Query 020752
Match_columns 322
No_of_seqs 284 out of 896
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 07:40:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020752.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020752hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uss_A Histone H1; DNA binding 99.9 2E-22 6.8E-27 160.8 9.0 73 146-218 4-83 (88)
2 1hst_A Histone H5; chromosomal 99.9 1.4E-22 4.7E-27 162.6 7.8 73 146-218 4-81 (90)
3 1uhm_A Histone H1, histone HHO 99.9 1.7E-22 5.9E-27 157.5 7.3 70 147-216 2-77 (78)
4 1ust_A Histone H1; DNA binding 99.8 1E-21 3.4E-26 158.4 6.0 73 146-218 4-82 (93)
5 2rqp_A Heterochromatin protein 99.8 6.5E-22 2.2E-26 157.5 2.4 72 146-217 6-84 (88)
6 1ghc_A GH1; chromosomal protei 99.8 1.3E-20 4.6E-25 145.2 1.1 67 148-215 2-74 (75)
7 1x58_A Hypothetical protein 49 99.8 5.1E-19 1.7E-23 133.2 5.8 55 3-61 6-60 (62)
8 2lso_A Histone H1X; structural 99.6 5.3E-20 1.8E-24 145.5 0.0 70 149-218 5-80 (83)
9 2aje_A Telomere repeat-binding 99.7 2.9E-18 1E-22 141.2 6.9 61 2-64 10-70 (105)
10 2roh_A RTBP1, telomere binding 99.7 7.5E-18 2.6E-22 142.1 4.9 60 2-63 28-87 (122)
11 2ckx_A NGTRF1, telomere bindin 99.7 9.2E-18 3.1E-22 132.8 4.4 57 6-64 1-57 (83)
12 2juh_A Telomere binding protei 99.7 9.7E-18 3.3E-22 141.2 3.6 58 2-61 14-71 (121)
13 3sjm_A Telomeric repeat-bindin 99.7 4.8E-17 1.7E-21 122.5 5.4 54 3-60 9-62 (64)
14 1w0t_A Telomeric repeat bindin 99.6 1.6E-15 5.6E-20 109.2 5.6 52 4-59 1-52 (53)
15 1ity_A TRF1; helix-turn-helix, 99.5 4.9E-15 1.7E-19 112.0 5.9 56 2-61 7-62 (69)
16 1guu_A C-MYB, MYB proto-oncoge 99.4 9E-14 3.1E-18 99.3 5.8 50 4-59 2-51 (52)
17 2d9a_A B-MYB, MYB-related prot 99.4 1.2E-13 4.1E-18 101.5 6.2 54 2-61 5-58 (60)
18 1gvd_A MYB proto-oncogene prot 99.4 2.6E-13 8.9E-18 97.0 6.2 50 4-59 2-51 (52)
19 2dim_A Cell division cycle 5-l 99.4 1E-12 3.5E-17 99.4 6.3 54 2-61 6-59 (70)
20 1x41_A Transcriptional adaptor 99.3 1.2E-12 4.1E-17 96.6 5.9 54 2-61 5-58 (60)
21 2elk_A SPCC24B10.08C protein; 99.3 2.8E-12 9.6E-17 94.2 5.1 48 4-57 8-56 (58)
22 2llk_A Cyclin-D-binding MYB-li 99.2 1.8E-11 6.3E-16 94.6 5.5 50 3-60 21-70 (73)
23 1gv2_A C-MYB, MYB proto-oncoge 99.1 5.2E-11 1.8E-15 95.7 6.8 52 3-60 2-53 (105)
24 2cu7_A KIAA1915 protein; nucle 99.1 3.1E-11 1.1E-15 91.9 4.7 52 3-61 7-58 (72)
25 2k9n_A MYB24; R2R3 domain, DNA 99.1 5.7E-11 2E-15 96.3 5.8 51 5-61 1-51 (107)
26 2yum_A ZZZ3 protein, zinc fing 99.1 4.3E-11 1.5E-15 91.5 4.5 52 3-60 6-62 (75)
27 3zqc_A MYB3; transcription-DNA 99.1 1.1E-10 3.6E-15 97.9 6.8 51 5-61 2-52 (131)
28 3osg_A MYB21; transcription-DN 99.1 1.2E-10 4.1E-15 97.1 6.2 53 2-61 8-60 (126)
29 2din_A Cell division cycle 5-l 99.1 6.6E-11 2.3E-15 88.5 4.1 51 3-61 7-57 (66)
30 1h8a_C AMV V-MYB, MYB transfor 99.1 1.5E-10 5.2E-15 96.3 6.3 53 3-61 25-77 (128)
31 2yus_A SWI/SNF-related matrix- 99.0 1.4E-10 4.6E-15 90.7 4.3 47 4-57 17-63 (79)
32 1gv2_A C-MYB, MYB proto-oncoge 99.0 4.5E-10 1.5E-14 90.2 6.3 50 3-59 54-103 (105)
33 3zqc_A MYB3; transcription-DNA 99.0 5.5E-10 1.9E-14 93.5 6.0 56 3-65 52-108 (131)
34 3osg_A MYB21; transcription-DN 99.0 5.8E-10 2E-14 92.9 5.8 52 3-61 60-111 (126)
35 2k9n_A MYB24; R2R3 domain, DNA 98.9 5.8E-10 2E-14 90.4 5.0 51 3-60 51-101 (107)
36 2cqr_A RSGI RUH-043, DNAJ homo 98.9 7.7E-10 2.6E-14 85.4 5.0 52 4-61 17-71 (73)
37 1h8a_C AMV V-MYB, MYB transfor 98.9 1.4E-09 4.8E-14 90.4 6.2 50 3-59 77-126 (128)
38 1h89_C C-MYB, MYB proto-oncoge 98.9 2.5E-09 8.7E-14 91.8 6.5 52 3-60 56-107 (159)
39 2ltp_A Nuclear receptor corepr 98.4 2.6E-10 8.8E-15 90.6 0.0 52 3-61 14-65 (89)
40 1h89_C C-MYB, MYB proto-oncoge 98.9 4.4E-10 1.5E-14 96.6 1.3 53 3-61 4-56 (159)
41 2cjj_A Radialis; plant develop 98.6 2.9E-08 9.8E-13 79.9 4.7 50 4-59 7-59 (93)
42 1ign_A Protein (RAP1); RAP1,ye 98.5 6.3E-08 2.1E-12 89.9 5.4 52 4-61 7-63 (246)
43 2eqr_A N-COR1, N-COR, nuclear 98.4 5.3E-07 1.8E-11 66.6 5.8 49 4-59 11-59 (61)
44 2cqq_A RSGI RUH-037, DNAJ homo 98.2 1.4E-06 4.8E-11 66.9 4.5 51 3-60 6-59 (72)
45 3hm5_A DNA methyltransferase 1 97.9 8.9E-06 3E-10 65.6 4.6 53 6-60 31-83 (93)
46 2iw5_B Protein corest, REST co 97.8 2.1E-05 7.2E-10 72.5 5.4 52 3-61 131-182 (235)
47 4b4c_A Chromodomain-helicase-D 97.7 3.8E-05 1.3E-09 68.0 6.3 55 5-59 134-196 (211)
48 1wgx_A KIAA1903 protein; MYB D 97.7 4.2E-05 1.4E-09 59.1 4.5 49 6-60 9-60 (73)
49 1fex_A TRF2-interacting telome 97.3 0.00019 6.6E-09 52.9 4.3 49 5-58 2-58 (59)
50 2xb0_X Chromo domain-containin 97.2 0.00015 5E-09 68.3 3.3 32 7-38 170-201 (270)
51 2ebi_A DNA binding protein GT- 97.1 0.00016 5.6E-09 56.0 2.2 54 4-59 3-65 (86)
52 4iej_A DNA methyltransferase 1 97.1 0.00047 1.6E-08 55.6 4.6 52 6-59 31-82 (93)
53 2yqk_A Arginine-glutamic acid 97.0 0.0011 3.6E-08 49.2 5.8 51 4-60 8-58 (63)
54 1ofc_X ISWI protein; nuclear p 96.8 0.00095 3.3E-08 63.8 4.4 58 3-60 210-276 (304)
55 2crg_A Metastasis associated p 96.8 0.0022 7.4E-08 48.6 5.5 53 3-61 6-58 (70)
56 2xag_B REST corepressor 1; ami 96.4 0.003 1E-07 63.8 5.4 52 4-62 379-430 (482)
57 4eef_G F-HB80.4, designed hema 96.1 0.0017 6E-08 50.3 1.7 43 6-54 21-66 (74)
58 4a69_C Nuclear receptor corepr 96.0 0.0097 3.3E-07 47.5 5.5 47 5-58 43-89 (94)
59 2y9y_A Imitation switch protei 95.7 0.0078 2.7E-07 59.0 4.6 56 4-59 227-291 (374)
60 2a07_F Forkhead box protein P2 94.3 0.09 3.1E-06 42.1 6.3 58 147-208 3-64 (93)
61 3g73_A Forkhead box protein M1 94.3 0.085 2.9E-06 45.3 6.5 73 142-218 13-96 (142)
62 1ug2_A 2610100B20RIK gene prod 94.2 0.064 2.2E-06 43.2 5.1 53 2-60 30-84 (95)
63 1irz_A ARR10-B; helix-turn-hel 93.9 0.11 3.7E-06 39.1 5.7 52 2-57 4-60 (64)
64 2c6y_A Forkhead box protein K2 93.8 0.13 4.4E-06 42.4 6.4 61 144-208 13-77 (111)
65 4b4c_A Chromodomain-helicase-D 93.7 0.044 1.5E-06 48.2 3.7 50 4-57 6-57 (211)
66 1vtn_C HNF-3/FORK head DNA-rec 93.4 0.16 5.6E-06 41.1 6.3 58 147-208 3-64 (102)
67 2hfh_A Genesis, HFH-2; HNF-3 h 93.0 0.18 6.3E-06 41.4 6.1 58 147-208 3-64 (109)
68 2hdc_A Protein (transcription 92.8 0.14 4.9E-06 41.1 5.1 58 147-208 2-63 (97)
69 2lr8_A CAsp8-associated protei 91.4 0.026 9E-07 43.2 0.0 51 3-60 12-64 (70)
70 1ign_A Protein (RAP1); RAP1,ye 92.0 0.15 5.3E-06 47.3 4.8 50 5-60 94-200 (246)
71 3l2c_A Forkhead box protein O4 91.8 0.42 1.4E-05 39.2 6.7 60 146-209 23-91 (110)
72 1kq8_A HFH-1, hepatocyte nucle 91.6 0.18 6.2E-06 40.8 4.4 57 148-208 3-63 (100)
73 3bpy_A FORK head domain, forkh 91.3 0.54 1.8E-05 36.8 6.7 59 147-209 5-72 (85)
74 3coa_C Forkhead box protein O1 90.4 0.62 2.1E-05 38.7 6.6 59 147-209 11-78 (117)
75 2xb0_X Chromo domain-containin 88.8 0.59 2E-05 43.8 5.9 53 4-60 2-56 (270)
76 1e17_A AFX; DNA binding domain 84.4 1.3 4.3E-05 38.4 5.2 59 147-209 40-107 (150)
77 2xag_B REST corepressor 1; ami 73.0 0.72 2.5E-05 46.6 0.0 44 6-56 190-233 (482)
78 1r7j_A Conserved hypothetical 58.8 13 0.00044 28.8 4.7 57 151-216 5-61 (95)
79 1ofc_X ISWI protein; nuclear p 57.9 13 0.00045 35.3 5.4 46 6-57 111-156 (304)
80 1qgp_A Protein (double strande 57.2 15 0.00052 27.4 4.7 58 152-216 15-75 (77)
81 2kpm_A Uncharacterized protein 52.7 23 0.00078 28.7 5.3 39 150-188 20-61 (105)
82 3fbl_A Putative uncharacterize 50.6 12 0.00042 28.3 3.1 29 154-182 51-82 (82)
83 2lnb_A Z-DNA-binding protein 1 48.9 23 0.00079 27.6 4.6 55 152-215 20-75 (80)
84 1sfu_A 34L protein; protein/Z- 46.4 29 0.00099 26.6 4.7 51 153-210 14-64 (75)
85 1y0u_A Arsenical resistance op 44.7 48 0.0017 24.6 5.8 43 168-217 43-85 (96)
86 1ldd_A APC2WHB, anaphase promo 43.2 15 0.00052 28.0 2.7 60 153-215 10-74 (74)
87 1qbj_A Protein (double-strande 40.2 76 0.0026 23.9 6.3 58 153-217 12-72 (81)
88 1tbx_A ORF F-93, hypothetical 38.4 75 0.0025 23.4 6.0 50 154-209 11-60 (99)
89 2kzv_A Uncharacterized protein 37.8 49 0.0017 25.9 5.0 38 151-188 8-48 (92)
90 1psm_A SPAM-H1; polymorphic an 37.8 0.71 2.4E-05 31.1 -4.8 15 279-293 19-33 (38)
91 1p6r_A Penicillinase repressor 31.0 1.1E+02 0.0038 21.8 5.8 52 152-209 10-61 (82)
92 3jth_A Transcription activator 28.5 1.2E+02 0.0042 22.2 5.8 40 162-209 31-70 (98)
93 1oyi_A Double-stranded RNA-bin 26.5 51 0.0017 25.4 3.2 49 154-210 17-65 (82)
94 1uxc_A FRUR (1-57), fructose r 25.8 35 0.0012 24.6 2.1 39 161-199 4-45 (65)
95 2heo_A Z-DNA binding protein 1 25.1 91 0.0031 22.2 4.3 55 152-215 11-66 (67)
96 2og0_A Excisionase; protein-DN 24.2 49 0.0017 23.4 2.6 39 174-218 5-47 (52)
97 2jt1_A PEFI protein; solution 23.6 1.5E+02 0.005 22.2 5.3 21 191-211 40-60 (77)
98 3cuo_A Uncharacterized HTH-typ 21.2 1.1E+02 0.0036 22.1 4.1 39 164-209 34-72 (99)
99 2x4h_A Hypothetical protein SS 21.0 1.5E+02 0.0052 22.8 5.3 54 154-214 16-70 (139)
100 2v9v_A Selenocysteine-specific 20.9 1.4E+02 0.0046 23.3 4.9 60 152-216 64-130 (135)
No 1
>1uss_A Histone H1; DNA binding protein, linker histone, DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13 PDB: 1yqa_A
Probab=99.87 E-value=2e-22 Score=160.77 Aligned_cols=73 Identities=21% Similarity=0.428 Sum_probs=68.6
Q ss_pred CCCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCC----chhHHHHHHHHHHhhhhcCceeeccc---ccccCCCC
Q 020752 146 KEPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYWA----PANLRKLLATKLKFLSANGTLIKAKH---KYRITPNT 218 (322)
Q Consensus 146 ~~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v----p~nf~~lL~~~LKrlVa~GkLvkvK~---syKi~~~~ 218 (322)
..+||+|.+||+|||.+|+||+|||++||++||+++|++ |++|+.+|+.+||+||++|+|+|+|| +|||+...
T Consensus 4 ~~~hP~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~~~~~~~~~~~~lk~aLK~~v~~G~lvq~KgasGsfkl~~k~ 83 (88)
T 1uss_A 4 SPSSLTYKEMILKSMPQLNDGKGSSRIVLKKYVKDTFSSKLKTSSNFDYLFNSAIKKCVENGELVQPKGPSGIIKLNKKK 83 (88)
T ss_dssp CCSSCCHHHHHHHHHHHSCCTTSBCHHHHHHHHHHHTTTTSCCSSTHHHHHHHHHHHHHHHSSEECSSTTSSCBEECCSC
T ss_pred CCCCCCHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCCcccchHhHHHHHHHHHHHHHHcCCEEeccCCCCceecCccc
Confidence 457999999999999999999999999999999999975 68999999999999999999999999 99998754
No 2
>1hst_A Histone H5; chromosomal protein; 2.60A {Gallus gallus} SCOP: a.4.5.13
Probab=99.87 E-value=1.4e-22 Score=162.56 Aligned_cols=73 Identities=26% Similarity=0.369 Sum_probs=67.3
Q ss_pred CCCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeeccc-----ccccCCCC
Q 020752 146 KEPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAKH-----KYRITPNT 218 (322)
Q Consensus 146 ~~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlVa~GkLvkvK~-----syKi~~~~ 218 (322)
..+||+|.+||+|||.+|+||+|||++||++||+++|+++++|+.+|+.+|++||++|+|+|++| +|||++..
T Consensus 4 ~~~hP~y~~MI~eAI~~lker~GsS~~AI~KyI~~~y~~~~~~~~~l~~aLk~~v~~G~l~q~Kg~GasGsfkl~~~~ 81 (90)
T 1hst_A 4 SASHPTYSEMIAAAIRAEKSRGGSSRQSIQKYIKSHYKVGHNADLQIKLSIRRLLAAGVLKQTKGVGASGSFRLAKSD 81 (90)
T ss_dssp --CCCCHHHHHHHHHHTCCCSSCEEHHHHHHHHHHHSCCCTTHHHHHHHHHHHHHHTTSEEEECCSSCCCEEEECC--
T ss_pred CCCCCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHHccCchhHHHHHHHHHHHHHHcCCeeeecCCCccceeecCCCc
Confidence 45799999999999999999999999999999999999878899999999999999999999998 99998754
No 3
>1uhm_A Histone H1, histone HHO1P; winged helix-turn-helix, linker histone, riken structural genomics/proteomics initiative, RSGI; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=99.87 E-value=1.7e-22 Score=157.52 Aligned_cols=70 Identities=21% Similarity=0.383 Sum_probs=65.7
Q ss_pred CCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCC--c-hhHHHHHHHHHHhhhhcCceeecc---cccccCC
Q 020752 147 EPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYWA--P-ANLRKLLATKLKFLSANGTLIKAK---HKYRITP 216 (322)
Q Consensus 147 ~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v--p-~nf~~lL~~~LKrlVa~GkLvkvK---~syKi~~ 216 (322)
.+||+|.+||+|||.+|+||+|||++||++||+++|++ | ++|+.+|+.+||+||++|+|+|+| |+|||++
T Consensus 2 ~~hP~y~~MI~eAI~~lker~GsS~~AIkKyI~~~y~~~~~~~~~~~~l~~aLk~~v~~G~l~q~KGasgsfkl~~ 77 (78)
T 1uhm_A 2 ASSKSYRELIIEGLTALKERKGSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGDFEQPKGPAGAVKLAK 77 (78)
T ss_dssp CCCCCHHHHHHHHHHHHCCSSCEEHHHHHHHHHTTSCTTTSSSTHHHHHHHHHHHHHHTTSEECCCTTSCEEEESC
T ss_pred CCCCCHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHHHHcCCEEeccCCCcceecCC
Confidence 47999999999999999999999999999999999985 5 899999999999999999999976 5999975
No 4
>1ust_A Histone H1; DNA binding protein, linker histone, DNA binding domain, winged helix fold; NMR {Saccharomyces cerevisiae} SCOP: a.4.5.13
Probab=99.84 E-value=1e-21 Score=158.41 Aligned_cols=73 Identities=21% Similarity=0.377 Sum_probs=67.5
Q ss_pred CCCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCC--c-hhHHHHHHHHHHhhhhcCceeecc---cccccCCCC
Q 020752 146 KEPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYWA--P-ANLRKLLATKLKFLSANGTLIKAK---HKYRITPNT 218 (322)
Q Consensus 146 ~~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v--p-~nf~~lL~~~LKrlVa~GkLvkvK---~syKi~~~~ 218 (322)
..+||+|.+||+|||.+|+||+|||++||++||+++|++ + ++|+.+|+.+|++||++|+|+|++ |+|||+...
T Consensus 4 ~~~hP~y~~MI~eAI~alker~GsS~~AIkKyI~~~y~~~~~~~~~~~~lk~aLK~~v~~G~lvq~KGasgsfKL~~k~ 82 (93)
T 1ust_A 4 EASSKSYRELIIEGLTALKERKGSSRPALKKFIKENYPIVGSASNFDLYFNNAIKKGVEAGDFEQPKGPAGAVKLAKKK 82 (93)
T ss_dssp SSCCCCHHHHHHHHHTTTTTTSCEEHHHHHHHHHHHCHHHHTSTTHHHHHHHHHHHHHHTTSEECTTCTTSEEEECSCC
T ss_pred CCCCCCHHHHHHHHHHHcccCCCcCHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHHHHcCCEEeccCCCceeeCCCCC
Confidence 457999999999999999999999999999999999985 5 899999999999999999999976 699998743
No 5
>2rqp_A Heterochromatin protein 1-binding protein 3; histone H1, alternative splicing, chromosomal protein, DNA-binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=99.83 E-value=6.5e-22 Score=157.47 Aligned_cols=72 Identities=22% Similarity=0.313 Sum_probs=67.8
Q ss_pred CCCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCC-C-chhHHHHHHHHHHhhhhcCceeeccc-----ccccCCC
Q 020752 146 KEPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYW-A-PANLRKLLATKLKFLSANGTLIKAKH-----KYRITPN 217 (322)
Q Consensus 146 ~~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~-v-p~nf~~lL~~~LKrlVa~GkLvkvK~-----syKi~~~ 217 (322)
..+||+|.+||+|||.+|+||+|||++||++||+++|+ + +++|+.+|+.+||++|++|+|+|++| +|||++.
T Consensus 6 ~~~hp~y~~MI~eAI~~Lker~GsS~~AI~KyI~~~y~~~~~~~~~~~lk~aLk~~v~~G~l~q~Kg~GasGsfkl~~~ 84 (88)
T 2rqp_A 6 SSPRPKMDAILTEAIKACFQKSGASVVAIRKYIIHKYPSLELERRGYLLKQALKRELNRGVIKQVKGKGASGSFVVVQK 84 (88)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHCSTHHHHTTTTTHHHHHHHHHHHHTTCCSSCSSTTTSSCCTTT
T ss_pred CCCCCCHHHHHHHHHHHhccCCCcCHHHHHHHHHHhCCCCChhhHHHHHHHHHHHHHhcCcEEeecCCCCcceeecccc
Confidence 45899999999999999999999999999999999998 3 57899999999999999999999998 9999875
No 6
>1ghc_A GH1; chromosomal protein; NMR {Gallus gallus} SCOP: a.4.5.13
Probab=99.78 E-value=1.3e-20 Score=145.16 Aligned_cols=67 Identities=25% Similarity=0.349 Sum_probs=62.8
Q ss_pred CCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhh-CCCchhHHHHHHHHHHhhhhcCceeeccc-----ccccC
Q 020752 148 PVARLDKLILEAISNLKEPNGSDRASIASYIEDQ-YWAPANLRKLLATKLKFLSANGTLIKAKH-----KYRIT 215 (322)
Q Consensus 148 ~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~-y~vp~nf~~lL~~~LKrlVa~GkLvkvK~-----syKi~ 215 (322)
+||+|.+||+|||.+|+||+|||++||++||+++ |.++ +++.+|+.+||+||++|+|+|++| +|||+
T Consensus 2 ~hP~y~~mI~~AI~alker~GsS~~AI~Kyi~~~~~~~~-~~~~~l~~aLk~~v~~G~l~~~kg~gasGsfkl~ 74 (75)
T 1ghc_A 2 AGPSVTELITKAVSASKERKGLSLAALKKALAAGGYDVE-KNNSRIKLGLKSLVSKGTLVQTKGTGASGSFRLS 74 (75)
T ss_dssp CSSSHHHHHHHHHHHCSSSSCCTTSSGGGSSSSSSCCSS-SSHHHHHHHTTTHHHHTSSCCCCCSTTSCCCCSC
T ss_pred CCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHccCCch-hHHHHHHHHHHHHHhcCCeEeccCCCCccccccC
Confidence 6999999999999999999999999999999999 5554 679999999999999999999998 99986
No 7
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.76 E-value=5.1e-19 Score=133.24 Aligned_cols=55 Identities=29% Similarity=0.462 Sum_probs=50.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhccccc
Q 020752 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (322)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (322)
+.|++||+||++.|++||++||. +|++|+.+|.| |.+||+||||||||||.+...
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f---~~~RT~VdLKdk~r~L~k~~~ 60 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPF---QKGRRAVDLAHKYHRLISGPS 60 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCC---CTTCCHHHHHHHHHHHHTCSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCC---ccCcccchHHHHHHHHHhccc
Confidence 57899999999999999999999 99999997755 789999999999999998754
No 8
>2lso_A Histone H1X; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, nuclear protein; NMR {Homo sapiens}
Probab=99.62 E-value=5.3e-20 Score=145.46 Aligned_cols=70 Identities=29% Similarity=0.431 Sum_probs=65.1
Q ss_pred CCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCC-CchhHHHHHHHHHHhhhhcCceeeccc-----ccccCCCC
Q 020752 149 VARLDKLILEAISNLKEPNGSDRASIASYIEDQYW-APANLRKLLATKLKFLSANGTLIKAKH-----KYRITPNT 218 (322)
Q Consensus 149 hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~-vp~nf~~lL~~~LKrlVa~GkLvkvK~-----syKi~~~~ 218 (322)
+++|.+||+|||.+|+||+|||++||++||+++|+ .+++|+.+|+.+||++|++|+|+|+|| ||||++..
T Consensus 5 ~~~y~~MI~eAI~aLker~GSS~~AI~K~i~~~~~~~~~~~~~~lk~aLK~~v~~G~Lvq~Kg~GasGsfKl~~k~ 80 (83)
T 2lso_A 5 PGKYSQLVVETIRRLGERNGSSLAKIYTEAKKVPWFDQQNGRTYLKYSIKALVQNDTLLQVKGTGANGSFKLNRKK 80 (83)
Confidence 47899999999999999999999999999999985 678999999999999999999999998 99998743
No 9
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.73 E-value=2.9e-18 Score=141.19 Aligned_cols=61 Identities=34% Similarity=0.535 Sum_probs=54.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhcccccccc
Q 020752 2 GAPKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAIWGS 64 (322)
Q Consensus 2 g~~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~~~g~ 64 (322)
++++++||+|||++|++||++||.|+|+.|++.+ | ++|.+||++|||||||||++.....+
T Consensus 10 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~-~-~~f~~RT~v~lKdrWrnllk~~~~~p 70 (105)
T 2aje_A 10 RRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCA-F-EDADHRTYVDLKDKWKTLVHTAKISP 70 (105)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSS-S-SSTTCCCHHHHHHHHHHHHHTTTCCT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHh-c-cccCCCCHHHHHHHHHHHHhhccCCc
Confidence 5789999999999999999999999999999964 3 36799999999999999999876433
No 10
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.70 E-value=7.5e-18 Score=142.07 Aligned_cols=60 Identities=35% Similarity=0.581 Sum_probs=53.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhccccccc
Q 020752 2 GAPKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAIWG 63 (322)
Q Consensus 2 g~~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~~~g 63 (322)
++++++||.|||+.|++||++||.|+|+.|++.+ | ++|.+||++|||||||||++.....
T Consensus 28 rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~-~-~~~~~RT~vdlKdRWrnllk~~~~~ 87 (122)
T 2roh_A 28 RRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRA-F-ENVHHRTYVDLKDKWKTLVHTASIA 87 (122)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHH-H-SSSCCCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHh-c-cccCCCCHHHHHHHHHHHHhhccCC
Confidence 5789999999999999999999999999999953 3 3579999999999999999876533
No 11
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.69 E-value=9.2e-18 Score=132.82 Aligned_cols=57 Identities=35% Similarity=0.594 Sum_probs=50.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhcccccccc
Q 020752 6 QKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAIWGS 64 (322)
Q Consensus 6 ~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~~~g~ 64 (322)
++||+|||+.|++||++||.|+|+.|++++ | .+|.+||++|||||||||++.....+
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~-~-~~~~~RT~~~lKdrWrnllk~~~~~p 57 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRA-F-DNADHRTYVDLKDKWKTLVHTASIAP 57 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHH-C-TTCTTSCHHHHHHHHHHHHHHHHSCG
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhh-c-cccCCCCHHHHHHHHHHHHHhccCCc
Confidence 589999999999999999999999999964 2 35799999999999999998765433
No 12
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.68 E-value=9.7e-18 Score=141.23 Aligned_cols=58 Identities=33% Similarity=0.494 Sum_probs=52.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhccccc
Q 020752 2 GAPKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (322)
Q Consensus 2 g~~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (322)
++++++||.|||+.|++||++||.|+|+.|+.++.| +|.+||++|||||||||++...
T Consensus 14 rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~--~f~~RT~v~lKdRWrnllk~~~ 71 (121)
T 2juh_A 14 RRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFD--NADHRTYVDLKDKWKTLVHTAS 71 (121)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCS--CCSSCCSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcc--ccCCCCHHHHHHHHHHHHhhhc
Confidence 578999999999999999999999999999997654 5799999999999999998654
No 13
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.66 E-value=4.8e-17 Score=122.50 Aligned_cols=54 Identities=41% Similarity=0.733 Sum_probs=48.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhcccc
Q 020752 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (322)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (322)
.+|++||+|||+.|+++|++||.|+|+.|++.+. |.+||++||+|||+||.+..
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~----~~~Rt~~qcr~Rw~nl~k~g 62 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYP----FVNRTAVMIKDRWRTMKRLG 62 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC----CSSCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcC----CCCCCHHHHHHHHHHHhccC
Confidence 4688999999999999999999999999998543 46999999999999999875
No 14
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.58 E-value=1.6e-15 Score=109.22 Aligned_cols=52 Identities=40% Similarity=0.845 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhccc
Q 020752 4 PKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVT 59 (322)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (322)
+|++||+|||+.|+.+|.+||.|+|..|... |. |.+||.+||++||+|+++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~--~~--~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLH--YK--FNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHH--SC--CSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHH--cC--CCCCCHHHHHHHHHHHHcc
Confidence 4789999999999999999999999999983 21 2389999999999999874
No 15
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.54 E-value=4.9e-15 Score=112.04 Aligned_cols=56 Identities=38% Similarity=0.798 Sum_probs=49.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhccccc
Q 020752 2 GAPKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (322)
Q Consensus 2 g~~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (322)
++++++||+|||+.|+.+|++||.|+|..|+.. |. |.+||.+||++||+|++++..
T Consensus 7 ~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~--~~--~~~Rt~~qcr~Rw~~~l~p~i 62 (69)
T 1ity_A 7 ARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLH--YK--FNNRTSVMLKDRWRTMKKLKL 62 (69)
T ss_dssp SSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHH--SC--CSSCCHHHHHHHHHHHHHTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHH--cC--cCCCCHHHHHHHHHHHcCCCC
Confidence 467899999999999999999999999999983 21 239999999999999998876
No 16
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.45 E-value=9e-14 Score=99.32 Aligned_cols=50 Identities=32% Similarity=0.684 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhccc
Q 020752 4 PKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVT 59 (322)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (322)
.+.+||+|||+.|+++|.+||.++|..|.. .|.+||..||++||++++.+
T Consensus 2 ~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~------~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 2 GKTRWTREEDEKLKKLVEQNGTDDWKVIAN------YLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCSSCHHHHHH------TSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHH------HcCCCCHHHHHHHHHHHcCc
Confidence 478999999999999999999999999998 35799999999999998865
No 17
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.44 E-value=1.2e-13 Score=101.52 Aligned_cols=54 Identities=28% Similarity=0.527 Sum_probs=49.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhccccc
Q 020752 2 GAPKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (322)
Q Consensus 2 g~~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (322)
+..+.+||+|||+.|+++|.+||.++|..|.. +|.+||..||++||.+++.+..
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~------~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQDWKFLAS------HFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHH------HCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHH------HccCCCHHHHHHHHHHHcCCcc
Confidence 35788999999999999999999999999998 3679999999999999988764
No 18
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.41 E-value=2.6e-13 Score=97.04 Aligned_cols=50 Identities=30% Similarity=0.506 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhccc
Q 020752 4 PKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVT 59 (322)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (322)
.+.+||+|||+.|+++|.+||.++|..|.. .|.+||..+|++||.|++.+
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~------~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAK------HLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHT------TSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHH------HcCCCCHHHHHHHHHHHcCc
Confidence 578999999999999999999999999998 35799999999999998865
No 19
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1e-12 Score=99.43 Aligned_cols=54 Identities=31% Similarity=0.538 Sum_probs=48.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhccccc
Q 020752 2 GAPKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (322)
Q Consensus 2 g~~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (322)
+.++++||+|||+.|+.+|.+||.++|..|.. .|.+||..||++||.|++.+..
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~------~l~~Rt~~qcr~Rw~~~L~p~i 59 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGKNQWSRIAS------LLHRKSAKQCKARWYEWLDPSI 59 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHH------HSTTCCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHH------HhcCCCHHHHHHHHHHHcCCcc
Confidence 35688999999999999999999999999998 3579999999999999988754
No 20
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.34 E-value=1.2e-12 Score=96.64 Aligned_cols=54 Identities=20% Similarity=0.415 Sum_probs=48.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhccccc
Q 020752 2 GAPKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (322)
Q Consensus 2 g~~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (322)
...+.+||+|||+.|+++|++||.++|..|.+ .|.+||..||++||.+++....
T Consensus 5 ~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~------~~~~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 5 SSGDPSWTAQEEMALLEAVMDCGFGNWQDVAN------QMCTKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHH------HHTTSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHH------HhCCCCHHHHHHHHHHHccCCC
Confidence 35688999999999999999999999999998 3579999999999999887643
No 21
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.28 E-value=2.8e-12 Score=94.23 Aligned_cols=48 Identities=23% Similarity=0.475 Sum_probs=43.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccC-CCCHHhHHHHHHHhc
Q 020752 4 PKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILH-SRSNVDLKDKWRNIN 57 (322)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~-~RT~vdLKDKWRnl~ 57 (322)
.+.+||+|||+.|+++|++||.++|..|.+ .+. +||..||++||.++.
T Consensus 8 ~~~~WT~eED~~L~~~v~~~G~~~W~~IA~------~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 8 FDENWGADEELLLIDACETLGLGNWADIAD------YVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCCHHHHHHHHHHHHHTTTTCHHHHHH------HHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHH------HHCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999999999998 357 899999999999874
No 22
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.18 E-value=1.8e-11 Score=94.59 Aligned_cols=50 Identities=38% Similarity=0.456 Sum_probs=45.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhcccc
Q 020752 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (322)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (322)
..+.+||+|||+.|+++|.+||. +|+.|.+ .| +||..+||+||+.|.+..
T Consensus 21 i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~------~l-gRt~~q~knRw~~L~~~~ 70 (73)
T 2llk_A 21 NHVGKYTPEEIEKLKELRIKHGN-DWATIGA------AL-GRSASSVKDRCRLMKDTC 70 (73)
T ss_dssp CCCCSSCHHHHHHHHHHHHHHSS-CHHHHHH------HH-TSCHHHHHHHHHHCSCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCC-CHHHHHH------Hh-CCCHHHHHHHHHHHHHHc
Confidence 46889999999999999999999 6999998 47 999999999999887653
No 23
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.15 E-value=5.2e-11 Score=95.73 Aligned_cols=52 Identities=27% Similarity=0.465 Sum_probs=47.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhcccc
Q 020752 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (322)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (322)
-.+++||+|||+.|+.+|++||.++|..|.. +|++||..+|++||++++.+.
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~------~l~~Rt~~qcr~Rw~~~l~p~ 53 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK------HLKGRIGKQCRERWHNHLNPE 53 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHT------TSTTCCHHHHHHHHHHTTCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhh------hhcCCCHHHHHHHHHhccCCc
Confidence 4688999999999999999999999999998 368999999999999987654
No 24
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.14 E-value=3.1e-11 Score=91.88 Aligned_cols=52 Identities=27% Similarity=0.497 Sum_probs=46.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhccccc
Q 020752 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (322)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (322)
..+.+||+|||+.|+++|.+||. +|..|.. +|.+||..+|+++|.++.+...
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~------~~~~Rt~~q~k~r~~~~l~~~~ 58 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR-RWTKISK------LIGSRTVLQVKSYARQYFKNKV 58 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS-CHHHHHH------HHSSSCHHHHHHHHHHHHHHHS
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-CHHHHHH------HcCCCCHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999 9999998 4689999999999999877643
No 25
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.12 E-value=5.7e-11 Score=96.32 Aligned_cols=51 Identities=27% Similarity=0.496 Sum_probs=46.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhccccc
Q 020752 5 KQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (322)
Q Consensus 5 r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (322)
|++||+|||+.|+.+|.+||.++|..|.. .|.+||..||++||.|.+.+..
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~------~~~~Rt~~qcr~Rw~~~L~p~i 51 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQ------LMITRNPRQCRERWNNYINPAL 51 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHH------HTTTSCHHHHHHHHHHHSSSCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhh------hcCCCCHHHHHHHHHHHHcccc
Confidence 57999999999999999999999999997 4679999999999999887643
No 26
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=4.3e-11 Score=91.46 Aligned_cols=52 Identities=21% Similarity=0.343 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-----CCchhhccCcccccccCCCCHHhHHHHHHHhcccc
Q 020752 3 APKQKWTAEEEAALKAGVRKHGT-----GKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (322)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~k~G~-----GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (322)
..+.+||+|||+.|+++|.+||. ++|..|.. +|.+||..||++||.+++...
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~------~~~~Rt~~qcr~r~~~~l~~~ 62 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIAD------ELGNRTAKQVASQVQKYFIKL 62 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHH------HHSSSCHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHH------HhCCCCHHHHHHHHHHHHHHH
Confidence 45789999999999999999996 79999998 467999999999998887664
No 27
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.10 E-value=1.1e-10 Score=97.87 Aligned_cols=51 Identities=27% Similarity=0.497 Sum_probs=46.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhccccc
Q 020752 5 KQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (322)
Q Consensus 5 r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (322)
|++||+|||+.|+.+|.+||.++|..|.. .|.+||..||++||+|.+.+..
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~------~~~~Rt~~qcr~Rw~~~l~p~~ 52 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITS------FLPNRSPKQCRERWFNHLDPAV 52 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTT------SCTTSCHHHHHHHHHHHTSTTC
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHH------HHCCCCHHHHHHHHhhccCccc
Confidence 68999999999999999999999999997 3679999999999999887643
No 28
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.08 E-value=1.2e-10 Score=97.06 Aligned_cols=53 Identities=36% Similarity=0.689 Sum_probs=47.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhccccc
Q 020752 2 GAPKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (322)
Q Consensus 2 g~~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (322)
+.++++||+|||+.|+.+|.+||. +|..|.. .|.+||..+|++||+|.+.+..
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~------~~~~Rt~~qcr~Rw~~~l~p~~ 60 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAA------TFPNRNARQCRDRWKNYLAPSI 60 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHH------TCTTCCHHHHHHHHHHHTSTTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHH------HcCCCCHHHHHHHHhhhccccc
Confidence 457899999999999999999999 9999997 3579999999999999876543
No 29
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=6.6e-11 Score=88.45 Aligned_cols=51 Identities=25% Similarity=0.385 Sum_probs=46.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhccccc
Q 020752 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (322)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (322)
..+.+||.|||+.|+.+|++||. +|..|.. | .+||..+|++||.+++.+..
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~---~----~gRt~~qcr~Rw~~~l~~~~ 57 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLMPT-QWRTIAP---I----IGRTAAQCLEHYEFLLDKAA 57 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH---H----HSSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc---c----cCcCHHHHHHHHHHHhChHh
Confidence 46789999999999999999999 9999997 2 48999999999999988754
No 30
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.07 E-value=1.5e-10 Score=96.30 Aligned_cols=53 Identities=26% Similarity=0.508 Sum_probs=47.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhccccc
Q 020752 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (322)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (322)
..+++||+|||+.|+.+|++||.++|..|.. +|++||..+|++||.+++.+..
T Consensus 25 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~------~l~~Rt~~qcr~Rw~~~l~p~~ 77 (128)
T 1h8a_C 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAK------HLKGRIGKQCRERWHNHLNPEV 77 (128)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHH------HSSSCCHHHHHHHHHHTTCSSS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHH------HhcCCcHHHHHHHHHHhccccc
Confidence 4678999999999999999999999999997 4689999999999999877643
No 31
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.03 E-value=1.4e-10 Score=90.68 Aligned_cols=47 Identities=15% Similarity=0.295 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhc
Q 020752 4 PKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNIN 57 (322)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~ 57 (322)
.+.+||+|||..|+++|++|| ++|..|.+ ++.+||..||+++|.++.
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~------~v~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK-DDWNKVSE------HVGSRTQDECILHFLRLP 63 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS-SCHHHHHH------HHSSCCHHHHHHHHTTSC
T ss_pred cCCCcCHHHHHHHHHHHHHhC-CCHHHHHH------HcCCCCHHHHHHHHHHhc
Confidence 368999999999999999999 89999998 357999999999999883
No 32
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.00 E-value=4.5e-10 Score=90.25 Aligned_cols=50 Identities=24% Similarity=0.587 Sum_probs=45.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhccc
Q 020752 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVT 59 (322)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (322)
..+.+||+|||+.|+.+|.+||. +|..|.+ +|++||..+|++||+++.+.
T Consensus 54 ~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~------~l~gRt~~~~k~rw~~~~~~ 103 (105)
T 1gv2_A 54 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK------LLPGRTDNAIKNHWNSTMRR 103 (105)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHSS-CHHHHHT------TCTTCCHHHHHHHHHHHTC-
T ss_pred ccccCCCHHHHHHHHHHHHHhCC-CHHHHHH------HcCCCCHHHHHHHHHHHHhc
Confidence 35789999999999999999997 9999997 36899999999999998765
No 33
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.97 E-value=5.5e-10 Score=93.52 Aligned_cols=56 Identities=27% Similarity=0.535 Sum_probs=49.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhccccc-ccch
Q 020752 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI-WGSR 65 (322)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~~-~g~~ 65 (322)
..+++||+|||+.|+.+|.+||. +|+.|.. +|.+||..+|++||+++++... .++.
T Consensus 52 ~~~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~------~l~gRt~~~~k~rw~~~l~~~~~~~~~ 108 (131)
T 3zqc_A 52 VVKHAWTPEEDETIFRNYLKLGS-KWSVIAK------LIPGRTDNAIKNRWNSSISKRISTNSN 108 (131)
T ss_dssp CCCSCCCHHHHHHHHHHHHHSCS-CHHHHTT------TSTTCCHHHHHHHHHHTTGGGCCCCTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH------HcCCCCHHHHHHHHHHHHHHHhhcCCC
Confidence 45789999999999999999997 9999997 3689999999999999988876 4443
No 34
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.96 E-value=5.8e-10 Score=92.93 Aligned_cols=52 Identities=27% Similarity=0.597 Sum_probs=46.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhccccc
Q 020752 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (322)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (322)
..+.+||+|||+.|+.+|.+||. +|..|.. +|++||..+|++||+++.+...
T Consensus 60 ~~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~------~l~gRt~~~~k~rw~~l~~k~~ 111 (126)
T 3osg_A 60 ISHTPWTAEEDALLVQKIQEYGR-QWAIIAK------FFPGRTDIHIKNRWVTISNKLG 111 (126)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHHT------TSTTCCHHHHHHHHHHHHHHTT
T ss_pred cccccCCHHHHHHHHHHHHHHCc-CHHHHHH------HcCCCCHHHHHHHHHHHHHhcC
Confidence 45789999999999999999997 9999997 3689999999999999987754
No 35
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.95 E-value=5.8e-10 Score=90.39 Aligned_cols=51 Identities=25% Similarity=0.565 Sum_probs=46.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhcccc
Q 020752 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (322)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (322)
..+.+||+|||+.|+.+|.+||. +|..|.+ +|++||..+|++||+++.+..
T Consensus 51 i~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~------~l~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 51 LRTDPWSPEEDMLLDQKYAEYGP-KWNKISK------FLKNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp CTTCCCCHHHHHHHHHHHHHTCS-CHHHHHH------HHSSSCHHHHHHHHHHHHHHH
T ss_pred ccccccCHHHHHHHHHHHHHhCc-CHHHHHH------HCCCCCHHHHHHHHHHHHhhH
Confidence 35789999999999999999998 9999997 468999999999999998763
No 36
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.93 E-value=7.7e-10 Score=85.42 Aligned_cols=52 Identities=15% Similarity=0.328 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CCchhhccCcccccccCCCCHHhHHHHHHHhccccc
Q 020752 4 PKQKWTAEEEAALKAGVRKHGT---GKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (322)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~k~G~---GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (322)
.+.+||.||+..|+.+|.+||. .+|..|.. +|++||..+|++||.+|+....
T Consensus 17 ~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~------~vpGRT~~qcr~Ry~~L~~d~~ 71 (73)
T 2cqr_A 17 AEEPWTQNQQKLLELALQQYPRGSSDCWDKIAR------CVPSKSKEDCIARYKLLVSGPS 71 (73)
T ss_dssp SSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGG------GCSSSCHHHHHHHHHHHHSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH------HcCCCCHHHHHHHHHHHHHccc
Confidence 4578999999999999999993 59999998 4689999999999999987654
No 37
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.91 E-value=1.4e-09 Score=90.43 Aligned_cols=50 Identities=24% Similarity=0.580 Sum_probs=45.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhccc
Q 020752 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVT 59 (322)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (322)
..+.+||+|||+.|+.+|.+||. +|..|.+ +|++||..+|++||+++.+.
T Consensus 77 ~~~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~------~l~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 77 VKKTSWTEEEDRIIYQAHKRLGN-RWAEIAK------LLPGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp SCCSCCCHHHHHHHHHHHHHHCS-CHHHHGG------GSTTCCHHHHHHHHHTTTTC
T ss_pred cccccCCHHHHHHHHHHHHHHCc-CHHHHHH------HCCCCCHHHHHHHHHHHHhc
Confidence 35789999999999999999998 9999997 46899999999999998765
No 38
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.87 E-value=2.5e-09 Score=91.83 Aligned_cols=52 Identities=27% Similarity=0.465 Sum_probs=46.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhcccc
Q 020752 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (322)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (322)
..+.+||+|||+.|+.+|.+||.++|..|.. +|++||..+|++||.+++.+.
T Consensus 56 ~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~------~l~~Rt~~qcr~Rw~~~l~p~ 107 (159)
T 1h89_C 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAK------HLKGRIGKQCRERWHNHLNPE 107 (159)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCSCCHHHHHH------TSTTCCHHHHHHHHHHTTCTT
T ss_pred cCCCCCChHHHHHHHHHHHHhCcccHHHHHH------HcCCCCHHHHHHHHHHHhCcc
Confidence 3578999999999999999999989999997 368999999999999987654
No 39
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.37 E-value=2.6e-10 Score=90.58 Aligned_cols=52 Identities=27% Similarity=0.411 Sum_probs=46.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhccccc
Q 020752 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (322)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (322)
-.+.+||+|||+.|+.+|.+||. +|..|.. +|.+||..+|+++|.++.+...
T Consensus 14 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~------~l~gRt~~q~k~r~~~~lrk~~ 65 (89)
T 2ltp_A 14 LYFQGWTEEEMGTAKKGLLEHGR-NWSAIAR------MVGSKTVSQCKNFYFNYKKRQN 65 (89)
Confidence 35789999999999999999999 9999998 4689999999999999887654
No 40
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.86 E-value=4.4e-10 Score=96.62 Aligned_cols=53 Identities=30% Similarity=0.655 Sum_probs=11.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhccccc
Q 020752 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (322)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (322)
-.+++||+|||+.|+.+|++||.++|..|.. .|++||..||++||++++.+..
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~------~l~~Rt~~qcr~Rw~~~l~p~~ 56 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIAN------YLPNRTDVQCQHRWQKVLNPEL 56 (159)
T ss_dssp ---------------------------------------------CHHHHHHTTTCTTC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHH------HcCCCCHHHHHHHHHHccCCCc
Confidence 3567899999999999999999999999997 3579999999999999887643
No 41
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.61 E-value=2.9e-08 Score=79.92 Aligned_cols=50 Identities=14% Similarity=0.399 Sum_probs=44.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhC---CCCchhhccCcccccccCCCCHHhHHHHHHHhccc
Q 020752 4 PKQKWTAEEEAALKAGVRKHG---TGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVT 59 (322)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~k~G---~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (322)
.+..||.||+..|+.++.+|| ..+|..|+. .|+|||..+|+.+|.+|...
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~------~vpGRT~~q~k~ry~~l~~d 59 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVAR------AVEGRTPEEVKKHYEILVED 59 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHH------HSTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH------HcCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999998 457999998 46899999999999999765
No 42
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.53 E-value=6.3e-08 Score=89.86 Aligned_cols=52 Identities=19% Similarity=0.304 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCC-----chhhccCcccccccCCCCHHhHHHHHHHhccccc
Q 020752 4 PKQKWTAEEEAALKAGVRKHGTGK-----WRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (322)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~k~G~Gk-----W~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (322)
.+.+||+|||+.|++.|++||..+ |..|.+ +|+|||..+||+||++.++...
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk------~LpGRT~nsIRnRw~~~L~~~l 63 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH------YVPNHTGNSIRHRFRVYLSKRL 63 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT------TSTTSCHHHHHHHHHHTTGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHH------HcCCCCHHHHHHHHHHHHhhhc
Confidence 577999999999999999999853 999998 4789999999999999887765
No 43
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=5.3e-07 Score=66.62 Aligned_cols=49 Identities=20% Similarity=0.188 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhccc
Q 020752 4 PKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVT 59 (322)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (322)
...+||+||++.+.+++.+||. +|..|.. +|.+||..||...|....+.
T Consensus 11 ~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~------~l~~rt~~~~v~~Yy~~Kk~ 59 (61)
T 2eqr_A 11 FMNVWTDHEKEIFKDKFIQHPK-NFGLIAS------YLERKSVPDCVLYYYLTKKN 59 (61)
T ss_dssp CCCSCCHHHHHHHHHHHHHSTT-CHHHHHH------HCTTSCHHHHHHHHHHHTCC
T ss_pred cCCCCCHHHHHHHHHHHHHhCC-CHHHHHH------HcCCCCHHHHHHHHHHhcCC
Confidence 4578999999999999999997 9999986 47899999999999876654
No 44
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.18 E-value=1.4e-06 Score=66.91 Aligned_cols=51 Identities=25% Similarity=0.459 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC---CCchhhccCcccccccCCCCHHhHHHHHHHhcccc
Q 020752 3 APKQKWTAEEEAALKAGVRKHGT---GKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (322)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~k~G~---GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (322)
.....||.||+..|..+|.+|+. .+|..|.. ++ +||..||+.+|..|....
T Consensus 6 ~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~------~l-gRt~~eV~~~y~~L~~d~ 59 (72)
T 2cqq_A 6 SGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAH------EL-GRSVTDVTTKAKQLKDSV 59 (72)
T ss_dssp CCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHH------HH-TSCHHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH------Hh-CCCHHHHHHHHHHHHHhc
Confidence 34678999999999999999995 47999998 23 899999999999997663
No 45
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.91 E-value=8.9e-06 Score=65.58 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhcccc
Q 020752 6 QKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (322)
Q Consensus 6 ~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (322)
.+||.||++.|.+.+++||. +|..|..-+.+.. +.+||-.|||+||..+++..
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~-~~~Rt~EdLK~RyY~v~~~l 83 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQ-FKKRSVEDLKERYYHICAKL 83 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTT-SCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCC-CCCCCHHHHHHHHHHHHHHH
Confidence 58999999999999999999 9999998443321 35899999999998887754
No 46
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.78 E-value=2.1e-05 Score=72.52 Aligned_cols=52 Identities=23% Similarity=0.378 Sum_probs=46.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhccccc
Q 020752 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (322)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (322)
+...+||+||.+.+++++.+||. +|..|.+ ++.+||..+|+..|.+..+..+
T Consensus 131 k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk------~VgTKT~~QcKnfY~~~kKRln 182 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYGR-DFQAISD------VIGNKSVVQVKNFFVNYRRRFN 182 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSS-CHHHHHH------HHSSCCHHHHHHHHHHTTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH------HcCCCCHHHHHHHHHHHHHHhh
Confidence 34568999999999999999998 9999998 4689999999999998887754
No 47
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=97.74 E-value=3.8e-05 Score=68.03 Aligned_cols=55 Identities=24% Similarity=0.442 Sum_probs=44.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCchhhccCcccc--c-c-----cCCCCHHhHHHHHHHhccc
Q 020752 5 KQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFS--A-I-----LHSRSNVDLKDKWRNINVT 59 (322)
Q Consensus 5 r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~--~-~-----l~~RT~vdLKDKWRnl~k~ 59 (322)
...||.+||..|+.||.+||-|+|..|..||.++ + + ...++.+.|..|-..|++.
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~ 196 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL 196 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence 3469999999999999999999999999999843 2 1 2467788999996655553
No 48
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.66 E-value=4.2e-05 Score=59.14 Aligned_cols=49 Identities=18% Similarity=0.331 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHHHhCC---CCchhhccCcccccccCCCCHHhHHHHHHHhcccc
Q 020752 6 QKWTAEEEAALKAGVRKHGT---GKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (322)
Q Consensus 6 ~~WT~EEe~~L~~GV~k~G~---GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (322)
..||.+|+.+|..++..|+. +.|..|.. .+.+||..+|+.+|..|.+..
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~------~V~gKT~eE~~~hY~~l~~~~ 60 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAA------AVGSRSPEECQRKYMENPRGK 60 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHH------HTTTSCHHHHHHHHHHSSSSS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHH------HcCCCCHHHHHHHHHHHHhcc
Confidence 57999999999999999986 68999998 467999999999999996653
No 49
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=97.33 E-value=0.00019 Score=52.89 Aligned_cols=49 Identities=20% Similarity=0.366 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCchhhccCcccccccCCCCHHhHHHHHHHhcc
Q 020752 5 KQKWTAEEEAALKAGVRKH--------GTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINV 58 (322)
Q Consensus 5 r~~WT~EEe~~L~~GV~k~--------G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k 58 (322)
|.+||.|||..|++-|.+| |.--|+.|.+. .++++|-..++|||++-++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~-----~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKS-----SLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHS-----CSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHh-----HCCCCCHHHHHHHHHHHcc
Confidence 7899999999999999999 76789999871 2579999999999987553
No 50
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=97.23 E-value=0.00015 Score=68.29 Aligned_cols=32 Identities=44% Similarity=0.771 Sum_probs=30.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchhhccCcccc
Q 020752 7 KWTAEEEAALKAGVRKHGTGKWRTILSDPEFS 38 (322)
Q Consensus 7 ~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~ 38 (322)
.|+.+||..|+.||-+||.|+|..|..||.+.
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~Dp~L~ 201 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRDDPFLG 201 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHCTTTC
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhcCcccC
Confidence 39999999999999999999999999999764
No 51
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.13 E-value=0.00016 Score=56.05 Aligned_cols=54 Identities=26% Similarity=0.355 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC----C-----CchhhccCcccccccCCCCHHhHHHHHHHhccc
Q 020752 4 PKQKWTAEEEAALKAGVRKHGT----G-----KWRTILSDPEFSAILHSRSNVDLKDKWRNINVT 59 (322)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~k~G~----G-----kW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (322)
....||.+|+.+|+.....+-. | .|..|.. .+...=..||..+|++||.||.+.
T Consensus 3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~--~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISS--KMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH--HHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHH--HHHHcCCCCCHHHHHHHHHHHHHH
Confidence 4578999999999999875322 2 7999987 222111379999999999999987
No 52
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=97.10 E-value=0.00047 Score=55.59 Aligned_cols=52 Identities=23% Similarity=0.344 Sum_probs=44.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhccc
Q 020752 6 QKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVT 59 (322)
Q Consensus 6 ~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~ 59 (322)
..||.||+..|.+.+++|+- +|--|..-+.+. -+..||-.|||+||-.+++.
T Consensus 31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~-~~~~RtvEdLK~RYY~V~~~ 82 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQ-QFKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTT-TSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccC-CCCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999 999999855443 24589999999999777655
No 53
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.04 E-value=0.0011 Score=49.25 Aligned_cols=51 Identities=20% Similarity=0.340 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhcccc
Q 020752 4 PKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (322)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (322)
....||+||-+...+|+.+||. +|..|.++ ++.+||..||..-|-...+..
T Consensus 8 ~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~-----~v~~Kt~~~~v~fYY~wKkt~ 58 (63)
T 2yqk_A 8 IEKCWTEDEVKRFVKGLRQYGK-NFFRIRKE-----LLPNKETGELITFYYYWKKTS 58 (63)
T ss_dssp CCCSCCHHHHHHHHHHHHHTCS-CHHHHHHH-----SCTTSCHHHHHHHHHHHHCSS
T ss_pred CCCCcCHHHHHHHHHHHHHhCc-cHHHHHHH-----HcCCCcHHHHHHHHhcccCCC
Confidence 3468999999999999999999 99999872 368999999998876555543
No 54
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=96.76 E-value=0.00095 Score=63.77 Aligned_cols=58 Identities=17% Similarity=0.324 Sum_probs=47.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC---CCchhhcc----Ccc--cccccCCCCHHhHHHHHHHhcccc
Q 020752 3 APKQKWTAEEEAALKAGVRKHGT---GKWRTILS----DPE--FSAILHSRSNVDLKDKWRNINVTA 60 (322)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~k~G~---GkW~~I~~----d~~--f~~~l~~RT~vdLKDKWRnl~k~~ 60 (322)
++.+.||+|||..|+-++.+||. |+|..|.. .|. |.=||..||+.+|..|=..|.+..
T Consensus 210 ~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~i 276 (304)
T 1ofc_X 210 NKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLI 276 (304)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 34568999999999999999999 99999953 333 333458999999999998887653
No 55
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=96.76 E-value=0.0022 Score=48.61 Aligned_cols=53 Identities=19% Similarity=0.317 Sum_probs=44.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhccccc
Q 020752 3 APKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAI 61 (322)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~~ 61 (322)
.....||+||-+...+|+.+||. +|..|..+ ++.+||..||..-|..-.+...
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~-----~v~~Kt~~~~v~fYY~wKkt~~ 58 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGK-DFNDIRQD-----FLPWKSLTSIIEYYYMWKTTDR 58 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHT-----TCSSSCHHHHHHHHHHHHTCCS
T ss_pred cCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHH-----HcCCCCHHHHHHHHHhhcCCch
Confidence 34568999999999999999999 99999973 3689999999998875555543
No 56
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=96.40 E-value=0.003 Score=63.76 Aligned_cols=52 Identities=23% Similarity=0.369 Sum_probs=45.2
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhcccccc
Q 020752 4 PKQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTAIW 62 (322)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~~~ 62 (322)
...+||+||-+.+++||.+||. +|..|.. ++..||..||+.-|.+..+..++
T Consensus 379 ~~~~WT~eE~~~f~~al~~yGk-dw~~IA~------~VgTKT~~Qvk~fy~~~kkr~~l 430 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYGR-DFQAISD------VIGNKSVVQVKNFFVNYRRRFNI 430 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTT-CHHHHHH------HHSSCCHHHHHHHHHHTTTTTTH
T ss_pred cCCCCCHHHHHHHHHHHHHHCc-CHHHHHH------HhCCCCHHHHHHHHHHHHHHhCh
Confidence 3568999999999999999999 9999997 46799999999999877666543
No 57
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=96.14 E-value=0.0017 Score=50.26 Aligned_cols=43 Identities=14% Similarity=0.476 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCC---CchhhccCcccccccCCCCHHhHHHHHH
Q 020752 6 QKWTAEEEAALKAGVRKHGTG---KWRTILSDPEFSAILHSRSNVDLKDKWR 54 (322)
Q Consensus 6 ~~WT~EEe~~L~~GV~k~G~G---kW~~I~~d~~f~~~l~~RT~vdLKDKWR 54 (322)
..||.||+.+|..++.+|+.| .|.+|.. .++|||..+|+..|.
T Consensus 21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~------~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQ------YVKGRTPEEVKKHYE 66 (74)
T ss_dssp -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGG------GSCSSCHHHHHGGGC
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHH------HcCCCCHHHHHHHHH
Confidence 479999999999999999886 8999998 468999999997663
No 58
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=96.00 E-value=0.0097 Score=47.46 Aligned_cols=47 Identities=13% Similarity=0.245 Sum_probs=39.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhcc
Q 020752 5 KQKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNINV 58 (322)
Q Consensus 5 r~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k 58 (322)
...||+||-+.+.+++..||. +|..|.. +|.+||..+|-.=|-...+
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK-~F~~Ia~------~l~~Kt~~~cV~~YY~~Kk 89 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPK-NFGLIAS------FLERKTVAECVLYYYLTKK 89 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTT-CHHHHHH------TCTTCCHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHcCC-CHHHHHH------HcCCCCHHHHHHHHhcccc
Confidence 467999999999999999998 9999965 4789999999876654433
No 59
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=95.71 E-value=0.0078 Score=58.97 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=46.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CCchhhcc----Ccc--cccccCCCCHHhHHHHHHHhccc
Q 020752 4 PKQKWTAEEEAALKAGVRKHGT---GKWRTILS----DPE--FSAILHSRSNVDLKDKWRNINVT 59 (322)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~k~G~---GkW~~I~~----d~~--f~~~l~~RT~vdLKDKWRnl~k~ 59 (322)
+.+.||++||..|+-+|.+||. |+|..|.. .|. |.=||..||+..|..|=..|++.
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~ 291 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQC 291 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 4568999999999999999999 99999854 333 33346899999999999888765
No 60
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=94.35 E-value=0.09 Score=42.07 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=43.5
Q ss_pred CCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCC----CchhHHHHHHHHHHhhhhcCceeec
Q 020752 147 EPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYW----APANLRKLLATKLKFLSANGTLIKA 208 (322)
Q Consensus 147 ~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~----vp~nf~~lL~~~LKrlVa~GkLvkv 208 (322)
++.-+|..||..||..- ..++.+..-|.+||+++|+ .+..++.-|++.|- -++-|++|
T Consensus 3 KPp~SY~~LI~~AI~~s-p~~~ltL~eIY~~i~~~fpyyr~~~~gWkNSIRHNLS---ln~~F~kv 64 (93)
T 2a07_F 3 RPPFTYATLIRQAIMES-SDRQLTLNEIYSWFTRTFAYFRRNAATWKNAVRHNLS---LHKCFVRV 64 (93)
T ss_dssp CCSCCHHHHHHHHHHHS-TTSCBCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---HCTTBCCE
T ss_pred CCCCCHHHHHHHHHHhC-CCCCccHHHHHHHHHHhCCccccCCCccccccceeee---hhhceeec
Confidence 45568999999999975 3457899999999999985 45667777766653 34455555
No 61
>3g73_A Forkhead box protein M1; DNA-binding domain, forkhead transcription factors, FOXM1, W helix; HET: DNA; 2.21A {Homo sapiens}
Probab=94.29 E-value=0.085 Score=45.27 Aligned_cols=73 Identities=21% Similarity=0.271 Sum_probs=51.5
Q ss_pred CCCCCCCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCC-----CchhHHHHHHHHHHhhhhcCceeecc-----c-
Q 020752 142 ASGSKEPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYW-----APANLRKLLATKLKFLSANGTLIKAK-----H- 210 (322)
Q Consensus 142 ~~~~~~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~-----vp~nf~~lL~~~LKrlVa~GkLvkvK-----~- 210 (322)
.+...++.-+|..||..||.... .++.+...|.+||+++|. ....++.-|++.| .-+.-|+++. |
T Consensus 13 ~~~~~KPpySYa~LI~~AI~~sp-~~~LTL~eIY~~I~~~fPyyr~~~~~gWqNSIRHNL---Sln~~F~r~~~~~GKg~ 88 (142)
T 3g73_A 13 NSVSERPPYSYMAMIQFAINSTE-RKRMTLKDIYTWIEDHFPYFKHIAKPGWKNSIRHNL---SLHDMFVRETSANGKVS 88 (142)
T ss_dssp -CTTSCCSSCHHHHHHHHHHTST-TSEECHHHHHHHHHHHCTHHHHTSCTTHHHHHHHHH---HHCTTEEEEECTTSCCE
T ss_pred ccCCCCCCCCHHHHHHHHHHhCC-CCCcCHHHHHHHHHHhCCCccccCCCCccchhhhhh---hhhhhheecCCCCCCCc
Confidence 35556677799999999998844 345899999999999996 3566777776655 3456666653 3
Q ss_pred ccccCCCC
Q 020752 211 KYRITPNT 218 (322)
Q Consensus 211 syKi~~~~ 218 (322)
-+.|.+..
T Consensus 89 ~W~i~p~~ 96 (142)
T 3g73_A 89 FWTIHPSA 96 (142)
T ss_dssp EEEECTTT
T ss_pred eEEECccc
Confidence 35666544
No 62
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=94.15 E-value=0.064 Score=43.16 Aligned_cols=53 Identities=17% Similarity=0.356 Sum_probs=45.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC--CCchhhccCcccccccCCCCHHhHHHHHHHhcccc
Q 020752 2 GAPKQKWTAEEEAALKAGVRKHGT--GKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (322)
Q Consensus 2 g~~r~~WT~EEe~~L~~GV~k~G~--GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (322)
|..-.-||.|||..++...++-|. -.|..|.+ .|.+|+..++++|++.|.+..
T Consensus 30 Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~------~L~Nks~nqV~~RFq~Lm~Lf 84 (95)
T 1ug2_A 30 GEKVVLWTREADRVILTMCQEQGAQPHTFSVISQ------QLGNKTPVEVSHRFRELMQLF 84 (95)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHH------HHSSCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeccccCHHHHHHHHhcCCChhHHHHHHH------HHccCCHHHHHHHHHHHHHHH
Confidence 445567999999999999999988 47888877 467999999999999988764
No 63
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=93.95 E-value=0.11 Score=39.10 Aligned_cols=52 Identities=19% Similarity=0.279 Sum_probs=40.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCC--CchhhccCcccccccCCCCHHhHHHH---HHHhc
Q 020752 2 GAPKQKWTAEEEAALKAGVRKHGTG--KWRTILSDPEFSAILHSRSNVDLKDK---WRNIN 57 (322)
Q Consensus 2 g~~r~~WT~EEe~~L~~GV~k~G~G--kW~~I~~d~~f~~~l~~RT~vdLKDK---WRnl~ 57 (322)
.++|-.||+|.-+..+++|+..|.. .|+.|++ .++ ..+.|..+++.. ||...
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~--~M~--v~gLT~~~VkSHLQKYR~~l 60 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILD--LMN--VDKLTRENVASHLQKFRVAL 60 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHH--HHC--CTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHH--HcC--CCCCCHHHHHHHHHHHHHHH
Confidence 4788999999999999999999953 2789987 232 368899999854 55443
No 64
>2c6y_A Forkhead box protein K2; transcription regulation, DNA-binding domain, forkhead transcription factors, interleukin enhancer binding factor; 2.4A {Homo sapiens} SCOP: a.4.5.14 PDB: 1jxs_A 2a3s_A 2d2w_A
Probab=93.77 E-value=0.13 Score=42.41 Aligned_cols=61 Identities=21% Similarity=0.237 Sum_probs=46.6
Q ss_pred CCCCCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCC----CchhHHHHHHHHHHhhhhcCceeec
Q 020752 144 GSKEPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYW----APANLRKLLATKLKFLSANGTLIKA 208 (322)
Q Consensus 144 ~~~~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~----vp~nf~~lL~~~LKrlVa~GkLvkv 208 (322)
...++.-+|..||..||.... .+..+..-|..||+++|+ .+..++.-|++.|- -+.-|+||
T Consensus 13 ~~~KPp~SYa~LI~~AI~~sp-~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLS---ln~~F~Kv 77 (111)
T 2c6y_A 13 SDSKPPYSYAQLIVQAITMAP-DKQLTLNGIYTHITKNYPYYRTADKGWQNSIRHNLS---LNRYFIKV 77 (111)
T ss_dssp -CCCCSSCHHHHHHHHHHTST-TSCEEHHHHHHHHHHHCTTSCTTCHHHHHHHHHHHH---HSTTEEEE
T ss_pred CCCCCCCCHHHHHHHHHHhCC-CCCCcHHHHHHHHHHcCCccccCCCeeecchhHHhh---hhhhhccc
Confidence 345566789999999999853 456899999999999986 36778877776654 35667776
No 65
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.69 E-value=0.044 Score=48.21 Aligned_cols=50 Identities=18% Similarity=0.252 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhC--CCCchhhccCcccccccCCCCHHhHHHHHHHhc
Q 020752 4 PKQKWTAEEEAALKAGVRKHG--TGKWRTILSDPEFSAILHSRSNVDLKDKWRNIN 57 (322)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~k~G--~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~ 57 (322)
....||..|-..|+.++.+|| .+.|..|..+..| .++|..++++=.+.+.
T Consensus 6 ~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L----~~Ks~~~v~~y~~~f~ 57 (211)
T 4b4c_A 6 NIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAEL----VDKSETDLRRLGELVH 57 (211)
T ss_dssp --CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTC----TTSCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhcc----CCCCHHHHHHHHHHHH
Confidence 457899999999999999999 5899999997654 6899999998655443
No 66
>1vtn_C HNF-3/FORK head DNA-recognition motif; protein-DNA complex, double helix, transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 1d5v_A
Probab=93.40 E-value=0.16 Score=41.12 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=45.1
Q ss_pred CCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCC----CchhHHHHHHHHHHhhhhcCceeec
Q 020752 147 EPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYW----APANLRKLLATKLKFLSANGTLIKA 208 (322)
Q Consensus 147 ~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~----vp~nf~~lL~~~LKrlVa~GkLvkv 208 (322)
++.-+|..||..||... ..++.+..-|.+||+++|+ -+..++.-|+..|-- +.-|++|
T Consensus 3 KPp~SY~~LI~~AI~~s-p~~~LtL~eIY~~I~~~fpyyr~~~~gWqNSIRHNLSl---n~~F~kv 64 (102)
T 1vtn_C 3 KPPYSYISLITMAIQQA-PGKMLTLSEIYQWIMDLFPYYRENQQRWQNSIRHSLSF---NDCFVKV 64 (102)
T ss_dssp CCSSCHHHHHHHHHHTS-TTSCBCHHHHHHHHHHHCGGGGSCHHHHHHHHHHHHHH---CTTEEEE
T ss_pred CcCCCHHHHHHHHHHhC-CCCCCcHHHHHHHHHHcCCccccCCCchhhhhhhhhhh---ccceEec
Confidence 45568999999999975 3456899999999999986 466777777776643 5677776
No 67
>2hfh_A Genesis, HFH-2; HNF-3 homologues, winged helix protein; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=93.01 E-value=0.18 Score=41.40 Aligned_cols=58 Identities=17% Similarity=0.196 Sum_probs=43.9
Q ss_pred CCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCC----CchhHHHHHHHHHHhhhhcCceeec
Q 020752 147 EPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYW----APANLRKLLATKLKFLSANGTLIKA 208 (322)
Q Consensus 147 ~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~----vp~nf~~lL~~~LKrlVa~GkLvkv 208 (322)
++.-+|..||..||..- ..+..+..-|.+||+++|+ -+..++.-|+..|- -+.-|+||
T Consensus 3 KPp~SYa~LI~~AI~~s-p~~~LtL~eIY~~I~~~fPyyr~~~~gWqNSIRHNLS---ln~~F~Kv 64 (109)
T 2hfh_A 3 KPPYSYIALITMAILQS-PQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLS---LNDCFVKI 64 (109)
T ss_dssp CCCCCHHHHHHHHHHTC-SSSCBCHHHHHHHHHTTCHHHHTTCGGGHHHHHHHHH---HHTCCBCC
T ss_pred CCCCCHHHHHHHHHHhC-CCCCCcHHHHHHHHHHhcchhccCCcccchhhhhhhh---hhhhhhcC
Confidence 45668999999999864 3456799999999999985 46777777776653 34566665
No 68
>2hdc_A Protein (transcription factor); structure, dyanamics, genesis, winged helix protein, protein/DNA complex; HET: DNA; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=92.84 E-value=0.14 Score=41.12 Aligned_cols=58 Identities=17% Similarity=0.214 Sum_probs=42.2
Q ss_pred CCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCC----CchhHHHHHHHHHHhhhhcCceeec
Q 020752 147 EPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYW----APANLRKLLATKLKFLSANGTLIKA 208 (322)
Q Consensus 147 ~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~----vp~nf~~lL~~~LKrlVa~GkLvkv 208 (322)
++.-+|..||..||..- ..++.+..-|.+||+++|+ -+..++.-|++.|-- +.-|+||
T Consensus 2 KPp~SY~~LI~~AI~~s-p~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLSl---n~~F~Kv 63 (97)
T 2hdc_A 2 KPPYSYIALITMAILQS-PQKKLTLSGICEFISNRFPYYREKFPAWQNSIRHNLSL---NDCFVKI 63 (97)
T ss_dssp CCCCCHHHHHHHHHHTC-TTTCBCHHHHHHHHHHHCHHHHHHCSSHHHHHHHHHHH---HHCCEEE
T ss_pred cCCCCHHHHHHHHHHhC-CCCCCCHHHHHHHHHHhchhhccCCcceehhhhhhhhh---hhheeec
Confidence 34568999999999874 3456899999999999985 355666666666532 3456655
No 69
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=91.41 E-value=0.026 Score=43.15 Aligned_cols=51 Identities=10% Similarity=0.256 Sum_probs=43.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC--CCchhhccCcccccccCCCCHHhHHHHHHHhcccc
Q 020752 3 APKQKWTAEEEAALKAGVRKHGT--GKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (322)
Q Consensus 3 ~~r~~WT~EEe~~L~~GV~k~G~--GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (322)
-.-..||.|||..|+...++-|. -.|..|.. .| +||..++++|++.|.+..
T Consensus 12 e~vvlWTReeDR~IL~~cq~~G~s~~tfa~iA~------~L-nks~~QV~~RF~~Lm~Lf 64 (70)
T 2lr8_A 12 EIIILWTRNDDRVILLECQKRGPSSKTFAYLAA------KL-DKNPNQVSERFQQLMKLF 64 (70)
Confidence 34457999999999999999998 47888876 35 899999999999988764
No 70
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=91.97 E-value=0.15 Score=47.31 Aligned_cols=50 Identities=18% Similarity=0.337 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHH-h--------------------------------CC------------------------CC
Q 020752 5 KQKWTAEEEAALKAGVRK-H--------------------------------GT------------------------GK 27 (322)
Q Consensus 5 r~~WT~EEe~~L~~GV~k-~--------------------------------G~------------------------Gk 27 (322)
+.+||.|||-.|...|.+ | |. +.
T Consensus 94 K~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~gp~~~~~ 173 (246)
T 1ign_A 94 KRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQSRRGPIAREF 173 (246)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCCCCCCCCCTTH
T ss_pred cCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccccccCcchHHH
Confidence 789999999999999988 2 11 36
Q ss_pred chhhccCcccccccCCCCHHhHHHHHHHhcccc
Q 020752 28 WRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (322)
Q Consensus 28 W~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (322)
|+.|.+ .|++||.+..+||||.+++..
T Consensus 174 fk~ia~------~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 174 FKHFAE------EHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp HHHHHH------HTTTSCHHHHHHHHHHTHHHH
T ss_pred HHHHHH------HCCCCChhhHHHHHHHHHhhc
Confidence 888887 358999999999999988764
No 71
>3l2c_A Forkhead box protein O4; winged helix, transcription-DNA COMP; 1.87A {Homo sapiens} SCOP: a.4.5.14 PDB: 3co6_C*
Probab=91.77 E-value=0.42 Score=39.23 Aligned_cols=60 Identities=18% Similarity=0.158 Sum_probs=45.3
Q ss_pred CCCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCC---C------chhHHHHHHHHHHhhhhcCceeecc
Q 020752 146 KEPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYW---A------PANLRKLLATKLKFLSANGTLIKAK 209 (322)
Q Consensus 146 ~~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~---v------p~nf~~lL~~~LKrlVa~GkLvkvK 209 (322)
.+..-+|..||..||....+ +..+...|..||+++|. . ...++.-|+..|- -+.-|+||.
T Consensus 23 ~kPpySY~~LI~~AI~~sp~-~~LtL~eIY~~I~~~fPyyr~~~~~~s~~gWqNSIRHNLS---ln~~F~Kv~ 91 (110)
T 3l2c_A 23 AWGNQSYAELISQAIESAPE-KRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLS---LHSKFIKVH 91 (110)
T ss_dssp TTBSCCHHHHHHHHHHHSTT-SCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHH---HCTTEEEEC
T ss_pred CCCCCCHHHHHHHHHHhCCc-cCcCHHHHHHHHHHhCchhhcCccccCCCCcccchhhhcc---HhhhheeCC
Confidence 34556899999999998655 34899999999999985 1 2467777777653 456787774
No 72
>1kq8_A HFH-1, hepatocyte nuclear factor 3 forkhead homolog 1, winged; winged helix protein, structure, transcription; NMR {Rattus norvegicus} SCOP: a.4.5.14
Probab=91.64 E-value=0.18 Score=40.75 Aligned_cols=57 Identities=21% Similarity=0.225 Sum_probs=39.8
Q ss_pred CCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCC----CchhHHHHHHHHHHhhhhcCceeec
Q 020752 148 PVARLDKLILEAISNLKEPNGSDRASIASYIEDQYW----APANLRKLLATKLKFLSANGTLIKA 208 (322)
Q Consensus 148 ~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~----vp~nf~~lL~~~LKrlVa~GkLvkv 208 (322)
+.-+|..||..||..-. .+..+..-|.+||+++|. .+..++.-|++.|- -+.-|++|
T Consensus 3 Pp~SY~~LI~~AI~~sp-~~~ltL~eIY~~i~~~fpyyr~~~~gWqNSIRHNLS---ln~~F~kv 63 (100)
T 1kq8_A 3 PPYSYIALITMAIRDSA-GGRLTLAEINEYLMGKFPFFRGSYTGWRNSVRHNLS---LNDCFVKV 63 (100)
T ss_dssp ----CHHHHHHHHTTSS-SSCBCHHHHHHHHHHHCTTGGGTCSCCHHHHHHHHH---HHTCCEEC
T ss_pred CCCCHHHHHHHHHHhCC-CCCCcHHHHHHHHHHhCccccCCCCceecccchhee---hhheeeec
Confidence 45579999999999854 355899999999999986 35566666666553 23556665
No 73
>3bpy_A FORK head domain, forkhead transcription factor FOXO4, DNA binding domain; forkhead BOX, winged helix; 1.87A {Homo sapiens}
Probab=91.30 E-value=0.54 Score=36.82 Aligned_cols=59 Identities=19% Similarity=0.162 Sum_probs=44.1
Q ss_pred CCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCC----C-----chhHHHHHHHHHHhhhhcCceeecc
Q 020752 147 EPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYW----A-----PANLRKLLATKLKFLSANGTLIKAK 209 (322)
Q Consensus 147 ~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~----v-----p~nf~~lL~~~LKrlVa~GkLvkvK 209 (322)
++.-+|..||..||....+ +..+...|..||+++|+ . ...++.-|++.|- -+.-|+||.
T Consensus 5 kp~~SY~~LI~~Ai~~sp~-~~ltL~eIY~~i~~~fpyy~~~~~~~s~~gWqNSIRHNLS---ln~~F~Kv~ 72 (85)
T 3bpy_A 5 WGNQSYAELISQAIESAPE-KRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNLS---LHSKFIKVH 72 (85)
T ss_dssp TBSCCHHHHHHHHHHHSTT-SCBCHHHHHHHHHHHCGGGTTCTTCCTTSHHHHHHHHHHH---HCTTEEEEC
T ss_pred cCCCCHHHHHHHHHHhCCc-CCccHHHHHHHHHHhCcchhcCccCccCCCcchhhhhhcc---HhhhheeCC
Confidence 3456899999999998554 34899999999999985 1 2467777776553 457777774
No 74
>3coa_C Forkhead box protein O1; winged helix, forkhead domain, chromosomal rearrangement; HET: DNA; 2.20A {Homo sapiens} PDB: 3co7_C* 2k86_A 2uzk_A
Probab=90.39 E-value=0.62 Score=38.68 Aligned_cols=59 Identities=14% Similarity=0.119 Sum_probs=43.8
Q ss_pred CCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCC----Cc-----hhHHHHHHHHHHhhhhcCceeecc
Q 020752 147 EPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYW----AP-----ANLRKLLATKLKFLSANGTLIKAK 209 (322)
Q Consensus 147 ~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~----vp-----~nf~~lL~~~LKrlVa~GkLvkvK 209 (322)
++.-+|..||..||..- ..+.....-|..||+++|+ -+ ..++.-|++.|- -+.-|++|.
T Consensus 11 kPp~SYa~LI~~AI~~s-p~~~LTL~eIY~~I~~~fPyyr~~~d~~s~~gWqNSIRHNLS---ln~~F~Kv~ 78 (117)
T 3coa_C 11 WGNLSYADLITKAIESS-AEKRLTLSQIYEWMVKSVPYFKDKGDSNSSAGWKNSIRHNLS---LHSKFIRVQ 78 (117)
T ss_dssp TBSCCHHHHHHHHHHTS-TTSCBCHHHHHHHHHHHCGGGTTCCSHHHHHHHHHHHHHHHH---HCTTEEEEC
T ss_pred CCCCCHHHHHHHHHHhC-CCCCccHHHHHHHHHHhCcccccCCCCcccccchhccchhee---cchhhcccc
Confidence 45678999999999974 3456899999999999985 12 566766666553 456777763
No 75
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=88.79 E-value=0.59 Score=43.80 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC--CCchhhccCcccccccCCCCHHhHHHHHHHhcccc
Q 020752 4 PKQKWTAEEEAALKAGVRKHGT--GKWRTILSDPEFSAILHSRSNVDLKDKWRNINVTA 60 (322)
Q Consensus 4 ~r~~WT~EEe~~L~~GV~k~G~--GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~k~~ 60 (322)
|++.||.-|...|++.+.|||. +.|..|..|.. |..++...++.=+..|....
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~----L~~ks~~~i~~~~~~li~~c 56 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIADGT----LPVKSFEKYGETYDEMMEAA 56 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTS----SCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcc----cccCCHHHHHHHHHHHHHHH
Confidence 7899999999999999999994 79999999865 46899999999887665543
No 76
>1e17_A AFX; DNA binding domain, winged helix; NMR {Homo sapiens} SCOP: a.4.5.14
Probab=84.44 E-value=1.3 Score=38.37 Aligned_cols=59 Identities=19% Similarity=0.141 Sum_probs=43.3
Q ss_pred CCCCChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCC---------chhHHHHHHHHHHhhhhcCceeecc
Q 020752 147 EPVARLDKLILEAISNLKEPNGSDRASIASYIEDQYWA---------PANLRKLLATKLKFLSANGTLIKAK 209 (322)
Q Consensus 147 ~~hp~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~v---------p~nf~~lL~~~LKrlVa~GkLvkvK 209 (322)
+..-+|..||..||..-. .+.....-|..||+++|+- ...++.-|+..| --+.-|++|.
T Consensus 40 kPp~SYa~LI~~AI~sSp-~k~LTL~eIY~wI~~~fPYfr~~~d~~s~~gWqNSIRHNL---SLnk~F~Kv~ 107 (150)
T 1e17_A 40 WGNQSYAELISQAIESAP-EKRLTLAQIYEWMVRTVPYFKDKGDSNSSAGWKNSIRHNL---SLHSKFIKVH 107 (150)
T ss_dssp TCSCCHHHHHHHHHHHSS-SCCEEHHHHHHHHHHHCGGGHHHHTSTTHHHHHHHHHHHH---HSSTTEEEEC
T ss_pred CCCCCHHHHHHHHHHhCC-CCCccHHHHHHHHHHhCchhccCCCCccccchhhccceee---eeeeeeEecC
Confidence 345789999999999853 3468999999999999851 245666666555 3456677774
No 77
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=72.96 E-value=0.72 Score=46.56 Aligned_cols=44 Identities=20% Similarity=0.413 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHh
Q 020752 6 QKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNI 56 (322)
Q Consensus 6 ~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl 56 (322)
..||++|...+.+++.+||. +|..|.+ +|.+||..+|-.-|...
T Consensus 190 d~WT~eE~~lFe~al~~yGK-dF~~I~~------~lp~Ksv~e~V~yYY~W 233 (482)
T 2xag_B 190 DEWTVEDKVLFEQAFSFHGK-TFHRIQQ------MLPDKSIASLVKFYYSW 233 (482)
T ss_dssp ---------------------------------------------------
T ss_pred cccCHHHHHHHHHHHHHcCc-cHHHHHH------HcCCCCHHHHHHHhccc
Confidence 47999999999999999999 9999986 46899999998764433
No 78
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=58.82 E-value=13 Score=28.78 Aligned_cols=57 Identities=19% Similarity=0.214 Sum_probs=44.5
Q ss_pred ChHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeecccccccCC
Q 020752 151 RLDKLILEAISNLKEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAKHKYRITP 216 (322)
Q Consensus 151 ~y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlVa~GkLvkvK~syKi~~ 216 (322)
+..++|++-|..+.+ |..+..|+..+.=.+ +.++..|..|..+|-+.+..+.|.|.+
T Consensus 5 s~~eIi~~IL~~i~~--~~~~t~La~~~~ls~-------~~~~~~l~~L~~~GLI~~~~~~~~LT~ 61 (95)
T 1r7j_A 5 SKLEIIQAILEACKS--GSPKTRIMYGANLSY-------ALTGRYIKMLMDLEIIRQEGKQYMLTK 61 (95)
T ss_dssp CHHHHHHHHHHHHTT--CBCHHHHHHHHTCCH-------HHHHHHHHHHHHTTSEEEETTEEEECH
T ss_pred CHHHHHHHHHHHHHc--CCCHHHHHHHhCcCH-------HHHHHHHHHHHHCCCeEEECCeeEECh
Confidence 457888888888874 388888877654332 457888999999999999988888855
No 79
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=57.87 E-value=13 Score=35.30 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=38.6
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchhhccCcccccccCCCCHHhHHHHHHHhc
Q 020752 6 QKWTAEEEAALKAGVRKHGTGKWRTILSDPEFSAILHSRSNVDLKDKWRNIN 57 (322)
Q Consensus 6 ~~WT~EEe~~L~~GV~k~G~GkW~~I~~d~~f~~~l~~RT~vdLKDKWRnl~ 57 (322)
..||..+-..++.++.+||...|..|+.+ +.+.|..+++.=...+.
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~e------v~~Kt~eEV~~Y~~vFw 156 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKD------VEGKTPEEVIEYNAVFW 156 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTS------STTCCHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHH------hcCCCHHHHHHHHHHHH
Confidence 46999999999999999999999999983 35899999976644333
No 80
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=57.23 E-value=15 Score=27.38 Aligned_cols=58 Identities=21% Similarity=0.327 Sum_probs=45.6
Q ss_pred hHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeecc---cccccCC
Q 020752 152 LDKLILEAISNLKEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAK---HKYRITP 216 (322)
Q Consensus 152 y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlVa~GkLvkvK---~syKi~~ 216 (322)
.+..|++.|..+.+..+.+...|++-+. ++ ++-++..|.+|...|.|..+. +.|++.+
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~Lg----vs---~~tV~~~L~~L~~~G~I~~~g~~~~~W~i~~ 75 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKLG----TP---KKEINRVLYSLAKKGKLQKEAGTPPLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHHC----CC---HHHHHHHHHHHHHHTSEEEECSSSCEEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHC----cC---HHHHHHHHHHHHHCCCEEecCCCCCceEecC
Confidence 3577889999988888899988888764 44 356899999999999998764 4566654
No 81
>2kpm_A Uncharacterized protein; methods development, structural genomics, PSI-2, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=52.69 E-value=23 Score=28.67 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=32.4
Q ss_pred CChHHHHHHHHHhCCCCCC-CCHHHHHHHHHhhCC--CchhH
Q 020752 150 ARLDKLILEAISNLKEPNG-SDRASIASYIEDQYW--APANL 188 (322)
Q Consensus 150 p~y~~MI~EAI~~Lker~G-SS~~AI~kyIe~~y~--vp~nf 188 (322)
....++|.+||..+.+.+| .+..+|-.||..+|+ .|-|+
T Consensus 20 ~~l~~lL~~Ai~~~~dddGWa~Lg~vG~~L~k~~PdFDpRnY 61 (105)
T 2kpm_A 20 AFPRKFVLAALEQSSDDAGWANLGNFGNYLNKLQPDFDSRLY 61 (105)
T ss_dssp CCCHHHHHHHHHHTBCTTSCEEHHHHHHHHHHHCTTCCGGGT
T ss_pred HHHHHHHHHHHHHhcCCcCcEeHHHHHHHHHHhCcCCCcccc
Confidence 3558999999999998777 799999999999987 35553
No 82
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=50.64 E-value=12 Score=28.33 Aligned_cols=29 Identities=31% Similarity=0.519 Sum_probs=23.7
Q ss_pred HHHHHHHHhCCCCCCCCHH---HHHHHHHhhC
Q 020752 154 KLILEAISNLKEPNGSDRA---SIASYIEDQY 182 (322)
Q Consensus 154 ~MI~EAI~~Lker~GSS~~---AI~kyIe~~y 182 (322)
+-|-.||++...|.|.|.. -|+.||..+|
T Consensus 51 eyinnaisafssrtgisqetaqkiadfitsny 82 (82)
T 3fbl_A 51 EYINNAISAFSSRTGISQETAQKIADFITSNY 82 (82)
T ss_dssp HHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHhcCC
Confidence 4456688999999999874 5889999887
No 83
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=48.91 E-value=23 Score=27.57 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=39.8
Q ss_pred hHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeeccccc-ccC
Q 020752 152 LDKLILEAISNLKEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAKHKY-RIT 215 (322)
Q Consensus 152 y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlVa~GkLvkvK~sy-Ki~ 215 (322)
..+.|++++....++ .+-.-|+ +.-.++ ++-|+.+|++|-..|+|+.++.+| .|.
T Consensus 20 ~eekVLe~LkeaG~P--lkageIa----e~~Gvd---KKeVdKaik~LKkEgkI~SPkRCyw~~~ 75 (80)
T 2lnb_A 20 LEQRILQVLTEAGSP--VKLAQLV----KECQAP---KRELNQVLYRMKKELKVSLTSPATWCLG 75 (80)
T ss_dssp HHHHHHHHHHHHTSC--EEHHHHH----HHHTSC---HHHHHHHHHHHHHTTSEEEEETTEEEES
T ss_pred HHHHHHHHHHHcCCC--CCHHHHH----HHHCCC---HHHHHHHHHHHHHcCCccCCCCceeeCC
Confidence 367899999887765 3333333 333455 567899999999999999999865 553
No 84
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=46.42 E-value=29 Score=26.58 Aligned_cols=51 Identities=14% Similarity=0.135 Sum_probs=39.8
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeeccc
Q 020752 153 DKLILEAISNLKEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAKH 210 (322)
Q Consensus 153 ~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlVa~GkLvkvK~ 210 (322)
.++|+.+|..|.+.......-|++ +..++ ++-++..|-+|-.+|.|.++.+
T Consensus 14 ~~~v~~~i~~L~~~~~~Ta~~IAk----kLg~s---K~~vNr~LY~L~kkG~V~~~~~ 64 (75)
T 1sfu_A 14 FSLVKKEVLSLNTNDYTTAISLSN----RLKIN---KKKINQQLYKLQKEDTVKMVPS 64 (75)
T ss_dssp HHHHHHHHHTSCTTCEECHHHHHH----HTTCC---HHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHHHhCCCCcchHHHHHHH----HHCCC---HHHHHHHHHHHHHCCCEecCCC
Confidence 678999999999887766555554 55555 4568889999999999987754
No 85
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=44.69 E-value=48 Score=24.60 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeecccccccCCC
Q 020752 168 GSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAKHKYRITPN 217 (322)
Q Consensus 168 GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlVa~GkLvkvK~syKi~~~ 217 (322)
+.+...|+..+ .++ +..++.+|+.|.+.|-|....|.|.|.+.
T Consensus 43 ~~~~~eLa~~l----~is---~~tv~~~L~~L~~~Glv~~~~g~y~l~~~ 85 (96)
T 1y0u_A 43 GRSEEEIMQTL----SLS---KKQLDYHLKVLEAGFCIERVGERWVVTDA 85 (96)
T ss_dssp TCCHHHHHHHH----TCC---HHHHHHHHHHHHHTTSEEEETTEEEECTT
T ss_pred CCCHHHHHHHH----CcC---HHHHHHHHHHHHHCCCEEEECCEEEECCC
Confidence 35655555444 333 33588899999999999987788888764
No 86
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=43.16 E-value=15 Score=28.02 Aligned_cols=60 Identities=22% Similarity=0.189 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCCchhH----HHHHHHHHHhhhhcCceee-cccccccC
Q 020752 153 DKLILEAISNLKEPNGSDRASIASYIEDQYWAPANL----RKLLATKLKFLSANGTLIK-AKHKYRIT 215 (322)
Q Consensus 153 ~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~vp~nf----~~lL~~~LKrlVa~GkLvk-vK~syKi~ 215 (322)
-.-|.-=|+++ +.....-|...+.==-.-.+.| ...|..-|-++|..|+|+. ..|.|||.
T Consensus 10 w~yI~GMLtN~---~slpl~RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e~kL~~~~gG~YkL~ 74 (74)
T 1ldd_A 10 LPFIEGMLTNL---GAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADEGRLKYIANGSYEIV 74 (74)
T ss_dssp HHHHHHHHHHH---CSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHTTSEECCTTTEEEEC
T ss_pred HHHHHHHHhcC---CCCCHHHHHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhCCeEEEeCCCEEeCC
Confidence 33444445544 3345555555554221111122 2578999999999999997 58899984
No 87
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=40.19 E-value=76 Score=23.93 Aligned_cols=58 Identities=21% Similarity=0.342 Sum_probs=42.6
Q ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeecc---cccccCCC
Q 020752 153 DKLILEAISNLKEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAK---HKYRITPN 217 (322)
Q Consensus 153 ~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlVa~GkLvkvK---~syKi~~~ 217 (322)
+.-|++.|.......+.+..-|++-+. ++ ++-++.+|.+|...|.|..+. +.|.|.+.
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lg----vs---r~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~ 72 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLG----TP---KKEINRVLYSLAKKGKLQKEAGTPPLWKIAVS 72 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHT----CC---HHHHHHHHHHHHHTTSEEEESSSSCEEEEC--
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHC----cC---HHHHHHHHHHHHHCCCEEecCCCCCeeEEeCc
Confidence 455888888766666788888877664 44 457899999999999998764 46777653
No 88
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=38.36 E-value=75 Score=23.41 Aligned_cols=50 Identities=12% Similarity=0.214 Sum_probs=37.1
Q ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeecc
Q 020752 154 KLILEAISNLKEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAK 209 (322)
Q Consensus 154 ~MI~EAI~~Lker~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlVa~GkLvkvK 209 (322)
-.|+..| .+.+|.+...|.+.|.+...+. +..++..|++|+..|-|.+..
T Consensus 11 ~~iL~~l---~~~~~~~~~el~~~la~~l~is---~~tvs~~l~~Le~~gli~r~~ 60 (99)
T 1tbx_A 11 AIVLAYL---YDNEGIATYDLYKKVNAEFPMS---TATFYDAKKFLIQEGFVKERQ 60 (99)
T ss_dssp HHHHHHH---TTCTTCBHHHHHHHHHTTSCCC---HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHH---HHcCCcCHHHHHHHHHHHcCCC---HHHHHHHHHHHHHCCCEEEEe
Confidence 3455555 4457889999988887777664 335788899999999998753
No 89
>2kzv_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; NMR {Chromobacterium violaceum}
Probab=37.80 E-value=49 Score=25.90 Aligned_cols=38 Identities=21% Similarity=0.400 Sum_probs=32.0
Q ss_pred ChHHHHHHHHHhCCCCCC-CCHHHHHHHHHhhCC--CchhH
Q 020752 151 RLDKLILEAISNLKEPNG-SDRASIASYIEDQYW--APANL 188 (322)
Q Consensus 151 ~y~~MI~EAI~~Lker~G-SS~~AI~kyIe~~y~--vp~nf 188 (322)
...++|.+||..+.+.+| .+..+|..||..+|+ .|-|+
T Consensus 8 ~l~~ll~~Ai~~~~dedGWa~Lg~vG~~i~k~~PdFD~RnY 48 (92)
T 2kzv_A 8 PLQDMFTSAIEAVARDSGWAELSAVGSYLAKNDPSFDPRNW 48 (92)
T ss_dssp SHHHHHHHHHHHHTTTTSSCBHHHHHHHHHHHCTTCCTTTT
T ss_pred HHHHHHHHHHHHhcCCCCcEeHHHHHHHHHHhCcCCCcccc
Confidence 568999999999998777 799999999999987 35553
No 90
>1psm_A SPAM-H1; polymorphic antigen; NMR {Plasmodium falciparum} SCOP: j.18.1.1
Probab=37.78 E-value=0.71 Score=31.09 Aligned_cols=15 Identities=67% Similarity=0.689 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 020752 279 EAEVAIAEAEEAARE 293 (322)
Q Consensus 279 EAE~~~~~AeeA~~E 293 (322)
|||+++-+||+|.++
T Consensus 19 dAe~a~~~AEqAsKd 33 (38)
T 1psm_A 19 DAENASKEAEEAAKE 33 (38)
T ss_dssp TTTHHHHHTTTTTCT
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444433
No 91
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=31.04 E-value=1.1e+02 Score=21.82 Aligned_cols=52 Identities=15% Similarity=0.115 Sum_probs=39.0
Q ss_pred hHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeecc
Q 020752 152 LDKLILEAISNLKEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAK 209 (322)
Q Consensus 152 y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlVa~GkLvkvK 209 (322)
....|++.|.. ..+.+...|...+.....+. ..-+...|++|++.|-|...+
T Consensus 10 ~e~~vL~~L~~---~~~~t~~ei~~~l~~~~~~s---~~Tv~~~l~rL~~kGlv~r~~ 61 (82)
T 1p6r_A 10 AELEVMKVIWK---HSSINTNEVIKELSKTSTWS---PKTIQTMLLRLIKKGALNHHK 61 (82)
T ss_dssp HHHHHHHHHHT---SSSEEHHHHHHHHHHHSCCC---HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHc---CCCCCHHHHHHHHhhcCCcc---HHHHHHHHHHHHHCCCeEEEe
Confidence 35567888776 35789999999998653332 235788899999999998765
No 92
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=28.51 E-value=1.2e+02 Score=22.18 Aligned_cols=40 Identities=15% Similarity=0.250 Sum_probs=28.9
Q ss_pred hCCCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeecc
Q 020752 162 NLKEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAK 209 (322)
Q Consensus 162 ~Lker~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlVa~GkLvkvK 209 (322)
.|.+ ++.+...|+..+ .++ ...++.+|+.|.+.|-|...+
T Consensus 31 ~L~~-~~~~~~ela~~l----~is---~~tvs~~L~~L~~~Glv~~~~ 70 (98)
T 3jth_A 31 MLHN-QELSVGELCAKL----QLS---QSALSQHLAWLRRDGLVTTRK 70 (98)
T ss_dssp HTTT-SCEEHHHHHHHH----TCC---HHHHHHHHHHHHHTTSEEEEC
T ss_pred HHhc-CCCCHHHHHHHH----CcC---HHHHHHHHHHHHHCCCeEEEE
Confidence 3444 567777777776 333 346889999999999998664
No 93
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=26.53 E-value=51 Score=25.45 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=35.2
Q ss_pred HHHHHHHHhCCCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeeccc
Q 020752 154 KLILEAISNLKEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAKH 210 (322)
Q Consensus 154 ~MI~EAI~~Lker~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlVa~GkLvkvK~ 210 (322)
.+...-|.-|+ ++|.+...|++- ..++ +.-++.+|.+|...|.|++..+
T Consensus 17 ~~~~~IL~lL~-~~g~sa~eLAk~----LgiS---k~aVr~~L~~Le~eG~I~~~~~ 65 (82)
T 1oyi_A 17 EIVCEAIKTIG-IEGATAAQLTRQ----LNME---KREVNKALYDLQRSAMVYSSDD 65 (82)
T ss_dssp HHHHHHHHHHS-SSTEEHHHHHHH----SSSC---HHHHHHHHHHHHHHTSSEECSS
T ss_pred HHHHHHHHHHH-HcCCCHHHHHHH----HCcC---HHHHHHHHHHHHHCCCEEeCCC
Confidence 45555666677 577776666654 4454 3568899999999999998765
No 94
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=25.85 E-value=35 Score=24.61 Aligned_cols=39 Identities=8% Similarity=0.088 Sum_probs=28.1
Q ss_pred HhCCCCCCCCHHHHHHHHHhhC---CCchhHHHHHHHHHHhh
Q 020752 161 SNLKEPNGSDRASIASYIEDQY---WAPANLRKLLATKLKFL 199 (322)
Q Consensus 161 ~~Lker~GSS~~AI~kyIe~~y---~vp~nf~~lL~~~LKrl 199 (322)
..+-+.-|.|+.+|..+|..+- .+.+..+..|...++.+
T Consensus 4 ~diA~~aGVS~sTVSrvLng~~~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 4 DEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp HHHHHHHTSCHHHHHHHHHTCTTTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHh
Confidence 3444566999999999999876 67766666666665544
No 95
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=25.08 E-value=91 Score=22.15 Aligned_cols=55 Identities=18% Similarity=0.233 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhCCCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeecc-cccccC
Q 020752 152 LDKLILEAISNLKEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAK-HKYRIT 215 (322)
Q Consensus 152 y~~MI~EAI~~Lker~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlVa~GkLvkvK-~syKi~ 215 (322)
...-|++.|.. +....|...|++. ..++ +..+...|+.|.+.|.|+..+ |.|+|.
T Consensus 11 ~~~~IL~~L~~--~~~~~s~~eLA~~----lgls---r~tv~~~l~~L~~~G~I~~~~~G~y~lg 66 (67)
T 2heo_A 11 LEQKILQVLSD--DGGPVAIFQLVKK----CQVP---KKTLNQVLYRLKKEDRVSSPSPKYWSIG 66 (67)
T ss_dssp HHHHHHHHHHH--HCSCEEHHHHHHH----HCSC---HHHHHHHHHHHHHTTSEEEEETTEEEEC
T ss_pred HHHHHHHHHHH--cCCCcCHHHHHHH----HCcC---HHHHHHHHHHHHHCCcEecCCCceEeeC
Confidence 35567777765 2234676665544 4555 557788899999999988754 567763
No 96
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=24.20 E-value=49 Score=23.36 Aligned_cols=39 Identities=10% Similarity=0.230 Sum_probs=26.9
Q ss_pred HHHHHHhhCCCchhHHHHHHHHHHhhhhcCce----eecccccccCCCC
Q 020752 174 IASYIEDQYWAPANLRKLLATKLKFLSANGTL----IKAKHKYRITPNT 218 (322)
Q Consensus 174 I~kyIe~~y~vp~nf~~lL~~~LKrlVa~GkL----vkvK~syKi~~~~ 218 (322)
|..+.+..|. +++ ...|.+.+.+|+| +|+.++|++.++.
T Consensus 5 l~EwA~~~~~-~~s-----~~Tl~r~ar~G~I~Pp~~KvGr~wrv~~~a 47 (52)
T 2og0_A 5 LQEWNARQRR-PRS-----LETVRRWVRESRIFPPPVKDGREYLFHESA 47 (52)
T ss_dssp HHHHHHTSSS-CCC-----HHHHHHHHHTTCEESCCEEETTEEEEETTC
T ss_pred HHHHHHHhcC-CCC-----HHHHHHHHHCCCCCCcccccCCEEEEcccc
Confidence 4445555553 333 4558888999999 8899999997654
No 97
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=23.62 E-value=1.5e+02 Score=22.18 Aligned_cols=21 Identities=24% Similarity=0.164 Sum_probs=17.9
Q ss_pred HHHHHHHhhhhcCceeecccc
Q 020752 191 LLATKLKFLSANGTLIKAKHK 211 (322)
Q Consensus 191 lL~~~LKrlVa~GkLvkvK~s 211 (322)
-+...|+.|..+|.|..+.|.
T Consensus 40 TVrr~L~~Le~kG~I~R~~gg 60 (77)
T 2jt1_A 40 QVRLYLEQLHDVGVLEKVNAG 60 (77)
T ss_dssp HHHHHHHHHHHTTSEEEESCS
T ss_pred HHHHHHHHHHHCCcEEecCCC
Confidence 488999999999999987553
No 98
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=21.15 E-value=1.1e+02 Score=22.13 Aligned_cols=39 Identities=8% Similarity=0.120 Sum_probs=27.9
Q ss_pred CCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeecc
Q 020752 164 KEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAK 209 (322)
Q Consensus 164 ker~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlVa~GkLvkvK 209 (322)
.+..+.+...|.+.+ .++ +..++..|+.|...|-|...+
T Consensus 34 ~~~~~~s~~ela~~l----~is---~~tvs~~l~~L~~~glv~~~~ 72 (99)
T 3cuo_A 34 SGSPGTSAGELTRIT----GLS---ASATSQHLARMRDEGLIDSQR 72 (99)
T ss_dssp TTCCSEEHHHHHHHH----CCC---HHHHHHHHHHHHHTTSEEEEE
T ss_pred HhCCCcCHHHHHHHH----CcC---HHHHHHHHHHHHHCCCEEEEe
Confidence 445567777777666 333 345788899999999998764
No 99
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=21.01 E-value=1.5e+02 Score=22.81 Aligned_cols=54 Identities=17% Similarity=0.138 Sum_probs=36.4
Q ss_pred HHHHHHHHhC-CCCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeeccccccc
Q 020752 154 KLILEAISNL-KEPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAKHKYRI 214 (322)
Q Consensus 154 ~MI~EAI~~L-ker~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlVa~GkLvkvK~syKi 214 (322)
.-++.+|..+ .+..+.+...|++.+ .++ +..++..|++|...|-|.+..+.|.|
T Consensus 16 ~~~L~~l~~l~~~~~~~s~~ela~~l----~is---~~tv~~~l~~Le~~Gli~r~~~~~~L 70 (139)
T 2x4h_A 16 FSYLLTIKRYNDSGEGAKINRIAKDL----KIA---PSSVFEEVSHLEEKGLVKKKEDGVWI 70 (139)
T ss_dssp HHHHHHHHHHHTTTSCBCHHHHHHHH----TCC---HHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHh----CCC---hHHHHHHHHHHHHCCCEEecCCeEEE
Confidence 3455666654 345567888888765 333 34578889999999988876544444
No 100
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=20.86 E-value=1.4e+02 Score=23.33 Aligned_cols=60 Identities=17% Similarity=0.156 Sum_probs=44.3
Q ss_pred hHHHHHHHHHhCC-------CCCCCCHHHHHHHHHhhCCCchhHHHHHHHHHHhhhhcCceeecccccccCC
Q 020752 152 LDKLILEAISNLK-------EPNGSDRASIASYIEDQYWAPANLRKLLATKLKFLSANGTLIKAKHKYRITP 216 (322)
Q Consensus 152 y~~MI~EAI~~Lk-------er~GSS~~AI~kyIe~~y~vp~nf~~lL~~~LKrlVa~GkLvkvK~syKi~~ 216 (322)
|..+.-+.+..|. ++-|.++.-+...+-.++ + .+++..-|..++++|.|+...+-++++.
T Consensus 64 ~~~l~~~l~~~L~~yH~~~P~~~G~~keeLr~~~~~~~--~---~~~~~~ll~~l~~~g~l~~~~~~v~Lp~ 130 (135)
T 2v9v_A 64 YQAWWQAVTRALEEFHSRYPLRPGLAREELRSRYFSRL--P---ARVYQALLEEWSREGRLQLAANTVALAG 130 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHHCTTS--C---HHHHHHHHHHHHHTTSEEECSSEEEETT
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCCCHHHHHHHhcccC--C---HHHHHHHHHHHHHCCCEEecCCEEECCC
Confidence 5666666666666 799999999988774322 3 3345666899999999999988887743
Done!