Query 020751
Match_columns 322
No_of_seqs 63 out of 65
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 07:39:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020751.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020751hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ba2_A D12_ORF131, hypothetica 94.2 0.11 3.6E-06 41.6 6.3 77 115-203 8-84 (85)
2 2no2_A HIP-I, huntingtin-inter 93.2 1.1 3.6E-05 36.7 10.8 79 126-204 11-96 (107)
3 1m1j_B Fibrinogen beta chain; 88.8 2.9 0.0001 41.9 11.2 97 110-206 87-191 (464)
4 3mq9_A Bone marrow stromal ant 88.7 5.1 0.00017 38.1 12.4 77 120-197 356-432 (471)
5 3g67_A Methyl-accepting chemot 88.0 7.6 0.00026 34.7 12.4 39 121-159 5-43 (213)
6 3oja_A Leucine-rich immune mol 87.8 2.7 9.2E-05 40.1 9.9 66 153-218 412-477 (487)
7 3g67_A Methyl-accepting chemot 87.8 5 0.00017 35.9 11.0 62 128-189 5-66 (213)
8 1deq_A Fibrinogen (alpha chain 87.4 4.2 0.00014 40.1 11.0 93 111-203 55-154 (390)
9 3tnu_B Keratin, type II cytosk 86.4 1.5 5.3E-05 36.0 6.4 64 136-202 28-94 (129)
10 3ghg_A Fibrinogen alpha chain; 86.3 6 0.0002 40.6 11.8 94 112-205 53-153 (562)
11 3trt_A Vimentin; cytoskeleton, 85.4 6.2 0.00021 29.4 8.8 70 120-189 6-76 (77)
12 3na7_A HP0958; flagellar bioge 85.3 4.5 0.00016 36.4 9.5 56 152-207 64-121 (256)
13 2qyw_A Vesicle transport throu 85.0 1.9 6.3E-05 34.5 6.1 60 113-175 16-76 (102)
14 3tnu_A Keratin, type I cytoske 85.0 1.6 5.3E-05 36.1 5.8 69 131-202 25-96 (131)
15 3onj_A T-snare VTI1; helix, HA 84.7 2.9 9.8E-05 33.1 6.9 53 119-174 8-60 (97)
16 3okq_A BUD site selection prot 84.2 14 0.00046 31.9 11.4 77 138-214 11-107 (141)
17 1vcs_A Vesicle transport throu 83.8 1.4 4.6E-05 35.3 4.7 62 111-175 4-65 (102)
18 3oja_B Anopheles plasmodium-re 82.1 10 0.00035 36.8 11.0 37 118-154 458-494 (597)
19 2yo3_A General control protein 82.0 2.5 8.6E-05 39.8 6.5 58 132-189 200-257 (268)
20 2akf_A Coronin-1A; coiled coil 81.9 1.4 4.7E-05 29.2 3.3 29 178-206 1-29 (32)
21 1c1g_A Tropomyosin; contractIl 81.8 20 0.0007 29.4 13.9 34 169-202 69-102 (284)
22 4dnd_A Syntaxin-10, SYN10; str 81.6 3.5 0.00012 34.5 6.6 59 117-177 68-127 (130)
23 3gwk_C SAG1039, putative uncha 80.4 16 0.00054 27.2 10.3 69 132-200 13-93 (98)
24 3zx6_A HAMP, methyl-accepting 80.3 37 0.0013 31.4 14.2 15 211-225 283-297 (341)
25 3mq9_A Bone marrow stromal ant 79.7 17 0.0006 34.4 11.6 44 119-162 369-418 (471)
26 1deq_A Fibrinogen (alpha chain 78.7 15 0.00051 36.3 10.8 82 135-216 54-139 (390)
27 3hnw_A Uncharacterized protein 78.4 20 0.00068 30.2 10.3 64 145-208 72-135 (138)
28 3zx6_A HAMP, methyl-accepting 78.3 43 0.0015 31.0 14.1 9 56-64 11-19 (341)
29 1kmi_Z CHEZ, chemotaxis protei 78.0 12 0.00041 33.6 9.4 115 119-233 26-169 (214)
30 2jee_A YIIU; FTSZ, septum, coi 77.8 17 0.00057 28.7 8.9 68 150-217 8-75 (81)
31 2xzr_A Immunoglobulin-binding 77.4 26 0.0009 28.9 10.3 70 121-190 32-104 (114)
32 3a7p_A Autophagy protein 16; c 77.3 29 0.00098 30.2 11.1 70 124-208 59-129 (152)
33 3u59_A Tropomyosin beta chain; 76.2 26 0.0009 27.5 11.9 86 139-224 14-99 (101)
34 1m1j_A Fibrinogen alpha subuni 75.2 32 0.0011 34.9 12.3 99 107-205 49-154 (491)
35 1m1j_C Fibrinogen gamma chain; 74.8 23 0.00077 34.9 11.1 42 161-202 83-124 (409)
36 4abx_A DNA repair protein RECN 74.8 6.8 0.00023 33.3 6.6 92 109-204 67-164 (175)
37 3c9i_A Tail needle protein GP2 74.5 8.8 0.0003 35.4 7.5 59 147-205 83-141 (242)
38 1m1j_B Fibrinogen beta chain; 74.5 30 0.001 34.7 12.0 42 136-177 88-129 (464)
39 1fxk_C Protein (prefoldin); ar 73.9 5.6 0.00019 32.2 5.6 40 140-179 87-126 (133)
40 1ic2_A Tropomyosin alpha chain 73.5 21 0.00073 27.1 8.4 59 145-203 17-75 (81)
41 3m0a_A TNF receptor-associated 73.1 17 0.0006 26.3 7.6 58 146-203 3-60 (66)
42 1gl2_D Syntaxin 8, vesicle tra 72.9 9.5 0.00033 27.6 6.1 49 150-212 11-59 (65)
43 3u59_A Tropomyosin beta chain; 72.8 33 0.0011 27.0 10.3 67 130-196 33-99 (101)
44 2l5g_B Putative uncharacterize 72.2 2.8 9.5E-05 29.6 2.8 30 142-171 3-32 (42)
45 3ghg_A Fibrinogen alpha chain; 71.9 23 0.00078 36.4 10.5 74 135-208 51-128 (562)
46 3htk_A Structural maintenance 71.8 12 0.00041 26.5 6.3 45 153-197 10-54 (60)
47 4ioe_A Secreted protein ESXB; 71.4 27 0.00093 25.5 9.0 30 124-153 13-42 (93)
48 3u1c_A Tropomyosin alpha-1 cha 70.9 37 0.0013 26.9 10.5 81 142-222 17-97 (101)
49 4ioe_A Secreted protein ESXB; 70.4 29 0.00098 25.4 10.0 53 130-182 12-69 (93)
50 1sfc_D Protein (SNAP-25B), pro 70.3 18 0.00061 27.9 7.5 46 171-216 38-83 (87)
51 1n7s_D SNAP-25A; neuronal snar 69.8 26 0.00088 25.4 7.8 35 180-214 28-62 (66)
52 1ic2_A Tropomyosin alpha chain 69.8 34 0.0012 25.9 9.4 65 146-210 4-68 (81)
53 1l8d_A DNA double-strand break 69.7 37 0.0013 26.4 9.8 35 125-159 5-42 (112)
54 3zbh_A ESXA; unknown function, 69.3 31 0.0011 25.3 10.9 29 131-159 13-41 (99)
55 2nps_D Syntaxin-6; vesicle fus 69.2 17 0.00058 27.6 7.0 40 179-218 36-75 (82)
56 2nps_D Syntaxin-6; vesicle fus 68.5 10 0.00034 28.9 5.6 57 148-204 19-75 (82)
57 3efg_A Protein SLYX homolog; x 68.3 12 0.00041 28.9 6.0 54 144-204 10-63 (78)
58 2zdi_C Prefoldin subunit alpha 67.3 8.3 0.00028 32.1 5.3 39 140-178 97-135 (151)
59 1m1j_C Fibrinogen gamma chain; 66.9 45 0.0016 32.7 11.2 49 177-225 85-133 (409)
60 1sfc_D Protein (SNAP-25B), pro 65.9 33 0.0011 26.4 8.2 58 145-202 26-83 (87)
61 1gl2_D Syntaxin 8, vesicle tra 65.8 13 0.00043 27.0 5.4 48 129-180 8-55 (65)
62 3swy_A Cyclic nucleotide-gated 64.8 13 0.00044 26.5 5.1 36 121-156 10-45 (46)
63 3ghg_C Fibrinogen gamma chain; 63.9 44 0.0015 33.0 10.5 88 112-199 27-121 (411)
64 3na7_A HP0958; flagellar bioge 63.9 81 0.0028 28.1 12.7 40 147-186 103-142 (256)
65 1jth_B Syntaxin 1A; coiled-coi 63.5 37 0.0013 25.3 7.8 58 168-225 9-70 (77)
66 2vs0_A Virulence factor ESXA; 62.5 42 0.0014 24.4 8.2 28 132-159 11-38 (97)
67 3htk_A Structural maintenance 62.2 30 0.001 24.3 6.8 47 131-177 9-55 (60)
68 3swf_A CGMP-gated cation chann 62.2 23 0.00078 27.6 6.5 39 121-159 12-50 (74)
69 2nps_B Syntaxin 13, vesicle-as 61.0 34 0.0012 25.1 7.1 54 169-222 6-63 (71)
70 3zbh_A ESXA; unknown function, 60.9 46 0.0016 24.3 10.1 76 124-199 13-93 (99)
71 2dfs_A Myosin-5A; myosin-V, in 59.6 58 0.002 35.5 11.4 18 147-164 983-1000(1080)
72 3cvf_A Homer-3, homer protein 59.4 36 0.0012 26.6 7.2 60 123-203 6-65 (79)
73 3ghg_C Fibrinogen gamma chain; 58.3 1.2E+02 0.004 30.0 12.3 92 134-225 24-133 (411)
74 3ci9_A Heat shock factor-bindi 58.2 22 0.00075 25.4 5.3 41 120-160 3-43 (48)
75 3o0z_A RHO-associated protein 58.1 98 0.0033 27.2 11.8 81 119-203 58-138 (168)
76 2xdj_A Uncharacterized protein 57.9 43 0.0015 26.1 7.5 27 165-191 30-56 (83)
77 1wle_A Seryl-tRNA synthetase; 57.4 38 0.0013 34.0 8.9 29 138-169 74-102 (501)
78 3gwk_C SAG1039, putative uncha 57.4 56 0.0019 24.2 9.6 19 153-171 60-78 (98)
79 3u1c_A Tropomyosin alpha-1 cha 57.1 70 0.0024 25.2 11.8 52 144-195 47-98 (101)
80 3cve_A Homer protein homolog 1 56.8 56 0.0019 25.1 7.8 46 144-189 17-62 (72)
81 1m1j_A Fibrinogen alpha subuni 56.5 49 0.0017 33.5 9.4 46 142-187 112-157 (491)
82 2v71_A Nuclear distribution pr 56.0 1.1E+02 0.0038 27.2 13.4 98 117-214 29-133 (189)
83 4i0x_B ESAT-6-like protein MAB 55.9 66 0.0022 24.5 8.8 34 130-163 14-47 (103)
84 2b9c_A Striated-muscle alpha t 55.7 63 0.0021 27.4 8.8 68 148-215 52-119 (147)
85 2jee_A YIIU; FTSZ, septum, coi 55.7 73 0.0025 25.0 8.4 46 156-201 28-80 (81)
86 1n7s_D SNAP-25A; neuronal snar 55.3 52 0.0018 23.7 7.2 58 144-201 6-63 (66)
87 3zcc_A HAMP, osmolarity sensor 55.1 53 0.0018 23.3 8.2 23 161-183 65-87 (114)
88 2w83_C C-JUN-amino-terminal ki 54.6 75 0.0026 24.9 8.2 65 119-204 5-72 (77)
89 3fav_B ESAT-6, 6 kDa early sec 54.4 40 0.0014 24.8 6.6 28 132-159 10-37 (94)
90 3s84_A Apolipoprotein A-IV; fo 54.1 62 0.0021 29.8 9.2 27 160-186 207-233 (273)
91 1sfc_B Protein (syntaxin 1A), 53.9 69 0.0024 24.2 8.2 55 167-221 19-77 (83)
92 3cvf_A Homer-3, homer protein 53.4 65 0.0022 25.1 7.8 52 118-169 22-73 (79)
93 3fav_A ESAT-6-like protein ESX 52.9 56 0.0019 24.5 7.4 65 132-196 12-88 (101)
94 3gp4_A Transcriptional regulat 51.4 76 0.0026 26.0 8.5 25 180-204 92-116 (142)
95 3m0d_C TNF receptor-associated 51.1 59 0.002 23.9 6.9 37 167-203 25-61 (65)
96 4dnd_A Syntaxin-10, SYN10; str 50.8 1.1E+02 0.0036 25.4 10.4 96 102-204 17-126 (130)
97 2zqm_A Prefoldin beta subunit 50.5 30 0.001 26.9 5.6 15 56-70 25-39 (117)
98 3a7p_A Autophagy protein 16; c 50.1 1.1E+02 0.0038 26.5 9.5 21 185-205 98-118 (152)
99 1qu7_A Methyl-accepting chemot 49.8 1.4E+02 0.0046 26.4 12.3 15 56-70 71-85 (227)
100 2v66_B Nuclear distribution pr 49.6 1.1E+02 0.0037 25.2 11.1 69 119-191 6-74 (111)
101 4h22_A Leucine-rich repeat fli 49.4 66 0.0023 26.4 7.6 59 142-200 24-82 (103)
102 3fx7_A Putative uncharacterize 48.9 1E+02 0.0035 24.8 8.8 73 125-197 11-84 (94)
103 1i84_S Smooth muscle myosin he 48.8 34 0.0012 37.1 7.5 23 19-41 652-674 (1184)
104 3nmd_A CGMP dependent protein 48.0 54 0.0018 25.3 6.4 50 125-175 15-67 (72)
105 3ol1_A Vimentin; structural ge 47.8 1.1E+02 0.0038 24.7 10.8 72 137-208 30-101 (119)
106 3v86_A De novo design helix; c 47.7 9.8 0.00033 24.2 1.8 23 166-188 4-26 (27)
107 1ses_A Seryl-tRNA synthetase; 46.3 57 0.002 31.6 7.9 65 139-216 33-97 (421)
108 1n7s_B Syntaxin 1A; neuronal s 45.4 85 0.0029 22.8 7.3 50 168-217 11-64 (68)
109 3qne_A Seryl-tRNA synthetase, 45.2 37 0.0013 34.1 6.5 63 139-205 38-100 (485)
110 2c5k_T Syntaxin TLG1, T-snare 45.2 65 0.0022 25.4 6.8 73 123-205 10-90 (95)
111 1jcd_A Major outer membrane li 45.1 41 0.0014 24.3 5.1 14 168-181 24-37 (52)
112 1l4a_D S-SNAP25 fusion protein 44.8 48 0.0017 25.6 5.9 38 179-216 47-84 (87)
113 3b5n_D Protein transport prote 44.7 86 0.0029 23.0 7.0 32 180-211 28-59 (64)
114 3vkg_A Dynein heavy chain, cyt 44.5 1.1E+02 0.0039 37.4 11.4 58 121-178 2012-2072(3245)
115 2v66_B Nuclear distribution pr 43.9 1.3E+02 0.0046 24.6 9.7 73 144-216 6-82 (111)
116 3vkg_A Dynein heavy chain, cyt 43.9 90 0.0031 38.2 10.4 39 149-187 2015-2053(3245)
117 3hnw_A Uncharacterized protein 43.7 1.2E+02 0.0041 25.4 8.6 48 154-201 88-135 (138)
118 3gp4_A Transcriptional regulat 43.4 79 0.0027 25.9 7.4 29 143-171 83-111 (142)
119 3haj_A Human pacsin2 F-BAR; pa 43.2 2.1E+02 0.0072 27.7 11.4 38 115-152 128-165 (486)
120 1x79_B RAB GTPase binding effe 43.0 1.4E+02 0.0048 24.6 8.9 65 131-195 7-71 (112)
121 3oja_A Leucine-rich immune mol 42.6 28 0.00097 33.1 5.1 58 148-205 414-471 (487)
122 3mts_A Histone-lysine N-methyl 42.4 16 0.00056 26.8 2.7 22 101-122 18-39 (64)
123 1q08_A Zn(II)-responsive regul 42.0 49 0.0017 24.8 5.4 61 145-205 7-75 (99)
124 1fxk_A Prefoldin; archaeal pro 42.0 48 0.0017 25.3 5.5 19 118-136 60-78 (107)
125 1l4a_D S-SNAP25 fusion protein 41.8 80 0.0028 24.3 6.7 55 146-200 28-82 (87)
126 1gl2_B Syntaxin 7; membrane pr 41.8 64 0.0022 23.4 5.8 43 169-211 9-51 (65)
127 2nrj_A HBL B protein; enteroto 41.3 1.6E+02 0.0056 27.7 10.1 35 142-176 117-151 (346)
128 2dq0_A Seryl-tRNA synthetase; 41.2 57 0.0019 32.0 7.1 63 139-205 36-98 (455)
129 2q6q_A Spindle POLE BODY compo 41.1 1.1E+02 0.0036 23.8 7.1 56 143-198 5-60 (74)
130 2xdj_A Uncharacterized protein 40.9 87 0.003 24.4 6.8 54 147-207 5-58 (83)
131 3b5n_B Protein SSO1; snare com 40.9 1E+02 0.0035 22.4 7.9 52 168-219 9-64 (69)
132 2c5k_T Syntaxin TLG1, T-snare 40.4 47 0.0016 26.2 5.3 55 116-177 36-90 (95)
133 2pnv_A Small conductance calci 40.1 50 0.0017 23.1 4.7 30 134-163 9-38 (43)
134 3kkj_A Amine oxidase, flavin-c 39.7 4.8 0.00016 31.1 -0.6 14 4-17 5-18 (336)
135 1sum_B Phosphate transport sys 39.5 1.8E+02 0.0061 24.8 9.6 78 118-195 13-107 (235)
136 3hd7_A Vesicle-associated memb 39.1 1.2E+02 0.0041 23.5 7.4 23 131-153 6-28 (91)
137 2j69_A Bacterial dynamin-like 38.9 2.1E+02 0.0073 29.1 11.2 79 121-205 594-684 (695)
138 2i0m_A Phosphate transport sys 38.9 1.4E+02 0.0047 24.9 8.3 45 118-162 13-57 (216)
139 2dq3_A Seryl-tRNA synthetase; 38.2 56 0.0019 31.6 6.5 63 139-205 35-97 (425)
140 3ghg_B Fibrinogen beta chain; 37.4 1.6E+02 0.0055 29.6 9.7 35 110-144 82-116 (461)
141 4ack_A TSSL; protein transport 37.1 1.1E+02 0.0037 27.4 7.6 65 157-222 7-71 (185)
142 1wt6_A Myotonin-protein kinase 36.9 1.2E+02 0.0042 23.8 7.1 23 165-187 27-49 (81)
143 2dq0_A Seryl-tRNA synthetase; 36.7 1.7E+02 0.0059 28.6 9.7 88 130-217 9-103 (455)
144 3ghg_B Fibrinogen beta chain; 36.2 2.4E+02 0.0082 28.4 10.7 23 195-217 161-183 (461)
145 3f6n_A Virion-associated prote 35.9 67 0.0023 27.3 5.7 31 157-187 4-34 (129)
146 1fxk_A Prefoldin; archaeal pro 35.8 97 0.0033 23.5 6.4 15 56-70 20-34 (107)
147 4hpq_C ATG17, KLTH0D15642P; au 35.3 3.1E+02 0.01 26.9 11.2 6 21-26 120-125 (413)
148 2zqm_A Prefoldin beta subunit 35.1 1.1E+02 0.0038 23.5 6.6 18 118-135 65-82 (117)
149 2w83_C C-JUN-amino-terminal ki 35.0 1.6E+02 0.0055 23.0 9.0 9 126-134 33-41 (77)
150 1xwj_B Talin, metavinculin; ce 35.0 28 0.00094 21.6 2.5 24 117-140 2-25 (26)
151 3hd7_A Vesicle-associated memb 34.8 1.6E+02 0.0054 22.8 9.6 40 150-189 7-46 (91)
152 3lss_A Seryl-tRNA synthetase; 34.4 1.1E+02 0.0039 30.5 8.1 24 138-161 41-64 (484)
153 2d4y_A HAP1, flagellar HOOK-as 34.1 2.6E+02 0.009 26.8 10.5 59 116-174 64-122 (463)
154 3gpv_A Transcriptional regulat 34.0 88 0.003 25.7 6.2 24 180-203 106-129 (148)
155 1t3j_A Mitofusin 1; coiled coi 33.8 1.2E+02 0.0042 24.4 6.8 21 141-161 47-67 (96)
156 3hd7_B Syntaxin-1A; membrane p 33.7 1.4E+02 0.0049 23.6 7.2 69 159-227 11-83 (109)
157 3e7k_A TRPM7 channel; coiled-c 33.0 1.5E+02 0.005 21.9 7.1 45 122-170 8-52 (56)
158 1lwu_C Fibrinogen gamma chain; 32.6 45 0.0016 31.8 4.7 14 189-202 39-52 (323)
159 2xz3_A Maltose ABC transporter 31.8 1.2E+02 0.0041 28.5 7.5 64 151-222 360-423 (463)
160 1x8y_A Lamin A/C; structural p 31.7 1.7E+02 0.0059 22.4 7.1 59 135-200 15-73 (86)
161 2p22_A Suppressor protein STP2 31.7 1.1E+02 0.0037 27.0 6.6 51 112-162 34-84 (174)
162 3ci9_A Heat shock factor-bindi 31.6 83 0.0028 22.4 4.8 38 120-157 6-47 (48)
163 2a01_A Apolipoprotein A-I; fou 31.5 2.3E+02 0.0078 25.2 8.9 34 152-185 92-126 (243)
164 1qu7_A Methyl-accepting chemot 31.0 2.7E+02 0.0093 24.4 11.7 15 56-70 54-68 (227)
165 4g2k_A General control protein 30.7 1.1E+02 0.0036 26.0 6.1 35 166-200 18-52 (125)
166 3edv_A Spectrin beta chain, br 30.4 2.3E+02 0.0079 24.7 8.7 89 120-209 163-252 (323)
167 4aj5_A SKA1, spindle and kinet 30.4 2.1E+02 0.0073 23.0 10.1 45 174-222 35-79 (91)
168 3b5n_A Synaptobrevin homolog 1 30.3 1.5E+02 0.0051 21.1 7.0 22 132-153 4-25 (61)
169 1t72_A Phosphate transport sys 30.2 2.4E+02 0.0082 23.5 9.1 78 118-195 17-111 (227)
170 4ev6_A Magnesium transport pro 30.0 2.9E+02 0.0098 25.2 9.6 38 120-157 168-206 (339)
171 3tul_A Cell invasion protein S 29.5 55 0.0019 28.6 4.3 22 187-208 104-125 (158)
172 1d7m_A Cortexillin I; coiled-c 29.3 2.2E+02 0.0075 23.1 7.5 30 121-150 2-34 (101)
173 3mov_A Lamin-B1; LMNB1, B-type 29.3 2E+02 0.0067 22.7 7.2 69 125-200 14-82 (95)
174 1fzc_A Fibrin; blood coagulati 29.2 50 0.0017 26.4 3.6 28 144-171 3-30 (87)
175 2bsg_A Fibritin; viral protein 29.0 56 0.0019 33.1 4.8 85 119-205 43-130 (487)
176 1go4_E MAD1 (mitotic arrest de 28.8 44 0.0015 27.2 3.4 38 167-204 10-47 (100)
177 2v71_A Nuclear distribution pr 28.2 3.2E+02 0.011 24.3 14.3 94 128-221 29-133 (189)
178 2ke4_A CDC42-interacting prote 28.2 1.1E+02 0.0037 24.4 5.6 25 143-167 17-41 (98)
179 3plt_A Sphingolipid long chain 27.8 3.6E+02 0.012 24.8 11.9 84 122-209 61-150 (234)
180 3swk_A Vimentin; cytoskeleton, 27.7 2.1E+02 0.0071 22.0 10.3 67 140-206 13-79 (86)
181 1mqm_B Hemagglutinin HA2 chain 27.7 16 0.00055 33.4 0.6 55 116-170 36-97 (221)
182 3qne_A Seryl-tRNA synthetase, 27.7 2.9E+02 0.0097 27.7 9.7 88 131-218 14-106 (485)
183 3c9i_A Tail needle protein GP2 27.4 2.1E+02 0.0073 26.3 8.0 48 156-203 99-146 (242)
184 1ses_A Seryl-tRNA synthetase; 27.4 2.9E+02 0.0098 26.7 9.5 22 131-152 39-60 (421)
185 2rft_B Influenza B hemagglutin 27.3 26 0.0009 31.0 1.9 56 116-171 36-98 (176)
186 1gk4_A Vimentin; intermediate 27.2 2E+02 0.007 21.7 8.8 42 159-200 30-71 (84)
187 1xwm_A PHOU, phosphate uptake 27.1 2.7E+02 0.0093 23.1 9.4 44 118-161 13-56 (217)
188 3trt_A Vimentin; cytoskeleton, 26.7 1.9E+02 0.0064 21.1 8.7 37 167-203 40-76 (77)
189 2wrg_I Hemagglutinin HA2 chain 26.7 43 0.0015 30.6 3.3 47 116-162 36-89 (222)
190 1aq5_A Matrilin-1, CMP, cartil 26.6 1.2E+02 0.0041 21.7 4.9 10 146-155 35-44 (47)
191 2dfs_A Myosin-5A; myosin-V, in 26.5 5.2E+02 0.018 28.2 12.1 82 121-202 958-1049(1080)
192 2h1e_A Chromo domain protein 1 26.4 47 0.0016 28.7 3.4 27 100-127 48-74 (177)
193 1avo_B 11S regulator; proteaso 26.3 2.8E+02 0.0096 23.3 8.1 83 118-200 5-87 (140)
194 3u06_A Protein claret segregat 26.3 99 0.0034 30.0 6.0 32 139-170 8-39 (412)
195 1mqs_A SLY1 protein, SLY1P; SM 26.1 2.7E+02 0.0094 28.2 9.4 68 111-178 329-431 (671)
196 2l3l_A Tubulin-specific chaper 26.1 2.6E+02 0.0088 22.5 9.7 73 130-204 31-105 (111)
197 3hh0_A Transcriptional regulat 26.1 1.8E+02 0.0062 23.8 6.8 39 179-217 90-128 (146)
198 3l39_A Putative PHOU-like phos 25.8 3.3E+02 0.011 23.6 8.8 77 127-203 98-178 (227)
199 1wyy_A E2 glycoprotein; membra 25.3 45 0.0015 29.0 3.0 29 171-199 111-139 (149)
200 2ocy_A RAB guanine nucleotide 25.1 2.6E+02 0.0089 24.1 7.8 63 120-182 76-149 (154)
201 3h6p_C ESAT-6-like protein ESX 25.1 65 0.0022 24.0 3.6 32 163-194 54-85 (96)
202 3iyk_A VP5; icosahedral virus; 24.9 1.9E+02 0.0064 29.6 7.8 62 93-164 73-134 (526)
203 2lw1_A ABC transporter ATP-bin 24.7 2.3E+02 0.0078 21.5 7.6 27 147-173 21-47 (89)
204 2ieq_A S glycoprotein, spike g 24.5 2.7E+02 0.0091 23.1 7.3 101 123-223 1-102 (109)
205 4abm_A Charged multivesicular 24.4 2.4E+02 0.0081 21.5 8.7 64 139-203 11-79 (79)
206 3he5_B Synzip2; heterodimeric 24.4 1.2E+02 0.0041 21.7 4.6 34 171-204 12-45 (52)
207 3cve_A Homer protein homolog 1 24.4 2.4E+02 0.0082 21.6 8.0 55 146-203 5-59 (72)
208 1svf_B Protein (fusion glycopr 24.3 54 0.0018 22.2 2.6 22 128-149 10-31 (38)
209 2kvm_A Chromobox protein homol 24.2 32 0.0011 25.6 1.6 25 98-123 29-53 (74)
210 1l8d_A DNA double-strand break 24.1 2.4E+02 0.0083 21.6 8.8 24 166-189 68-91 (112)
211 2vkl_A RV0948C/MT0975; helical 24.0 1.9E+02 0.0063 22.3 6.1 51 145-195 16-66 (90)
212 2qyw_A Vesicle transport throu 24.0 2.4E+02 0.0083 22.1 6.9 61 129-189 14-76 (102)
213 1lrz_A FEMA, factor essential 24.0 1.2E+02 0.004 28.7 5.9 35 113-147 237-271 (426)
214 1xsv_A Hypothetical UPF0122 pr 23.9 2.6E+02 0.0088 21.7 8.1 34 120-153 43-76 (113)
215 3i2w_A Syndapin, LD46328P; EFC 23.8 3.7E+02 0.013 23.5 9.8 39 116-154 114-152 (290)
216 3s84_A Apolipoprotein A-IV; fo 23.5 4.2E+02 0.014 24.1 10.6 45 140-184 102-147 (273)
217 1ez3_A Syntaxin-1A; three heli 23.5 1.4E+02 0.0047 23.2 5.4 16 125-140 14-29 (127)
218 1wle_A Seryl-tRNA synthetase; 23.4 4.7E+02 0.016 26.0 10.4 33 184-216 117-149 (501)
219 4abx_A DNA repair protein RECN 23.4 2.3E+02 0.0079 23.7 7.1 140 32-188 16-162 (175)
220 3i00_A HIP-I, huntingtin-inter 23.3 97 0.0033 25.6 4.6 44 158-204 11-54 (120)
221 4gip_D Fusion glycoprotein F1; 23.2 59 0.002 32.2 3.7 53 127-190 346-398 (409)
222 1tqg_A Chemotaxis protein CHEA 23.2 2.1E+02 0.0071 21.5 6.2 40 162-203 36-75 (105)
223 1wt6_A Myotonin-protein kinase 23.2 2.8E+02 0.0094 21.9 7.8 27 117-143 11-37 (81)
224 3kpe_A Fusion glycoprotein F0; 23.2 1.7E+02 0.0057 21.2 5.2 41 153-193 2-42 (51)
225 2fxo_A Myosin heavy chain, car 23.0 3E+02 0.01 22.2 9.1 66 123-188 58-123 (129)
226 2z5i_A TM, general control pro 23.0 1.3E+02 0.0046 21.3 4.7 31 144-174 15-45 (52)
227 2efr_A General control protein 22.8 3.6E+02 0.012 23.1 10.6 76 120-195 74-152 (155)
228 2d9u_A Chromobox protein homol 22.7 23 0.0008 26.4 0.7 25 98-123 26-50 (74)
229 1urq_A M-tomosyn isoform; tran 22.6 2.3E+02 0.0079 20.7 6.8 30 125-154 6-35 (63)
230 1gl2_C VTI1B, vesicle transpor 22.6 2.2E+02 0.0076 20.6 6.1 47 149-195 3-49 (65)
231 3r4h_A Coiled coil helix CC-TE 22.4 52 0.0018 21.8 2.2 25 166-190 6-30 (34)
232 3p8q_A GP5, head protein; viru 22.4 18 0.00063 34.1 0.0 64 133-203 5-68 (385)
233 2iub_A CORA, divalent cation t 22.3 4.6E+02 0.016 24.1 10.2 40 121-160 193-233 (363)
234 3r2p_A Apolipoprotein A-I; amp 22.1 3.6E+02 0.012 22.8 10.6 67 120-186 79-150 (185)
235 3l4f_A RHO guanine nucleotide 22.0 1.6E+02 0.0054 22.1 5.0 43 165-207 10-52 (61)
236 1gs9_A Apolipoprotein E, APOE4 22.0 1.1E+02 0.0038 26.1 4.9 12 166-177 103-114 (165)
237 3rkg_A Magnesium transporter M 21.9 2.7E+02 0.0093 25.5 7.8 39 121-161 132-170 (261)
238 3m3w_A Pacsin3, protein kinase 21.8 3.4E+02 0.012 24.6 8.4 34 116-149 127-160 (320)
239 3kqg_A Langerin, C-type lectin 21.8 1.2E+02 0.0041 24.5 4.8 19 145-163 3-21 (182)
240 3oz2_A Digeranylgeranylglycero 21.7 16 0.00053 32.0 -0.6 14 4-17 7-20 (397)
241 3q0x_A Centriole protein; cent 21.7 2E+02 0.0068 26.2 6.7 23 118-140 166-188 (228)
242 1lwu_A Fibrinogen alpha-1 chai 21.7 1.1E+02 0.0036 25.8 4.4 30 145-174 26-59 (119)
243 3m91_A Proteasome-associated A 21.5 1.5E+02 0.0053 21.2 4.7 30 146-175 14-43 (51)
244 2b9b_A Fusion glycoprotein F0; 21.5 2.1E+02 0.0072 29.0 7.4 22 127-148 427-448 (497)
245 2r2v_A GCN4 leucine zipper; co 21.2 1E+02 0.0035 20.8 3.4 26 149-174 2-27 (34)
246 3c98_B Syntaxin-1A; protein co 20.9 3.7E+02 0.013 22.5 8.0 21 123-143 47-67 (279)
247 2b2y_C CHD-1, chromodomain-hel 20.8 35 0.0012 28.3 1.4 23 101-123 60-82 (115)
248 3zrx_A AF1503 protein, osmolar 20.7 2.2E+02 0.0075 19.8 8.9 20 162-181 66-85 (115)
249 2bni_A General control protein 20.4 98 0.0034 20.9 3.2 28 149-176 2-29 (34)
250 2l7b_A Apolipoprotein E, APO-E 20.3 1.7E+02 0.0057 27.5 6.1 61 120-180 104-169 (307)
251 2xv5_A Lamin-A/C; structural p 20.3 2.8E+02 0.0094 21.0 6.2 47 153-199 3-49 (74)
252 3lwe_A M-phase phosphoprotein 20.2 29 0.00098 25.0 0.7 39 101-143 22-60 (62)
253 1nfn_A Apolipoprotein E3; lipi 20.2 3E+02 0.01 23.7 7.4 25 161-185 98-122 (191)
254 3qao_A LMO0526 protein, MERR-l 20.2 83 0.0028 28.2 3.8 21 185-205 92-112 (249)
255 4i0x_B ESAT-6-like protein MAB 20.2 2.8E+02 0.0097 20.9 7.8 27 116-142 11-37 (103)
256 1h2v_C 80 kDa nuclear CAP bind 20.1 83 0.0028 33.1 4.3 29 121-149 622-650 (771)
257 3uux_B Mitochondrial division 20.0 5.3E+02 0.018 23.9 9.7 67 119-189 152-218 (242)
No 1
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=94.17 E-value=0.11 Score=41.62 Aligned_cols=77 Identities=17% Similarity=0.235 Sum_probs=49.2
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHH
Q 020751 115 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 194 (322)
Q Consensus 115 fVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~ 194 (322)
|||+|-+..-..+. ++|..|.+|...+...+.-|-|.+..=-+++.+++..-..-|.-++.|-....+
T Consensus 8 YVT~Kqf~e~l~~F------------k~~~~~~~~~~kie~~~~~QgEqI~~qGeqIkeLq~eqkaQg~tl~lil~tL~~ 75 (85)
T 2ba2_A 8 YVTHKQLDEKLKNF------------VTKTEFKEFQTVVMESFAVQNQNIDAQGEQIKELQVEQKAQGKTLQLILEALQG 75 (85)
T ss_dssp BCBHHHHHHHHTTB------------CBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeHHHHHHHHHhh------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89998887643221 345555555555555555555555544555555555555666777788888888
Q ss_pred HHHHHHHhh
Q 020751 195 LESKLIEIE 203 (322)
Q Consensus 195 Le~Ki~~iE 203 (322)
+..+|+.||
T Consensus 76 ~nkRLDkle 84 (85)
T 2ba2_A 76 INKRLDNLE 84 (85)
T ss_dssp HHHHHHHHT
T ss_pred HHHHhhccC
Confidence 888888887
No 2
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=93.21 E-value=1.1 Score=36.69 Aligned_cols=79 Identities=10% Similarity=0.281 Sum_probs=63.4
Q ss_pred HHHHHhH---HHHHHHHHHHHHHHHHhHhhhh----hhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHH
Q 020751 126 NSVARQL---EDVYSSISAAQRQLSSKITSVD----RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 198 (322)
Q Consensus 126 ~svtKqL---eqVs~sLaaaKrhLsqRId~vD----~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 198 (322)
+.++||| .|..+.+..+|+.|..+|+.+. .|++++.+....++.++..-..+|..+..+++.+..-=..|..+
T Consensus 11 aE~~KqL~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~ 90 (107)
T 2no2_A 11 AEVTKQVSMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAE 90 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666 4677889999999999999865 67788888888888898888888888888888888777777777
Q ss_pred HHHhhh
Q 020751 199 LIEIEG 204 (322)
Q Consensus 199 i~~iE~ 204 (322)
++.++.
T Consensus 91 ~~~l~~ 96 (107)
T 2no2_A 91 FAELEK 96 (107)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 3
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=88.81 E-value=2.9 Score=41.85 Aligned_cols=97 Identities=10% Similarity=0.199 Sum_probs=62.8
Q ss_pred cCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHH---HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchh-----hh
Q 020751 110 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQ---RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK-----LI 181 (322)
Q Consensus 110 fSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaK---rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls-----~i 181 (322)
+.|+|=-..++....+..|-..|++++..-..++ ++|+..+...+.++.++.+..+.-.+++.+.+.-++ ++
T Consensus 87 l~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~ 166 (464)
T 1m1j_B 87 LQTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNI 166 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3788888889999999999999999987766655 345666666666555555555554444444443332 23
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhh
Q 020751 182 GDEFQSVRDIVQTLESKLIEIEGKQ 206 (322)
Q Consensus 182 g~Dv~~v~~~V~~Le~Ki~~iE~kQ 206 (322)
...+..++..+..|..||..+|.+-
T Consensus 167 ~~~i~~L~~~~~~l~~ki~~l~~~~ 191 (464)
T 1m1j_B 167 PSSLRVLRAVIDSLHKKIQKLENAI 191 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666667766666553
No 4
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=88.67 E-value=5.1 Score=38.06 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=55.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHH
Q 020751 120 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 197 (322)
Q Consensus 120 nMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 197 (322)
-|.+++..+-..=..+-++|..+.+.+.+-|++.-. ..|+......++.++++++.++.++.-.-..-++.|-+|-.
T Consensus 356 ~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (471)
T 3mq9_A 356 AVRTAVINAASGRQTVDEALKDAQTRITAARDGLRA-VMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMA 432 (471)
T ss_dssp HHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhHH-HHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHH
Confidence 344455444433335677888888888888877644 44778888899999999999998888888777777766543
No 5
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=88.03 E-value=7.6 Score=34.72 Aligned_cols=39 Identities=15% Similarity=0.277 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 020751 121 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 159 (322)
Q Consensus 121 MsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDe 159 (322)
++.|+..+...+..+.+.++.+-+++..-++.+....++
T Consensus 5 va~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~ 43 (213)
T 3g67_A 5 VKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISEN 43 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555544444444444444444333333
No 6
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=87.84 E-value=2.7 Score=40.14 Aligned_cols=66 Identities=9% Similarity=-0.056 Sum_probs=53.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 020751 153 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 218 (322)
Q Consensus 153 vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~ 218 (322)
+....+++.++.++.+.|-..++.+.+.++.+++.+++--..++..+.+++..=.-+++-...+|.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 445666677788888888888889999999999999888888888888888777777777777775
No 7
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=87.81 E-value=5 Score=35.94 Aligned_cols=62 Identities=11% Similarity=0.126 Sum_probs=27.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 020751 128 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 189 (322)
Q Consensus 128 vtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 189 (322)
+...+++++..+...-.++....+.+....+++.+..+.+.+++......+..+...+..+-
T Consensus 5 va~a~~em~~~i~~i~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (213)
T 3g67_A 5 VKERFVNLNRLFQELVGDFQAKSDQLVSVIQDMEKISENIMEELKKSGTNVDQIVERVKEAS 66 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444444444444444333333333
No 8
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=87.41 E-value=4.2 Score=40.12 Aligned_cols=93 Identities=10% Similarity=0.141 Sum_probs=48.4
Q ss_pred CchhhhhhhhHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhh
Q 020751 111 PDMMFATRRSLSDACNSVARQLEDVY-------SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGD 183 (322)
Q Consensus 111 SDlMfVTKRnMsnAv~svtKqLeqVs-------~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~ 183 (322)
-++|-=+-|++.+.++.+...|+.++ .-+..++.-|.+|.....+.=+-..|.+..++.....++++|.+---
T Consensus 55 qg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~~ 134 (390)
T 1deq_A 55 KGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQVQ 134 (390)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455556777777777777776653 33444555555555555444445555555555555555554433222
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 020751 184 EFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 184 Dv~~v~~~V~~Le~Ki~~iE 203 (322)
.|..++..|+.+-.||.+||
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE 154 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLE 154 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444
No 9
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=86.38 E-value=1.5 Score=36.00 Aligned_cols=64 Identities=9% Similarity=0.152 Sum_probs=31.4
Q ss_pred HHHHHHHHHH---HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751 136 YSSISAAQRQ---LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 202 (322)
Q Consensus 136 s~sLaaaKrh---LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 202 (322)
.+.+..+|.+ |..+|+++...++.+...-....+.+.++.. +...+++.++..+..||.-|..+
T Consensus 28 ~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~ 94 (129)
T 3tnu_B 28 GDDLRNTKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQ---RGELALKDARNKLAELEEALQKA 94 (129)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444444432 3345666666666666555555555555443 23345555565566666555544
No 10
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=86.35 E-value=6 Score=40.61 Aligned_cols=94 Identities=9% Similarity=0.125 Sum_probs=63.1
Q ss_pred chhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH-------HHHHHHHHHHHHhhcchhhhhhH
Q 020751 112 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV-------EISQATQEEVTILRGRSKLIGDE 184 (322)
Q Consensus 112 DlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~-------eis~~i~~eV~~v~~dls~ig~D 184 (322)
++|-=+-|++.+-++.|-.+|++++.+=..+-....+-.+.+..++.+.. |++.+++..+..++..|.+--.-
T Consensus 53 glLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdnQlsn 132 (562)
T 3ghg_A 53 GLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIEKVQH 132 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677889999999999999999987766666666666666655555544 34444444444555555444455
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 020751 185 FQSVRDIVQTLESKLIEIEGK 205 (322)
Q Consensus 185 v~~v~~~V~~Le~Ki~~iE~k 205 (322)
+..||..|+.+-.||.++|--
T Consensus 133 IrvLQsnLedq~~kIQRLEvD 153 (562)
T 3ghg_A 133 IQLLQKNVRAQLVDMKRLEVD 153 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777788888743
No 11
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=85.37 E-value=6.2 Score=29.38 Aligned_cols=70 Identities=19% Similarity=0.254 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHhHHHHHH-HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 020751 120 SLSDACNSVARQLEDVYS-SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 189 (322)
Q Consensus 120 nMsnAv~svtKqLeqVs~-sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 189 (322)
.|+.+.+.|=.|-|.+-. .-+.+..-...+++.+........+-....+.|+++++..+....-|+++++
T Consensus 6 DL~~il~eiRaQYE~ia~knr~EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 6 DCTAAMRDVRQQYESVAAKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 466777777777665433 3445666677778777777777777777777777777776666666666553
No 12
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=85.28 E-value=4.5 Score=36.37 Aligned_cols=56 Identities=4% Similarity=0.092 Sum_probs=26.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhh--cchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020751 152 SVDRDVNKIVEISQATQEEVTILR--GRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 207 (322)
Q Consensus 152 ~vD~klDeq~eis~~i~~eV~~v~--~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd 207 (322)
++...+++..+-.+..++....++ .++..+..+++....-...||.+|.++...-+
T Consensus 64 ~~e~~i~~~~~ri~~~~~~l~~v~~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie 121 (256)
T 3na7_A 64 KNEQTLQDTNAKIASIQKKMSEIKSERELRSLNIEEDIAKERSNQANREIENLQNEIK 121 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433332 23444555555555555566655555544433
No 13
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=85.04 E-value=1.9 Score=34.52 Aligned_cols=60 Identities=8% Similarity=0.090 Sum_probs=41.6
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 020751 113 MMFATRRSLSDACNSVARQLEDVYSSIS-AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR 175 (322)
Q Consensus 113 lMfVTKRnMsnAv~svtKqLeqVs~sLa-aaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~ 175 (322)
++----+.+...++++.+.++++..... ..|+. .|..++..|||..|+.+++.-||..+-
T Consensus 16 lFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~---~i~~ie~~ldEA~eLl~qMelE~r~~p 76 (102)
T 2qyw_A 16 HFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKK---LVRDFDEKQQEANETLAEMEEELRYAP 76 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3333345566777888888887644323 44443 477888899999999999999987763
No 14
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=84.97 E-value=1.6 Score=36.13 Aligned_cols=69 Identities=6% Similarity=0.272 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHH---HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751 131 QLEDVYSSISAAQRQ---LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 202 (322)
Q Consensus 131 qLeqVs~sLaaaKrh---LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 202 (322)
+...-.+.+..+|.+ |..+|++|...++.+...-....+.+.++.. +...+++.++..+..||.-|..+
T Consensus 25 ~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~---~~~~~l~~~q~~i~~lE~eL~~~ 96 (131)
T 3tnu_A 25 EVATNSELVQSGKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKG---RYCMQLAQIQEMIGSVEEQLAQL 96 (131)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334555555543 4456777777777666666666666655554 33445666666666666666544
No 15
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=84.68 E-value=2.9 Score=33.08 Aligned_cols=53 Identities=9% Similarity=0.173 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 020751 119 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 174 (322)
Q Consensus 119 RnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v 174 (322)
..+...++++...|+++...=...|+. -|..++..+|+..|+..+|.-||..+
T Consensus 8 ~df~~~~~~i~~~l~~~~~~~ge~Rk~---~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 8 SDFKTTLEQAKASLAEAPSQPLSQRNT---TLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHGGGSCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccChHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345677888888888876333334443 47778889999999999999999888
No 16
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=84.22 E-value=14 Score=31.94 Aligned_cols=77 Identities=13% Similarity=0.223 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH------------HhhcchhhhhhHHHHHHHHHH--------HHHH
Q 020751 138 SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT------------ILRGRSKLIGDEFQSVRDIVQ--------TLES 197 (322)
Q Consensus 138 sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~------------~v~~dls~ig~Dv~~v~~~V~--------~Le~ 197 (322)
-+.+-|++|..+.|+|=.++|+.+.+.+.++++|. .+..|+.....|++.+...+. .+|.
T Consensus 11 y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~ 90 (141)
T 3okq_A 11 YMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEA 90 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHH
Confidence 46678889999999999999999999999988874 344555555555555555543 4677
Q ss_pred HHHHhhhhhhHHhHHHH
Q 020751 198 KLIEIEGKQDITTLGVK 214 (322)
Q Consensus 198 Ki~~iE~kQd~Tn~GV~ 214 (322)
-|..|..-|+|=|.==.
T Consensus 91 EL~~VceEQqfl~~Qed 107 (141)
T 3okq_A 91 ELDKVCEEQQFLTLQEE 107 (141)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777877665433
No 17
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=83.77 E-value=1.4 Score=35.26 Aligned_cols=62 Identities=10% Similarity=0.124 Sum_probs=45.5
Q ss_pred CchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 020751 111 PDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILR 175 (322)
Q Consensus 111 SDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~ 175 (322)
|+++----+.+...++.+.+.+.++...=...|+. -|..++..|||..|+..+|.-||..+-
T Consensus 4 SelFe~YE~df~~l~~~i~~kl~~i~~~~geerk~---~i~~ie~~l~EA~ell~qMelE~r~~p 65 (102)
T 1vcs_A 4 GSSGEGYEQDFAVLTAEITSKIARVPRLPPDEKKQ---MVANVEKQLEEARELLEQMDLEVREIP 65 (102)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHHHHGGGSCTTTHHH---HHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhccCcHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34444445667788899999998876432334443 377888999999999999999997764
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=82.11 E-value=10 Score=36.77 Aligned_cols=37 Identities=3% Similarity=0.083 Sum_probs=29.9
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhh
Q 020751 118 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVD 154 (322)
Q Consensus 118 KRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD 154 (322)
...+.+.+..+...+++....++..++++..|++...
T Consensus 458 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~~~~~~~~ 494 (597)
T 3oja_B 458 VNELRAEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYR 494 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcC
Confidence 3446678888888888888899999999888877766
No 19
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=82.00 E-value=2.5 Score=39.80 Aligned_cols=58 Identities=9% Similarity=0.213 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 020751 132 LEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 189 (322)
Q Consensus 132 LeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 189 (322)
..|++++++.++....+|+..|+.+++....=..++.+.|.++-..+-.|..+++.|+
T Consensus 200 v~QL~~s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~~~ 257 (268)
T 2yo3_A 200 YAQLKRSVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIARIK 257 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677778999999888888888777777666666666666655555555555555444
No 20
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=81.90 E-value=1.4 Score=29.22 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=25.3
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020751 178 SKLIGDEFQSVRDIVQTLESKLIEIEGKQ 206 (322)
Q Consensus 178 ls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQ 206 (322)
++++.+|+.+++.+|+.|..+++++|..-
T Consensus 1 isrlee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 1 VSRLEEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999764
No 21
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=81.77 E-value=20 Score=29.42 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=13.2
Q ss_pred HHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751 169 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 202 (322)
Q Consensus 169 ~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 202 (322)
.++..+...+..+..++..+..-+..++..+..+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (284)
T 1c1g_A 69 EKLELAEKKATDAEADVASLNRRIQLFEEELDRA 102 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444443333333333333
No 22
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=81.63 E-value=3.5 Score=34.54 Aligned_cols=59 Identities=19% Similarity=0.279 Sum_probs=33.0
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhh-hHHHHHHHHHHHHHHHHHhhcc
Q 020751 117 TRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDR-DVNKIVEISQATQEEVTILRGR 177 (322)
Q Consensus 117 TKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~-klDeq~eis~~i~~eV~~v~~d 177 (322)
|++-|.++|.++..+|+.+.+++..+.++=. |- +++. .+..=+.....++++|..++..
T Consensus 68 ~~~EL~~~l~sie~dLeDLe~sI~ivE~np~-kF-~l~~~Ei~~Rr~fV~~~r~~I~~mk~~ 127 (130)
T 4dnd_A 68 TTNELRNGLRSIEWDLEDLEETIGIVEANPG-KF-KLPAGDLQERKVFVERMREAVQEMKDH 127 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH-HH-CCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH-hc-CCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777777776665422 22 2222 2444445555555555554443
No 23
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=80.37 E-value=16 Score=27.24 Aligned_cols=69 Identities=12% Similarity=0.173 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHH------------HHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHH
Q 020751 132 LEDVYSSISAAQRQLSSKITSVDRDVNK------------IVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 199 (322)
Q Consensus 132 LeqVs~sLaaaKrhLsqRId~vD~klDe------------q~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki 199 (322)
|+++...+..+...+.+.+.+|...++. ..+.....+..+..+..-|..|...+...-..++.-|.++
T Consensus 13 l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~D~~~ 92 (98)
T 3gwk_C 13 LRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDADI 92 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443 3444555666666666666666666666666666666655
Q ss_pred H
Q 020751 200 I 200 (322)
Q Consensus 200 ~ 200 (322)
.
T Consensus 93 A 93 (98)
T 3gwk_C 93 A 93 (98)
T ss_dssp H
T ss_pred H
Confidence 4
No 24
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=80.30 E-value=37 Score=31.43 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHhhcc
Q 020751 211 LGVKKLCDRARELEN 225 (322)
Q Consensus 211 ~GV~~LC~f~~~~~~ 225 (322)
.....|-+.+..++.
T Consensus 283 ~~~~~l~~~a~~L~~ 297 (341)
T 3zx6_A 283 AAAAALEEQASRLTE 297 (341)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344455555555444
No 25
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=79.69 E-value=17 Score=34.37 Aligned_cols=44 Identities=7% Similarity=0.243 Sum_probs=28.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHH------HHHHHHHHHhHhhhhhhHHHHHH
Q 020751 119 RSLSDACNSVARQLEDVYSSI------SAAQRQLSSKITSVDRDVNKIVE 162 (322)
Q Consensus 119 RnMsnAv~svtKqLeqVs~sL------aaaKrhLsqRId~vD~klDeq~e 162 (322)
....+|++.+.+++++.-+.+ ..+.++|.+.|+++.+++-+...
T Consensus 369 ~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 418 (471)
T 3mq9_A 369 QTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEA 418 (471)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHH
Confidence 456667776666666554443 34456788888888888765443
No 26
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=78.67 E-value=15 Score=36.29 Aligned_cols=82 Identities=13% Similarity=0.185 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHH----HhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHh
Q 020751 135 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVT----ILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITT 210 (322)
Q Consensus 135 Vs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~----~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn 210 (322)
+...|..+-|.+..||+.|...|++.....+.+..-+. .++.+++++.+-=..+.+.-+.||.+|.-|..+-+-..
T Consensus 54 Lqg~Ldk~er~~~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q~ 133 (390)
T 1deq_A 54 MKGLIDEVDQDFTSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSRIEILRRKVIEQV 133 (390)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667778899999999999999988766666555543 44555666665556677777888888888877755544
Q ss_pred HHHHHH
Q 020751 211 LGVKKL 216 (322)
Q Consensus 211 ~GV~~L 216 (322)
.-|..|
T Consensus 134 ~~ir~L 139 (390)
T 1deq_A 134 QRINLL 139 (390)
T ss_pred HHHHHH
Confidence 434333
No 27
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=78.44 E-value=20 Score=30.20 Aligned_cols=64 Identities=8% Similarity=0.147 Sum_probs=50.7
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhH
Q 020751 145 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 208 (322)
Q Consensus 145 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~ 208 (322)
.+..+++.+...+++...=....+.|+...+..++....++..++.-+..|+.++..+|.+.+.
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445677777777777777777888888888888888888888888888888888888877654
No 28
>3zx6_A HAMP, methyl-accepting chemotaxis protein I; signaling, HAMP domain, TSR receptor, fusion; 2.65A {Archaeoglobus fulgidus}
Probab=78.31 E-value=43 Score=31.00 Aligned_cols=9 Identities=22% Similarity=0.313 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 020751 56 LLAEVSSVQ 64 (322)
Q Consensus 56 L~aQV~~La 64 (322)
|...+++++
T Consensus 11 l~~~~~~ia 19 (341)
T 3zx6_A 11 LSNTVDKIA 19 (341)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444444
No 29
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=78.00 E-value=12 Score=33.56 Aligned_cols=115 Identities=17% Similarity=0.189 Sum_probs=60.6
Q ss_pred hhHHHHHHHHH--HhHHHHHHHHHHHHHHHHHhH-------hhhhhhHHHHHHHHHHHHHHHHHhhcc----------hh
Q 020751 119 RSLSDACNSVA--RQLEDVYSSISAAQRQLSSKI-------TSVDRDVNKIVEISQATQEEVTILRGR----------SK 179 (322)
Q Consensus 119 RnMsnAv~svt--KqLeqVs~sLaaaKrhLsqRI-------d~vD~klDeq~eis~~i~~eV~~v~~d----------ls 179 (322)
|.|.++...++ +.|.+..+.|-.|+.+|.-=+ .++=+.+|.+..++..+.+++..++.. ++
T Consensus 26 R~Lh~sl~~l~~d~~l~~a~~~ipdA~~rL~~Vv~~TE~AA~~iLd~vE~~~~~~~~l~~~~~~l~~~w~~l~~~~~~~~ 105 (214)
T 1kmi_Z 26 RMLRDSLRELGLDQAIAEAAEAIPDARDRLYYVVQMTAQAAERALNSVEASQPHQDQMEKSAKALTQRWDDWFADPIDLA 105 (214)
T ss_dssp HHHHHHHHHHTHHHHHHHTTTTHHHHHHHTTTHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCHH
T ss_pred HHHHHHHHHcCCChHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCHH
Confidence 55666665553 334444555666665553322 223334555555555555555555321 11
Q ss_pred hh-------hhHHHHHHHHHHHHHHHHHHhh---hhhhHHhHHHHHHHHHHHhhccCCCcccee
Q 020751 180 LI-------GDEFQSVRDIVQTLESKLIEIE---GKQDITTLGVKKLCDRARELENGRPTELVQ 233 (322)
Q Consensus 180 ~i-------g~Dv~~v~~~V~~Le~Ki~~iE---~kQd~Tn~GV~~LC~f~~~~~~~~~~~~~Q 233 (322)
.+ ..=++.+......+...+.+|= .=||+|-+=|......++.++..-..=+..
T Consensus 106 ~~~~l~~~~~~~l~~v~~~~~~~~~~l~eIm~AqdFQDLTGQ~I~KVi~lv~~vE~~L~~ll~~ 169 (214)
T 1kmi_Z 106 DARELVTDTRQFLADVPAHTSFTNAQLLKIMMAQDFQDLTGQVIKRMMDVIQEIERQLLMVLLE 169 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 1112222222344444444443 348999999999999888888877766544
No 30
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=77.81 E-value=17 Score=28.70 Aligned_cols=68 Identities=15% Similarity=0.205 Sum_probs=50.5
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHH
Q 020751 150 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLC 217 (322)
Q Consensus 150 Id~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC 217 (322)
++.|..|+++..+.+...+-||.+++++-.....+.+.++.-...|+.....+..-|..=...|..|.
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777788888888888888888887777777777777777777777777766666666666553
No 31
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=77.40 E-value=26 Score=28.89 Aligned_cols=70 Identities=14% Similarity=0.273 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHH---hHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHH
Q 020751 121 LSDACNSVARQLEDVYSSISAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD 190 (322)
Q Consensus 121 MsnAv~svtKqLeqVs~sLaaaKrhLsq---RId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~ 190 (322)
...++++=+..++.-|-+|++--|.|.| |++....+++|..+=-+++.+++.++-.+.-.|..++..++.
T Consensus 32 ~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~ene~ar~kk 104 (114)
T 2xzr_A 32 IDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIENEIARIKK 104 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4677888888888888888866666655 444444444444444445555555555555555555555443
No 32
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=77.28 E-value=29 Score=30.25 Aligned_cols=70 Identities=9% Similarity=0.074 Sum_probs=44.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020751 124 ACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 124 Av~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
+|+.. +.+.+.-..|.....+|..||..++..+.+-....+.++|| +..++--..-+|.|+..++
T Consensus 59 ~vs~~-~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DE--------------l~aLqlq~n~lE~kl~kLq 123 (152)
T 3a7p_A 59 IVSHD-DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAA--------------LISGTIENNVLQQKLSDLK 123 (152)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
T ss_pred cccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH
Confidence 44443 33444556666777777777777777666666655555555 4556666677777777777
Q ss_pred h-hhhH
Q 020751 204 G-KQDI 208 (322)
Q Consensus 204 ~-kQd~ 208 (322)
. +++.
T Consensus 124 ~EN~~L 129 (152)
T 3a7p_A 124 KEHSQL 129 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 5 5444
No 33
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=76.23 E-value=26 Score=27.53 Aligned_cols=86 Identities=19% Similarity=0.188 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 020751 139 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 218 (322)
Q Consensus 139 LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~ 218 (322)
|..=+....-|.+.+..++.+..+-.....++|..++..+..+..|++....-....-.|+..-+..-.-+-..|..|..
T Consensus 14 lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnR 93 (101)
T 3u59_A 14 LKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNR 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555667777777777777777788888888888888888888888877777777777777666667777777776
Q ss_pred HHHhhc
Q 020751 219 RARELE 224 (322)
Q Consensus 219 f~~~~~ 224 (322)
-+.-++
T Consensus 94 riqllE 99 (101)
T 3u59_A 94 RIQLVE 99 (101)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 665443
No 34
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=75.20 E-value=32 Score=34.86 Aligned_cols=99 Identities=13% Similarity=0.206 Sum_probs=81.3
Q ss_pred cCCcCchhhhhhhhHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchh
Q 020751 107 GWKLPDMMFATRRSLSDACNSVARQLEDV-------YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 179 (322)
Q Consensus 107 GwsfSDlMfVTKRnMsnAv~svtKqLeqV-------s~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls 179 (322)
|--+-++|-=+.|+..+.++.+.+.|+.+ +.-+..++.-|.+|.....+.=+-..|.+..++.....++++|.
T Consensus 49 GCrLqglL~kqerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd 128 (491)
T 1m1j_A 49 GCRMQGIIDDTDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVA 128 (491)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHhhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 44555677788899988888888888877 45577788888888888888888888999999999999998887
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020751 180 LIGDEFQSVRDIVQTLESKLIEIEGK 205 (322)
Q Consensus 180 ~ig~Dv~~v~~~V~~Le~Ki~~iE~k 205 (322)
+--.-|..+|..|+.+-.||.++|.-
T Consensus 129 ~qi~~IrvLq~~l~~q~skIQRLE~d 154 (491)
T 1m1j_A 129 TQVNRIKALQNSIQEQVVEMKRLEVD 154 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65588888888899999999998854
No 35
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=74.82 E-value=23 Score=34.87 Aligned_cols=42 Identities=14% Similarity=0.149 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751 161 VEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 202 (322)
Q Consensus 161 ~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 202 (322)
.+-++.+.+|+..+...+.+....+..++.++..++.||..+
T Consensus 83 tq~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l 124 (409)
T 1m1j_C 83 TQKSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQL 124 (409)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHH
Confidence 334444555555554444444444555555554444444444
No 36
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=74.79 E-value=6.8 Score=33.30 Aligned_cols=92 Identities=13% Similarity=0.189 Sum_probs=43.4
Q ss_pred CcCchhhhhhhhHHHH------HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhh
Q 020751 109 KLPDMMFATRRSLSDA------CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 182 (322)
Q Consensus 109 sfSDlMfVTKRnMsnA------v~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig 182 (322)
+..|.+....+.|..+ .+.+...|+.++..|..+-..|..-.++++-.=+...++.. -...++.=-...|
T Consensus 67 ~~~~~L~~a~~~L~~l~~~d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~rL~~ie~----RL~~l~~L~RKyg 142 (175)
T 4abx_A 67 NAAGLIGEAVRALNAGAKYDETVMQLQNELRAALESVQAIAGELRDVAEGSAADPEALDRVEA----RLSALSKLKNKYG 142 (175)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH----HHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH----HHHHHHHHHHHcC
Confidence 3445555556655532 34455555555555555555555555555432222222221 1122222122334
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 020751 183 DEFQSVRDIVQTLESKLIEIEG 204 (322)
Q Consensus 183 ~Dv~~v~~~V~~Le~Ki~~iE~ 204 (322)
.+++.|-..-..+..++..++.
T Consensus 143 ~~~eell~~~~~~~~eL~~l~~ 164 (175)
T 4abx_A 143 PTLEDVVEFGAQAAEELAGLEE 164 (175)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhC
Confidence 4555555555555555555543
No 37
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=74.51 E-value=8.8 Score=35.38 Aligned_cols=59 Identities=20% Similarity=0.268 Sum_probs=51.3
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020751 147 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 205 (322)
Q Consensus 147 sqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~k 205 (322)
..||..+..++|+..+=+....+.+....-.+.++..||..++.-|..||+|+...|.+
T Consensus 83 e~rI~a~~a~l~dHE~RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~ 141 (242)
T 3c9i_A 83 EARIKQLRIDVDDHESRITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENN 141 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhcccccHHHHhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccc
Confidence 57999999999999988888888888888888999999999998899998888877765
No 38
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=74.46 E-value=30 Score=34.68 Aligned_cols=42 Identities=10% Similarity=0.249 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 020751 136 YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 177 (322)
Q Consensus 136 s~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~d 177 (322)
.+.|...++++...|+.|.+++++....+..+.+-|..++..
T Consensus 88 ~D~L~k~q~~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~s 129 (464)
T 1m1j_B 88 QTTLLKQEKTVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNK 129 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 444455555566666666666665554444433333333333
No 39
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=73.89 E-value=5.6 Score=32.16 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=27.2
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchh
Q 020751 140 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK 179 (322)
Q Consensus 140 aaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls 179 (322)
..|++.|..||+.++..+++..+....++++++.+...+.
T Consensus 87 ~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~ 126 (133)
T 1fxk_C 87 EDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAE 126 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777777777666555433
No 40
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=73.53 E-value=21 Score=27.06 Aligned_cols=59 Identities=17% Similarity=0.206 Sum_probs=32.8
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020751 145 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 145 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
....|.+.+..++.+...-.....++|..++..+..+..|++....-+.....||..-+
T Consensus 17 ~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae 75 (81)
T 1ic2_A 17 NALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555566666666666666666665555555555554443
No 41
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=73.08 E-value=17 Score=26.27 Aligned_cols=58 Identities=17% Similarity=0.238 Sum_probs=41.9
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020751 146 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 146 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
|.+++.++..|++...-|...-..+|......++.....-..-+..+..||.|+.+++
T Consensus 3 ~~~~~~~le~k~~~~e~iv~~l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~ 60 (66)
T 3m0a_A 3 LLQRCESLEKKTATFENIVCVLNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLE 60 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHH
Confidence 5667777777777766666666667777777777666665566778888888887765
No 42
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=72.94 E-value=9.5 Score=27.63 Aligned_cols=49 Identities=10% Similarity=0.206 Sum_probs=23.5
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHH
Q 020751 150 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLG 212 (322)
Q Consensus 150 Id~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~G 212 (322)
++.|..++..++.++..|.+|| +.=..+...|+.++++...+-..++.-
T Consensus 11 Ld~L~~~v~~lk~~a~~Ig~El--------------~~Qn~lLd~l~~~~d~~~~~l~~~~~r 59 (65)
T 1gl2_D 11 LDALSSIISRQKQMGQEIGNEL--------------DEQNEIIDDLANLVENTDEKLRTEARR 59 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444445554444444 444445555555555555444444443
No 43
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=72.82 E-value=33 Score=27.00 Aligned_cols=67 Identities=22% Similarity=0.298 Sum_probs=42.9
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHH
Q 020751 130 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 196 (322)
Q Consensus 130 KqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le 196 (322)
|+.++-.+.+..--..|..||..+...+|...+--...+.++.+.....+.--.++.++++-++-||
T Consensus 33 k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 33 KQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4444444444444555677777777777777776666666666666666666667777776666555
No 44
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=72.24 E-value=2.8 Score=29.61 Aligned_cols=30 Identities=13% Similarity=0.313 Sum_probs=22.0
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 020751 142 AQRQLSSKITSVDRDVNKIVEISQATQEEV 171 (322)
Q Consensus 142 aKrhLsqRId~vD~klDeq~eis~~i~~eV 171 (322)
+|.+|-|.|++||..++...+-+...++..
T Consensus 3 tk~~l~qkI~kVdrEI~Kte~kI~~lqkKl 32 (42)
T 2l5g_B 3 SKEELIQNMDRVDREITMVEQQISKLKKKQ 32 (42)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999998877665555544444
No 45
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=71.94 E-value=23 Score=36.43 Aligned_cols=74 Identities=14% Similarity=0.197 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHH----HHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhH
Q 020751 135 VYSSISAAQRQLSSKITSVDRDVNKIVEISQA----TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 208 (322)
Q Consensus 135 Vs~sLaaaKrhLsqRId~vD~klDeq~eis~~----i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~ 208 (322)
+...|-.+-+-|+.||+.|-.++++...-.+. ++..+..++.++.+.++--..+.++-..||.+|..|+.+-|-
T Consensus 51 LQglLdkqErDltkrINELKnqLEdlsKnsKdseqy~k~~~E~Lr~rq~q~~dNdNtynE~S~ELRRrIqyLKekVdn 128 (562)
T 3ghg_A 51 MKGLIDEVNQDFTNRINKLKNSLFEYQKNNKDSHSLTTNIMEILRGDFSSANNRDNTYNRVSEDLRSRIEVLKRKVIE 128 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred hhhhHHhhcCcHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999988655554 455566777777777733333444444777777777766443
No 46
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=71.81 E-value=12 Score=26.47 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=17.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHH
Q 020751 153 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 197 (322)
Q Consensus 153 vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 197 (322)
++.+++++.+.-..++.+..+.+..+.+.-.++..++.-+..+..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~ 54 (60)
T 3htk_A 10 LENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444443333334444444444444444444444433333333
No 47
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=71.40 E-value=27 Score=25.51 Aligned_cols=30 Identities=13% Similarity=0.247 Sum_probs=17.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhHhhh
Q 020751 124 ACNSVARQLEDVYSSISAAQRQLSSKITSV 153 (322)
Q Consensus 124 Av~svtKqLeqVs~sLaaaKrhLsqRId~v 153 (322)
.+..+++++.+..+.|...-..|.++|+.|
T Consensus 13 ~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L 42 (93)
T 4ioe_A 13 ELERIAGNFKNAAGEAQSQINRLEGDINSL 42 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666666665
No 48
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=70.92 E-value=37 Score=26.87 Aligned_cols=81 Identities=15% Similarity=0.164 Sum_probs=56.9
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHH
Q 020751 142 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRAR 221 (322)
Q Consensus 142 aKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~f~~ 221 (322)
=+....-|.+.+..++.+..+-.....+||..++..+..+..|++..+.-+...-.|+..-+..-.-+-..|..|-.-+.
T Consensus 17 e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriq 96 (101)
T 3u1c_A 17 DKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQ 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777777777777777888888888888888888888888877777777777666555555556666654443
Q ss_pred h
Q 020751 222 E 222 (322)
Q Consensus 222 ~ 222 (322)
-
T Consensus 97 l 97 (101)
T 3u1c_A 97 L 97 (101)
T ss_dssp H
T ss_pred H
Confidence 3
No 49
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=70.45 E-value=29 Score=25.38 Aligned_cols=53 Identities=15% Similarity=0.187 Sum_probs=32.2
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH-----HHHHHHHHHHHHhhcchhhhh
Q 020751 130 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIV-----EISQATQEEVTILRGRSKLIG 182 (322)
Q Consensus 130 KqLeqVs~sLaaaKrhLsqRId~vD~klDeq~-----eis~~i~~eV~~v~~dls~ig 182 (322)
.+|+++...+..+...|.+.+++|...++... +-.....++..+.+..+.++.
T Consensus 12 e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~ 69 (93)
T 4ioe_A 12 EELERIAGNFKNAAGEAQSQINRLEGDINSLEGQWAGATQAKFRGEFIQSKQAMQQYI 69 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHH
Confidence 46777777777888887777777777777653 233344444444444433333
No 50
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=70.29 E-value=18 Score=27.88 Aligned_cols=46 Identities=15% Similarity=0.167 Sum_probs=25.6
Q ss_pred HHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 020751 171 VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 216 (322)
Q Consensus 171 V~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~L 216 (322)
|..++.=--.||.+++.=..++..|+.|+++...+=..+|.-+..|
T Consensus 38 v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~l 83 (87)
T 1sfc_D 38 IGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 83 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3333333344555556666666666666666666666665555443
No 51
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=69.82 E-value=26 Score=25.36 Aligned_cols=35 Identities=11% Similarity=0.125 Sum_probs=18.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHH
Q 020751 180 LIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVK 214 (322)
Q Consensus 180 ~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~ 214 (322)
.||.+++.=..++..|+.++++...+=..++.-+.
T Consensus 28 ~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~ 62 (66)
T 1n7s_D 28 DMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444444455555555565555555555554443
No 52
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=69.80 E-value=34 Score=25.93 Aligned_cols=65 Identities=14% Similarity=0.213 Sum_probs=50.3
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHh
Q 020751 146 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITT 210 (322)
Q Consensus 146 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn 210 (322)
+..+|+.+-...|...+=......++.+..........++.+++.-+..||.-++..+..=.-++
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~ 68 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777777777777777777778777888888899999999999999998888776644433
No 53
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=69.66 E-value=37 Score=26.35 Aligned_cols=35 Identities=9% Similarity=0.158 Sum_probs=17.2
Q ss_pred HHHHHHhHHHHHHHHH---HHHHHHHHhHhhhhhhHHH
Q 020751 125 CNSVARQLEDVYSSIS---AAQRQLSSKITSVDRDVNK 159 (322)
Q Consensus 125 v~svtKqLeqVs~sLa---aaKrhLsqRId~vD~klDe 159 (322)
...+.+.++++.+.|. .-+..+.++|+.+...++.
T Consensus 5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~ 42 (112)
T 1l8d_A 5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEE 42 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555544443 3344555555555555544
No 54
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=69.27 E-value=31 Score=25.27 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 020751 131 QLEDVYSSISAAQRQLSSKITSVDRDVNK 159 (322)
Q Consensus 131 qLeqVs~sLaaaKrhLsqRId~vD~klDe 159 (322)
+|+++...+..+..+|.+.+++|+..++.
T Consensus 13 ~l~~~A~~~~~~~~~i~~~l~~L~~~v~~ 41 (99)
T 3zbh_A 13 ELRGVARQYNVESSNVTELIARLDQMSHT 41 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444555555544444444
No 55
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=69.21 E-value=17 Score=27.60 Aligned_cols=40 Identities=15% Similarity=0.258 Sum_probs=29.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 020751 179 KLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCD 218 (322)
Q Consensus 179 s~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~ 218 (322)
..||.|++.=..++..|+.++++...+=..++.-+..+..
T Consensus 36 ~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~ 75 (82)
T 2nps_D 36 QRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSH 75 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666777777888888888888887778777777654
No 56
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=68.50 E-value=10 Score=28.91 Aligned_cols=57 Identities=14% Similarity=0.165 Sum_probs=40.3
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020751 148 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 204 (322)
Q Consensus 148 qRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~ 204 (322)
..++.|..++..++.++..|.+||.+=-.=|..+..+++.....+..--.|+..+-.
T Consensus 19 ~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~ 75 (82)
T 2nps_D 19 EQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSH 75 (82)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777777777777777777777777777777777777766666666666543
No 57
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=68.33 E-value=12 Score=28.86 Aligned_cols=54 Identities=9% Similarity=0.129 Sum_probs=37.7
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020751 144 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 204 (322)
Q Consensus 144 rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~ 204 (322)
..|..||+.|..|+--|....+...+.|+.-+.. |+.++.-+..|-.|+..++.
T Consensus 10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~-------Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 10 QELEARLVELETRLSFQEQALTELSEALADARLT-------GARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhh
Confidence 4577899999999988888888888888766665 66666666666677776664
No 58
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=67.34 E-value=8.3 Score=32.06 Aligned_cols=39 Identities=10% Similarity=0.159 Sum_probs=26.6
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcch
Q 020751 140 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRS 178 (322)
Q Consensus 140 aaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dl 178 (322)
..|++.|..||+.++..++...+..+.++++++.+...+
T Consensus 97 ~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l 135 (151)
T 2zdi_C 97 DEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKA 135 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777777777777666555543
No 59
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=66.90 E-value=45 Score=32.73 Aligned_cols=49 Identities=16% Similarity=0.250 Sum_probs=27.7
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHhhcc
Q 020751 177 RSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARELEN 225 (322)
Q Consensus 177 dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~f~~~~~~ 225 (322)
+.+.+.+++..+..++..-|..|..++..-+-.+.-|..|-+-+..+++
T Consensus 85 ~skkml~~~~~~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~ 133 (409)
T 1m1j_C 85 KSKKIIEEIIRYENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLES 133 (409)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3344555555555555555566666665544455566666665555554
No 60
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=65.95 E-value=33 Score=26.36 Aligned_cols=58 Identities=7% Similarity=0.163 Sum_probs=32.1
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751 145 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 202 (322)
Q Consensus 145 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 202 (322)
+.-+.++.|...+..++.+...|.+||..=-.=|..|..+++.....+..--.|+..+
T Consensus 26 eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~l 83 (87)
T 1sfc_D 26 EMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKM 83 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555556666655555555566666666665555555555544
No 61
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=65.83 E-value=13 Score=26.98 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=34.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhh
Q 020751 129 ARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL 180 (322)
Q Consensus 129 tKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ 180 (322)
-.+|+.++..+...| +++..| ...+++|.++...+.++|......+..
T Consensus 8 D~~Ld~L~~~v~~lk-~~a~~I---g~El~~Qn~lLd~l~~~~d~~~~~l~~ 55 (65)
T 1gl2_D 8 DAGLDALSSIISRQK-QMGQEI---GNELDEQNEIIDDLANLVENTDEKLRT 55 (65)
T ss_dssp CHHHHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888887654 566554 678999999988888888766665443
No 62
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=64.81 E-value=13 Score=26.50 Aligned_cols=36 Identities=8% Similarity=0.345 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhh
Q 020751 121 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRD 156 (322)
Q Consensus 121 MsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~k 156 (322)
|.+.+..+-..+-.+-....++...|.|||..+..+
T Consensus 10 Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~ 45 (46)
T 3swy_A 10 LGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQ 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555555555555556678999999999998765
No 63
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=63.89 E-value=44 Score=33.02 Aligned_cols=88 Identities=13% Similarity=0.129 Sum_probs=36.1
Q ss_pred chhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHh-------hhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhH
Q 020751 112 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKIT-------SVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 184 (322)
Q Consensus 112 DlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId-------~vD~klDeq~eis~~i~~eV~~v~~dls~ig~D 184 (322)
|+|.==.++..+-+..|-..|++|+.+=+.|+..+..=-+ ...+..|-..+-++.+.+|+.....-+.+....
T Consensus 27 d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~ 106 (411)
T 3ghg_C 27 DFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSS 106 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4444444444455555555555554444444332221111 112222334444444444444444444444444
Q ss_pred HHHHHHHHHHHHHHH
Q 020751 185 FQSVRDIVQTLESKL 199 (322)
Q Consensus 185 v~~v~~~V~~Le~Ki 199 (322)
|..++.++...+.||
T Consensus 107 i~~l~~~~~~~~~~i 121 (411)
T 3ghg_C 107 IRYLQEIYNSNNQKI 121 (411)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 64
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=63.86 E-value=81 Score=28.13 Aligned_cols=40 Identities=8% Similarity=0.087 Sum_probs=21.1
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHH
Q 020751 147 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQ 186 (322)
Q Consensus 147 sqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~ 186 (322)
..||+.+.+++.+.++-.+..++++.++...++.+..++.
T Consensus 103 ~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~ 142 (256)
T 3na7_A 103 KERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLAL 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555555555555443
No 65
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=63.49 E-value=37 Score=25.31 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=38.7
Q ss_pred HHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh----hhHHhHHHHHHHHHHHhhcc
Q 020751 168 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK----QDITTLGVKKLCDRARELEN 225 (322)
Q Consensus 168 ~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~k----Qd~Tn~GV~~LC~f~~~~~~ 225 (322)
.+++..+..++..++.=+..+..+|..=+.-|++||++ ++.+..|...|-.+..--+.
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~ 70 (77)
T 1jth_B 9 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSK 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555666666777777787778888888877 66677788888776653333
No 66
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=62.49 E-value=42 Score=24.41 Aligned_cols=28 Identities=11% Similarity=0.194 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 020751 132 LEDVYSSISAAQRQLSSKITSVDRDVNK 159 (322)
Q Consensus 132 LeqVs~sLaaaKrhLsqRId~vD~klDe 159 (322)
|+++...+..+..+|.+.++.|+..++.
T Consensus 11 l~~~A~~~~~~~~~l~~~l~~L~~~~~~ 38 (97)
T 2vs0_A 11 IRAKSQSYGQGSDQIRQILSDLTRAQGE 38 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444443
No 67
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=62.19 E-value=30 Score=24.34 Aligned_cols=47 Identities=15% Similarity=0.236 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 020751 131 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 177 (322)
Q Consensus 131 qLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~d 177 (322)
.++.-.+....-.+++..+++....++++..+-...+++++.+.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445556666666666666666666666666666555443
No 68
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=62.16 E-value=23 Score=27.58 Aligned_cols=39 Identities=10% Similarity=0.326 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 020751 121 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNK 159 (322)
Q Consensus 121 MsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDe 159 (322)
|.+.+..+-..+-.+-....+++.+|.|||..|..++-.
T Consensus 12 LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~ 50 (74)
T 3swf_A 12 MESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKP 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 444455555555555555577999999999999887655
No 69
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=60.96 E-value=34 Score=25.14 Aligned_cols=54 Identities=11% Similarity=0.076 Sum_probs=38.9
Q ss_pred HHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh----hhHHhHHHHHHHHHHHh
Q 020751 169 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK----QDITTLGVKKLCDRARE 222 (322)
Q Consensus 169 ~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~k----Qd~Tn~GV~~LC~f~~~ 222 (322)
+++..+..++..++.=+..+..+|..=+.-|++||++ ++.+..|...|-.+..-
T Consensus 6 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~ 63 (71)
T 2nps_B 6 TAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYY 63 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666667788888888888899999887 56666777777665543
No 70
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=60.89 E-value=46 Score=24.31 Aligned_cols=76 Identities=12% Similarity=0.158 Sum_probs=43.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhh-----HHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHH
Q 020751 124 ACNSVARQLEDVYSSISAAQRQLSSKITSVDRD-----VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 198 (322)
Q Consensus 124 Av~svtKqLeqVs~sLaaaKrhLsqRId~vD~k-----lDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 198 (322)
.+..+++++.+..+.|...-..|.+.|+.|... =+...+.....+..+..+..-|..|...+.......+.-|.+
T Consensus 13 ~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~d~~ 92 (99)
T 3zbh_A 13 ELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQ 92 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777777777777777777776322 233334444445555555555555555555555555555544
Q ss_pred H
Q 020751 199 L 199 (322)
Q Consensus 199 i 199 (322)
+
T Consensus 93 ~ 93 (99)
T 3zbh_A 93 I 93 (99)
T ss_dssp H
T ss_pred H
Confidence 4
No 71
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=59.65 E-value=58 Score=35.46 Aligned_cols=18 Identities=11% Similarity=0.337 Sum_probs=7.5
Q ss_pred HHhHhhhhhhHHHHHHHH
Q 020751 147 SSKITSVDRDVNKIVEIS 164 (322)
Q Consensus 147 sqRId~vD~klDeq~eis 164 (322)
..++..++.++++..+-.
T Consensus 983 ~~~v~~L~~e~~~l~~~~ 1000 (1080)
T 2dfs_A 983 TNRVLSLQEEIAKLRKEL 1000 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444443333
No 72
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=59.42 E-value=36 Score=26.59 Aligned_cols=60 Identities=15% Similarity=0.311 Sum_probs=34.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHh
Q 020751 123 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEI 202 (322)
Q Consensus 123 nAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~i 202 (322)
..|++++..|+.+... -..|..||..+...|++..+=+...+.|+ +.+.+.|++||+++
T Consensus 6 ~e~e~~~~klq~~E~r----N~~Le~~v~~le~~Le~s~~~q~~~~~El-----------------k~l~e~Ld~KI~eL 64 (79)
T 3cvf_A 6 AEREETQQKVQDLETR----NAELEHQLRAMERSLEEARAERERARAEV-----------------GRAAQLLDVSLFEL 64 (79)
T ss_dssp ----CTTHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh----hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhhHHHHH
Confidence 3455555555443322 34477777777777777777777776666 34445566666665
Q ss_pred h
Q 020751 203 E 203 (322)
Q Consensus 203 E 203 (322)
.
T Consensus 65 ~ 65 (79)
T 3cvf_A 65 S 65 (79)
T ss_dssp H
T ss_pred H
Confidence 4
No 73
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=58.29 E-value=1.2e+02 Score=30.05 Aligned_cols=92 Identities=11% Similarity=0.177 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcc------------------hhhhhhHHHHHHHHHHHH
Q 020751 134 DVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR------------------SKLIGDEFQSVRDIVQTL 195 (322)
Q Consensus 134 qVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~d------------------ls~ig~Dv~~v~~~V~~L 195 (322)
.+.+.|....+.....|+.|...|++....+..+.+-|..++.. .+.+-+++..+..++...
T Consensus 24 gl~d~L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~ 103 (411)
T 3ghg_C 24 GIADFLSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTH 103 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 35677777777777888888888888877777777776666552 223556666666667777
Q ss_pred HHHHHHhhhhhhHHhHHHHHHHHHHHhhcc
Q 020751 196 ESKLIEIEGKQDITTLGVKKLCDRARELEN 225 (322)
Q Consensus 196 e~Ki~~iE~kQd~Tn~GV~~LC~f~~~~~~ 225 (322)
+..|..++..-+.-+.-|..|-+-+..++.
T Consensus 104 ~~~i~~l~~~~~~~~~~i~~L~~~v~~l~~ 133 (411)
T 3ghg_C 104 DSSIRYLQEIYNSNNQKIVNLKEKVAQLEA 133 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777666666667777666666554
No 74
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=58.22 E-value=22 Score=25.44 Aligned_cols=41 Identities=12% Similarity=0.305 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHH
Q 020751 120 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKI 160 (322)
Q Consensus 120 nMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq 160 (322)
|..+-.+.|-+=|+|+++-....-..+..|||.+..++|+.
T Consensus 3 ~~~dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdL 43 (48)
T 3ci9_A 3 TVQDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDL 43 (48)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34444555555677777777777777888888888777764
No 75
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=58.12 E-value=98 Score=27.23 Aligned_cols=81 Identities=16% Similarity=0.219 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHH
Q 020751 119 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 198 (322)
Q Consensus 119 RnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 198 (322)
+.+.++...+-+.+-++...|..=|+-.+++=+.. -+...=......|+..++...+..-.|...++..+..||..
T Consensus 58 ~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~----~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe 133 (168)
T 3o0z_A 58 RILENSKSQTDKDYYQLQAILEAERRDRGHDSEMI----GDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKE 133 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555554443222221111 01111122334455555555556666667777777777766
Q ss_pred HHHhh
Q 020751 199 LIEIE 203 (322)
Q Consensus 199 i~~iE 203 (322)
-..+|
T Consensus 134 ~a~~e 138 (168)
T 3o0z_A 134 KNNLE 138 (168)
T ss_dssp HHHHH
T ss_pred HHhhh
Confidence 65555
No 76
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=57.90 E-value=43 Score=26.11 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhcchhhhhhHHHHHHHH
Q 020751 165 QATQEEVTILRGRSKLIGDEFQSVRDI 191 (322)
Q Consensus 165 ~~i~~eV~~v~~dls~ig~Dv~~v~~~ 191 (322)
..++.||..+|+.++....+++.+++-
T Consensus 30 ~~Lq~Ev~~LRGqiE~~~~~l~ql~~r 56 (83)
T 2xdj_A 30 SDNQSDIDSLRGQIQENQYQLNQVVER 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345556666666666666666655543
No 77
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=57.45 E-value=38 Score=33.95 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 020751 138 SISAAQRQLSSKITSVDRDVNKIVEISQATQE 169 (322)
Q Consensus 138 sLaaaKrhLsqRId~vD~klDeq~eis~~i~~ 169 (322)
++-..+|.+..+++.+..+ .++++++|..
T Consensus 74 ~ld~~~r~~~~~~~~l~~~---rn~~sk~i~~ 102 (501)
T 1wle_A 74 STWQELRQLREQIRSLEEE---KEAVTEAVRA 102 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 3455667777777766654 4455555554
No 78
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=57.36 E-value=56 Score=24.16 Aligned_cols=19 Identities=0% Similarity=0.298 Sum_probs=7.4
Q ss_pred hhhhHHHHHHHHHHHHHHH
Q 020751 153 VDRDVNKIVEISQATQEEV 171 (322)
Q Consensus 153 vD~klDeq~eis~~i~~eV 171 (322)
.+.++++..++-..|.+++
T Consensus 60 ~~~~~~~~~~~L~~i~~~L 78 (98)
T 3gwk_C 60 LSPKITEFAQLLEDINQQL 78 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 79
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=57.09 E-value=70 Score=25.25 Aligned_cols=52 Identities=12% Similarity=0.210 Sum_probs=23.7
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHH
Q 020751 144 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 195 (322)
Q Consensus 144 rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~L 195 (322)
..|+.||+.+...+|...+--...++.+.+.....+.--.++.++++-++-|
T Consensus 47 ~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriqll 98 (101)
T 3u1c_A 47 VQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLV 98 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555444444444444444333333444444444444433
No 80
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=56.77 E-value=56 Score=25.13 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=27.3
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 020751 144 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 189 (322)
Q Consensus 144 rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 189 (322)
..|..||..+...|++...=+...+.|+.-+.+.+.-=-+|+..++
T Consensus 17 ~~Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~KI~eL~elr 62 (72)
T 3cve_A 17 KDLEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGKIFELTELR 62 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3466677777777777776666666666555554444444444444
No 81
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=56.46 E-value=49 Score=33.50 Aligned_cols=46 Identities=15% Similarity=0.149 Sum_probs=33.3
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHH
Q 020751 142 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS 187 (322)
Q Consensus 142 aKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~ 187 (322)
-=.+|-.||.-++.++|.+..-....|..|...+.++.++..||..
T Consensus 112 ~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 112 VSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356677888888888888877777777777777666666666553
No 82
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=55.98 E-value=1.1e+02 Score=27.21 Aligned_cols=98 Identities=15% Similarity=0.199 Sum_probs=63.1
Q ss_pred hhhhHHHHHHH---HHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH----HHHhhcchhhhhhHHHHHH
Q 020751 117 TRRSLSDACNS---VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE----VTILRGRSKLIGDEFQSVR 189 (322)
Q Consensus 117 TKRnMsnAv~s---vtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~e----V~~v~~dls~ig~Dv~~v~ 189 (322)
++..+.++.++ +-+-||.==+.+...-++|..++.++...+++.+.=-...+.+ ++.++.++.......+.++
T Consensus 29 le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~ 108 (189)
T 2v71_A 29 ARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLH 108 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433 2233333344455666778888888888888876666666666 7777777777777777777
Q ss_pred HHHHHHHHHHHHhhhhhhHHhHHHH
Q 020751 190 DIVQTLESKLIEIEGKQDITTLGVK 214 (322)
Q Consensus 190 ~~V~~Le~Ki~~iE~kQd~Tn~GV~ 214 (322)
.-+..||-+=|.+|.+--++..-+.
T Consensus 109 ~~ireLEq~NDdlEr~~R~~~~Sle 133 (189)
T 2v71_A 109 KYVRELEQANDDLERAKRATIMSLE 133 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhHH
Confidence 7777777777777766555554443
No 83
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=55.88 E-value=66 Score=24.53 Aligned_cols=34 Identities=15% Similarity=0.292 Sum_probs=23.8
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHH
Q 020751 130 RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEI 163 (322)
Q Consensus 130 KqLeqVs~sLaaaKrhLsqRId~vD~klDeq~ei 163 (322)
-+|++....|..+.++|...|+.|+..++.....
T Consensus 14 ~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~ 47 (103)
T 4i0x_B 14 DHIEQVTSRARGFKEFVTENLDQLESRAQKLVQS 47 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3566666777777777777777777777766655
No 84
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=55.74 E-value=63 Score=27.42 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=53.9
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHH
Q 020751 148 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKK 215 (322)
Q Consensus 148 qRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~ 215 (322)
.||+.+..+|.+.+.+.+.......++..++..+..|++.--.-+...|.|+..++..=.....-+.-
T Consensus 52 Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKs 119 (147)
T 2b9c_A 52 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKS 119 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777777888888888888889999999999999999999999999999888765544444433
No 85
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=55.67 E-value=73 Score=25.04 Aligned_cols=46 Identities=15% Similarity=0.281 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHH-------hhcchhhhhhHHHHHHHHHHHHHHHHHH
Q 020751 156 DVNKIVEISQATQEEVTI-------LRGRSKLIGDEFQSVRDIVQTLESKLIE 201 (322)
Q Consensus 156 klDeq~eis~~i~~eV~~-------v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ 201 (322)
.+++-++-.....+++.+ +.....+...+....+.-+++|=+||+.
T Consensus 28 EieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e~ 80 (81)
T 2jee_A 28 EIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRMEE 80 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 444444444444444444 5556666666666677666666666543
No 86
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=55.31 E-value=52 Score=23.70 Aligned_cols=58 Identities=7% Similarity=0.150 Sum_probs=38.5
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHH
Q 020751 144 RQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 201 (322)
Q Consensus 144 rhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ 201 (322)
++.-+.++.|..++..++.++..|.+|+..=-.=|..|..+++.....+..--.|+..
T Consensus 6 ~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ 63 (66)
T 1n7s_D 6 NEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATK 63 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3445566667777777777777777777766666677777777777666555555544
No 87
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A
Probab=55.09 E-value=53 Score=23.26 Aligned_cols=23 Identities=13% Similarity=0.300 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHhhcchhhhhh
Q 020751 161 VEISQATQEEVTILRGRSKLIGD 183 (322)
Q Consensus 161 ~eis~~i~~eV~~v~~dls~ig~ 183 (322)
..++.++++-++.++.-++.+..
T Consensus 65 ~~~shel~tpl~~i~~~~e~l~~ 87 (114)
T 3zcc_A 65 AGVSHDLRTPLTRIRLATEMMSE 87 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCG
T ss_pred HHhhHHHcChHHHHHHHHHHHHH
Confidence 34445555555555554444433
No 88
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=54.57 E-value=75 Score=24.90 Aligned_cols=65 Identities=17% Similarity=0.298 Sum_probs=40.8
Q ss_pred hhHHHHHHHHH---HhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHH
Q 020751 119 RSLSDACNSVA---RQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 195 (322)
Q Consensus 119 RnMsnAv~svt---KqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~L 195 (322)
++|.+-+.++= ++|-..-.+|.-+|+.|..|+|.|.+.-+ .+..++.+++++-..+
T Consensus 5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e---------------------~l~~El~s~~~~~~r~ 63 (77)
T 2w83_C 5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKD---------------------VLQGELEAVKQAKLKL 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---------------------HHHHHHHHHHHHHHHH
Confidence 34555555553 34444566888899999998887766433 2345577888888888
Q ss_pred HHHHHHhhh
Q 020751 196 ESKLIEIEG 204 (322)
Q Consensus 196 e~Ki~~iE~ 204 (322)
+.|+.++|.
T Consensus 64 ~~ri~elEe 72 (77)
T 2w83_C 64 EEKNRELEE 72 (77)
T ss_dssp HHHC-----
T ss_pred HHHHHHHHH
Confidence 888888774
No 89
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=54.45 E-value=40 Score=24.78 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHHH
Q 020751 132 LEDVYSSISAAQRQLSSKITSVDRDVNK 159 (322)
Q Consensus 132 LeqVs~sLaaaKrhLsqRId~vD~klDe 159 (322)
|++....|....++|.+.|+.|+..++.
T Consensus 10 l~~~a~~~~~~~~~i~~~l~~l~~~v~~ 37 (94)
T 3fav_B 10 IEAAASAIQGNVTSIHSLLDEGKQSLTK 37 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433
No 90
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=54.12 E-value=62 Score=29.75 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHhhcchhhhhhHHH
Q 020751 160 IVEISQATQEEVTILRGRSKLIGDEFQ 186 (322)
Q Consensus 160 q~eis~~i~~eV~~v~~dls~ig~Dv~ 186 (322)
..+++.+++.+|.+.+.++.-.++|++
T Consensus 207 l~~~~~~~~qq~e~f~~~~~p~~e~~~ 233 (273)
T 3s84_A 207 LAELGGHLDQQVEEFRRRVEPYGENFN 233 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhhHHHHH
Confidence 345668888888888888887777764
No 91
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=53.93 E-value=69 Score=24.21 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=38.0
Q ss_pred HHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh----hhHHhHHHHHHHHHHH
Q 020751 167 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK----QDITTLGVKKLCDRAR 221 (322)
Q Consensus 167 i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~k----Qd~Tn~GV~~LC~f~~ 221 (322)
=.+++..+..++..++.=+..+..+|..=+.-|++||++ ++.+..|...|..+..
T Consensus 19 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~ 77 (83)
T 1sfc_B 19 RHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVK 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666777777788888899999877 5566677777766553
No 92
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=53.43 E-value=65 Score=25.13 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=44.3
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHH
Q 020751 118 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQE 169 (322)
Q Consensus 118 KRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~ 169 (322)
...|..=|.++-.+|++-...=...|.+|.+=++.+|-|+++..++-..+..
T Consensus 22 N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak 73 (79)
T 3cvf_A 22 NAELEHQLRAMERSLEEARAERERARAEVGRAAQLLDVSLFELSELREGLAR 73 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4467778888888888888888888899999999999999999988777654
No 93
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=52.89 E-value=56 Score=24.49 Aligned_cols=65 Identities=11% Similarity=0.077 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhhHH------------HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHH
Q 020751 132 LEDVYSSISAAQRQLSSKITSVDRDVN------------KIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLE 196 (322)
Q Consensus 132 LeqVs~sLaaaKrhLsqRId~vD~klD------------eq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le 196 (322)
|++....+.....+|.+.|+.|+..++ ...+....-+..+.++..-|..|..-+.........-|
T Consensus 12 l~~~A~~~~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~l~~~a~~y~~~d 88 (101)
T 3fav_A 12 LAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGVQYSRAD 88 (101)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444445555555555555544443 23344444444444444444444444444444433333
No 94
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=51.41 E-value=76 Score=26.05 Aligned_cols=25 Identities=8% Similarity=0.239 Sum_probs=11.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhh
Q 020751 180 LIGDEFQSVRDIVQTLESKLIEIEG 204 (322)
Q Consensus 180 ~ig~Dv~~v~~~V~~Le~Ki~~iE~ 204 (322)
.+...++.++.+...|+.||+..+.
T Consensus 92 ~l~~~i~~L~~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 92 ELKNRIDVMQEALDRLDFKIDNYDT 116 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444555555554443
No 95
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=51.10 E-value=59 Score=23.86 Aligned_cols=37 Identities=19% Similarity=0.170 Sum_probs=20.7
Q ss_pred HHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020751 167 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 167 i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
-.++|......++.....-..=++.+..||.|+.+.+
T Consensus 25 l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~ 61 (65)
T 3m0d_C 25 LNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQ 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 3334444444444443333333777778888877665
No 96
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=50.77 E-value=1.1e+02 Score=25.44 Aligned_cols=96 Identities=14% Similarity=0.260 Sum_probs=59.1
Q ss_pred eEEeccCCcCchhhhhhhhHHHHHHHHHHhHHHH-----------HHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 020751 102 YVWWKGWKLPDMMFATRRSLSDACNSVARQLEDV-----------YSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE 170 (322)
Q Consensus 102 YmwWKGwsfSDlMfVTKRnMsnAv~svtKqLeqV-----------s~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~e 170 (322)
-.+.-+-+.-|=+|+-|.-..++++.+-.-..+- ++.+..++++|..-|+.+.+.|++..+...-+..+
T Consensus 17 ~~~~~~ms~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~n 96 (130)
T 4dnd_A 17 NLYFQSMSLEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEAN 96 (130)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ceeeecCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344566677999998888888887776655542 12467888888888888888888887777655433
Q ss_pred HHHhhcchhhhh---hHHHHHHHHHHHHHHHHHHhhh
Q 020751 171 VTILRGRSKLIG---DEFQSVRDIVQTLESKLIEIEG 204 (322)
Q Consensus 171 V~~v~~dls~ig---~Dv~~v~~~V~~Le~Ki~~iE~ 204 (322)
= +.|+ .|+..=++.|..++.+|..|+.
T Consensus 97 p-------~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~ 126 (130)
T 4dnd_A 97 P-------GKFKLPAGDLQERKVFVERMREAVQEMKD 126 (130)
T ss_dssp H-------HHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-------HhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2322 2355556667777777777664
No 97
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=50.47 E-value=30 Score=26.85 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHhcC
Q 020751 56 LLAEVSSVQQELSHV 70 (322)
Q Consensus 56 L~aQV~~LaqElr~L 70 (322)
|..|+..|..+++.+
T Consensus 25 l~~q~~~l~~~~~e~ 39 (117)
T 2zqm_A 25 VVQQKQKVQLELTEA 39 (117)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666666666655
No 98
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=50.10 E-value=1.1e+02 Score=26.54 Aligned_cols=21 Identities=5% Similarity=-0.067 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 020751 185 FQSVRDIVQTLESKLIEIEGK 205 (322)
Q Consensus 185 v~~v~~~V~~Le~Ki~~iE~k 205 (322)
++.+++-...|--.+..+|.+
T Consensus 98 ~e~l~DEl~aLqlq~n~lE~k 118 (152)
T 3a7p_A 98 TERLNAALISGTIENNVLQQK 118 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444
No 99
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=49.83 E-value=1.4e+02 Score=26.38 Aligned_cols=15 Identities=0% Similarity=0.224 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHhcC
Q 020751 56 LLAEVSSVQQELSHV 70 (322)
Q Consensus 56 L~aQV~~LaqElr~L 70 (322)
+..-|+..+.+-..|
T Consensus 71 i~~~I~~IA~QTNLL 85 (227)
T 1qu7_A 71 IISVIDGIAFQTNIL 85 (227)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444433
No 100
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=49.57 E-value=1.1e+02 Score=25.20 Aligned_cols=69 Identities=12% Similarity=0.217 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHH
Q 020751 119 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDI 191 (322)
Q Consensus 119 RnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~ 191 (322)
|.|...++.+..-+|+.-+-+...++.-..-|..|.+.+++..+.-..++..+ ++|++-.+|++-=.++
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~i----ReLEq~NDDLER~~R~ 74 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYV----RELEQANDDLERAKRA 74 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhchHHHHHHHH
Confidence 44556666677777777777777777777777777766666555444444443 5666667777655444
No 101
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=49.44 E-value=66 Score=26.37 Aligned_cols=59 Identities=3% Similarity=-0.013 Sum_probs=45.2
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 020751 142 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 200 (322)
Q Consensus 142 aKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 200 (322)
=|--|.=.||-|-++|+++.|.-.+++.|-.+-..+++........++.-+..|...|.
T Consensus 24 EKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~ 82 (103)
T 4h22_A 24 EKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALK 82 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778999999999999999999999888877777666666666655555555443
No 102
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=48.95 E-value=1e+02 Score=24.76 Aligned_cols=73 Identities=10% Similarity=0.145 Sum_probs=54.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhh-hhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHH
Q 020751 125 CNSVARQLEDVYSSISAAQRQLSSKITSVD-RDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 197 (322)
Q Consensus 125 v~svtKqLeqVs~sLaaaKrhLsqRId~vD-~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 197 (322)
+...+++|++.-+.|...=..|..+.++|+ +.=++.....+..++-+..++.-.+.....|.-++..++-||.
T Consensus 11 lr~Fa~~L~~F~d~Lq~~~~~L~~~f~~L~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~vle~ 84 (94)
T 3fx7_A 11 VREFVGHLERFKELLREEVNSLSNHFHNLESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIRVLEE 84 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHHHhHH
Confidence 456789999999999999999999999998 5555556666666666666666666666667777766665554
No 103
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=48.82 E-value=34 Score=37.09 Aligned_cols=23 Identities=13% Similarity=0.242 Sum_probs=11.5
Q ss_pred CCCCcchhhhhhhHHHHHHhhhh
Q 020751 19 EGRLSSVSDAVGGTLKIVSKLIK 41 (322)
Q Consensus 19 nGkLsDv~~~lsgalk~l~K~lk 41 (322)
.|+.+-+...+..-|..|++.|.
T Consensus 652 ~~~~~tv~~~f~~~l~~L~~~l~ 674 (1184)
T 1i84_S 652 KGMFRTVGQLYKEQLTKLMTTLR 674 (1184)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcHHHHHHHHHHHHHHHHH
Confidence 34455565555555556665554
No 104
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=47.98 E-value=54 Score=25.31 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=30.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHH---hHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 020751 125 CNSVARQLEDVYSSISAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILR 175 (322)
Q Consensus 125 v~svtKqLeqVs~sLaaaKrhLsq---RId~vD~klDeq~eis~~i~~eV~~v~ 175 (322)
.++|++ +.++.++|...-.+|.+ ||+.++..|++-.+..+..+.++...+
T Consensus 15 ~~~mgt-i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 15 IEGRGS-LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp ----CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345555 77777777776655544 577777777777776666666664443
No 105
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=47.76 E-value=1.1e+02 Score=24.74 Aligned_cols=72 Identities=8% Similarity=0.099 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhH
Q 020751 137 SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDI 208 (322)
Q Consensus 137 ~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~ 208 (322)
+.+..-|.+|.-.|+++-.-+|+.+.=-+.=...=..+..|+..+..|++...-.-..||.|+..+..-=+|
T Consensus 30 d~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~F 101 (119)
T 3ol1_A 30 DQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIAF 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666666666666655555421111111123345566667777887777777899999888765443
No 106
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=47.71 E-value=9.8 Score=24.18 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=16.0
Q ss_pred HHHHHHHHhhcchhhhhhHHHHH
Q 020751 166 ATQEEVTILRGRSKLIGDEFQSV 188 (322)
Q Consensus 166 ~i~~eV~~v~~dls~ig~Dv~~v 188 (322)
+.++||.++++.+..+.++++.+
T Consensus 4 qlkdevgelkgevralkdevkdl 26 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVKDL 26 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHhcc
Confidence 56788888887766666666543
No 107
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=46.29 E-value=57 Score=31.60 Aligned_cols=65 Identities=9% Similarity=0.132 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 020751 139 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 216 (322)
Q Consensus 139 LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~L 216 (322)
+-..+|.+..+++.+.. +.++++++|.. .-+.|.+.+..-+..|..+|..+|....-...-+..+
T Consensus 33 ~~~~~r~~~~~~~~l~~---~~n~~sk~i~~----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (421)
T 1ses_A 33 LDREVQELKKRLQEVQT---ERNQVAKRVPK----------APPEEKEALIARGKALGEEAKRLEEALREKEARLEAL 97 (421)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHSSS----------SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHh----------hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544 34455555542 1123344444444444555555554444444444444
No 108
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=45.45 E-value=85 Score=22.78 Aligned_cols=50 Identities=16% Similarity=0.168 Sum_probs=32.8
Q ss_pred HHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh----HHhHHHHHHH
Q 020751 168 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD----ITTLGVKKLC 217 (322)
Q Consensus 168 ~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd----~Tn~GV~~LC 217 (322)
.+++..+..++..++.=+..+..+|..=+..|++||++-+ ++..|...|-
T Consensus 11 ~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~ 64 (68)
T 1n7s_B 11 HSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTK 64 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666677777778888888899988744 4445555443
No 109
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=45.25 E-value=37 Score=34.07 Aligned_cols=63 Identities=8% Similarity=0.038 Sum_probs=34.4
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020751 139 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 205 (322)
Q Consensus 139 LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~k 205 (322)
|-..+|.+..+++.+..+. ++++++|..- ....+|.+.+..++..+..-+..||.++..++.+
T Consensus 38 ld~~~r~~~~~~~~l~~~r---n~~sk~i~~~-k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~ 100 (485)
T 3qne_A 38 EYKEWVKLRFDLDEHNKKL---NSVQKEIGKR-FKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKN 100 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-HHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHH-hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777666544 4455555432 1223445555555555555555555555555544
No 110
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=45.22 E-value=65 Score=25.42 Aligned_cols=73 Identities=8% Similarity=0.204 Sum_probs=38.4
Q ss_pred HHHHHHHHhHHHHHHHHH--------HHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHH
Q 020751 123 DACNSVARQLEDVYSSIS--------AAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 194 (322)
Q Consensus 123 nAv~svtKqLeqVs~sLa--------aaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~ 194 (322)
..++.+..||.++..-++ .++++|..-++.+.+.|++..+-.+-++.+ -..||..=+..|..
T Consensus 10 ~V~~D~~~ql~~l~~~~~~~~~~~~~~~~~El~~~l~el~e~l~DL~~SI~i~e~~----------~~~EI~~Rk~~v~~ 79 (95)
T 2c5k_T 10 QVVKDTKEQLNRINNYITRHNTAGDDDQEEEIQDILKDVEETIVDLDRSIIVMKRD----------ENEDVSGREAQVKN 79 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS----------TTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHH
Confidence 345555555555555443 233444444444444443333332222222 55667777788888
Q ss_pred HHHHHHHhhhh
Q 020751 195 LESKLIEIEGK 205 (322)
Q Consensus 195 Le~Ki~~iE~k 205 (322)
++.+|..|..+
T Consensus 80 l~~~i~~lk~~ 90 (95)
T 2c5k_T 80 IKQQLDALKLR 90 (95)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877654
No 111
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=45.11 E-value=41 Score=24.32 Aligned_cols=14 Identities=7% Similarity=0.188 Sum_probs=5.7
Q ss_pred HHHHHHhhcchhhh
Q 020751 168 QEEVTILRGRSKLI 181 (322)
Q Consensus 168 ~~eV~~v~~dls~i 181 (322)
..+|..++.|+...
T Consensus 24 ssdV~al~~~v~~a 37 (52)
T 1jcd_A 24 SNDANAARSDAQAA 37 (52)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444443333
No 112
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=44.80 E-value=48 Score=25.62 Aligned_cols=38 Identities=24% Similarity=0.223 Sum_probs=23.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 020751 179 KLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 216 (322)
Q Consensus 179 s~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~L 216 (322)
..||.+++.=..++..++.|+++...+-..+|.-+..|
T Consensus 47 ~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kl 84 (87)
T 1l4a_D 47 IDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKL 84 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666667777777777776666666555443
No 113
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=44.71 E-value=86 Score=23.03 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=17.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhH
Q 020751 180 LIGDEFQSVRDIVQTLESKLIEIEGKQDITTL 211 (322)
Q Consensus 180 ~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~ 211 (322)
.+|.++++=+..+..++.|.+.+..+-..++.
T Consensus 28 ~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~ 59 (64)
T 3b5n_D 28 TTGKELDSQQKRLNNIEESTDDLDINLHMNTN 59 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555444443
No 114
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=44.51 E-value=1.1e+02 Score=37.36 Aligned_cols=58 Identities=5% Similarity=0.185 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH---HHhHhhhhhhHHHHHHHHHHHHHHHHHhhcch
Q 020751 121 LSDACNSVARQLEDVYSSISAAQRQL---SSKITSVDRDVNKIVEISQATQEEVTILRGRS 178 (322)
Q Consensus 121 MsnAv~svtKqLeqVs~sLaaaKrhL---sqRId~vD~klDeq~eis~~i~~eV~~v~~dl 178 (322)
+.++++...++|+...+.|++++..| ..+|+.+.++.++..+=.+.+++|+...+.++
T Consensus 2012 kr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl 2072 (3245)
T 3vkg_A 2012 LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKV 2072 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555544433 24444454555444444444555554444443
No 115
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=43.90 E-value=1.3e+02 Score=24.65 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=51.1
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHH----HHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 020751 144 RQLSSKITSVDRDVNKIVEISQATQE----EVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 216 (322)
Q Consensus 144 rhLsqRId~vD~klDeq~eis~~i~~----eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~L 216 (322)
+.|..+..++.-.+|+.+.=-++-+. .++.++.++......-+.++.-++.||-+=|.+|-..-.|..-+-.+
T Consensus 6 rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~ 82 (111)
T 2v66_B 6 RDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDF 82 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHH
Confidence 55666666666655555544444443 36677777888888888999999999999998888777776655443
No 116
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=43.90 E-value=90 Score=38.21 Aligned_cols=39 Identities=10% Similarity=0.210 Sum_probs=17.5
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHH
Q 020751 149 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQS 187 (322)
Q Consensus 149 RId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~ 187 (322)
+++.+..++++.++--+..++++.++.+.+.....+.+.
T Consensus 2015 ~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~ 2053 (3245)
T 3vkg_A 2015 EVEQLENAANELKLKQDEIVATITALEKSIATYKEEYAT 2053 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444433
No 117
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=43.66 E-value=1.2e+02 Score=25.37 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHH
Q 020751 154 DRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIE 201 (322)
Q Consensus 154 D~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~ 201 (322)
+..+.+.+.=....+.+..++...++....+++.++.-+..||.++..
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~ 135 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND 135 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333333333344444444444455555566666666666666543
No 118
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=43.39 E-value=79 Score=25.95 Aligned_cols=29 Identities=7% Similarity=0.110 Sum_probs=13.2
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 020751 143 QRQLSSKITSVDRDVNKIVEISQATQEEV 171 (322)
Q Consensus 143 KrhLsqRId~vD~klDeq~eis~~i~~eV 171 (322)
+.-|..+++.++.++++..++.+.++..+
T Consensus 83 ~~~L~~~~~~l~~~i~~L~~~~~~L~~~i 111 (142)
T 3gp4_A 83 AELLKKQRIELKNRIDVMQEALDRLDFKI 111 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444443
No 119
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=43.15 E-value=2.1e+02 Score=27.68 Aligned_cols=38 Identities=11% Similarity=0.210 Sum_probs=29.7
Q ss_pred hhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhh
Q 020751 115 FATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITS 152 (322)
Q Consensus 115 fVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~ 152 (322)
|-.||.+.+....+-|.+......|..+|+..-++-..
T Consensus 128 ~kerK~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke 165 (486)
T 3haj_A 128 FKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKE 165 (486)
T ss_dssp BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888888888888999999999999888655443
No 120
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=42.98 E-value=1.4e+02 Score=24.62 Aligned_cols=65 Identities=12% Similarity=0.121 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHH
Q 020751 131 QLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 195 (322)
Q Consensus 131 qLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~L 195 (322)
+.+++...+..+++.|+.=.+--++=-|..++-.+..+.+|.++...+.+-...+..++..+...
T Consensus 7 ~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~ 71 (112)
T 1x79_B 7 QVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQA 71 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555566555544444444455666677777888888887777777777777665544
No 121
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=42.61 E-value=28 Score=33.08 Aligned_cols=58 Identities=3% Similarity=0.096 Sum_probs=29.0
Q ss_pred HhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020751 148 SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 205 (322)
Q Consensus 148 qRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~k 205 (322)
+++++......+..+....++.++.+.++.++++..+-+.++...+.++.+|.....+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
T 3oja_A 414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANAT 471 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccH
Confidence 3333333333333333334555555555555666665666666666555555554433
No 122
>3mts_A Histone-lysine N-methyltransferase SUV39H1; histone methyltransferase, histone-lysine N-methyltransferas SUV39H1, histone H3, TRI-methylation; 2.20A {Homo sapiens}
Probab=42.36 E-value=16 Score=26.79 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=19.7
Q ss_pred eeEEeccCCcCchhhhhhhhHH
Q 020751 101 GYVWWKGWKLPDMMFATRRSLS 122 (322)
Q Consensus 101 gYmwWKGwsfSDlMfVTKRnMs 122 (322)
-++.|||+.-+|-.|-...||.
T Consensus 18 YlVKWkGy~~~~~TWEp~~nl~ 39 (64)
T 3mts_A 18 YLVKWRGYPDSESTWEPRQNLK 39 (64)
T ss_dssp EEEEETTSCGGGCEEEEGGGCC
T ss_pred EEEEEecCCCcCCcEeEHHHCC
Confidence 4689999999999999999994
No 123
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=42.04 E-value=49 Score=24.75 Aligned_cols=61 Identities=11% Similarity=0.145 Sum_probs=38.8
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHH--------HHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020751 145 QLSSKITSVDRDVNKIVEISQATQ--------EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 205 (322)
Q Consensus 145 hLsqRId~vD~klDeq~eis~~i~--------~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~k 205 (322)
++..++..++=.|++.+++...-. +-...++..+..+...++.++.+...|+.++...+..
T Consensus 7 ~~I~~lr~lGfsL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~~~~~~ 75 (99)
T 1q08_A 7 KFIRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSMQRSLQRLNDACCGT 75 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 345566667777777777765421 1234455556666777777777777777777776654
No 124
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=41.97 E-value=48 Score=25.27 Aligned_cols=19 Identities=16% Similarity=0.274 Sum_probs=11.1
Q ss_pred hhhHHHHHHHHHHhHHHHH
Q 020751 118 RRSLSDACNSVARQLEDVY 136 (322)
Q Consensus 118 KRnMsnAv~svtKqLeqVs 136 (322)
++...+|...+.+..+.+.
T Consensus 60 ~~~~~e~~~~L~~~~e~i~ 78 (107)
T 1fxk_A 60 RVAKDELTEELQEKLETLQ 78 (107)
T ss_dssp EECHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHH
Confidence 4466666666665555444
No 125
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=41.81 E-value=80 Score=24.35 Aligned_cols=55 Identities=9% Similarity=0.143 Sum_probs=25.6
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 020751 146 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 200 (322)
Q Consensus 146 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 200 (322)
.-+-++.|...+..++.+...|.+|+..=-.=|..|..+++.+..-+..--.|+.
T Consensus 28 qD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~ 82 (87)
T 1l4a_D 28 MENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKAT 82 (87)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555555544444444444455544444443333333
No 126
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=41.78 E-value=64 Score=23.35 Aligned_cols=43 Identities=12% Similarity=0.180 Sum_probs=29.7
Q ss_pred HHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhH
Q 020751 169 EEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTL 211 (322)
Q Consensus 169 ~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~ 211 (322)
+++..+..++..++.=+..+..+|..=+..|++||++-+-|..
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~ 51 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEV 51 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555666666777788888888899999987554443
No 127
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=41.28 E-value=1.6e+02 Score=27.70 Aligned_cols=35 Identities=26% Similarity=0.312 Sum_probs=18.2
Q ss_pred HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhc
Q 020751 142 AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRG 176 (322)
Q Consensus 142 aKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~ 176 (322)
.|..|...|+.|-..+.+..+-.+.+.+++..-+.
T Consensus 117 d~~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~ 151 (346)
T 2nrj_A 117 DGETLKEGITDLRGEIQQNQKYAQQLIEELTKLRD 151 (346)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665555544444444444444333
No 128
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=41.24 E-value=57 Score=32.04 Aligned_cols=63 Identities=11% Similarity=0.107 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020751 139 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 205 (322)
Q Consensus 139 LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~k 205 (322)
|-..+|.+..+++.+..+ .++++++|..- ..-.++.+.+..++..+..-+..||.++..++.+
T Consensus 36 l~~~~r~~~~~~~~l~~~---~n~~sk~i~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 98 (455)
T 2dq0_A 36 LDTEWRTKLKEINRLRHE---RNKIAVEIGKR-RKKGEPVDELLAKSREIVKRIGELENEVEELKKK 98 (455)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-HTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHh-hcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666544 45556665541 1112344444455555555555555555555443
No 129
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=41.10 E-value=1.1e+02 Score=23.79 Aligned_cols=56 Identities=14% Similarity=0.252 Sum_probs=28.7
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHH
Q 020751 143 QRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 198 (322)
Q Consensus 143 KrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 198 (322)
-|+|...++.-++.+|..+-|.++.+-.+..--+=-....++....+.....||.|
T Consensus 5 NKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~ 60 (74)
T 2q6q_A 5 NKELNFKLREKQNEIFELKKIAETLRSKLEKYVDITKKLEDQNLNLQIKISDLEKK 60 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhh
Confidence 45666666666666666666666666555433333333334444444444444443
No 130
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=40.93 E-value=87 Score=24.35 Aligned_cols=54 Identities=17% Similarity=0.249 Sum_probs=27.8
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020751 147 SSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 207 (322)
Q Consensus 147 sqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd 207 (322)
.+|++++...++......-.+..++ +....||..++-.++.+..+|..+...|-
T Consensus 5 e~rv~~LEr~~~~~~q~~~~Lq~Ql-------~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQr 58 (83)
T 2xdj_A 5 EDRVTQLERISNAHSQLLTQLQQQL-------SDNQSDIDSLRGQIQENQYQLNQVVERQK 58 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHH-------HHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4566655544443333333444444 44445555555555555566666655554
No 131
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=40.88 E-value=1e+02 Score=22.44 Aligned_cols=52 Identities=15% Similarity=0.143 Sum_probs=34.6
Q ss_pred HHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh----hhHHhHHHHHHHHH
Q 020751 168 QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK----QDITTLGVKKLCDR 219 (322)
Q Consensus 168 ~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~k----Qd~Tn~GV~~LC~f 219 (322)
.+++..+..++..++.=+..+..+|..=+..|++||++ ++.+..|...|-.+
T Consensus 9 ~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA 64 (69)
T 3b5n_B 9 HQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKA 64 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666777777788888888999877 44555565555443
No 132
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=40.42 E-value=47 Score=26.25 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=37.6
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcc
Q 020751 116 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGR 177 (322)
Q Consensus 116 VTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~d 177 (322)
-++.-+.+.|..+.-.|+.+.+||...++. =...++.=+...+.++.++..++.+
T Consensus 36 ~~~~El~~~l~el~e~l~DL~~SI~i~e~~-------~~~EI~~Rk~~v~~l~~~i~~lk~~ 90 (95)
T 2c5k_T 36 DQEEEIQDILKDVEETIVDLDRSIIVMKRD-------ENEDVSGREAQVKNIKQQLDALKLR 90 (95)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTS-------TTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378889999999999999999999997765 2233334444444455554444443
No 133
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=40.15 E-value=50 Score=23.10 Aligned_cols=30 Identities=10% Similarity=0.382 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhhHHHHHHH
Q 020751 134 DVYSSISAAQRQLSSKITSVDRDVNKIVEI 163 (322)
Q Consensus 134 qVs~sLaaaKrhLsqRId~vD~klDeq~ei 163 (322)
.+-+.+.+-...|..||..+..|||...+.
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 445567777888999999999999987664
No 134
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=39.74 E-value=4.8 Score=31.13 Aligned_cols=14 Identities=21% Similarity=0.012 Sum_probs=11.2
Q ss_pred ceEeeccceeeeec
Q 020751 4 FFSCVSGILTSVLA 17 (322)
Q Consensus 4 lILvGAG~~GSVl~ 17 (322)
+++||||++|..++
T Consensus 5 V~IIGaGpaGL~aA 18 (336)
T 3kkj_A 5 IAIIGTGIAGLSAA 18 (336)
T ss_dssp EEEECCSHHHHHHH
T ss_pred EEEECcCHHHHHHH
Confidence 68999999887554
No 135
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=39.51 E-value=1.8e+02 Score=24.80 Aligned_cols=78 Identities=14% Similarity=0.141 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH-----------------HHHhhcchhh
Q 020751 118 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE-----------------VTILRGRSKL 180 (322)
Q Consensus 118 KRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~e-----------------V~~v~~dls~ 180 (322)
++.+..-+.-+.++|+...++|..-...+.++|...|+++|....-...---. +..+-.|+++
T Consensus 13 ~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~V~~~d~~iD~l~~~I~~~~~~lla~~qp~a~dlr~i~~~l~i~~dlER 92 (235)
T 1sum_B 13 KKGVLKAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQEKAMEVLGLFSPIGKPLLTVTAGIRVAELIEN 92 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHH
Confidence 45555566666677777777776666677888888888777654432211111 1233356666
Q ss_pred hhhHHHHHHHHHHHH
Q 020751 181 IGDEFQSVRDIVQTL 195 (322)
Q Consensus 181 ig~Dv~~v~~~V~~L 195 (322)
||+-..+|-..+..+
T Consensus 93 IgD~a~~Ia~~~~~~ 107 (235)
T 1sum_B 93 IADKCHDIAKNVLEL 107 (235)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 666666555554444
No 136
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=39.07 E-value=1.2e+02 Score=23.46 Aligned_cols=23 Identities=9% Similarity=0.244 Sum_probs=10.6
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhh
Q 020751 131 QLEDVYSSISAAQRQLSSKITSV 153 (322)
Q Consensus 131 qLeqVs~sLaaaKrhLsqRId~v 153 (322)
.|.++.+.|..+|.-+..-||.+
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kv 28 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKV 28 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 137
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=38.93 E-value=2.1e+02 Score=29.10 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=43.3
Q ss_pred HHHHHHHHHHhHHHHH------------HHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Q 020751 121 LSDACNSVARQLEDVY------------SSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 188 (322)
Q Consensus 121 MsnAv~svtKqLeqVs------------~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v 188 (322)
..++-..+-+++.++. +....-++++.+|++. ++..+..++++=+..-+..-.++..+.+.+
T Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~i~~~~~~l~~~~~~~~~~~~~~~~~~~~l 667 (695)
T 2j69_A 594 VKTAKKELVKHLPQVAHEQSQVVYNAVKECFDSYEREVSKRIND------DIVSRKSELDNLVKQKQTREINRESEFNRL 667 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3444555666665544 3333444455444432 233334444444555555566677777777
Q ss_pred HHHHHHHHHHHHHhhhh
Q 020751 189 RDIVQTLESKLIEIEGK 205 (322)
Q Consensus 189 ~~~V~~Le~Ki~~iE~k 205 (322)
+.+..++-.+|..++..
T Consensus 668 ~~~~~~~~~~~~~~~~~ 684 (695)
T 2j69_A 668 KNLQEDVIAQLQKIEAA 684 (695)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHH
Confidence 77666677777777653
No 138
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=38.90 E-value=1.4e+02 Score=24.90 Aligned_cols=45 Identities=11% Similarity=0.171 Sum_probs=31.3
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH
Q 020751 118 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 162 (322)
Q Consensus 118 KRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~e 162 (322)
|+.+..-+.-+.++|+...+++..-...+.++|...|+++|+...
T Consensus 13 ~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~ 57 (216)
T 2i0m_A 13 EQSFLGLGQLVLETASKALLALASKDKEMAELIINKDHAINQGQS 57 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHH
Confidence 455566666667777777777766566777888888877776543
No 139
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=38.15 E-value=56 Score=31.65 Aligned_cols=63 Identities=11% Similarity=0.254 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020751 139 ISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK 205 (322)
Q Consensus 139 LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~k 205 (322)
+-..+|.+..+++.+..+ .++++++|..- ..-.++.+.+..++..+..-+..||.++..++.+
T Consensus 35 ~~~~~r~~~~~~~~l~~~---~n~~sk~i~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 97 (425)
T 2dq3_A 35 LDKRRREIIKRLEALRSE---RNKLSKEIGKL-KREGKDTTEIQNRVKELKEEIDRLEEELRKVEEE 97 (425)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHHTTGG-GSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHH-hhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777666666544 45556665431 1112455666667777776677777777766654
No 140
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=37.38 E-value=1.6e+02 Score=29.61 Aligned_cols=35 Identities=14% Similarity=0.349 Sum_probs=26.5
Q ss_pred cCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHH
Q 020751 110 LPDMMFATRRSLSDACNSVARQLEDVYSSISAAQR 144 (322)
Q Consensus 110 fSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKr 144 (322)
+.|+|.==.++..+-+..|-..|++|+.+=+.|+.
T Consensus 82 lad~L~kye~~V~~dl~~Le~~l~~isn~Ts~a~~ 116 (461)
T 3ghg_B 82 LQEALLQQERPIRNSVDELNNNVEAVSQTSSSSFQ 116 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccchhhHHHHHHHHHHHHHhhhHHHHH
Confidence 56788777888888888888888888766555543
No 141
>4ack_A TSSL; protein transport, microbial surface structures, virul factor; 2.15A {Francisella novicida} PDB: 4acl_A
Probab=37.05 E-value=1.1e+02 Score=27.45 Aligned_cols=65 Identities=18% Similarity=0.201 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHh
Q 020751 157 VNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARE 222 (322)
Q Consensus 157 lDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~f~~~ 222 (322)
++-..+|.+.|++-+.+-+-|-++|..-=.+|+++|..+-.+|.. ...+..--.-++.+|.|+.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ir~~I~~~re~L~~-gysE~~~~~ilFAlcAlIDE 71 (185)
T 4ack_A 7 IEIILDIIKTTREIIEDNDNDNEKISYHRNNIRKSIFFLQEELLE-KYSETVCKYIVFPLLAYVDE 71 (185)
T ss_dssp HHHHHHHHHHHHHHTC---CCTTHHHHHHHHHHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHhHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHH
Confidence 344567889999888888889999998889999999998888888 77777777889999999864
No 142
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=36.93 E-value=1.2e+02 Score=23.83 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=9.7
Q ss_pred HHHHHHHHHhhcchhhhhhHHHH
Q 020751 165 QATQEEVTILRGRSKLIGDEFQS 187 (322)
Q Consensus 165 ~~i~~eV~~v~~dls~ig~Dv~~ 187 (322)
+.|.+|++.++.+.-.+.++++.
T Consensus 27 Q~i~EELs~vr~~ni~~eskL~e 49 (81)
T 1wt6_A 27 QSLSREMEAIRTDNQNFASQLRE 49 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443333
No 143
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=36.70 E-value=1.7e+02 Score=28.63 Aligned_cols=88 Identities=9% Similarity=0.065 Sum_probs=53.1
Q ss_pred HhHHHHHHHHHHHHH-H---HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchh---hhhhHHHHHHHHHHHHHHHHHHh
Q 020751 130 RQLEDVYSSISAAQR-Q---LSSKITSVDRDVNKIVEISQATQEEVTILRGRSK---LIGDEFQSVRDIVQTLESKLIEI 202 (322)
Q Consensus 130 KqLeqVs~sLaaaKr-h---LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls---~ig~Dv~~v~~~V~~Le~Ki~~i 202 (322)
++.|.|-++++.=.. . +-.+|-.+|.+-.+...-.+.++.+-+.+...+. .-+.|.+.+..-+..|..+|..+
T Consensus 9 ~n~~~~~~~~~~R~~~~~~~~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~ 88 (455)
T 2dq0_A 9 ENPELVKNDLIKRGELEKVKWVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGEL 88 (455)
T ss_dssp HCHHHHHHHHHHHTCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHH
Confidence 345555555543211 1 2345555555555555555555555555544443 23567788888888999999999
Q ss_pred hhhhhHHhHHHHHHH
Q 020751 203 EGKQDITTLGVKKLC 217 (322)
Q Consensus 203 E~kQd~Tn~GV~~LC 217 (322)
|....-...-+..+.
T Consensus 89 ~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 89 ENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777777666663
No 144
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=36.17 E-value=2.4e+02 Score=28.37 Aligned_cols=23 Identities=13% Similarity=0.121 Sum_probs=8.9
Q ss_pred HHHHHHHhhhhhhHHhHHHHHHH
Q 020751 195 LESKLIEIEGKQDITTLGVKKLC 217 (322)
Q Consensus 195 Le~Ki~~iE~kQd~Tn~GV~~LC 217 (322)
.|..|..+..--+.-+..|..|=
T Consensus 161 ~~~~i~~l~~~~~~~~~~i~~l~ 183 (461)
T 3ghg_B 161 IPTNLRVLRSILENLRSKIQKLE 183 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 33444433333333333333333
No 145
>3f6n_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding, D binding protein; 3.10A {Cauliflower mosaic virus}
Probab=35.85 E-value=67 Score=27.27 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHhhcchhhhhhHHHH
Q 020751 157 VNKIVEISQATQEEVTILRGRSKLIGDEFQS 187 (322)
Q Consensus 157 lDeq~eis~~i~~eV~~v~~dls~ig~Dv~~ 187 (322)
|.+.+++++++.++|..+..++++|-.|..+
T Consensus 4 l~~i~~ei~e~~~~i~~l~~~Ik~il~~~~s 34 (129)
T 3f6n_A 4 LNQIQKEVSEILSDQKSMKADIKAILELLGS 34 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5566677777777777777777777777766
No 146
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=35.78 E-value=97 Score=23.51 Aligned_cols=15 Identities=7% Similarity=0.277 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHhcC
Q 020751 56 LLAEVSSVQQELSHV 70 (322)
Q Consensus 56 L~aQV~~LaqElr~L 70 (322)
+..|+..|..+++.+
T Consensus 20 l~~q~~~l~~~~~e~ 34 (107)
T 1fxk_A 20 ISVQKQTVEMQINET 34 (107)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 555666665555554
No 147
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=35.26 E-value=3.1e+02 Score=26.94 Aligned_cols=6 Identities=17% Similarity=0.329 Sum_probs=3.3
Q ss_pred CCcchh
Q 020751 21 RLSSVS 26 (322)
Q Consensus 21 kLsDv~ 26 (322)
.|.|++
T Consensus 120 ~L~DFI 125 (413)
T 4hpq_C 120 KLGDFI 125 (413)
T ss_dssp TTTTSS
T ss_pred cHHHHc
Confidence 366554
No 148
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=35.12 E-value=1.1e+02 Score=23.52 Aligned_cols=18 Identities=11% Similarity=0.311 Sum_probs=8.7
Q ss_pred hhhHHHHHHHHHHhHHHH
Q 020751 118 RRSLSDACNSVARQLEDV 135 (322)
Q Consensus 118 KRnMsnAv~svtKqLeqV 135 (322)
++...+|...+.+..+.+
T Consensus 65 ~~~~~ea~~~L~~~~e~i 82 (117)
T 2zqm_A 65 KTTKDKAVAELKEKIETL 82 (117)
T ss_dssp EECHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHH
Confidence 345555555554444433
No 149
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=34.99 E-value=1.6e+02 Score=23.00 Aligned_cols=9 Identities=11% Similarity=0.497 Sum_probs=3.3
Q ss_pred HHHHHhHHH
Q 020751 126 NSVARQLED 134 (322)
Q Consensus 126 ~svtKqLeq 134 (322)
+++=+.+|+
T Consensus 33 ~DLI~rvdE 41 (77)
T 2w83_C 33 NDLIAKVDE 41 (77)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 150
>1xwj_B Talin, metavinculin; cell adhesion/protein binding complex; 2.60A {Gallus gallus} PDB: 1rkc_B
Probab=34.99 E-value=28 Score=21.64 Aligned_cols=24 Identities=17% Similarity=0.451 Sum_probs=19.6
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHH
Q 020751 117 TRRSLSDACNSVARQLEDVYSSIS 140 (322)
Q Consensus 117 TKRnMsnAv~svtKqLeqVs~sLa 140 (322)
|+|-+++++..|+.++.+|-++|.
T Consensus 2 ~q~el~~~~r~v~ekV~~vlaaLq 25 (26)
T 1xwj_B 2 TKKELIESARKVSEKVSHVLAALQ 25 (26)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhh
Confidence 678899999999999988877663
No 151
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=34.77 E-value=1.6e+02 Score=22.77 Aligned_cols=40 Identities=13% Similarity=0.269 Sum_probs=15.8
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 020751 150 ITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 189 (322)
Q Consensus 150 Id~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 189 (322)
|+.+..++||.+.+-..--++|-+=.+.++.+.+--+.++
T Consensus 7 l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~ 46 (91)
T 3hd7_A 7 LQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQ 46 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 3344444444444443333333333333333333333333
No 152
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=34.43 E-value=1.1e+02 Score=30.49 Aligned_cols=24 Identities=8% Similarity=-0.026 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhHhhhhhhHHHHH
Q 020751 138 SISAAQRQLSSKITSVDRDVNKIV 161 (322)
Q Consensus 138 sLaaaKrhLsqRId~vD~klDeq~ 161 (322)
+|-..+|.+..+++.+..+.++..
T Consensus 41 ~ld~~~r~~~~~~~~l~~~rN~~s 64 (484)
T 3lss_A 41 EADKKWRRTQFLTEASKKLINICS 64 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667888888877776555433
No 153
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=34.11 E-value=2.6e+02 Score=26.77 Aligned_cols=59 Identities=14% Similarity=0.233 Sum_probs=36.4
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 020751 116 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL 174 (322)
Q Consensus 116 VTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v 174 (322)
+.|..+-..-..++.++.++++.|...++.+...|+.--++++...+-+..+.+++..+
T Consensus 64 ~~R~~vl~~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~ 122 (463)
T 2d4y_A 64 AARQALIGKAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRM 122 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44666666777777777777777777777777666555555444444444444454433
No 154
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=34.00 E-value=88 Score=25.72 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=11.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhh
Q 020751 180 LIGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 180 ~ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
.+...++.++.+...|+.||+..+
T Consensus 106 ~l~~~i~~L~~~~~~L~~~i~~~~ 129 (148)
T 3gpv_A 106 NVLQLIQDTEKNLKKIQQKIAKYE 129 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445555555555555444
No 155
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=33.81 E-value=1.2e+02 Score=24.39 Aligned_cols=21 Identities=14% Similarity=0.507 Sum_probs=10.1
Q ss_pred HHHHHHHHhHhhhhhhHHHHH
Q 020751 141 AAQRQLSSKITSVDRDVNKIV 161 (322)
Q Consensus 141 aaKrhLsqRId~vD~klDeq~ 161 (322)
.++++|...|++++.+++...
T Consensus 47 ~t~~eL~~EI~~L~~eI~~LE 67 (96)
T 1t3j_A 47 MTQKHLEEEIARLSKEIDQLE 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555554444433
No 156
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=33.72 E-value=1.4e+02 Score=23.61 Aligned_cols=69 Identities=14% Similarity=0.156 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhh----hhHHhHHHHHHHHHHHhhccCC
Q 020751 159 KIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGK----QDITTLGVKKLCDRARELENGR 227 (322)
Q Consensus 159 eq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~k----Qd~Tn~GV~~LC~f~~~~~~~~ 227 (322)
+.-.-.++=.+|+..+..++.+++.=+..+..+|..=+.-|++||++ ++....|...|-.+.+--++++
T Consensus 11 ~~l~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~r 83 (109)
T 3hd7_B 11 QALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKAR 83 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 157
>3e7k_A TRPM7 channel; coiled-coil, antiparallel, ION channel, assembly domain, Trp channel, membrane protein; 2.01A {Rattus norvegicus}
Probab=33.04 E-value=1.5e+02 Score=21.95 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=36.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 020751 122 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEE 170 (322)
Q Consensus 122 snAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~e 170 (322)
++=++.|.-+|+.|.+-+...|+.| ..||.++-+.++++..+-+-
T Consensus 8 ~eRve~m~~~l~Evnekv~~ik~sL----~~LD~~lg~Lqdlsal~v~t 52 (56)
T 3e7k_A 8 FERVEQMSIQIKEVGDRVNYIKRSL----QSLDSQIGHLQDLSALTVDT 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhHHHHHHHHHHHH
Confidence 4558889999999999999999854 57899998888888877553
No 158
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=32.58 E-value=45 Score=31.77 Aligned_cols=14 Identities=29% Similarity=0.662 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHh
Q 020751 189 RDIVQTLESKLIEI 202 (322)
Q Consensus 189 ~~~V~~Le~Ki~~i 202 (322)
+..+..|+.+|..+
T Consensus 39 ~~~i~~l~~~i~~l 52 (323)
T 1lwu_C 39 QQFVTRLQQQLVDI 52 (323)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 159
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=31.84 E-value=1.2e+02 Score=28.53 Aligned_cols=64 Identities=9% Similarity=0.141 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHh
Q 020751 151 TSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARE 222 (322)
Q Consensus 151 d~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~f~~~ 222 (322)
+.+++=.++.+++.++-.+++ +.....|++.+...|.+|+..|.++..=.---.+|+.+| |++.
T Consensus 360 eal~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 423 (463)
T 2xz3_A 360 AALAAAQTNAAALSHQRLTSL------IHVLEQDQQRLITAINQTHYNLLNVASVVAQNRRGLDWL--YIRL 423 (463)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHT
T ss_pred HHHHHHHHHHHHHHHhhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhHH--HHHh
No 160
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=31.71 E-value=1.7e+02 Score=22.36 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 020751 135 VYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 200 (322)
Q Consensus 135 Vs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 200 (322)
+-.+|+.+..++...++ +..........++..++.|+...-.|-+.+-++=..||--|.
T Consensus 15 Le~~l~e~E~~~~~~l~-------~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIa 73 (86)
T 1x8y_A 15 KEAKLRDLEDSLARERD-------TSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIH 73 (86)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 34445555554444333 334444445666777777777776677766666666665553
No 161
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=31.69 E-value=1.1e+02 Score=26.96 Aligned_cols=51 Identities=6% Similarity=0.216 Sum_probs=30.9
Q ss_pred chhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHH
Q 020751 112 DMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVE 162 (322)
Q Consensus 112 DlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~e 162 (322)
|.+|.+--.|.++...-...|..=...|...+..|.++.+.|...++...+
T Consensus 34 e~l~~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 34 DKILTRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp HHTGGGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666555555666666666666555555555544
No 162
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=31.56 E-value=83 Score=22.40 Aligned_cols=38 Identities=16% Similarity=0.420 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHhH----HHHHHHHHHHHHHHHHhHhhhhhhH
Q 020751 120 SLSDACNSVARQL----EDVYSSISAAQRQLSSKITSVDRDV 157 (322)
Q Consensus 120 nMsnAv~svtKqL----eqVs~sLaaaKrhLsqRId~vD~kl 157 (322)
-|..+|..+=.|| +.+|+.|-.-=..++.|||.|+..+
T Consensus 6 dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~si 47 (48)
T 3ci9_A 6 DLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNI 47 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 3555555554444 5677777777888999999887765
No 163
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0*
Probab=31.45 E-value=2.3e+02 Score=25.18 Aligned_cols=34 Identities=21% Similarity=0.305 Sum_probs=16.7
Q ss_pred hhhhhHHHH-HHHHHHHHHHHHHhhcchhhhhhHH
Q 020751 152 SVDRDVNKI-VEISQATQEEVTILRGRSKLIGDEF 185 (322)
Q Consensus 152 ~vD~klDeq-~eis~~i~~eV~~v~~dls~ig~Dv 185 (322)
.+-.+|.-- .|+...+.+++.++|..++-+..++
T Consensus 92 e~r~~l~Py~~el~~~~~~~~eelr~~L~P~~eel 126 (243)
T 2a01_A 92 EVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAEL 126 (243)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 444444433 2345555555555555555554444
No 164
>1qu7_A Methyl-accepting chemotaxis protein I; serine, four helical-bundle, signaling protein; 2.60A {Escherichia coli} SCOP: h.4.5.1
Probab=31.05 E-value=2.7e+02 Score=24.41 Aligned_cols=15 Identities=0% Similarity=0.235 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHhcC
Q 020751 56 LLAEVSSVQQELSHV 70 (322)
Q Consensus 56 L~aQV~~LaqElr~L 70 (322)
+..+++.|.+..+++
T Consensus 54 ~~~~~~~l~~~s~~I 68 (227)
T 1qu7_A 54 VVQTMRDISTSSQKI 68 (227)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 165
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=30.68 E-value=1.1e+02 Score=25.96 Aligned_cols=35 Identities=14% Similarity=0.315 Sum_probs=15.2
Q ss_pred HHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 020751 166 ATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 200 (322)
Q Consensus 166 ~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 200 (322)
++.|.|.++-.++-.+..++..++..|..|+..+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~L~~~l~ 52 (125)
T 4g2k_A 18 QIEDKIEEILSKIYHIENEIARIKKLIGNLVSRLR 52 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444443
No 166
>3edv_A Spectrin beta chain, brain 1; spectrin repeat, coiled coil, actin capping, actin-binding, alternative splicing, calmodulin-binding, cytoplasm; 1.95A {Homo sapiens}
Probab=30.36 E-value=2.3e+02 Score=24.72 Aligned_cols=89 Identities=4% Similarity=0.064 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHH-HHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHH
Q 020751 120 SLSDACNSVARQLEDVYSSISA-AQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESK 198 (322)
Q Consensus 120 nMsnAv~svtKqLeqVs~sLaa-aKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~K 198 (322)
....-|..+...-+++.+.-.. ...++..|++.|..+-+...+....-+..+.+.. ++.+|..+++.+..-+...+..
T Consensus 163 ~~~~~v~~l~~~a~~L~~~~~~~~~~~i~~~~~~l~~~W~~l~~~~~~r~~~L~~~~-~~~~F~~~~~~l~~Wl~~~~~~ 241 (323)
T 3edv_A 163 ALGTQVRQLQEDAARLQAAYAGDKADDIQKRENEVLEAWKSLLDACESRRVRLVDTG-DKFRFFSMVRDLMLWMEDVIRQ 241 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhhhhHH
Q 020751 199 LIEIEGKQDIT 209 (322)
Q Consensus 199 i~~iE~kQd~T 209 (322)
|...+...|.+
T Consensus 242 l~~~~~~~d~~ 252 (323)
T 3edv_A 242 IEAQEKPRDVS 252 (323)
T ss_dssp HHTCCCCCSHH
T ss_pred HhCCcCCCCHH
No 167
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=30.35 E-value=2.1e+02 Score=22.95 Aligned_cols=45 Identities=29% Similarity=0.483 Sum_probs=36.3
Q ss_pred hhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHh
Q 020751 174 LRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLCDRARE 222 (322)
Q Consensus 174 v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC~f~~~ 222 (322)
.+.-+..||+|+=.|+.....||--+. .|.-++.-..-||.+.++
T Consensus 35 lk~~L~Kig~Ei~~l~eLLn~~E~eV~----~Qe~~~~sLKEL~~s~e~ 79 (91)
T 4aj5_A 35 LKTVLNKIGDEIIVINELLNKLELEIQ----YQEQTNNSLKELCESLEE 79 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 334578899999999988888877664 588899999999998864
No 168
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=30.26 E-value=1.5e+02 Score=21.14 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhhh
Q 020751 132 LEDVYSSISAAQRQLSSKITSV 153 (322)
Q Consensus 132 LeqVs~sLaaaKrhLsqRId~v 153 (322)
|.+|...|..+|.-+..-|+.|
T Consensus 4 l~~vq~~l~evk~iM~~NI~~v 25 (61)
T 3b5n_A 4 TAELQAEIDDTVGIMRDNINKV 25 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 169
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=30.20 E-value=2.4e+02 Score=23.51 Aligned_cols=78 Identities=9% Similarity=0.181 Sum_probs=44.1
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHH-----HHH------HH------HHHhhcchhh
Q 020751 118 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQ-----ATQ------EE------VTILRGRSKL 180 (322)
Q Consensus 118 KRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~-----~i~------~e------V~~v~~dls~ 180 (322)
++.+..-+..+.+.|+.+.+++..-...+..+|...|+++|+...-.. .+. .+ +..+-.++++
T Consensus 17 ~~~l~~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~i~~~~~~~l~~~~~~~~d~~~~~~~l~i~~~lER 96 (227)
T 1t72_A 17 KEQVIKMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCIRMIALYQPEAGDLRMIMGIYKIVSDLER 96 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 445555555666667777777765556677777777777776532211 111 01 1223456666
Q ss_pred hhhHHHHHHHHHHHH
Q 020751 181 IGDEFQSVRDIVQTL 195 (322)
Q Consensus 181 ig~Dv~~v~~~V~~L 195 (322)
||+-..+|-..+..+
T Consensus 97 IgD~a~nIa~~~~~~ 111 (227)
T 1t72_A 97 MGDEAENIAERAILL 111 (227)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 666666665555444
No 170
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=30.00 E-value=2.9e+02 Score=25.24 Aligned_cols=38 Identities=18% Similarity=0.290 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHhHHHHHHHHH-HHHHHHHHhHhhhhhhH
Q 020751 120 SLSDACNSVARQLEDVYSSIS-AAQRQLSSKITSVDRDV 157 (322)
Q Consensus 120 nMsnAv~svtKqLeqVs~sLa-aaKrhLsqRId~vD~kl 157 (322)
+..+.+..+.+.++++.+.+- ..+++...||-.+.+++
T Consensus 168 ~~~~~l~~l~~~i~~lE~~l~~~~~~~~l~~l~~lrr~l 206 (339)
T 4ev6_A 168 SYSRILMNLEDELEELEDKLLAGYDREVMEKILGLRKTL 206 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 444555566666666555432 12333444444444443
No 171
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=29.51 E-value=55 Score=28.61 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhH
Q 020751 187 SVRDIVQTLESKLIEIEGKQDI 208 (322)
Q Consensus 187 ~v~~~V~~Le~Ki~~iE~kQd~ 208 (322)
+.+..+..|.+-+.+...+++-
T Consensus 104 k~~a~~~q~~~d~~~~~~~~~k 125 (158)
T 3tul_A 104 QAEAAVEQAGKEATEAKEALDK 125 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555444443
No 172
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=29.33 E-value=2.2e+02 Score=23.09 Aligned_cols=30 Identities=17% Similarity=0.270 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhHHH---HHHHHHHHHHHHHHhH
Q 020751 121 LSDACNSVARQLED---VYSSISAAQRQLSSKI 150 (322)
Q Consensus 121 MsnAv~svtKqLeq---Vs~sLaaaKrhLsqRI 150 (322)
|+|-.+++-..|+. -.+.|...|++|..-+
T Consensus 2 lan~La~le~sLe~EK~S~eeL~kQk~eL~~~l 34 (101)
T 1d7m_A 2 MANRLAGLENSLESEKVSREQLIKQKDQLNSLL 34 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHhhhhhccHHHHHHHHHHHHHHH
Confidence 44555555544443 2344555555554433
No 173
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=29.31 E-value=2e+02 Score=22.68 Aligned_cols=69 Identities=10% Similarity=0.176 Sum_probs=37.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 020751 125 CNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 200 (322)
Q Consensus 125 v~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 200 (322)
.+++-++...+-..|+.++.++...++.....+ .....++..++.|+..--.|-+.+-.+-..||-.|.
T Consensus 14 ~~~Lq~~~~~LE~~l~e~E~~~~~e~~~~q~~i-------~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~Le~EIa 82 (95)
T 3mov_A 14 YFQGQKESRACLERIQELEDLLAKEKDNSRRML-------TDKEREMAEIRDQMQQQLNDYEQLLDVKLALDMEIS 82 (95)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555566666665555554444433 445555666666666666666666666666665543
No 174
>1fzc_A Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: h.1.8.1 PDB: 1fzb_A* 1fza_A* 1fze_A* 1fzf_A* 1fzg_A* 1n86_A* 2h43_A* 2hlo_A* 2hod_A* 2hpc_A* 2q9i_A* 2xnx_A 2xny_A 2z4e_A* 3e1i_A* 1n8e_A 2oyh_A* 1ltj_A* 1lt9_A* 1re4_A* ...
Probab=29.17 E-value=50 Score=26.40 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=14.7
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 020751 144 RQLSSKITSVDRDVNKIVEISQATQEEV 171 (322)
Q Consensus 144 rhLsqRId~vD~klDeq~eis~~i~~eV 171 (322)
..|-.||+.+..|+++|.......++.|
T Consensus 3 edLrrrI~~LkrkV~~q~~~i~~Lq~nv 30 (87)
T 1fzc_A 3 EDLRSRIEVLKRKVIEKVQHIQLLQKNV 30 (87)
T ss_dssp ------CTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899988888877766555444444
No 175
>2bsg_A Fibritin; viral protein, attachment protein, bacteriophage assembly, chaperone, coiled coil, structural protein; 15.00A {Bacteriophage T4}
Probab=28.98 E-value=56 Score=33.14 Aligned_cols=85 Identities=14% Similarity=0.146 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHH---hHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHH
Q 020751 119 RSLSDACNSVARQLEDVYSSISAAQRQLSS---KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 195 (322)
Q Consensus 119 RnMsnAv~svtKqLeqVs~sLaaaKrhLsq---RId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~L 195 (322)
-+|..|--.|-|..+.+.+-+...+..+.. +|...++-|+..-... .-++|..-+.|++.+..++...+..+..+
T Consensus 43 G~lNra~v~VQ~NV~~Ld~N~~~~~~~~ne~~~~Vn~I~~~L~~~GD~~--vi~qI~~n~~dI~~Lk~~~~~~~~~l~~~ 120 (487)
T 2bsg_A 43 GSMNRPTVSVLRNVEVLDKNIGILKTSLETANSDIKTIQGILDVSGDIE--ALAQIGINKKDISDLKTLTSEHTEILNGT 120 (487)
T ss_pred cccccchhhhhhhHHHHhhhHHHHHhhHHHHHHHHHHHHHHHhccccHH--HHHHHHhhHHHHHHHhcchhhhhhhhhhh
Confidence 456777777888888888888888777766 4444444444322222 33445555555555555566666666666
Q ss_pred HHHHHHhhhh
Q 020751 196 ESKLIEIEGK 205 (322)
Q Consensus 196 e~Ki~~iE~k 205 (322)
..++++|+..
T Consensus 121 ~~~~~ei~~d 130 (487)
T 2bsg_A 121 NNTVDSILAD 130 (487)
T ss_pred ccchHHHHhh
Confidence 6666666544
No 176
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=28.81 E-value=44 Score=27.16 Aligned_cols=38 Identities=21% Similarity=0.204 Sum_probs=33.9
Q ss_pred HHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020751 167 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 204 (322)
Q Consensus 167 i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~ 204 (322)
+.++++.++..++....+-+.+.+-+..||.+|....-
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l 47 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLERRAL 47 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66799999999999999999999999999999987443
No 177
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=28.20 E-value=3.2e+02 Score=24.27 Aligned_cols=94 Identities=14% Similarity=0.179 Sum_probs=47.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhh-----------hhhHHHHHHHHHHHHH
Q 020751 128 VARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKL-----------IGDEFQSVRDIVQTLE 196 (322)
Q Consensus 128 vtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~-----------ig~Dv~~v~~~V~~Le 196 (322)
+-.-|+.+.++=..-..+|-.-|+....+.-+...-....+.|+...+.++.. +..++..++.....|-
T Consensus 29 le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~ 108 (189)
T 2v71_A 29 ARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLH 108 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444344444455555555555555555555555554444443333 3444555555556666
Q ss_pred HHHHHhhhhhhHHhHHHHHHHHHHH
Q 020751 197 SKLIEIEGKQDITTLGVKKLCDRAR 221 (322)
Q Consensus 197 ~Ki~~iE~kQd~Tn~GV~~LC~f~~ 221 (322)
.+|-.+|-..|-=..-...+|.-++
T Consensus 109 ~~ireLEq~NDdlEr~~R~~~~Sle 133 (189)
T 2v71_A 109 KYVRELEQANDDLERAKRATIMSLE 133 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHhhHH
Confidence 6666666655555555555554443
No 178
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=28.17 E-value=1.1e+02 Score=24.39 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=13.5
Q ss_pred HHHHHHhHhhhhhhHHHHHHHHHHH
Q 020751 143 QRQLSSKITSVDRDVNKIVEISQAT 167 (322)
Q Consensus 143 KrhLsqRId~vD~klDeq~eis~~i 167 (322)
|+.|.++|+.+...+++-..-.+.+
T Consensus 17 kkkL~~Ki~el~~ei~ke~~~regl 41 (98)
T 2ke4_A 17 RKRLQQQLEERSRELQKEVDQREAL 41 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666665555444443333
No 179
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=27.84 E-value=3.6e+02 Score=24.77 Aligned_cols=84 Identities=20% Similarity=0.266 Sum_probs=57.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHH------HHHHH
Q 020751 122 SDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD------IVQTL 195 (322)
Q Consensus 122 snAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~------~V~~L 195 (322)
.+++.+|+-.|-.+...+..+..++.++++..-..|-..- .+.+.|...|..=..+.++|..++. -+..|
T Consensus 61 dddl~DIsdklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR----~~E~svqp~R~~R~~l~~~I~kLk~k~P~s~kl~~L 136 (234)
T 3plt_A 61 DDDVSDVTDKLGVLIYELGELQDQFIDKYDQYRVTLKSIR----NIEASVQPSRDRKEKITDEIAHLKYKDPQSTKIPVL 136 (234)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHhccCCCCchHHHH
Confidence 5788888888888888888888888888877666554433 3334455556655666666666663 46678
Q ss_pred HHHHHHhhhhhhHH
Q 020751 196 ESKLIEIEGKQDIT 209 (322)
Q Consensus 196 e~Ki~~iE~kQd~T 209 (322)
|..|.+.|...-.+
T Consensus 137 eqELvraEae~lva 150 (234)
T 3plt_A 137 EQELVRAEAESLVA 150 (234)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHH
Confidence 88777666554444
No 180
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=27.67 E-value=2.1e+02 Score=22.00 Aligned_cols=67 Identities=9% Similarity=0.085 Sum_probs=37.9
Q ss_pred HHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhh
Q 020751 140 SAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQ 206 (322)
Q Consensus 140 aaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQ 206 (322)
..-|-.|..-|+|+-.-+++.+.=-+.=...=+.+-.|+..+..|++...-.-..||.||+++..--
T Consensus 13 ~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eEl 79 (86)
T 3swk_A 13 TNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEI 79 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555544444433222211112233445556666678888888889999999886543
No 181
>1mqm_B Hemagglutinin HA2 chain; influenza virus, viral protein; HET: NAG BMA MAN SIA GAL; 2.60A {Influenza a virus} SCOP: h.3.1.1 PDB: 1mql_B* 1mqn_B* 2l4g_A
Probab=27.67 E-value=16 Score=33.38 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=40.7
Q ss_pred hhhhhHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 020751 116 ATRRSLSDACNSVARQLEDVYS-------SISAAQRQLSSKITSVDRDVNKIVEISQATQEE 170 (322)
Q Consensus 116 VTKRnMsnAv~svtKqLeqVs~-------sLaaaKrhLsqRId~vD~klDeq~eis~~i~~e 170 (322)
+-+++-..|.+.+++.|..+.+ ++...=.+|-+||++|++|+|+...=.-.-..|
T Consensus 36 AD~kSTQ~AId~It~KlN~~iekmN~qfe~v~~ef~~~e~ri~~l~~~vdD~~~DvwsyNaE 97 (221)
T 1mqm_B 36 ADLKSTQAAIDQINRKLNRVIEKTNEKFHQIEKEFSEVEGRIQDLEKYVEDTKIDLWSYNAE 97 (221)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHSCCCEECSCCCCCCSSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHH
Confidence 5678889999999999988853 455555678899999999999875433333333
No 182
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=27.65 E-value=2.9e+02 Score=27.68 Aligned_cols=88 Identities=10% Similarity=0.047 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHH--HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchh---hhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020751 131 QLEDVYSSISAAQR--QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSK---LIGDEFQSVRDIVQTLESKLIEIEGK 205 (322)
Q Consensus 131 qLeqVs~sLaaaKr--hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls---~ig~Dv~~v~~~V~~Le~Ki~~iE~k 205 (322)
..|.|-++++.=.. .+-.+|-.+|.+--+...-.++++.+-+.+...+. .-+.|.+.+..-+..|..+|..+|..
T Consensus 14 n~~~v~~~~~~R~~~~~~~~~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~ 93 (485)
T 3qne_A 14 DPEIIKASQKKRGDSVELVDEIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEK 93 (485)
T ss_dssp CHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555542111 13456666666666655556666666555555443 34567888888899999999999988
Q ss_pred hhHHhHHHHHHHH
Q 020751 206 QDITTLGVKKLCD 218 (322)
Q Consensus 206 Qd~Tn~GV~~LC~ 218 (322)
..-...-+..++.
T Consensus 94 ~~~~~~~~~~~l~ 106 (485)
T 3qne_A 94 EAEADKNLRSKIN 106 (485)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 7777766666543
No 183
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=27.44 E-value=2.1e+02 Score=26.33 Aligned_cols=48 Identities=15% Similarity=0.176 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020751 156 DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 156 klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
++-...+-....+-.++.+..|+....-++..+...|.+.|.+|+.|+
T Consensus 99 RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~ 146 (242)
T 3c9i_A 99 RITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQ 146 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhh
Confidence 333333444444444555555555555556666666666666666654
No 184
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=27.40 E-value=2.9e+02 Score=26.66 Aligned_cols=22 Identities=9% Similarity=0.353 Sum_probs=12.8
Q ss_pred hHHHHHHHHHHHHHHHHHhHhh
Q 020751 131 QLEDVYSSISAAQRQLSSKITS 152 (322)
Q Consensus 131 qLeqVs~sLaaaKrhLsqRId~ 152 (322)
.+.+-.+.|.+-+..+++.|..
T Consensus 39 ~~~~~~~~l~~~~n~~sk~i~~ 60 (421)
T 1ses_A 39 ELKKRLQEVQTERNQVAKRVPK 60 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455566666666666654
No 185
>2rft_B Influenza B hemagglutinin (HA); viral protein, receptor specificity, envelope Pro fusion protein, membrane, transmembrane, VIR glycoprotein; HET: NAG SIA BGC GAL NDG; 2.80A {Influenza b virus} SCOP: j.79.1.1 PDB: 2rfu_B* 3bt6_B*
Probab=27.32 E-value=26 Score=30.99 Aligned_cols=56 Identities=23% Similarity=0.344 Sum_probs=40.4
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHH
Q 020751 116 ATRRSLSDACNSVARQLEDVYSS-------ISAAQRQLSSKITSVDRDVNKIVEISQATQEEV 171 (322)
Q Consensus 116 VTKRnMsnAv~svtKqLeqVs~s-------LaaaKrhLsqRId~vD~klDeq~eis~~i~~eV 171 (322)
+-+++-.+|...++..|..+.+. +...=.++-+||.+|++++|+...=.-.-..|+
T Consensus 36 ad~ksTQ~aId~It~K~N~~iek~n~qfe~i~~ef~~~e~rI~~l~~~vdD~~~DvwsynaEL 98 (176)
T 2rft_B 36 ADLKSTQEAINKITKNLNSLSELEVKNLQRLSGAMDELHNEILELDEKVDDLRADTISSQIEL 98 (176)
T ss_dssp CCTTHHHHHHHHHHHHHHHHTTCCCCCCCCCSSCCTTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHH
Confidence 56788899999999999888542 333344888999999999998764333333443
No 186
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=27.20 E-value=2e+02 Score=21.73 Aligned_cols=42 Identities=12% Similarity=0.179 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHH
Q 020751 159 KIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLI 200 (322)
Q Consensus 159 eq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~ 200 (322)
+..........++..++.|+...-.|-+.+-++=..||--|.
T Consensus 30 ~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIa 71 (84)
T 1gk4_A 30 NYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIA 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 333444445556666666666666666666666566665543
No 187
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=27.05 E-value=2.7e+02 Score=23.12 Aligned_cols=44 Identities=9% Similarity=0.168 Sum_probs=32.1
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 020751 118 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 161 (322)
Q Consensus 118 KRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~ 161 (322)
++.+..-+.-+.+.|+...+++..--..+..+|...|+++|+..
T Consensus 13 ~~~l~~M~~~v~~ml~~a~~al~~~d~~~a~~v~~~d~~iD~l~ 56 (217)
T 1xwm_A 13 HNKLIEMGRLTEVALQQAIEAFQTQNANLAMAVIDGDGSIDALE 56 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHH
Confidence 44555566666777777777877766778888888888887664
No 188
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=26.72 E-value=1.9e+02 Score=21.13 Aligned_cols=37 Identities=16% Similarity=0.103 Sum_probs=27.4
Q ss_pred HHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020751 167 TQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 167 i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
++..|..-..++.....++..++..+..|+..|+.+.
T Consensus 40 l~~~~~~~~~~l~~~k~Ei~elrr~iq~L~~el~slk 76 (77)
T 3trt_A 40 LSEAANRNNDALRQAKQESTEYRRQVQSLTMEVDALK 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444555555666777889999999999999988764
No 189
>2wrg_I Hemagglutinin HA2 chain; viral protein, envelope protein, glycoprotein, lipoprotein; HET: NAG SIA GAL; 3.00A {Influenza a virus} PDB: 2wrh_I*
Probab=26.68 E-value=43 Score=30.64 Aligned_cols=47 Identities=15% Similarity=0.318 Sum_probs=37.4
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHH-------HHHHHHHHHHhHhhhhhhHHHHHH
Q 020751 116 ATRRSLSDACNSVARQLEDVYSS-------ISAAQRQLSSKITSVDRDVNKIVE 162 (322)
Q Consensus 116 VTKRnMsnAv~svtKqLeqVs~s-------LaaaKrhLsqRId~vD~klDeq~e 162 (322)
+-+++-..|...+++.|..|.+. +...=.++-+||++|++++|+...
T Consensus 36 AD~kSTQ~AId~It~KlN~liek~N~qf~~i~~EF~e~e~rI~~l~~~vdD~~~ 89 (222)
T 2wrg_I 36 ADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFL 89 (222)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTSCCCCSCCCCCCCTTCHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 55688899999999999888653 444455788999999999998763
No 190
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=26.63 E-value=1.2e+02 Score=21.66 Aligned_cols=10 Identities=10% Similarity=0.518 Sum_probs=4.3
Q ss_pred HHHhHhhhhh
Q 020751 146 LSSKITSVDR 155 (322)
Q Consensus 146 LsqRId~vD~ 155 (322)
+++|++.++.
T Consensus 35 vt~rle~lEn 44 (47)
T 1aq5_A 35 VAKRIEALEN 44 (47)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3444444433
No 191
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=26.51 E-value=5.2e+02 Score=28.16 Aligned_cols=82 Identities=7% Similarity=0.115 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhHHHHHH------HHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh----hcchhhhhhHHHHHHH
Q 020751 121 LSDACNSVARQLEDVYS------SISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTIL----RGRSKLIGDEFQSVRD 190 (322)
Q Consensus 121 MsnAv~svtKqLeqVs~------sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v----~~dls~ig~Dv~~v~~ 190 (322)
+.+-|+.+-+.++.+.. .+..--+.|...|+.++.++++...-.+.++++.... ++.++++..+...+++
T Consensus 958 ~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~q 1037 (1080)
T 2dfs_A 958 YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKT 1037 (1080)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555444443332 2223346777888888887777666555555554444 4444555555555555
Q ss_pred HHHHHHHHHHHh
Q 020751 191 IVQTLESKLIEI 202 (322)
Q Consensus 191 ~V~~Le~Ki~~i 202 (322)
-+..||..+...
T Consensus 1038 q~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 1038 EKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
No 192
>2h1e_A Chromo domain protein 1; CHD1, tandem chromodomains, three-stranded ANT B-sheet, hydrolase; 2.20A {Saccharomyces cerevisiae} PDB: 2dy7_A 2dy8_A
Probab=26.39 E-value=47 Score=28.75 Aligned_cols=27 Identities=11% Similarity=0.089 Sum_probs=22.5
Q ss_pred eeeEEeccCCcCchhhhhhhhHHHHHHH
Q 020751 100 YGYVWWKGWKLPDMMFATRRSLSDACNS 127 (322)
Q Consensus 100 YgYmwWKGwsfSDlMfVTKRnMsnAv~s 127 (322)
--|+.|||+|--+--|+|-.+|.+ |..
T Consensus 48 EYlVKWKg~Sy~HnTWe~ee~L~~-~~g 74 (177)
T 2h1e_A 48 EFLIKWTDESHLHNTWETYESIGQ-VRG 74 (177)
T ss_dssp EEEEEETTSCGGGCEEECHHHHCS-CTT
T ss_pred EEEEEECCCccccCeecCHHHHhh-chH
Confidence 447889999999999999999975 443
No 193
>1avo_B 11S regulator; proteasome activator, cell adhesion, interferon induction; 2.80A {Homo sapiens} SCOP: a.24.8.1
Probab=26.28 E-value=2.8e+02 Score=23.30 Aligned_cols=83 Identities=12% Similarity=0.083 Sum_probs=66.1
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHH
Q 020751 118 RRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLES 197 (322)
Q Consensus 118 KRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~ 197 (322)
...+-...+.+-..+.++.+.+..-|.-++-+|-+..+==+==.++++.+-+++++++.....+.+.+..-+..-..+..
T Consensus 5 N~~I~~l~~~vk~ei~~l~e~~~~vk~WI~l~IPkiEDGNNFGV~VQeevl~~l~~v~~~~~~~~~~i~~Y~~~Ra~~v~ 84 (140)
T 1avo_B 5 NEKIVVLLQRLKPEIKDVIEQLNLVTTWLQLQIPRIEDGNNFGVAVQEKVFELMTSLHTKLEGFHTQISKYFSERGDAVT 84 (140)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667778888888888888888888888877766666668899999999999999999988888888877777777
Q ss_pred HHH
Q 020751 198 KLI 200 (322)
Q Consensus 198 Ki~ 200 (322)
|+.
T Consensus 85 K~~ 87 (140)
T 1avo_B 85 KAA 87 (140)
T ss_dssp HHH
T ss_pred HHh
Confidence 754
No 194
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.25 E-value=99 Score=30.02 Aligned_cols=32 Identities=13% Similarity=0.117 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHH
Q 020751 139 ISAAQRQLSSKITSVDRDVNKIVEISQATQEE 170 (322)
Q Consensus 139 LaaaKrhLsqRId~vD~klDeq~eis~~i~~e 170 (322)
|...-++|.+|++.++.+..++.+..+..+++
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~ 39 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQ 39 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444455555555544444444444433
No 195
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=26.13 E-value=2.7e+02 Score=28.16 Aligned_cols=68 Identities=13% Similarity=0.249 Sum_probs=53.3
Q ss_pred Cchhhhhhh--hHHHHHHHHHHhHHHHHHHHHHHHH-----------------------------HHHHhHhhhhhhHHH
Q 020751 111 PDMMFATRR--SLSDACNSVARQLEDVYSSISAAQR-----------------------------QLSSKITSVDRDVNK 159 (322)
Q Consensus 111 SDlMfVTKR--nMsnAv~svtKqLeqVs~sLaaaKr-----------------------------hLsqRId~vD~klDe 159 (322)
.|-+|+.-| ++.++...+.+.+++..+.....++ ++.++-..++..+.=
T Consensus 329 ~D~~w~~~r~~~f~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~i 408 (671)
T 1mqs_A 329 NDFFWMENSHLPFPEAAENVEAALNTYKEEAAEITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELTAKKNTIDTHMNI 408 (671)
T ss_dssp SCTTHHHHSSSBHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCCSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhcccCccCcccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 799999887 7899999999999988887654332 566777778888888
Q ss_pred HHHHHHHHHH----HHHHhhcch
Q 020751 160 IVEISQATQE----EVTILRGRS 178 (322)
Q Consensus 160 q~eis~~i~~----eV~~v~~dl 178 (322)
+.+|.+.+++ ++.++..++
T Consensus 409 a~~l~~~i~~~~l~~~~e~EQ~l 431 (671)
T 1mqs_A 409 FAALLSQLESKSLDTFFEVEQDP 431 (671)
T ss_dssp HHHHHHHHHTTTCHHHHHHTSCC
T ss_pred HHHHHHHHhHhhHHHHHHHHHHH
Confidence 8888888875 577777776
No 196
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=26.10 E-value=2.6e+02 Score=22.55 Aligned_cols=73 Identities=7% Similarity=0.008 Sum_probs=57.5
Q ss_pred HhHHHHHHHHHHHHHHHHHhHhhh--hhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020751 130 RQLEDVYSSISAAQRQLSSKITSV--DRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 204 (322)
Q Consensus 130 KqLeqVs~sLaaaKrhLsqRId~v--D~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~ 204 (322)
...+..+.....-+..+..+|+.. -+.+|++.+-+..+++.|++.-.-|- -+|+..-+..|..|..++++...
T Consensus 31 E~~~~F~~~F~~~~~~Ie~~l~~~~~~~~ld~i~~~I~~Lqk~v~das~fLp--~YD~R~~q~~i~~L~~~l~e~r~ 105 (111)
T 2l3l_A 31 ENSHFFVATFARERAAVEELLERAESVERLEEAASRLQGLQKLINDSVFFLA--AYDLRQGQEALARLQAALAERRR 105 (111)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHSTTTSC--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHHHHHHHhhhcc--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777788888888766 55688888888888999988877554 47899999999999999887643
No 197
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=26.07 E-value=1.8e+02 Score=23.84 Aligned_cols=39 Identities=3% Similarity=0.143 Sum_probs=24.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHH
Q 020751 179 KLIGDEFQSVRDIVQTLESKLIEIEGKQDITTLGVKKLC 217 (322)
Q Consensus 179 s~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~LC 217 (322)
+.+...++.++.+...|+.++..++......+.=...|.
T Consensus 90 ~~L~~~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~Li 128 (146)
T 3hh0_A 90 EVLLAEQERIAKVLSHMDEMTKKFQKEERVNVALFSSFL 128 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHH
Confidence 344455666677777777777777766665555444444
No 198
>3l39_A Putative PHOU-like phosphate regulatory protein; BT4638, structural genomics, joint center for structural genomics, JCSG; 1.93A {Bacteroides thetaiotaomicron}
Probab=25.75 E-value=3.3e+02 Score=23.62 Aligned_cols=77 Identities=8% Similarity=0.176 Sum_probs=42.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHH-HhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH---HHHHHHHHHHHHh
Q 020751 127 SVARQLEDVYSSISAAQRQLS-SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR---DIVQTLESKLIEI 202 (322)
Q Consensus 127 svtKqLeqVs~sLaaaKrhLs-qRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~---~~V~~Le~Ki~~i 202 (322)
.+...||.|-+.+..+=+.+. -+++.++..+.++.++....-+++.++=..+.+++.|.+.+. .-|..+|.+.|.+
T Consensus 98 ~L~~~lDdI~D~ie~~a~~l~l~~~~~~~~~~~~l~~~i~~~~~~l~~ai~~L~~~~~~~~~i~~~~~eI~~lE~eaD~l 177 (227)
T 3l39_A 98 DLASCMDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDELETFRKNPKPLRDYCTQLHDIENQADDV 177 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHHHHTTTTTTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666665555544443 344555666666666555555555555555555543544444 4477778777766
Q ss_pred h
Q 020751 203 E 203 (322)
Q Consensus 203 E 203 (322)
.
T Consensus 178 ~ 178 (227)
T 3l39_A 178 Y 178 (227)
T ss_dssp H
T ss_pred H
Confidence 5
No 199
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=25.32 E-value=45 Score=28.96 Aligned_cols=29 Identities=14% Similarity=0.298 Sum_probs=14.0
Q ss_pred HHHhhcchhhhhhHHHHHHHHHHHHHHHH
Q 020751 171 VTILRGRSKLIGDEFQSVRDIVQTLESKL 199 (322)
Q Consensus 171 V~~v~~dls~ig~Dv~~v~~~V~~Le~Ki 199 (322)
++++.-...++...++.++..+..|-.-+
T Consensus 111 I~~Le~s~~~L~k~~~eLq~~IdnlN~TL 139 (149)
T 1wyy_A 111 ISGINASVVNIQKEIDRLNEVAKNLNESL 139 (149)
T ss_dssp CTTCCCCCCCCHHHHHHHHHHHHHGGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33344444444555555555555554433
No 200
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=25.11 E-value=2.6e+02 Score=24.12 Aligned_cols=63 Identities=8% Similarity=0.191 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHhHHHHHHHH--------HHHHHH---HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhh
Q 020751 120 SLSDACNSVARQLEDVYSSI--------SAAQRQ---LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIG 182 (322)
Q Consensus 120 nMsnAv~svtKqLeqVs~sL--------aaaKrh---LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig 182 (322)
.....++.+.+-||.++.+| +.||+. +..|.+.|...+.+-..+....+++|.+++.=+.++.
T Consensus 76 ~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~~m~ 149 (154)
T 2ocy_A 76 KAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMHSLD 149 (154)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444555555555555543 333332 4455556666666666666666666655554444433
No 201
>3h6p_C ESAT-6-like protein ESXR; four-helix bundle, structural genomics, PSI-2, protein struc initiative, TB structural genomics consortium; 1.91A {Mycobacterium tuberculosis} PDB: 2kg7_B 3q4h_B
Probab=25.09 E-value=65 Score=23.98 Aligned_cols=32 Identities=6% Similarity=-0.060 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhhcchhhhhhHHHHHHHHHHH
Q 020751 163 ISQATQEEVTILRGRSKLIGDEFQSVRDIVQT 194 (322)
Q Consensus 163 is~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~ 194 (322)
...+-.....+++.-|..|+.-++..+.....
T Consensus 54 ~~~~W~~~~~~l~~~L~~i~~~l~~a~~~y~~ 85 (96)
T 3h6p_C 54 WQTQWNQALEDLVRAYQSMSGTHESNTMAMLA 85 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444333333
No 202
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=24.90 E-value=1.9e+02 Score=29.63 Aligned_cols=62 Identities=15% Similarity=0.238 Sum_probs=34.7
Q ss_pred HHHhhhheeeEEeccCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHH
Q 020751 93 VVIVAVGYGYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEIS 164 (322)
Q Consensus 93 a~iGavGYgYmwWKGwsfSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis 164 (322)
|.+-++|- |=..+|=.=-+.+.|.+-+.. ||.....-..--||=..=++..++.|++...+.
T Consensus 73 VilNV~G~------~~~~pDPLsPgE~~~~~Kl~e----LE~e~k~d~~~~khn~~I~~k~g~~l~~v~~~~ 134 (526)
T 3iyk_A 73 VLLNVLGS------GEEIPDPLSPGERGIQAKLKE----LEDEQRNELVRLKYNDKIKEKFGKELEEVYNFM 134 (526)
T ss_pred HHHHhccc------CCCCCCCCCHhHHHHHHHHHH----HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455553 567888777777777766643 444444444444454455555555555555443
No 203
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=24.72 E-value=2.3e+02 Score=21.47 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=17.7
Q ss_pred HHhHhhhhhhHHHHHHHHHHHHHHHHH
Q 020751 147 SSKITSVDRDVNKIVEISQATQEEVTI 173 (322)
Q Consensus 147 sqRId~vD~klDeq~eis~~i~~eV~~ 173 (322)
...++.+..++++..+-...+..++..
T Consensus 21 qrEle~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 21 QRELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345667777777766666667666654
No 204
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=24.52 E-value=2.7e+02 Score=23.06 Aligned_cols=101 Identities=14% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHH-HHHHHHHHHHHHHHHH
Q 020751 123 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEF-QSVRDIVQTLESKLIE 201 (322)
Q Consensus 123 nAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv-~~v~~~V~~Le~Ki~~ 201 (322)
.|..+++.-+..|..+|..+.+-++-==..+.+=.|=..++.+.+.+=+....-....+..++ +-+++.--.|=.+|+.
T Consensus 1 ~a~~nit~a~~~~n~Ai~~~~~gf~tv~~Al~kiQdVVN~q~~aLs~ll~QLn~NF~A~s~~lq~~fn~t~lni~~elD~ 80 (109)
T 2ieq_A 1 KAINNIVASFSSVNDAITQTAEAIHTVTIALNKIQDVVNQQGSALNHLTSQLRHNFQSGGRGSGRGGNLTYLNLSSELKQ 80 (109)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CCCCCHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcchHHHHHhhhhHHHHHHHHHH
Q ss_pred hhhhhhHHhHHHHHHHHHHHhh
Q 020751 202 IEGKQDITTLGVKKLCDRAREL 223 (322)
Q Consensus 202 iE~kQd~Tn~GV~~LC~f~~~~ 223 (322)
+|.+-+--..=...|-+++..+
T Consensus 81 LEa~A~~l~~~~~elq~~idn~ 102 (109)
T 2ieq_A 81 LEAKTASLFQTTVELQGLIDQI 102 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
No 205
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=24.44 E-value=2.4e+02 Score=21.53 Aligned_cols=64 Identities=13% Similarity=0.262 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhHhhhhhhHHHHHHHHHHH-----HHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020751 139 ISAAQRQLSSKITSVDRDVNKIVEISQAT-----QEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 139 LaaaKrhLsqRId~vD~klDeq~eis~~i-----~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
|..+..-|.++...++.+++++.++.+.- +.-...++.+ ......++.+.....+||.-+..||
T Consensus 11 Lr~~~d~L~kkq~~L~~~i~~e~~~Ak~~~~knK~~Al~aLkrK-K~~E~qL~q~~~ql~~LE~q~~~iE 79 (79)
T 4abm_A 11 LRDTEEMLSKKQEFLEKKIEQELTAAKKHGTKNKRAALQALKRK-KRYEKQLAQIDGTLSTIEFQREALE 79 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44555556666666666666666665531 1112222222 3344455566666666666555554
No 206
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=24.41 E-value=1.2e+02 Score=21.65 Aligned_cols=34 Identities=15% Similarity=0.328 Sum_probs=19.3
Q ss_pred HHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020751 171 VTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 204 (322)
Q Consensus 171 V~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~ 204 (322)
+..++.|--++..|-+++..++..|...|.++|.
T Consensus 12 iarlkkdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 12 IARLKKDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 3333344444555566666666666666666654
No 207
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=24.36 E-value=2.4e+02 Score=21.56 Aligned_cols=55 Identities=9% Similarity=0.219 Sum_probs=22.7
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020751 146 LSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 146 LsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
+++|++.+..+=.+..+-....++++.+-+..=++...+ ++.+.+.|++||+++.
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~E---lk~~~e~Ld~KI~eL~ 59 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSN---LKTLLEILDGKIFELT 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHH
Confidence 344444444443333333333333333333333333322 2333455566666554
No 208
>1svf_B Protein (fusion glycoprotein); paramyxovirus, SV5, coiled-coil, viral protein; 1.40A {Simian virus 5} SCOP: h.3.2.1
Probab=24.32 E-value=54 Score=22.16 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=17.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHHh
Q 020751 128 VARQLEDVYSSISAAQRQLSSK 149 (322)
Q Consensus 128 vtKqLeqVs~sLaaaKrhLsqR 149 (322)
++.+|.++..+|.+|+.||.+=
T Consensus 10 IS~eL~~~n~sl~~A~~~l~~S 31 (38)
T 1svf_B 10 ISQNLAAVNKSLSDALQHLAQS 31 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888889999998887653
No 209
>2kvm_A Chromobox protein homolog 7; histone modification, lysine methylation, chromobox, polycom chromatin-binding; HET: MLY; NMR {Mus musculus}
Probab=24.15 E-value=32 Score=25.63 Aligned_cols=25 Identities=32% Similarity=0.666 Sum_probs=21.1
Q ss_pred hheeeEEeccCCcCchhhhhhhhHHH
Q 020751 98 VGYGYVWWKGWKLPDMMFATRRSLSD 123 (322)
Q Consensus 98 vGYgYmwWKGwsfSDlMfVTKRnMsn 123 (322)
+=| ++.|||++-+|--|....||.+
T Consensus 29 ~~Y-lVKWkGy~~~~~TWEp~~~L~~ 53 (74)
T 2kvm_A 29 VEY-LVKWKGWPPKYSTWEPEEHILD 53 (74)
T ss_dssp EEE-EEEETTSCGGGCEEEETTTCSC
T ss_pred EEE-EEEEcCCCCccCeEeeHHHCCC
Confidence 335 7899999988999999999974
No 210
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=24.08 E-value=2.4e+02 Score=21.56 Aligned_cols=24 Identities=4% Similarity=-0.036 Sum_probs=9.0
Q ss_pred HHHHHHHHhhcchhhhhhHHHHHH
Q 020751 166 ATQEEVTILRGRSKLIGDEFQSVR 189 (322)
Q Consensus 166 ~i~~eV~~v~~dls~ig~Dv~~v~ 189 (322)
.+++++.+++..+..+...+..+.
T Consensus 68 ~~~~~l~~l~~~i~~l~~~i~~l~ 91 (112)
T 1l8d_A 68 KYHLDLNNSKNTLAKLIDRKSELE 91 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 211
>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*
Probab=24.01 E-value=1.9e+02 Score=22.26 Aligned_cols=51 Identities=12% Similarity=0.109 Sum_probs=34.2
Q ss_pred HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHH
Q 020751 145 QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 195 (322)
Q Consensus 145 hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~L 195 (322)
+|-++||.+|.+|=+.-+-=-.+-++|.+++..-..--.|-+--++++..+
T Consensus 16 ~lR~~ID~iD~~Ll~LL~~R~~~~~~Ig~~K~~~~~~i~dp~RE~~vl~~~ 66 (90)
T 2vkl_A 16 TLREEIDRLDAEILALVKRRAEVSKAIGKARMASGGTRLVHSREMKVIERY 66 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHH
Confidence 577789999999988877777777888888754332334444444444444
No 212
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=23.98 E-value=2.4e+02 Score=22.08 Aligned_cols=61 Identities=7% Similarity=0.040 Sum_probs=39.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHhHhhhhh--hHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 020751 129 ARQLEDVYSSISAAQRQLSSKITSVDR--DVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 189 (322)
Q Consensus 129 tKqLeqVs~sLaaaKrhLsqRId~vD~--klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 189 (322)
+.-++.--+-....-..++++|..+-. .-++-+.....++..+.++.+=|.++.-++.++.
T Consensus 14 SelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p 76 (102)
T 2qyw_A 14 SEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQQEANETLAEMEEELRYAP 76 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 444554445555555666666666522 2266677777888888888887777777777654
No 213
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=23.95 E-value=1.2e+02 Score=28.70 Aligned_cols=35 Identities=3% Similarity=0.113 Sum_probs=24.7
Q ss_pred hhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 020751 113 MMFATRRSLSDACNSVARQLEDVYSSISAAQRQLS 147 (322)
Q Consensus 113 lMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLs 147 (322)
.+|+.+=|+.+..+.+.++++++...++..++.|.
T Consensus 237 ~l~lA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (426)
T 1lrz_A 237 LVPLAYINFDEYIKELNEERDILNKDLNKALKDIE 271 (426)
T ss_dssp ECEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34556667777788888888877777777765553
No 214
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=23.86 E-value=2.6e+02 Score=21.75 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhh
Q 020751 120 SLSDACNSVARQLEDVYSSISAAQRQLSSKITSV 153 (322)
Q Consensus 120 nMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~v 153 (322)
+..+....++-....|+..+..|+++|...+...
T Consensus 43 s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~ 76 (113)
T 1xsv_A 43 SLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKL 76 (113)
T ss_dssp CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677777777888899999999998887654
No 215
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=23.78 E-value=3.7e+02 Score=23.52 Aligned_cols=39 Identities=13% Similarity=0.236 Sum_probs=30.3
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhh
Q 020751 116 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVD 154 (322)
Q Consensus 116 VTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD 154 (322)
-.||.+.+....+.|.+...+..+..+|+..-++-...+
T Consensus 114 kerK~~~~~~~k~~k~~~~~~~~l~kaKk~Y~~~c~e~~ 152 (290)
T 3i2w_A 114 KERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTER 152 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445778888888888899999999999998876655433
No 216
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=23.54 E-value=4.2e+02 Score=24.14 Aligned_cols=45 Identities=9% Similarity=0.148 Sum_probs=22.0
Q ss_pred HHHHHHHHHhHhhhhhhHHHH-HHHHHHHHHHHHHhhcchhhhhhH
Q 020751 140 SAAQRQLSSKITSVDRDVNKI-VEISQATQEEVTILRGRSKLIGDE 184 (322)
Q Consensus 140 aaaKrhLsqRId~vD~klDeq-~eis~~i~~eV~~v~~dls~ig~D 184 (322)
...|..+.++++.+-.+|.-. .++...+...+.+++..+.-.-.|
T Consensus 102 eelr~kl~~~veelk~~L~Py~eelr~k~~~~leeLr~~l~P~ae~ 147 (273)
T 3s84_A 102 DELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRRSLAPYAQD 147 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCSS
T ss_pred HHHHHHHHhhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 444555555555555555432 344444555555555555443333
No 217
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=23.45 E-value=1.4e+02 Score=23.23 Aligned_cols=16 Identities=0% Similarity=0.237 Sum_probs=6.7
Q ss_pred HHHHHHhHHHHHHHHH
Q 020751 125 CNSVARQLEDVYSSIS 140 (322)
Q Consensus 125 v~svtKqLeqVs~sLa 140 (322)
|..+-..|+.+...+.
T Consensus 14 v~~I~~~i~~i~~~v~ 29 (127)
T 1ez3_A 14 VEEIRGFIDKIAENVE 29 (127)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444433
No 218
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=23.40 E-value=4.7e+02 Score=26.05 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHH
Q 020751 184 EFQSVRDIVQTLESKLIEIEGKQDITTLGVKKL 216 (322)
Q Consensus 184 Dv~~v~~~V~~Le~Ki~~iE~kQd~Tn~GV~~L 216 (322)
|.+.+..-+..|..+|..+|....-...-+..+
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~ 149 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666665555555554
No 219
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=23.36 E-value=2.3e+02 Score=23.69 Aligned_cols=140 Identities=10% Similarity=0.115 Sum_probs=79.4
Q ss_pred HHHHHHhhhhcCCCCCCCCcchHHHHHHHHHHHH--HHhcC-CCceEEEeCCCCCCCCchHHH-HHHHhhhheeeEEecc
Q 020751 32 TLKIVSKLIKQDDPGPSDRKLFNDLLAEVSSVQQ--ELSHV-PRSVIIETSSGSGTGAKKYGV-IVVIVAVGYGYVWWKG 107 (322)
Q Consensus 32 alk~l~K~lk~~d~s~s~s~~~~dL~aQV~~Laq--Elr~L-sR~ITVvn~~ssg~gg~~y~l-~a~iGavGYgYmwWKG 107 (322)
.+++.+.-+++-++.|+ ....|.++.++|.+ +|+.. ..-...++++ . .| .... ..++..+.-
T Consensus 16 ~L~~ql~El~~~~l~~g---E~eeLe~e~~rL~nae~l~~~~~~a~~~L~~~--e-~~-~~~~L~~a~~~L~~------- 81 (175)
T 4abx_A 16 LLAFQVQEISEVSPDPG---EEEGLNTELSRLSNLHTIAQAAAGGVELLSDG--D-LN-AAGLIGEAVRALNA------- 81 (175)
T ss_dssp HHHHHHHHHHHHCCCTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--S-SC-HHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHhCCCCCC---hHHHHHHHHHHHHCHHHHHHHHHHHHHHHhCC--c-ch-HHHHHHHHHHHHHH-------
Confidence 34555555665555553 12228888888876 34443 3333344433 1 12 2222 122222210
Q ss_pred CCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH---HhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhH
Q 020751 108 WKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQRQLS---SKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDE 184 (322)
Q Consensus 108 wsfSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaKrhLs---qRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~D 184 (322)
++++ .-.=..+.+.+.++--+|+.++..|...-.++. .|++.|..+|+....+.+--...+.++-.-..++..+
T Consensus 82 --l~~~-d~~l~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~rL~~ie~RL~~l~~L~RKyg~~~eell~~~~~~~~e 158 (175)
T 4abx_A 82 --GAKY-DETVMQLQNELRAALESVQAIAGELRDVAEGSAADPEALDRVEARLSALSKLKNKYGPTLEDVVEFGAQAAEE 158 (175)
T ss_dssp --HHTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred --HHHh-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 0000 122356888888888999999999988777773 6888999999988888776654454444444444444
Q ss_pred HHHH
Q 020751 185 FQSV 188 (322)
Q Consensus 185 v~~v 188 (322)
+..+
T Consensus 159 L~~l 162 (175)
T 4abx_A 159 LAGL 162 (175)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 220
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=23.34 E-value=97 Score=25.58 Aligned_cols=44 Identities=14% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhh
Q 020751 158 NKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEG 204 (322)
Q Consensus 158 Deq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~ 204 (322)
|+-..++...+.||..++..++.| ...-+..|..|.++|..+|+
T Consensus 11 d~rD~~Ie~Lkreie~lk~ele~l---~~E~q~~v~ql~~~i~~Le~ 54 (120)
T 3i00_A 11 DEKDHLIERLYREISGLKAQLENM---KTESQRVVLQLKGHVSELEA 54 (120)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
No 221
>4gip_D Fusion glycoprotein F1; PIV5, viral fusion protein, membrane fusion, protease cleava activated form, ectodomain, trimer; HET: NAG; 2.00A {Simian virus 5}
Probab=23.23 E-value=59 Score=32.21 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=19.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHH
Q 020751 127 SVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRD 190 (322)
Q Consensus 127 svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~ 190 (322)
+++..|..|..+|..|+++| |+...+-+.+++++.++-.++-.|..++..++.
T Consensus 346 DIsteL~~vn~~L~~A~~~l-----------~~Sn~iL~svn~Ki~~~~~~~~~~~~~~~~~~~ 398 (409)
T 4gip_D 346 DISQNLAAVNKSLSDALQHL-----------AQSDTYLSAIEDKIEEILSKIYHIENEIARIKK 398 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHTC-----------------------
T ss_pred chhhhHHHHHHHHHHHHHHH-----------HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777777655 444444455555555555555555555555543
No 222
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3
Probab=23.22 E-value=2.1e+02 Score=21.46 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020751 162 EISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 162 eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
+....+...+-.+++.-..+|. ..+..+...+|.-++.+.
T Consensus 36 ~~~~~l~r~~HtLKGsa~~~G~--~~l~~la~~lE~~l~~~r 75 (105)
T 1tqg_A 36 ELINEAFRALHTLKGMAGTMGF--SSMAKLCHTLENILDKAR 75 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHhcCh--HHHHHHHHHHHHHHHHHH
Confidence 3344555555556665555553 355556666666555443
No 223
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=23.19 E-value=2.8e+02 Score=21.85 Aligned_cols=27 Identities=19% Similarity=0.197 Sum_probs=14.7
Q ss_pred hhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 020751 117 TRRSLSDACNSVARQLEDVYSSISAAQ 143 (322)
Q Consensus 117 TKRnMsnAv~svtKqLeqVs~sLaaaK 143 (322)
+++||..|..+==+-=+-+++.|..+|
T Consensus 11 ~~leLQSALeaEIqAKQ~i~EELs~vr 37 (81)
T 1wt6_A 11 TLRELQEALEEEVLTRQSLSREMEAIR 37 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777887776653333333444444444
No 224
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=23.18 E-value=1.7e+02 Score=21.21 Aligned_cols=41 Identities=17% Similarity=0.312 Sum_probs=25.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHH
Q 020751 153 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQ 193 (322)
Q Consensus 153 vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~ 193 (322)
|+.++...++-.+.|.+-|.++...++.+.-=++.+|+-+.
T Consensus 2 le~~I~~Lk~ai~~TNeAV~~L~~g~~~la~Av~~iQ~~IN 42 (51)
T 3kpe_A 2 LEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVLDLKNYID 42 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666777777776777666666665543
No 225
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=22.96 E-value=3e+02 Score=22.22 Aligned_cols=66 Identities=11% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Q 020751 123 DACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSV 188 (322)
Q Consensus 123 nAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v 188 (322)
.|-.....-.+...+.|.+.|..|..+|..+..++++..+.......+=..+..+++....|++..
T Consensus 58 ~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 58 QAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 226
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=22.96 E-value=1.3e+02 Score=21.31 Aligned_cols=31 Identities=13% Similarity=0.133 Sum_probs=24.3
Q ss_pred HHHHHhHhhhhhhHHHHHHHHHHHHHHHHHh
Q 020751 144 RQLSSKITSVDRDVNKIVEISQATQEEVTIL 174 (322)
Q Consensus 144 rhLsqRId~vD~klDeq~eis~~i~~eV~~v 174 (322)
..|...||+|.++|...++--+.|.+++.-.
T Consensus 15 ~KLek~ID~LEdeL~~eKek~~~i~~eLD~t 45 (52)
T 2z5i_A 15 ARLKKLVDDLEDELYAQKLKYKAISEELDHA 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4577888999999988888888888777543
No 227
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=22.82 E-value=3.6e+02 Score=23.11 Aligned_cols=76 Identities=14% Similarity=0.195 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHH---HHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHH
Q 020751 120 SLSDACNSVARQLEDVYSSISAAQR---QLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 195 (322)
Q Consensus 120 nMsnAv~svtKqLeqVs~sLaaaKr---hLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~L 195 (322)
...+-+..++.+|...-..-..|-| .|..-||++.++|+..++--+.|.+++...-.++..|..++..+..-|..|
T Consensus 74 ~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~~~ 152 (155)
T 2efr_A 74 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVARL 152 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHh
No 228
>2d9u_A Chromobox protein homolog 2 (isoform 2); chromobox homolog 2, chromo domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.74 E-value=23 Score=26.43 Aligned_cols=25 Identities=24% Similarity=0.686 Sum_probs=21.6
Q ss_pred hheeeEEeccCCcCchhhhhhhhHHH
Q 020751 98 VGYGYVWWKGWKLPDMMFATRRSLSD 123 (322)
Q Consensus 98 vGYgYmwWKGwsfSDlMfVTKRnMsn 123 (322)
+=| ++.|||++-.|--|....||.+
T Consensus 26 ~~Y-lVKWkGy~~~~~TWEp~~nl~~ 50 (74)
T 2d9u_A 26 LEY-LVKWRGWSSKHNSWEPEENILD 50 (74)
T ss_dssp EEE-EEEETTSCTTTCEEEEGGGCCC
T ss_pred EEE-EEEECCCCCccCccccHHHCCC
Confidence 335 8999999999999999999986
No 229
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=22.64 E-value=2.3e+02 Score=20.75 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=21.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhHhhhh
Q 020751 125 CNSVARQLEDVYSSISAAQRQLSSKITSVD 154 (322)
Q Consensus 125 v~svtKqLeqVs~sLaaaKrhLsqRId~vD 154 (322)
.+.|-.|++.|...+..+...+..|-++|+
T Consensus 6 i~~v~~qv~ev~~iM~~ni~kvlERGekL~ 35 (63)
T 1urq_A 6 IEGVKGAASGVVGELARARLALDERGQKLS 35 (63)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677778888888888888877766554
No 230
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=22.63 E-value=2.2e+02 Score=20.59 Aligned_cols=47 Identities=9% Similarity=0.102 Sum_probs=20.7
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHH
Q 020751 149 KITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTL 195 (322)
Q Consensus 149 RId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~L 195 (322)
|+++=.++|+++..+...|.+-=..+-.+|..=++-+...+..+...
T Consensus 3 rL~~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~ 49 (65)
T 1gl2_C 3 HMNRATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNT 49 (65)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhH
Confidence 44444455555555555554444344444444444444444333333
No 231
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=22.43 E-value=52 Score=21.80 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=18.1
Q ss_pred HHHHHHHHhhcchhhhhhHHHHHHH
Q 020751 166 ATQEEVTILRGRSKLIGDEFQSVRD 190 (322)
Q Consensus 166 ~i~~eV~~v~~dls~ig~Dv~~v~~ 190 (322)
.|+.|+..++..+..|.+++..|++
T Consensus 6 aikqelaaikkelaaikfelaaikq 30 (34)
T 3r4h_A 6 AIKQELAAIKKELAAIKFELAAIKQ 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4667777777777778888777663
No 232
>3p8q_A GP5, head protein; virus procapsid particles, virus; 5.20A {Enterobacteria phage HK97} PDB: 3qpr_A
Probab=22.38 E-value=18 Score=34.11 Aligned_cols=64 Identities=14% Similarity=0.218 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhh
Q 020751 133 EDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIE 203 (322)
Q Consensus 133 eqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE 203 (322)
.++.++|..+-+++.+.-|.--.++++-.++...++++| .++..+++.++.-+..||.|+.+..
T Consensus 5 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~ 68 (385)
T 3p8q_A 5 ALIQKAIEESQQKMTQLFDAQKAEIESTGQVSKQLQSDL-------MKVQEELTKSGTRLFDLEQKLASGA 68 (385)
T ss_dssp -----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhcccc
Confidence 334444444444444433333333333344455555555 5555566666666666777766553
No 233
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=22.30 E-value=4.6e+02 Score=24.13 Aligned_cols=40 Identities=3% Similarity=0.153 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHH-HHHHHHhHhhhhhhHHHH
Q 020751 121 LSDACNSVARQLEDVYSSISAA-QRQLSSKITSVDRDVNKI 160 (322)
Q Consensus 121 MsnAv~svtKqLeqVs~sLaaa-KrhLsqRId~vD~klDeq 160 (322)
..+.+..+.+.+|.+.+.+-.. ++....||-.+.+++-..
T Consensus 193 y~~~l~~l~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~l 233 (363)
T 2iub_A 193 YFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVEL 233 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 3344444555555554444321 223334444444444333
No 234
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=22.10 E-value=3.6e+02 Score=22.76 Aligned_cols=67 Identities=12% Similarity=0.309 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHH----HhHhhhhhhHHHH-HHHHHHHHHHHHHhhcchhhhhhHHH
Q 020751 120 SLSDACNSVARQLEDVYSSISAAQRQLS----SKITSVDRDVNKI-VEISQATQEEVTILRGRSKLIGDEFQ 186 (322)
Q Consensus 120 nMsnAv~svtKqLeqVs~sLaaaKrhLs----qRId~vD~klDeq-~eis~~i~~eV~~v~~dls~ig~Dv~ 186 (322)
......+.+.|.|+.+...|.--..++. +.++.+-.+|.=. .++.+.++.++.++|..|.-+..++.
T Consensus 79 ~~~~Lr~~l~kdlee~r~~l~P~~~e~~~~~~~~~e~lr~~l~Py~~el~~~~~~~~e~Lr~~L~p~~e~lr 150 (185)
T 3r2p_A 79 ETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLRAELQEGARQKLHELQEKLSPLGEEMR 150 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 3455667777778877766665555544 4444455554432 45666777778888888888777764
No 235
>3l4f_A RHO guanine nucleotide exchange factor 7; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}
Probab=21.98 E-value=1.6e+02 Score=22.13 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=32.1
Q ss_pred HHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 020751 165 QATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKLIEIEGKQD 207 (322)
Q Consensus 165 ~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki~~iE~kQd 207 (322)
=++++||.+++.+......=++..+.+-..||.-+-.+-..+|
T Consensus 10 YalkDev~eLk~e~k~~k~~le~eqraRk~LE~~vrk~~k~~n 52 (61)
T 3l4f_A 10 YALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMN 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4568888888888887777788888888888876666655544
No 236
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=21.96 E-value=1.1e+02 Score=26.11 Aligned_cols=12 Identities=25% Similarity=0.426 Sum_probs=4.5
Q ss_pred HHHHHHHHhhcc
Q 020751 166 ATQEEVTILRGR 177 (322)
Q Consensus 166 ~i~~eV~~v~~d 177 (322)
.+..++.++|..
T Consensus 103 ~L~~d~EelR~~ 114 (165)
T 1gs9_A 103 RLGADMEDVRGR 114 (165)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 237
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=21.93 E-value=2.7e+02 Score=25.55 Aligned_cols=39 Identities=3% Similarity=0.095 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHH
Q 020751 121 LSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIV 161 (322)
Q Consensus 121 MsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~ 161 (322)
|..+|+.+...+..+......+-++|..+|++ .+|....
T Consensus 132 L~~v~~~Le~e~~~l~~~~~~~L~~L~~~i~~--~~L~~Ll 170 (261)
T 3rkg_A 132 FINVMSALETDFKLHSQICIQILNDLENEVNR--LKLRHLL 170 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCH--HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH--HHHHHHH
Confidence 55677777777777887777888888877765 4555443
No 238
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=21.82 E-value=3.4e+02 Score=24.63 Aligned_cols=34 Identities=9% Similarity=0.190 Sum_probs=27.7
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 020751 116 ATRRSLSDACNSVARQLEDVYSSISAAQRQLSSK 149 (322)
Q Consensus 116 VTKRnMsnAv~svtKqLeqVs~sLaaaKrhLsqR 149 (322)
=.+|.+.+...-+.|++.+.+..|..+|+..-++
T Consensus 127 ke~K~~~~~~~k~qk~~~~~~~~l~kaKk~Y~~~ 160 (320)
T 3m3w_A 127 RASRAAEDGFRKAQKPWLKRLKEVEASKKSYHTA 160 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888888889999999999999887664
No 239
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=21.82 E-value=1.2e+02 Score=24.51 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=4.2
Q ss_pred HHHHhHhhhhhhHHHHHHH
Q 020751 145 QLSSKITSVDRDVNKIVEI 163 (322)
Q Consensus 145 hLsqRId~vD~klDeq~ei 163 (322)
+|+..|+.+...+++...+
T Consensus 3 ~l~~~~~~l~~~~~~~~~l 21 (182)
T 3kqg_A 3 TLNAQIPELKSDLEKASAL 21 (182)
T ss_dssp ----------CHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHHH
Confidence 3445555555555544333
No 240
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=21.73 E-value=16 Score=32.01 Aligned_cols=14 Identities=21% Similarity=0.005 Sum_probs=11.1
Q ss_pred ceEeeccceeeeec
Q 020751 4 FFSCVSGILTSVLA 17 (322)
Q Consensus 4 lILvGAG~~GSVl~ 17 (322)
+|+||||++|..++
T Consensus 7 ViIVGaGpaGl~~A 20 (397)
T 3oz2_A 7 VLVVGGGPGGSTAA 20 (397)
T ss_dssp EEEECCSHHHHHHH
T ss_pred EEEECcCHHHHHHH
Confidence 58999999987543
No 241
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=21.71 E-value=2e+02 Score=26.24 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=8.6
Q ss_pred hhhHHHHHHHHHHhHHHHHHHHH
Q 020751 118 RRSLSDACNSVARQLEDVYSSIS 140 (322)
Q Consensus 118 KRnMsnAv~svtKqLeqVs~sLa 140 (322)
|+.++.-.+.+-+.+.++...|.
T Consensus 166 k~yLa~R~~~lK~kl~~l~~~L~ 188 (228)
T 3q0x_A 166 KQFLAFRLSEVKGTCHDLSDDLS 188 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 242
>1lwu_A Fibrinogen alpha-1 chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: h.1.8.1 PDB: 1n73_A*
Probab=21.71 E-value=1.1e+02 Score=25.80 Aligned_cols=30 Identities=17% Similarity=0.371 Sum_probs=18.7
Q ss_pred HHHHhHhhhhhhHHHHHHH----HHHHHHHHHHh
Q 020751 145 QLSSKITSVDRDVNKIVEI----SQATQEEVTIL 174 (322)
Q Consensus 145 hLsqRId~vD~klDeq~ei----s~~i~~eV~~v 174 (322)
.|-.||+.|-.|+++|... +..|+++|.++
T Consensus 26 dLrrrIe~LkrKV~~Qvq~i~~Lq~nVrdQvveM 59 (119)
T 1lwu_A 26 ELERRIIHLQRRINMQLQQLTLLQHNIKTQVSQI 59 (119)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667888777777776655 45555555443
No 243
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=21.55 E-value=1.5e+02 Score=21.17 Aligned_cols=30 Identities=23% Similarity=0.417 Sum_probs=11.6
Q ss_pred HHHhHhhhhhhHHHHHHHHHHHHHHHHHhh
Q 020751 146 LSSKITSVDRDVNKIVEISQATQEEVTILR 175 (322)
Q Consensus 146 LsqRId~vD~klDeq~eis~~i~~eV~~v~ 175 (322)
|..+++.+..+=....+.-+.-++++..++
T Consensus 14 l~~~l~~L~~rN~rL~~~L~~AR~el~~Lk 43 (51)
T 3m91_A 14 LEARIDSLAARNSKLMETLKEARQQLLALR 43 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333343333333333333344433333
No 244
>2b9b_A Fusion glycoprotein F0; fusion protein, PRE-fusion conformation, viral protein; HET: NAG; 2.85A {Simian virus 5}
Probab=21.46 E-value=2.1e+02 Score=29.04 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=18.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH
Q 020751 127 SVARQLEDVYSSISAAQRQLSS 148 (322)
Q Consensus 127 svtKqLeqVs~sLaaaKrhLsq 148 (322)
+++.+|.+|-.+|..++.||.+
T Consensus 427 DISseL~~vn~sl~~a~~~I~~ 448 (497)
T 2b9b_A 427 DISQNLAAVNKSLSDALQHLAQ 448 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999988754
No 245
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=21.16 E-value=1e+02 Score=20.80 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=12.0
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHh
Q 020751 149 KITSVDRDVNKIVEISQATQEEVTIL 174 (322)
Q Consensus 149 RId~vD~klDeq~eis~~i~~eV~~v 174 (322)
|...|.+|+++...=-....+||..+
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl 27 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARV 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 44444555554444444444444433
No 246
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=20.90 E-value=3.7e+02 Score=22.54 Aligned_cols=21 Identities=0% Similarity=0.246 Sum_probs=11.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHH
Q 020751 123 DACNSVARQLEDVYSSISAAQ 143 (322)
Q Consensus 123 nAv~svtKqLeqVs~sLaaaK 143 (322)
+-|..+...+++++..+...+
T Consensus 47 ~~ve~i~~~i~~i~~~v~el~ 67 (279)
T 3c98_B 47 EQVEEIRGFIDKIAENVEEVK 67 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666665555443
No 247
>2b2y_C CHD-1, chromodomain-helicase-DNA-binding protein 1; three stranded antiparallel beta sheet, alpha helix linker, peptide binding protein; 2.35A {Homo sapiens} SCOP: b.34.13.2 PDB: 2b2u_C* 2b2v_C* 2b2t_C* 2b2w_C
Probab=20.81 E-value=35 Score=28.31 Aligned_cols=23 Identities=26% Similarity=0.586 Sum_probs=20.6
Q ss_pred eeEEeccCCcCchhhhhhhhHHH
Q 020751 101 GYVWWKGWKLPDMMFATRRSLSD 123 (322)
Q Consensus 101 gYmwWKGwsfSDlMfVTKRnMsn 123 (322)
-++.|||||..+=-|-+..||..
T Consensus 60 YlVKWkG~s~~~nTWEp~enL~~ 82 (115)
T 2b2y_C 60 YLIKWKGWSHIHNTWETEETLKQ 82 (115)
T ss_dssp EEEEETTSCGGGCEEECHHHHHH
T ss_pred EEEEECCCCchhcccCCHHHcCC
Confidence 47999999999999999999875
No 248
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=20.65 E-value=2.2e+02 Score=19.76 Aligned_cols=20 Identities=15% Similarity=0.292 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhhcchhhh
Q 020751 162 EISQATQEEVTILRGRSKLI 181 (322)
Q Consensus 162 eis~~i~~eV~~v~~dls~i 181 (322)
.++..++.-++.+...++.+
T Consensus 66 ~~shel~~~l~~i~~~~~~l 85 (115)
T 3zrx_A 66 GVSHDLRTPLTRIRLATEMM 85 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 33444444444444433333
No 249
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=20.40 E-value=98 Score=20.87 Aligned_cols=28 Identities=7% Similarity=0.311 Sum_probs=16.5
Q ss_pred hHhhhhhhHHHHHHHHHHHHHHHHHhhc
Q 020751 149 KITSVDRDVNKIVEISQATQEEVTILRG 176 (322)
Q Consensus 149 RId~vD~klDeq~eis~~i~~eV~~v~~ 176 (322)
|...+.+|+++...--..+.+||..++.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~ 29 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4555666666666666666666655543
No 250
>2l7b_A Apolipoprotein E, APO-E; lipid transport, atherosclerosis, alzheime disease; NMR {Homo sapiens}
Probab=20.34 E-value=1.7e+02 Score=27.46 Aligned_cols=61 Identities=11% Similarity=0.176 Sum_probs=28.5
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHh----hhhhhHHHH-HHHHHHHHHHHHHhhcchhh
Q 020751 120 SLSDACNSVARQLEDVYSSISAAQRQLSSKIT----SVDRDVNKI-VEISQATQEEVTILRGRSKL 180 (322)
Q Consensus 120 nMsnAv~svtKqLeqVs~sLaaaKrhLsqRId----~vD~klDeq-~eis~~i~~eV~~v~~dls~ 180 (322)
.....-+.+.+.++.+-.-|.-=...|..+++ .+-.+|.-. .|+...++.++.++|..|.-
T Consensus 104 ~~~~Lr~~L~~dlEelR~~L~Py~~el~~~l~~~~eelr~kL~Py~~EL~~~~~~~~eeLr~~L~p 169 (307)
T 2l7b_A 104 ELQAAQARLGADMEDVCGRLVQYRGEVQAMLGQSTEELRVRLASHLRKLRKRLLRDADDLQKRLAV 169 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhh
Confidence 34444455555555555555444333333332 333333321 23445555556666666543
No 251
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=20.26 E-value=2.8e+02 Score=21.02 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=27.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHH
Q 020751 153 VDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVRDIVQTLESKL 199 (322)
Q Consensus 153 vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~~~V~~Le~Ki 199 (322)
++...++..++......++..++.|+...-.|-+.+-++=..||-.|
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EI 49 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEI 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666666666666666666665555555555443
No 252
>3lwe_A M-phase phosphoprotein 8; MPP8, structural genomics, structural genomics consortium, S repeat, nucleus, cell cycle; 2.05A {Homo sapiens} SCOP: b.34.13.0 PDB: 3r93_A* 3svm_A* 3qo2_A*
Probab=20.23 E-value=29 Score=25.04 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=27.4
Q ss_pred eeEEeccCCcCchhhhhhhhHHHHHHHHHHhHHHHHHHHHHHH
Q 020751 101 GYVWWKGWKLPDMMFATRRSLSDACNSVARQLEDVYSSISAAQ 143 (322)
Q Consensus 101 gYmwWKGwsfSDlMfVTKRnMsnAv~svtKqLeqVs~sLaaaK 143 (322)
-++.|||+.-+|--+-...||.++-. -|++.....+..|
T Consensus 22 YlVkWkGy~~~~~TWEp~~nl~~~~~----li~~f~~~~~~~k 60 (62)
T 3lwe_A 22 YKVRWKGYTSDDDTWEPEIHLEDCKE----VLLEFRKKIAENK 60 (62)
T ss_dssp EEEEETTSCGGGCEEEEHHHHTTCHH----HHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcCCCeeeHhHhhccHH----HHHHHHHhhHhhc
Confidence 46899999988899999999865433 3455555555444
No 253
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=20.22 E-value=3e+02 Score=23.73 Aligned_cols=25 Identities=12% Similarity=0.040 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhhcchhhhhhHH
Q 020751 161 VEISQATQEEVTILRGRSKLIGDEF 185 (322)
Q Consensus 161 ~eis~~i~~eV~~v~~dls~ig~Dv 185 (322)
.++.+.++.++.++|..|+-+..|+
T Consensus 98 e~lr~~l~kdlEelr~kL~P~~eEL 122 (191)
T 1nfn_A 98 QAAQARLGADMEDVCGRLVQYRGEV 122 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444456666666666666655554
No 254
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=20.22 E-value=83 Score=28.23 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhh
Q 020751 185 FQSVRDIVQTLESKLIEIEGK 205 (322)
Q Consensus 185 v~~v~~~V~~Le~Ki~~iE~k 205 (322)
++.++.++..|+.+|..++.+
T Consensus 92 ~~~L~~~~~~l~~~i~~~~~~ 112 (249)
T 3qao_A 92 KQRIETMLATLDLTIKNEKGE 112 (249)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhcC
Confidence 334444444444444444443
No 255
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=20.17 E-value=2.8e+02 Score=20.85 Aligned_cols=27 Identities=7% Similarity=-0.039 Sum_probs=11.7
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHHHHH
Q 020751 116 ATRRSLSDACNSVARQLEDVYSSISAA 142 (322)
Q Consensus 116 VTKRnMsnAv~svtKqLeqVs~sLaaa 142 (322)
|+=--|.++...+...-+++.+.|..-
T Consensus 11 v~~~~l~~~a~~~~~~~~~i~~~l~~L 37 (103)
T 4i0x_B 11 FDLDHIEQVTSRARGFKEFVTENLDQL 37 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444433
No 256
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=20.07 E-value=83 Score=33.07 Aligned_cols=29 Identities=10% Similarity=0.298 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Q 020751 121 LSDACNSVARQLEDVYSSISAAQRQLSSK 149 (322)
Q Consensus 121 MsnAv~svtKqLeqVs~sLaaaKrhLsqR 149 (322)
|.+|+.-|++++.++...++++|+++...
T Consensus 622 l~~ti~kv~~rv~~~~~~~~~~~~~~~~~ 650 (771)
T 1h2v_C 622 LHSTIRKMNKHVLKIQKELEEAKEKLARQ 650 (771)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56677777777777777777777666553
No 257
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=20.00 E-value=5.3e+02 Score=23.90 Aligned_cols=67 Identities=12% Similarity=0.253 Sum_probs=40.3
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHhhhhhhHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Q 020751 119 RSLSDACNSVARQLEDVYSSISAAQRQLSSKITSVDRDVNKIVEISQATQEEVTILRGRSKLIGDEFQSVR 189 (322)
Q Consensus 119 RnMsnAv~svtKqLeqVs~sLaaaKrhLsqRId~vD~klDeq~eis~~i~~eV~~v~~dls~ig~Dv~~v~ 189 (322)
..|.+-.++|...||- |.--|.=...-|..+|.|+++...+.+.+-+.+..+..+=.....|+..|.
T Consensus 152 ~~Lkk~~~~i~~~Lel----L~IRK~ma~sEI~EID~KI~~L~~mR~~vl~RLA~lEqdEl~LE~eL~~V~ 218 (242)
T 3uux_B 152 SALKSFSQTLVNSLEF----LNIQKNSTLSEIRDIEVEVENLRQKKEKLLGKIANIEQNQLLLEDNLKQID 218 (242)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4566666666666654 333444445567777777777777777777777666555444444444433
Done!