHHHHHHH-------HHHHHHHHHHH
Confidence 44444555555555555555554455555555555555554444422 122222222 22444555556
Q ss_pred HHHHHHHHhhh
Q 020751 194 TLESKLIEIEG 204 (322)
Q Consensus 194 ~Le~Ki~~iE~ 204 (322)
.||.||..+|.
T Consensus 68 ~LEarl~~LE~ 78 (79)
T PF04380_consen 68 ALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHhc
Confidence 66666666664
No 50
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=82.42 E-value=21 Score=33.14 Aligned_cols=69 Identities=13% Similarity=0.261 Sum_probs=50.7
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHH
Q 020751 147 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 215 (322)
Q Consensus 147 sqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~ 215 (322)
-.||+.|..++.+...+.........++...+..+-.|++....-+..+|.|+..++..-.....-+.-
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~ 159 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKS 159 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHH
Confidence 456666667777777777777777788888888888888888888888888888887655444444433
No 51
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=82.33 E-value=33 Score=29.98 Aligned_cols=51 Identities=20% Similarity=0.242 Sum_probs=19.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020751 153 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 153 vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
+-..+++..+....+.+.+..+...+.+....++.....+..+..++..+.
T Consensus 37 i~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 87 (262)
T smart00283 37 VAANADEIAATAQSAAEAAEEGREAVEDAITAMDQIREVVEEAVSAVEELE 87 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333333333333333334444333
No 52
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=82.30 E-value=24 Score=36.82 Aligned_cols=18 Identities=11% Similarity=0.313 Sum_probs=13.4
Q ss_pred hHHHHHHHHHHHHHHhcC
Q 020751 53 FNDLLAEVSSVQQELSHV 70 (322)
Q Consensus 53 ~~dL~aQV~~LaqElr~L 70 (322)
|.++..+|..|+++|.+.
T Consensus 251 ~~~i~~~i~~l~~~i~~~ 268 (569)
T PRK04778 251 HLDIEKEIQDLKEQIDEN 268 (569)
T ss_pred CCChHHHHHHHHHHHHHH
Confidence 334888888888888873
No 53
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=82.08 E-value=9.4 Score=31.75 Aligned_cols=65 Identities=11% Similarity=0.235 Sum_probs=48.8
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhh--hhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 020751 147 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI--GDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 218 (322)
Q Consensus 147 sqRId~vD~klDeq~eis~~i~~eV~~v~~dls~i--g~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~ 218 (322)
..+++.+++++++ ..+-++.+..++.+. .+|+..++-.+..++++++.+++.=+--++-+.+|.+
T Consensus 34 ~~~~~~l~~~~~~-------~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 34 REDIEKLEERLDE-------HDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666654 456677777777777 8888888888888999999998887777777777754
No 54
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=81.44 E-value=27 Score=36.25 Aligned_cols=94 Identities=17% Similarity=0.320 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHhHHHHHHH------------HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH-----hhcchhhh
Q 020751 119 RSLSDACNSVARQLEDVYSS------------ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI-----LRGRSKLI 181 (322)
Q Consensus 119 RnMsnAv~svtKqLeqVs~s------------LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~-----v~~dls~i 181 (322)
+.+..-++++-.++.+|.++ +.+.|++|+..-|+|=.|.|+.+.+.+.+|++|.. ....++.+
T Consensus 176 ~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~~~qLe~v 255 (426)
T smart00806 176 TEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEALRKDVAQRGVRPSKKQLETV 255 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 34555566666666777654 55679999999999999999999999999999743 22345566
Q ss_pred hhHHHHHHHHHH---------------HHHHHHHHhhhhhhHHhHH
Q 020751 182 GDEFQSVRDIVQ---------------TLESKLIEIEGKQDITTLG 212 (322)
Q Consensus 182 g~Dv~~v~~~V~---------------~Le~Ki~~iE~kQd~Tn~G 212 (322)
..|++....-+. .||.-|+.|..-|+|=|.=
T Consensus 256 ~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcEEqqfL~lQ 301 (426)
T smart00806 256 QKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCEEQQFLTLQ 301 (426)
T ss_pred HHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666655554444 4667778888888876653
No 55
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=81.27 E-value=7.1 Score=35.49 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=49.0
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020751 140 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 204 (322)
Q Consensus 140 aaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~ 204 (322)
..-..-|..+.+.|+.++++..+.-+...|+|--. .|=+=+.+|+.+...+..||.+|..+|.
T Consensus 84 ~~R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsY--qll~hr~e~ee~~~~l~~le~~~~~~e~ 146 (175)
T PRK13182 84 SVDFEQLEAQLNTITRRLDELERQLQQKADDVVSY--QLLQHRREMEEMLERLQKLEARLKKLEP 146 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH--HHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455677777777788888888888888888443 4467788999999999999999999764
No 56
>PRK09039 hypothetical protein; Validated
Probab=81.17 E-value=20 Score=35.48 Aligned_cols=87 Identities=9% Similarity=0.234 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHH-------HHHHHHHHHHhhh
Q 020751 132 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI-------VQTLESKLIEIEG 204 (322)
Q Consensus 132 LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~-------V~~Le~Ki~~iE~ 204 (322)
|+..++....+..++..|+..+.++|++.+..+....-+|..++..++.+..-+..++.. -.....||+.++.
T Consensus 100 Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~ 179 (343)
T PRK09039 100 LQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGR 179 (343)
T ss_pred HHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444445577888888888888888887766666555555555444444444444 4444455555554
Q ss_pred hhhHHhHH-HHHHHH
Q 020751 205 KQDITTLG-VKKLCD 218 (322)
Q Consensus 205 kQd~Tn~G-V~~LC~ 218 (322)
.=+.+.+. +..|-+
T Consensus 180 ~L~~a~~~~~~~l~~ 194 (343)
T PRK09039 180 RLNVALAQRVQELNR 194 (343)
T ss_pred HHHHHHHHHHHHHHH
Confidence 44444333 444443
No 57
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=80.62 E-value=51 Score=31.02 Aligned_cols=38 Identities=34% Similarity=0.433 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhH---HhHHHHHHHHHHHh
Q 020751 185 FQSVRDIVQTLESKLIEIEGKQDI---TTLGVKKLCDRARE 222 (322)
Q Consensus 185 v~~v~~~V~~Le~Ki~~iE~kQd~---Tn~GV~~LC~f~~~ 222 (322)
...+++=|..-..||.++|.+|+- .|.=+.-||-+..+
T Consensus 103 a~vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKElcl~LDe 143 (195)
T PF10226_consen 103 ASVMRQEVAQYQQKLKELEDKQEELIRENLELKELCLYLDE 143 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 455666788888899999998864 57788899998855
No 58
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=80.01 E-value=7.8 Score=31.25 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=11.3
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHH
Q 020751 140 SAAQRQLSSKITSVDRDVNKIVEI 163 (322)
Q Consensus 140 aaaKrhLsqRId~vD~klDeq~ei 163 (322)
..++++|..-|+.+.+.|++..+.
T Consensus 38 ~~~~~eL~~~l~~ie~~L~DL~~a 61 (97)
T PF09177_consen 38 KWLKRELRNALQSIEWDLEDLEEA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555544444433
No 59
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=79.91 E-value=33 Score=31.41 Aligned_cols=47 Identities=9% Similarity=0.186 Sum_probs=35.0
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHH
Q 020751 140 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 186 (322)
Q Consensus 140 aaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~ 186 (322)
.....++..|++.+..+++++++-.+..++++.+.+..+..-..++.
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~ 108 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLS 108 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777888888888888888888888888777777777665
No 60
>PRK04406 hypothetical protein; Provisional
Probab=79.61 E-value=8.6 Score=30.55 Aligned_cols=46 Identities=9% Similarity=0.119 Sum_probs=34.3
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHH
Q 020751 141 AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 186 (322)
Q Consensus 141 aaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~ 186 (322)
++...+.+||+.|..++--|....+...+.|++-+..+......+.
T Consensus 4 ~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~ 49 (75)
T PRK04406 4 KTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMK 49 (75)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788999999999999998888888888777766444443333
No 61
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=79.53 E-value=7.6 Score=34.92 Aligned_cols=96 Identities=19% Similarity=0.348 Sum_probs=46.1
Q ss_pred CcCchhhhhhhhHHH---HHHHHHHhHHHHHHHHHHHHHHHHH---hHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhh
Q 020751 109 KLPDMMFATRRSLSD---ACNSVARQLEDVYSSISAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 182 (322)
Q Consensus 109 sfSDlMfVTKRnMsn---Av~svtKqLeqVs~sLaaaKrhLsq---RId~vD~klDeq~eis~~i~~eV~~v~~dls~ig 182 (322)
++.+..+..+.-|+. .+..+..+|-...+.+..-++.+.. +|..+...+....+=.+...+++.+....++.+.
T Consensus 71 ~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~ 150 (194)
T PF08614_consen 71 SLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQ 150 (194)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777766664 4667778888888887777766654 5666666666666666677778888888999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 020751 183 DEFQSVRDIVQTLESKLIEIEG 204 (322)
Q Consensus 183 ~Dv~~v~~~V~~Le~Ki~~iE~ 204 (322)
+++..++--...+|.|+..++.
T Consensus 151 DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 151 DELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999874
No 62
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=79.40 E-value=15 Score=26.66 Aligned_cols=51 Identities=16% Similarity=0.239 Sum_probs=26.8
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHH
Q 020751 149 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 199 (322)
Q Consensus 149 RId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki 199 (322)
.|+.+..++.+.+++...|.++|.+=..-|.+|..+++....-+..=-.+|
T Consensus 5 ~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l 55 (63)
T PF05739_consen 5 ELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKL 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666665555555555555444444433333333
No 63
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=79.31 E-value=21 Score=28.14 Aligned_cols=30 Identities=7% Similarity=0.279 Sum_probs=14.5
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 020751 114 MFATRRSLSDACNSVARQLEDVYSSISAAQ 143 (322)
Q Consensus 114 MfVTKRnMsnAv~svtKqLeqVs~sLaaaK 143 (322)
++.+-+++......+.+.++++.+.+....
T Consensus 17 l~~~l~~l~~~l~~~~~ti~~l~~~~~~i~ 46 (90)
T PF06103_consen 17 LIKVLKKLKKTLDEVNKTIDTLQEQVDPIT 46 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 344555555555555555544444443333
No 64
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=79.24 E-value=8 Score=29.88 Aligned_cols=52 Identities=15% Similarity=0.244 Sum_probs=35.9
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020751 146 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 204 (322)
Q Consensus 146 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~ 204 (322)
+..||+.|..|+--+.+..+...+.|+.-+.. |+.++..+..|..||..++.
T Consensus 2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~-------I~~L~~~l~~L~~rl~~~~~ 53 (69)
T PF04102_consen 2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQ-------IDRLQRQLRLLRERLRELED 53 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHT------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcc
Confidence 56889999999888888888888888766665 66666666677777777763
No 65
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=78.32 E-value=32 Score=32.58 Aligned_cols=114 Identities=20% Similarity=0.235 Sum_probs=68.0
Q ss_pred hhHHHHHHHHH--HhHHHHHHHHHHHHHHHHHhHhh-------hhhhHHHHHHHHHHHHHHHHHhhcchhhhhhH---HH
Q 020751 119 RSLSDACNSVA--RQLEDVYSSISAAQRQLSSKITS-------VDRDVNKIVEISQATQEEVTILRGRSKLIGDE---FQ 186 (322)
Q Consensus 119 RnMsnAv~svt--KqLeqVs~sLaaaKrhLsqRId~-------vD~klDeq~eis~~i~~eV~~v~~dls~ig~D---v~ 186 (322)
|.|-+|...++ +.|++..+.|-.|+..|.-=|+- +=+-+|.+..++..+.++...++....++-.. .+
T Consensus 26 R~LHdsl~~lg~d~~l~~a~~~iPDArdRL~YVi~~TEqAA~rtLnaVE~a~p~~d~l~~~a~~L~~~w~~l~~~~~~~~ 105 (214)
T PRK11166 26 RMLRDSLRELGLDQAIEEAAEAIPDARDRLDYVAQMTEQAAERVLNAVEAAQPHQDQLEKEAKALDARWDEWFANPIELA 105 (214)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 56777777765 77788888888888877644432 22334444445555555555555543332221 34
Q ss_pred HHHHHHHHHHHHHHHhh-----------------hhhhHHhHHHHHHHHHHHhhccCCCccce
Q 020751 187 SVRDIVQTLESKLIEIE-----------------GKQDITTLGVKKLCDRARELENGRPTELV 232 (322)
Q Consensus 187 ~v~~~V~~Le~Ki~~iE-----------------~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~ 232 (322)
.++.++......|..+. .=||.|-+=|....+.++.+|..-..-++
T Consensus 106 e~~~L~~~~~~fL~~v~~~t~~~~~~L~eI~mAqdFQDLTGQvI~kVi~~v~~vE~~L~~ll~ 168 (214)
T PRK11166 106 DARELVTDTRAFLADVPEHTSFTNAQLLEIMMAQDFQDLTGQVIKRMMDVIQEIERQLLMVLL 168 (214)
T ss_pred HHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHccchHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555544444444333 33888998888888888877766554443
No 66
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=78.21 E-value=46 Score=29.11 Aligned_cols=90 Identities=20% Similarity=0.233 Sum_probs=53.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751 123 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 202 (322)
Q Consensus 123 nAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 202 (322)
+++..=-|+|++=...+..-=+.|+.|++.+...+|...+-....++.+.+.... ....++++.-|..||..++..
T Consensus 17 e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~----~~~~E~l~rriq~LEeele~a 92 (143)
T PF12718_consen 17 EELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKR----KSNAEQLNRRIQLLEEELEEA 92 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHhHHHHHhhHHHHHHHHHHH
Confidence 4455556666666666666666677777777777776666555555554433222 223446666677777777666
Q ss_pred hhhhhHHhHHHHHH
Q 020751 203 EGKQDITTLGVKKL 216 (322)
Q Consensus 203 E~kQd~Tn~GV~~L 216 (322)
+.+=.-|+.-+...
T Consensus 93 e~~L~e~~ekl~e~ 106 (143)
T PF12718_consen 93 EKKLKETTEKLREA 106 (143)
T ss_pred HHHHHHHHHHHHHH
Confidence 66655555544433
No 67
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=78.06 E-value=26 Score=31.61 Aligned_cols=89 Identities=10% Similarity=0.201 Sum_probs=51.7
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh----cchhhhhhHHHHHHHH
Q 020751 117 TRRSLSDACNSVARQLEDVYSSI-SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR----GRSKLIGDEFQSVRDI 191 (322)
Q Consensus 117 TKRnMsnAv~svtKqLeqVs~sL-aaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~----~dls~ig~Dv~~v~~~ 191 (322)
|-.++-+-++.....-+.+.+.+ ..+|..|...|..|-+.+.+..+-.+.+.+++...+ .|...+..|+..++.+
T Consensus 78 ~~~~I~~Y~~~f~syY~~L~~~id~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~ 157 (184)
T PF05791_consen 78 LNQDIINYNTTFQSYYDTLVEAIDQKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSI 157 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 55555555554444444444443 356888889998887776666665555555554433 4555666666666666
Q ss_pred HHHHHHHHHHhhhh
Q 020751 192 VQTLESKLIEIEGK 205 (322)
Q Consensus 192 V~~Le~Ki~~iE~k 205 (322)
+.+-.+.|..++..
T Consensus 158 l~~~~g~I~~L~~~ 171 (184)
T PF05791_consen 158 LAGENGDIPQLQKQ 171 (184)
T ss_dssp HHHTT--HHHHHHH
T ss_pred HhcccCCHHHHHHH
Confidence 66666666655543
No 68
>smart00283 MA Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.
Probab=77.98 E-value=47 Score=29.05 Aligned_cols=73 Identities=16% Similarity=0.254 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHH
Q 020751 120 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIV 192 (322)
Q Consensus 120 nMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V 192 (322)
++++-++.++....++-+.++..=.+....++.....+++..+....+.+.+.++..-+..+..-++.+...+
T Consensus 137 ~la~~t~~~~~ev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~i~~~~ 209 (262)
T smart00283 137 KLAERSAESAKEIESLIKEIQEETNEAVAAMEESSSEVEEGVELVEETGEALEEIVDSVEEIADLVQEIAAAT 209 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333344444444444444444444444444444444444444343333333
No 69
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=77.70 E-value=5.6 Score=32.45 Aligned_cols=38 Identities=13% Similarity=0.294 Sum_probs=25.8
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhh
Q 020751 143 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 180 (322)
Q Consensus 143 KrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ 180 (322)
.+.|..||+.+...+++..+....++++...++..+.+
T Consensus 89 ~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 89 IEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777777776666655443
No 70
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=77.57 E-value=1.3 Score=43.98 Aligned_cols=100 Identities=20% Similarity=0.327 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh--------------cchhhhhhHHH
Q 020751 121 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR--------------GRSKLIGDEFQ 186 (322)
Q Consensus 121 MsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~--------------~dls~ig~Dv~ 186 (322)
|+.+|+++..++..++..|.+ |+.+|+++...+++++.-...+..+|..++ .++...+..+.
T Consensus 40 LEssv~sL~~SVs~lss~iSd----Lss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS 115 (326)
T PF04582_consen 40 LESSVASLSDSVSSLSSTISD----LSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSIS 115 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHH
Confidence 344444444444444443332 344444444444444444444444444443 44444444444
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHhHH--HHHHHHHHHhhccC
Q 020751 187 SVRDIVQTLESKLIEIEGKQDITTLG--VKKLCDRARELENG 226 (322)
Q Consensus 187 ~v~~~V~~Le~Ki~~iE~kQd~Tn~G--V~~LC~f~~~~~~~ 226 (322)
.++..|.+++.-|.-+.. +++..| |-.|-+-+..+|.+
T Consensus 116 ~Lqs~v~~lsTdvsNLks--dVSt~aL~ItdLe~RV~~LEs~ 155 (326)
T PF04582_consen 116 DLQSSVSALSTDVSNLKS--DVSTQALNITDLESRVKALESG 155 (326)
T ss_dssp --HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhhhhhhhhhhh--hhhhhcchHhhHHHHHHHHhcC
Confidence 444444444444444432 223332 33444444454444
No 71
>KOG1161 consensus Protein involved in vacuolar polyphosphate accumulation, contains SPX domain [Inorganic ion transport and metabolism]
Probab=77.50 E-value=6.3 Score=39.14 Aligned_cols=71 Identities=15% Similarity=0.217 Sum_probs=56.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHH
Q 020751 120 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 191 (322)
Q Consensus 120 nMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~ 191 (322)
+.++.|..+-++||.|+.=.-+--..|..|++.|..+.|+ -..-.--+++..+++.++..|+.|+..+-.-
T Consensus 45 ~e~dFv~~Ld~ELEKv~~F~lek~~el~~Rl~~L~e~~~~-~~~~~~~~~~~~~lr~~l~~~~~em~~L~~f 115 (310)
T KOG1161|consen 45 DESDFVRLLDAELEKVNGFQLEKESELIIRLKELEEKIDA-LSLEPPSAEEMKELREELVDFHGEMVLLENF 115 (310)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999985 2222233445667777777777777665543
No 72
>PF09602 PhaP_Bmeg: Polyhydroxyalkanoic acid inclusion protein (PhaP_Bmeg); InterPro: IPR011728 This entry describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage [].
Probab=77.28 E-value=31 Score=31.69 Aligned_cols=88 Identities=22% Similarity=0.374 Sum_probs=50.9
Q ss_pred eccCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhHhhhhhhHHHHHHHHHHHHHH-HHHhh-cchhhh
Q 020751 105 WKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSIS-AAQRQLSSKITSVDRDVNKIVEISQATQEE-VTILR-GRSKLI 181 (322)
Q Consensus 105 WKGwsfSDlMfVTKRnMsnAv~svtKqLeqVs~sLa-aaKrhLsqRId~vD~klDeq~eis~~i~~e-V~~v~-~dls~i 181 (322)
||+| +.+| .+|++-+|++++.+.-.- -.+.-++.-++.+...+.+...-...+-.+ |..++ .+...+
T Consensus 14 w~~~---------~~sl-s~~~~~~kqve~~~l~~lkqqqd~itk~veeLe~~~~q~~~~~s~~~~~~vk~L~k~~~~~l 83 (165)
T PF09602_consen 14 WKQW---------SQSL-SLFASFMKQVEQQTLKKLKQQQDWITKQVEELEKELKQFKREFSDLYEEYVKQLRKATGNSL 83 (165)
T ss_pred HHHH---------HHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888 3444 468899999998775543 334556666777766666665555555444 55552 233334
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 020751 182 GDEFQSVRDIVQTLESKLIEI 202 (322)
Q Consensus 182 g~Dv~~v~~~V~~Le~Ki~~i 202 (322)
++-+.....-+..|..||..+
T Consensus 84 ~d~inE~t~k~~El~~~i~el 104 (165)
T PF09602_consen 84 NDSINEWTDKLNELSAKIQEL 104 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455555555443
No 73
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=77.28 E-value=21 Score=30.24 Aligned_cols=63 Identities=14% Similarity=0.231 Sum_probs=40.3
Q ss_pred HHHHHHHhHhhhhhhHH-HHHHHHHHHHHHHHHhhcchh-hhhhHHHHHHHHHHHHHHHHHHhhh
Q 020751 142 AQRQLSSKITSVDRDVN-KIVEISQATQEEVTILRGRSK-LIGDEFQSVRDIVQTLESKLIEIEG 204 (322)
Q Consensus 142 aKrhLsqRId~vD~klD-eq~eis~~i~~eV~~v~~dls-~ig~Dv~~v~~~V~~Le~Ki~~iE~ 204 (322)
.+.++..+++.+-++-+ ...++.+.+.+.|..+-.++. --..||+.++.-|..||.+|..++.
T Consensus 53 ~~e~~~~~~~~~~~~~~~~~~~le~~~~~~v~~~L~~lg~~tk~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 53 AREEVKTALEQTRDQVQRNWDKLEKAFDERVEQALNRLNIPSREEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred HHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444444433332 234666777777776655543 2348999999999999999988764
No 74
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=77.20 E-value=5.9 Score=32.97 Aligned_cols=42 Identities=14% Similarity=0.259 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhh
Q 020751 139 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 180 (322)
Q Consensus 139 LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ 180 (322)
+..|++.+..||+.+...+++..+....++++++.+...+.+
T Consensus 85 ~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~ 126 (129)
T cd00584 85 LEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQE 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345557888888888888888888777777777776665443
No 75
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=76.97 E-value=23 Score=30.51 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=52.3
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhh
Q 020751 116 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 180 (322)
Q Consensus 116 VTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ 180 (322)
.+|..+++-+-.+++..|.+.+.. ..-.+|...++.+..+.+..-++-+.-.++|.+++.|+..
T Consensus 44 ~~r~~l~~Eiv~l~~~~e~~~~~~-~~~~~L~~el~~l~~ry~t~LellGEK~E~veEL~~Dv~D 107 (120)
T PF12325_consen 44 AERDELREEIVKLMEENEELRALK-KEVEELEQELEELQQRYQTLLELLGEKSEEVEELRADVQD 107 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 478888888888888888885544 4445899999999999999999999999999888887443
No 76
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=76.93 E-value=33 Score=32.08 Aligned_cols=81 Identities=12% Similarity=0.261 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 020751 121 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 200 (322)
Q Consensus 121 MsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 200 (322)
+....+.++++|......+..+| .+++.++..++....=.+..+++++.+..+...+..+.+..+.-...|+.+|.
T Consensus 22 l~~~~e~~~~~L~~~~~~~~~~~----~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~ 97 (264)
T PF06008_consen 22 LLSSIEDLTNQLRSYRSKLNPQK----QQLDPLEKELESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQ 97 (264)
T ss_pred HHHHHHHHHHHHHHHhccchhHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445556666666555555443 34555555555555555666666666666666666666666666666666666
Q ss_pred Hhhhh
Q 020751 201 EIEGK 205 (322)
Q Consensus 201 ~iE~k 205 (322)
.+..+
T Consensus 98 ~l~~~ 102 (264)
T PF06008_consen 98 NLQDN 102 (264)
T ss_pred HHHHH
Confidence 55544
No 77
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=76.90 E-value=27 Score=37.25 Aligned_cols=77 Identities=16% Similarity=0.256 Sum_probs=38.5
Q ss_pred Cchhhhhhhh--HHHHHHHHHHh---HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHH
Q 020751 111 PDMMFATRRS--LSDACNSVARQ---LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 185 (322)
Q Consensus 111 SDlMfVTKRn--MsnAv~svtKq---LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv 185 (322)
+||+.||-|. |.+-+..+-|. |.+.-..|......|..+++.+...|....+-....+.+..++......+..+.
T Consensus 129 ~DmLvV~~ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~ 208 (546)
T PF07888_consen 129 SDMLVVTTKAQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEER 208 (546)
T ss_pred cceEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888665 33333333333 333344455555556666666666665555444444444333333333333333
Q ss_pred HH
Q 020751 186 QS 187 (322)
Q Consensus 186 ~~ 187 (322)
+.
T Consensus 209 ~~ 210 (546)
T PF07888_consen 209 ES 210 (546)
T ss_pred HH
Confidence 33
No 78
>PRK14011 prefoldin subunit alpha; Provisional
Probab=76.70 E-value=5.5 Score=35.21 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 020751 138 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 177 (322)
Q Consensus 138 sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~d 177 (322)
.+..|+++|..||+.|++.+++..+..+.+.+++.+++..
T Consensus 85 ~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~ 124 (144)
T PRK14011 85 DVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKE 124 (144)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999888888888766654
No 79
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=76.49 E-value=35 Score=33.17 Aligned_cols=47 Identities=13% Similarity=0.219 Sum_probs=26.4
Q ss_pred chhhhhhhhHHHHHHHHHHhHHHHHHHHHHH---HHHHHHhHhhhhhhHH
Q 020751 112 DMMFATRRSLSDACNSVARQLEDVYSSISAA---QRQLSSKITSVDRDVN 158 (322)
Q Consensus 112 DlMfVTKRnMsnAv~svtKqLeqVs~sLaaa---KrhLsqRId~vD~klD 158 (322)
+-|--....|.+-.+.+.++++.+.+.+... +..|..+|.++....+
T Consensus 152 ~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~ 201 (325)
T PF08317_consen 152 EGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVE 201 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555566666667777766666554443 4445555555554433
No 80
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=76.45 E-value=13 Score=30.12 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh
Q 020751 181 IGDEFQSVRDIVQTLESKLIEI 202 (322)
Q Consensus 181 ig~Dv~~v~~~V~~Le~Ki~~i 202 (322)
+..-++.+-..+..|+.|+..|
T Consensus 40 l~~klDa~~~~l~~l~~~V~~I 61 (75)
T PF05531_consen 40 LNKKLDAQSAQLTTLNTKVNEI 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443
No 81
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=76.41 E-value=36 Score=35.27 Aligned_cols=91 Identities=13% Similarity=0.158 Sum_probs=69.8
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH-------HhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 020751 117 TRRSLSDACNSVARQLEDVYSSISAAQRQLS-------SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 189 (322)
Q Consensus 117 TKRnMsnAv~svtKqLeqVs~sLaaaKrhLs-------qRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 189 (322)
-++-+-++.+..-++|..|...|++.|++|. .+.+.++..+.|.+..-+++..+...-+..++..+-+=..+.
T Consensus 158 ~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL~~~~~~L~ 237 (420)
T COG4942 158 ARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLK 237 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4677778888888899999999999998887 567778888888888888888888777777777777777777
Q ss_pred HHHHHHHHHHHHhhhhhh
Q 020751 190 DIVQTLESKLIEIEGKQD 207 (322)
Q Consensus 190 ~~V~~Le~Ki~~iE~kQd 207 (322)
+.+..+|.-+.+..++-.
T Consensus 238 ~~Ias~e~~aA~~re~~a 255 (420)
T COG4942 238 NEIASAEAAAAKAREAAA 255 (420)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 777777766655444433
No 82
>PRK04863 mukB cell division protein MukB; Provisional
Probab=76.26 E-value=47 Score=39.30 Aligned_cols=81 Identities=16% Similarity=0.165 Sum_probs=39.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHh---------HhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHH
Q 020751 123 DACNSVARQLEDVYSSISAAQRQLSSK---------ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 193 (322)
Q Consensus 123 nAv~svtKqLeqVs~sLaaaKrhLsqR---------Id~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~ 193 (322)
+-.+.+.++++.+......+++++... +......+++..+-.+...+++.+.+..+..+..+++.+..-+.
T Consensus 314 diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLe 393 (1486)
T PRK04863 314 RELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVD 393 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667777777777777777766532 22223333333333333333444444444444444444444444
Q ss_pred HHHHHHHHhh
Q 020751 194 TLESKLIEIE 203 (322)
Q Consensus 194 ~Le~Ki~~iE 203 (322)
.|..++...+
T Consensus 394 eLqeqLaelq 403 (1486)
T PRK04863 394 ELKSQLADYQ 403 (1486)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 83
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=76.08 E-value=57 Score=37.03 Aligned_cols=12 Identities=33% Similarity=0.254 Sum_probs=6.5
Q ss_pred cceEeecc-ceee
Q 020751 3 GFFSCVSG-ILTS 14 (322)
Q Consensus 3 ~lILvGAG-~~GS 14 (322)
|-++-++| ++|-
T Consensus 643 G~~~~~~G~~tGG 655 (1163)
T COG1196 643 GDLVEPSGSITGG 655 (1163)
T ss_pred CcEEeCCeeeecC
Confidence 44566666 3444
No 84
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=76.01 E-value=21 Score=31.24 Aligned_cols=25 Identities=8% Similarity=0.294 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhh
Q 020751 182 GDEFQSVRDIVQTLESKLIEIEGKQ 206 (322)
Q Consensus 182 g~Dv~~v~~~V~~Le~Ki~~iE~kQ 206 (322)
..||+.++.-|..|+.+|..+..++
T Consensus 108 ~~dv~~L~~rId~L~~~v~~l~~~k 132 (132)
T PF05597_consen 108 RKDVEALSARIDQLTAQVERLANKK 132 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5789999988888888888887653
No 85
>PRK09793 methyl-accepting protein IV; Provisional
Probab=75.75 E-value=76 Score=32.40 Aligned_cols=6 Identities=33% Similarity=0.329 Sum_probs=2.2
Q ss_pred CCCCCC
Q 020751 254 RSGSLH 259 (322)
Q Consensus 254 r~~slp 259 (322)
|+.+.|
T Consensus 520 ~~~~~~ 525 (533)
T PRK09793 520 RHESAQ 525 (533)
T ss_pred hhhccc
Confidence 333333
No 86
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=75.54 E-value=83 Score=30.64 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 020751 131 QLEDVYSSISAAQRQLSSKITSVDRDVNKIV 161 (322)
Q Consensus 131 qLeqVs~sLaaaKrhLsqRId~vD~klDeq~ 161 (322)
.|+.-.+.|..-++.|...++.++.-+.+..
T Consensus 153 ~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~ 183 (325)
T PF08317_consen 153 GLEENLELLQEDYAKLDKQLEQLDELLPKLR 183 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444444444444433333
No 87
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=75.42 E-value=14 Score=35.46 Aligned_cols=56 Identities=9% Similarity=0.240 Sum_probs=33.2
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020751 149 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 204 (322)
Q Consensus 149 RId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~ 204 (322)
+|+.+|.+++-.....+.+++++..++..++.+..++..++..+..|+..+..++.
T Consensus 11 ~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ 66 (239)
T COG1579 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLES 66 (239)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666665555555555554443
No 88
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=75.41 E-value=58 Score=37.00 Aligned_cols=23 Identities=30% Similarity=0.533 Sum_probs=8.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhh
Q 020751 181 IGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 181 ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
+..++...+.....|+..|..++
T Consensus 875 l~~~l~~~~~~~~~l~~~l~~~~ 897 (1163)
T COG1196 875 LEDELKELEEEKEELEEELRELE 897 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 89
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=75.27 E-value=7.1 Score=31.69 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=26.1
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchh
Q 020751 139 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 179 (322)
Q Consensus 139 LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls 179 (322)
+..|++.|..||+.+.+++++..+-.+.+++++..+...++
T Consensus 75 ~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~ 115 (120)
T PF02996_consen 75 LEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQ 115 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677777777777777766666666666655554433
No 90
>PRK00846 hypothetical protein; Provisional
Probab=75.13 E-value=20 Score=29.04 Aligned_cols=55 Identities=9% Similarity=0.120 Sum_probs=40.7
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020751 143 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 204 (322)
Q Consensus 143 KrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~ 204 (322)
...+.+||+.|..++--|...++...+.|+.-+.. ++.++..+.-|-.|+..++.
T Consensus 8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~-------I~~L~~ql~~L~~rL~~~~~ 62 (77)
T PRK00846 8 DQALEARLVELETRLSFQEQALTELSEALADARLT-------GARNAELIRHLLEDLGKVRS 62 (77)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhcc
Confidence 45688999999999999998888888888776655 55555555555566666653
No 91
>PRK09793 methyl-accepting protein IV; Provisional
Probab=75.11 E-value=81 Score=32.20 Aligned_cols=34 Identities=6% Similarity=0.051 Sum_probs=13.3
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcch
Q 020751 145 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRS 178 (322)
Q Consensus 145 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dl 178 (322)
++..-++.+....+++.+-.+++.+.+.++...+
T Consensus 279 eia~~~~~ls~~~e~qa~~~~~~~~s~~~~~~~~ 312 (533)
T PRK09793 279 EIVAGNNDLSSRTEQQAASLAQTAASMEQLTATV 312 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444444444433333333333333333
No 92
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=74.62 E-value=17 Score=36.44 Aligned_cols=89 Identities=13% Similarity=0.253 Sum_probs=74.5
Q ss_pred chhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHH
Q 020751 112 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 191 (322)
Q Consensus 112 DlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~ 191 (322)
|=|=-=+.+++++...+..||+.+++.|..+-..+..|=..+...++...+-=+..+++..++++...+...-|....+.
T Consensus 223 eqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~ 302 (359)
T PF10498_consen 223 EQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEGVSERTRE 302 (359)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44666688999999999999999999999999999999999999999999999999999999998888877777766644
Q ss_pred HHHHHHHHH
Q 020751 192 VQTLESKLI 200 (322)
Q Consensus 192 V~~Le~Ki~ 200 (322)
...+-.+++
T Consensus 303 L~~IseeLe 311 (359)
T PF10498_consen 303 LAEISEELE 311 (359)
T ss_pred HHHHHHHHH
Confidence 444444443
No 93
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=74.13 E-value=31 Score=34.78 Aligned_cols=100 Identities=17% Similarity=0.338 Sum_probs=70.6
Q ss_pred ccCCc-CchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhH
Q 020751 106 KGWKL-PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 184 (322)
Q Consensus 106 KGwsf-SDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~D 184 (322)
|-|.+ -|=|---|+|...++..++-+|+.++..+..+=..+..|=-.+...|.-.+.--+...++..++|..-.+...+
T Consensus 223 kDWR~H~~QM~s~~~nIe~~~~~~~~~Ldklh~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~g 302 (384)
T KOG0972|consen 223 KDWRLHLEQMNSMHKNIEQKVGNVGPYLDKLHKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVG 302 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 45544 36788899999999999999999999999888888888877777777666665566666666666666655555
Q ss_pred HHH----HHHHHHHHHHHHHHhhhh
Q 020751 185 FQS----VRDIVQTLESKLIEIEGK 205 (322)
Q Consensus 185 v~~----v~~~V~~Le~Ki~~iE~k 205 (322)
|.+ +..++..+|-+=.+||.+
T Consensus 303 v~~rT~~L~eVm~e~E~~KqemEe~ 327 (384)
T KOG0972|consen 303 VSSRTETLDEVMDEIEQLKQEMEEQ 327 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 543 444455555555555543
No 94
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=73.91 E-value=14 Score=28.48 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=22.4
Q ss_pred hhhheeeEEeccCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHH
Q 020751 96 VAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISA 141 (322)
Q Consensus 96 GavGYgYmwWKGwsfSDlMfVTKRnMsnAv~svtKqLeqVs~sLaa 141 (322)
+++||.|-==+|- -||+.+.+.+..+..++++.++.+..
T Consensus 13 a~~glL~aP~sG~-------e~R~~l~~~~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 13 AAAGLLFAPKSGK-------ETREKLKDKAEDLKDKAKDLYEEAKE 51 (74)
T ss_pred HHHHHHhCCCCcH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455544444444 36777777777777666665555444
No 95
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=73.31 E-value=15 Score=32.68 Aligned_cols=55 Identities=9% Similarity=0.172 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH-HhhcchhhhhhHHHH
Q 020751 133 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT-ILRGRSKLIGDEFQS 187 (322)
Q Consensus 133 eqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~-~v~~dls~ig~Dv~~ 187 (322)
+.|.+++..+-+.|..-|+....++.+-.++++.=-+.|. -+++|++.+...++.
T Consensus 3 ~~l~e~~~~~~~~L~~~le~a~e~~~~~~elT~eEl~lv~~ylkRDl~~~a~~~~~ 58 (146)
T PF07295_consen 3 ESLEEALEHSEEELQEALEKAKEYLVAAGELTREELALVSAYLKRDLEEFARYYEE 58 (146)
T ss_pred hHHHHHHhcCHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544444433333332 356677776666655
No 96
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=72.99 E-value=30 Score=35.72 Aligned_cols=86 Identities=14% Similarity=0.246 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH------------hhcchhhhhhHHHHHHHHHH--------HH
Q 020751 136 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI------------LRGRSKLIGDEFQSVRDIVQ--------TL 195 (322)
Q Consensus 136 s~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~------------v~~dls~ig~Dv~~v~~~V~--------~L 195 (322)
..-+..-|++|..+-++|-.++|+.+.+.+.+++||.. +..|++....|++.++.-+. .|
T Consensus 201 R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiW 280 (424)
T PF03915_consen 201 RAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIW 280 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 34566778888888888888888888888888887643 33444444444444444432 45
Q ss_pred HHHHHHhhhhhhHHhHHHHHHHHHHH
Q 020751 196 ESKLIEIEGKQDITTLGVKKLCDRAR 221 (322)
Q Consensus 196 e~Ki~~iE~kQd~Tn~GV~~LC~f~~ 221 (322)
|.-|+.|..-|+|=+.=-..+-+.-+
T Consensus 281 E~EL~~V~eEQqfL~~QedL~~DL~e 306 (424)
T PF03915_consen 281 ESELQKVCEEQQFLKLQEDLLSDLKE 306 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777778877776555444433
No 97
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=72.95 E-value=35 Score=26.75 Aligned_cols=66 Identities=14% Similarity=0.114 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020751 138 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 138 sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
.|.+.+.-|..|++.++.|+.......+.+..|=..+-.-+..-..++..++.-+..|...+++..
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELR 67 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467788889999999999999999999888888766666677777778888877777777766543
No 98
>PF10073 DUF2312: Uncharacterized protein conserved in bacteria (DUF2312); InterPro: IPR018753 This entry is represented by Azospirillum phage Cd, Gp10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family of hypothetical bacterial proteins have no known function.
Probab=72.59 E-value=13 Score=29.93 Aligned_cols=44 Identities=20% Similarity=0.361 Sum_probs=28.8
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHH
Q 020751 144 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 194 (322)
Q Consensus 144 rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~ 194 (322)
|.+-.||++|. +|-++|+..|++=-.++++ -|+|+..++++|.-
T Consensus 7 r~~ieRiErLE---eEk~~i~~dikdVyaEAK~----~GfD~K~lr~ii~l 50 (74)
T PF10073_consen 7 RQFIERIERLE---EEKKAISDDIKDVYAEAKG----NGFDTKALRQIIRL 50 (74)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHH
Confidence 34445555554 4555666666665555555 69999999999864
No 99
>COG3750 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.49 E-value=22 Score=29.38 Aligned_cols=44 Identities=18% Similarity=0.318 Sum_probs=27.4
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHH
Q 020751 144 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 194 (322)
Q Consensus 144 rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~ 194 (322)
|.+..||++|. +|-+.|...|++-- .+.+--|+|++.++.++.-
T Consensus 17 rafIerIERlE---eEk~~i~~dikdvy----~eakg~GFDvKa~r~iirl 60 (85)
T COG3750 17 RAFIERIERLE---EEKKTIADDIKDVY----AEAKGHGFDVKAVRTIIRL 60 (85)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHH----HHHHcCCccHHHHHHHHHH
Confidence 34445555554 45555555555544 4455579999999988753
No 100
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=72.27 E-value=25 Score=26.81 Aligned_cols=50 Identities=20% Similarity=0.312 Sum_probs=36.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 020751 122 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 174 (322)
Q Consensus 122 snAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v 174 (322)
...++++.+.|+++...-...|+ ..|..+...||+..++.+++.-||..+
T Consensus 2 ~~l~~~i~~~l~~~~~~~~~~r~---~~i~~~e~~l~ea~~~l~qMe~E~~~~ 51 (79)
T PF05008_consen 2 QALTAEIKSKLERIKNLSGEQRK---SLIREIERDLDEAEELLKQMELEVRSL 51 (79)
T ss_dssp HHHHHHHHHHHHHGGGS-CHHHH---HHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHhhccChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45667777777777754444444 456667789999999999999998776
No 101
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=71.63 E-value=19 Score=29.13 Aligned_cols=62 Identities=16% Similarity=0.297 Sum_probs=29.2
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020751 140 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 205 (322)
Q Consensus 140 aaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~k 205 (322)
...+|.+..+++.+-.+ .++++++|..--.. ..+.+.+..++..+..-+..||.++..++..
T Consensus 35 d~~~r~l~~~~e~lr~~---rN~~sk~I~~~~~~-~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~ 96 (108)
T PF02403_consen 35 DQERRELQQELEELRAE---RNELSKEIGKLKKA-GEDAEELKAEVKELKEEIKELEEQLKELEEE 96 (108)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHCHT-TCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HhHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444 34444444432211 1344445555555555555555555554443
No 102
>TIGR00833 actII Transport protein. Characterized members of the RND superfamily all probably catalyze substrate efflux via an H+ antiport mechanism. These proteins are found ubiquitously in bacteria, archaea and eukaryotes. This sub-family includes the S. coelicolor ActII3 protein, which may play a role in drug resistance, and the M. tuberculosis MmpL7 protein, which catalyzes export of an outer membrane lipid, phthiocerol dimycocerosate.
Probab=71.54 E-value=44 Score=36.93 Aligned_cols=49 Identities=6% Similarity=0.038 Sum_probs=31.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhhccC
Q 020751 178 SKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENG 226 (322)
Q Consensus 178 ls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~f~~~~~~~ 226 (322)
+.+-..++..+.+.+..+..++.++....+-...+...|-+|...+.+.
T Consensus 602 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 650 (910)
T TIGR00833 602 VASALSQVSGLPNALDGIGTQLAQMRESAAGVQDLLNELSDYSMTMGKL 650 (910)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455566666777777777777766555556666666666665543
No 103
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=71.39 E-value=73 Score=28.13 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=16.8
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020751 178 SKLIGDEFQSVRDIVQTLESKLIEIEGKQD 207 (322)
Q Consensus 178 ls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd 207 (322)
...+...++..++.+...-.||...+.+..
T Consensus 140 ~~~~~~~~~~~~~~l~~~lekL~~fd~~~~ 169 (204)
T PF04740_consen 140 SSSFIDSLEKAKKKLQETLEKLRAFDQQSS 169 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 455555555555555555556666655443
No 104
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=71.39 E-value=50 Score=29.73 Aligned_cols=87 Identities=11% Similarity=0.171 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHH--HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 020751 132 LEDVYSSISAAQRQ--LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 209 (322)
Q Consensus 132 LeqVs~sLaaaKrh--LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~T 209 (322)
=+++++.|....+| +.+||+.|....+...+-++.|..++.+++.+|..+- ..-+.|+..+...+...
T Consensus 11 d~~L~~~L~~l~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~~~~----------~~~~~~~~~~~~~~~~~ 80 (188)
T PF10018_consen 11 DDELSSALEELQEHQENQARIQQLRAEIEELDEQIRDILKQLKEARKELRTLP----------DQADEKLKSIPKAEKRP 80 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHhhhccccccccccCC
Confidence 34444444444444 4566666666666666666666666666555544333 22223334444333322
Q ss_pred hHHHHHHHHHHHhhccCCCc
Q 020751 210 TLGVKKLCDRARELENGRPT 229 (322)
Q Consensus 210 n~GV~~LC~f~~~~~~~~~~ 229 (322)
- -+..|..|++++.....+
T Consensus 81 v-~~~eLL~YA~rISk~t~~ 99 (188)
T PF10018_consen 81 V-DYEELLSYAHRISKFTSA 99 (188)
T ss_pred C-CHHHHHHHHHHHHHhcCC
Confidence 2 277888999886544333
No 105
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=71.10 E-value=63 Score=32.03 Aligned_cols=57 Identities=14% Similarity=0.259 Sum_probs=24.1
Q ss_pred hhHHHHHH---HHHHhHHHHHHHHHHH-HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 020751 119 RSLSDACN---SVARQLEDVYSSISAA-QRQLSSKITSVDRDVNKIVEISQATQEEVTILR 175 (322)
Q Consensus 119 RnMsnAv~---svtKqLeqVs~sLaaa-KrhLsqRId~vD~klDeq~eis~~i~~eV~~v~ 175 (322)
.++..|-. ..+..||+|.+.+... --.|...|..+...|++|+...+..+++|..++
T Consensus 41 Q~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~ 101 (301)
T PF06120_consen 41 QNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLK 101 (301)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44544433 2344555555444332 223344444444444444444444444444333
No 106
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=71.10 E-value=49 Score=37.75 Aligned_cols=94 Identities=20% Similarity=0.345 Sum_probs=67.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020751 125 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 204 (322)
Q Consensus 125 v~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~ 204 (322)
....-++|.++...+..+...+.+++..+..++++..+-.+...++..+.+. .+..+...++.-+..++.+|+.++.
T Consensus 258 l~~~~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~---~~~~~~~~~~~~l~~~~~~L~~i~~ 334 (1201)
T PF12128_consen 258 LQALEQQLCHLHAELNADEQQLEQEQPELKEELNELNEELEKLEDEIKELRD---ELNKELSALNADLARIKSELDEIEQ 334 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777888888888888888888888887777777776666554 3455666667777777788888876
Q ss_pred h-hhHHhHHHHHHHHHHH
Q 020751 205 K-QDITTLGVKKLCDRAR 221 (322)
Q Consensus 205 k-Qd~Tn~GV~~LC~f~~ 221 (322)
+ ..|-..+|..+++-+.
T Consensus 335 ~~~~ye~~~i~~~~~~~~ 352 (1201)
T PF12128_consen 335 QKKDYEDADIEQLIARVD 352 (1201)
T ss_pred HHHHHHHCCHHHHHHHHH
Confidence 5 5666777777766444
No 107
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=71.01 E-value=10 Score=32.18 Aligned_cols=38 Identities=16% Similarity=0.223 Sum_probs=21.2
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 020751 140 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 177 (322)
Q Consensus 140 aaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~d 177 (322)
..|++.|..||+.++..+++..+....+++++..++..
T Consensus 93 ~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~ 130 (140)
T PRK03947 93 DEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQE 130 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666555555555555444433
No 108
>PRK15041 methyl-accepting chemotaxis protein I; Provisional
Probab=70.65 E-value=1.1e+02 Score=31.55 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=4.9
Q ss_pred HHHHHHHHHHhH
Q 020751 121 LSDACNSVARQL 132 (322)
Q Consensus 121 MsnAv~svtKqL 132 (322)
|.++++.+-..|
T Consensus 252 La~s~n~m~~~L 263 (554)
T PRK15041 252 LAESLRHMQGEL 263 (554)
T ss_pred HHHHHHHHHHHH
Confidence 444444443333
No 109
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=70.46 E-value=42 Score=36.67 Aligned_cols=32 Identities=6% Similarity=0.127 Sum_probs=14.8
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 020751 143 QRQLSSKITSVDRDVNKIVEISQATQEEVTIL 174 (322)
Q Consensus 143 KrhLsqRId~vD~klDeq~eis~~i~~eV~~v 174 (322)
|+.|+.+=+++.+|+++..+-++.+.+-+..+
T Consensus 588 ~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~v 619 (717)
T PF10168_consen 588 RKSLRESAEKLAERYEEAKDKQEKLMKRVDRV 619 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455544444444444444433
No 110
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=70.44 E-value=50 Score=34.23 Aligned_cols=84 Identities=15% Similarity=0.230 Sum_probs=62.3
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHH---HHHHhh
Q 020751 147 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLC---DRAREL 223 (322)
Q Consensus 147 sqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC---~f~~~~ 223 (322)
..++..+-.++.+|.++-+.+++-+..-+.||+.+..||.++|+--..|..|+..-......=+.=|..+. +++..+
T Consensus 13 ~~~~~~Lh~~i~~cd~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i~~i~ipP~lI~~I 92 (508)
T PF04129_consen 13 SENFADLHNQIQECDSILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFIDDIVIPPDLIRSI 92 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCHHHHHhH
Confidence 36788899999999999999999999999999999999999999988888888755544443333333332 233344
Q ss_pred ccCCCcc
Q 020751 224 ENGRPTE 230 (322)
Q Consensus 224 ~~~~~~~ 230 (322)
-++...+
T Consensus 93 ~~~~v~e 99 (508)
T PF04129_consen 93 CEGPVNE 99 (508)
T ss_pred hcCCCCH
Confidence 4444443
No 111
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=69.83 E-value=80 Score=28.27 Aligned_cols=80 Identities=13% Similarity=0.335 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH--------HHHHHHHHHHHHhhcchhhhhhHHHHHHHHH
Q 020751 121 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV--------EISQATQEEVTILRGRSKLIGDEFQSVRDIV 192 (322)
Q Consensus 121 MsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~--------eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V 192 (322)
+++..+.+-.|.-++...|+..+.-+..|+..++.++.... +......+.+..++ +.++.|+..++..+
T Consensus 18 LtnvLnaIr~qn~~i~aql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq---~~~rneLtnlnsil 94 (140)
T PF04513_consen 18 LTNVLNAIRLQNVQIAAQLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQLQ---DTLRNELTNLNSIL 94 (140)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 45556666556666666666666655555555555554411 23333444444443 34445666666666
Q ss_pred HHHHHHHHHhh
Q 020751 193 QTLESKLIEIE 203 (322)
Q Consensus 193 ~~Le~Ki~~iE 203 (322)
..|-..+--|.
T Consensus 95 ~nL~ssvTNin 105 (140)
T PF04513_consen 95 NNLTSSVTNIN 105 (140)
T ss_pred HHHHHHHhhHH
Confidence 66665555544
No 112
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=69.44 E-value=3.1 Score=39.89 Aligned_cols=74 Identities=20% Similarity=0.220 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcC-CCceEEEeCCCCCCCCchHHHHHHHhhhheeeEE-eccCC--cCchhhhhhhhHHHHHHHHHH
Q 020751 57 LAEVSSVQQELSHV-PRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVW-WKGWK--LPDMMFATRRSLSDACNSVAR 130 (322)
Q Consensus 57 ~aQV~~LaqElr~L-sR~ITVvn~~ssg~gg~~y~l~a~iGavGYgYmw-WKGws--fSDlMfVTKRnMsnAv~svtK 130 (322)
.+--++|+++|++. ...|.|+-++|-|+.++.=..-+++|+.|.-++| |.|-+ |..-+.+|.++.+|-.++.+.
T Consensus 125 d~sA~~ir~~l~~~~g~~v~VIItDt~gr~~R~G~~gvAIG~aG~~~l~d~~G~~D~~G~~L~~T~~avaDelAaaA~ 202 (243)
T TIGR01916 125 DASAEKIRRGLRELTGVDVGVIITDTNGRPFREGQVGVAIGAAGLKVLRDWRGEKDLYGRELEVTEVAVADELAAAAN 202 (243)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCCCCccccCCCCeeeeccCChHHHhcCCCcCCCCCeeeccHHHHHHHHHHHHH
Confidence 34568899999998 7788888777656654432234689999999998 77764 344578999998887766543
No 113
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=68.87 E-value=92 Score=29.07 Aligned_cols=8 Identities=25% Similarity=0.567 Sum_probs=3.6
Q ss_pred HHHHHHHH
Q 020751 56 LLAEVSSV 63 (322)
Q Consensus 56 L~aQV~~L 63 (322)
|++++..+
T Consensus 135 ll~~~~~l 142 (291)
T TIGR00996 135 LLGSLTRL 142 (291)
T ss_pred HHHHHHHH
Confidence 44444443
No 114
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=68.72 E-value=40 Score=40.88 Aligned_cols=81 Identities=10% Similarity=0.167 Sum_probs=67.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751 123 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 202 (322)
Q Consensus 123 nAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 202 (322)
.++.-+-..+.+..+.+..+||.+..|++.....++....-.....+--..++.+++....|++.++.++..||.|+...
T Consensus 1361 ~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f 1440 (1930)
T KOG0161|consen 1361 QWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRF 1440 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455556888899999999999999999998888888888888889999999999999999999999998866
Q ss_pred h
Q 020751 203 E 203 (322)
Q Consensus 203 E 203 (322)
+
T Consensus 1441 ~ 1441 (1930)
T KOG0161|consen 1441 E 1441 (1930)
T ss_pred H
Confidence 5
No 115
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=68.47 E-value=47 Score=33.47 Aligned_cols=38 Identities=13% Similarity=0.240 Sum_probs=19.4
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 020751 130 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT 167 (322)
Q Consensus 130 KqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i 167 (322)
+.++.-.+.+.+.+..+.++|+.++.++.......+.+
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 198 (457)
T TIGR01000 161 DKSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAI 198 (457)
T ss_pred hhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444555555555555555555555544444433
No 116
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=68.46 E-value=65 Score=33.82 Aligned_cols=121 Identities=15% Similarity=0.291 Sum_probs=76.0
Q ss_pred hheeeEEeccCCcCchhhhhh-hhH-------------------HHHHHHHHHhHHHHHHHHH---HHHHHHHHhHhhhh
Q 020751 98 VGYGYVWWKGWKLPDMMFATR-RSL-------------------SDACNSVARQLEDVYSSIS---AAQRQLSSKITSVD 154 (322)
Q Consensus 98 vGYgYmwWKGwsfSDlMfVTK-RnM-------------------snAv~svtKqLeqVs~sLa---aaKrhLsqRId~vD 154 (322)
-||-.|-=+|..|+++=+-.+ ..+ ......+...+|++|+.+. .||+...+.++.+.
T Consensus 233 ~gy~~m~~~gy~l~~~~i~~~i~~i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~ 312 (560)
T PF06160_consen 233 EGYREMEEEGYYLEHLDIEEEIEQIEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELY 312 (560)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 489999999999998543322 111 2234455666677777765 47788888888888
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHH-------------------------------HHHHHHHHHHHHHHhh
Q 020751 155 RDVNKIVEISQATQEEVTILRGRSKLIGDEFQS-------------------------------VRDIVQTLESKLIEIE 203 (322)
Q Consensus 155 ~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~-------------------------------v~~~V~~Le~Ki~~iE 203 (322)
+.++...+-.+.+..|+..++..-.--..|++. +...+..+...|..|+
T Consensus 313 ~~l~~~~~~~~~l~~e~~~v~~sY~L~~~e~~~~~~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~~ie 392 (560)
T PF06160_consen 313 EYLEHAKEQNKELKEELERVSQSYTLNHNELEIVRELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLEEIE 392 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHH
Confidence 888888777777777766655432211122221 2223445555666777
Q ss_pred hhhhHHhHHHHHHHH
Q 020751 204 GKQDITTLGVKKLCD 218 (322)
Q Consensus 204 ~kQd~Tn~GV~~LC~ 218 (322)
..|.--+..+..|+.
T Consensus 393 ~~q~~~~~~l~~L~~ 407 (560)
T PF06160_consen 393 EEQEEINESLQSLRK 407 (560)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777777774
No 117
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=67.89 E-value=24 Score=36.92 Aligned_cols=61 Identities=11% Similarity=0.279 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHH
Q 020751 133 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 193 (322)
Q Consensus 133 eqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~ 193 (322)
..+|+.|..-=+++..+++.++.++.+..+....++++-..+|..+.++..++..+++.|.
T Consensus 371 ~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~dE~~Ar~~l~~~~~~l~~ikR~le 431 (560)
T PF06160_consen 371 QVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKDEKEAREKLQKLKQKLREIKRRLE 431 (560)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777888888888888888888888888888888888888888888887776654
No 118
>PRK10698 phage shock protein PspA; Provisional
Probab=67.82 E-value=53 Score=30.64 Aligned_cols=80 Identities=10% Similarity=0.187 Sum_probs=49.6
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH---------HHHHHHhhcchhhhhhHHHHHHHHHHHH
Q 020751 125 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT---------QEEVTILRGRSKLIGDEFQSVRDIVQTL 195 (322)
Q Consensus 125 v~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i---------~~eV~~v~~dls~ig~Dv~~v~~~V~~L 195 (322)
|+.-...|+.-++....+-..|...+..|..|+.+.+.=...+ +.+|.++-. +.|..+--..+..+
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~-----~~~~~~a~~~f~rm 171 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLD-----SGKLDEAMARFESF 171 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCcchHHHHHHHH
Confidence 5555556666666666666667777777777777665433222 222333222 24455566677889
Q ss_pred HHHHHHhhhhhhHH
Q 020751 196 ESKLIEIEGKQDIT 209 (322)
Q Consensus 196 e~Ki~~iE~kQd~T 209 (322)
|.||+++|..-+..
T Consensus 172 E~ki~~~Ea~aea~ 185 (222)
T PRK10698 172 ERRIDQMEAEAESH 185 (222)
T ss_pred HHHHHHHHHHHhHh
Confidence 99999999887664
No 119
>PRK02224 chromosome segregation protein; Provisional
Probab=67.73 E-value=51 Score=35.57 Aligned_cols=29 Identities=10% Similarity=0.217 Sum_probs=15.1
Q ss_pred hHHHHHHHHHH-------HHHHHHHhHhhhhhhHHH
Q 020751 131 QLEDVYSSISA-------AQRQLSSKITSVDRDVNK 159 (322)
Q Consensus 131 qLeqVs~sLaa-------aKrhLsqRId~vD~klDe 159 (322)
.++++++.+.. .++.+..+++.+...|++
T Consensus 163 ~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 198 (880)
T PRK02224 163 KLEEYRERASDARLGVERVLSDQRGSLDQLKAQIEE 198 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554444444 455555555555555544
No 120
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=67.59 E-value=33 Score=41.26 Aligned_cols=23 Identities=9% Similarity=0.320 Sum_probs=12.4
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhh
Q 020751 130 RQLEDVYSSISAAQRQLSSKITS 152 (322)
Q Consensus 130 KqLeqVs~sLaaaKrhLsqRId~ 152 (322)
.+++++...|+.+|+||....++
T Consensus 805 ~~i~eL~~el~~lk~klq~~~~~ 827 (1822)
T KOG4674|consen 805 SRIKELERELQKLKKKLQEKSSD 827 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554443
No 121
>PRK02119 hypothetical protein; Provisional
Probab=67.55 E-value=23 Score=27.93 Aligned_cols=51 Identities=8% Similarity=0.138 Sum_probs=34.1
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751 145 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 202 (322)
Q Consensus 145 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 202 (322)
.+..||+.|..|+--|........+.|++-+..+ +.++.-+..|-.++..+
T Consensus 6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~i-------d~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVI-------DKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhh
Confidence 4778899888888888888888888887766654 44444444444444443
No 122
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=67.48 E-value=22 Score=30.47 Aligned_cols=51 Identities=10% Similarity=0.134 Sum_probs=31.3
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 020751 113 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 171 (322)
Q Consensus 113 lMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV 171 (322)
+|..|+++..+. .++...|..+|.+|.+-=+.|.+..++..++-..+.++-
T Consensus 16 ~~r~~~~~~~~q--------~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y 66 (128)
T PF06295_consen 16 IGRLTSSNQQKQ--------AKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDY 66 (128)
T ss_pred HHHHhccchhhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555665332 344455556666666666677777777777766666554
No 123
>PF15358 TSKS: Testis-specific serine kinase substrate
Probab=67.41 E-value=51 Score=34.64 Aligned_cols=122 Identities=19% Similarity=0.257 Sum_probs=79.2
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHh--
Q 020751 145 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARE-- 222 (322)
Q Consensus 145 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~f~~~-- 222 (322)
.++|-|++|..+-+-..|--+.-+.|-.++.+--++...-...|-+.|+.-|-|-..+.-+-..--+-+.||-+.++.
T Consensus 136 ~vnQHVq~LQseCsvlsEnLErrrQEaeELEgyCsqLk~nCrkVt~SVedaEiKtnvLkqnS~~LEekLr~lq~qLqdE~ 215 (558)
T PF15358_consen 136 RVNQHVQTLQSECSVLSENLERRRQEAEELEGYCSQLKENCRKVTRSVEDAEIKTNVLKQNSALLEEKLRYLQQQLQDET 215 (558)
T ss_pred HHHHHHHHHHHHhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccccchHHHHHHHHHHHHHhcccC
Confidence 456777777777777777777777888888888888888888999999999988888887777788889999877653
Q ss_pred --hccCCCccceeccccCcccccccCCCCCCCCCCCCCCCCCCCCCCC
Q 020751 223 --LENGRPTELVQASRYTLSRTTLELPGITPSSRSGSLHPLPLEPPSP 268 (322)
Q Consensus 223 --~~~~~~~~~~Q~~~s~s~~~ale~~~~~p~sr~~slpp~~~e~~sp 268 (322)
.....++++-|-.-++-++.. +++.++++.+...|+.|.+|+-|
T Consensus 216 prrqe~e~qELeqkleagls~~~--l~p~~~~~g~~~p~~s~~~p~~~ 261 (558)
T PF15358_consen 216 PRRQEAEWQELEQKLEAGLSRSG--LPPTADSTGCPGPPGSPEEPPRP 261 (558)
T ss_pred cchhhhhHHHHHHHHhhhhhhcC--CCccccCCCCCCCCCCCCCCCCc
Confidence 122223444443333322222 23344444444333335555444
No 124
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=67.38 E-value=1.2e+02 Score=28.92 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHH
Q 020751 155 RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 221 (322)
Q Consensus 155 ~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~f~~ 221 (322)
.-|.|...-......|=...-+.|-+|..|+..+..++...+.--...+.+=...-..+.-|=+++.
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in 98 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEIN 98 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555445555566666666666666666555554444443333334444444443
No 125
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=67.07 E-value=82 Score=33.35 Aligned_cols=34 Identities=12% Similarity=0.204 Sum_probs=14.6
Q ss_pred HHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751 169 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 202 (322)
Q Consensus 169 ~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 202 (322)
+++.+++.++..+..+++.++.-+..++.++.++
T Consensus 435 ~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 435 NELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444433
No 126
>PRK02224 chromosome segregation protein; Provisional
Probab=67.00 E-value=1.4e+02 Score=32.35 Aligned_cols=12 Identities=8% Similarity=0.174 Sum_probs=4.5
Q ss_pred HHHHhHHHHHHH
Q 020751 127 SVARQLEDVYSS 138 (322)
Q Consensus 127 svtKqLeqVs~s 138 (322)
.+-.+++.+-..
T Consensus 184 ~~~~~~~~~~~~ 195 (880)
T PRK02224 184 DQRGSLDQLKAQ 195 (880)
T ss_pred HHHHHHHHHHHH
Confidence 333334333333
No 127
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=66.96 E-value=74 Score=34.82 Aligned_cols=77 Identities=16% Similarity=0.282 Sum_probs=51.5
Q ss_pred HHHHHHHHHHh-HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHH
Q 020751 121 LSDACNSVARQ-LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 199 (322)
Q Consensus 121 MsnAv~svtKq-LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki 199 (322)
+..|+..+-.+ + .-...|+.++..|+..+-...++|.+-...++++...++..-+.+.+-++.+.+.=+.|..|+
T Consensus 541 L~~a~~vlreeYi----~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~ 616 (717)
T PF10168_consen 541 LSQATKVLREEYI----EKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRV 616 (717)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566655543 2 234678999999999999999888888888877776666555555555555555555555555
Q ss_pred HH
Q 020751 200 IE 201 (322)
Q Consensus 200 ~~ 201 (322)
+.
T Consensus 617 ~~ 618 (717)
T PF10168_consen 617 DR 618 (717)
T ss_pred HH
Confidence 53
No 128
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=66.65 E-value=92 Score=30.37 Aligned_cols=47 Identities=21% Similarity=0.340 Sum_probs=33.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 020751 129 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR 175 (322)
Q Consensus 129 tKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~ 175 (322)
.++|++.-+.|.+++.....++..|...+++..+-.+.+++||.-++
T Consensus 62 ~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~ 108 (258)
T PF15397_consen 62 HKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLS 108 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777777777777777777777777777775554
No 129
>PF01442 Apolipoprotein: Apolipoprotein A1/A4/E domain; InterPro: IPR000074 Exchangeable apolipoproteins (apoA, apoC and apoE) have the same genomic structure and are members of a multi-gene family that probably evolved from a common ancestral gene. This entry includes the ApoA1, ApoA4 and ApoE proteins. ApoA1 and ApoA4 are part of the APOA1/C3/A4/A5 gene cluster on chromosome 11 []. Apolipoproteins function in lipid transport as structural components of lipoprotein particles, cofactors for enzymes and ligands for cell-surface receptors. In particular, apoA1 is the major protein component of high-density lipoproteins; apoA4 is thought to act primarily in intestinal lipid absorption; and apoE is a blood plasma protein that mediates the transport and uptake of cholesterol and lipid by way of its high affinity interaction with different cellular receptors, including the low-density lipoprotein (LDL) receptor. Recent findings with apoA1 and apoE suggest that the tertiary structures of these two members of the human exchangeable apolipoprotein gene family are related []. The three-dimensional structure of the LDL receptor-binding domain of apoE indicates that the protein forms an unusually elongated four-helix bundle that may be stabilised by a tightly packed hydrophobic core that includes leucine zipper-type interactions and by numerous salt bridges on the mostly charged surface. Basic amino acids important for LDL receptor binding are clustered into a surface patch on one long helix [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0042157 lipoprotein metabolic process, 0005576 extracellular region; PDB: 1YA9_A 3S84_A 1NFN_A 1LE2_A 1B68_A 1BZ4_A 1OEG_A 2L7B_A 1LE4_A 1EA8_A ....
Probab=66.65 E-value=76 Score=26.50 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 020751 56 LLAEVSSVQQEL 67 (322)
Q Consensus 56 L~aQV~~LaqEl 67 (322)
|......+...|
T Consensus 32 l~~~~~~~~~~l 43 (202)
T PF01442_consen 32 LAEEIEALSERL 43 (202)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 130
>PRK02793 phi X174 lysis protein; Provisional
Probab=66.43 E-value=22 Score=27.93 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=36.7
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020751 145 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 145 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
.+.+||..|..++--|........+.|++-+..+ +.++.-+..|-.|+..++
T Consensus 5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I-------~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEM-------AKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhhc
Confidence 4778999999999888888888888887776654 444444444445555544
No 131
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=66.11 E-value=59 Score=37.38 Aligned_cols=89 Identities=11% Similarity=0.265 Sum_probs=49.0
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH-HHhhcchhhhhhHHHHHHHHHHH
Q 020751 116 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV-TILRGRSKLIGDEFQSVRDIVQT 194 (322)
Q Consensus 116 VTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV-~~v~~dls~ig~Dv~~v~~~V~~ 194 (322)
++++-+.+|.++|-.-.-.+ ..+..-.+|.-.+|+..-+..|.+......++++. ..+..+++++..+++.+..-|..
T Consensus 334 ~~d~Ei~~~r~~~~~~~re~-~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek 412 (1074)
T KOG0250|consen 334 AQDEEIEEARKDLDDLRREV-NDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEK 412 (1074)
T ss_pred hhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 34444444444443222211 12233334666677777777777777666666666 55666666666666666666666
Q ss_pred HHHHHHHhhhh
Q 020751 195 LESKLIEIEGK 205 (322)
Q Consensus 195 Le~Ki~~iE~k 205 (322)
||.-+.++..+
T Consensus 413 ~e~~~~~L~~e 423 (1074)
T KOG0250|consen 413 LEEQINSLREE 423 (1074)
T ss_pred HHHHHHHHHHH
Confidence 66555555433
No 132
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=66.08 E-value=14 Score=32.71 Aligned_cols=15 Identities=13% Similarity=0.255 Sum_probs=9.1
Q ss_pred HHHhhhheeeEEecc
Q 020751 93 VVIVAVGYGYVWWKG 107 (322)
Q Consensus 93 a~iGavGYgYmwWKG 107 (322)
++++++|-+|+||..
T Consensus 7 ~~~a~~~~~~~~~~~ 21 (135)
T TIGR03495 7 LGLLVAGLGWQSQRL 21 (135)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445557778876
No 133
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=65.96 E-value=1.1e+02 Score=35.40 Aligned_cols=79 Identities=11% Similarity=0.194 Sum_probs=46.2
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHH
Q 020751 114 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIV 192 (322)
Q Consensus 114 MfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V 192 (322)
-..-|.++......+...+++.-+.+...+..+.-==..++....+..++...-+.+...++..+..+..+++.+..+.
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 957 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVKNIHGYM 957 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777777777777777777777776666554433444444444444455555555555555555555555555443
No 134
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=65.91 E-value=1.3e+02 Score=29.77 Aligned_cols=85 Identities=14% Similarity=0.198 Sum_probs=37.5
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHH---HHHHHHhHhhhhhhHHHH----HHHHHHHHHHHHHhhcchhhhhhHHHHHHH
Q 020751 118 RRSLSDACNSVARQLEDVYSSISAA---QRQLSSKITSVDRDVNKI----VEISQATQEEVTILRGRSKLIGDEFQSVRD 190 (322)
Q Consensus 118 KRnMsnAv~svtKqLeqVs~sLaaa---KrhLsqRId~vD~klDeq----~eis~~i~~eV~~v~~dls~ig~Dv~~v~~ 190 (322)
.-.|.+--+.+.++++.+.+.+... +..|...+..+..-.+++ .+.-+.+++++.+...+++....++..++.
T Consensus 153 ~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~ 232 (312)
T smart00787 153 LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEE 232 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555556666666555444332 333444444443333332 112233344444444444444444444444
Q ss_pred HHHHHHHHHHHh
Q 020751 191 IVQTLESKLIEI 202 (322)
Q Consensus 191 ~V~~Le~Ki~~i 202 (322)
-+..++.+|...
T Consensus 233 ~l~~l~~~I~~~ 244 (312)
T smart00787 233 ELQELESKIEDL 244 (312)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 135
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=65.50 E-value=16 Score=29.76 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHhcC
Q 020751 56 LLAEVSSVQQELSHV 70 (322)
Q Consensus 56 L~aQV~~LaqElr~L 70 (322)
|+.|.+.|..++++.
T Consensus 18 l~~~~~~l~~~~~E~ 32 (105)
T cd00632 18 YIVQRQKVEAQLNEN 32 (105)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555555554
No 136
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=65.49 E-value=1.3e+02 Score=28.82 Aligned_cols=15 Identities=20% Similarity=0.386 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhcC
Q 020751 56 LLAEVSSVQQELSHV 70 (322)
Q Consensus 56 L~aQV~~LaqElr~L 70 (322)
+.+|+.+|..++..|
T Consensus 86 l~~~~~~l~a~~~~l 100 (423)
T TIGR01843 86 LESQVLRLEAEVARL 100 (423)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777777665
No 137
>TIGR03513 GldL_gliding gliding motility-associated protein GldL. This protein family, GldL, is named for the member from Flavobacterium johnsoniae, which is required for a type of rapid gliding motility found in certain members of the Bacteriodetes. However, members are found also in several members of the Bacteriodetes that appear not to be motile
Probab=65.12 E-value=97 Score=29.27 Aligned_cols=89 Identities=11% Similarity=0.213 Sum_probs=62.0
Q ss_pred chhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHH
Q 020751 112 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 191 (322)
Q Consensus 112 DlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~ 191 (322)
++|=..-.++.+ .+..++.|..+.++..+++ +-++.++.+...|+..+.+-+.--++.+.--....+|..|-+++|+=
T Consensus 103 ~l~esl~~~i~~-~~~aa~~i~~~~~~~~~~~-~Y~eqm~~aa~~l~~LN~~Ye~QL~~as~q~~~~~~i~~na~~fkeQ 180 (202)
T TIGR03513 103 TLMQSLGNGINN-FEGAAKTLAPMTDSYAQQK-KYIEQMSSLAANMEGLNTIYEAQLKGASSHADANNEIAINSSSLKEE 180 (202)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 6677788888999888888 67888999999998888776555554444444455667777777777
Q ss_pred HHHHHHHHHHh
Q 020751 192 VQTLESKLIEI 202 (322)
Q Consensus 192 V~~Le~Ki~~i 202 (322)
++.|-..|.++
T Consensus 181 ~~kLa~NL~sL 191 (202)
T TIGR03513 181 MEKMAANLTSL 191 (202)
T ss_pred HHHHHHHHHHH
Confidence 77777777665
No 138
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=65.10 E-value=42 Score=26.91 Aligned_cols=46 Identities=11% Similarity=0.266 Sum_probs=41.1
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH
Q 020751 117 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 162 (322)
Q Consensus 117 TKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~e 162 (322)
--+||.+-..-|-+-|.|+.+...-.-.++..|||.+...+|+...
T Consensus 10 DpkNmq~LTs~vQ~lLQq~QDkFQtMSDQII~RiDDM~~riDDLEK 55 (73)
T KOG4117|consen 10 DPKNMQDLTSVVQGLLQQTQDKFQTMSDQIIGRIDDMSSRIDDLEK 55 (73)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence 3579999999999999999999999999999999999998887643
No 139
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=64.97 E-value=69 Score=25.59 Aligned_cols=60 Identities=13% Similarity=0.221 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHH
Q 020751 133 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 196 (322)
Q Consensus 133 eqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le 196 (322)
.+|-++|..+++.|.+-+++-...++...+-++.+++-- .....+++-+..=+.++..|+
T Consensus 4 ~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~----~e~~~~~~~l~~s~~ll~~l~ 63 (92)
T PF03908_consen 4 SDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTN----DEYDGQSSLLKKSRKLLKKLE 63 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999888877776666655544322 223345555555565555554
No 140
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=64.93 E-value=72 Score=26.01 Aligned_cols=67 Identities=15% Similarity=0.230 Sum_probs=45.2
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 020751 150 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 216 (322)
Q Consensus 150 Id~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~L 216 (322)
++.+..|+.+..+.+...+=||.+++++=.....++++.++..+.|+..=..+...|..-..-+..|
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777777777777777777777777777776666655554444444444
No 141
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=64.89 E-value=1.2e+02 Score=31.62 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020751 163 ISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 205 (322)
Q Consensus 163 is~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~k 205 (322)
..+.++.|+.+++.+|..+..|+..++..|..|...|...-..
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~e 324 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEE 324 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777777777777777778887777777777654433
No 142
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=64.85 E-value=22 Score=29.55 Aligned_cols=20 Identities=20% Similarity=0.574 Sum_probs=12.3
Q ss_pred HHHHhhhheeeEEeccCCcC
Q 020751 92 IVVIVAVGYGYVWWKGWKLP 111 (322)
Q Consensus 92 ~a~iGavGYgYmwWKGwsfS 111 (322)
++++.+.-+||+||-.+.++
T Consensus 9 l~~lvl~L~~~l~~qs~~i~ 28 (110)
T PF10828_consen 9 LAVLVLGLGGWLWYQSQRID 28 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444556778888766443
No 143
>PRK00295 hypothetical protein; Provisional
Probab=64.78 E-value=29 Score=26.95 Aligned_cols=50 Identities=12% Similarity=0.093 Sum_probs=33.2
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751 146 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 202 (322)
Q Consensus 146 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 202 (322)
+..||..|..|+--|....+...+.|+.-+..+ +.++.-+..|-.|+..+
T Consensus 3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I-------~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00295 3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVI-------ERLQLQMAALIKRQEEM 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHh
Confidence 557888888888888888888888887766654 44444444444555443
No 144
>PRK13694 hypothetical protein; Provisional
Probab=64.68 E-value=34 Score=28.28 Aligned_cols=44 Identities=16% Similarity=0.334 Sum_probs=30.7
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHH
Q 020751 144 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 194 (322)
Q Consensus 144 rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~ 194 (322)
|.+..||++|+ +|-++|+..|++--.++++ -|+|++.++++|.-
T Consensus 15 r~fIERIERLE---eEkk~i~~dikdVyaEAK~----~GfD~K~~r~ii~l 58 (83)
T PRK13694 15 RAFIERIERLE---EEKKTISDDIKDVYAEAKG----NGFDVKALKTIIRL 58 (83)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHH
Confidence 33444555555 5567777777777777766 59999999998853
No 145
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=64.61 E-value=20 Score=29.52 Aligned_cols=59 Identities=17% Similarity=0.361 Sum_probs=36.6
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHH---HHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 020751 127 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI---VEISQATQEEVTILRGRSKLIGDEFQSVR 189 (322)
Q Consensus 127 svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq---~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 189 (322)
+|++++|.+.+.|+..++ |++.|+.+|... .|--+.+.+|.+.+...++.-..++..+|
T Consensus 2 ~V~~eId~lEekl~~cr~----~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~Lr 63 (85)
T PF15188_consen 2 SVAKEIDGLEEKLAQCRR----RLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLR 63 (85)
T ss_pred cHHHHHhhHHHHHHHHHH----HHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 588999999999988876 567788877542 22333444555555554444444444444
No 146
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=64.21 E-value=27 Score=33.14 Aligned_cols=38 Identities=13% Similarity=0.154 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHH
Q 020751 164 SQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 201 (322)
Q Consensus 164 s~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ 201 (322)
....+.||.++|+.+++...+++.+++--..|=..|++
T Consensus 63 l~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 63 LSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666666666666554444444443
No 147
>PRK03918 chromosome segregation protein; Provisional
Probab=63.63 E-value=52 Score=35.30 Aligned_cols=62 Identities=13% Similarity=0.333 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHH---HHHHHhhcchhhhhhHHHHHHHHH
Q 020751 131 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ---EEVTILRGRSKLIGDEFQSVRDIV 192 (322)
Q Consensus 131 qLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~---~eV~~v~~dls~ig~Dv~~v~~~V 192 (322)
.++..++.+...++.+..+|+.+...+.+..++.+.+. .++.++..+++.+...+..+...+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~ 223 (880)
T PRK03918 159 DYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREEL 223 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888889999988888888766655544322 333344444444443333333333
No 148
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.62 E-value=40 Score=32.97 Aligned_cols=55 Identities=11% Similarity=0.256 Sum_probs=26.0
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020751 150 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 204 (322)
Q Consensus 150 Id~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~ 204 (322)
|++=|.++.+..+-.+.+++||..+...++.+...+++.+.-+..++.+|..++.
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~ 87 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQK 87 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555555555555444444444444444444444444444433333
No 149
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=63.27 E-value=39 Score=33.58 Aligned_cols=55 Identities=9% Similarity=0.297 Sum_probs=28.2
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751 145 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 202 (322)
Q Consensus 145 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 202 (322)
++.++|.+++..+.++....+.-++-++.+... +..-++.|+.-|..||.||..+
T Consensus 333 ~~~~~l~~le~~q~~l~~~l~~~~~~L~~ve~~---~~~N~~~i~~n~~~le~Ri~~L 387 (388)
T PF04912_consen 333 EFSQTLSELESQQSDLQSQLKKWEELLNKVEEK---FKENMETIEKNVKKLEERIAKL 387 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhcc
Confidence 444555555555444444444444444444443 4455555666666666666543
No 150
>PRK09110 flagellar motor protein MotA; Validated
Probab=63.01 E-value=55 Score=31.89 Aligned_cols=93 Identities=15% Similarity=0.179 Sum_probs=70.7
Q ss_pred HHHHHHHhhhheeeEEecc-----CCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh---HhhhhhhHHHH
Q 020751 89 YGVIVVIVAVGYGYVWWKG-----WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK---ITSVDRDVNKI 160 (322)
Q Consensus 89 y~l~a~iGavGYgYmwWKG-----wsfSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqR---Id~vD~klDeq 160 (322)
.++++++|++.+||++=.| |.++-+|-|-=-.+ ++.-++--+..+-.++...|+-+..+ -+...+-++..
T Consensus 5 iGli~~~~~i~~g~~l~gg~~~~l~~~~~~lIV~Ggtl--ga~lv~~p~~~i~~~~k~~~~~f~~~~~~~~~~~~li~~l 82 (283)
T PRK09110 5 IGYIVVLGSVFGGYLLAGGHLGALIQPAELLIIGGAAL--GAFIVGNPGKAIKATLKALPKLFKGPKYKKADYMDLLALL 82 (283)
T ss_pred HHHHHHHHHHHHHHHHcCCChhHhhchhHHHHHHHhHH--HHHHHcCCHHHHHHHHHHHHHHhcCCCCCccCHHHHHHHH
Confidence 4567788899999998666 77888888876544 44557778899999999999988744 66777888888
Q ss_pred HHHHHHHHHH-HHHhhcchhhhhh
Q 020751 161 VEISQATQEE-VTILRGRSKLIGD 183 (322)
Q Consensus 161 ~eis~~i~~e-V~~v~~dls~ig~ 183 (322)
.+++...|++ +-.+..+++++.+
T Consensus 83 ~~l~~~aRk~GllaLE~~v~~~~~ 106 (283)
T PRK09110 83 YELLRKARQEGMMALEAHIENPEE 106 (283)
T ss_pred HHHHHHHHhcCHHHHHhhhcCccc
Confidence 8988888887 5566666666653
No 151
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=62.99 E-value=98 Score=33.27 Aligned_cols=91 Identities=13% Similarity=0.180 Sum_probs=76.8
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHH
Q 020751 119 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 198 (322)
Q Consensus 119 RnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 198 (322)
.-|...|.+-...|.++..--...|+-|...+..+..+.+....=++.-.++|..+|..+..+-.|++.=.+....|...
T Consensus 397 ~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e 476 (594)
T PF05667_consen 397 AKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKE 476 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588888889999999999999999999999999988887777777777889999999999999999989999999888
Q ss_pred HHHhhhhhhHH
Q 020751 199 LIEIEGKQDIT 209 (322)
Q Consensus 199 i~~iE~kQd~T 209 (322)
+.++...-+++
T Consensus 477 ~e~~~k~~~Rs 487 (594)
T PF05667_consen 477 LEKLPKDVNRS 487 (594)
T ss_pred HHhCCCCCCHH
Confidence 88887664443
No 152
>PRK04325 hypothetical protein; Provisional
Probab=62.80 E-value=32 Score=27.16 Aligned_cols=52 Identities=8% Similarity=0.148 Sum_probs=35.9
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020751 145 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 145 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
.+..||+.|..|+--|....+...+.|++-+..+ +.++.-+.-|-.|+.+++
T Consensus 6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I-------~~L~~ql~~L~~rl~~~~ 57 (74)
T PRK04325 6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTL-------DLLQAQLRLLYQQMRDAN 57 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhc
Confidence 4778888888888888888888888887766654 444444444445655543
No 153
>PRK00736 hypothetical protein; Provisional
Probab=62.02 E-value=31 Score=26.78 Aligned_cols=50 Identities=8% Similarity=0.224 Sum_probs=34.0
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751 146 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 202 (322)
Q Consensus 146 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 202 (322)
+..||+.|..|+--|....+...+.|+.-+.. |+.++.-+..|-.|+..+
T Consensus 3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~-------i~~L~~ql~~L~~rl~~~ 52 (68)
T PRK00736 3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKT-------VEQMRKKLDALTERFLSL 52 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 45788888888888888888888888766665 444444444444555554
No 154
>PRK03918 chromosome segregation protein; Provisional
Probab=61.96 E-value=98 Score=33.23 Aligned_cols=11 Identities=0% Similarity=0.465 Sum_probs=4.2
Q ss_pred HhHhhhhhhHH
Q 020751 148 SKITSVDRDVN 158 (322)
Q Consensus 148 qRId~vD~klD 158 (322)
.+|+.+..+++
T Consensus 640 ~~i~~l~~~~~ 650 (880)
T PRK03918 640 KRLEELRKELE 650 (880)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 155
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=61.81 E-value=36 Score=28.08 Aligned_cols=48 Identities=10% Similarity=0.214 Sum_probs=37.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhc
Q 020751 125 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 176 (322)
Q Consensus 125 v~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~ 176 (322)
++.|-.+|+++..+| .||-+|-|+|-.+|.+..+-.++|+.+..+-..
T Consensus 28 ~~~ins~LD~Lns~L----D~LE~rnD~l~~~L~~LLesnrq~R~e~~~~~~ 75 (83)
T PF03670_consen 28 YAAINSMLDQLNSCL----DHLEQRNDHLHAQLQELLESNRQIRLEFQEQLS 75 (83)
T ss_pred HHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 566777787766555 689999999999999999999999888755443
No 156
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=61.76 E-value=67 Score=31.46 Aligned_cols=70 Identities=10% Similarity=0.164 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020751 134 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 134 qVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
+--..|...+.+|.+.|..+..+.++..+-....-.+.+..+.++.++.++.+++..-..-...+|++++
T Consensus 64 ~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 64 QELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455566666677777777777766666677777777777777777888888777777777777665
No 157
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=61.69 E-value=35 Score=34.61 Aligned_cols=15 Identities=13% Similarity=0.368 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHhc
Q 020751 55 DLLAEVSSVQQELSH 69 (322)
Q Consensus 55 dL~aQV~~LaqElr~ 69 (322)
+|..+..+|.+++..
T Consensus 231 ~L~~~ltrL~~~~~~ 245 (370)
T PLN03094 231 ELVGICTRLAREMEA 245 (370)
T ss_pred HHHHHHHHHHHHhhh
Confidence 366666666666654
No 158
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=61.29 E-value=1.1e+02 Score=26.46 Aligned_cols=97 Identities=16% Similarity=0.184 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH---HhhcchhhhhhHHHHHH------
Q 020751 119 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT---ILRGRSKLIGDEFQSVR------ 189 (322)
Q Consensus 119 RnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~---~v~~dls~ig~Dv~~v~------ 189 (322)
..|++++..+++.++.+++.....-++. ...+-+-|++.......+++-+. .+..++.....++...+
T Consensus 60 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~L~~y~~~~~s~k~~l~~R~~~~~~~~~~~~~l~~k~~~~~kl 136 (218)
T cd07596 60 GELGEALSKLGKAAEELSSLSEAQANQE---LVKLLEPLKEYLRYCQAVKETLDDRADALLTLQSLKKDLASKKAQLEKL 136 (218)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999988888877655444 33455555555555554444322 23333333444443333
Q ss_pred --------HHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 020751 190 --------DIVQTLESKLIEIEGKQDITTLGVKKLCD 218 (322)
Q Consensus 190 --------~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~ 218 (322)
..|..|+.+|...|.....+..-...+|+
T Consensus 137 ~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~ 173 (218)
T cd07596 137 KAAPGIKPAKVEELEEELEEAESALEEARKRYEEISE 173 (218)
T ss_pred hhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445555555555555555544444443
No 159
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=60.61 E-value=84 Score=33.31 Aligned_cols=43 Identities=5% Similarity=0.092 Sum_probs=19.8
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Q 020751 146 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 188 (322)
Q Consensus 146 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v 188 (322)
+..+++.++.+++++.+-.+..+.+...++.+++.+..+++.+
T Consensus 426 l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 426 LLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444333
No 160
>cd07912 Tweety_N N-terminal domain of the protein encoded by the Drosophila tweety gene and related proteins, a family of chloride ion channels. The protein product of the Drosophila tweety (tty) gene is thought to form a trans-membrane protein with five membrane-spanning regions and a cytoplasmic C-terminus. This N-terminal domain contains the putative transmembrane spanning regions. Tweety has been suggested as a candidate for a large conductance chloride channel, both in vertebrate and insect cells. Three human homologs have been identified and designated TTYH1-3. TTYH2 has been associated with the progression of cancer, and Drosophila melanogaster tweety has been assumed to play a role in development. TTYH2, and TTYH3 bind to and are ubiquinated by Nedd4-2, a HECT type E3 ubiquitin ligase, which most likely plays a role in controlling the cellular levels of tweety family proteins.
Probab=60.37 E-value=44 Score=34.37 Aligned_cols=83 Identities=17% Similarity=0.169 Sum_probs=45.1
Q ss_pred HHhhhheeeEEeccCCcCchhhhhhhh---HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHH------HHHHHH
Q 020751 94 VIVAVGYGYVWWKGWKLPDMMFATRRS---LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVN------KIVEIS 164 (322)
Q Consensus 94 ~iGavGYgYmwWKGwsfSDlMfVTKRn---MsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klD------eq~eis 164 (322)
...|+++||. ---+|.|=+.-|+.. ..+.++++.+|.+.+.+++..+++ +-++++++.++ +-..+.
T Consensus 93 ~~aaIi~~f~--GN~~~h~gV~~t~~si~~an~tv~~l~nqv~~l~~al~~t~~---~~L~~L~~il~~~~~~~~~~~~~ 167 (418)
T cd07912 93 CCAAIGVGLY--GNDETHDGVVQLTYSLRNANHTVAGIDNQTSDTEASLNVTVE---PQLTNLEDIFDARVNKTDYLQIV 167 (418)
T ss_pred HHHHHHHHhh--ccHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hhHhHHHHHhCCCcchhhHHHHH
Confidence 4456666543 233455544444444 467777888888888888888776 34445544333 222233
Q ss_pred HHHHHHHHHhhcchhhh
Q 020751 165 QATQEEVTILRGRSKLI 181 (322)
Q Consensus 165 ~~i~~eV~~v~~dls~i 181 (322)
+.++.+++.+..++..+
T Consensus 168 ~~~q~~~~n~~~~~~~~ 184 (418)
T cd07912 168 QGLQQMATNAAQQLTGI 184 (418)
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 44444444444444444
No 161
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=60.21 E-value=50 Score=30.44 Aligned_cols=64 Identities=17% Similarity=0.274 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020751 134 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 204 (322)
Q Consensus 134 qVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~ 204 (322)
||+..|+.+-.+|.+.+|.....|++ =++++.+++ ..++.+....+.++.-+.-|+..|+..+.
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~~eL~~---eI~~L~~~i----~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTKNELED---EIKQLEKEI----QRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp --------HHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777666555444432 222233333 22355556667777777777777776653
No 162
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.16 E-value=36 Score=27.48 Aligned_cols=38 Identities=5% Similarity=0.017 Sum_probs=30.0
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhh
Q 020751 143 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 180 (322)
Q Consensus 143 KrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ 180 (322)
...|-+||..|.+++--|....+.+.+.|++-+-.+++
T Consensus 3 ~~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k 40 (72)
T COG2900 3 DMELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDK 40 (72)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999988888888888776665333
No 163
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=60.06 E-value=1.5e+02 Score=29.70 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 020751 184 EFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 184 Dv~~v~~~V~~Le~Ki~~iE 203 (322)
++..|+..+..|..||...+
T Consensus 325 Ev~~l~~~i~~L~~~L~~a~ 344 (384)
T PF03148_consen 325 EVKELRESIEALQEKLDEAE 344 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444433
No 164
>COG5283 Phage-related tail protein [Function unknown]
Probab=59.93 E-value=89 Score=36.45 Aligned_cols=91 Identities=13% Similarity=0.157 Sum_probs=74.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH---HhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHH
Q 020751 121 LSDACNSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 197 (322)
Q Consensus 121 MsnAv~svtKqLeqVs~sLaaaKrhLs---qRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 197 (322)
|-+++...++--....+.+..||+-|+ .|.+.+-+.|++++..-+..++|+.|+-+.+...+.+.+.+..-....|.
T Consensus 27 L~ssi~~~~~~~k~~e~q~k~t~~~ls~s~~k~~~l~eameK~k~~~~~~kqe~~evn~at~a~~kay~e~~~q~tqae~ 106 (1213)
T COG5283 27 LKSSIKDSTQFWKMLEKQQKLTKDGLSASKGKYEGLSEAMEKQKKAYEDLKQEVKEVNRATQASKKAYQEYNAQYTQAEN 106 (1213)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555556666554 68899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhHHhH
Q 020751 198 KLIEIEGKQDITTL 211 (322)
Q Consensus 198 Ki~~iE~kQd~Tn~ 211 (322)
++.++...++.+-.
T Consensus 107 ~~~sas~q~~~a~~ 120 (1213)
T COG5283 107 KLRSLSGQFGVASE 120 (1213)
T ss_pred HHHHHHhhhchhhH
Confidence 99999999887743
No 165
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=59.86 E-value=52 Score=22.88 Aligned_cols=42 Identities=12% Similarity=0.148 Sum_probs=21.2
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 020751 148 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 189 (322)
Q Consensus 148 qRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 189 (322)
+.|+.+...+-++..+...|..+|.+=..-+.+|...++..+
T Consensus 6 ~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~ 47 (60)
T cd00193 6 EELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNAD 47 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556666666666555444433444444443333
No 166
>PRK10698 phage shock protein PspA; Provisional
Probab=59.24 E-value=1.5e+02 Score=27.57 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=27.5
Q ss_pred HHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020751 167 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 207 (322)
Q Consensus 167 i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd 207 (322)
..+.+..++..+.....-++.++.-+..|+.||.....+++
T Consensus 97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~ 137 (222)
T PRK10698 97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQ 137 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666677777777777777777776665
No 167
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.07 E-value=46 Score=36.86 Aligned_cols=26 Identities=15% Similarity=0.367 Sum_probs=16.5
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHH
Q 020751 141 AAQRQLSSKITSVDRDVNKIVEISQA 166 (322)
Q Consensus 141 aaKrhLsqRId~vD~klDeq~eis~~ 166 (322)
.....+..+|.++|++|+....-++.
T Consensus 40 ~li~ki~~eir~~d~~l~~~Vr~q~N 65 (793)
T KOG2180|consen 40 SLIQKIQGEIRRVDKNLLAVVRTQEN 65 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33445667788888887776555443
No 168
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=58.96 E-value=32 Score=26.48 Aligned_cols=15 Identities=7% Similarity=0.472 Sum_probs=8.9
Q ss_pred HHHHhHhhhhhhHHH
Q 020751 145 QLSSKITSVDRDVNK 159 (322)
Q Consensus 145 hLsqRId~vD~klDe 159 (322)
++.+||.+++.++|+
T Consensus 3 ~i~e~l~~ie~~l~~ 17 (71)
T PF10779_consen 3 DIKEKLNRIETKLDN 17 (71)
T ss_pred HHHHHHHHHHHHHHH
Confidence 455566666666665
No 169
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=58.91 E-value=1.7e+02 Score=28.98 Aligned_cols=36 Identities=25% Similarity=0.273 Sum_probs=15.4
Q ss_pred HHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020751 170 EVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 205 (322)
Q Consensus 170 eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~k 205 (322)
+...+|.++.....++...+.-+..++..+..++.+
T Consensus 205 eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~ 240 (312)
T smart00787 205 ELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESK 240 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444433
No 170
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=58.58 E-value=91 Score=31.04 Aligned_cols=17 Identities=12% Similarity=-0.036 Sum_probs=13.7
Q ss_pred HHHHhhhheeeEEeccC
Q 020751 92 IVVIVAVGYGYVWWKGW 108 (322)
Q Consensus 92 ~a~iGavGYgYmwWKGw 108 (322)
++++|+.||.|.++-..
T Consensus 40 ~~alg~~~~~~~~~q~~ 56 (372)
T PF04375_consen 40 ALALGAGGWYWQQQQLQ 56 (372)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 36999999999988653
No 171
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=58.51 E-value=77 Score=33.86 Aligned_cols=93 Identities=6% Similarity=0.143 Sum_probs=59.6
Q ss_pred CcCchhhhhhhhHHHHHH-----------HHHHhHHHHHHHHHHHHHHHHHhHhhhhh--------hHHHHHHHHHHHHH
Q 020751 109 KLPDMMFATRRSLSDACN-----------SVARQLEDVYSSISAAQRQLSSKITSVDR--------DVNKIVEISQATQE 169 (322)
Q Consensus 109 sfSDlMfVTKRnMsnAv~-----------svtKqLeqVs~sLaaaKrhLsqRId~vD~--------klDeq~eis~~i~~ 169 (322)
.-++.+.-+-+.|+++.+ .+.-|+..|+.-+.-..+.|..||..+.. .+++.....+.+..
T Consensus 333 Qe~~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEqtL~~rL~e~~~e~~~~~r~~lekl~~~q~e~~~ 412 (531)
T PF15450_consen 333 QETQSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQTLNLRLSEAKNEWESDERKSLEKLDQWQNEMEK 412 (531)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677788888777642 33344444555555566677777766653 34556666777777
Q ss_pred HHHHhhcchhhhhhHHHHHHHHH----HHHHHHHHH
Q 020751 170 EVTILRGRSKLIGDEFQSVRDIV----QTLESKLIE 201 (322)
Q Consensus 170 eV~~v~~dls~ig~Dv~~v~~~V----~~Le~Ki~~ 201 (322)
...++++.++.+..||+.|.... ..++.||+.
T Consensus 413 ~l~~v~eKVd~LpqqI~~vs~Kc~~~Ksd~d~kIdt 448 (531)
T PF15450_consen 413 HLKEVQEKVDSLPQQIEEVSDKCDLHKSDSDTKIDT 448 (531)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhhhccH
Confidence 77788888888888888777653 344555553
No 172
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=58.41 E-value=82 Score=24.14 Aligned_cols=60 Identities=10% Similarity=0.284 Sum_probs=30.1
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020751 141 AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 141 aaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
...+.|.+.|+..+..|.. +...=-.+.-.+-+.+..+..++..++..+..|...+..+.
T Consensus 26 ~~~~~L~~~i~~~~~eLr~---~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~~l~ 85 (87)
T PF08700_consen 26 QLENKLRQEIEEKDEELRK---LVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQSLQ 85 (87)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3334444555444443322 22222333444555555666666666666666666666554
No 173
>PRK04098 sec-independent translocase; Provisional
Probab=58.17 E-value=31 Score=31.33 Aligned_cols=57 Identities=18% Similarity=0.280 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhc
Q 020751 119 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 176 (322)
Q Consensus 119 RnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~ 176 (322)
.-|-.+...+++-+..+-..+..+|.++.+-|. +++--++.....+.+.+.+..+|.
T Consensus 23 ~KLP~~~r~lGk~ir~~K~~~~~~k~~l~~Ei~-~~elk~e~~k~k~~l~~~~~~l~~ 79 (158)
T PRK04098 23 DKLPQAMVDIAKFFKAVKKTINDAKSTLDKEIN-IEEIKEEALKYKKEFESAVESLKK 79 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346777788888888888888889888887653 222222333344555555555554
No 174
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=57.85 E-value=60 Score=27.77 Aligned_cols=15 Identities=7% Similarity=0.302 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHhcC
Q 020751 56 LLAEVSSVQQELSHV 70 (322)
Q Consensus 56 L~aQV~~LaqElr~L 70 (322)
+..+++.+...++.|
T Consensus 31 ~~~~~~~~~~~~~~l 45 (229)
T PF03114_consen 31 LEEKFKQLEESIKKL 45 (229)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777888888888777
No 175
>COG1256 FlgK Flagellar hook-associated protein [Cell motility and secretion]
Probab=57.82 E-value=78 Score=33.65 Aligned_cols=83 Identities=14% Similarity=0.349 Sum_probs=65.2
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHH
Q 020751 116 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 195 (322)
Q Consensus 116 VTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~L 195 (322)
+.|..+-..-..++.++.+.++.|..-++.+...|...-+++....+-...+.+++..+ ...|.+...+.+--..|
T Consensus 131 a~r~~vl~~a~~l~~~in~~~~~L~~l~~~i~~~I~~~V~~vNsLl~qIa~lN~qI~~~----~~~g~~~NdLlDqRD~L 206 (552)
T COG1256 131 AARQAVLSKAQTLVNQINNTYEQLTDLRKDINAEIAATVDEVNSLLKQIADLNKQIRKV----KAAGNDPNDLLDQRDQL 206 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCCCCchhHHHHHHHH
Confidence 66777888888999999999999999999999888887777777777777777777666 56677777777777777
Q ss_pred HHHHHHh
Q 020751 196 ESKLIEI 202 (322)
Q Consensus 196 e~Ki~~i 202 (322)
..+|..+
T Consensus 207 v~eLs~~ 213 (552)
T COG1256 207 VDELSQL 213 (552)
T ss_pred HHHHHhh
Confidence 7777654
No 176
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=57.73 E-value=95 Score=25.92 Aligned_cols=19 Identities=0% Similarity=0.303 Sum_probs=10.5
Q ss_pred HHHHHHHHhHHHHHHHHHH
Q 020751 123 DACNSVARQLEDVYSSISA 141 (322)
Q Consensus 123 nAv~svtKqLeqVs~sLaa 141 (322)
+-|..|..+|..+...+..
T Consensus 6 ~~v~~I~~~i~~i~~~v~~ 24 (151)
T cd00179 6 EEVEEIRGNIDKISEDVEE 24 (151)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456666666666555433
No 177
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=57.60 E-value=1.4e+02 Score=28.18 Aligned_cols=90 Identities=18% Similarity=0.292 Sum_probs=61.4
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHH---HHHhHhhhhhhHHHHHHHHH--HHHHHHHHhhcchhhhhhHHHHHH
Q 020751 115 FATRRSLSDACNSVARQLEDVYSSISAAQRQ---LSSKITSVDRDVNKIVEISQ--ATQEEVTILRGRSKLIGDEFQSVR 189 (322)
Q Consensus 115 fVTKRnMsnAv~svtKqLeqVs~sLaaaKrh---LsqRId~vD~klDeq~eis~--~i~~eV~~v~~dls~ig~Dv~~v~ 189 (322)
---+.++.+.+...-++++++.+.+..-|+. |.++|..+..+++..++... .....|...-++.+. ++.+..+.
T Consensus 91 l~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA~~~v~~~~~~~s~-~sa~~~fe 169 (225)
T COG1842 91 LEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKAQEKVNRSLGGGSS-SSAMAAFE 169 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhhHHHHH
Confidence 3446788889988888888888888877764 45688888877776665433 344557777776666 45554444
Q ss_pred HHHHHHHHHHHHhhhhhhHH
Q 020751 190 DIVQTLESKLIEIEGKQDIT 209 (322)
Q Consensus 190 ~~V~~Le~Ki~~iE~kQd~T 209 (322)
-+|.||+++|..=+..
T Consensus 170 ----r~e~kiee~ea~a~~~ 185 (225)
T COG1842 170 ----RMEEKIEEREARAEAA 185 (225)
T ss_pred ----HHHHHHHHHHHHHHHh
Confidence 5577777777664443
No 178
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=57.39 E-value=88 Score=31.49 Aligned_cols=22 Identities=27% Similarity=0.367 Sum_probs=14.9
Q ss_pred cccccccchhhccccchhhHHH
Q 020751 291 RPLASRSSMELQNWGSHQGVLR 312 (322)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~ 312 (322)
|.|..|..|++-.||.|.++-|
T Consensus 239 ~AlG~~~~mdvt~eG~~s~~~~ 260 (330)
T PF07851_consen 239 RALGKRHNMDVTVEGFQSWMWR 260 (330)
T ss_pred HHhccCccceeeecccccchhc
Confidence 4566677777777777776654
No 179
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=57.37 E-value=84 Score=23.96 Aligned_cols=61 Identities=10% Similarity=0.230 Sum_probs=35.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhh---hHHHHHHHHHHHHHHHHHhhcchhhh
Q 020751 121 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDR---DVNKIVEISQATQEEVTILRGRSKLI 181 (322)
Q Consensus 121 MsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~---klDeq~eis~~i~~eV~~v~~dls~i 181 (322)
+-+-|..+...|+.+...+..-++--...+-..+. --++..+++..|+.....++..|..+
T Consensus 5 f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l 68 (103)
T PF00804_consen 5 FFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQL 68 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888888888877766766666662 22333334444444444444433333
No 180
>PHA01750 hypothetical protein
Probab=56.91 E-value=34 Score=27.56 Aligned_cols=31 Identities=16% Similarity=0.438 Sum_probs=22.5
Q ss_pred hhhhhhhhHHHHHHHHH-HhHHHHHHHHHHHH
Q 020751 113 MMFATRRSLSDACNSVA-RQLEDVYSSISAAQ 143 (322)
Q Consensus 113 lMfVTKRnMsnAv~svt-KqLeqVs~sLaaaK 143 (322)
+-|--|..+.||+..+- +-|+++-..|+++|
T Consensus 24 lYlKIKq~lkdAvkeIV~~ELdNL~~ei~~~k 55 (75)
T PHA01750 24 LYLKIKQALKDAVKEIVNSELDNLKTEIEELK 55 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566888999998754 45777777777766
No 181
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=56.75 E-value=1.7e+02 Score=27.29 Aligned_cols=7 Identities=29% Similarity=0.468 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 020751 189 RDIVQTL 195 (322)
Q Consensus 189 ~~~V~~L 195 (322)
+.++..+
T Consensus 233 ~~~l~~l 239 (291)
T TIGR00996 233 DDALAAL 239 (291)
T ss_pred HHHHHHH
Confidence 3333333
No 182
>PF04344 CheZ: Chemotaxis phosphatase, CheZ; InterPro: IPR007439 This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterised by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site. ; GO: 0003824 catalytic activity, 0050920 regulation of chemotaxis, 0009288 bacterial-type flagellum; PDB: 1KMI_Z 2FMK_B 2PMC_F.
Probab=56.72 E-value=1.3e+02 Score=27.93 Aligned_cols=116 Identities=27% Similarity=0.313 Sum_probs=64.9
Q ss_pred hhHHHHHHHHH--HhH-HHHHHHHHHHHHHHHHhH-------hhhhhhHHHHHHHHHHHHHHHHHhhcchhhh-------
Q 020751 119 RSLSDACNSVA--RQL-EDVYSSISAAQRQLSSKI-------TSVDRDVNKIVEISQATQEEVTILRGRSKLI------- 181 (322)
Q Consensus 119 RnMsnAv~svt--KqL-eqVs~sLaaaKrhLsqRI-------d~vD~klDeq~eis~~i~~eV~~v~~dls~i------- 181 (322)
|.|-+|...++ +.+ +...+.|-.||.+|.-=| .++=+.+|....++..+.+++.++.....++
T Consensus 13 R~Lhdal~~l~~d~~~~~~~~~~ipdA~~rL~yV~~~TE~AA~~~l~~ve~~~p~~~~l~~~~~~l~~~w~~l~~~~~~~ 92 (214)
T PF04344_consen 13 RQLHDALRELGLDPRLMEEAAEEIPDARDRLNYVITMTEQAANRTLNAVEEALPLQDELREEAEELKARWQRLMARELEP 92 (214)
T ss_dssp HHHHHHHHHHTHHHHH-HHTTTTHHHHHHHTTTHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS--H
T ss_pred HHHHHHHHHcCCChhhHHHHHhhCccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccH
Confidence 44555555543 334 556667777777664322 2344455666666666666666655432221
Q ss_pred ----------hhHHHHHHHHHHHHHHHHHHhh---hhhhHHhHHHHHHHHHHHhhccCCCccceec
Q 020751 182 ----------GDEFQSVRDIVQTLESKLIEIE---GKQDITTLGVKKLCDRARELENGRPTELVQA 234 (322)
Q Consensus 182 ----------g~Dv~~v~~~V~~Le~Ki~~iE---~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~Q~ 234 (322)
..-+..+.+....++.++-+|= .=||+|-+=|..++..++.+|..-..-+.--
T Consensus 93 ~e~~~l~~~~~~~l~~~~~~~~~~~~~l~eIm~Aq~FQDLTGQ~IkKVv~~l~~vE~~L~~ll~~~ 158 (214)
T PF04344_consen 93 DEFRELAHETDAFLQQVEENAQQLRAQLTEIMMAQDFQDLTGQRIKKVVNLLQEVEERLVQLLVIF 158 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTTT---
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1122223333333333433332 3499999999999999999888777666543
No 183
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=56.36 E-value=1.3e+02 Score=25.78 Aligned_cols=88 Identities=14% Similarity=0.178 Sum_probs=59.2
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHH
Q 020751 116 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 195 (322)
Q Consensus 116 VTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~L 195 (322)
.+..++.+.|+.|-.=|. -.+.=...+..|..++.+++..++....-.+..++++.+....+.....+...++..+..+
T Consensus 28 ~~~~~~~~vin~i~~Ll~-~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~ 106 (151)
T PF11559_consen 28 ESEDNDVRVINCIYDLLQ-QRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSL 106 (151)
T ss_pred cccccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555444442 2334455677778888888888888877777778888777777777777777777777777
Q ss_pred HHHHHHhhh
Q 020751 196 ESKLIEIEG 204 (322)
Q Consensus 196 e~Ki~~iE~ 204 (322)
+.++.....
T Consensus 107 ~~~~k~~ke 115 (151)
T PF11559_consen 107 EAKLKQEKE 115 (151)
T ss_pred HHHHHHHHH
Confidence 777665544
No 184
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=56.35 E-value=77 Score=27.32 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=19.4
Q ss_pred hhhHHHHHHHHHHhHHHHH---HHHHHHHHHHHHhHhhhhhhHHHHH
Q 020751 118 RRSLSDACNSVARQLEDVY---SSISAAQRQLSSKITSVDRDVNKIV 161 (322)
Q Consensus 118 KRnMsnAv~svtKqLeqVs---~sLaaaKrhLsqRId~vD~klDeq~ 161 (322)
|-.++|=.+++...||+.- +-|.+-|+.|....+.+...-+...
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~ 57 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRN 57 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555443 2344444554444444444333333
No 185
>PLN02678 seryl-tRNA synthetase
Probab=56.26 E-value=44 Score=34.55 Aligned_cols=63 Identities=11% Similarity=0.195 Sum_probs=32.7
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020751 139 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 205 (322)
Q Consensus 139 LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~k 205 (322)
+-.-+|.+..+++.+..+ .++++++|... ..-.++.+.+..++..+..-+..||.++..++.+
T Consensus 38 ld~~~r~l~~~~e~lr~e---rN~~sk~I~~~-k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~ 100 (448)
T PLN02678 38 LDKEWRQRQFELDSLRKE---FNKLNKEVAKL-KIAKEDATELIAETKELKKEITEKEAEVQEAKAA 100 (448)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777766654 55666666541 1222333444444455554445555555555444
No 186
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=56.25 E-value=29 Score=37.15 Aligned_cols=29 Identities=17% Similarity=0.157 Sum_probs=12.4
Q ss_pred HHHHHHHhhcchhhhhhHHHHHHHHHHHH
Q 020751 167 TQEEVTILRGRSKLIGDEFQSVRDIVQTL 195 (322)
Q Consensus 167 i~~eV~~v~~dls~ig~Dv~~v~~~V~~L 195 (322)
....+..+...++......+.+++.+..|
T Consensus 383 ~~~~l~~le~~l~~~~~~~~~L~~~~~~l 411 (656)
T PRK06975 383 LDSQFAQLDGKLADAQSAQQALEQQYQDL 411 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333344444445555554433
No 187
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=56.25 E-value=32 Score=30.07 Aligned_cols=68 Identities=18% Similarity=0.288 Sum_probs=43.4
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHH
Q 020751 145 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLC 217 (322)
Q Consensus 145 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC 217 (322)
+=.++++.|..|+-..+.++-.|.+||..--.-+..+++|+++-.-...+==+++..+... .|+..+|
T Consensus 33 ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~-----sg~~l~~ 100 (118)
T KOG3385|consen 33 ENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARR-----SGISLLC 100 (118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhc-----CCcchHH
Confidence 3345566666666666777777777776666667777777776665555444555555433 6777777
No 188
>COG3165 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=56.20 E-value=43 Score=31.70 Aligned_cols=66 Identities=24% Similarity=0.389 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH--HHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020751 134 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE--VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 205 (322)
Q Consensus 134 qVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~e--V~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~k 205 (322)
.+..++....|.+++-+..+... +.+.|-|| +.-=+..+..|-+|++.+++-|.-||.||+++|.|
T Consensus 134 ~~~~~l~~~~~~l~~~~~~~q~~------~Ae~iTEE~r~~v~~~ela~f~~evd~lr~~~~rL~~RL~rLe~k 201 (204)
T COG3165 134 SVVRALRSGSRFLKHGLKQLQRN------LAEAITEEWRMAVGPLELADFAEEVDALRDAVERLEARLERLERK 201 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHhcchhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555443322 22333343 22234567889999999999999999999999976
No 189
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=56.15 E-value=32 Score=31.96 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=24.2
Q ss_pred HHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 020751 167 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 200 (322)
Q Consensus 167 i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 200 (322)
.-+|+-++...|+++..|+++++.-...|+.+++
T Consensus 160 ~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 160 TVEDLLEIERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4556777777777888888887766666666655
No 190
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=56.04 E-value=94 Score=29.88 Aligned_cols=76 Identities=11% Similarity=0.098 Sum_probs=60.6
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHH
Q 020751 145 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA 220 (322)
Q Consensus 145 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~f~ 220 (322)
++.-++|.++.+|-....|...+.++..++..|..+.+-=+...-.+=.+|+..|..+...-+.+..|+..|-++.
T Consensus 55 e~~ey~d~l~~~l~~ieki~~Rv~kr~~~l~~d~~e~~~~f~~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~ 130 (240)
T cd07667 55 AIGDYLDTFALKLGTIDRIAQRIIKEEIEYLVELREYGPVYSTWSGLEGELAEPLEGVSACIGNCSTALEELTEDM 130 (240)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4567889999999999999999999988888877777776666666667788888888887777777777776644
No 191
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=56.02 E-value=1.1e+02 Score=24.70 Aligned_cols=8 Identities=13% Similarity=0.526 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 020751 192 VQTLESKL 199 (322)
Q Consensus 192 V~~Le~Ki 199 (322)
|..++.+|
T Consensus 86 v~~~~~~i 93 (97)
T PF09177_consen 86 VSAIRNQI 93 (97)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 192
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=55.97 E-value=1e+02 Score=31.36 Aligned_cols=67 Identities=16% Similarity=0.253 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcc-hhhhhhHHHHHHHHHHHHHHHHHHhhhhhhH
Q 020751 138 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR-SKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 208 (322)
Q Consensus 138 sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~d-ls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~ 208 (322)
.+-..+|.+..+++++. .+.++++++|+.... -.++ .+.+..++..+++-+..||.++..++.+.+.
T Consensus 34 ~ld~~~r~~~~~~~~l~---~erN~~sk~i~~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 101 (418)
T TIGR00414 34 ALDDERKKLLSEIEELQ---AKRNELSKQIGKAKG-QKKDKIEEIKKELKELKEELTELSAALKALEAELQD 101 (418)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777765 567778888866321 1123 4455555566665556666666666555443
No 193
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=55.53 E-value=52 Score=27.84 Aligned_cols=30 Identities=20% Similarity=0.412 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020751 118 RRSLSDACNSVARQLEDVYSSISAAQRQLS 147 (322)
Q Consensus 118 KRnMsnAv~svtKqLeqVs~sLaaaKrhLs 147 (322)
||++-++++.+.+||.+.++.|.+-|+++.
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~ 32 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQ 32 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555554443
No 194
>PRK12704 phosphodiesterase; Provisional
Probab=55.30 E-value=89 Score=32.82 Aligned_cols=15 Identities=40% Similarity=0.818 Sum_probs=7.0
Q ss_pred CCCCccchhhccccccc
Q 020751 275 XXIPMDLIRLTGRIVSR 291 (322)
Q Consensus 275 ~~~~~~~~~~~~~~~~~ 291 (322)
..+|.|= +.|||..|
T Consensus 214 v~lp~d~--mkgriigr 228 (520)
T PRK12704 214 VNLPNDE--MKGRIIGR 228 (520)
T ss_pred eecCCch--hhcceeCC
Confidence 4455543 23555544
No 195
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=55.00 E-value=1.7e+02 Score=26.83 Aligned_cols=84 Identities=13% Similarity=0.155 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHhHh-hhhhhHHHHHHHHHHHHHH---HHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHH
Q 020751 137 SSISAAQRQLSSKIT-SVDRDVNKIVEISQATQEE---VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLG 212 (322)
Q Consensus 137 ~sLaaaKrhLsqRId-~vD~klDeq~eis~~i~~e---V~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~G 212 (322)
++|+.||++=..|-- .-.-.||++...-+..++. ...++...+....++..++..+..|+.++..++.++..-..-
T Consensus 61 ~~i~~AKkqRk~~~~~~~~ltl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eD 140 (161)
T TIGR02894 61 EAIELAKKQRKELKREAGSLTLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEED 140 (161)
T ss_pred HHHHHHHHHHhccccCcccCCHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566655443321 0223366666666665543 555555666777778888888888888888887766665555
Q ss_pred HHHHHHHH
Q 020751 213 VKKLCDRA 220 (322)
Q Consensus 213 V~~LC~f~ 220 (322)
-..|...+
T Consensus 141 Y~~L~~Im 148 (161)
T TIGR02894 141 YQTLIDIM 148 (161)
T ss_pred HHHHHHHH
Confidence 55555444
No 196
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=54.92 E-value=1e+02 Score=24.19 Aligned_cols=37 Identities=14% Similarity=0.276 Sum_probs=16.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHH
Q 020751 122 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVN 158 (322)
Q Consensus 122 snAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klD 158 (322)
.++...+...+.++.+....+|.++....+.+-.-|+
T Consensus 20 ~~~~~~l~~~~~~l~~~~~~~~~~I~~~f~~l~~~L~ 56 (127)
T smart00502 20 EDALKQLISIIQEVEENAADVEAQIKAAFDELRNALN 56 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444443
No 197
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=54.81 E-value=26 Score=26.89 Aligned_cols=8 Identities=0% Similarity=0.360 Sum_probs=2.9
Q ss_pred hhhhhhHH
Q 020751 151 TSVDRDVN 158 (322)
Q Consensus 151 d~vD~klD 158 (322)
+.+..++.
T Consensus 3 ~elEn~~~ 10 (55)
T PF05377_consen 3 DELENELP 10 (55)
T ss_pred HHHHHHHH
Confidence 33333333
No 198
>PLN03184 chloroplast Hsp70; Provisional
Probab=54.78 E-value=1.3e+02 Score=32.36 Aligned_cols=22 Identities=9% Similarity=0.205 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHhHhhhhhhHH
Q 020751 137 SSISAAQRQLSSKITSVDRDVN 158 (322)
Q Consensus 137 ~sLaaaKrhLsqRId~vD~klD 158 (322)
.....+|..|..-|..+..+|+
T Consensus 562 ~~~~eakN~lE~~iy~~r~~l~ 583 (673)
T PLN03184 562 RDAVDTKNQADSVVYQTEKQLK 583 (673)
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 3444455556666666666664
No 199
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=54.34 E-value=12 Score=39.71 Aligned_cols=62 Identities=11% Similarity=0.255 Sum_probs=47.3
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHH-------HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhc
Q 020751 115 FATRRSLSDACNSVARQLEDVYSSIS-------AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 176 (322)
Q Consensus 115 fVTKRnMsnAv~svtKqLeqVs~sLa-------aaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~ 176 (322)
=|-+++=.+|++.++++|..+.+-.. ..=.++.+||+++++++|+...=.-.-+.|+-.+-+
T Consensus 363 AAD~kSTQ~aid~it~kvN~iiek~n~~fe~i~~ef~~ve~Ri~~l~~~v~d~~~d~wsynaELlVlle 431 (550)
T PF00509_consen 363 AADLKSTQKAIDQITKKVNSIIEKMNKQFEQIDKEFNEVEKRIDNLEKKVDDKIADVWSYNAELLVLLE 431 (550)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHTTTCEEEECSCSSSTTGHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHhhhccchhhhcccHHHHHHhc
Confidence 36789999999999999998887552 233468899999999999987766666666544433
No 200
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=54.30 E-value=1.2e+02 Score=26.16 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=33.0
Q ss_pred HHHHHHHHHhHHHHHHHHH-----HHHHHHHHhHhhhhhhHHHHHHHHHH
Q 020751 122 SDACNSVARQLEDVYSSIS-----AAQRQLSSKITSVDRDVNKIVEISQA 166 (322)
Q Consensus 122 snAv~svtKqLeqVs~sLa-----aaKrhLsqRId~vD~klDeq~eis~~ 166 (322)
++.+.++-..|-++.-.+. ..+..|.++|+.+...|++..++...
T Consensus 2 e~~l~~~i~~l~el~~~v~d~~~~~s~~~L~~ki~~lv~~L~~l~~~~~~ 51 (128)
T PF09748_consen 2 EQQLEDVIQSLYELGVIVSDFQGPPSQEALNQKINQLVTSLQELDKLAQQ 51 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445555555555555544 56889999999999999999888887
No 201
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=54.22 E-value=21 Score=30.10 Aligned_cols=48 Identities=6% Similarity=0.268 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH
Q 020751 120 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT 167 (322)
Q Consensus 120 nMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i 167 (322)
++.+++..+..-|.++.+.+.+++..+..+++.+.+++++-+++....
T Consensus 66 g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~~~k 113 (133)
T PF06148_consen 66 GMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKELREEK 113 (133)
T ss_dssp --------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999988877765543
No 202
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=54.09 E-value=1.7e+02 Score=34.76 Aligned_cols=49 Identities=8% Similarity=0.068 Sum_probs=22.2
Q ss_pred HhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHH
Q 020751 173 ILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 221 (322)
Q Consensus 173 ~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~f~~ 221 (322)
++++-+..+..|+...++.+...+......|.+-.-++.-+..|=.-++
T Consensus 1581 ~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e 1629 (1758)
T KOG0994|consen 1581 EAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRME 1629 (1758)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444444444433333
No 203
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=53.97 E-value=2e+02 Score=27.33 Aligned_cols=35 Identities=11% Similarity=0.272 Sum_probs=14.2
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 020751 143 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 177 (322)
Q Consensus 143 KrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~d 177 (322)
|+.....|..+...++.+..++++.+.|-...+..
T Consensus 48 r~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~ 82 (230)
T PF10146_consen 48 RMAHVEELRQINQDINTLENIIKQAESERNKRQEK 82 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333444444444444444444333333
No 204
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=53.96 E-value=1.3e+02 Score=27.03 Aligned_cols=73 Identities=14% Similarity=0.214 Sum_probs=33.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHH
Q 020751 126 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 198 (322)
Q Consensus 126 ~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 198 (322)
+.+.+.|+.+.+.+..=+.+...=|..|.+=-+++..=....+..+.++..-+..-+.+|..++.-+..+.++
T Consensus 106 ~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~ 178 (184)
T PF05791_consen 106 EDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGENGDIPQLQKQIENLNEE 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444444455555555555555555555555444444433
No 205
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=53.93 E-value=79 Score=27.66 Aligned_cols=20 Identities=25% Similarity=0.503 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 020751 184 EFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 184 Dv~~v~~~V~~Le~Ki~~iE 203 (322)
.+.++..-+..|+.||..+.
T Consensus 117 ~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 117 EIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444443
No 206
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=53.79 E-value=1.2e+02 Score=25.01 Aligned_cols=67 Identities=15% Similarity=0.215 Sum_probs=44.4
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 020751 150 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 216 (322)
Q Consensus 150 Id~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~L 216 (322)
++.|..|+.+..+.+...+-||.+++++=.....+++.++.--..|+.+-..+..-|+.=..-+..|
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777777777777777777777666666666666666666666666665555555555444
No 207
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=53.78 E-value=66 Score=32.71 Aligned_cols=65 Identities=14% Similarity=0.292 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020751 139 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 207 (322)
Q Consensus 139 LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd 207 (322)
+-..+|.|..+|+++..+ .++++++|+... .-+++.+.+..++..+++-+..||.++..++.+-+
T Consensus 33 ld~~~r~l~~~~~~lr~~---rn~~sk~i~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 97 (425)
T PRK05431 33 LDEERRELQTELEELQAE---RNALSKEIGQAK-RKGEDAEALIAEVKELKEEIKALEAELDELEAELE 97 (425)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHh-hcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677787777777654 556666665521 11224445555556666555566666666555433
No 208
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=53.64 E-value=1.8e+02 Score=32.32 Aligned_cols=100 Identities=11% Similarity=0.084 Sum_probs=85.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHH
Q 020751 119 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 198 (322)
Q Consensus 119 RnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 198 (322)
..+.++|..+.++++-+-....+..+...++.....+++-+...+...-..-..++...+-....++..+|--+..++..
T Consensus 115 ~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke 194 (716)
T KOG4593|consen 115 EALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKE 194 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999999999999999999889999998888999999999988888888
Q ss_pred HHHhhhhhhHHhHHHHHHHH
Q 020751 199 LIEIEGKQDITTLGVKKLCD 218 (322)
Q Consensus 199 i~~iE~kQd~Tn~GV~~LC~ 218 (322)
+++....=+-.+.-+..+-+
T Consensus 195 ~~~~~~ql~~~~q~~~~~~~ 214 (716)
T KOG4593|consen 195 LDRQHKQLQEENQKIQELQA 214 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88776655555554444433
No 209
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=53.01 E-value=1.4e+02 Score=31.89 Aligned_cols=97 Identities=16% Similarity=0.254 Sum_probs=63.3
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHH----------HH------HHHHHhhcchhhh
Q 020751 118 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQA----------TQ------EEVTILRGRSKLI 181 (322)
Q Consensus 118 KRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~----------i~------~eV~~v~~dls~i 181 (322)
+|-.-.-+..+-+-|+.+++.+.. ......+|.++|+.+|...+-.+. .+ .+.-+.-.|+|+|
T Consensus 337 ~rEvl~~~d~ie~ml~~~~~~~~~-~~~~~~~i~~~e~~vd~~~~~Ik~YL~~ls~~~Lse~es~r~~~iid~a~~lE~I 415 (533)
T COG1283 337 AREVLRLGDSIEQMLERLYEYIEG-DAKKVKEIRKLEDAVDRLYEEIKLYLARLSKEGLSEEESRRWAEIIDAAINLEHI 415 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHhHHHH
Confidence 444445566677778888888887 777788888888888876654332 11 1244566677777
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHH
Q 020751 182 GDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 221 (322)
Q Consensus 182 g~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~f~~ 221 (322)
|+-++++ +.-.+. .++.+-.++-.|..-||++..
T Consensus 416 gDiie~l---~~~~~k---k~~~~~~fse~~~~el~~l~~ 449 (533)
T COG1283 416 GDIIERL---LELADK---KIANGRAFSEDGLEELDALFA 449 (533)
T ss_pred HHHHHHH---HHHHHH---HHhcCCCCCHHHHHHHHHHHH
Confidence 7766663 333333 345677778888888887654
No 210
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=53.01 E-value=1.1e+02 Score=24.56 Aligned_cols=54 Identities=4% Similarity=0.129 Sum_probs=31.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhh
Q 020751 128 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 181 (322)
Q Consensus 128 vtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~i 181 (322)
+...|+.-.+.|...-....+|++.+.....+-.++.+.|+.++.-+...+..+
T Consensus 23 ~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~l 76 (88)
T PF10241_consen 23 TLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSL 76 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555566666666666666666666666665555544333
No 211
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=52.92 E-value=67 Score=31.10 Aligned_cols=17 Identities=24% Similarity=0.318 Sum_probs=10.6
Q ss_pred CCCCCCCCCccchhhcc
Q 020751 270 XXXXXXXIPMDLIRLTG 286 (322)
Q Consensus 270 ~~~~~~~~~~~~~~~~~ 286 (322)
+..+....||-.|+|-|
T Consensus 100 ~~~~~~~rpD~vI~LP~ 116 (304)
T PF02646_consen 100 DEDGNGLRPDFVIHLPG 116 (304)
T ss_pred cCCCCCcCceEEEEcCC
Confidence 33455677777777743
No 212
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=52.89 E-value=86 Score=32.66 Aligned_cols=108 Identities=14% Similarity=0.243 Sum_probs=64.6
Q ss_pred cCchhhhhhhhHHH----HHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHH
Q 020751 110 LPDMMFATRRSLSD----ACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 185 (322)
Q Consensus 110 fSDlMfVTKRnMsn----Av~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv 185 (322)
.-|......+.|.. ....+...|++++..|..+...|....+.++-.=++..+ +++....++.-....|.++
T Consensus 249 ~~~~l~~~~~~l~~~~d~~~~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~e----le~RL~~l~~LkrKyg~s~ 324 (563)
T TIGR00634 249 LLEGLGEAQLALASVIDGSLRELAEQVGNALTEVEEATRELQNYLDELEFDPERLNE----IEERLAQIKRLKRKYGASV 324 (563)
T ss_pred HHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHH----HHHHHHHHHHHHHHhCCCH
Confidence 44566666666644 667788888899999999999998888877643222222 3334444444444455556
Q ss_pred HHHHHHHHHHHHHHHHhh----------hhhhHHhHHHHHHHHHHH
Q 020751 186 QSVRDIVQTLESKLIEIE----------GKQDITTLGVKKLCDRAR 221 (322)
Q Consensus 186 ~~v~~~V~~Le~Ki~~iE----------~kQd~Tn~GV~~LC~f~~ 221 (322)
+.+......++.+++.++ .+.+-...-+..+|+-+.
T Consensus 325 e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls 370 (563)
T TIGR00634 325 EEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALS 370 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555555555544 344444555555554443
No 213
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=52.67 E-value=1e+02 Score=30.11 Aligned_cols=70 Identities=20% Similarity=0.185 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHh---HhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020751 136 YSSISAAQRQLSSK---ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 205 (322)
Q Consensus 136 s~sLaaaKrhLsqR---Id~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~k 205 (322)
+..|+..-||+.+. |..-|..|=+.-|.+-..-+||.+++.|-.+|.++++.|-.--..||.-|+.+|.+
T Consensus 84 s~el~~Qe~vF~~q~~qvNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k 156 (254)
T KOG2196|consen 84 SLELEEQERVFLQQATQVNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETK 156 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567778887765 55668889999999999999999999999999999999988888888888877765
No 214
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=52.58 E-value=80 Score=28.46 Aligned_cols=27 Identities=15% Similarity=0.234 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 020751 135 VYSSISAAQRQLSSKITSVDRDVNKIV 161 (322)
Q Consensus 135 Vs~sLaaaKrhLsqRId~vD~klDeq~ 161 (322)
+-+.|-.+-++|+.-|+.|....+-+.
T Consensus 3 ~~~~L~~~d~~L~~~L~~l~~hq~~~~ 29 (188)
T PF10018_consen 3 LAEDLIEADDELSSALEELQEHQENQA 29 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666777776666655444333
No 215
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=52.56 E-value=4.6 Score=34.69 Aligned_cols=36 Identities=11% Similarity=0.089 Sum_probs=0.0
Q ss_pred HhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhH
Q 020751 173 ILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 208 (322)
Q Consensus 173 ~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~ 208 (322)
.+...+...+.-+..+...+..|..|+..++..++.
T Consensus 49 ~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~ 84 (138)
T PF06009_consen 49 DANKALDDANNSVKNLEQLAPDLLDKLKPLENLSEN 84 (138)
T ss_dssp ------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 333333444444555555556666666666666555
No 216
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=52.46 E-value=1.4e+02 Score=34.21 Aligned_cols=101 Identities=16% Similarity=0.187 Sum_probs=75.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHH
Q 020751 120 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 199 (322)
Q Consensus 120 nMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki 199 (322)
.+.---+.+++-|-|.-+-+...+++|.--=+.....+.+..+..+-...++.+.......|+.++..-+.-+++++.|+
T Consensus 274 qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmkltrqkadirc~LlEarrk~egfddk~ 353 (1265)
T KOG0976|consen 274 QLKAKNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMKLTRQKADIRCALLEARRKAEGFDDKL 353 (1265)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 33333455677777777777777776665555555556666666777777888888888889999999999999999999
Q ss_pred HHhhhhhhHHhHHHHHHHHHH
Q 020751 200 IEIEGKQDITTLGVKKLCDRA 220 (322)
Q Consensus 200 ~~iE~kQd~Tn~GV~~LC~f~ 220 (322)
.++|.+-|.+.+-|..|-+--
T Consensus 354 ~eLEKkrd~al~dvr~i~e~k 374 (1265)
T KOG0976|consen 354 NELEKKRDMALMDVRSIQEKK 374 (1265)
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 999999999888888776543
No 217
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.36 E-value=1.7e+02 Score=29.99 Aligned_cols=69 Identities=4% Similarity=0.080 Sum_probs=47.8
Q ss_pred CchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhh
Q 020751 111 PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 180 (322)
Q Consensus 111 SDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ 180 (322)
-+||++-+.-|.+.-+-. ..|..-+|.|+.-++||-.-+++|+..+-..++-+.-.++.|.|+.+|.++
T Consensus 217 eklR~r~eeeme~~~aeq-~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~~~n 285 (365)
T KOG2391|consen 217 EKLRRRREEEMERLQAEQ-ESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEKAEN 285 (365)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Confidence 356666666666655443 346677777777777777777777777777777777777777777777665
No 218
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=52.25 E-value=89 Score=23.08 Aligned_cols=43 Identities=21% Similarity=0.299 Sum_probs=19.9
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHH
Q 020751 150 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIV 192 (322)
Q Consensus 150 Id~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V 192 (322)
|++-..-+++..++..+|.+++..=++.|..+...+..+...+
T Consensus 10 L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l 52 (66)
T PF12352_consen 10 LQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNL 52 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333444555555555555555444444444444444444333
No 219
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=52.19 E-value=71 Score=25.31 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHH
Q 020751 132 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 201 (322)
Q Consensus 132 LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ 201 (322)
|+.=...+-.|=..|..+|+.+-.+-++.. ++-.+++....+...|-..++..+.+|=+||+.
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~-------~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELK-------EENEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 333333333344444444444444333333 333333334455555666666666666666654
No 220
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=52.14 E-value=2.7e+02 Score=28.22 Aligned_cols=23 Identities=4% Similarity=0.286 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHH
Q 020751 119 RSLSDACNSVARQLEDVYSSISA 141 (322)
Q Consensus 119 RnMsnAv~svtKqLeqVs~sLaa 141 (322)
..|++-.+++++|-|+=..++.-
T Consensus 206 ~ema~lL~sLt~HfDqC~~a~~~ 228 (412)
T PF04108_consen 206 QEMASLLESLTNHFDQCVTAVRH 228 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888877777663
No 221
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=51.98 E-value=2e+02 Score=26.57 Aligned_cols=61 Identities=10% Similarity=0.199 Sum_probs=34.6
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751 142 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 202 (322)
Q Consensus 142 aKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 202 (322)
=++++...|..++.|+-+.++-...++.+..+.-..+++...+++.+++-+...|-+-.++
T Consensus 125 ~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e~~F~~~ 185 (190)
T PF05266_consen 125 ELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIENAELEFQSV 185 (190)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666665555555555555555555555666665555555554443
No 222
>PF06320 GCN5L1: GCN5-like protein 1 (GCN5L1); InterPro: IPR009395 This family consists of several eukaryotic GCN5-like protein 1 (GCN5L1) sequences. The function of this family is unknown [,].
Probab=51.97 E-value=1.5e+02 Score=25.47 Aligned_cols=59 Identities=14% Similarity=0.219 Sum_probs=37.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 020751 151 TSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 209 (322)
Q Consensus 151 d~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~T 209 (322)
+.|.....+.-+-++.|..|.-.++..+..+...-...-.++..+..+|.+|..=|+.+
T Consensus 36 d~ln~~v~~~~~Nqk~ie~e~k~L~~~~~~l~kqt~qw~~~~~~~~~~LKEiGDveNWa 94 (121)
T PF06320_consen 36 DHLNSRVSEAYENQKKIEKEAKQLQRNTAKLAKQTDQWLKLVDSFNDALKEIGDVENWA 94 (121)
T ss_pred HHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHH
Confidence 33444445555666666666666777777777777777777777777777665555543
No 223
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=51.90 E-value=83 Score=30.47 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHH
Q 020751 120 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS 164 (322)
Q Consensus 120 nMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis 164 (322)
.|..-..-+..+|+.+...|....+..++....|...+....+..
T Consensus 3 ~l~~l~~pl~e~l~~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~ 47 (304)
T PF02646_consen 3 QLEQLLKPLKEQLEKFEKRLEESFEQRSEEFGSLKEQLKQLSEAN 47 (304)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344455555555555555555555555555555555554444433
No 224
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=51.87 E-value=1.3e+02 Score=28.26 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=23.1
Q ss_pred HhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 020751 173 ILRGRSKLIGDEFQSVRDIVQTLESKLI 200 (322)
Q Consensus 173 ~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 200 (322)
....++..|.+||+.|.+=|.+||.=|.
T Consensus 157 ~~~~~l~~v~~Dl~~ie~QV~~Le~~L~ 184 (195)
T PF12761_consen 157 KSGKNLKSVREDLDTIEEQVDGLESHLS 184 (195)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457888899999999999999998664
No 225
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=51.61 E-value=1.7e+02 Score=31.87 Aligned_cols=117 Identities=10% Similarity=0.152 Sum_probs=70.5
Q ss_pred eEEeccCCcC---chhhhhhhhHHH----HHHHHHHhH---HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 020751 102 YVWWKGWKLP---DMMFATRRSLSD----ACNSVARQL---EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 171 (322)
Q Consensus 102 YmwWKGwsfS---DlMfVTKRnMsn----Av~svtKqL---eqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV 171 (322)
|-|--|-..+ |+|+---..|+. +-..+++-. +...+.+...-.||-|.+|.-|.+++++..+...++.++
T Consensus 372 ~~~~~~E~~~~de~~~~~~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~ 451 (607)
T KOG0240|consen 372 KRWRNGEEVKEDEDFSLKEEAKMSAILSEEEMSITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQL 451 (607)
T ss_pred hhhcccCcccchhhhhHHHHHHhhhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4443344433 566555555553 333444444 578888999999999999999999999999998888887
Q ss_pred HHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 020751 172 TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 218 (322)
Q Consensus 172 ~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~ 218 (322)
..=.+-++.-..+.+.++.-.+.+-.-....+..+.-......-||.
T Consensus 452 ~~qee~~s~~~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~ 498 (607)
T KOG0240|consen 452 LDQEELLSSTRRLYEDIQQELSEIQEENEAAKDEVKEVLTALEELAV 498 (607)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555544444444444443333333233333334444445555654
No 226
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=51.42 E-value=85 Score=36.65 Aligned_cols=80 Identities=15% Similarity=0.238 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHH-HHHHHHHHHHHhhhhhhHHhHHHHHH
Q 020751 138 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD-IVQTLESKLIEIEGKQDITTLGVKKL 216 (322)
Q Consensus 138 sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~-~V~~Le~Ki~~iE~kQd~Tn~GV~~L 216 (322)
.|...-+++..+...+++.+.++.+....++++...++.++++|...+..++. .+. ++.|+..+..+=+.-..-+.+.
T Consensus 960 ~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId-~~~K~e~~~~~l~e~~~~~~~~ 1038 (1293)
T KOG0996|consen 960 DLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERID-IENKLEAINGELNEIESKIKQP 1038 (1293)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHHhhhhhH
Confidence 44445556677777788888888888999999999999998888888888887 555 8888888777777666666665
Q ss_pred HH
Q 020751 217 CD 218 (322)
Q Consensus 217 C~ 218 (322)
-.
T Consensus 1039 ~k 1040 (1293)
T KOG0996|consen 1039 EK 1040 (1293)
T ss_pred HH
Confidence 43
No 227
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=51.35 E-value=2e+02 Score=26.48 Aligned_cols=69 Identities=7% Similarity=0.148 Sum_probs=53.1
Q ss_pred eccCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhH
Q 020751 105 WKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 184 (322)
Q Consensus 105 WKGwsfSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~D 184 (322)
+.+|+.+. ..|.+|...+|..+|..+.++..+-.. .++.-+-|.|....+..++.=+. +.++.+...|
T Consensus 58 f~~ls~~E------~~l~~~le~~g~~~d~~~~~~~~~~~~----~~~f~e~LkEy~~ya~slk~vlk--~r~~~q~~~e 125 (201)
T cd07622 58 FSEWSAIE------KEMGDGLQKAGHYMDSYAASIDNGLED----EELIADQLKEYLFFADSLRAVCK--KHELLQYDLE 125 (201)
T ss_pred HHHHHhcc------hhHHHHHHHHHHHHHHHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 46788888 699999999999999988888875544 46778888888888888887443 6666666655
Q ss_pred H
Q 020751 185 F 185 (322)
Q Consensus 185 v 185 (322)
.
T Consensus 126 ~ 126 (201)
T cd07622 126 K 126 (201)
T ss_pred H
Confidence 4
No 228
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.35 E-value=1.7e+02 Score=25.61 Aligned_cols=68 Identities=13% Similarity=0.205 Sum_probs=51.4
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHH
Q 020751 147 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 214 (322)
Q Consensus 147 sqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~ 214 (322)
..|++++..++|+..+|-..==+.|-|=.+.|+.+.+--++++..-...+.+=..+.-|.=.-|.-.+
T Consensus 28 ~~k~~~tq~QvdeVv~IMr~NV~KVlER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~ 95 (116)
T KOG0860|consen 28 NDKLQQTQAQVDEVVDIMRENVEKVLERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMR 95 (116)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888777777788888888888888888888888877766666655444444333
No 229
>PRK11032 hypothetical protein; Provisional
Probab=51.31 E-value=73 Score=28.91 Aligned_cols=51 Identities=14% Similarity=0.343 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH----hhcchhhhhhHH
Q 020751 132 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI----LRGRSKLIGDEF 185 (322)
Q Consensus 132 LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~----v~~dls~ig~Dv 185 (322)
|++|.+.|...+..|..=|+...+.+. +..+.+++|+.. +++||+++...+
T Consensus 12 l~~v~~~l~~~~~~l~~~ve~a~~~~~---~~~elT~dEl~lv~~ylkRDL~ef~~~~ 66 (160)
T PRK11032 12 VASLTERLRNGERDIDALVESARKRVD---AAGELTRDEVDLITRAVRRDLEEFARSY 66 (160)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHH---HHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666555544444444444 444456666543 567777776643
No 230
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=51.25 E-value=2.1e+02 Score=30.04 Aligned_cols=80 Identities=20% Similarity=0.366 Sum_probs=51.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHH--HHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHH
Q 020751 122 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI--VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 199 (322)
Q Consensus 122 snAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq--~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki 199 (322)
++.++.+.++-.++...+..+ ++|..|.+.+.+.+++. .++...++.++.+.-.++..+..+++....++..|+ +|
T Consensus 28 ~eV~~~I~~~y~df~~~~~~~-~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L~~eL~~~~~~l~~L~-~L 105 (593)
T PF06248_consen 28 EEVHSMINKKYSDFSPSLQSA-KDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQELKRELEENEQLLEVLE-QL 105 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 344444455555555554444 35667777777777443 236677788888888888888888888777766665 44
Q ss_pred HHhh
Q 020751 200 IEIE 203 (322)
Q Consensus 200 ~~iE 203 (322)
.+++
T Consensus 106 ~~i~ 109 (593)
T PF06248_consen 106 QEID 109 (593)
T ss_pred HHHH
Confidence 4433
No 231
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=51.22 E-value=57 Score=29.48 Aligned_cols=48 Identities=25% Similarity=0.394 Sum_probs=27.0
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHH
Q 020751 149 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 196 (322)
Q Consensus 149 RId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le 196 (322)
=|+.+...-++.-+|.+..++|...++..|+.+..++..+-.-|..||
T Consensus 7 ti~~ie~sK~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le 54 (159)
T PF05384_consen 7 TIDTIESSKEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLE 54 (159)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555666666666655555555555555555555555554
No 232
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=51.03 E-value=37 Score=33.92 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHhhhh
Q 020751 188 VRDIVQTLESKLIEIEGK 205 (322)
Q Consensus 188 v~~~V~~Le~Ki~~iE~k 205 (322)
....+..|+.||+.+|..
T Consensus 170 ~~k~i~~l~~kl~DlEnr 187 (370)
T PF02994_consen 170 LEKRIKKLEDKLDDLENR 187 (370)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 333344444555555543
No 233
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=50.90 E-value=1.7e+02 Score=30.10 Aligned_cols=84 Identities=8% Similarity=0.147 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH---HHHHHhHhhhhh------------------hHHHHHHHHHHHHHHHHHhhcchh
Q 020751 121 LSDACNSVARQLEDVYSSISAAQ---RQLSSKITSVDR------------------DVNKIVEISQATQEEVTILRGRSK 179 (322)
Q Consensus 121 MsnAv~svtKqLeqVs~sLaaaK---rhLsqRId~vD~------------------klDeq~eis~~i~~eV~~v~~dls 179 (322)
-+.++..+-++|+++.+.+++++ ..+.+++.-++. .+.+..++...+.++..+++....
T Consensus 69 ~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (525)
T TIGR02231 69 DPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDR 148 (525)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666555444332 233344433322 234445555555555555555555
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhh
Q 020751 180 LIGDEFQSVRDIVQTLESKLIEIEG 204 (322)
Q Consensus 180 ~ig~Dv~~v~~~V~~Le~Ki~~iE~ 204 (322)
....+++.+++-+..|+.+|..+..
T Consensus 149 ~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 149 EAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5555555555555555555555543
No 234
>PLN02867 Probable galacturonosyltransferase
Probab=50.88 E-value=67 Score=34.33 Aligned_cols=41 Identities=17% Similarity=0.106 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020751 160 IVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 160 q~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
..+--+++-.|++..+-|...+ +..++.|++.+|.++....
T Consensus 118 ~~~~~~~~~~~~~~~~~d~~~~---~~kl~am~~~~e~~~~~~~ 158 (535)
T PLN02867 118 STESFNDLVKEMTSNRQDIKAF---AFRTKAMLLKMERKVQSAR 158 (535)
T ss_pred hhhHHHHHHHHHHhccchHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3333334444444455554444 5667788888888876543
No 235
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=50.78 E-value=83 Score=36.74 Aligned_cols=81 Identities=17% Similarity=0.205 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHH
Q 020751 133 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLG 212 (322)
Q Consensus 133 eqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~G 212 (322)
+.-...+..+-+|+++.|..+.+++++-..-...+.+.....+..+.+...+++.+...-..++.+++.+..+=+....|
T Consensus 397 e~~~vk~~E~lK~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~ 476 (1293)
T KOG0996|consen 397 EREDVKREEKLKRLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEG 476 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 33344555666777777777777777766666666666777777777777777777777777777777666555555555
Q ss_pred H
Q 020751 213 V 213 (322)
Q Consensus 213 V 213 (322)
+
T Consensus 477 ~ 477 (1293)
T KOG0996|consen 477 I 477 (1293)
T ss_pred h
Confidence 4
No 236
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=50.71 E-value=1.1e+02 Score=32.32 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=22.5
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 020751 130 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE 170 (322)
Q Consensus 130 KqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~e 170 (322)
++|++-++-+.++|+-+.+|++.++.|++++..--+..+++
T Consensus 364 ~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~ 404 (493)
T KOG0804|consen 364 DSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREE 404 (493)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666666665554444444433
No 237
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=50.51 E-value=34 Score=31.33 Aligned_cols=32 Identities=16% Similarity=0.196 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhhhhhHHHH
Q 020751 156 DVNKIVEISQATQEEVTILRGRSKLIGDEFQS 187 (322)
Q Consensus 156 klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~ 187 (322)
+|.++.+--.+|.+.|.+..++|+.|++++..
T Consensus 129 ~L~d~Iv~~~~i~e~IKd~de~L~~I~d~iK~ 160 (163)
T PF03233_consen 129 KLKDNIVTEKLIEELIKDFDERLKEIRDKIKK 160 (163)
T ss_pred hHhhhccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444445555555555555555555544443
No 238
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=50.32 E-value=1.1e+02 Score=27.43 Aligned_cols=74 Identities=12% Similarity=0.140 Sum_probs=53.4
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHH-HHHHHHHhhhhhhHHhHHHHHHHH
Q 020751 145 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT-LESKLIEIEGKQDITTLGVKKLCD 218 (322)
Q Consensus 145 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~-Le~Ki~~iE~kQd~Tn~GV~~LC~ 218 (322)
++...|+.++.+|.....+...+-+.-.++..|+..+|.-+..+-..-.+ |+..+..+...-+....+...|-+
T Consensus 8 ei~e~~~~L~~~L~~l~ki~~Rl~kr~~~l~~d~~efg~~~~~L~~~E~~~L~~~l~~~~~~~~~~s~~~~~l~~ 82 (185)
T cd07628 8 EIREKSDKLDENLTKIDKIFAKVVKRQSDLSVDYADLATQFQKLGSLESGEITEPFKIFSESLSQFSTSLRVLNK 82 (185)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888887777888888888888888888888888777777777 777777776555555555555544
No 239
>KOG4515 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.17 E-value=2.4e+02 Score=26.96 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 020751 119 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 171 (322)
Q Consensus 119 RnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV 171 (322)
+-+=+-|+-+-.||.+--+++++-..||-.|+..|+.++.-.-|-....++.-
T Consensus 91 q~~~~lctR~Q~Hl~~cA~aVA~dQn~lv~r~K~v~~s~~tLf~~~~~~qk~y 143 (217)
T KOG4515|consen 91 QPFFRLCTRLQEHLAVCAKAVAADQNKLVARCKSVEASMITLFEETRAHQKQY 143 (217)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34557899999999999999999999999999999999987766666666553
No 240
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=50.10 E-value=2e+02 Score=26.21 Aligned_cols=38 Identities=11% Similarity=0.377 Sum_probs=24.7
Q ss_pred CCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020751 108 WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSS 148 (322)
Q Consensus 108 wsfSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsq 148 (322)
|+|+.-... .+.+.++.+.+.++++...++..+..|..
T Consensus 57 WsFps~~~~---~~~~~~~~l~~~~~~~~~~i~~l~~~i~~ 94 (188)
T PF03962_consen 57 WSFPSQAKQ---KRQNKLEKLQKEIEELEKKIEELEEKIEE 94 (188)
T ss_pred EecChHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678866554 44566777777777777766666665544
No 241
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=50.06 E-value=96 Score=22.43 Aligned_cols=9 Identities=56% Similarity=0.637 Sum_probs=3.3
Q ss_pred HHHHhHhhh
Q 020751 145 QLSSKITSV 153 (322)
Q Consensus 145 hLsqRId~v 153 (322)
.|...++.+
T Consensus 29 ~l~~~~~~l 37 (86)
T PF06013_consen 29 QLESSIDSL 37 (86)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 242
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=49.93 E-value=87 Score=27.24 Aligned_cols=55 Identities=13% Similarity=0.233 Sum_probs=35.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHhhhh-------hhHHHHHHHHHHHHHHHHHhhcchhh
Q 020751 126 NSVARQLEDVYSSISAAQRQLSSKITSVD-------RDVNKIVEISQATQEEVTILRGRSKL 180 (322)
Q Consensus 126 ~svtKqLeqVs~sLaaaKrhLsqRId~vD-------~klDeq~eis~~i~~eV~~v~~dls~ 180 (322)
+.+..|++.+...+...|+++.+=-|+.| .++||..+-...+...+..++.|++.
T Consensus 4 a~~~~q~~~l~~~v~~lRed~r~SEdrsa~SRa~mhrRlDElV~Rv~~lEs~~~~lk~dVse 65 (112)
T PF07439_consen 4 AGLHQQLGTLNAEVKELREDIRRSEDRSAASRASMHRRLDELVERVTTLESSVSTLKADVSE 65 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 45778888888888888888876655544 35566555555555555555554443
No 243
>PF04778 LMP: LMP repeated region; InterPro: IPR006864 This repeated sequence element is found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. The the number of repeats in the protein affects the tendency of cells to spontaneously aggregate. Agglutination may be an important factor in colonization. Non-agglutinating microorganisms might easily be distributed whereas aggregation might provide a better chance to avoid an antibody response since some of the epitopes may be buried [].
Probab=49.92 E-value=1.2e+02 Score=27.69 Aligned_cols=82 Identities=11% Similarity=0.261 Sum_probs=57.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhhhhhH-----HHHHHHHHHHHHHHHHhhcchhhhhhH----HHHHHHHHHHHHHH
Q 020751 128 VARQLEDVYSSISAAQRQLSSKITSVDRDV-----NKIVEISQATQEEVTILRGRSKLIGDE----FQSVRDIVQTLESK 198 (322)
Q Consensus 128 vtKqLeqVs~sLaaaKrhLsqRId~vD~kl-----Deq~eis~~i~~eV~~v~~dls~ig~D----v~~v~~~V~~Le~K 198 (322)
+-++|..--..|..||.+|.+.|+.-..-+ +.+.-.-......|+++...|+.|..| +..+++.....+.=
T Consensus 5 l~~kL~D~D~~IqqaK~~L~~ei~kA~q~~~snnt~~mqsa~~sL~~Ki~ei~~kL~~Fn~dKea~F~eLq~tr~~I~eF 84 (157)
T PF04778_consen 5 LDKKLTDNDNEIQQAKTELDKEIQKANQAVASNNTASMQSAKSSLDAKITEITKKLEKFNKDKEAKFNELQQTRKQIDEF 84 (157)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 344555555678888888888888766554 445555566777888888888888765 55677777777777
Q ss_pred HHHhhhhhhHH
Q 020751 199 LIEIEGKQDIT 209 (322)
Q Consensus 199 i~~iE~kQd~T 209 (322)
|.....+++|+
T Consensus 85 i~~~K~NpnY~ 95 (157)
T PF04778_consen 85 INKNKNNPNYA 95 (157)
T ss_pred HhhccCCccHH
Confidence 77777777777
No 244
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=49.81 E-value=90 Score=31.17 Aligned_cols=51 Identities=22% Similarity=0.527 Sum_probs=27.3
Q ss_pred hHHHHHHHhhhheeeEE-----eccCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 020751 88 KYGVIVVIVAVGYGYVW-----WKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAA 142 (322)
Q Consensus 88 ~y~l~a~iGavGYgYmw-----WKGwsfSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaa 142 (322)
.+|++.++.-+|||-+- |+.-.- |-..+.+++.......++++.-+.+...
T Consensus 167 ~~Gl~l~i~~~g~Glv~iP~~l~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 222 (471)
T PF04791_consen 167 FWGLFLFIILLGYGLVAIPRDLWRSSNS----YFRAAKLEDEAAEAKEKLDDIIEKLRRL 222 (471)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHhccc----cchhhhhcchhHHHHHHHHHHHHHHHHH
Confidence 45665566678888642 654322 4444445555555555555554444444
No 245
>PF15450 DUF4631: Domain of unknown function (DUF4631)
Probab=49.67 E-value=1.7e+02 Score=31.41 Aligned_cols=44 Identities=16% Similarity=0.187 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH
Q 020751 119 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 162 (322)
Q Consensus 119 RnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~e 162 (322)
.+..++...+..-|+.--..+...=+.|..+|.+|.+++|-+.+
T Consensus 336 ~~~ld~LqEksqile~sv~~l~~~lkDLd~~~~aLs~rld~qEq 379 (531)
T PF15450_consen 336 QSELDLLQEKSQILEDSVAELMRQLKDLDDHILALSWRLDLQEQ 379 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 56677777777777766666667778899999999998887654
No 246
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=49.59 E-value=56 Score=25.18 Aligned_cols=22 Identities=5% Similarity=0.149 Sum_probs=9.1
Q ss_pred HHHHHHHhhcchhhhhhHHHHH
Q 020751 167 TQEEVTILRGRSKLIGDEFQSV 188 (322)
Q Consensus 167 i~~eV~~v~~dls~ig~Dv~~v 188 (322)
+++++..+..++.++..+++.+
T Consensus 4 i~e~l~~ie~~l~~~~~~i~~l 25 (71)
T PF10779_consen 4 IKEKLNRIETKLDNHEERIDKL 25 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444443333333
No 247
>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences. SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.
Probab=49.57 E-value=45 Score=30.91 Aligned_cols=62 Identities=16% Similarity=0.267 Sum_probs=22.7
Q ss_pred HHHHHHHhhhheeeEEeccCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHh
Q 020751 89 YGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKIT 151 (322)
Q Consensus 89 y~l~a~iGavGYgYmwWKGwsfSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId 151 (322)
|+-.+++++|++-|+| .=++-..=.+-.++...++...=...+..-.+++.+|++.+....+
T Consensus 36 yGWyil~~~I~ly~l~-qkl~~~~r~~r~~~~~~~~~~~dpd~v~~rqEa~eaAR~RmQEE~d 97 (190)
T PF06936_consen 36 YGWYILFGCILLYLLW-QKLSPSFRSLRERRQLDAAAKKDPDVVVRRQEAMEAARRRMQEELD 97 (190)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555554444 4343322222234444444433344556678888888888765443
No 248
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=49.38 E-value=49 Score=29.45 Aligned_cols=58 Identities=5% Similarity=0.083 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHH
Q 020751 138 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 197 (322)
Q Consensus 138 sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 197 (322)
-+..++++-..+++.||.+|.+-+ ...++++|-....++.++-..+..+...+...+.
T Consensus 4 w~~~~~~~~~~~~~~Le~elk~~~--~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~ 61 (177)
T PF10602_consen 4 WIEETKAKNAEELEKLEAELKDAK--SNLGKESIRMALEDLADHYCKIGDLEEALKAYSR 61 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 467888889999999999998866 6778888888888888888877777777666554
No 249
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=49.32 E-value=37 Score=28.01 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=14.2
Q ss_pred hhhhhhhHHHHHHHHHHhHHHH
Q 020751 114 MFATRRSLSDACNSVARQLEDV 135 (322)
Q Consensus 114 MfVTKRnMsnAv~svtKqLeqV 135 (322)
|||- +...+|...+.+.++..
T Consensus 59 vlv~-~~~~e~~~~l~~r~e~i 79 (110)
T TIGR02338 59 LLVK-TDKEEAIQELKEKKETL 79 (110)
T ss_pred hhhe-ecHHHHHHHHHHHHHHH
Confidence 6765 66777777777666655
No 250
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=49.23 E-value=65 Score=30.16 Aligned_cols=56 Identities=16% Similarity=0.283 Sum_probs=45.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhh---hhhHHHHHHHHHHHHHHHHHhhcchhhhhh
Q 020751 128 VARQLEDVYSSISAAQRQLSSKITSV---DRDVNKIVEISQATQEEVTILRGRSKLIGD 183 (322)
Q Consensus 128 vtKqLeqVs~sLaaaKrhLsqRId~v---D~klDeq~eis~~i~~eV~~v~~dls~ig~ 183 (322)
+.-.++|+..++..+|+=|..-|+.+ |+|||.+..++..+.-++.-++-....++.
T Consensus 127 ~~D~~d~l~~el~e~K~~l~k~ie~~l~R~ekl~~lv~~ss~L~~~s~~~~k~akk~n~ 185 (190)
T COG5143 127 IQDKLDQLQQELEETKRVLNKNIEKVLYRDEKLDLLVDLSSILLLSSKMFPKSAKKSNL 185 (190)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44458889999999999999998887 889999999999999988777766555544
No 251
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=49.11 E-value=1.1e+02 Score=31.82 Aligned_cols=44 Identities=11% Similarity=0.327 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHH---HhHhhhhhhHHHHHH
Q 020751 119 RSLSDACNSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVE 162 (322)
Q Consensus 119 RnMsnAv~svtKqLeqVs~sLaaaKrhLs---qRId~vD~klDeq~e 162 (322)
..+.+.+.++--+|+.+...|..-...+. .|++.+..++.....
T Consensus 269 ~~~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~ 315 (563)
T TIGR00634 269 RELAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKR 315 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 56666677777777777777766554443 344444444444444
No 252
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=48.97 E-value=2.1e+02 Score=28.18 Aligned_cols=80 Identities=8% Similarity=0.135 Sum_probs=47.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhH
Q 020751 129 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 208 (322)
Q Consensus 129 tKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~ 208 (322)
+.+++..-..+...-+++.++-+.+++-+++.......+.+-+.+.|..+-..-.++..+..+...-...+.++-.....
T Consensus 217 ~~~l~~~~~~l~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~ll~~~r~~l~~~l~~l~~~~~~~~~~~~~~~~ll~~~p~ 296 (359)
T COG1463 217 SDQLDRLLDNLATLTAALAARRDALDDALAALSALAATVNDLLAENRPNLNQALANLRPLATLLVDYLPGLEQLLHGLPT 296 (359)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhcch
Confidence 34455555555566666777777777777777777777777777777665555444555554444444444444333333
No 253
>KOG3067 consensus Translin family protein [General function prediction only]
Probab=48.79 E-value=1.1e+02 Score=29.24 Aligned_cols=101 Identities=15% Similarity=0.219 Sum_probs=51.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHH-----H
Q 020751 127 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI-----E 201 (322)
Q Consensus 127 svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~-----~ 201 (322)
++-+|++..-+.=++-|.++..-++.++.++.+.+..-..+...-+.+-.....-..|+..+++--.+|-.+.. +
T Consensus 6 sif~q~q~~id~e~~iRE~iravV~~ie~~~r~iq~~L~~vhq~~~~i~k~~~~are~~~~~kq~~~~LaE~~~~~qyyr 85 (226)
T KOG3067|consen 6 SIFIQLQDFIDKEQSIREKIRAVVDEIEEKLREIQLLLQNVHQNENLIPKECGLAREDLENIKQKYRMLAELPPAGQYYR 85 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHhhcCCccceEE
Confidence 45566666655555555555554444444444333332222211111111111222334444544444443332 3
Q ss_pred hhhhhhHHhHHHHHHHHHHHhhccCC
Q 020751 202 IEGKQDITTLGVKKLCDRARELENGR 227 (322)
Q Consensus 202 iE~kQd~Tn~GV~~LC~f~~~~~~~~ 227 (322)
..++=++..+++.+|..|+..++-+-
T Consensus 86 y~~~w~~~~Q~vv~l~alv~~Let~~ 111 (226)
T KOG3067|consen 86 YNGHWRRSTQRVVSLPALVAWLETGT 111 (226)
T ss_pred ecchHHHHHHHHHHHHHHHHHHhhcc
Confidence 44566888999999999999888773
No 254
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=48.71 E-value=2.2e+02 Score=30.60 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=15.0
Q ss_pred HHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020751 172 TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 207 (322)
Q Consensus 172 ~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd 207 (322)
..+++.+.....-++.-++-+..|..-+..+-..+|
T Consensus 286 e~LkeqLr~~qe~lqaSqq~~~~L~~EL~~~~~~RD 321 (546)
T PF07888_consen 286 EALKEQLRSAQEQLQASQQEAELLRKELSDAVNVRD 321 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433333
No 255
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=48.69 E-value=74 Score=31.18 Aligned_cols=61 Identities=13% Similarity=0.229 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHH---HhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhh
Q 020751 120 SLSDACNSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSKL 180 (322)
Q Consensus 120 nMsnAv~svtKqLeqVs~sLaaaKrhLs---qRId~vD~klDeq~eis~~i~~eV~~v~~dls~ 180 (322)
=+.++++.....|+...+.|+..+.+|. .+|+.+-.+.++...-...+++++......+.+
T Consensus 218 P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~r 281 (344)
T PF12777_consen 218 PKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLER 281 (344)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3666777777777777777776665543 344445555555444445555555444444333
No 256
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=48.53 E-value=1.4e+02 Score=28.18 Aligned_cols=85 Identities=15% Similarity=0.193 Sum_probs=46.9
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHH-HHHHHHhHhhhhhhHH-------HHHHHHHHHHHH--H----HHhhcchhhhhhH
Q 020751 119 RSLSDACNSVARQLEDVYSSISAA-QRQLSSKITSVDRDVN-------KIVEISQATQEE--V----TILRGRSKLIGDE 184 (322)
Q Consensus 119 RnMsnAv~svtKqLeqVs~sLaaa-KrhLsqRId~vD~klD-------eq~eis~~i~~e--V----~~v~~dls~ig~D 184 (322)
.+..+.+..+.++++++.+.+-.. +++...||-++...+- .+.++...+... . .+.+..+..+.++
T Consensus 145 d~~~~~l~~l~~~~~~le~~l~~~~~~~~l~~l~~l~~~l~~l~~~l~~~~~vl~~l~~~~~~~~~~~~~~~~~~dv~~~ 224 (318)
T TIGR00383 145 DSYFPLLENIEDELEELEDEIISGPTSTLMDEILSLRTELLALRRSLWPLRDVLNFLLRKTHLPIQTEEVREYLRDIYDH 224 (318)
T ss_pred hccHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHHHHHH
Confidence 345567778888888887776442 3344444544444444 333333333221 1 1223334445556
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 020751 185 FQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 185 v~~v~~~V~~Le~Ki~~iE 203 (322)
++.+.+++..+..+++.+.
T Consensus 225 ~~~l~~~~~~~~e~l~~l~ 243 (318)
T TIGR00383 225 ILSLLEMIETYRELLSSLM 243 (318)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777654
No 257
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=48.40 E-value=2.5e+02 Score=27.57 Aligned_cols=77 Identities=6% Similarity=0.160 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHH
Q 020751 137 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGV 213 (322)
Q Consensus 137 ~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV 213 (322)
+.|...++.|.+.++.+...-++..+-.+..++|..++...-.++-.+...++.-...++.+.++++..-+++..=+
T Consensus 53 ~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L 129 (314)
T PF04111_consen 53 EKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQL 129 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33555666666777777666666665556666666555554445555555555444444455555444444444333
No 258
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=48.38 E-value=2.6e+02 Score=31.97 Aligned_cols=123 Identities=15% Similarity=0.140 Sum_probs=0.0
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHH---------------------------------------------------
Q 020751 145 QLSSKITSVDRDVNKIVEISQATQEEVTI--------------------------------------------------- 173 (322)
Q Consensus 145 hLsqRId~vD~klDeq~eis~~i~~eV~~--------------------------------------------------- 173 (322)
+|++|++++...+|+..++=....+-|.+
T Consensus 369 el~~rledir~emDd~~~~f~lL~n~vkdT~aE~yfLSILQhlllirnDy~~rpqYykLIEecISqIvlHr~~~DPdf~y 448 (1102)
T KOG1924|consen 369 ELSGRLEDIRAEMDDANEVFELLANTVKDTGAEPYFLSILQHLLLIRNDYYIRPQYYKLIEECISQIVLHRTGMDPDFKY 448 (1102)
T ss_pred HHHhHHHhhhhhhccHHHHHHHHHHhhhhccccchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhcCCCCCCcch
Q ss_pred ---hhcchhhhhhHH------HHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhhccCCCccceeccccCcccc--
Q 020751 174 ---LRGRSKLIGDEF------QSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLSRT-- 242 (322)
Q Consensus 174 ---v~~dls~ig~Dv------~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~Q~~~s~s~~~-- 242 (322)
..-|++.+-+++ +.+.+-...++.|++.-...-.-+.+-....-+ +-..++-..|+.+|-+-.|
T Consensus 449 r~~l~id~~~liD~~vdkak~eeseqkA~e~~kk~~ke~ta~qe~qael~k~e~-----Ki~~l~ae~~al~s~~~~~~~ 523 (1102)
T KOG1924|consen 449 RFRLDIDLTELIDKMVDKAKAEESEQKAAELEKKFDKELTARQEAQAELQKHEE-----KIKLLEAEKQALSSPSQLLPI 523 (1102)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh-----hcccCchhhhhccCcccCCCC
Q ss_pred --cccCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 020751 243 --TLELPGITPSSRSGSLHPLPLEPPSPSXXX 272 (322)
Q Consensus 243 --ale~~~~~p~sr~~slpp~~~e~~sps~~~ 272 (322)
.+-.||..|..+-..-||+|..||=|.-+.
T Consensus 524 ~~~iP~PP~~pp~gG~g~pppPppPPlpggag 555 (1102)
T KOG1924|consen 524 DGGIPPPPPLPPTGGTGPPPPPPPPPLPGGAG 555 (1102)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
No 259
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=48.31 E-value=1.8e+02 Score=28.12 Aligned_cols=56 Identities=13% Similarity=0.334 Sum_probs=31.6
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 020751 116 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 171 (322)
Q Consensus 116 VTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV 171 (322)
+.|..+-++-..++.++.+.++.|...++.....|+..-++++...+-...+.+++
T Consensus 127 ~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~lN~~I 182 (322)
T TIGR02492 127 ALRQAVLESAQALANSFNQTSNELQDLRKGINAEIKSAVTEINSLLKQIASLNKEI 182 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666666677777777777766666666555544444444333333333333
No 260
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=48.27 E-value=1.7e+02 Score=24.91 Aligned_cols=52 Identities=23% Similarity=0.362 Sum_probs=41.9
Q ss_pred cCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 020751 110 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 161 (322)
Q Consensus 110 fSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~ 161 (322)
|.|-+--.|+.+..-+..+.+.|+.+.+++..-...+.++|...|+.+|...
T Consensus 3 ~~~~l~~~~~el~~m~~~~~~ml~~~~~~~~~~d~~~~~~i~~~e~~id~l~ 54 (212)
T TIGR02135 3 FDEELKELREELLEMGGLVEEQLEDAVRALTEKDRELARKVIEDDDQINALE 54 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHChHHHHHHH
Confidence 3445566788888888899999999999998777788888888888887765
No 261
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=48.24 E-value=39 Score=33.77 Aligned_cols=19 Identities=26% Similarity=0.525 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 020751 185 FQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 185 v~~v~~~V~~Le~Ki~~iE 203 (322)
|+.+..-+..||.++..++
T Consensus 146 i~e~Eeris~lEd~~~~i~ 164 (370)
T PF02994_consen 146 IDELEERISELEDRIEEIE 164 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHh
Confidence 3333333444444444333
No 262
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=48.21 E-value=1.3e+02 Score=31.02 Aligned_cols=89 Identities=11% Similarity=0.094 Sum_probs=54.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH-----------HHHHHHhhcchhhhhhHHHHHHHH
Q 020751 123 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT-----------QEEVTILRGRSKLIGDEFQSVRDI 191 (322)
Q Consensus 123 nAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i-----------~~eV~~v~~dls~ig~Dv~~v~~~ 191 (322)
.+...--+.|++--..+.....++..+++.++.++.-...+.... ...+.++..-+..++..+..++..
T Consensus 67 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (525)
T TIGR02231 67 RPDPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTE 146 (525)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 444443444555555555566666677777777765555554322 113455666666677777777777
Q ss_pred HHHHHHHHHHhhhhhhHHhH
Q 020751 192 VQTLESKLIEIEGKQDITTL 211 (322)
Q Consensus 192 V~~Le~Ki~~iE~kQd~Tn~ 211 (322)
...|+.++..++.+.+....
T Consensus 147 ~~~~~~~~~~~~~~l~~l~~ 166 (525)
T TIGR02231 147 DREAERRIRELEKQLSELQN 166 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 77777777777776555443
No 263
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=48.14 E-value=49 Score=25.95 Aligned_cols=43 Identities=12% Similarity=0.252 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhh
Q 020751 139 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 181 (322)
Q Consensus 139 LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~i 181 (322)
...+..+|..+++.++..++.+..-.+.+.+++.+++..+...
T Consensus 60 ~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~ 102 (106)
T PF01920_consen 60 KEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYEL 102 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 264
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=48.07 E-value=2.4e+02 Score=26.50 Aligned_cols=69 Identities=10% Similarity=0.159 Sum_probs=38.5
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhH
Q 020751 140 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 208 (322)
Q Consensus 140 aaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~ 208 (322)
..-|.+|...++++-..+++...--..-...-..+..++..+..|++.....-..|+.+|..+...=+|
T Consensus 67 ~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~f 135 (312)
T PF00038_consen 67 SKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEF 135 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHH
Confidence 333444444444444444444433333344444445555555567777777777788887777755444
No 265
>COG1511 Predicted membrane protein [Function unknown]
Probab=47.91 E-value=2e+02 Score=31.65 Aligned_cols=104 Identities=13% Similarity=0.228 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHhHHHHHHHH-H-HHHH-------HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHH
Q 020751 120 SLSDACNSVARQLEDVYSSI-S-AAQR-------QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD 190 (322)
Q Consensus 120 nMsnAv~svtKqLeqVs~sL-a-aaKr-------hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~ 190 (322)
.++++.+.+++++-..+... . .+=+ .....+..+.+-+++.....+.+.+....+..-...+.+++..+..
T Consensus 148 ~~~~l~~~is~~~t~t~~~~v~~~~i~~~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 227 (780)
T COG1511 148 AADKLLNEISKELTETYTKVVAFPTIYDLGGGVKGAADGAEKLKDGTDEASNGNKKLSDLLNTLNNSSATFSDGLNALTS 227 (780)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhhhhHHHHhh
Confidence 44555555666555554444 1 1111 1223344444444444444444444444444444444444444444
Q ss_pred HHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhh
Q 020751 191 IVQTLESKLIEIEGKQDITTLGVKKLCDRAREL 223 (322)
Q Consensus 191 ~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~f~~~~ 223 (322)
-+..+.+++..+....+.-+.|+..|-+.++.+
T Consensus 228 ~~~~l~d~l~~i~~~~~~~~~~~~~l~~~~~~i 260 (780)
T COG1511 228 GLTTLTDGLNQLDSGLGTLAAGIGELKQGAEQL 260 (780)
T ss_pred hhHHHhhhHHHHHhhhhHHhhhhHHHHHHHHHH
Confidence 444444444444444444444444444443333
No 266
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=47.80 E-value=49 Score=37.28 Aligned_cols=66 Identities=14% Similarity=0.228 Sum_probs=48.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHH
Q 020751 126 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 191 (322)
Q Consensus 126 ~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~ 191 (322)
+.=-|||++=-++|..-+++|++||+.|.+++-.+++..+.+.....-....+++..-.|+..+++
T Consensus 436 nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~k 501 (1118)
T KOG1029|consen 436 NAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEK 501 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344578888889999999999999999999888888777777666555555555555555555554
No 267
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=47.70 E-value=2.1e+02 Score=25.76 Aligned_cols=42 Identities=19% Similarity=0.348 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020751 166 ATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 207 (322)
Q Consensus 166 ~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd 207 (322)
...+++..++..+......+..++.-+..|+.||..+..+.+
T Consensus 95 ~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~ 136 (221)
T PF04012_consen 95 DLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKRE 136 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777777777777777777776655
No 268
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=47.57 E-value=3.5e+02 Score=28.27 Aligned_cols=71 Identities=7% Similarity=0.128 Sum_probs=52.0
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHH
Q 020751 150 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA 220 (322)
Q Consensus 150 Id~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~f~ 220 (322)
+..+-..|++...=....+.+...++..+..+..+++..+..+.+.|.||.....--+.+...--.--.-+
T Consensus 367 ~~~l~~~Lqql~~Eae~Ak~ea~~~~~E~~~~k~E~e~~ka~i~t~E~rL~aa~ke~eaaKasEa~Ala~i 437 (522)
T PF05701_consen 367 MSELPKALQQLSSEAEEAKKEAEEAKEEVEKAKEEAEQTKAAIKTAEERLEAALKEAEAAKASEALALAEI 437 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777777788888888888999999999999999999998876655555555444433333
No 269
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=47.53 E-value=1.3e+02 Score=31.21 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=25.5
Q ss_pred eeeEEeccCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHH--HHHHHhHhhhhhhHHH
Q 020751 100 YGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQ--RQLSSKITSVDRDVNK 159 (322)
Q Consensus 100 YgYmwWKGwsfSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaK--rhLsqRId~vD~klDe 159 (322)
-||-||++- .-..+.=...+.+|++....+....| +.|..+|.....+++.
T Consensus 49 gg~~f~QqQ---------~~~~~~~l~a~~~q~~~~~~aqe~q~l~~ql~~~~~~~q~el~~ 101 (391)
T COG2959 49 GGYYFGQQQ---------NVLQTQELQALQQQLKALQLAQENQKLLAQLESLIAQQQAELDR 101 (391)
T ss_pred hHHHHHHHH---------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677764 12233334445555555555555555 5555555444444444
No 270
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=47.50 E-value=2.1e+02 Score=25.83 Aligned_cols=48 Identities=15% Similarity=0.180 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhH
Q 020751 137 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 184 (322)
Q Consensus 137 ~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~D 184 (322)
..|..=++++..-|+.-...-++..++.+..++++.+++....+|+.|
T Consensus 37 ~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I~~e 84 (155)
T PRK06569 37 EIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRLKKE 84 (155)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555566666666666666666555
No 271
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=47.31 E-value=1e+02 Score=25.23 Aligned_cols=48 Identities=17% Similarity=0.186 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHH
Q 020751 118 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQ 165 (322)
Q Consensus 118 KRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~ 165 (322)
++.+...++.+-+....|-+.|..+...|+.=+++-+-...++.+-..
T Consensus 42 ~~~~~~~~~~~~~~~~~vi~~L~~a~~~l~~I~~n~~lT~~q~~~~I~ 89 (113)
T PF02520_consen 42 KAQVQAQKEEVRKNVTAVISNLSSAFAKLSAILDNKSLTRQQQQEAID 89 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 333344444444444444444444444444444444333333333333
No 272
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=47.25 E-value=79 Score=34.51 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=30.4
Q ss_pred CCcCchhhhhhh--hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhh
Q 020751 108 WKLPDMMFATRR--SLSDACNSVARQLEDVYSSISAAQRQLSSKITSV 153 (322)
Q Consensus 108 wsfSDlMfVTKR--nMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~v 153 (322)
|.++|.-|...+ ..-+|+..+..+++|+.+-+..+|.-|.+=.+++
T Consensus 12 i~~~~~~~L~~~i~~~~~~~~a~~~~~~qi~~Wi~k~k~~l~~L~~~l 59 (683)
T PF08580_consen 12 ILLPIALYLSESIPTAFNAVKALSGAAEQILDWIQKAKDVLYGLREGL 59 (683)
T ss_pred cccchHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 444555555554 2334555666799999999999999887654443
No 273
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=47.24 E-value=48 Score=27.91 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=11.3
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHH
Q 020751 147 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 186 (322)
Q Consensus 147 sqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~ 186 (322)
+..+..+++++++...=...++++|..++.++.+....++
T Consensus 61 s~~L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~ 100 (133)
T PF06148_consen 61 STNLVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIE 100 (133)
T ss_dssp -------------HHHHHHHHHHHHHHHHHS-STTHHHHH
T ss_pred HHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444433333
No 274
>TIGR03818 MotA1 flagellar motor stator protein MotA. This model represents one family of MotA proteins which are often not identified by the "transporter, MotA/TolQ/ExbB proton channel family" model, pfam01618.
Probab=47.24 E-value=98 Score=30.12 Aligned_cols=93 Identities=12% Similarity=0.221 Sum_probs=69.9
Q ss_pred HHHHHHHhhhheeeEEecc-----CCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh---HhhhhhhHHHH
Q 020751 89 YGVIVVIVAVGYGYVWWKG-----WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK---ITSVDRDVNKI 160 (322)
Q Consensus 89 y~l~a~iGavGYgYmwWKG-----wsfSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqR---Id~vD~klDeq 160 (322)
.++++++|++.+||++=.| |.++-+|-|-=-.+ ++.-++.-+..+..++...|+-+..+ -+...+-++..
T Consensus 5 iGli~~~~~v~~g~~l~Gg~~~~l~~~~~~lIV~Ggtl--ga~lis~p~~~~~~~~~~~~~~f~~~~~~~~~~~~li~~l 82 (282)
T TIGR03818 5 IGLVVVLGCVFGGYLLAGGHLAALWQPAELLIIGGAAI--GAFIIANPPKVLKETLKGLPKVFKGSKYGKADYLDLLSLL 82 (282)
T ss_pred HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHhcCCCCCccCHHHHHHHH
Confidence 4567788888888887444 66777777765444 34457778899999999999988777 55667888888
Q ss_pred HHHHHHHHHH-HHHhhcchhhhhh
Q 020751 161 VEISQATQEE-VTILRGRSKLIGD 183 (322)
Q Consensus 161 ~eis~~i~~e-V~~v~~dls~ig~ 183 (322)
.+++...|++ +-.+..+++++.+
T Consensus 83 ~~la~~aR~~GllaLE~~v~~~~~ 106 (282)
T TIGR03818 83 YELLRKARREGLMAIESHIENPEE 106 (282)
T ss_pred HHHHHHHHhcCHHHHHhhhcCccc
Confidence 8999998888 6666666766664
No 275
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=47.08 E-value=52 Score=32.49 Aligned_cols=61 Identities=13% Similarity=0.151 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHH
Q 020751 139 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 199 (322)
Q Consensus 139 LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki 199 (322)
|-.=|.-|...||.|-++|+++.|.-.+.+.+..+-..+++....-++.++.-+.-|-..|
T Consensus 103 LDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 103 LDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344788999999999999999999999999987666666665555555554444444444
No 276
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=46.55 E-value=33 Score=29.02 Aligned_cols=55 Identities=13% Similarity=0.298 Sum_probs=49.4
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHH
Q 020751 143 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 197 (322)
Q Consensus 143 KrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 197 (322)
|+.|-.+|..+..++.+..+-...++++|.++-+.=.++.-+-+.++..+..++.
T Consensus 3 k~~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 3 KKELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7889999999999999999999999999999888888888899999999988876
No 277
>PF05802 EspB: Enterobacterial EspB protein
Probab=46.42 E-value=2.2e+02 Score=28.66 Aligned_cols=63 Identities=16% Similarity=0.160 Sum_probs=52.6
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020751 142 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 204 (322)
Q Consensus 142 aKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~ 204 (322)
+.+.++..=+.+++.+++..++-++|-.--+++.+.++.+.+||...-+....|-..+..-..
T Consensus 148 q~kgaqkyaEsl~d~~~KAseiMQQim~t~T~Aa~r~s~v~ddv~~~a~~as~~ae~~A~Aa~ 210 (317)
T PF05802_consen 148 QQKGAQKYAESLADAMEKASEIMQQIMATATKAASRTSGVADDVATSAQKASQLAEQAADAAQ 210 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457788888999999999999999999999999999999999999877766666555544433
No 278
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=46.41 E-value=2.5e+02 Score=32.17 Aligned_cols=115 Identities=21% Similarity=0.236 Sum_probs=65.3
Q ss_pred hhhhhhHHHHHHHHHHhHHHHH---------HHHHHHH----HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhh
Q 020751 115 FATRRSLSDACNSVARQLEDVY---------SSISAAQ----RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 181 (322)
Q Consensus 115 fVTKRnMsnAv~svtKqLeqVs---------~sLaaaK----rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~i 181 (322)
|.+.+...+=+.++.+||+.|+ .+.+..| ..|..+|+.++....+..+-...+-.++..+.+
T Consensus 735 ~qq~~q~~srl~~~~aql~~v~~~~~eL~~~~~~~~~~e~E~~~lEe~~d~~~ee~~el~a~v~~~~~qi~~lE~----- 809 (984)
T COG4717 735 EQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEELHAQVAALSRQIAQLEG----- 809 (984)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCchhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 5688888888999999999642 2222222 111122222222222222222222222211111
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhhccCCCccceec
Q 020751 182 GDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQA 234 (322)
Q Consensus 182 g~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~Q~ 234 (322)
|+.+..++++-..|=.+|.++--+=-..-.++..|-+.++..+..+.|..+|-
T Consensus 810 g~~~a~lr~~~~slk~~l~e~ar~Wasl~~~~~vl~e~l~~~ke~rlP~vi~~ 862 (984)
T COG4717 810 GGTVAELRQRRESLKEDLEEKARKWASLRLAVQVLEEALRLFKERRLPAVIQE 862 (984)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHH
Confidence 34455666677777777777776666677777778888888888888887765
No 279
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=46.24 E-value=57 Score=25.04 Aligned_cols=35 Identities=11% Similarity=0.264 Sum_probs=15.1
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020751 113 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSS 148 (322)
Q Consensus 113 lMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsq 148 (322)
++|+.+.+ .+-...+....+.+.+.+.....+...
T Consensus 17 lL~aP~sG-~e~R~~l~~~~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 17 LLFAPKSG-KETREKLKDKAEDLKDKAKDLYEEAKE 51 (74)
T ss_pred HHhCCCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444333 334444444444444444444444333
No 280
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=46.03 E-value=2.1e+02 Score=25.25 Aligned_cols=96 Identities=14% Similarity=0.185 Sum_probs=61.2
Q ss_pred cCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH---HHHHHHHHHH-----HHhhcchhhh
Q 020751 110 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV---EISQATQEEV-----TILRGRSKLI 181 (322)
Q Consensus 110 fSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~---eis~~i~~eV-----~~v~~dls~i 181 (322)
+.|+|.=.-++..+-++.+-..|++++..=..|+.....=-+.+...+.... .+-.++.++| ......+..+
T Consensus 23 i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~~~~q~~~~~n~~i~~~~s~~l~~~~~~~~e~~i~~~ 102 (146)
T PF08702_consen 23 IQDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSLRPRQKQAKPNDNIYNQYSKSLRKMIIYILETKIINQ 102 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccccCCcccHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4577878888888888888888888887777666555444444444432211 2333333332 3333444555
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhh
Q 020751 182 GDEFQSVRDIVQTLESKLIEIEGK 205 (322)
Q Consensus 182 g~Dv~~v~~~V~~Le~Ki~~iE~k 205 (322)
-.-+..++.++..+..||.++|-+
T Consensus 103 ~~~I~~Lq~~~~~~~~ki~~Le~~ 126 (146)
T PF08702_consen 103 PSNIRVLQNILRSNRQKIQRLEQD 126 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778888888888888888754
No 281
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=45.97 E-value=74 Score=31.12 Aligned_cols=15 Identities=20% Similarity=0.352 Sum_probs=7.9
Q ss_pred cchhhhhhhHHHHHHh
Q 020751 23 SSVSDAVGGTLKIVSK 38 (322)
Q Consensus 23 sDv~~~lsgalk~l~K 38 (322)
||+ ..+|-++|-+.=
T Consensus 17 sDv-E~iSkalQr~aL 31 (290)
T COG4026 17 SDV-EVISKALQRLAL 31 (290)
T ss_pred chH-HHHHHHHHHhhh
Confidence 444 455666665543
No 282
>PRK10869 recombination and repair protein; Provisional
Probab=45.56 E-value=1.2e+02 Score=31.93 Aligned_cols=106 Identities=15% Similarity=0.153 Sum_probs=56.7
Q ss_pred CcCchhhhhhhhHHHH------HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhh
Q 020751 109 KLPDMMFATRRSLSDA------CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 182 (322)
Q Consensus 109 sfSDlMfVTKRnMsnA------v~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig 182 (322)
+.-|.+.-..+.|... ...+...|++++..|..+.+.|..-.+.++-.=++..++.+.+ ..+..++. ..|
T Consensus 241 ~~~~~l~~~~~~l~~~~~~d~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl-~~l~~L~r---Kyg 316 (553)
T PRK10869 241 NILSQLYSAKQLLSELIGMDSKLSGVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRL-SKQISLAR---KHH 316 (553)
T ss_pred cHHHHHHHHHHHHHHHhhhCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHH-HHHHHHHH---HhC
Confidence 3455566666666543 3557777888888888888888887776654433333333222 12222222 234
Q ss_pred hHHHHHHHHHHHHHHHHH----------HhhhhhhHHhHHHHHHHH
Q 020751 183 DEFQSVRDIVQTLESKLI----------EIEGKQDITTLGVKKLCD 218 (322)
Q Consensus 183 ~Dv~~v~~~V~~Le~Ki~----------~iE~kQd~Tn~GV~~LC~ 218 (322)
.+++.|-..-..++.+++ .++...+-.-.-+..+|+
T Consensus 317 ~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~ 362 (553)
T PRK10869 317 VSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQ 362 (553)
T ss_pred CCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444 444444444445555544
No 283
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=45.54 E-value=23 Score=29.29 Aligned_cols=18 Identities=39% Similarity=0.739 Sum_probs=13.0
Q ss_pred HHHhhhheeeEEeccCCc
Q 020751 93 VVIVAVGYGYVWWKGWKL 110 (322)
Q Consensus 93 a~iGavGYgYmwWKGwsf 110 (322)
+++.++=++|.|||-|+.
T Consensus 11 ~~v~~~i~~y~~~k~~ka 28 (87)
T PF10883_consen 11 GAVVALILAYLWWKVKKA 28 (87)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 355566678999998853
No 284
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=45.48 E-value=2.5e+02 Score=25.82 Aligned_cols=38 Identities=8% Similarity=0.177 Sum_probs=29.5
Q ss_pred CchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020751 111 PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSS 148 (322)
Q Consensus 111 SDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsq 148 (322)
.+-|.-.|+.+.+....+-+...+....|..+|+..-+
T Consensus 95 ~~~~~~~rK~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~ 132 (236)
T cd07651 95 ASSYTQKRKKIQSHMEKLLKKKQDQEKYLEKAREKYEA 132 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788888888888888888888888888887653
No 285
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=45.43 E-value=3.9e+02 Score=28.19 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=16.2
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHH
Q 020751 129 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKI 160 (322)
Q Consensus 129 tKqLeqVs~sLaaaKrhLsqRId~vD~klDeq 160 (322)
...++.+.+....+.++|..+++.+...+.+.
T Consensus 91 ~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 122 (779)
T PRK11091 91 VAKLEEMRERDLELNVQLKDNIAQLNQEIAER 122 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555555555555554443
No 286
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=45.30 E-value=1.1e+02 Score=21.95 Aligned_cols=36 Identities=14% Similarity=0.299 Sum_probs=15.0
Q ss_pred HHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751 167 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 202 (322)
Q Consensus 167 i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 202 (322)
|...|.+++.=...|+.+|+.=..++..+|..++..
T Consensus 9 l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~ 44 (63)
T PF05739_consen 9 LEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRA 44 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHH
Confidence 333344444444444444444444444444444333
No 287
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=45.12 E-value=1.2e+02 Score=32.67 Aligned_cols=114 Identities=12% Similarity=0.137 Sum_probs=69.0
Q ss_pred CcCchhhhhhhhHHHHH------HHHHHhHHHHHHHHHHHHHHHHHhHhhhhhh---HHHHHHHHHHHHHHHHHhhcchh
Q 020751 109 KLPDMMFATRRSLSDAC------NSVARQLEDVYSSISAAQRQLSSKITSVDRD---VNKIVEISQATQEEVTILRGRSK 179 (322)
Q Consensus 109 sfSDlMfVTKRnMsnAv------~svtKqLeqVs~sLaaaKrhLsqRId~vD~k---lDeq~eis~~i~~eV~~v~~dls 179 (322)
+.-|.+|-..+.|++.+ ..+.+.|+..+..|..+..+|..-++.++-. |++..+=...++.=--.-+.+++
T Consensus 242 ~~~~~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~ 321 (557)
T COG0497 242 SALSLLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIE 321 (557)
T ss_pred hHHHHHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHH
Confidence 45677777777776544 3667777777777788888777777777764 55554444444444444444455
Q ss_pred hhhhHHHHHHHHHHHH---HHHHHHhhhhhhHHhHHHHHHHHHHHh
Q 020751 180 LIGDEFQSVRDIVQTL---ESKLIEIEGKQDITTLGVKKLCDRARE 222 (322)
Q Consensus 180 ~ig~Dv~~v~~~V~~L---e~Ki~~iE~kQd~Tn~GV~~LC~f~~~ 222 (322)
.+-.-.+.++.=...| |.++..+|..-+..-.-....|+-...
T Consensus 322 ~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~ 367 (557)
T COG0497 322 DLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSA 367 (557)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444333 445566666666666666666665543
No 288
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=44.84 E-value=41 Score=35.37 Aligned_cols=37 Identities=8% Similarity=0.084 Sum_probs=25.4
Q ss_pred HHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020751 168 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 204 (322)
Q Consensus 168 ~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~ 204 (322)
++...++...++.+..+++.+......+|.||+.+|.
T Consensus 75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEa 111 (475)
T PRK13729 75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQ 111 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3346677777777777777777777777777775554
No 289
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=44.75 E-value=1e+02 Score=30.34 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=37.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 020751 123 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 177 (322)
Q Consensus 123 nAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~d 177 (322)
.++..+...|+++-......=.++++||++-..+|+...+=+...+..|..+++-
T Consensus 18 Eti~qi~~aL~~L~~v~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~gs 72 (297)
T PF11945_consen 18 ETILQIADALEYLDKVSNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQGS 72 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4556666677777777777777777777777777776666666666666666553
No 290
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=44.66 E-value=1.3e+02 Score=27.78 Aligned_cols=57 Identities=12% Similarity=0.402 Sum_probs=26.2
Q ss_pred HHHHhHHHHHH----HHHHHHHHHHHhHhhhhhhHHHHHHHH---HHHHHHHHHhhcchhhhhh
Q 020751 127 SVARQLEDVYS----SISAAQRQLSSKITSVDRDVNKIVEIS---QATQEEVTILRGRSKLIGD 183 (322)
Q Consensus 127 svtKqLeqVs~----sLaaaKrhLsqRId~vD~klDeq~eis---~~i~~eV~~v~~dls~ig~ 183 (322)
.|-+.|+.+.. .+..++++|...|+.+..+++...+++ +.++++++.+..+|++|..
T Consensus 102 QVqqeL~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 102 QVQQELSSTFARLCQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444433 334456666666666666555544443 4455555555555555443
No 291
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=44.43 E-value=3.4e+02 Score=27.39 Aligned_cols=64 Identities=14% Similarity=0.257 Sum_probs=30.4
Q ss_pred hhhhhhH---HHHHHHHHHhHHHHHHHHHHHHHHHH--------------HhHhhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 020751 115 FATRRSL---SDACNSVARQLEDVYSSISAAQRQLS--------------SKITSVDRDVNKIVEISQATQEEVTILRGR 177 (322)
Q Consensus 115 fVTKRnM---snAv~svtKqLeqVs~sLaaaKrhLs--------------qRId~vD~klDeq~eis~~i~~eV~~v~~d 177 (322)
|-|..+| .+..+.+.+.+.++.+.|..+.+... ..|..|-.++.+.++-++.++.-|.++=.|
T Consensus 14 fp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V~~it~d 93 (383)
T PF04100_consen 14 FPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESEQMVQEITRD 93 (383)
T ss_pred CCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 33455555555666666655554332 233444444444444444444444444433
Q ss_pred h
Q 020751 178 S 178 (322)
Q Consensus 178 l 178 (322)
+
T Consensus 94 I 94 (383)
T PF04100_consen 94 I 94 (383)
T ss_pred H
Confidence 3
No 292
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=44.14 E-value=3e+02 Score=26.50 Aligned_cols=31 Identities=6% Similarity=0.234 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 020751 119 RSLSDACNSVARQLEDVYSSISAAQRQLSSK 149 (322)
Q Consensus 119 RnMsnAv~svtKqLeqVs~sLaaaKrhLsqR 149 (322)
..|++..+.++..+++.+.+|...++++.++
T Consensus 103 ~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~ 133 (240)
T cd07667 103 GELAEPLEGVSACIGNCSTALEELTEDMTED 133 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 6899999999999999999999999998773
No 293
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=44.07 E-value=3e+02 Score=26.39 Aligned_cols=76 Identities=18% Similarity=0.246 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH-HHHHhhcchhhhhhHHHHHHHH----HHH
Q 020751 120 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQE-EVTILRGRSKLIGDEFQSVRDI----VQT 194 (322)
Q Consensus 120 nMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~-eV~~v~~dls~ig~Dv~~v~~~----V~~ 194 (322)
=|.++++.|-||+.++-..+++ .+.+..+|-+|=|+.........+ |-..++..|.++.+++..|++- |.-
T Consensus 15 ~i~~~i~~vEkhFg~lC~~~a~----ytRKtArLRDk~D~lak~l~~yA~~E~~~l~~~L~~fae~la~vqDYRqa~v~R 90 (219)
T PF06730_consen 15 FIQDRITNVEKHFGELCQLFAA----YTRKTARLRDKGDELAKQLQDYANTENPNLKLGLKNFAECLAKVQDYRQAEVER 90 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhchhhHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888888888888776 455667777777765554444433 3446777899999999888754 555
Q ss_pred HHHHH
Q 020751 195 LESKL 199 (322)
Q Consensus 195 Le~Ki 199 (322)
||.|+
T Consensus 91 lE~KV 95 (219)
T PF06730_consen 91 LEAKV 95 (219)
T ss_pred HHHHh
Confidence 55554
No 294
>PRK04098 sec-independent translocase; Provisional
Probab=43.96 E-value=2.5e+02 Score=25.69 Aligned_cols=51 Identities=10% Similarity=0.366 Sum_probs=28.4
Q ss_pred hhhhHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhHhhhhh--hHHHHHHHHHHH
Q 020751 117 TRRSLSDACNSVARQ--LEDVYSSISAAQRQLSSKITSVDR--DVNKIVEISQAT 167 (322)
Q Consensus 117 TKRnMsnAv~svtKq--LeqVs~sLaaaKrhLsqRId~vD~--klDeq~eis~~i 167 (322)
-||.++++-+.+-.. ++.+-+.+...|+.|.+-.++|.. .+|+..++....
T Consensus 39 ~K~~~~~~k~~l~~Ei~~~elk~e~~k~k~~l~~~~~~l~~~~~~eel~~~~~~~ 93 (158)
T PRK04098 39 VKKTINDAKSTLDKEINIEEIKEEALKYKKEFESAVESLKKKLKFEELDDLKITA 93 (158)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHhhhh
Confidence 345555554444442 344455556667777777777766 555555554333
No 295
>PRK11519 tyrosine kinase; Provisional
Probab=43.81 E-value=4e+02 Score=28.80 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020751 121 LSDACNSVARQLEDVYSSISAAQRQLS 147 (322)
Q Consensus 121 MsnAv~svtKqLeqVs~sLaaaKrhLs 147 (322)
..++.+=+.+||+++...|..+.+.|.
T Consensus 265 a~~a~~fL~~ql~~l~~~L~~aE~~l~ 291 (719)
T PRK11519 265 ASKSLAFLAQQLPEVRSRLDVAENKLN 291 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666666655543
No 296
>PF07957 DUF3294: Protein of unknown function (DUF3294); InterPro: IPR012917 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This is a family of mitochondrial ribosomal proteins, which appears to be fungal specific [].
Probab=43.69 E-value=51 Score=31.45 Aligned_cols=66 Identities=18% Similarity=0.211 Sum_probs=47.2
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHH--------HHHHHhhhhhhHHhHHH
Q 020751 142 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE--------SKLIEIEGKQDITTLGV 213 (322)
Q Consensus 142 aKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le--------~Ki~~iE~kQd~Tn~GV 213 (322)
|-.+|.++|+.|...+..|..++..|.+.|-+++- ..++.-|..++ .+-..++...-.||.-+
T Consensus 5 tle~Lk~qV~~L~~lV~KQs~lIskTGq~vlelQv---------~~~K~~~~~~~~~~~~~~~~~~~~~d~~D~aTNeDL 75 (216)
T PF07957_consen 5 TLEELKKQVDELQALVKKQSKLISKTGQQVLELQV---------KKQKRDVNSFDKSFWPKSSSKQAQIDMSDYATNEDL 75 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhcccccccccccCcCCCccccccccchhH
Confidence 45788899999999999999999999999877763 44444455555 44455666666666644
Q ss_pred HHH
Q 020751 214 KKL 216 (322)
Q Consensus 214 ~~L 216 (322)
--|
T Consensus 76 VQL 78 (216)
T PF07957_consen 76 VQL 78 (216)
T ss_pred HHH
Confidence 444
No 297
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=43.54 E-value=1e+02 Score=31.27 Aligned_cols=73 Identities=11% Similarity=0.156 Sum_probs=46.3
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhh---hhhH-HHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHH
Q 020751 148 SKITSVDRDVNKIVEISQATQEEVTILRGRSKL---IGDE-FQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA 220 (322)
Q Consensus 148 qRId~vD~klDeq~eis~~i~~eV~~v~~dls~---ig~D-v~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~f~ 220 (322)
.+|-.+|.+.-+...-....+.+-+.+...+.. -+.| .+.+..-+..|..+|..+|.+......-+..++..+
T Consensus 30 d~i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l 106 (418)
T TIGR00414 30 EKLIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSI 106 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445555555555444445555554444444433 2345 677888888889999999998888877777765533
No 298
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=43.53 E-value=1.7e+02 Score=26.91 Aligned_cols=21 Identities=19% Similarity=0.507 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q 020751 186 QSVRDIVQTLESKLIEIEGKQ 206 (322)
Q Consensus 186 ~~v~~~V~~Le~Ki~~iE~kQ 206 (322)
..+...|..++.+|.+|+.++
T Consensus 138 ~~i~e~IKd~de~L~~I~d~i 158 (163)
T PF03233_consen 138 KLIEELIKDFDERLKEIRDKI 158 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666554
No 299
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=43.45 E-value=1.6e+02 Score=26.63 Aligned_cols=70 Identities=17% Similarity=0.110 Sum_probs=41.2
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHH
Q 020751 145 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 214 (322)
Q Consensus 145 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~ 214 (322)
++...|+.++.+|.....+...+-+.-.++-.++..+|.=+..+=..=.+|+..|..+-..-+....+..
T Consensus 18 e~~eyi~~L~~~l~~~~kv~~Rl~kr~~el~~~~~efg~~~~~ls~~E~~L~~~L~~~~~~~~~~~~~~~ 87 (200)
T cd07624 18 KMNEYLTLFGEKLGTIERISQRIHKERIEYFDELKEYSPIFQLWSASETELAPLLEGVSSAVERCTAALE 87 (200)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788888777777777777777777776666655554443333344444444433333333333
No 300
>COG3910 Predicted ATPase [General function prediction only]
Probab=43.41 E-value=31 Score=33.13 Aligned_cols=45 Identities=18% Similarity=0.250 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhcC--CCceEEEeCCCCCCCCchHHHHHHHhhhheeeEEeccCC
Q 020751 58 AEVSSVQQELSHV--PRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWK 109 (322)
Q Consensus 58 aQV~~LaqElr~L--sR~ITVvn~~ssg~gg~~y~l~a~iGavGYgYmwWKGws 109 (322)
.-++.|+. .| .-|||++.|. +++| +.+++=+| |+||+|=---|-+
T Consensus 24 Pa~r~l~~---~LeF~apIT~i~GE--NGsG-KSTLLEai-A~~~~~n~aGg~~ 70 (233)
T COG3910 24 PAFRHLEE---RLEFRAPITFITGE--NGSG-KSTLLEAI-AAGMGFNAAGGGK 70 (233)
T ss_pred hHHHhhhh---hccccCceEEEEcC--CCcc-HHHHHHHH-HhhccccccCCCc
Confidence 34777776 45 7799999998 4444 55664344 5677776655554
No 301
>PF01996 F420_ligase: F420-0:Gamma-glutamyl ligase; InterPro: IPR002847 This entry contains F420-0:gamma-glutamyl ligase and related proteins. F420-0:gamma-glutamyl ligase catalyzes the GTP-dependent successive addition of multiple gamma-linked L-glutamates to the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) to form polyglutamated F420 derivatives [, , , ].; PDB: 2G9I_A 2PHN_A.
Probab=43.28 E-value=4.1 Score=38.08 Aligned_cols=73 Identities=21% Similarity=0.211 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcC-CCceEEEeCCCCCCCCchHHH-HHHHhhhheeeEE-eccC--CcCchhhhhhhhHHHHHHHHHH
Q 020751 57 LAEVSSVQQELSHV-PRSVIIETSSGSGTGAKKYGV-IVVIVAVGYGYVW-WKGW--KLPDMMFATRRSLSDACNSVAR 130 (322)
Q Consensus 57 ~aQV~~LaqElr~L-sR~ITVvn~~ssg~gg~~y~l-~a~iGavGYgYmw-WKGw--sfSDlMfVTKRnMsnAv~svtK 130 (322)
.+=.++|+++|.+. ...+.|+=.++.|+.+. .+. -+++|+.|.-|+| |+|- -|..-|-+|.+..+|-.++.+.
T Consensus 133 d~sA~~i~~~l~~~~g~~v~ViI~Dt~gr~~r-~G~~~vaig~~Gi~~~~d~~G~~d~~g~~L~~T~~~~aD~la~aa~ 210 (228)
T PF01996_consen 133 DASARRIREELKERTGKDVGVIITDTNGRPWR-LGQTGVAIGVAGIKPLRDYRGEKDLFGRELKVTPRAVADELASAAD 210 (228)
T ss_dssp HHHHHHHHHHHHHHHS---EEEEEEEEEETTE-ECEEEEEEEEESB-SEEE-TT-B-TTS-B-S--EEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCceEEEEECCCCcEEe-cCCccchhhccCCccccccCCCchhhhChhccCchhhhhHHHHHhh
Confidence 34578889999988 66666665553243332 233 4688999998988 7676 3666688999999998887664
No 302
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=43.26 E-value=2.7e+02 Score=25.61 Aligned_cols=89 Identities=10% Similarity=0.145 Sum_probs=50.1
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhc--chhh--hhhHHHHHHHHH
Q 020751 117 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG--RSKL--IGDEFQSVRDIV 192 (322)
Q Consensus 117 TKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~--dls~--ig~Dv~~v~~~V 192 (322)
-|......++.+.+++++....+.. |..+|..+..++++.+.-...+.-.+..++. .+.. -+.|+.+-...+
T Consensus 93 ~k~~~~~~~~~l~~~~~~~~~~v~~----l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~f 168 (219)
T TIGR02977 93 EKQKAQELAEALERELAAVEETLAK----LQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARF 168 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHH
Confidence 5666667777777777766655554 4455556666666655443322222211111 1111 135666777777
Q ss_pred HHHHHHHHHhhhhhhHH
Q 020751 193 QTLESKLIEIEGKQDIT 209 (322)
Q Consensus 193 ~~Le~Ki~~iE~kQd~T 209 (322)
.-+|.|+.++|..-+..
T Consensus 169 er~e~ki~~~ea~aea~ 185 (219)
T TIGR02977 169 EQYERRVDELEAQAESY 185 (219)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 77888888888765543
No 303
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=43.25 E-value=4e+02 Score=28.25 Aligned_cols=31 Identities=16% Similarity=0.060 Sum_probs=20.9
Q ss_pred CCCCC--CCCCCCCCCCCCCCCCCccchhhccc
Q 020751 257 SLHPL--PLEPPSPSXXXXXXXIPMDLIRLTGR 287 (322)
Q Consensus 257 slpp~--~~e~~sps~~~~~~~~~~~~~~~~~~ 287 (322)
.|+.- =..-.+-.+..|....||-+|+|-|.
T Consensus 218 GL~~~~~y~~Q~~~~~~~g~~~rPDviV~LP~~ 250 (475)
T PRK10361 218 GLREGYEYETQVSIENDARSRMQPDVIVRLPQG 250 (475)
T ss_pred CCCcCCcceeeeeccCCCCCeeCCeEEEECCCC
Confidence 34544 23334556667878899999999875
No 304
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=43.18 E-value=7.9 Score=33.25 Aligned_cols=66 Identities=9% Similarity=0.051 Sum_probs=0.0
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHH
Q 020751 147 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLG 212 (322)
Q Consensus 147 sqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~G 212 (322)
..+++.+..++++..+-...+..+|.+...+++++...+..+...|..|+..+..+..++..-..-
T Consensus 16 ~~~~~~i~~~l~~~~~~~~~~~~~v~~t~~~~~~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~ 81 (138)
T PF06009_consen 16 LDRLDPISENLENWSENLGEINSDVEETNQDISDANKALDDANNSVKNLEQLAPDLLDKLKPLENL 81 (138)
T ss_dssp ------------------------------------------------------------------
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566667777777777888888888888888888888888888888888888888876544333
No 305
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=43.18 E-value=1.9e+02 Score=27.35 Aligned_cols=21 Identities=10% Similarity=0.159 Sum_probs=12.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q 020751 151 TSVDRDVNKIVEISQATQEEV 171 (322)
Q Consensus 151 d~vD~klDeq~eis~~i~~eV 171 (322)
+.+.+-++..+++...|++++
T Consensus 6 ~~~~d~~~~l~~v~~~iK~~~ 26 (205)
T PF12238_consen 6 DSSKDALKALKKVLDLIKENP 26 (205)
T ss_pred hhhHHHHHHHHHHHHHHccCC
Confidence 344555666666666666653
No 306
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=43.16 E-value=19 Score=34.62 Aligned_cols=73 Identities=19% Similarity=0.298 Sum_probs=53.0
Q ss_pred HHHHHHHHHHhcC-CCceEEEeCCCCCCCCchHHHHHHHhhhheeeEE-eccCC--cCchhhhhhhhHHHHHHHHHH
Q 020751 58 AEVSSVQQELSHV-PRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVW-WKGWK--LPDMMFATRRSLSDACNSVAR 130 (322)
Q Consensus 58 aQV~~LaqElr~L-sR~ITVvn~~ssg~gg~~y~l~a~iGavGYgYmw-WKGws--fSDlMfVTKRnMsnAv~svtK 130 (322)
+--++|+++|++. ...+.|+-++|-|..++....-++||+.|..=+| |+|-+ |.--|.||..+.+|-.++.+.
T Consensus 127 ~SA~~ir~~l~~~~g~~v~VIItDt~gr~~R~G~t~vAIG~aGi~~l~d~rG~~D~~G~~L~vT~~avaDelAaaA~ 203 (245)
T PRK13293 127 ESAERIREGLEELTGKKVGVIITDTNGRPFRKGQRGVAIGVAGIPALWDWRGEKDLFGRELETTEVAVADELAAAAN 203 (245)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEcCCCcccccCCcceeeeccCchHHHhhcCCcCCCCCeeechHHHHHHHHHHHHH
Confidence 4457889999998 7778887777656666555555688888877776 77762 444689999998887766543
No 307
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=43.10 E-value=2.4e+02 Score=31.94 Aligned_cols=70 Identities=11% Similarity=0.118 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhh------hhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHH
Q 020751 121 LSDACNSVARQLEDVYSSISAAQRQLSSKITSV------DRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD 190 (322)
Q Consensus 121 MsnAv~svtKqLeqVs~sLaaaKrhLsqRId~v------D~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~ 190 (322)
+...+......+.++...+...++++...+... ...+++..+.....+.+..+.+..+..+...+.....
T Consensus 782 l~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 857 (1047)
T PRK10246 782 LEQLKQNLENQRQQAQTLVTQTAQALAQHQQHRPDGLDLTVTVEQIQQELAQLAQQLRENTTRQGEIRQQLKQDAD 857 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555422222 1234444444444444444444444444444333333
No 308
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=42.97 E-value=1.8e+02 Score=23.46 Aligned_cols=73 Identities=14% Similarity=0.186 Sum_probs=41.0
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhh---hhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 020751 146 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI---GDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 218 (322)
Q Consensus 146 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~i---g~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~ 218 (322)
.-.+|-.+|.+.-+...-....+.+-+.+...+... |.|.+.+..-+..|-.+|..+|....-...-+..+|.
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~ 102 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLL 102 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555554444444444444444444443333 2467777777777777777777777666666666653
No 309
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=42.39 E-value=2.7e+02 Score=25.41 Aligned_cols=22 Identities=18% Similarity=0.222 Sum_probs=12.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 020751 180 LIGDEFQSVRDIVQTLESKLIE 201 (322)
Q Consensus 180 ~ig~Dv~~v~~~V~~Le~Ki~~ 201 (322)
...++++.++..-..|..+|.+
T Consensus 167 ~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 167 KHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 3445566666666666555544
No 310
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=42.14 E-value=1.9e+02 Score=28.35 Aligned_cols=76 Identities=11% Similarity=0.196 Sum_probs=47.9
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHH
Q 020751 125 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 201 (322)
Q Consensus 125 v~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ 201 (322)
++.++..=-.+|+.|..--..=..|-..+. +--++.++-+.+++-+..++..++++...+.++..=...||.||..
T Consensus 126 aseit~~GA~LydlL~kE~~lr~~R~~a~~-r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIek 201 (267)
T PF10234_consen 126 ASEITQRGASLYDLLGKEVELREERQRALA-RPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEK 201 (267)
T ss_pred HHHHHHHHHHHHHHHhchHhHHHHHHHHHc-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445555433222222333333 3334566888888888888888888888888888888888888863
No 311
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=42.10 E-value=3.8e+02 Score=31.07 Aligned_cols=23 Identities=13% Similarity=0.258 Sum_probs=10.7
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHH
Q 020751 146 LSSKITSVDRDVNKIVEISQATQ 168 (322)
Q Consensus 146 LsqRId~vD~klDeq~eis~~i~ 168 (322)
+..+++.+...+++...+.+.|+
T Consensus 939 ~~~~~~~~~~~~~~~~~~~~~i~ 961 (1311)
T TIGR00606 939 AQDKVNDIKEKVKNIHGYMKDIE 961 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444
No 312
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.07 E-value=1e+02 Score=30.76 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=16.1
Q ss_pred eccccCcccccccCCCCCCCCCCCCCCCC
Q 020751 233 QASRYTLSRTTLELPGITPSSRSGSLHPL 261 (322)
Q Consensus 233 Q~~~s~s~~~ale~~~~~p~sr~~slpp~ 261 (322)
++..+.+++|.-..+-++|..-+.-.+|.
T Consensus 201 ~~p~~~p~ip~wqi~~~sp~~~~~~~~~~ 229 (300)
T KOG2629|consen 201 VAPSSAPSIPSWQIQAESPHHSSNRMTST 229 (300)
T ss_pred CCcccCCCCchhhhccccchhhhccCCCC
Confidence 44445666776666666665444444454
No 313
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=42.04 E-value=1.5e+02 Score=25.81 Aligned_cols=46 Identities=20% Similarity=0.089 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020751 161 VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 206 (322)
Q Consensus 161 ~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQ 206 (322)
.+-....++|+......++.....+++++.-+..++..+.+.+.+-
T Consensus 40 ~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~~ 85 (160)
T PF13094_consen 40 LHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKKA 85 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3333444445555555555556667777777777777777766653
No 314
>PRK01919 tatB sec-independent translocase; Provisional
Probab=42.02 E-value=1.7e+02 Score=26.99 Aligned_cols=32 Identities=13% Similarity=0.196 Sum_probs=25.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhH
Q 020751 119 RSLSDACNSVARQLEDVYSSISAAQRQLSSKI 150 (322)
Q Consensus 119 RnMsnAv~svtKqLeqVs~sLaaaKrhLsqRI 150 (322)
..|-.+...+++-+.++-..+...|.++..-+
T Consensus 23 ekLP~~aRtlGk~i~k~Rr~~~d~K~ev~~E~ 54 (169)
T PRK01919 23 ERLPRVARTAGALFGRAQRYINDVKAEVSREI 54 (169)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888889888888888888888776554
No 315
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=41.99 E-value=2.6e+02 Score=28.28 Aligned_cols=15 Identities=13% Similarity=0.109 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhcC
Q 020751 56 LLAEVSSVQQELSHV 70 (322)
Q Consensus 56 L~aQV~~LaqElr~L 70 (322)
+.+++.+|.-|++.+
T Consensus 109 ~~~~~~rL~a~~~~~ 123 (457)
T TIGR01000 109 LKDQKKSLDTLKQSI 123 (457)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666554
No 316
>PLN02320 seryl-tRNA synthetase
Probab=41.98 E-value=1.5e+02 Score=31.45 Aligned_cols=92 Identities=14% Similarity=0.259 Sum_probs=47.9
Q ss_pred eccCCcCchhhhhhhhHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchh
Q 020751 105 WKGWKLPDMMFATRRSLSDACNSVARQ-----LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 179 (322)
Q Consensus 105 WKGwsfSDlMfVTKRnMsnAv~svtKq-----LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls 179 (322)
||-. -|+=|. |.|-.....++.+- +|++- .+-..+|.+..+++.+. .+.++++++|+.. .-..+.+
T Consensus 63 ~~~m--lD~k~i-r~n~~~v~~~l~~R~~~~~vd~l~-~ld~~~r~~~~~~~~lr---~ern~~sk~i~~~--~~~~~~~ 133 (502)
T PLN02320 63 WKAA--IDFKWI-RDNKEAVAINIRNRNSNANLELVL-ELYENMLALQKEVERLR---AERNAVANKMKGK--LEPSERQ 133 (502)
T ss_pred cccc--cCHHHH-HhCHHHHHHHHHhcCCCcCHHHHH-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHhh--hCCCCHH
Confidence 6654 565554 44555544444432 34432 23444556666665554 4566677777652 2224445
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020751 180 LIGDEFQSVRDIVQTLESKLIEIEGK 205 (322)
Q Consensus 180 ~ig~Dv~~v~~~V~~Le~Ki~~iE~k 205 (322)
.+..++..+++-+..||.++..++.+
T Consensus 134 ~l~~~~k~lk~~i~~le~~~~~~~~~ 159 (502)
T PLN02320 134 ALVEEGKNLKEGLVTLEEDLVKLTDE 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555543
No 317
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=41.43 E-value=2.7e+02 Score=28.20 Aligned_cols=30 Identities=20% Similarity=0.275 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020751 119 RSLSDACNSVARQLEDVYSSISAAQRQLSS 148 (322)
Q Consensus 119 RnMsnAv~svtKqLeqVs~sLaaaKrhLsq 148 (322)
.+++...+++=..|.+=++--..|.+|..+
T Consensus 202 ~~le~ema~lL~sLt~HfDqC~~a~~~~eg 231 (412)
T PF04108_consen 202 HSLEQEMASLLESLTNHFDQCVTAVRHTEG 231 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455555555555555555555555555544
No 318
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=41.35 E-value=3.4e+02 Score=26.24 Aligned_cols=92 Identities=10% Similarity=0.138 Sum_probs=60.7
Q ss_pred chhhhhhhhHHHHHHHHHHhHHHHHHHHHH-HHHHHHHhHhhhhhhHHHHHHHHHHHHHHH------------HHhhcch
Q 020751 112 DMMFATRRSLSDACNSVARQLEDVYSSISA-AQRQLSSKITSVDRDVNKIVEISQATQEEV------------TILRGRS 178 (322)
Q Consensus 112 DlMfVTKRnMsnAv~svtKqLeqVs~sLaa-aKrhLsqRId~vD~klDeq~eis~~i~~eV------------~~v~~dl 178 (322)
.+|+..=.+..+.+..+.++++++.+.+-. .+++.-.||-.+.+.+=.........++-+ .+.+.-+
T Consensus 143 ~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l 222 (322)
T COG0598 143 ALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTNEELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYL 222 (322)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHH
Confidence 366677788999999999999999976655 445577777777776655444444333322 2334445
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhh
Q 020751 179 KLIGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 179 s~ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
..+.+|+.++..++..+..++..+-
T Consensus 223 ~dv~~~~~~~~~~~~~~~~~l~~l~ 247 (322)
T COG0598 223 RDVLDHLTQLIEMLEALRERLSSLL 247 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667777777777777776554
No 319
>PRK09039 hypothetical protein; Validated
Probab=41.26 E-value=3.7e+02 Score=26.69 Aligned_cols=24 Identities=25% Similarity=0.540 Sum_probs=14.0
Q ss_pred chhhcccccccccccccchhhcccc
Q 020751 281 LIRLTGRIVSRPLASRSSMELQNWG 305 (322)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (322)
.|++.|.-=.+|+....+ .-.||-
T Consensus 264 ~I~I~GHTD~~p~~~~g~-~~~N~~ 287 (343)
T PRK09039 264 VLRVDGHTDNVPLSGTGR-FRDNWE 287 (343)
T ss_pred eEEEEEecCCCCccCCCC-cccHHH
Confidence 377788777777654322 234663
No 320
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=41.23 E-value=2.1e+02 Score=31.18 Aligned_cols=81 Identities=16% Similarity=0.223 Sum_probs=62.9
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHh
Q 020751 143 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARE 222 (322)
Q Consensus 143 KrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~f~~~ 222 (322)
|+.|.+.|++|...+.++..-.+.+..|+......++++-+++.+.++----|+..=...+..+..-.+=...|+.+++.
T Consensus 81 r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~ 160 (632)
T PF14817_consen 81 RRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVEQ 160 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999988888899989999988877777766666665555555555555555553
Q ss_pred h
Q 020751 223 L 223 (322)
Q Consensus 223 ~ 223 (322)
+
T Consensus 161 ~ 161 (632)
T PF14817_consen 161 L 161 (632)
T ss_pred H
Confidence 3
No 321
>PHA03395 p10 fibrous body protein; Provisional
Probab=41.21 E-value=78 Score=26.42 Aligned_cols=8 Identities=25% Similarity=0.455 Sum_probs=3.3
Q ss_pred hhhhhhHH
Q 020751 151 TSVDRDVN 158 (322)
Q Consensus 151 d~vD~klD 158 (322)
..||+|+|
T Consensus 14 kavd~KVd 21 (87)
T PHA03395 14 KAVSDKVD 21 (87)
T ss_pred HHHhhHHH
Confidence 33444443
No 322
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=41.11 E-value=1.9e+02 Score=26.11 Aligned_cols=15 Identities=13% Similarity=0.348 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhcC
Q 020751 56 LLAEVSSVQQELSHV 70 (322)
Q Consensus 56 L~aQV~~LaqElr~L 70 (322)
|-..|+.+.++|..+
T Consensus 28 l~q~ird~e~~l~~a 42 (221)
T PF04012_consen 28 LEQAIRDMEEQLRKA 42 (221)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556677777777666
No 323
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=41.06 E-value=1.4e+02 Score=35.32 Aligned_cols=68 Identities=15% Similarity=0.243 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020751 132 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 132 LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
++|+..+++..||. |+.+..+|-+..+-...|.+++.-...||+.+..|+..|..++..|+.+++.|.
T Consensus 1227 i~~l~~~~~~lr~~----l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1227 IAQLASATESLRRQ----LQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHHHHHHHHHHHHH----HHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555544444 334445555555555566677777777888888888888888888888887664
No 324
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=40.78 E-value=2.9e+02 Score=26.81 Aligned_cols=85 Identities=11% Similarity=0.206 Sum_probs=51.3
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH---h--HhhhhhhHHHHHHHHHHHHHHHHHhhcchhhh-------hhH
Q 020751 117 TRRSLSDACNSVARQLEDVYSSISAAQRQLSS---K--ITSVDRDVNKIVEISQATQEEVTILRGRSKLI-------GDE 184 (322)
Q Consensus 117 TKRnMsnAv~svtKqLeqVs~sLaaaKrhLsq---R--Id~vD~klDeq~eis~~i~~eV~~v~~dls~i-------g~D 184 (322)
.++.-.+|+.-+.+||+.....|..+.+.|.. + +-.++.......+....++.+..+++..+... .-+
T Consensus 164 ~~~~~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~ 243 (362)
T TIGR01010 164 NERARKDTIAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQ 243 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCc
Confidence 44556789999999999999999999877754 1 11122333334445555555555555555443 234
Q ss_pred HHHHHHHHHHHHHHHHH
Q 020751 185 FQSVRDIVQTLESKLIE 201 (322)
Q Consensus 185 v~~v~~~V~~Le~Ki~~ 201 (322)
+..++.-+..|+.+|..
T Consensus 244 v~~l~~~i~~l~~~i~~ 260 (362)
T TIGR01010 244 VPSLQARIKSLRKQIDE 260 (362)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 55555555555555554
No 325
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=40.73 E-value=2.1e+02 Score=24.37 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=23.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 020751 122 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQE 169 (322)
Q Consensus 122 snAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~ 169 (322)
.+..-+++..|..+...|..-.+||..-|-.=-..|-.+..-.+..++
T Consensus 25 ~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~ 72 (132)
T PF10392_consen 25 SDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELES 72 (132)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHH
Confidence 334445566666666666665555555544433333333333333333
No 326
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=40.65 E-value=18 Score=28.98 Aligned_cols=44 Identities=14% Similarity=0.345 Sum_probs=31.6
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 020751 113 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 159 (322)
Q Consensus 113 lMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDe 159 (322)
+=|.||+..+. .++.+-++--+.|.+.-+.|.+||+.|.+=||+
T Consensus 24 lHY~~k~~~~~---~ls~~d~~~L~~L~~~a~rm~eRI~tLE~ILd~ 67 (75)
T TIGR02976 24 LHYRSKRKTAA---SLSTDDQALLQELYAKADRLEERIDTLERILDA 67 (75)
T ss_pred HHHHhhhccCC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45788877664 355555566666777778899999999887764
No 327
>PF05549 Allexi_40kDa: Allexivirus 40kDa protein; InterPro: IPR008398 This family of sequences contains the 40 kDa polypeptides from garlic viruses (Allexiviruses), which do not resemble any other plant virus gene products reported so far []. Rod-shaped flexuous viruses have been isolated from garlic plants, Allium sativum. Infection by this virus creates typical mosaic symptoms. The core-like sequence of a zinc finger protein preceded by a cluster of basic amino acid residues shows similarities to the corresponding 12K proteins of the potexviruses and carlaviruses []. Viral epidemics by allexiviruses are also known to be caused by aphids and eriophyid mites (Aceria tulipae) carrying Potyviruses, Carlaviruses, and Allexiviruses [].
Probab=40.54 E-value=2.8e+02 Score=27.48 Aligned_cols=34 Identities=32% Similarity=0.599 Sum_probs=19.0
Q ss_pred CCCCC-CCCCCCCCCCCC-------CCCCCccchhhccccccccc
Q 020751 257 SLHPL-PLEPPSPSXXXX-------XXXIPMDLIRLTGRIVSRPL 293 (322)
Q Consensus 257 slpp~-~~e~~sps~~~~-------~~~~~~~~~~~~~~~~~~~~ 293 (322)
+|||- +.-|..+--+=| +..||||. +||-.|--|
T Consensus 165 ~LP~yqa~HPt~rCRtYGti~fnG~~l~iPMDi---~GRpaSTaL 206 (271)
T PF05549_consen 165 DLPPYQAVHPTARCRTYGTIEFNGSSLRIPMDI---RGRPASTAL 206 (271)
T ss_pred CCCcccccCCCcccccceeEEECCEeeeccccc---cCCCCcceE
Confidence 37776 444444433322 35799996 477666544
No 328
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=40.51 E-value=1e+02 Score=32.30 Aligned_cols=29 Identities=14% Similarity=0.101 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHHhH
Q 020751 183 DEFQSVRDIVQTLESKLIEIEGKQDITTL 211 (322)
Q Consensus 183 ~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~ 211 (322)
.|+..+-.+|..|+.+|++.-++-|.-..
T Consensus 317 ~~l~~le~~~~~mgPlid~~Le~idrk~~ 345 (462)
T KOG2199|consen 317 DDLLDLEAAVHQMGPLIDRKLEKIDRKHE 345 (462)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 45666666666666666666555444333
No 329
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=40.34 E-value=1.8e+02 Score=29.23 Aligned_cols=22 Identities=14% Similarity=0.312 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh
Q 020751 182 GDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 182 g~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
++||+.+|+.+..||.++.+++
T Consensus 288 RsElDe~~krL~ELrR~vr~L~ 309 (320)
T TIGR01834 288 RSELDEAHQRIQQLRREVKSLK 309 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666654
No 330
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=40.33 E-value=3.8e+02 Score=27.63 Aligned_cols=81 Identities=9% Similarity=0.217 Sum_probs=44.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHH-----------HHHHHHHHHHHHHhhcchhhhhhH-------
Q 020751 123 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI-----------VEISQATQEEVTILRGRSKLIGDE------- 184 (322)
Q Consensus 123 nAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq-----------~eis~~i~~eV~~v~~dls~ig~D------- 184 (322)
+.+..+-+...++.+++.+-|.++...+.-+-..|.|- ++..+.=++|+..++.+|..+.+-
T Consensus 219 ~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~e 298 (395)
T PF10267_consen 219 EELREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYE 298 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 33555556666666666666665554443333333322 233444455666666666444432
Q ss_pred -HHHHHHHHHHHHHHHHHhh
Q 020751 185 -FQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 185 -v~~v~~~V~~Le~Ki~~iE 203 (322)
...|++.++..-.||..||
T Consensus 299 RaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 299 RARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 3346667777777888888
No 331
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=40.32 E-value=33 Score=30.64 Aligned_cols=62 Identities=15% Similarity=0.256 Sum_probs=36.9
Q ss_pred HHhhhheeeEEeccCCcCchh------hhhhhhHHHHHHHHHHhHHHHHHHHHHHHH---HHHHhHhhhhhhH
Q 020751 94 VIVAVGYGYVWWKGWKLPDMM------FATRRSLSDACNSVARQLEDVYSSISAAQR---QLSSKITSVDRDV 157 (322)
Q Consensus 94 ~iGavGYgYmwWKGwsfSDlM------fVTKRnMsnAv~svtKqLeqVs~sLaaaKr---hLsqRId~vD~kl 157 (322)
=+|+=.|.|.--++- .+++ |.-.++..+|.+.+-|..+....++..... .|++|++.+...+
T Consensus 61 pvGag~fv~~kv~~~--~kviV~iGsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~ 131 (145)
T COG1730 61 PVGAGLFVKAKVKDM--DKVIVSIGSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEA 131 (145)
T ss_pred EcCCCceEEEEeccC--ceEEEEcCCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555543 2222 455789999999999999887766554332 3444444444443
No 332
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=40.29 E-value=1.4e+02 Score=28.23 Aligned_cols=59 Identities=19% Similarity=0.330 Sum_probs=39.0
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhc--chhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020751 146 LSSKITSVDRDVNKIVEISQATQEEVTILRG--RSKLIGDEFQSVRDIVQTLESKLIEIEG 204 (322)
Q Consensus 146 LsqRId~vD~klDeq~eis~~i~~eV~~v~~--dls~ig~Dv~~v~~~V~~Le~Ki~~iE~ 204 (322)
|-..|.++..|+...+.....+..|+.++.. .+++++.++++++..|.+.+.||..+-+
T Consensus 84 ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~ 144 (201)
T KOG4603|consen 84 LDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKA 144 (201)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666655555555555555555554 3467888888888888888888887754
No 333
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=40.08 E-value=3.8e+02 Score=26.45 Aligned_cols=80 Identities=18% Similarity=0.309 Sum_probs=58.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHH------HHHH
Q 020751 122 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI------VQTL 195 (322)
Q Consensus 122 snAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~------V~~L 195 (322)
.+++.+|+-.|--+...+..+-.++.++++..-..|-.. ..+.+.|...|..=..+.++|..++.. +..|
T Consensus 95 dddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~I----R~~E~sl~p~R~~r~~l~d~I~kLk~k~P~s~kl~~L 170 (271)
T PF13805_consen 95 DDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKSI----RNREESLQPSRDRRRKLQDEIAKLKYKDPQSPKLVVL 170 (271)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTTTHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHhHHHHHHHHHHHhcCCCChHHHHH
Confidence 678889999999999999999999988877666655443 334455666777777777888877754 6677
Q ss_pred HHHHHHhhhh
Q 020751 196 ESKLIEIEGK 205 (322)
Q Consensus 196 e~Ki~~iE~k 205 (322)
|..|.+.|..
T Consensus 171 eqELvraEae 180 (271)
T PF13805_consen 171 EQELVRAEAE 180 (271)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776644
No 334
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=40.02 E-value=1.6e+02 Score=31.74 Aligned_cols=99 Identities=17% Similarity=0.256 Sum_probs=74.4
Q ss_pred EeccCCcCch--hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHH--------------
Q 020751 104 WWKGWKLPDM--MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQAT-------------- 167 (322)
Q Consensus 104 wWKGwsfSDl--MfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i-------------- 167 (322)
.=+|+|.+|| |-.-|--|..-.+-++-+-+.+-.++-+++.+...+++.|.+++.+-+-+...|
T Consensus 361 ~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~~~~nd~ 440 (622)
T COG5185 361 RKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDS 440 (622)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhcCCCC
Confidence 4578888885 888888899999999999999999999999999999999998887755433221
Q ss_pred -------------------------------HHHHH-------HhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751 168 -------------------------------QEEVT-------ILRGRSKLIGDEFQSVRDIVQTLESKLIEI 202 (322)
Q Consensus 168 -------------------------------~~eV~-------~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 202 (322)
+.+++ .+.+++.+...|+..+++..+++|.+|.+.
T Consensus 441 ~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~~~~~i~El~~~l~~~e~~L~~a 513 (622)
T COG5185 441 SLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKNLKHDINELTQILEKLELELSEA 513 (622)
T ss_pred ceeeccccCCccccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHHHhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 11222 145666667777777777777777777654
No 335
>PLN03223 Polycystin cation channel protein; Provisional
Probab=39.94 E-value=1.5e+02 Score=35.51 Aligned_cols=91 Identities=25% Similarity=0.363 Sum_probs=59.6
Q ss_pred hhhhHH--HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHH
Q 020751 117 TRRSLS--DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 194 (322)
Q Consensus 117 TKRnMs--nAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~ 194 (322)
.||.|. ||-+.++.-|+||. .|+-++..|...|+.|.-++|-++.+.+.=..+=+ - ..-|..-...|+.-=..
T Consensus 767 ~~r~l~~~~~~~~l~~~~~~v~-~~~t~q~~~~~~~~~~~~~~~~~~~~a~~~~~d~~--~--~~~i~~g~~d~~~~~~~ 841 (1634)
T PLN03223 767 NRRRLQQTNAAATLTNILTQVG-TLSTTQTSLDTQIETLKTQQDRANQEAEAHHADNS--L--ETLINAGFTDIKAGQAA 841 (1634)
T ss_pred hhhhhhhcchHHHHHHHHHHhh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcccch--H--HHHHHhchhHHHhHHHH
Confidence 366665 67777777777775 47788888999999888888777666554333210 0 11222223445555567
Q ss_pred HHHHHHHhhhhhhHHhHH
Q 020751 195 LESKLIEIEGKQDITTLG 212 (322)
Q Consensus 195 Le~Ki~~iE~kQd~Tn~G 212 (322)
||.||++|-+||+.+...
T Consensus 842 ~~~~~~~il~kq~~al~~ 859 (1634)
T PLN03223 842 LEAKLDEILGKQQQALAA 859 (1634)
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 889999999998876543
No 336
>COG1463 Ttg2C ABC-type transport system involved in resistance to organic solvents, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=39.82 E-value=2e+02 Score=28.33 Aligned_cols=13 Identities=15% Similarity=-0.000 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHh
Q 020751 210 TLGVKKLCDRARE 222 (322)
Q Consensus 210 n~GV~~LC~f~~~ 222 (322)
+..+..||.+..-
T Consensus 267 ~~~l~~l~~~~~~ 279 (359)
T COG1463 267 NQALANLRPLATL 279 (359)
T ss_pred HHHHHHHHHHHHH
Confidence 3344445554443
No 337
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=39.66 E-value=5.4e+02 Score=31.94 Aligned_cols=48 Identities=17% Similarity=0.351 Sum_probs=22.7
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHH---HHHHHHhHhhhhhhHHHHHHHH
Q 020751 117 TRRSLSDACNSVARQLEDVYSSISAA---QRQLSSKITSVDRDVNKIVEIS 164 (322)
Q Consensus 117 TKRnMsnAv~svtKqLeqVs~sLaaa---KrhLsqRId~vD~klDeq~eis 164 (322)
.+|.+.+-|..+.++++.+-..+... |.++..+|.++.+.+..+.+..
T Consensus 930 ~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~~ 980 (1930)
T KOG0161|consen 930 KKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDENI 980 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444333 2233444444444444444433
No 338
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=39.59 E-value=4.6e+02 Score=27.29 Aligned_cols=66 Identities=8% Similarity=0.204 Sum_probs=42.3
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhh-hhHHHHHHHHHHHHHHHHHhhcchhh
Q 020751 115 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVD-RDVNKIVEISQATQEEVTILRGRSKL 180 (322)
Q Consensus 115 fVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD-~klDeq~eis~~i~~eV~~v~~dls~ 180 (322)
=--|+.|++-+..+-+.+|.+.+.+...|+...+|==+.. .+|+.+..-......++.+++.-+..
T Consensus 205 ~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~ 271 (424)
T PF03915_consen 205 ESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKT 271 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999999988733332 22333333334444444444444433
No 339
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=39.53 E-value=3e+02 Score=30.73 Aligned_cols=83 Identities=18% Similarity=0.275 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH---HHHhHhhhhhhHHHHHH-------HHHHHHHHHHHhhcchhhhhhHHHHHHH
Q 020751 121 LSDACNSVARQLEDVYSSISAAQRQ---LSSKITSVDRDVNKIVE-------ISQATQEEVTILRGRSKLIGDEFQSVRD 190 (322)
Q Consensus 121 MsnAv~svtKqLeqVs~sLaaaKrh---LsqRId~vD~klDeq~e-------is~~i~~eV~~v~~dls~ig~Dv~~v~~ 190 (322)
+.+.-..+-.|++-+-++|.+...| |..=++.+--+||+-.. ....+++|.+..+..++.+.+-++.-..
T Consensus 313 ~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ 392 (775)
T PF10174_consen 313 LEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKER 392 (775)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566678888888888877654 44445555555554444 4444444544444444444444444443
Q ss_pred HHHHHHHHHHHhh
Q 020751 191 IVQTLESKLIEIE 203 (322)
Q Consensus 191 ~V~~Le~Ki~~iE 203 (322)
-|..|-.||+.++
T Consensus 393 ki~~Lq~kie~Le 405 (775)
T PF10174_consen 393 KINVLQKKIENLE 405 (775)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444333
No 340
>cd00024 CHROMO Chromatin organization modifier (chromo) domain is a conserved region of around 50 amino acids found in a variety of chromosomal proteins, which appear to play a role in the functional organization of the eukaryotic nucleus. Experimental evidence implicates the chromo domain in the binding activity of these proteins to methylated histone tails and maybe RNA. May occur as single instance, in a tandem arrangement or followd by a related "chromo shadow" domain.
Probab=39.45 E-value=30 Score=24.00 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.0
Q ss_pred eeeEEeccCCcCchhhhhhhhHHHH
Q 020751 100 YGYVWWKGWKLPDMMFATRRSLSDA 124 (322)
Q Consensus 100 YgYmwWKGwsfSDlMfVTKRnMsnA 124 (322)
.-++.|+|++-.|-.+++..+|.++
T Consensus 21 ~y~VkW~g~~~~~~tWe~~~~l~~~ 45 (55)
T cd00024 21 EYLVKWKGYSYSEDTWEPEENLEDC 45 (55)
T ss_pred EEEEEECCCCCccCccccHHHhCch
Confidence 3478999999999999999999876
No 341
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.35 E-value=2.3e+02 Score=28.45 Aligned_cols=102 Identities=18% Similarity=0.202 Sum_probs=71.4
Q ss_pred hhhHH-HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH--------------------------------HHH
Q 020751 118 RRSLS-DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV--------------------------------EIS 164 (322)
Q Consensus 118 KRnMs-nAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~--------------------------------eis 164 (322)
++++. ||...++.+|.+.+...+...-..-.||.+-+.+-.+-. +..
T Consensus 134 e~~~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~~~~~~qe~ql~~~e~~~~~~ 213 (305)
T KOG0809|consen 134 ERLLRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYEDSLDNTVDLPDDEDFSDRTFQEQQLMLFENNEEVV 213 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhhhccccccCcchhhhhhhhHHHHHHHHHhcchHHH
Confidence 45565 788889999999999999988777777766544322211 222
Q ss_pred HHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHh----HHHHHHHHH
Q 020751 165 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITT----LGVKKLCDR 219 (322)
Q Consensus 165 ~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn----~GV~~LC~f 219 (322)
..=.+||+.+..-+.....-++.+..+|-.=+.=||+|.+|-+-|+ .|..-|-.+
T Consensus 214 ~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KA 272 (305)
T KOG0809|consen 214 REREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKA 272 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHH
Confidence 2333567778777777777788888888888888999988855554 566666543
No 342
>PRK01156 chromosome segregation protein; Provisional
Probab=39.17 E-value=3.2e+02 Score=29.81 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhh
Q 020751 131 QLEDVYSSISAAQRQLSSKITSVDR 155 (322)
Q Consensus 131 qLeqVs~sLaaaKrhLsqRId~vD~ 155 (322)
.+++.++.+..+.+.+..+|..++.
T Consensus 163 ~~~~~~~~~~~~~~~~~~ei~~le~ 187 (895)
T PRK01156 163 SLERNYDKLKDVIDMLRAEISNIDY 187 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554443
No 343
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=39.15 E-value=3e+02 Score=27.63 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=33.2
Q ss_pred hhhHHHHHHHHHHHHHHH-------HHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751 154 DRDVNKIVEISQATQEEV-------TILRGRSKLIGDEFQSVRDIVQTLESKLIEI 202 (322)
Q Consensus 154 D~klDeq~eis~~i~~eV-------~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 202 (322)
|..+++.+-.-..+++|= -|++.-|+.-+.+|++++++|+++-..|..=
T Consensus 88 etEI~eLksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQvieTmrssL~ek 143 (305)
T PF15290_consen 88 ETEIDELKSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQVIETMRSSLAEK 143 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchh
Confidence 444444444444445441 2566778899999999999999988877643
No 344
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=39.14 E-value=1.3e+02 Score=28.43 Aligned_cols=77 Identities=16% Similarity=0.228 Sum_probs=37.7
Q ss_pred chhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHH-HHHHHHHhhcchhhhhhHHHHHHH
Q 020751 112 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQA-TQEEVTILRGRSKLIGDEFQSVRD 190 (322)
Q Consensus 112 DlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~-i~~eV~~v~~dls~ig~Dv~~v~~ 190 (322)
|-|-.+||.|+++...+++.|..+++.=. .-|+.-+..|.+..+...++-.. -.+|...+.+-|...-.++++++.
T Consensus 48 ~~lv~~rkela~~~~~fs~al~~L~~~E~---t~L~~~ls~lae~~ek~~~l~~r~A~~d~l~L~e~L~~Y~r~~~A~K~ 124 (219)
T cd07621 48 DKMTRKHKDVADSYIKISAALTQLATSEP---TPLDKFLLKVAETFEKLRKLEGRVASDEDLKLSDTLRYYMRDTQAAKD 124 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccc---chHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHH
Confidence 33445677777777777777766665422 13333333333333333333222 223444555555555555555554
Q ss_pred H
Q 020751 191 I 191 (322)
Q Consensus 191 ~ 191 (322)
+
T Consensus 125 ~ 125 (219)
T cd07621 125 L 125 (219)
T ss_pred H
Confidence 3
No 345
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=39.06 E-value=4.8e+02 Score=30.70 Aligned_cols=43 Identities=16% Similarity=0.129 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020751 164 SQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 206 (322)
Q Consensus 164 s~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQ 206 (322)
.++++.++.+++..+.....++.....-...++.++...+.+-
T Consensus 923 ~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~~~~a~~~~ 965 (1353)
T TIGR02680 923 VDEIRARLAETRAALASGGRELPRLAEALATAEEARGRAEEKR 965 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777777777777776666666666665554
No 346
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=39.05 E-value=3.1e+02 Score=27.87 Aligned_cols=87 Identities=15% Similarity=0.182 Sum_probs=51.5
Q ss_pred HHhhhheeeEEeccCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHH---HHHHHHHHHHH
Q 020751 94 VIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK---IVEISQATQEE 170 (322)
Q Consensus 94 ~iGavGYgYmwWKGwsfSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDe---q~eis~~i~~e 170 (322)
..+++|-|+ +---..+|=||.---++.||-..++.-=.+|++...+.+.-+.+.+++|+.-.++ -.+..+.+++.
T Consensus 73 c~aaigvG~--yGN~e~~~gv~~~~~s~~~~n~t~~~i~~~v~~~~~~l~~~v~~~l~~Le~~~~~~~~~~~~~~~~~~~ 150 (406)
T PF04906_consen 73 CCAAIGVGF--YGNSETNDGVYQLIYSLRNANHTLSGIDNLVSDTTEALNSTVEQHLTRLEEIFAKRTDLLQALQFLQQQ 150 (406)
T ss_pred HHHHHHccc--ccchhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 445666543 3334467778877777778777777555666666666666666666666665533 33444444555
Q ss_pred HHHhhcchhhhh
Q 020751 171 VTILRGRSKLIG 182 (322)
Q Consensus 171 V~~v~~dls~ig 182 (322)
++.+-..+..|.
T Consensus 151 ~~~v~~~l~~l~ 162 (406)
T PF04906_consen 151 AENVVQQLDELP 162 (406)
T ss_pred HHHHHHHHhcCc
Confidence 555544444443
No 347
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=38.88 E-value=5.2e+02 Score=27.73 Aligned_cols=129 Identities=12% Similarity=0.163 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHH----------HHHHhHhhhhhhHHH-HHHHHHHHHHHHHHhhcchhhhhhHHHHH
Q 020751 120 SLSDACNSVARQLEDVYSSISAAQR----------QLSSKITSVDRDVNK-IVEISQATQEEVTILRGRSKLIGDEFQSV 188 (322)
Q Consensus 120 nMsnAv~svtKqLeqVs~sLaaaKr----------hLsqRId~vD~klDe-q~eis~~i~~eV~~v~~dls~ig~Dv~~v 188 (322)
........+-.++.++...++.... .+..+|+.+..++++ ...+....+.+...++...+.+...++.+
T Consensus 285 ~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l~~~ 364 (754)
T TIGR01005 285 KLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDVNQL 364 (754)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHH---HHHHHHhhhhhhHHhHHHHHHHHHHHhhccCCCccceeccccCcccccccCCCCCCCCCCCCCCCC-CCC
Q 020751 189 RDIVQTL---ESKLIEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLSRTTLELPGITPSSRSGSLHPL-PLE 264 (322)
Q Consensus 189 ~~~V~~L---e~Ki~~iE~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~Q~~~s~s~~~ale~~~~~p~sr~~slpp~-~~e 264 (322)
+.-+..+ |.++.+++-..+.+..=...|-+-.++.+-..........-=. ||. |..
T Consensus 365 ~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~~~~~~~~~vi~--------------------~A~~P~~ 424 (754)
T TIGR01005 365 KAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQNYVPVDARVAS--------------------PASVPSE 424 (754)
T ss_pred HHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcEEec--------------------cCcCCCC
Q ss_pred CCCC
Q 020751 265 PPSP 268 (322)
Q Consensus 265 ~~sp 268 (322)
|.+|
T Consensus 425 P~~P 428 (754)
T TIGR01005 425 PYFP 428 (754)
T ss_pred CCCC
No 348
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=38.87 E-value=4.1e+02 Score=26.49 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=15.6
Q ss_pred HHHHhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 020751 170 EVTILRGRSKLIGDEFQSVRDIVQTLESKLI 200 (322)
Q Consensus 170 eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 200 (322)
++...+..++++..-...++.++.+++.+..
T Consensus 142 ~L~~~~~~l~q~~~k~~~~q~~l~~~~~~~~ 172 (301)
T PF06120_consen 142 ELAVAQERLEQMQSKASETQATLNDLTEQRI 172 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555554444
No 349
>PRK15396 murein lipoprotein; Provisional
Probab=38.84 E-value=92 Score=25.23 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=17.0
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhh
Q 020751 146 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 180 (322)
Q Consensus 146 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ 180 (322)
|+..++.|..|+|+...-...++.++..++++-.+
T Consensus 30 LssqV~~L~~kvdql~~dv~~~~~~~~~a~~eA~r 64 (78)
T PRK15396 30 LSSDVQTLNAKVDQLSNDVNAMRSDVQAAKDDAAR 64 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555555555555555555444443333
No 350
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=38.82 E-value=88 Score=31.96 Aligned_cols=90 Identities=12% Similarity=0.103 Sum_probs=60.6
Q ss_pred CCCCCc--hHHHHHHHhhhheeeEEeccCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 020751 82 SGTGAK--KYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 159 (322)
Q Consensus 82 sg~gg~--~y~l~a~iGavGYgYmwWKGwsfSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDe 159 (322)
.|...+ .+.+++++|+-||-|.+..--.. -.+...+.+-.+....+..+-...+...-+++..++..+..++.+
T Consensus 35 ~g~~l~~~aili~la~g~g~y~~~~qq~~~~----~~~~~~L~~ql~~~~~~~~~~~~~l~~~~~~~~~~l~~~e~~~~~ 110 (390)
T PRK10920 35 TGLVLSAVAIAIALAAGAGLYYHGKQQAQNQ----TATNDALANQLTALQKAQESQKQELEGILKQQAKALDQANRQQAA 110 (390)
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455433 68887799999999999877433 346666777777776666666666666666777777777666666
Q ss_pred HHHHHHHHHHHHHHhh
Q 020751 160 IVEISQATQEEVTILR 175 (322)
Q Consensus 160 q~eis~~i~~eV~~v~ 175 (322)
...-....+..+.++.
T Consensus 111 l~~q~~~Lq~~~~~ls 126 (390)
T PRK10920 111 LAKQLDELQQKVATIS 126 (390)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 6666666666665543
No 351
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=38.81 E-value=2.1e+02 Score=28.85 Aligned_cols=31 Identities=19% Similarity=0.280 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020751 118 RRSLSDACNSVARQLEDVYSSISAAQRQLSS 148 (322)
Q Consensus 118 KRnMsnAv~svtKqLeqVs~sLaaaKrhLsq 148 (322)
+.+..++..-+.++++++.+.|..+.+.|..
T Consensus 156 ~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~ 186 (498)
T TIGR03007 156 RQDSDSAQRFIDEQIKTYEKKLEAAENRLKA 186 (498)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888888888888888888877764
No 352
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=38.75 E-value=1.4e+02 Score=28.01 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=8.7
Q ss_pred HHHHHHHHhhcchhhhhhH
Q 020751 166 ATQEEVTILRGRSKLIGDE 184 (322)
Q Consensus 166 ~i~~eV~~v~~dls~ig~D 184 (322)
.++.+|+.++.|+.....-
T Consensus 111 ~~~~~v~~~~q~~~~l~~K 129 (189)
T TIGR02132 111 ALKKDVTKLKQDIKSLDKK 129 (189)
T ss_pred hHHhHHHHHHHHHHHHHHH
Confidence 4444455554444444433
No 353
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=38.58 E-value=3.2e+02 Score=25.19 Aligned_cols=15 Identities=7% Similarity=0.395 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHhcC
Q 020751 56 LLAEVSSVQQELSHV 70 (322)
Q Consensus 56 L~aQV~~LaqElr~L 70 (322)
++----.|+.+|+.+
T Consensus 48 lm~~f~~l~e~v~~l 62 (190)
T PF05266_consen 48 LMVTFANLAEKVKKL 62 (190)
T ss_pred HHHHHHHHHHHHHHc
Confidence 555666677777776
No 354
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=38.51 E-value=2.7e+02 Score=24.34 Aligned_cols=85 Identities=14% Similarity=0.302 Sum_probs=61.8
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcc--hhhhhhHHHH----HHHHH
Q 020751 119 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR--SKLIGDEFQS----VRDIV 192 (322)
Q Consensus 119 RnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~d--ls~ig~Dv~~----v~~~V 192 (322)
.++.+=.+++..+++++-..=.+-+....++-+..+..|+++.+....+.+....+..+ +.-++++.+. .....
T Consensus 23 ~~v~~~l~~LEae~q~L~~kE~~r~~~~k~~ae~a~~~L~~~~~~~~~i~e~~~kl~~~~~~r~yk~eYk~llk~y~~~~ 102 (126)
T PF09403_consen 23 ASVESELNQLEAEYQQLEQKEEARYNEEKQEAEAAEAELAELKELYAEIEEKIEKLKQDSKVRWYKDEYKELLKKYKDLL 102 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTTHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Confidence 56666677888888888777778888999999999999999999999999887776654 4444455444 34455
Q ss_pred HHHHHHHHHhh
Q 020751 193 QTLESKLIEIE 203 (322)
Q Consensus 193 ~~Le~Ki~~iE 203 (322)
..||.+|..-|
T Consensus 103 ~~L~k~I~~~e 113 (126)
T PF09403_consen 103 NKLDKEIAEQE 113 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55665555433
No 355
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=38.50 E-value=3.3e+02 Score=25.24 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=32.8
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhh
Q 020751 114 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVD 154 (322)
Q Consensus 114 MfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD 154 (322)
..-.|+.+.+.+..+.|.+...+..|..+|+.--++=..++
T Consensus 97 ~~~~~K~~~~~~~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e 137 (239)
T cd07647 97 QKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKD 137 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888999999999999999999999988776644443
No 356
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=38.48 E-value=2.4e+02 Score=27.66 Aligned_cols=9 Identities=33% Similarity=0.486 Sum_probs=4.1
Q ss_pred hhhheeeEE
Q 020751 96 VAVGYGYVW 104 (322)
Q Consensus 96 GavGYgYmw 104 (322)
.|+|+.|.|
T Consensus 194 ~Aa~~Lc~W 202 (344)
T PF12777_consen 194 KAAGSLCKW 202 (344)
T ss_dssp TTHHHHHHH
T ss_pred hcchHHHHH
Confidence 344444444
No 357
>cd04786 HTH_MerR-like_sg7 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 7) with a conserved cysteine present in the C-terminal portion of the protein. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic su
Probab=38.35 E-value=1e+02 Score=26.35 Aligned_cols=14 Identities=7% Similarity=0.207 Sum_probs=5.7
Q ss_pred HhhhhhhHHHHHHH
Q 020751 150 ITSVDRDVNKIVEI 163 (322)
Q Consensus 150 Id~vD~klDeq~ei 163 (322)
+..++=.|++.+++
T Consensus 53 lr~~GfsL~eI~~l 66 (131)
T cd04786 53 AQQAGFSLDEIRQL 66 (131)
T ss_pred HHHcCCCHHHHHHH
Confidence 33344444444443
No 358
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=38.15 E-value=82 Score=24.18 Aligned_cols=8 Identities=0% Similarity=0.418 Sum_probs=3.0
Q ss_pred hHhhhhhh
Q 020751 149 KITSVDRD 156 (322)
Q Consensus 149 RId~vD~k 156 (322)
++.+++-.
T Consensus 8 ~~~~~~~~ 15 (55)
T PF05377_consen 8 ELPRIESS 15 (55)
T ss_pred HHHHHHHH
Confidence 33333333
No 359
>PRK11115 transcriptional regulator PhoU; Provisional
Probab=38.09 E-value=3e+02 Score=24.67 Aligned_cols=46 Identities=20% Similarity=0.308 Sum_probs=35.4
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 020751 116 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 161 (322)
Q Consensus 116 VTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~ 161 (322)
-.|+.+.+-+..+.+.|+.+.+++..-..++.++|...|+.+|+..
T Consensus 20 ~~~~el~~M~~~v~~ml~~~~~al~~~d~~~~~~i~~~e~~id~l~ 65 (236)
T PRK11115 20 SIRTQVLTMGGLVEQQLSDAITAMHNQDAELAKRVIEGDHKVNMME 65 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHChHHHHHHH
Confidence 3567777777888888888888887776777788888888777765
No 360
>KOG1961 consensus Vacuolar sorting protein VPS52/suppressor of actin Sac2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=38.04 E-value=1.4e+02 Score=32.82 Aligned_cols=53 Identities=6% Similarity=0.169 Sum_probs=45.5
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHH
Q 020751 145 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 197 (322)
Q Consensus 145 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 197 (322)
..++.+..+-.+++.|..+-.++.+=.++-+.|++.|..|+..++.--..+.-
T Consensus 72 ~es~~~~~lhNqi~~cd~Vl~rme~~L~~FQ~~L~sissDI~~lqekS~~m~~ 124 (683)
T KOG1961|consen 72 KESENLASLHNQIRACDSVLERMETMLSSFQSDLSSISSDIKILQEKSNDMQL 124 (683)
T ss_pred HhhhhhhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHH
Confidence 34568889999999999999999999999999999999999999966544433
No 361
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=38.01 E-value=4.1e+02 Score=26.23 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=14.1
Q ss_pred hhHHHHHHHHHHhHHHHHHHHH
Q 020751 119 RSLSDACNSVARQLEDVYSSIS 140 (322)
Q Consensus 119 RnMsnAv~svtKqLeqVs~sLa 140 (322)
...++..+.+.+.+|+++..+-
T Consensus 142 d~~ad~lE~~~~~ld~ls~~if 163 (316)
T PRK11085 142 EQLADEIENIYSDLEKLSRVIM 163 (316)
T ss_pred HHhHHHHHHHHHHHHHHHHHhc
Confidence 3456666666667776666664
No 362
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=37.95 E-value=1.7e+02 Score=31.34 Aligned_cols=68 Identities=24% Similarity=0.259 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 020751 133 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 200 (322)
Q Consensus 133 eqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 200 (322)
++++..|+++....-+.|-..|.+.++..+-......||.++-.-++.+..++..++.-+..+|.+=.
T Consensus 8 ~~L~~eL~~le~~ni~~l~~s~~~v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE~qn~ 75 (701)
T PF09763_consen 8 ERLSKELSALEAANIHSLLESEKQVNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIESQNN 75 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44555666666666666777777777777666667777766666666666666666655555554433
No 363
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=37.89 E-value=94 Score=27.18 Aligned_cols=60 Identities=13% Similarity=0.268 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhH--HHHHHHHHHHHHHHHHhhcchhhhhh
Q 020751 120 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDV--NKIVEISQATQEEVTILRGRSKLIGD 183 (322)
Q Consensus 120 nMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~kl--Deq~eis~~i~~eV~~v~~dls~ig~ 183 (322)
.|..-+..+..+|..+... -++|...+..+...+ ++..+...+.++|+..+...|..+..
T Consensus 76 ~ld~ei~~L~~el~~l~~~----~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKE----VKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444454444444333 344444555555544 56666666666676666666666554
No 364
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.87 E-value=1.1e+02 Score=26.51 Aligned_cols=49 Identities=12% Similarity=0.254 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHH
Q 020751 120 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQ 168 (322)
Q Consensus 120 nMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~ 168 (322)
-|.+|.+.==|-+.||-|.|+.--.+|+++.++|.--|.+..+|...++
T Consensus 58 eMNkaTaakY~DMk~iAEkla~k~deLn~KfenL~P~lqQIDaiddst~ 106 (120)
T KOG4559|consen 58 EMNKATAAKYKDMKQIAEKLAGKLDELNLKFENLAPMLQQIDAIDDSTD 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4677777777778888888887777888888887777777766666554
No 365
>PRK11677 hypothetical protein; Provisional
Probab=37.85 E-value=2.2e+02 Score=25.18 Aligned_cols=42 Identities=7% Similarity=0.116 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 020751 133 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 174 (322)
Q Consensus 133 eqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v 174 (322)
.++...|..+|.+|.+-=+.|.+..++..++-..+.++=.++
T Consensus 32 ~~le~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~L 73 (134)
T PRK11677 32 QALQYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQL 73 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555666666666667777778888877776665433
No 366
>KOG3758 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.83 E-value=3e+02 Score=30.33 Aligned_cols=80 Identities=13% Similarity=0.270 Sum_probs=61.9
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHH
Q 020751 118 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 197 (322)
Q Consensus 118 KRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 197 (322)
||||..- +-+++=+..+..-.+=+++..|+++|+..+++++-....++.+.+....+...+-...+.++.--..||.
T Consensus 51 RRnLr~~---iE~~~l~iN~e~l~ef~~i~~~l~~v~e~v~km~~t~~~l~s~ls~~k~~t~dli~~t~~l~~e~~~le~ 127 (655)
T KOG3758|consen 51 RRNLRSD---IESRLLKINEEFLKEFKEIKRRLDRVSEDVEKMANTCDKLKSNLSTSKATTQDLIQKTETLKEEAAQLEL 127 (655)
T ss_pred HhhhhhH---HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 7777654 4456666677777778899999999999999999999999999988888877777777777755555555
Q ss_pred HHH
Q 020751 198 KLI 200 (322)
Q Consensus 198 Ki~ 200 (322)
|..
T Consensus 128 r~k 130 (655)
T KOG3758|consen 128 RKK 130 (655)
T ss_pred HHH
Confidence 443
No 367
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=37.66 E-value=1.7e+02 Score=21.61 Aligned_cols=34 Identities=9% Similarity=0.230 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHH
Q 020751 156 DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 196 (322)
Q Consensus 156 klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le 196 (322)
.|..|.|..+.+.+.+ ..|...+...+.++..++
T Consensus 30 ~L~~Qre~L~~~~~kl-------~~i~~~l~~s~~~l~~I~ 63 (66)
T PF12352_consen 30 DLRSQREQLKRVRDKL-------DDIDSNLPKSNSLLKRIS 63 (66)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHhhHHHHHHHHHH
Confidence 3444444444444444 344444555554444443
No 368
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=37.59 E-value=1.5e+02 Score=26.74 Aligned_cols=48 Identities=15% Similarity=0.270 Sum_probs=23.4
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 020751 142 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 189 (322)
Q Consensus 142 aKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 189 (322)
--++|..|=|.|...|....++.+.-.+=++.+.-=++-+.+|+..|.
T Consensus 99 ~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi~vvl~yL~~dl~~v~ 146 (159)
T PF05384_consen 99 REKQLRERRDELERRLRNLEETIERAENLVSQIGVVLNYLSGDLQQVS 146 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 334555555555555555555555444444444444444444444444
No 369
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=37.55 E-value=4e+02 Score=25.98 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhHhhhhhh----HHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020751 138 SISAAQRQLSSKITSVDRD----VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 204 (322)
Q Consensus 138 sLaaaKrhLsqRId~vD~k----lDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~ 204 (322)
.|.....++.+.|+.+..+ +-+..+....+.+++..+...+.++..++.++.........+...+..
T Consensus 18 ~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~~~ 88 (338)
T PF04124_consen 18 SLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKISE 88 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433 223345555555666666666666666666555555555555444433
No 370
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=37.30 E-value=2e+02 Score=26.33 Aligned_cols=80 Identities=11% Similarity=0.140 Sum_probs=47.1
Q ss_pred CcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHH-HHHHHHHHHHhhcchhhhhhHHHH
Q 020751 109 KLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEI-SQATQEEVTILRGRSKLIGDEFQS 187 (322)
Q Consensus 109 sfSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~ei-s~~i~~eV~~v~~dls~ig~Dv~~ 187 (322)
||.|.+=--|+.++++-+.+- -|+.=+.-|...=..+++.+.-+-.+..++-++ .+.+.++|.+++.-++..+.|+.-
T Consensus 62 ~~~~~~~g~kk~~~~~~eele-rLe~~iKdl~~lye~Vs~d~Npf~s~~~qes~~~veel~eqV~el~~i~emv~~d~~~ 140 (157)
T COG3352 62 KVKIEIEGQKKQLQDIKEELE-RLEENIKDLVSLYELVSRDFNPFMSKTPQESRGIVEELEEQVNELKMIVEMVIKDLRE 140 (157)
T ss_pred cccccccchhhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Confidence 355555555666666666553 344444455555555666666666666666665 666666666666666666666554
Q ss_pred HH
Q 020751 188 VR 189 (322)
Q Consensus 188 v~ 189 (322)
+.
T Consensus 141 l~ 142 (157)
T COG3352 141 LY 142 (157)
T ss_pred hc
Confidence 43
No 371
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=37.21 E-value=2.3e+02 Score=31.21 Aligned_cols=72 Identities=14% Similarity=0.223 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchh---hhhhHHHHHHHHHHHHHHHHHH
Q 020751 130 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK---LIGDEFQSVRDIVQTLESKLIE 201 (322)
Q Consensus 130 KqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls---~ig~Dv~~v~~~V~~Le~Ki~~ 201 (322)
.+.+..-..+..+=+.|.-.+.+|+..+++++......++++..++..+. .++.++.....-+..|+-+|.+
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e 492 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEE 492 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
No 372
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=37.18 E-value=3.9e+02 Score=25.80 Aligned_cols=26 Identities=19% Similarity=0.406 Sum_probs=9.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhhcc
Q 020751 152 SVDRDVNKIVEISQATQEEVTILRGR 177 (322)
Q Consensus 152 ~vD~klDeq~eis~~i~~eV~~v~~d 177 (322)
.+.+.|.+..+..+.++++...+++.
T Consensus 107 ~le~el~~l~~~~~~l~~~i~~l~~~ 132 (239)
T COG1579 107 SLEDELAELMEEIEKLEKEIEDLKER 132 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333
No 373
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=37.17 E-value=3.3e+02 Score=24.90 Aligned_cols=46 Identities=15% Similarity=0.275 Sum_probs=20.7
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHH
Q 020751 145 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD 190 (322)
Q Consensus 145 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~ 190 (322)
.+...++....+++...+-.+..++++...+..+......++.-+.
T Consensus 60 ~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~ 105 (302)
T PF10186_consen 60 QLKREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRS 105 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444444444444444443
No 374
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=37.11 E-value=3e+02 Score=24.35 Aligned_cols=44 Identities=11% Similarity=0.208 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcch
Q 020751 135 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRS 178 (322)
Q Consensus 135 Vs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dl 178 (322)
+.+.|....+.+..||+.+...|++...-+..+.+-|..++.-+
T Consensus 23 i~~~L~k~~~~v~~~i~~L~~~L~~~~n~t~~~~~~v~~i~~~~ 66 (146)
T PF08702_consen 23 IQDFLDKYERDVDKDIQELENLLDQISNSTSEAFEYVKNIKDSL 66 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 56778889999999999999999998888888877777666543
No 375
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=36.93 E-value=1e+02 Score=23.45 Aligned_cols=33 Identities=9% Similarity=0.274 Sum_probs=19.6
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH
Q 020751 130 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 162 (322)
Q Consensus 130 KqLeqVs~sLaaaKrhLsqRId~vD~klDeq~e 162 (322)
+=|+|+++.....-..+..|||.+..++|+...
T Consensus 10 ~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~ 42 (54)
T PF06825_consen 10 NLLQQMQDKFQTMSDQILGRIDEMSSRIDDLEK 42 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 335555555555556666677666666665443
No 376
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=36.87 E-value=1.1e+02 Score=29.43 Aligned_cols=44 Identities=11% Similarity=0.288 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 020751 134 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 177 (322)
Q Consensus 134 qVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~d 177 (322)
.+=.-|.+.|..+.+|...|...+.++.+.....+.||..++.|
T Consensus 79 siLpIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~D 122 (248)
T PF08172_consen 79 SILPIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRAD 122 (248)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788999999999999999999999999999998877775
No 377
>COG5665 NOT5 CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=36.85 E-value=3.1e+02 Score=28.93 Aligned_cols=44 Identities=14% Similarity=0.236 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 020751 121 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE 170 (322)
Q Consensus 121 MsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~e 170 (322)
..||+..+-+|+|+.-.. ++..||++-...++...-|-+..++.
T Consensus 117 i~~~~~el~~q~e~~ea~------e~e~~~erh~~h~~~le~i~~~l~n~ 160 (548)
T COG5665 117 IHDCLDELQKQLEQYEAQ------ENEEQTERHEFHIANLENILKKLQNN 160 (548)
T ss_pred HHHHHHHHHHHHHHHHHH------HhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 689999999999986543 88899999999988887777766653
No 378
>PRK04863 mukB cell division protein MukB; Provisional
Probab=36.68 E-value=5.6e+02 Score=30.84 Aligned_cols=15 Identities=13% Similarity=0.200 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhcC
Q 020751 56 LLAEVSSVQQELSHV 70 (322)
Q Consensus 56 L~aQV~~LaqElr~L 70 (322)
+...++..++=+..+
T Consensus 235 m~~~l~~~r~t~~~~ 249 (1486)
T PRK04863 235 MEAALRENRMTLEAI 249 (1486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666655555
No 379
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=36.56 E-value=1.4e+02 Score=25.56 Aligned_cols=32 Identities=19% Similarity=0.386 Sum_probs=24.0
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020751 117 TRRSLSDACNSVARQLEDVYSSISAAQRQLSS 148 (322)
Q Consensus 117 TKRnMsnAv~svtKqLeqVs~sLaaaKrhLsq 148 (322)
-|+++=++++.+.+|+.++++.+++-|.++..
T Consensus 2 dk~elfd~l~~le~~l~~l~~el~~LK~~~~e 33 (110)
T PRK13169 2 DKKEIFDALDDLEQNLGVLLKELGALKKQLAE 33 (110)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777788888888888888877777776654
No 380
>PHA00276 phage lambda Rz-like lysis protein
Probab=36.55 E-value=1.6e+02 Score=26.67 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhhhhhHHH
Q 020751 156 DVNKIVEISQATQEEVTILRGRSKLIGDEFQ 186 (322)
Q Consensus 156 klDeq~eis~~i~~eV~~v~~dls~ig~Dv~ 186 (322)
.+.+..+++...++|+..++.....+..|+.
T Consensus 50 ~QqaVaal~~~yqkEladaK~~~DrLiadlR 80 (144)
T PHA00276 50 TQAAINAVSKEYQEDLAALEGSTDRVIADLR 80 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4677788888888888877776555555543
No 381
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=36.34 E-value=3.3e+02 Score=32.07 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=10.3
Q ss_pred CcCchhhhhhhhHHHHHHHH
Q 020751 109 KLPDMMFATRRSLSDACNSV 128 (322)
Q Consensus 109 sfSDlMfVTKRnMsnAv~sv 128 (322)
+.+|+-+..-.+.+-||..+
T Consensus 893 ~~p~f~~~~v~~~s~a~~~l 912 (1395)
T KOG3595|consen 893 QNPDFVPEKVNRASLACEGL 912 (1395)
T ss_pred CCccCCHHHHHhhhhhhhhH
Confidence 34555555555555555544
No 382
>PRK10807 paraquat-inducible protein B; Provisional
Probab=36.29 E-value=1.2e+02 Score=32.12 Aligned_cols=22 Identities=0% Similarity=0.105 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhHhhhhhhH
Q 020751 136 YSSISAAQRQLSSKITSVDRDV 157 (322)
Q Consensus 136 s~sLaaaKrhLsqRId~vD~kl 157 (322)
-+.+.++=+++.+-+++++..+
T Consensus 438 ~~~l~~tL~~~~~tl~~l~~~l 459 (547)
T PRK10807 438 IEQATSTLSESQRTMRELQTTL 459 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 383
>PF02520 DUF148: Domain of unknown function DUF148; InterPro: IPR003677 This entry represents the domain DUF148, which has no known function.
Probab=35.88 E-value=1.2e+02 Score=24.86 Aligned_cols=13 Identities=23% Similarity=0.353 Sum_probs=5.1
Q ss_pred hhhhhHHHHHHHH
Q 020751 116 ATRRSLSDACNSV 128 (322)
Q Consensus 116 VTKRnMsnAv~sv 128 (322)
+.+.++.+.++..
T Consensus 29 a~~~~v~~~~~~f 41 (113)
T PF02520_consen 29 AEKYGVQDQYNEF 41 (113)
T ss_pred HHHCCcHHHHHHH
Confidence 3444434333333
No 384
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=35.87 E-value=3.2e+02 Score=30.07 Aligned_cols=64 Identities=14% Similarity=0.229 Sum_probs=48.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHH
Q 020751 123 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 186 (322)
Q Consensus 123 nAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~ 186 (322)
+-+..+--..++|+.+|..+=.++.+||=++...++.+..=....++++..++++++....|-.
T Consensus 38 ~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~ 101 (766)
T PF10191_consen 38 SLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDTA 101 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHH
Confidence 3333333456788888888888899999899998888888888888888888888777665543
No 385
>PRK04654 sec-independent translocase; Provisional
Probab=35.84 E-value=3.3e+02 Score=26.16 Aligned_cols=33 Identities=9% Similarity=0.130 Sum_probs=24.4
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHh
Q 020751 119 RSLSDACNSVARQLEDVYSSISAAQRQLSSKIT 151 (322)
Q Consensus 119 RnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId 151 (322)
+.|=.+...+++-+.++-..+..+|.++.+-++
T Consensus 23 erLPe~aRtlGk~irk~R~~~~~vk~El~~El~ 55 (214)
T PRK04654 23 ERLPKAARFAGLWVRRARMQWDSVKQELERELE 55 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456777788888888877777777777766553
No 386
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=35.84 E-value=68 Score=32.17 Aligned_cols=35 Identities=17% Similarity=0.253 Sum_probs=20.7
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 020751 114 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSS 148 (322)
Q Consensus 114 MfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsq 148 (322)
+|+..=|..++.+.+.+++++....++..+..|.+
T Consensus 233 ~~~A~l~~~~~~~~l~~~~~~~~~~i~~l~~~l~~ 267 (406)
T PF02388_consen 233 FFLAELNGKEYLESLQEKLEKLEKEIEKLEEKLEK 267 (406)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45556666666666666666666555555544433
No 387
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=35.82 E-value=3.8e+02 Score=30.87 Aligned_cols=84 Identities=18% Similarity=0.324 Sum_probs=40.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH--------HHHhhc---chhhhhhHHHHHHH
Q 020751 122 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE--------VTILRG---RSKLIGDEFQSVRD 190 (322)
Q Consensus 122 snAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~e--------V~~v~~---dls~ig~Dv~~v~~ 190 (322)
....+.+..++++..+.+...+.++..+++.++..+..++.-.+.+.++ +.++.. .+..+..+++.++.
T Consensus 287 ~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~ 366 (1201)
T PF12128_consen 287 KEELNELNEELEKLEDEIKELRDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQE 366 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3344444444455555555555555555555555554444333333322 222222 22344555555666
Q ss_pred HHHHHHHHHHHhhhh
Q 020751 191 IVQTLESKLIEIEGK 205 (322)
Q Consensus 191 ~V~~Le~Ki~~iE~k 205 (322)
....|.+|...|+.+
T Consensus 367 ~~~~Lt~~~~di~~k 381 (1201)
T PF12128_consen 367 QLDLLTSKHQDIESK 381 (1201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666644
No 388
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=35.75 E-value=3.9e+02 Score=29.01 Aligned_cols=79 Identities=16% Similarity=0.302 Sum_probs=56.2
Q ss_pred hheeeEEeccCCcCchhhhhhh--hHHHH-------------------HHHHHHhHHHHHHHHH---HHHHHHHHhHhhh
Q 020751 98 VGYGYVWWKGWKLPDMMFATRR--SLSDA-------------------CNSVARQLEDVYSSIS---AAQRQLSSKITSV 153 (322)
Q Consensus 98 vGYgYmwWKGwsfSDlMfVTKR--nMsnA-------------------v~svtKqLeqVs~sLa---aaKrhLsqRId~v 153 (322)
-||.=|-=+|..|.++ =+-+| +|.+. .+.+-..++++|+-+. +||+....+...+
T Consensus 236 ~Gyr~m~~~gY~l~~~-~id~~~~~L~~~l~~~~~~l~~Leld~aeeel~~I~e~ie~lYd~lE~EveA~~~V~~~~~~l 314 (570)
T COG4477 236 AGYRDMKEEGYHLEHV-NIDSRLERLKEQLVENSELLTQLELDEAEEELGLIQEKIESLYDLLEREVEAKNVVEENLPIL 314 (570)
T ss_pred HHHHHHHHccCCcccc-cHHHHHHHHHHHHHHHHhHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch
Confidence 3788888999999983 22211 22222 2223345566666664 6899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcc
Q 020751 154 DRDVNKIVEISQATQEEVTILRGR 177 (322)
Q Consensus 154 D~klDeq~eis~~i~~eV~~v~~d 177 (322)
-+.|+.+++....+++|+..|+..
T Consensus 315 ~~~l~k~ke~n~~L~~Eie~V~~s 338 (570)
T COG4477 315 PDYLEKAKENNEHLKEEIERVKES 338 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998877653
No 389
>PHA03395 p10 fibrous body protein; Provisional
Probab=35.71 E-value=1.5e+02 Score=24.84 Aligned_cols=22 Identities=5% Similarity=0.279 Sum_probs=12.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 020751 122 SDACNSVARQLEDVYSSISAAQ 143 (322)
Q Consensus 122 snAv~svtKqLeqVs~sLaaaK 143 (322)
.+|++.+..+++-++.++...+
T Consensus 10 r~dIkavd~KVdalQ~~V~~l~ 31 (87)
T PHA03395 10 RQDIKAVSDKVDALQAAVDDVR 31 (87)
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 3456666666665555555554
No 390
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=35.65 E-value=2.4e+02 Score=26.24 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=17.0
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHH
Q 020751 130 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS 164 (322)
Q Consensus 130 KqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis 164 (322)
..|.+-+.+|...-+.++ ||.||+=+|+..|..
T Consensus 111 ~aLk~g~~aLK~~~k~~~--idkVd~lmDei~E~~ 143 (191)
T PTZ00446 111 NALSYAANTHKKLNNEIN--TQKVEKIIDTIQENK 143 (191)
T ss_pred HHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHH
Confidence 344444444444444442 666666666555543
No 391
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=35.53 E-value=4.4e+02 Score=26.09 Aligned_cols=113 Identities=16% Similarity=0.271 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhcC-CCceEEEeCCCCCCCCchHHHHHHHhhhheeeEEeccCCcCchhhhhhhhHHHHHHHHHHhHHH
Q 020751 56 LLAEVSSVQQELSHV-PRSVIIETSSGSGTGAKKYGVIVVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLED 134 (322)
Q Consensus 56 L~aQV~~LaqElr~L-sR~ITVvn~~ssg~gg~~y~l~a~iGavGYgYmwWKGwsfSDlMfVTKRnMsnAv~svtKqLeq 134 (322)
++.|+..|.-|+.+. .+..-|+..+ --++.++ .|..|. -+..+|+.
T Consensus 57 l~~~~k~L~aE~~qwqk~~peii~~n--------~~VL~~l---------------------gkeelq----kl~~eLe~ 103 (268)
T PF11802_consen 57 LMMRVKCLTAELEQWQKRTPEIIPLN--------PEVLLTL---------------------GKEELQ----KLISELEM 103 (268)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCCCC--------HHHHHHH---------------------HHHHHH----HHHHHHHH
Confidence 888999999999998 6655566655 1112222 244444 45567888
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020751 135 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 206 (322)
Q Consensus 135 Vs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQ 206 (322)
|-..+.+=.++|..-+++-..=|+++++|-+.......+++.....+.+ +.++..|+.||..++.-+
T Consensus 104 vLs~~q~KnekLke~LerEq~wL~Eqqql~~sL~~r~~elk~~~~~~se-----~rv~~el~~K~~~~k~~~ 170 (268)
T PF11802_consen 104 VLSTVQSKNEKLKEDLEREQQWLDEQQQLLESLNKRHEELKNQVETFSE-----SRVFQELKTKIEKIKEYK 170 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccch-----HHHHHHHHHHHHHHHHHH
Confidence 8888888888999889999999999999999988888888766555544 356678888888877443
No 392
>PLN02678 seryl-tRNA synthetase
Probab=35.50 E-value=3.8e+02 Score=27.93 Aligned_cols=86 Identities=10% Similarity=0.102 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHHH----HHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchh---hhhhHHHHHHHHHHHHHHHHHHhh
Q 020751 131 QLEDVYSSISAAQRQL----SSKITSVDRDVNKIVEISQATQEEVTILRGRSK---LIGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 131 qLeqVs~sLaaaKrhL----sqRId~vD~klDeq~eis~~i~~eV~~v~~dls---~ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
+.|.|-++|. ||.+ -.+|-.+|.+.-+...-.+..+.+-+.+...+. .-+.|.+.+..-+..|..+|..+|
T Consensus 14 ~~~~v~~~l~--~R~~~~~~id~il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le 91 (448)
T PLN02678 14 DPELIRESQR--RRFASVELVDEVIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKE 91 (448)
T ss_pred CHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 5555555554 2221 234444444433333333333333333333332 334567777777888888999999
Q ss_pred hhhhHHhHHHHHHHH
Q 020751 204 GKQDITTLGVKKLCD 218 (322)
Q Consensus 204 ~kQd~Tn~GV~~LC~ 218 (322)
...+....-+..++.
T Consensus 92 ~~~~~~~~~l~~~~~ 106 (448)
T PLN02678 92 AEVQEAKAALDAKLK 106 (448)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888777654
No 393
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=35.46 E-value=97 Score=27.23 Aligned_cols=28 Identities=21% Similarity=0.292 Sum_probs=17.0
Q ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020751 176 GRSKLIGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 176 ~dls~ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
++|.++-.-++.+...+.-||.||++|.
T Consensus 21 ~kL~~~e~~Lq~~E~~l~iLEaKL~SIp 48 (148)
T PF10152_consen 21 EKLSDMEQRLQRLEATLNILEAKLSSIP 48 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3444444445566666667777777776
No 394
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=35.35 E-value=2.2e+02 Score=22.38 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=28.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 020751 154 DRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 216 (322)
Q Consensus 154 D~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~L 216 (322)
..+|.+-.+.+.+..+|-..+...--....-|..++.-+..+|..+..+..+.+-...-+..|
T Consensus 4 ~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l 66 (74)
T PF12329_consen 4 EKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESL 66 (74)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555444444444444444444444444444444444444433333333333
No 395
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=35.28 E-value=5.2e+02 Score=26.69 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhHhhhhhhHH-HHHHHHHHHHHH
Q 020751 138 SISAAQRQLSSKITSVDRDVN-KIVEISQATQEE 170 (322)
Q Consensus 138 sLaaaKrhLsqRId~vD~klD-eq~eis~~i~~e 170 (322)
.+......|...|++|..++. +...+.+..++|
T Consensus 223 eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEE 256 (395)
T PF10267_consen 223 EIKESQSRLEESIEKLKEQYQREYQFILEALQEE 256 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555666655332 444444444444
No 396
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=35.24 E-value=4.1e+02 Score=29.52 Aligned_cols=84 Identities=13% Similarity=0.192 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHH---HHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHH
Q 020751 119 RSLSDACNSVARQLEDVYSSISAAQRQL---SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 195 (322)
Q Consensus 119 RnMsnAv~svtKqLeqVs~sLaaaKrhL---sqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~L 195 (322)
|.+.+-+..+.+.+.....++...|++- .++.+.+--++++....-++|+..+.+.+..++.+.+-...++.=...|
T Consensus 534 ~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L 613 (698)
T KOG0978|consen 534 RGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERL 613 (698)
T ss_pred HHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566677777777777777777653 3444455555555555555555555444444443333333333333333
Q ss_pred HHHHHHh
Q 020751 196 ESKLIEI 202 (322)
Q Consensus 196 e~Ki~~i 202 (322)
-.|+.++
T Consensus 614 ~~kle~~ 620 (698)
T KOG0978|consen 614 KRKLERL 620 (698)
T ss_pred HHHHHHh
Confidence 3444433
No 397
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=35.20 E-value=3.7e+02 Score=24.94 Aligned_cols=71 Identities=18% Similarity=0.380 Sum_probs=32.2
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHH----------HHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHH
Q 020751 117 TRRSLSDACNSVARQLEDVYSSISAAQRQL----------SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 186 (322)
Q Consensus 117 TKRnMsnAv~svtKqLeqVs~sLaaaKrhL----------sqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~ 186 (322)
.++.|.+--......|+++-..|..|+..+ ..|+..+...|+...+=.......+.++...+..++..+.
T Consensus 79 ~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk 158 (237)
T PF00261_consen 79 ARKVLENREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLK 158 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555432 2333333333333333334444444444444444444443
Q ss_pred H
Q 020751 187 S 187 (322)
Q Consensus 187 ~ 187 (322)
+
T Consensus 159 ~ 159 (237)
T PF00261_consen 159 S 159 (237)
T ss_dssp H
T ss_pred H
Confidence 3
No 398
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=35.08 E-value=3.5e+02 Score=29.77 Aligned_cols=34 Identities=18% Similarity=0.373 Sum_probs=21.5
Q ss_pred hhhhhhhhHHHHHHHH----HHhHHHHHHHHHHHHHHH
Q 020751 113 MMFATRRSLSDACNSV----ARQLEDVYSSISAAQRQL 146 (322)
Q Consensus 113 lMfVTKRnMsnAv~sv----tKqLeqVs~sLaaaKrhL 146 (322)
.||+|.+.|...+... .+.++++..-+..+..|+
T Consensus 159 ~aF~~n~~l~~~v~~~~~~~~~~~~Dl~~~l~~~~~qi 196 (806)
T PF05478_consen 159 CAFVANQQLSTGVDDTPNTVNSTLDDLRTFLNDTPQQI 196 (806)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4899998887777644 445555555555555544
No 399
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=34.99 E-value=1e+02 Score=25.70 Aligned_cols=16 Identities=25% Similarity=0.628 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHhh
Q 020751 188 VRDIVQTLESKLIEIE 203 (322)
Q Consensus 188 v~~~V~~Le~Ki~~iE 203 (322)
++.....+-.+|..|+
T Consensus 53 ~~~~~~~ik~~lk~l~ 68 (151)
T cd00179 53 IKKLAKEIKGKLKELE 68 (151)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333444444444443
No 400
>PRK12482 flagellar motor protein MotA; Provisional
Probab=34.96 E-value=2.2e+02 Score=28.03 Aligned_cols=93 Identities=15% Similarity=0.213 Sum_probs=67.5
Q ss_pred HHHHHHHhhhheeeEEecc-----CCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhh---hhhHHHH
Q 020751 89 YGVIVVIVAVGYGYVWWKG-----WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSV---DRDVNKI 160 (322)
Q Consensus 89 y~l~a~iGavGYgYmwWKG-----wsfSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~v---D~klDeq 160 (322)
.++++++|++.+||+.=.| |.++-+|-|-=-.+ ++.-++.-++++-..+...|+-+..+-.+. .+-++..
T Consensus 5 iGlv~~~~~v~~g~~l~Gg~~~~~~~~~~~lIV~GGt~--ga~lis~p~~~~~~~~k~~~~~f~~~~~~~~~y~~~i~~l 82 (287)
T PRK12482 5 FGLLVVMGCVFGGYLMSGGSLSSIWQPGEIIIILGAGI--GAMILGNPKSVLKEMWHQIKGVIRRKEYGVEFQRQLLLLL 82 (287)
T ss_pred HHHHHHHHHHHHHHHHhCCChHHHHhHHHHHHHHHHHH--HHHHHhCCHHHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Confidence 4566778888888876455 56666676665544 345567888999999999999887766555 4778888
Q ss_pred HHHHHHHHHH-HHHhhcchhhhhh
Q 020751 161 VEISQATQEE-VTILRGRSKLIGD 183 (322)
Q Consensus 161 ~eis~~i~~e-V~~v~~dls~ig~ 183 (322)
.++++.-|.| +-.+..+++++.+
T Consensus 83 v~ls~~aRr~GllaLE~~i~~~~d 106 (287)
T PRK12482 83 YELLEMVQEGGLKRLDQHIEIPEE 106 (287)
T ss_pred HHHHHHHHhcCHHHHHHhhcCccc
Confidence 9999888887 6666666666654
No 401
>smart00298 CHROMO Chromatin organization modifier domain.
Probab=34.91 E-value=46 Score=22.85 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=20.9
Q ss_pred eeeEEeccCCcCchhhhhhhhHHH
Q 020751 100 YGYVWWKGWKLPDMMFATRRSLSD 123 (322)
Q Consensus 100 YgYmwWKGwsfSDlMfVTKRnMsn 123 (322)
.-|+.|+|++-++--+++..++.+
T Consensus 19 ~ylVkW~g~~~~~~tW~~~~~l~~ 42 (55)
T smart00298 19 EYLVKWKGYSYSEDTWEPEENLLN 42 (55)
T ss_pred EEEEEECCCCCccCceeeHHHHHH
Confidence 347899999999999999988886
No 402
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=34.90 E-value=2.2e+02 Score=22.21 Aligned_cols=19 Identities=21% Similarity=0.349 Sum_probs=7.5
Q ss_pred HHHhHHHHHHHHHHHHHHH
Q 020751 128 VARQLEDVYSSISAAQRQL 146 (322)
Q Consensus 128 vtKqLeqVs~sLaaaKrhL 146 (322)
+-.++++|.+.+...=+.+
T Consensus 8 i~~~v~~v~~im~~Ni~~l 26 (89)
T PF00957_consen 8 IQEQVEEVKNIMRENIDKL 26 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444443333333
No 403
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.90 E-value=1.3e+02 Score=29.81 Aligned_cols=52 Identities=17% Similarity=0.239 Sum_probs=30.2
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHH-HHHHHHHHHH
Q 020751 149 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI-VQTLESKLIE 201 (322)
Q Consensus 149 RId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~-V~~Le~Ki~~ 201 (322)
+|.+|..-|.+-....-.-..++++++.| .+-..+++..|.+ |..|-.|+.+
T Consensus 233 eia~Lkk~L~qkdq~ileKdkqisnLKad-~e~~~~~ek~Hke~v~qL~~k~~~ 285 (305)
T KOG3990|consen 233 EIARLKKLLHQKDQLILEKDKQISNLKAD-KEYQKELEKKHKERVQQLQKKKEE 285 (305)
T ss_pred HHHHHHHHHhhhHHHHHhhhhhhhccCcc-hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333345567777777 5555778888877 7777776654
No 404
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=34.40 E-value=1.2e+02 Score=30.89 Aligned_cols=13 Identities=8% Similarity=0.135 Sum_probs=7.4
Q ss_pred hhHHHHHHhhhhc
Q 020751 30 GGTLKIVSKLIKQ 42 (322)
Q Consensus 30 sgalk~l~K~lk~ 42 (322)
-+.|..+..++++
T Consensus 233 ~~~ltrL~~~~~~ 245 (370)
T PLN03094 233 VGICTRLAREMEA 245 (370)
T ss_pred HHHHHHHHHHhhh
Confidence 3566666665554
No 405
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=34.29 E-value=14 Score=38.63 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=15.2
Q ss_pred ceEeeccceeeeec----cCCC
Q 020751 4 FFSCVSGILTSVLA----KEGR 21 (322)
Q Consensus 4 lILvGAG~~GSVl~----knGk 21 (322)
+|+||||++|+.++ |+||
T Consensus 48 vIIVGAGV~GsaLa~~L~kdGR 69 (509)
T KOG1298|consen 48 VIIVGAGVAGSALAYALAKDGR 69 (509)
T ss_pred EEEECCcchHHHHHHHHhhCCc
Confidence 69999999998654 7887
No 406
>KOG0630 consensus Predicted pyridoxal-dependent decarboxylase [Amino acid transport and metabolism]
Probab=34.27 E-value=2.1e+02 Score=31.30 Aligned_cols=37 Identities=19% Similarity=0.341 Sum_probs=24.2
Q ss_pred CcccccccCCCCCC---CCCCCCCCCC-CCCCCCCCCCCCC
Q 020751 238 TLSRTTLELPGITP---SSRSGSLHPL-PLEPPSPSXXXXX 274 (322)
Q Consensus 238 ~s~~~ale~~~~~p---~sr~~slpp~-~~e~~sps~~~~~ 274 (322)
+.++|+=|.||+.- ...+..+||. |..-|.|.+.+||
T Consensus 787 a~pi~aNesP~iPhepfatkadaeP~s~ptsE~a~~eea~S 827 (838)
T KOG0630|consen 787 AHPIPANESPPIPHEPFATKADAEPPSEPTSEPAPGEEAGS 827 (838)
T ss_pred CCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCcC
Confidence 47889999888631 2556677777 6555666665554
No 407
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=34.25 E-value=2.7e+02 Score=29.49 Aligned_cols=56 Identities=21% Similarity=0.380 Sum_probs=27.6
Q ss_pred HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751 141 AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 202 (322)
Q Consensus 141 aaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 202 (322)
+--+.|.+|-+++|.++++.. +.+=.++..+.++...+.+.++..+..|..+++.+
T Consensus 87 ~eN~~L~~r~~~id~~i~~av------~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~~l~~~ 142 (472)
T TIGR03752 87 AENERLQKREQSIDQQIQQAV------QSETQELTKEIEQLKSERQQLQGLIDQLQRRLAGV 142 (472)
T ss_pred HHHHHHHHhhhhHHHHHHHHH------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444445444544443332 22223344444555566666666666666666543
No 408
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=34.19 E-value=4e+02 Score=25.06 Aligned_cols=109 Identities=11% Similarity=0.206 Sum_probs=69.2
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHH-HHHHHHHHHhhcchhhhhhHHHH----H
Q 020751 114 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS-QATQEEVTILRGRSKLIGDEFQS----V 188 (322)
Q Consensus 114 MfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis-~~i~~eV~~v~~dls~ig~Dv~~----v 188 (322)
++-.++.+.+.+..+-|.+-.-+..+..+|+.+-+|-...+....+...-- ..+.+++..++.+++.-.+++.. .
T Consensus 98 ~~k~~k~~e~~~~k~~K~~~~~~~~~~kaKk~y~~~cke~e~~~~~~~~~k~~~s~~~~~K~~~K~~Ka~~e~~~~ve~y 177 (233)
T cd07649 98 FKKDMKKLDHHIADLRKQLASRYAAVEKARKALLERQKDLEGKTQQLEIKLSNKTEEDIKKARRKSTQAGDDLMRCVDLY 177 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999999999999999999999999988887655432211 11234445555544444333322 2
Q ss_pred HHHHHHHHHHHHHhhhh-hhHHhHHHHHHHHHHHh
Q 020751 189 RDIVQTLESKLIEIEGK-QDITTLGVKKLCDRARE 222 (322)
Q Consensus 189 ~~~V~~Le~Ki~~iE~k-Qd~Tn~GV~~LC~f~~~ 222 (322)
..+-..++.++..+-.. |.+-..-|..|.+++.+
T Consensus 178 ~~~r~~we~~m~~~~~~~Q~~Ee~Rl~~lk~~L~~ 212 (233)
T cd07649 178 NQAQSKWFEEMVTTSLELERLEVERIEMIRQHLCQ 212 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334555555554433 66666666666665543
No 409
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=34.14 E-value=3.9e+02 Score=24.85 Aligned_cols=36 Identities=14% Similarity=0.286 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhh
Q 020751 119 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVD 154 (322)
Q Consensus 119 RnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD 154 (322)
.+++.++..+..-++.+.+.|+.-|..+...|++.-
T Consensus 88 ~~~~~~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~ 123 (247)
T PF06705_consen 88 EQLQSRLDSLNDRIEALEEEIQEEKEERPQDIEELN 123 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 456666666666666666666666666666666543
No 410
>PLN02320 seryl-tRNA synthetase
Probab=33.97 E-value=1.4e+02 Score=31.55 Aligned_cols=34 Identities=15% Similarity=0.062 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 020751 185 FQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 218 (322)
Q Consensus 185 v~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~ 218 (322)
.+.+..-+..|-.+|..+|........-+..++.
T Consensus 132 ~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l 165 (502)
T PLN02320 132 RQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQ 165 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445555555555555444444444433
No 411
>PRK07739 flgK flagellar hook-associated protein FlgK; Validated
Probab=33.79 E-value=3.3e+02 Score=28.25 Aligned_cols=56 Identities=14% Similarity=0.285 Sum_probs=31.9
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 020751 116 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 171 (322)
Q Consensus 116 VTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV 171 (322)
+.|..+-.+-..++.++.++++.|...++.+...|+.--+++++..+-...+.+++
T Consensus 139 ~~r~~vl~~a~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I 194 (507)
T PRK07739 139 GARSVVRQRAQALAETFNYLSQSLTDIQNDLKSEIDVTVKEINSLASQISDLNKQI 194 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666666667777777777777776666666655444444433333333333333
No 412
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=33.76 E-value=2.6e+02 Score=28.05 Aligned_cols=47 Identities=32% Similarity=0.404 Sum_probs=30.2
Q ss_pred hhhhhhHHH----HHHHHHHhHHHHHH----HHHHHHHHHHHhHhhhhhhHHHHH
Q 020751 115 FATRRSLSD----ACNSVARQLEDVYS----SISAAQRQLSSKITSVDRDVNKIV 161 (322)
Q Consensus 115 fVTKRnMsn----Av~svtKqLeqVs~----sLaaaKrhLsqRId~vD~klDeq~ 161 (322)
||-|.+.+= |+..+++=|++|-+ .|...|+.|..||+-|.--+|=++
T Consensus 15 fAIRSGIslaS~yAikq~s~~l~~ip~~~~~~l~~lq~~L~~kI~IvspAIDLIe 69 (302)
T PF05508_consen 15 FAIRSGISLASSYAIKQCSRFLKKIPDKDRKELEKLQRRLESKIKIVSPAIDLIE 69 (302)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhhhccccHHHHHH
Confidence 566666653 45666666666544 577778888888877766555443
No 413
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=33.73 E-value=6.5e+02 Score=31.14 Aligned_cols=77 Identities=23% Similarity=0.350 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHH
Q 020751 120 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 199 (322)
Q Consensus 120 nMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki 199 (322)
++..-+.+|-.+....-.+-+++|+.+.+||+.|.+.|.+.+.= ..+++..+|.=......++..-+..|..+...+
T Consensus 777 ~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~k---lq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~ 853 (1822)
T KOG4674|consen 777 SLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKK---LQEKSSDLRELTNSLEKQLENAQNLVDELESEL 853 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 33344455555666667788999999999999998877665543 333333333333333444444444444443333
No 414
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=33.68 E-value=1.8e+02 Score=20.93 Aligned_cols=28 Identities=14% Similarity=0.357 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 020751 132 LEDVYSSISAAQRQLSSKITSVDRDVNK 159 (322)
Q Consensus 132 LeqVs~sLaaaKrhLsqRId~vD~klDe 159 (322)
|+++...+....++|...++.+...++.
T Consensus 9 l~~~a~~~~~~~~~l~~~~~~l~~~~~~ 36 (86)
T PF06013_consen 9 LRAAAQQLQAQADELQSQLQQLESSIDS 36 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444333
No 415
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=33.59 E-value=4.2e+02 Score=28.31 Aligned_cols=75 Identities=13% Similarity=0.275 Sum_probs=40.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020751 126 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 126 ~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
+.-.+-++.+..++.....++.-+++++...+.+..|+.+.++++-..-+++++.+. +.....+...|.||..++
T Consensus 367 ~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~---e~~~~~~~s~d~~I~dLq 441 (493)
T KOG0804|consen 367 KQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELE---EREKEALGSKDEKITDLQ 441 (493)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 334444555556666666666666666666666666666666666555555444432 223333444444444443
No 416
>PHA03332 membrane glycoprotein; Provisional
Probab=33.52 E-value=4.3e+02 Score=31.19 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhhcchhhhhhHHH----HHHHHHHHHHHH
Q 020751 161 VEISQATQEEVTILRGRSKLIGDEFQ----SVRDIVQTLESK 198 (322)
Q Consensus 161 ~eis~~i~~eV~~v~~dls~ig~Dv~----~v~~~V~~Le~K 198 (322)
..|+..+++.+.++.+.++...++++ .+..-+.+|..+
T Consensus 922 ~kisatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~q 963 (1328)
T PHA03332 922 AKISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQ 963 (1328)
T ss_pred HHHHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666666666665555543 334444444444
No 417
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=33.30 E-value=1.3e+02 Score=22.41 Aligned_cols=30 Identities=20% Similarity=0.460 Sum_probs=15.0
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 020751 145 QLSSKITSVDRDVNKIVEISQATQEEVTIL 174 (322)
Q Consensus 145 hLsqRId~vD~klDeq~eis~~i~~eV~~v 174 (322)
++.+.|+.+..++++..+-.+..+.++..+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444445555555555555455555555444
No 418
>PF15112 DUF4559: Domain of unknown function (DUF4559)
Probab=33.28 E-value=1e+02 Score=30.96 Aligned_cols=75 Identities=11% Similarity=0.174 Sum_probs=46.2
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcc------hh-hhhhHHHH
Q 020751 115 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR------SK-LIGDEFQS 187 (322)
Q Consensus 115 fVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~d------ls-~ig~Dv~~ 187 (322)
|+.+--+.|-|..-++-+..++..+.-=...|..||+.+=..++++....+++.+.|..+++- |. .++.|++.
T Consensus 203 ~~~~~d~~Dg~~~~~~~~~~~~~i~e~e~e~Lke~lqel~~~~e~~~~~~ee~~~~l~~~~~fL~~NkDL~~~l~~e~qk 282 (307)
T PF15112_consen 203 HIPEEDQRDGCESETDVYLSESQILEIEMELLKEKLQELYLQAEEQEVLPEEDSKRLEVLKEFLRNNKDLRSNLQEELQK 282 (307)
T ss_pred cCchhhccchhhhccchhhhHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 344444555555555555555666666666677777777777777777777777777666653 33 55666644
Q ss_pred HH
Q 020751 188 VR 189 (322)
Q Consensus 188 v~ 189 (322)
|+
T Consensus 283 L~ 284 (307)
T PF15112_consen 283 LD 284 (307)
T ss_pred HH
Confidence 43
No 419
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=33.25 E-value=2.8e+02 Score=26.79 Aligned_cols=65 Identities=11% Similarity=0.139 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhhhh-------hHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHH
Q 020751 157 VNKIVEISQATQEEVTILRGRSKLIG-------DEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 221 (322)
Q Consensus 157 lDeq~eis~~i~~eV~~v~~dls~ig-------~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~f~~ 221 (322)
+++..+-.+.+++.+..++..++... .-...+...+...+.++..++....-+..-...+|+|.+
T Consensus 276 ~~~l~~~i~~l~~~~~~~~~~l~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfg 347 (370)
T PF02181_consen 276 LDELEQDIKELEKGLEKIKKELEAIEKDEEDDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFG 347 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33344444444444444444443333 246777888999999999999999999999999999883
No 420
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=33.17 E-value=2.6e+02 Score=25.19 Aligned_cols=52 Identities=15% Similarity=0.340 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Q 020751 137 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 188 (322)
Q Consensus 137 ~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v 188 (322)
..+.+...+|..||..++..+.+.....+.++||...++--+.....-+..+
T Consensus 119 ~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l 170 (194)
T PF08614_consen 119 AELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKL 170 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666677777777777777777777777766666555444444444
No 421
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=33.07 E-value=5.2e+02 Score=26.02 Aligned_cols=15 Identities=7% Similarity=0.268 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHhcC
Q 020751 56 LLAEVSSVQQELSHV 70 (322)
Q Consensus 56 L~aQV~~LaqElr~L 70 (322)
|..|+..+++++...
T Consensus 166 l~~ql~~~~~~L~~a 180 (498)
T TIGR03007 166 IDEQIKTYEKKLEAA 180 (498)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777888887777765
No 422
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=33.04 E-value=1.7e+02 Score=25.33 Aligned_cols=69 Identities=17% Similarity=0.249 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHH---HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHH
Q 020751 119 RSLSDACNSVARQLEDVYSSISAAQR---QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS 187 (322)
Q Consensus 119 RnMsnAv~svtKqLeqVs~sLaaaKr---hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~ 187 (322)
..+.+-++.+.++-.+.+..|..+|+ +|+.|+=+|-.+++-..----.+..|-.+++..++.+..++..
T Consensus 54 ~~i~~~l~~L~~~~~~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~eEe~L~~~le~l~~~l~~ 125 (141)
T PF13874_consen 54 KEINDKLEELQKHDLETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSPEEEELRKRLEALEAQLNA 125 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHcC
No 423
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=32.98 E-value=2.1e+02 Score=30.81 Aligned_cols=182 Identities=12% Similarity=0.149 Sum_probs=100.2
Q ss_pred HHHHHHhhhhcCCCCCCCCcchHHHHHHHHHHHHH--HhcC-CCceEEEeCCCCCCCCchHHHH-HHHhhhheeeEEecc
Q 020751 32 TLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQQE--LSHV-PRSVIIETSSGSGTGAKKYGVI-VVIVAVGYGYVWWKG 107 (322)
Q Consensus 32 alk~l~K~lk~~d~s~s~s~~~~dL~aQV~~LaqE--lr~L-sR~ITVvn~~ssg~gg~~y~l~-a~iGavGYgYmwWKG 107 (322)
.|++-++-+++-++.++ .+..|..+-++|.+= |.+. .+-+..+++. +...+.+..+ -+...+.+ .
T Consensus 189 ~L~fq~~Ele~~~l~~g---E~e~L~~e~~rLsn~ekl~~~~~~a~~~L~ge--~~~~~~~~~l~~a~~~l~~------~ 257 (557)
T COG0497 189 LLQFQLEELEELNLQPG---EDEELEEERKRLSNSEKLAEAIQNALELLSGE--DDTVSALSLLGRALEALED------L 257 (557)
T ss_pred HHHHHHHHHHhcCCCCc---hHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHHHHH------h
Confidence 34444554555454443 122277777766542 2332 4555566655 2222334443 24444432 0
Q ss_pred CCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH---HhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhH
Q 020751 108 WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 184 (322)
Q Consensus 108 wsfSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLs---qRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~D 184 (322)
-.+.. .=+.+.+.++..--+|+.++..|...-..|. +|++.+..+|.....+.+--.-.+.++-.-..++..+
T Consensus 258 ~~~d~----~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~e 333 (557)
T COG0497 258 SEYDG----KLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEE 333 (557)
T ss_pred hccCh----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 11111 1133444444444555566666666666665 4899999998888888777666666666666666666
Q ss_pred HHHHHHH---HHHHHHHHHHhhhhhhHHhHHHHHHH-HHHHhhccCCC
Q 020751 185 FQSVRDI---VQTLESKLIEIEGKQDITTLGVKKLC-DRARELENGRP 228 (322)
Q Consensus 185 v~~v~~~---V~~Le~Ki~~iE~kQd~Tn~GV~~LC-~f~~~~~~~~~ 228 (322)
++.+... ...||.++..+..+=..+..-+-..= +++..++..-.
T Consensus 334 l~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~v~ 381 (557)
T COG0497 334 LAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKEVT 381 (557)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666654 66788888887776555555544442 34444444333
No 424
>PF14182 YgaB: YgaB-like protein
Probab=32.92 E-value=2.8e+02 Score=22.85 Aligned_cols=47 Identities=13% Similarity=0.316 Sum_probs=31.5
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHH-----HHHHhhcchhhhhhHHHHHHHHHH
Q 020751 147 SSKITSVDRDVNKIVEISQATQE-----EVTILRGRSKLIGDEFQSVRDIVQ 193 (322)
Q Consensus 147 sqRId~vD~klDeq~eis~~i~~-----eV~~v~~dls~ig~Dv~~v~~~V~ 193 (322)
.-++=.|-..||-|.+|-++..+ +...++..+.+...+++.||.++.
T Consensus 13 MD~LL~LQsElERCqeIE~eL~~l~~ea~l~~i~~EI~~mkk~Lk~Iq~~Fe 64 (79)
T PF14182_consen 13 MDKLLFLQSELERCQEIEKELKELEREAELHSIQEEISQMKKELKEIQRVFE 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677788888888777654 355666666777777777776654
No 425
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=32.87 E-value=1.2e+02 Score=27.27 Aligned_cols=51 Identities=18% Similarity=0.320 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH
Q 020751 121 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT 172 (322)
Q Consensus 121 MsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~ 172 (322)
+.++|..+-..+. +.+......++|.++++.+..+|+.+.++-..|.++..
T Consensus 38 v~~~v~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~el~~le~~k~~id~~A~ 88 (180)
T PF04678_consen 38 VKEAVHRLLPLLN-VEEYQNSRERQLRKRLEELRQELAPLEKIKQEIDEKAE 88 (180)
T ss_pred HHHHHHHHhcccc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554443322 33444566677888888888888888877777777663
No 426
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=32.83 E-value=1.3e+02 Score=27.97 Aligned_cols=27 Identities=15% Similarity=0.305 Sum_probs=15.1
Q ss_pred HHHHHHHhhcchhhhhhHHHHHHHHHH
Q 020751 167 TQEEVTILRGRSKLIGDEFQSVRDIVQ 193 (322)
Q Consensus 167 i~~eV~~v~~dls~ig~Dv~~v~~~V~ 193 (322)
+++++++++.+++.+...++.+.+.|.
T Consensus 167 ie~~L~~v~~eIe~~~~~~~~l~~~v~ 193 (262)
T PF14257_consen 167 IERELSRVRSEIEQLEGQLKYLDDRVD 193 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444555556666666666655555543
No 427
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=32.71 E-value=3.3e+02 Score=29.23 Aligned_cols=59 Identities=17% Similarity=0.287 Sum_probs=43.2
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 020751 116 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 174 (322)
Q Consensus 116 VTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v 174 (322)
+.|..+-..-..++.++.++++.|...++.+..+|+.--+++++..+-...+.+++..+
T Consensus 139 a~R~~vl~~A~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~~~ 197 (627)
T PRK06665 139 AERQVVLERAQSLGERIHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIVKS 197 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45888888888999999999999999998888888665555555555555555555443
No 428
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=32.39 E-value=3.7e+02 Score=29.36 Aligned_cols=59 Identities=12% Similarity=0.301 Sum_probs=39.0
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 020751 116 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 174 (322)
Q Consensus 116 VTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v 174 (322)
+.|..+-..-+.+..++.++++.|...++.+.++|+..-++++...+-+..+.+++..+
T Consensus 127 aaRq~vl~~A~~La~~fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI~~~ 185 (676)
T PRK05683 127 AARQLLLTQAQGLSKRFNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQIAQA 185 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666667777777777777777777777777777666555555555555555555443
No 429
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=32.36 E-value=2.1e+02 Score=26.34 Aligned_cols=80 Identities=15% Similarity=0.081 Sum_probs=44.3
Q ss_pred chhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHH-HHHHHHHHHhhcchhhhhhHHHHHHH
Q 020751 112 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS-QATQEEVTILRGRSKLIGDEFQSVRD 190 (322)
Q Consensus 112 DlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis-~~i~~eV~~v~~dls~ig~Dv~~v~~ 190 (322)
|-|--+|+.|++++..+++.|..++..=..+-+-|+.=+..+.+-.+...++. .+-.++...+...|...-.++++++.
T Consensus 28 ~~lv~~rk~la~~~~~fs~al~~L~~~E~~~~~~l~~~l~~lse~~e~i~~~~~~~a~~d~~~Lg~~L~~Y~r~i~a~K~ 107 (198)
T cd07630 28 LKIVNTEQRLANALGHLSSSLQLCVGLDEASVVALNRLCTKLSEALEEAKENIEVVAGNNENTLGLTLDLYSRYSESEKD 107 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 34556788999999999988887765432222122222222222222222222 23345566666666666677777665
Q ss_pred H
Q 020751 191 I 191 (322)
Q Consensus 191 ~ 191 (322)
+
T Consensus 108 ~ 108 (198)
T cd07630 108 M 108 (198)
T ss_pred H
Confidence 5
No 430
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=31.82 E-value=4.8e+02 Score=28.07 Aligned_cols=74 Identities=20% Similarity=0.229 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHH---hHhhhhhhHHH------HHHH----------------HHHHHHHHHHhhcchhhhhhHHHHH
Q 020751 134 DVYSSISAAQRQLSS---KITSVDRDVNK------IVEI----------------SQATQEEVTILRGRSKLIGDEFQSV 188 (322)
Q Consensus 134 qVs~sLaaaKrhLsq---RId~vD~klDe------q~ei----------------s~~i~~eV~~v~~dls~ig~Dv~~v 188 (322)
+.-|.+.-|++||.- |||...-++|. -.|+ +-..+.|+.+++-....-..|++.+
T Consensus 249 n~~E~~~lA~r~l~~~kKe~de~k~~~~l~~~l~~keeL~~s~~~e~~i~qs~~kstas~~E~ee~rve~~~s~ed~~~~ 328 (554)
T KOG4677|consen 249 NELEVRQLALRHLIHFKKEIDEQKLLLDLFRFLDRKEELALSHYREHLIIQSPDKSTASRKEFEETRVELPFSAEDSAHI 328 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhccCCCCcchhHHHHHHHHHhcccccHHHHHHH
Confidence 355677788888764 44443333333 1122 1233678889999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhh
Q 020751 189 RDIVQTLESKLIEIEGKQD 207 (322)
Q Consensus 189 ~~~V~~Le~Ki~~iE~kQd 207 (322)
+.-+..|+..|..||+.|.
T Consensus 329 q~q~~~Lrs~~~d~EAq~r 347 (554)
T KOG4677|consen 329 QDQYTLLRSQIIDIEAQDR 347 (554)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998753
No 431
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=31.56 E-value=1.4e+02 Score=22.72 Aligned_cols=38 Identities=11% Similarity=0.327 Sum_probs=26.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH
Q 020751 125 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 162 (322)
Q Consensus 125 v~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~e 162 (322)
...+-.+.+.+|+.|-.-=.+++.|||.|...+.+...
T Consensus 12 L~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~~ 49 (54)
T PF06825_consen 12 LQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADLMT 49 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34455556678888888888999999999988877654
No 432
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=31.53 E-value=3.9e+02 Score=27.29 Aligned_cols=37 Identities=14% Similarity=0.311 Sum_probs=22.6
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhh
Q 020751 116 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITS 152 (322)
Q Consensus 116 VTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~ 152 (322)
+.|..+-.+-..+++++.+++..|...++.+...|+.
T Consensus 127 ~~r~~vl~~a~~la~~~n~~~~~l~~~~~~~~~~i~~ 163 (456)
T PRK07191 127 PMRQQVIESANAMALRFNNVNNFIVQQKKSIGQQRDA 163 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666666555543
No 433
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=31.53 E-value=2.9e+02 Score=22.58 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=14.1
Q ss_pred HHHHhhcchhhhhhHHHHHHHHHHHH
Q 020751 170 EVTILRGRSKLIGDEFQSVRDIVQTL 195 (322)
Q Consensus 170 eV~~v~~dls~ig~Dv~~v~~~V~~L 195 (322)
++.+.+.+..+...|++....-+..+
T Consensus 95 ~~~~~~k~~~~~~~~yd~~~~k~~~~ 120 (194)
T cd07307 95 EIKKRRKKLDKARLDYDAAREKLKKL 120 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555566555555554
No 434
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=31.45 E-value=4.2e+02 Score=24.45 Aligned_cols=55 Identities=13% Similarity=0.274 Sum_probs=27.5
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 020751 146 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 200 (322)
Q Consensus 146 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 200 (322)
|.+||......|.+..+-.....+++..+..-.+++...+...+.....++.++.
T Consensus 83 Leq~l~~~~~~L~~~q~~l~~~~~~l~~~~~~p~~aq~~l~~~~~~l~ei~~~L~ 137 (240)
T PF12795_consen 83 LEQRLSQEQAQLQELQEQLQQENSQLIEIQTRPERAQQQLSEARQRLQEIRNQLQ 137 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555555555555555555555555555444444444444444444444444444
No 435
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=31.30 E-value=1.1e+02 Score=26.26 Aligned_cols=53 Identities=9% Similarity=0.240 Sum_probs=38.5
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHH
Q 020751 143 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 195 (322)
Q Consensus 143 KrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~L 195 (322)
|+.|-.++..+...+.+..+-...++++|.++-+.=....-+-+.++..+..+
T Consensus 3 k~elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 3 KKEIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788888888888888887777888887777776666666666666555544
No 436
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=31.27 E-value=4.2e+02 Score=29.72 Aligned_cols=91 Identities=15% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH-HHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHh
Q 020751 132 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE-VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITT 210 (322)
Q Consensus 132 LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~e-V~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn 210 (322)
|.+--++....|-.+-.|+.++|.-|.+|+.-....++| --.+++-+..+-.+.++++ ..||.||.++...-..+.
T Consensus 29 lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s~e~e~~~---~~le~~l~e~~~~l~~~~ 105 (769)
T PF05911_consen 29 LKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKSKEWEKIK---SELEAKLAELSKRLAESA 105 (769)
T ss_pred HHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHhHHHHHHH---HHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHhhcc
Q 020751 211 LGVKKLCDRARELEN 225 (322)
Q Consensus 211 ~GV~~LC~f~~~~~~ 225 (322)
.=-..|+..+...++
T Consensus 106 ~e~~~l~~~l~~~~~ 120 (769)
T PF05911_consen 106 AENSALSKALQEKEK 120 (769)
T ss_pred hhhHHHHHHHHHHHH
No 437
>PHA02414 hypothetical protein
Probab=31.25 E-value=1.4e+02 Score=25.84 Aligned_cols=66 Identities=18% Similarity=0.283 Sum_probs=34.0
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHH
Q 020751 146 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 221 (322)
Q Consensus 146 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~f~~ 221 (322)
|-.||+++.+|+++=.=+- ++|-......+..++.||-.|+..+.-=++||-+--.-|..|-+-+.
T Consensus 9 Lv~~v~~ledKiQ~Gelt~----------kgdn~eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Lee~i~ 74 (111)
T PHA02414 9 LVSQVETLEDKIQEGELTD----------KGDNKELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLEEKIS 74 (111)
T ss_pred HHHHHHHHHHHHhcCcccc----------CCchHHHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHHHHHH
Confidence 4566777777765432222 22333444445556666666666665555555554444444433333
No 438
>COG1392 Phosphate transport regulator (distant homolog of PhoU) [Inorganic ion transport and metabolism]
Probab=31.23 E-value=4.5e+02 Score=24.67 Aligned_cols=41 Identities=15% Similarity=0.245 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhh-------hhHH--hHHHHHHHHHHHhhcc
Q 020751 185 FQSVRDIVQTLESKLIEIEGK-------QDIT--TLGVKKLCDRARELEN 225 (322)
Q Consensus 185 v~~v~~~V~~Le~Ki~~iE~k-------Qd~T--n~GV~~LC~f~~~~~~ 225 (322)
+..+..-|..+|...|.|+.+ -+.. -..++++|++++.+++
T Consensus 149 ~~~i~~eI~~~E~e~D~i~~~l~k~Lf~~e~~~~~~~~~~~~~i~~~i~~ 198 (217)
T COG1392 149 LLEIIKEIEALEHECDDIQRELLKKLFSLETEINPIDVIILKEIIEKIED 198 (217)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHH
Confidence 344444456667666666643 1222 2677888888876543
No 439
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=31.18 E-value=3.9e+02 Score=28.91 Aligned_cols=37 Identities=11% Similarity=0.261 Sum_probs=14.1
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHH
Q 020751 149 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF 185 (322)
Q Consensus 149 RId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv 185 (322)
+|+.+...++....-.+++.+++.+.+.....+..++
T Consensus 343 ~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~ 379 (594)
T PF05667_consen 343 QIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEEL 379 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333
No 440
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=31.06 E-value=2.7e+02 Score=22.15 Aligned_cols=74 Identities=15% Similarity=0.179 Sum_probs=56.6
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 020751 142 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 216 (322)
Q Consensus 142 aKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~L 216 (322)
+-..+++.+.+.-..|.+..+-++.+-+++.+=...+...+++.+.++..+..=...|..++ +++.+..-+.++
T Consensus 2 ~s~~vT~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~-r~~~~D~~li~~ 75 (92)
T PF03908_consen 2 ASSDVTESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLE-RRDKTDRILIFF 75 (92)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHH
Confidence 34678888999999999999999999999999999999999998888877766655555554 455555544443
No 441
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=31.06 E-value=4.1e+02 Score=24.22 Aligned_cols=32 Identities=13% Similarity=0.235 Sum_probs=24.2
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 020751 113 MMFATRRSLSDACNSVARQLEDVYSSISAAQR 144 (322)
Q Consensus 113 lMfVTKRnMsnAv~svtKqLeqVs~sLaaaKr 144 (322)
-++-.-..+.+-++.+-+.++.+.+.|..+|.
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~ 97 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKK 97 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677777788888888888888888777753
No 442
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=31.03 E-value=4.6e+02 Score=24.71 Aligned_cols=33 Identities=6% Similarity=0.202 Sum_probs=24.0
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 020751 117 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSK 149 (322)
Q Consensus 117 TKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqR 149 (322)
.++.+.+....+-|++.+.+..|..+|+..-++
T Consensus 113 e~K~~e~~~~kaqk~~~~~~~~l~kaKk~Y~~~ 145 (258)
T cd07655 113 ETKEAEDGFAKAQKPWAKLLKKVEKAKKAYHAA 145 (258)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 367777777777778888888888887765433
No 443
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=30.98 E-value=2.9e+02 Score=22.48 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHH
Q 020751 165 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 215 (322)
Q Consensus 165 ~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~ 215 (322)
....++|..+..|-+++-.+++....-...||.-=.+|...=+.+...|..
T Consensus 35 ~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~ 85 (89)
T PF13747_consen 35 DELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRA 85 (89)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666666666666666666666666666555555555543
No 444
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=30.77 E-value=1.6e+02 Score=22.72 Aligned_cols=51 Identities=10% Similarity=0.088 Sum_probs=28.8
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 020751 150 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 200 (322)
Q Consensus 150 Id~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 200 (322)
+..++.+|-.....-+.+.+.-......+.++..=++-+++.+-.|..|||
T Consensus 3 ~k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~mv~L~kKiD 53 (57)
T PF02346_consen 3 IKDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYMVILAKKID 53 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444444444444444444444445556666667777777777777765
No 445
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=30.75 E-value=3.6e+02 Score=31.52 Aligned_cols=86 Identities=17% Similarity=0.240 Sum_probs=44.3
Q ss_pred cCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 020751 110 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 189 (322)
Q Consensus 110 fSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 189 (322)
+-++++ ||+ -+.+|..++.-+-.-|+-.+..+++-=..++....| .+.+.+++.+..-.++.|..++++..
T Consensus 668 l~ei~~--~~~---e~~~v~~~i~~le~~~~~~~~~~~~~k~~l~~~~~E----l~~~~~~i~~~~p~i~~i~r~l~~~e 738 (1141)
T KOG0018|consen 668 LKEIQK--RRK---EVSSVESKIHGLEMRLKYSKLDLEQLKRSLEQNELE----LQRTESEIDEFGPEISEIKRKLQNRE 738 (1141)
T ss_pred HHHHHH--hhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhCchHHHHHHHHHHHH
Confidence 345566 444 566677777766666766666665532333322222 23334444444444455555555555
Q ss_pred HHHHHHHHHHHHhhh
Q 020751 190 DIVQTLESKLIEIEG 204 (322)
Q Consensus 190 ~~V~~Le~Ki~~iE~ 204 (322)
..+..|+.++..+|.
T Consensus 739 ~~~~~L~~~~n~ved 753 (1141)
T KOG0018|consen 739 GEMKELEERMNKVED 753 (1141)
T ss_pred HHHHHHHHHHHHHHH
Confidence 555555555554443
No 446
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=30.73 E-value=3e+02 Score=22.50 Aligned_cols=81 Identities=11% Similarity=0.194 Sum_probs=56.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020751 125 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 204 (322)
Q Consensus 125 v~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~ 204 (322)
....-..+++-.+.|......|...+.+.|.=+.+..+=...-......-...-.....++..++.-+..|...+..++.
T Consensus 23 ~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~ 102 (126)
T PF13863_consen 23 IERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEE 102 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888888898888888888888777666555555555555566666666666666666666666655
Q ss_pred h
Q 020751 205 K 205 (322)
Q Consensus 205 k 205 (322)
+
T Consensus 103 ~ 103 (126)
T PF13863_consen 103 K 103 (126)
T ss_pred H
Confidence 4
No 447
>PRK15396 murein lipoprotein; Provisional
Probab=30.72 E-value=1.7e+02 Score=23.67 Aligned_cols=7 Identities=0% Similarity=-0.073 Sum_probs=2.6
Q ss_pred HHhHHHH
Q 020751 208 ITTLGVK 214 (322)
Q Consensus 208 ~Tn~GV~ 214 (322)
++|.-++
T Consensus 64 raN~RlD 70 (78)
T PRK15396 64 RANQRLD 70 (78)
T ss_pred HHHHHHH
Confidence 3333333
No 448
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=30.72 E-value=2.3e+02 Score=26.69 Aligned_cols=55 Identities=13% Similarity=0.381 Sum_probs=0.0
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhH
Q 020751 144 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 208 (322)
Q Consensus 144 rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~ 208 (322)
++|..-+-.|...|.|-+|-+++|++-. ..|++.+|..|+-+-.==..|++|-|+
T Consensus 50 ~eLkNeLREVREELkEKmeEIKQIKdiM----------DKDFDKL~EFVEIMKeMQkDMDEKMDv 104 (205)
T PF15079_consen 50 QELKNELREVREELKEKMEEIKQIKDIM----------DKDFDKLHEFVEIMKEMQKDMDEKMDV 104 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHhHHHhhhH
No 449
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=30.70 E-value=3.1e+02 Score=22.69 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=20.7
Q ss_pred HhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhhc
Q 020751 173 ILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELE 224 (322)
Q Consensus 173 ~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~f~~~~~ 224 (322)
.+...++.+...-+.++..+..-..+|...-....+... ...++.|+...+
T Consensus 76 ~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~~~~~~~-~~~l~~wl~~~e 126 (213)
T cd00176 76 EIQERLEELNQRWEELRELAEERRQRLEEALDLQQFFRD-ADDLEQWLEEKE 126 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 334444444444444444444444444433322222222 222556665443
No 450
>KOG0517 consensus Beta-spectrin [Cytoskeleton]
Probab=30.61 E-value=3e+02 Score=34.31 Aligned_cols=72 Identities=21% Similarity=0.250 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHH-----------------HHHHHHHHHHHHHHHhhcchhhhhhH---HHHHHHHHHHH
Q 020751 136 YSSISAAQRQLSSKITSVDRDVN-----------------KIVEISQATQEEVTILRGRSKLIGDE---FQSVRDIVQTL 195 (322)
Q Consensus 136 s~sLaaaKrhLsqRId~vD~klD-----------------eq~eis~~i~~eV~~v~~dls~ig~D---v~~v~~~V~~L 195 (322)
|+.|.....||.+|-+++....+ +|.|....|++. +.+-+++..++.| |..++....+|
T Consensus 918 sd~I~~~Q~~Ln~rW~~l~~l~~qk~~~L~~a~~V~~f~~eC~et~~wi~dK-~~~~e~t~~~~~Dl~gv~alqrrL~~l 996 (2473)
T KOG0517|consen 918 SDEILARQDKLNQRWQQLRELVDQKKVALESALRVETFHLECEETRVWIRDK-TRVLESTDRLGNDLAGVMALQRRLQGL 996 (2473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH-HHHHHhccccCcchHHHHHHHHHHhhh
Confidence 45678889999999887765444 466667777654 4455666777777 44556667777
Q ss_pred HHHHHHhhhhhhH
Q 020751 196 ESKLIEIEGKQDI 208 (322)
Q Consensus 196 e~Ki~~iE~kQd~ 208 (322)
|.++.-||.|++.
T Consensus 997 Erdl~aie~kv~~ 1009 (2473)
T KOG0517|consen 997 ERDLAAIEAKVAA 1009 (2473)
T ss_pred hhHHHHHHHHHHH
Confidence 7777777766543
No 451
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=30.54 E-value=2.2e+02 Score=27.87 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=13.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhhhhhH
Q 020751 128 VARQLEDVYSSISAAQRQLSSKITSVDRDV 157 (322)
Q Consensus 128 vtKqLeqVs~sLaaaKrhLsqRId~vD~kl 157 (322)
.-|-|||=-+.|.+..++|-+-++.+..|+
T Consensus 128 ~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~ 157 (254)
T KOG2196|consen 128 DQKRLDQELEFILSQQQELEDLLDPLETKL 157 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444433
No 452
>KOG4670 consensus Uncharacterized conserved membrane protein [Function unknown]
Probab=30.47 E-value=27 Score=37.34 Aligned_cols=82 Identities=12% Similarity=0.174 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHH--HhhhhhhHHhH
Q 020751 134 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI--EIEGKQDITTL 211 (322)
Q Consensus 134 qVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~--~iE~kQd~Tn~ 211 (322)
+.+-.+. .=.-|.|.|+.|++.++++.+..+.=--.+...+.++..|..|..... ...|+-=+- ....+|++.-+
T Consensus 368 R~win~t-iL~plvqeI~~vn~qfr~q~a~p~lqig~~sV~~lk~aAi~~~~~~~~--~p~lp~llpfLd~~snqeYlvq 444 (602)
T KOG4670|consen 368 RLWINLT-ILDPLVQEIRTVNQQFRQQQAQPQLQIGLISVMQLKVAAISEHRRLQG--LPKLPWLLPFLDRSSNQEYLVQ 444 (602)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHhcCccceechhhHHHHHHHHHHHhhhhcc--CCccchhhhhccCCccHHHHHH
Confidence 3444333 445688999999999998777766555556666666666655532211 111111111 34567999999
Q ss_pred HHHHHHH
Q 020751 212 GVKKLCD 218 (322)
Q Consensus 212 GV~~LC~ 218 (322)
-|+.||+
T Consensus 445 RIKeLaq 451 (602)
T KOG4670|consen 445 RIKELAQ 451 (602)
T ss_pred HHHHHhh
Confidence 9999998
No 453
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=30.43 E-value=5.2e+02 Score=28.49 Aligned_cols=74 Identities=14% Similarity=0.289 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh-----------cchhhhhhHHHHHHHHHHHHHHHH
Q 020751 131 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR-----------GRSKLIGDEFQSVRDIVQTLESKL 199 (322)
Q Consensus 131 qLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~-----------~dls~ig~Dv~~v~~~V~~Le~Ki 199 (322)
+.-.+..-|.+.+..+..+++-+++|++.+....+.++++.++.+ ..+.-|=.|++.=++.+..||..+
T Consensus 179 ~~~e~e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~ 258 (629)
T KOG0963|consen 179 EWAEREAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREV 258 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555555566666666655555555555544444 446677778888888888888877
Q ss_pred HHhhh
Q 020751 200 IEIEG 204 (322)
Q Consensus 200 ~~iE~ 204 (322)
..+..
T Consensus 259 e~L~~ 263 (629)
T KOG0963|consen 259 EQLRE 263 (629)
T ss_pred HHHHH
Confidence 76653
No 454
>PRK10778 dksA RNA polymerase-binding transcription factor; Provisional
Probab=30.33 E-value=1.2e+02 Score=26.97 Aligned_cols=47 Identities=17% Similarity=0.066 Sum_probs=30.0
Q ss_pred eccCCcCchhhhhhhh---HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHh
Q 020751 105 WKGWKLPDMMFATRRS---LSDACNSVARQLEDVYSSISAAQRQLSSKIT 151 (322)
Q Consensus 105 WKGwsfSDlMfVTKRn---MsnAv~svtKqLeqVs~sLaaaKrhLsqRId 151 (322)
||--|+++|--||--+ +.+..-=-.++|+..-..|..-|..|..+|.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~yM~~~ql~~fr~~L~~~r~eL~~~i~ 56 (151)
T PRK10778 7 RKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFKRILEAWRNQLRDEVD 56 (151)
T ss_pred cccccchhccccccccccCCchhhhhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887766 2222222235777777666666666665554
No 455
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=30.33 E-value=7.4e+02 Score=26.95 Aligned_cols=23 Identities=9% Similarity=0.336 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHH
Q 020751 139 ISAAQRQLSSKITSVDRDVNKIV 161 (322)
Q Consensus 139 LaaaKrhLsqRId~vD~klDeq~ 161 (322)
|..=|+|...||..|..+|-+.+
T Consensus 41 L~eEk~~~~~~V~eLE~sL~eLk 63 (617)
T PF15070_consen 41 LKEEKEHDISRVQELERSLSELK 63 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445666677777777665543
No 456
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=30.23 E-value=2.5e+02 Score=28.46 Aligned_cols=25 Identities=12% Similarity=0.356 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q 020751 121 LSDACNSVARQLEDVYSSISAAQRQ 145 (322)
Q Consensus 121 MsnAv~svtKqLeqVs~sLaaaKrh 145 (322)
+.+..+.+.+++++..+.+...+++
T Consensus 332 l~~~~~~l~~~~~~~~~~l~~l~~~ 356 (451)
T PF03961_consen 332 LKEKLEELEEELEELKEELEKLKKN 356 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443333
No 457
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=30.22 E-value=5.8e+02 Score=27.70 Aligned_cols=92 Identities=18% Similarity=0.281 Sum_probs=56.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHH-------HHHHHHHhhcchhhhhhHHHHHHHHHHHHHHH
Q 020751 126 NSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQA-------TQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 198 (322)
Q Consensus 126 ~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~-------i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 198 (322)
+.+-.+++.+++-+..|. ++++.|+.++.|-.+++.=..- ++..-.+--+.+++...+++....-+..|-.+
T Consensus 274 ~~lk~~n~~l~e~i~ea~-k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~ 352 (622)
T COG5185 274 ANLKTQNDNLYEKIQEAM-KISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSN 352 (622)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhh
Confidence 334445666677777764 4788888887776555443333 33333333345666666666666667777777
Q ss_pred HHHhh---hhhhHHhHHHHHHHH
Q 020751 199 LIEIE---GKQDITTLGVKKLCD 218 (322)
Q Consensus 199 i~~iE---~kQd~Tn~GV~~LC~ 218 (322)
++++. .||++...-+....+
T Consensus 353 ~d~L~~q~~kq~Is~e~fe~mn~ 375 (622)
T COG5185 353 IDELHKQLRKQGISTEQFELMNQ 375 (622)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHH
Confidence 77766 467777776666643
No 458
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=30.17 E-value=1.6e+02 Score=24.01 Aligned_cols=42 Identities=12% Similarity=0.174 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhhccC
Q 020751 185 FQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELENG 226 (322)
Q Consensus 185 v~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~f~~~~~~~ 226 (322)
+..+|.....|=.+++.+..--+---..=.+|++|++.+...
T Consensus 25 i~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 25 ILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444555544433333333456899999888553
No 459
>PF14728 PHTB1_C: PTHB1 C-terminus
Probab=30.12 E-value=4.9e+02 Score=26.47 Aligned_cols=77 Identities=19% Similarity=0.307 Sum_probs=58.0
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh--------HhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHH
Q 020751 115 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK--------ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 186 (322)
Q Consensus 115 fVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqR--------Id~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~ 186 (322)
|-.|+++. ...+.|++.+.-.++-.|+|-.| ++++|-=||+...-.-..-|++.+++.++.+-+.++.
T Consensus 210 ~~lr~~~~----~~~~~L~~~a~QfRaIQrrlL~r~kd~~p~~l~~L~~LLe~ty~~l~~~~d~~~~~~~~l~~a~~~L~ 285 (377)
T PF14728_consen 210 FELRQELK----ELEEELDERAQQFRAIQRRLLTRFKDKNPAPLDNLDTLLEGTYRQLIALADEIEELQANLKRAGASLS 285 (377)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 44555444 45566666777777777777755 5788888998888888888999999999999999988
Q ss_pred HHHHHHHHH
Q 020751 187 SVRDIVQTL 195 (322)
Q Consensus 187 ~v~~~V~~L 195 (322)
..-+++..|
T Consensus 286 ~~~~Ll~~L 294 (377)
T PF14728_consen 286 CATQLLILL 294 (377)
T ss_pred HHHHHHHHH
Confidence 877766443
No 460
>PF13514 AAA_27: AAA domain
Probab=29.98 E-value=3e+02 Score=31.25 Aligned_cols=92 Identities=14% Similarity=0.267 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 020751 137 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 216 (322)
Q Consensus 137 ~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~L 216 (322)
+.+......+..+|+.+..++++..+-...++.++..+.++ +++..+..-...++.+|.+....=-....+...|
T Consensus 892 ~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~~-----~~~a~l~~e~e~~~a~l~~~~~~~~~~~la~~lL 966 (1111)
T PF13514_consen 892 DELEAELEELEEELEELEEELEELQEERAELEQELEALEGD-----DDAAELEQEREEAEAELEELAEEWAALRLAAELL 966 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhccCCCcccee
Q 020751 217 CDRARELENGRPTELVQ 233 (322)
Q Consensus 217 C~f~~~~~~~~~~~~~Q 233 (322)
-+..+.......+.+++
T Consensus 967 ~~a~~~~r~~~~p~vl~ 983 (1111)
T PF13514_consen 967 EEAIERYREERQPPVLA 983 (1111)
T ss_pred HHHHHHHHHHhhHHHHH
No 461
>PRK09458 pspB phage shock protein B; Provisional
Probab=29.97 E-value=36 Score=27.59 Aligned_cols=44 Identities=7% Similarity=0.300 Sum_probs=28.5
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 020751 113 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 159 (322)
Q Consensus 113 lMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDe 159 (322)
|=|.||+.-+.. ++..=++-=+.|...-+++.+||+.|.+=||.
T Consensus 24 LHY~sk~~~~~~---Ls~~d~~~L~~L~~~A~rm~~RI~tLE~ILDa 67 (75)
T PRK09458 24 LHYRSKRQGSQG---LSQEEQQRLAQLTEKAERMRERIQALEAILDA 67 (75)
T ss_pred HhhcccccCCCC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 458888775542 33333333444555667899999999887774
No 462
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=29.88 E-value=5.8e+02 Score=25.54 Aligned_cols=70 Identities=16% Similarity=0.261 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchh---hhhhHHHHHHHHHHHHHHHHHH
Q 020751 132 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK---LIGDEFQSVRDIVQTLESKLIE 201 (322)
Q Consensus 132 LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls---~ig~Dv~~v~~~V~~Le~Ki~~ 201 (322)
|-.--.++.+-|+.+..+|.-+-.+-++..+......+++.+++.+.. .-|.++.++...++-||-+.-.
T Consensus 53 ~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~~~~~l~e~~~~~~~~~~~~~~ler~i~~Le~~~~T 125 (294)
T COG1340 53 LREKAQELREERDEINEEVQELKEKRDEINAKLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQT 125 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHh
Confidence 333445666777777778888888888877777777777777777776 5577777777666666665543
No 463
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=29.84 E-value=5.6e+02 Score=25.34 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhh
Q 020751 164 SQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAREL 223 (322)
Q Consensus 164 s~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~f~~~~ 223 (322)
.+..+.|+....+++.+...++..+++-+...-+||.+++.+--.-..-|.++=-=++++
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf 261 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKF 261 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555555555555666666666666666666655555444454444334443
No 464
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=29.83 E-value=5.6e+02 Score=25.32 Aligned_cols=51 Identities=24% Similarity=0.208 Sum_probs=21.2
Q ss_pred hhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhhc
Q 020751 174 LRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELE 224 (322)
Q Consensus 174 v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~f~~~~~ 224 (322)
+...++....+++.++.-...||....+++.+-+.-..-|+.|-.-...++
T Consensus 154 L~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 154 LLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 333333333344444444444444444444444433334444444333333
No 465
>COG4980 GvpP Gas vesicle protein [General function prediction only]
Probab=29.81 E-value=3.8e+02 Score=23.35 Aligned_cols=19 Identities=5% Similarity=0.209 Sum_probs=9.2
Q ss_pred hhhhhhHHHHHHHHHHHHH
Q 020751 178 SKLIGDEFQSVRDIVQTLE 196 (322)
Q Consensus 178 ls~ig~Dv~~v~~~V~~Le 196 (322)
.++..+|++..+..+..++
T Consensus 92 ~~~l~~ei~~~~~~~sd~~ 110 (115)
T COG4980 92 IERLKSEIEDLQEAISDET 110 (115)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445555555554444443
No 466
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=29.58 E-value=5.2e+02 Score=24.88 Aligned_cols=82 Identities=12% Similarity=0.224 Sum_probs=68.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH----------HHHHHHHHHHHhhcchhhhhhHHHHHHHH
Q 020751 122 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE----------ISQATQEEVTILRGRSKLIGDEFQSVRDI 191 (322)
Q Consensus 122 snAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~e----------is~~i~~eV~~v~~dls~ig~Dv~~v~~~ 191 (322)
++-+|.+-+.|+.+......+....+.||+.+..||-.|.+ ..+..+.++..+-...++-.+-...-+++
T Consensus 20 td~IN~lE~~L~~ar~~fr~~l~e~~~kL~~~~kkLg~~I~karPYyea~~~a~~aq~e~q~Aa~~yerA~~~h~aAKe~ 99 (239)
T PF05276_consen 20 TDEINRLENELDEARATFRRLLSESTKKLNELAKKLGSCIEKARPYYEARRKAKEAQQEAQKAALQYERANSMHAAAKEM 99 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577788899999999999999999999999999988765 44677788888888888888888999999
Q ss_pred HHHHHHHHHHhh
Q 020751 192 VQTLESKLIEIE 203 (322)
Q Consensus 192 V~~Le~Ki~~iE 203 (322)
|.-+|..+..=.
T Consensus 100 v~laEq~l~~~~ 111 (239)
T PF05276_consen 100 VALAEQSLMSDS 111 (239)
T ss_pred HHHHHHHHhcCC
Confidence 999998887644
No 467
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.32 E-value=2.4e+02 Score=30.15 Aligned_cols=64 Identities=17% Similarity=0.198 Sum_probs=38.0
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020751 144 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 207 (322)
Q Consensus 144 rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd 207 (322)
+.|.+|+.-=|...+.-....+.|.++|++++..=...=--|...++.-..|+.+|=+|--||.
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad~~~KI~~~k~r~~~Ls~RiLRv~ikqe 400 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHADAVAKIEEAKNRHVELSHRILRVMIKQE 400 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888777777777777777777777777632222222344444444455555555444443
No 468
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=29.24 E-value=1.9e+02 Score=29.46 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=46.7
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhcchhh---hhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHH
Q 020751 149 KITSVDRDVNKIVEISQATQEEVTILRGRSKL---IGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRA 220 (322)
Q Consensus 149 RId~vD~klDeq~eis~~i~~eV~~v~~dls~---ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~f~ 220 (322)
+|-.+|.+.-+...-....+.+.+++...+.. -+.|.+.+..-+..|..+|..+|.+......-+..++.-+
T Consensus 29 ~i~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i 103 (425)
T PRK05431 29 ELLELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEELLLRI 103 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44455555555555555556665555555543 2236677777788888888888888888888777775543
No 469
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=29.12 E-value=4.7e+02 Score=28.27 Aligned_cols=94 Identities=13% Similarity=0.218 Sum_probs=42.1
Q ss_pred cCchhhhhhhhHHHHHHHHHHh-------HHHHHHHHHHHHHHHHH---hHhhhhhhHHHHHHHHHHHHHHHHHhhcchh
Q 020751 110 LPDMMFATRRSLSDACNSVARQ-------LEDVYSSISAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILRGRSK 179 (322)
Q Consensus 110 fSDlMfVTKRnMsnAv~svtKq-------LeqVs~sLaaaKrhLsq---RId~vD~klDeq~eis~~i~~eV~~v~~dls 179 (322)
+.++.=+-.....+++....+. +..+++.+...|+.+.. .....-.++++.......++.|..-++.+..
T Consensus 86 ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~ 165 (546)
T KOG0977|consen 86 IKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIK 165 (546)
T ss_pred hhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 3444444444444444444333 33333444443333322 2333334444444444445555555555555
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhh
Q 020751 180 LIGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 180 ~ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
.+.+|+.-|+.=...|..-|.++.
T Consensus 166 ~le~e~~~Lk~en~rl~~~l~~~r 189 (546)
T KOG0977|consen 166 ALEDELKRLKAENSRLREELARAR 189 (546)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHH
Confidence 555555555555555555554444
No 470
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=29.07 E-value=7e+02 Score=27.66 Aligned_cols=72 Identities=14% Similarity=0.195 Sum_probs=39.1
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHH--HHHHHhhhhhhHHhHHHHHHHHHHH
Q 020751 147 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE--SKLIEIEGKQDITTLGVKKLCDRAR 221 (322)
Q Consensus 147 sqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le--~Ki~~iE~kQd~Tn~GV~~LC~f~~ 221 (322)
..-++++.+.+.+|-- .+.+-+++++.-......=.+.=+.+|.-+. .++..+-.+-..|+.-...||.|++
T Consensus 35 ~~h~~~~~~e~~~~ln---~~~n~~~~i~~~~~e~~~l~e~~r~~V~~~~~~fr~~k~Y~sv~~t~~~~s~l~n~V~ 108 (742)
T COG5173 35 EHHDGNLSAEISKCLN---NILNISKRIYGLEEELKSLVEGKRRNVRVLKGFFRLVKDYRSVKMTCLAHSNLCNVVE 108 (742)
T ss_pred HhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444333 3333333333333333333333444554444 3566677788889999999999887
No 471
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=29.05 E-value=4.4e+02 Score=28.36 Aligned_cols=38 Identities=13% Similarity=0.108 Sum_probs=18.9
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchh
Q 020751 142 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 179 (322)
Q Consensus 142 aKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls 179 (322)
-|.|.++||+.|-.++.....=......|...++..++
T Consensus 414 Ik~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~ 451 (518)
T PF10212_consen 414 IKSYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLE 451 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666655555544434444444444433333
No 472
>COG2096 cob(I)alamin adenosyltransferase [Coenzyme transport and metabolism]
Probab=29.03 E-value=1.4e+02 Score=27.83 Aligned_cols=63 Identities=21% Similarity=0.223 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhH--HHHHHHHHHHHHHHHHHhhh
Q 020751 132 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE--FQSVRDIVQTLESKLIEIEG 204 (322)
Q Consensus 132 LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~D--v~~v~~~V~~Le~Ki~~iE~ 204 (322)
+|...+.|--|+.|+.. +++.++-..||+++..+..|++.-+ + ..--...|.-||..|++.+.
T Consensus 38 lDElNs~IG~A~~~~~~---------~~i~~~L~~IQ~~LF~lG~dLat~~-~~~~~i~~e~v~~LE~~id~y~~ 102 (184)
T COG2096 38 LDELNSFIGLARALLKD---------EDIRAILRRIQNDLFDLGADLATPE-EKPLRITEEDVKRLEKRIDAYNA 102 (184)
T ss_pred HHHHHHHHHHHHHhCCH---------HHHHHHHHHHHHHHHHhhhhhcCCC-ccccccCHHHHHHHHHHHHHHHh
Confidence 56777777777777654 7888888999999999999988776 2 11223445666666665543
No 473
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=29.00 E-value=3.6e+02 Score=29.13 Aligned_cols=75 Identities=15% Similarity=0.267 Sum_probs=54.0
Q ss_pred hhhhhHHHHHHHHHHhHHHH----------HHHHHHHH---HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhh
Q 020751 116 ATRRSLSDACNSVARQLEDV----------YSSISAAQ---RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 182 (322)
Q Consensus 116 VTKRnMsnAv~svtKqLeqV----------s~sLaaaK---rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig 182 (322)
.|-|.-+.+...++|-=+++ -..+..++ ++...||..+..++.-.+.-.+.+.+|+..++...++|.
T Consensus 103 e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~ 182 (546)
T KOG0977|consen 103 ETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLR 182 (546)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 45455555555555433333 22333333 345689999999999999999999999999999999999
Q ss_pred hHHHHHHH
Q 020751 183 DEFQSVRD 190 (322)
Q Consensus 183 ~Dv~~v~~ 190 (322)
.+++.++.
T Consensus 183 ~~l~~~r~ 190 (546)
T KOG0977|consen 183 EELARARK 190 (546)
T ss_pred HHHHHHHH
Confidence 99998884
No 474
>cd00089 HR1 Protein kinase C-related kinase homology region 1 domain; also known as the ACC (antiparallel coiled-coil) finger domain or Rho-binding domain. Found in vertebrate PRK1 and yeast PKC1 protein kinases C; those found in rhophilin bind RhoGTP; those in PRK1 bind RhoA and RhoB. Rho family members function as molecular switches, cycling between inactive and active forms, controlling a variety of cellular processes. HR1 repeats often occur in tandem repeat arrangments, seperated by a short linker region.
Probab=28.94 E-value=2.6e+02 Score=21.25 Aligned_cols=59 Identities=8% Similarity=0.277 Sum_probs=40.0
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020751 143 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 143 KrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
++.+.+||+.+-.+|+.-..+-+...+=+.....+-.. .+...++.....-..||+.+.
T Consensus 4 ~~~~~~~l~~L~~~l~~E~~~r~Gaenm~~~~~~~~~~--~~~~~~~~~l~es~~ki~~Lr 62 (72)
T cd00089 4 RSKLQSRLERLEKELSIELKVKEGAENLLRLYSDEKKK--KLLAEAEQMLRESKQKLELLK 62 (72)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--cCHHHHHHHHHHHHHHHHHHH
Confidence 46678899999999988888887777755443333211 466777766666666666554
No 475
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=28.83 E-value=4e+02 Score=28.17 Aligned_cols=68 Identities=10% Similarity=0.186 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHH-----HHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020751 136 YSSISAAQRQLSSKITSVDRDVNKI-----VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 205 (322)
Q Consensus 136 s~sLaaaKrhLsqRId~vD~klDeq-----~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~k 205 (322)
......+|.+|..-|..+.++|++. .+-.+.+++.+.+..+-|.. +|.+.+++....|+.++..++.+
T Consensus 522 ~~~~~eakN~le~~i~~~~~~l~~~~~~~~~~e~~~i~~~l~~~~~wL~~--~~~~~i~~k~~~L~~~~~~~~~~ 594 (627)
T PRK00290 522 RKELVEARNQADSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKG--EDKEAIKAKTEELTQASQKLGEA 594 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556777777777778777632 22234444445555554442 26777777777777777777764
No 476
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=28.76 E-value=5.2e+02 Score=30.12 Aligned_cols=37 Identities=16% Similarity=0.200 Sum_probs=15.6
Q ss_pred HHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751 166 ATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 202 (322)
Q Consensus 166 ~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 202 (322)
+..++..+...++..+.+.+..+++.|..+-.++.++
T Consensus 294 ~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~l 330 (1072)
T KOG0979|consen 294 QKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESL 330 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444443444333
No 477
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=28.76 E-value=2.1e+02 Score=20.02 Aligned_cols=25 Identities=8% Similarity=0.300 Sum_probs=11.3
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHH
Q 020751 148 SKITSVDRDVNKIVEISQATQEEVT 172 (322)
Q Consensus 148 qRId~vD~klDeq~eis~~i~~eV~ 172 (322)
+.|+++...+-++.++...|..+|.
T Consensus 12 ~~l~~l~~~i~~l~~l~~~i~~~v~ 36 (66)
T smart00397 12 EELEQLEKSIGELKQIFLDMGTELE 36 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 478
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.71 E-value=2.5e+02 Score=27.55 Aligned_cols=61 Identities=13% Similarity=0.222 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHH----hHHHHHHHHHH
Q 020751 160 IVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT----TLGVKKLCDRA 220 (322)
Q Consensus 160 q~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~T----n~GV~~LC~f~ 220 (322)
+.++.++=.+.+..+..|+-....-++.+-.||..=+..||+||++-+.| -.|=..|-.++
T Consensus 171 ~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~ 235 (269)
T KOG0811|consen 171 QLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAA 235 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444444444555556788888775444 44545555444
No 479
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=28.66 E-value=7.8e+02 Score=26.68 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=10.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHH
Q 020751 124 ACNSVARQLEDVYSSISAAQRQ 145 (322)
Q Consensus 124 Av~svtKqLeqVs~sLaaaKrh 145 (322)
|.+=+.+||+.+.+.|..+.+.
T Consensus 268 a~~fL~~qL~~l~~~L~~aE~~ 289 (726)
T PRK09841 268 SLEFLQRQLPEVRSELDQAEEK 289 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555554444444433
No 480
>PF05055 DUF677: Protein of unknown function (DUF677); InterPro: IPR007749 This entry contains proteins belonging to the UPF0496 family, found in plants. This family includes AT14A like proteins from Arabidopsis thaliana. At14a contains a small domain that has sequence similarities to integrins from fungi, insects and humans. Transcripts of At14a are found in all Arabidopsis tissues and the protein localises partly to the plasma membrane [].
Probab=28.47 E-value=3.7e+02 Score=26.99 Aligned_cols=105 Identities=15% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHhhhheeeEE-eccCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 020751 92 IVVIVAVGYGYVW-WKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE 170 (322)
Q Consensus 92 ~a~iGavGYgYmw-WKGwsfSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~e 170 (322)
++++.++-++.++ |-+ -=+++=.+|+.-...+++...--.--.-+.|-- |.++-++|.+-.|-...+-+-
T Consensus 212 ~aa~~a~P~~~~gkw~~--------~~~~k~~~al~~~~~~l~~aakGtyI~~~DldT-IsrLV~RL~deIE~~~~~v~f 282 (336)
T PF05055_consen 212 LAAALAAPIGSVGKWCG--------SLWKKYEEALKKQKEQLDAAAKGTYILIKDLDT-ISRLVDRLEDEIEHMKALVDF 282 (336)
T ss_pred HHHHHccchHHHhHHHH--------HHHHHHHHHHHHHHHHHHHHHhccchHHHHHhh-HHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020751 171 VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 205 (322)
Q Consensus 171 V~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~k 205 (322)
--+-++|=..+..-++.++.-+..+..+|+++|+.
T Consensus 283 ave~~~d~~~vk~vv~el~k~~~~f~~qleELeeh 317 (336)
T PF05055_consen 283 AVERGEDEEAVKEVVKELKKNVESFTEQLEELEEH 317 (336)
T ss_pred HHhcCccchhHHHHHHHHHHhHHHHHHHHHHHHHH
No 481
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=28.42 E-value=1.7e+02 Score=22.39 Aligned_cols=14 Identities=14% Similarity=0.465 Sum_probs=10.3
Q ss_pred HHHHhHhhhhhhHH
Q 020751 145 QLSSKITSVDRDVN 158 (322)
Q Consensus 145 hLsqRId~vD~klD 158 (322)
++.+||+.+..+||
T Consensus 76 ~l~~~i~~L~~~le 89 (89)
T PF05164_consen 76 RLEERIEELNERLE 89 (89)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC
Confidence 77777777777765
No 482
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=28.40 E-value=2.8e+02 Score=27.98 Aligned_cols=50 Identities=12% Similarity=0.203 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhh
Q 020751 132 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLI 181 (322)
Q Consensus 132 LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~i 181 (322)
|++=+..|+++-|...++++.+..-+++|..-...-+..+.++...+.+.
T Consensus 9 L~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 9 LQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444555666666666666666666666555444444555555555554
No 483
>KOG2911 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.30 E-value=5.8e+02 Score=26.95 Aligned_cols=84 Identities=18% Similarity=0.238 Sum_probs=52.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHH----------------------HHHHHHHhHhhhhhhHHHHHHHHHHHHHHH------
Q 020751 120 SLSDACNSVARQLEDVYSSISA----------------------AQRQLSSKITSVDRDVNKIVEISQATQEEV------ 171 (322)
Q Consensus 120 nMsnAv~svtKqLeqVs~sLaa----------------------aKrhLsqRId~vD~klDeq~eis~~i~~eV------ 171 (322)
++-+|.+.+.||+|.+.+.+.. +|+-+..+|++...+++....+--+|.+-.
T Consensus 237 ~L~~~~~~L~kqie~L~qeie~~~~~~r~~~k~g~K~iA~~ylr~rk~~eK~~er~~~~l~~l~~vl~~Id~s~~nkvvl 316 (439)
T KOG2911|consen 237 DLIQARAKLAKQIEFLEQEIEKSKEKLRQALKEGKKQIAITYLRARKLLEKDLERKVSSLNNLETVLSQIDNSQTNKVVL 316 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcccHHHH
Confidence 5667777888888877766543 345566778888888888887777766542
Q ss_pred -------HHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020751 172 -------TILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 204 (322)
Q Consensus 172 -------~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~ 204 (322)
..++.-+.+ +.-.++|+.++..+..-+++=++
T Consensus 317 ~AyksGs~alK~il~~-~~s~ekVed~Ldev~et~d~~~E 355 (439)
T KOG2911|consen 317 QAYKSGSEALKAILAQ-GGSTEKVEDVLDEVNETLDRQEE 355 (439)
T ss_pred HHHHHhHHHHHHHHhc-cCChhhHHHHHHHHHHHHhhHHH
Confidence 222333333 33345566666666666655443
No 484
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=28.23 E-value=3.5e+02 Score=24.93 Aligned_cols=122 Identities=13% Similarity=0.089 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHhcCCCceEEEeCCCCCCC-CchHHHH-HHHhhhheeeEEeccCCcCchhhhhhhhHHHHHHHHHHhH
Q 020751 55 DLLAEVSSVQQELSHVPRSVIIETSSGSGTG-AKKYGVI-VVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQL 132 (322)
Q Consensus 55 dL~aQV~~LaqElr~LsR~ITVvn~~ssg~g-g~~y~l~-a~iGavGYgYmwWKGwsfSDlMfVTKRnMsnAv~svtKqL 132 (322)
+....|..|.+.|+.|.+.+..+... ... +..++-+ .++..+|=|= -..+|++|+..++..-
T Consensus 16 ~~k~~i~~Le~~Lk~l~~~~e~lv~~--r~ela~~~~~f~~s~~~L~~~E--------------~~~~Ls~al~~la~~~ 79 (224)
T cd07623 16 EKQQQIENLDQQLRKLHASVESLVNH--RKELALNTGSFAKSAAMLSNCE--------------EHTSLSRALSQLAEVE 79 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcc--------------cchhHHHHHHHHHHHH
Confidence 37778888998888885444333322 111 1112221 2344444322 1347888888888777
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH---HHhhcchhhhhhHHHHHHHHHHHH
Q 020751 133 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEV---TILRGRSKLIGDEFQSVRDIVQTL 195 (322)
Q Consensus 133 eqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV---~~v~~dls~ig~Dv~~v~~~V~~L 195 (322)
+.++..... +-.+=...+.+-|++-..+...+++-. ..+-....+...++...+.....|
T Consensus 80 ~ki~~~~~~---qa~~d~~~l~e~L~eY~r~i~svk~~f~~R~~a~~~~q~a~~~l~kkr~~~~Kl 142 (224)
T cd07623 80 EKIEQLHGE---QADTDFYILAELLKDYIGLIGAIKDVFHERVKVWQNWQNAQQTLTKKREAKAKL 142 (224)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766554 333344556667777777766666543 334445566666777777664444
No 485
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=28.20 E-value=4.6e+02 Score=27.32 Aligned_cols=58 Identities=14% Similarity=0.234 Sum_probs=36.4
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 020751 116 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTI 173 (322)
Q Consensus 116 VTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~ 173 (322)
+.|..+-.+-..+++++.++++.|...++.+..+|+..-++++...+-...+.+++..
T Consensus 128 ~~r~~vl~~a~~l~~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~~ 185 (547)
T PRK08147 128 AARQALIGKAEGLVNQFKTTDQYLRDQDKGVNTAIGSSVDQINNYAKQIASLNDQITR 185 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666667777777777777777777777766665555555444444444444433
No 486
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=28.11 E-value=93 Score=25.27 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 020751 183 DEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 216 (322)
Q Consensus 183 ~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~L 216 (322)
+|++.+| .++++||.|-+++|.-++-.
T Consensus 15 ~dfne~~-------kRLdeieekvef~~~Ev~Qr 41 (75)
T COG4064 15 DDFNEIH-------KRLDEIEEKVEFVNGEVYQR 41 (75)
T ss_pred HHHHHHH-------HHHHHHHHHHHhhHHHHHHH
Confidence 4666666 77888888888888766554
No 487
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=28.04 E-value=1.4e+02 Score=28.85 Aligned_cols=72 Identities=13% Similarity=0.153 Sum_probs=44.5
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH-HHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHH
Q 020751 130 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIV-EISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 201 (322)
Q Consensus 130 KqLeqVs~sLaaaKrhLsqRId~vD~klDeq~-eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ 201 (322)
..|-.+...+...|+.|...-+-+...+.... .+.+.+++...++..++.+..+.++..++++..|=+-..+
T Consensus 180 ~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s 252 (322)
T COG0598 180 ERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLS 252 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666665555544444444 5666777777777777777777777777776665444333
No 488
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=28.01 E-value=62 Score=26.44 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhHHhHH
Q 020751 183 DEFQSVRDIVQTLESKLIEIEGKQDITTLG 212 (322)
Q Consensus 183 ~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~G 212 (322)
.|++.++ .||+.||+|-++||.=
T Consensus 15 ~d~~~i~-------~rLD~iEeKVEftn~E 37 (77)
T PRK01026 15 KDFKEIQ-------KRLDEIEEKVEFTNAE 37 (77)
T ss_pred HHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 4566666 6777777777777754
No 489
>PRK09303 adaptive-response sensory kinase; Validated
Probab=27.97 E-value=1.3e+02 Score=29.07 Aligned_cols=13 Identities=8% Similarity=0.256 Sum_probs=7.3
Q ss_pred HHHHHHHHHHhcC
Q 020751 58 AEVSSVQQELSHV 70 (322)
Q Consensus 58 aQV~~LaqElr~L 70 (322)
.+++++.+-++.+
T Consensus 29 ~~~~~~~~~~~~~ 41 (380)
T PRK09303 29 EDIQRIIAYLESL 41 (380)
T ss_pred HHHHHHHHHHHhC
Confidence 3455555555555
No 490
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=27.89 E-value=3.4e+02 Score=22.18 Aligned_cols=12 Identities=42% Similarity=0.534 Sum_probs=6.6
Q ss_pred HHHHHHHHHhhc
Q 020751 213 VKKLCDRARELE 224 (322)
Q Consensus 213 V~~LC~f~~~~~ 224 (322)
|+.|=+|+..+|
T Consensus 82 v~~LD~ysk~LE 93 (99)
T PF10046_consen 82 VYELDEYSKELE 93 (99)
T ss_pred HHHHHHHHHHHH
Confidence 455555665554
No 491
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.87 E-value=1.4e+02 Score=33.92 Aligned_cols=81 Identities=10% Similarity=0.260 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 020751 130 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDIT 209 (322)
Q Consensus 130 KqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~T 209 (322)
.+++-=..++......+..||....+.++.+..+.+.+.++-..+...+++....++.....+..|-.|+.+++..-|-.
T Consensus 809 ~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~qadse 888 (970)
T KOG0946|consen 809 QELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQADSE 888 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHhhcch
Q ss_pred h
Q 020751 210 T 210 (322)
Q Consensus 210 n 210 (322)
+
T Consensus 889 ~ 889 (970)
T KOG0946|consen 889 T 889 (970)
T ss_pred H
No 492
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.81 E-value=5.4e+02 Score=26.94 Aligned_cols=96 Identities=11% Similarity=0.124 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHH
Q 020751 118 RRSLSDACNSVARQ--LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 195 (322)
Q Consensus 118 KRnMsnAv~svtKq--LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~L 195 (322)
|.|..-.-+.+.+- -...-+.+-...++-...+..++.-.-+.++++++|......-..+...+-.+++.+..-+..+
T Consensus 8 r~n~d~v~~~l~~r~~~~~~~~~~~~ld~~~r~~~~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~ 87 (429)
T COG0172 8 RENPDAVREKLKKRGGDALDVDKLLELDEERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKEL 87 (429)
T ss_pred hhCHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhc
Q ss_pred HHHHHHhhhhhhHHhHHH
Q 020751 196 ESKLIEIEGKQDITTLGV 213 (322)
Q Consensus 196 e~Ki~~iE~kQd~Tn~GV 213 (322)
|.+++.++..-+.....+
T Consensus 88 e~~~~~~~~~l~~~ll~i 105 (429)
T COG0172 88 EAALDELEAELDTLLLTI 105 (429)
T ss_pred cHHHHHHHHHHHHHHHhC
No 493
>PHA03332 membrane glycoprotein; Provisional
Probab=27.73 E-value=8.4e+02 Score=28.96 Aligned_cols=119 Identities=8% Similarity=0.105 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHH-HHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHH
Q 020751 121 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI-VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 199 (322)
Q Consensus 121 MsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq-~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki 199 (322)
++|++..++..|.+.+..|..-=++...||+.|.++++.. .+....+..=-+.+++++....+.|+..+....=- ..|
T Consensus 910 lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~ql~~~~~~~N~~ie~~~aaalyY-QQl 988 (1328)
T PHA03332 910 TSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQLKELGTTTNERIEEVMAAALYY-QQL 988 (1328)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH-HHH
Q ss_pred HHhhhhhhHHhHHHHHHHHHHHhhccCCCccceeccccCcc
Q 020751 200 IEIEGKQDITTLGVKKLCDRARELENGRPTELVQASRYTLS 240 (322)
Q Consensus 200 ~~iE~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~Q~~~s~s~ 240 (322)
.++...--..+..+.+-.+....-=++..+.++|+-|-+-|
T Consensus 989 nsltnqv~~saskL~~qv~myrTCl~Sl~aG~L~GCP~~~p 1029 (1328)
T PHA03332 989 NSLTNQVTQSASKLGYQVGMYRTCLKSLLAGTLAGCPTDAP 1029 (1328)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHhhcccccCCCCCCh
No 494
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=27.66 E-value=3e+02 Score=21.60 Aligned_cols=60 Identities=15% Similarity=0.217 Sum_probs=0.0
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020751 144 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 144 rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
..|...-++|..+-.....+++..+.++.+.-..+......++....-+..|+.++.+-|
T Consensus 15 a~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~~E 74 (74)
T PF12329_consen 15 AQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKRAE 74 (74)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
No 495
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=27.56 E-value=3.6e+02 Score=22.39 Aligned_cols=60 Identities=12% Similarity=0.087 Sum_probs=0.0
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020751 146 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 205 (322)
Q Consensus 146 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~k 205 (322)
.+.||+++..+.+.+.+..++-++...+++.++.....=+...+..=..++.+.+....+
T Consensus 23 qs~~i~~L~a~n~~q~~tI~qq~~~~~~L~~~~~~~r~~~~~~~~~~qq~r~~~e~~~e~ 82 (110)
T PF10828_consen 23 QSQRIDRLRAENKAQAQTIQQQEDANQELKAQLQQNRQAVEEQQKREQQLRQQSEERRES 82 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 496
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=27.48 E-value=1.3e+02 Score=24.02 Aligned_cols=74 Identities=11% Similarity=0.186 Sum_probs=0.0
Q ss_pred chhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHH
Q 020751 112 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 186 (322)
Q Consensus 112 DlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~ 186 (322)
|.++--++.+..-..++.+....+---|..||..+.. +..++..+++|.+-.+..++++..-+.=|..++.-++
T Consensus 10 ~~l~~~~~d~~~~~kd~~~~~~~lk~Klq~ar~~i~~-lpgi~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~~ 83 (83)
T PF07544_consen 10 DILHQISKDPPLSSKDLDTATGSLKHKLQKARAAIRE-LPGIDRSVEEQEEEIEELEEQIRKKREVLQKFKERVM 83 (83)
T ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHh-CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
No 497
>PF14661 HAUS6_N: HAUS augmin-like complex subunit 6 N-terminus
Probab=27.48 E-value=5.2e+02 Score=24.23 Aligned_cols=87 Identities=14% Similarity=0.169 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHH------HHHHHHHHH
Q 020751 121 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF------QSVRDIVQT 194 (322)
Q Consensus 121 MsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv------~~v~~~V~~ 194 (322)
++.+-..-...++....-+.+.++.+.+-++.-+...++..+.++.+..++.++...-......+ +.-..-+..
T Consensus 144 ~~~~~~~~~~~~~~~~a~~~~~r~~~~~~~~~~~~~~~~~~~~aq~L~~k~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (247)
T PF14661_consen 144 LAEAFRLKPQDLHELLARILAHRNSFLQILQEKDAARQKYQEFAQLLRKKYRELSAECAELQAQLKKLQKSDASNRQLWE 223 (247)
T ss_pred hhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHH
Q ss_pred ---------HHHHHHHhhhhhh
Q 020751 195 ---------LESKLIEIEGKQD 207 (322)
Q Consensus 195 ---------Le~Ki~~iE~kQd 207 (322)
+..+++.|...+.
T Consensus 224 ~~~~~w~~~~~~~~~kvr~~W~ 245 (247)
T PF14661_consen 224 QVRNNWSGSLQEKIQKVRELWM 245 (247)
T ss_pred HHHHhhchhhHHHHHHHHHHHh
No 498
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=27.33 E-value=6.9e+02 Score=26.42 Aligned_cols=90 Identities=16% Similarity=0.164 Sum_probs=0.0
Q ss_pred hhhhhhhhHHHH---HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 020751 113 MMFATRRSLSDA---CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 189 (322)
Q Consensus 113 lMfVTKRnMsnA---v~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 189 (322)
++.+.-+.+... ...+...++.+.+....+.++|..+++.+...+.+..............++.++.+...-.+.++
T Consensus 72 ~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~r~~~~~~l~ 151 (779)
T PRK11091 72 FLSVVVEQLEESRQRLSRLVAKLEEMRERDLELNVQLKDNIAQLNQEIAEREKAEEARQEAFEQLKNEIKEREETQIELE 151 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHh
Q 020751 190 DIVQTLESKLIEI 202 (322)
Q Consensus 190 ~~V~~Le~Ki~~i 202 (322)
+.-.-|+.=++.+
T Consensus 152 ~~~~~l~~il~~~ 164 (779)
T PRK11091 152 QQSSLLRSFLDAS 164 (779)
T ss_pred HHHHHHHHHHhcC
No 499
>PF13166 AAA_13: AAA domain
Probab=27.30 E-value=7.5e+02 Score=26.04 Aligned_cols=96 Identities=16% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH-hHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHH
Q 020751 121 LSDACNSVARQLEDVYSSISAAQRQLSS-KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 199 (322)
Q Consensus 121 MsnAv~svtKqLeqVs~sLaaaKrhLsq-RId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki 199 (322)
+.+.+....+..+.....+..+++.+-. .+......+++..+-.+..+.++..+...+..+...+..+..-+..|+.++
T Consensus 375 ~n~~i~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 454 (712)
T PF13166_consen 375 LNELIEEHNEKIDNLKKEQNELKDKLWLHLIAKLKEDIEEYQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQL 454 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhhhhHHhHHHHHH
Q 020751 200 IEIEGKQDITTLGVKKL 216 (322)
Q Consensus 200 ~~iE~kQd~Tn~GV~~L 216 (322)
..++.-.+.=|.-+.++
T Consensus 455 ~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 455 KNTEPAADRINEELKRL 471 (712)
T ss_pred hhhHHHHHHHHHHHHHh
No 500
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=27.17 E-value=6.2e+02 Score=24.98 Aligned_cols=86 Identities=7% Similarity=0.142 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHH
Q 020751 114 MFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 193 (322)
Q Consensus 114 MfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~ 193 (322)
|-..|+-+++.-+.+.+.+.++..++...-.-+.+|+..+...+++.++-...+... ......+..|++.-+..-.
T Consensus 284 v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~----~~~~~~L~r~~~~~~~~y~ 359 (444)
T TIGR03017 284 YKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVLELNRQ----RDEMSVLQRDVENAQRAYD 359 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHhh
Q 020751 194 TLESKLIEIE 203 (322)
Q Consensus 194 ~Le~Ki~~iE 203 (322)
.|=.|..+.+
T Consensus 360 ~ll~r~~e~~ 369 (444)
T TIGR03017 360 AAMQRYTQTR 369 (444)
T ss_pred HHHHHHHHHH
Done!