BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020753
(322 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2C29|D Chain D, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2C29|F Chain F, Structure Of Dihydroflavonol Reductase From Vitis Vinifera
At 1.8 A.
pdb|2IOD|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2IOD|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|2NNL|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol-4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3C1T|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|A Chain A, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|B Chain B, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|C Chain C, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|D Chain D, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|E Chain E, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
pdb|3BXX|F Chain F, Binding Of Two Substrate Analogue Molecules To
Dihydroflavonol 4-Reductase Alters The Functional
Geometry Of The Catalytic Site
Length = 337
Score = 186 bits (472), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 116/326 (35%), Positives = 169/326 (51%), Gaps = 11/326 (3%)
Query: 3 GEDKERVCVTGAGGYIASWLVKYLLLKGYMVHGTVRDPCDEKNA-HLKKLEGASENLQLF 61
G E VCVTGA G+I SWLV LL +GY V TVRDP + K HL L A +L L+
Sbjct: 2 GSQSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNVKKVKHLLDLPKAETHLTLW 61
Query: 62 KTDLLDYEALCAATAGCTGVFHVACPVPVGKVPNPEVQLIDPAVVGTKNVLNSCXXXXXX 121
K DL D + A GCTGVFHVA P+ + +PE ++I P + G ++ SC
Sbjct: 62 KADLADEGSFDEAIKGCTGVFHVATPMDF-ESKDPENEVIKPTIEGMLGIMKSCAAAKTV 120
Query: 122 XXXXXSSIGAVMLNPNWPKGQVMDEECWSDEEFCKA---TENYYCLAKTIAEIQALEYAK 178
+S A +N + V DE CWSD EFC+A T Y ++KT+AE A +YAK
Sbjct: 121 RRLVFTS-SAGTVNIQEHQLPVYDESCWSDMEFCRAKKMTAWMYFVSKTLAEQAAWKYAK 179
Query: 179 RGELDIVTVCPSIVIGPMLQPTINTSSLLLLG-FLKDRTEPLXXXXXXXXXXXXXXXAIL 237
+D +T+ P++V+GP + ++ S + L + A +
Sbjct: 180 ENNIDFITIIPTLVVGPFIMSSMPPSLITALSPITGNEAHYSIIRQGQFVHLDDLCNAHI 239
Query: 238 LIYEKPEAKGRYICTSFTIRMQALAEKIKSMYPNYDYSKSFTKVDEELR---LSSGKLQN 294
++E P+A+GRYIC+S + LA+ ++ YP Y+ F VDE L+ SS KL +
Sbjct: 240 YLFENPKAEGRYICSSHDCIILDLAKMLREKYPEYNIPTEFKGVDENLKSVCFSSKKLTD 299
Query: 295 LGWKYR-PLEESIRDSVKNYEEAGIL 319
LG++++ LE+ +V G+L
Sbjct: 300 LGFEFKYSLEDMFTGAVDTCRAKGLL 325
>pdb|2RH8|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|A Chain A, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
pdb|3HFS|B Chain B, Structure Of Apo Anthocyanidin Reductase From Vitis
Vinifera
Length = 338
Score = 147 bits (372), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 105/331 (31%), Positives = 164/331 (49%), Gaps = 18/331 (5%)
Query: 6 KERVCVTGAGGYIASWLVKYLLLKGYMVHGTVRDPCDEKN-AHLKKLEGASENLQLFKTD 64
K+ CV G G++AS LVK LL KGY V+ TVRDP ++K +HL +L+ + L++F+ D
Sbjct: 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKKVSHLLELQELGD-LKIFRAD 67
Query: 65 LLDYEALCAATAGCTGVFHVACPVPVGKVPNPEVQLIDPAVVGTKNVLNSCXXXXXXXXX 124
L D + A AGC VFHVA PV +PE +I PA+ G NV+ +C
Sbjct: 68 LTDELSFEAPIAGCDFVFHVATPVHFAS-EDPENDMIKPAIQGVVNVMKACTRAKSVKRV 126
Query: 125 X-XSSIGAVMLNPNWPKGQVMDEECWSDEEFCKATEN---YYCLAKTIAEIQALEYAKRG 180
SS AV +N G V+DE+ W+D EF + + Y +KT+AE A ++A+
Sbjct: 127 ILTSSAAAVTINQLDGTGLVVDEKNWTDIEFLTSAKPPTWGYPASKTLAEKAAWKFAEEN 186
Query: 181 ELDIVTVCPSIVIGPMLQPTINTSSLLLLGFLKD--------RTEPLXXXXXXXXXXXXX 232
+D++TV P+++ G L + +S L + + + +
Sbjct: 187 NIDLITVIPTLMAGSSLTSDVPSSIGLAMSLITGNEFLINGMKGMQMLSGSVSIAHVEDV 246
Query: 233 XXAILLIYEKPEAKGRYICTSFTIRMQALAEKIKSMYPNYDYSKSFTKV--DEELRLSSG 290
A + + EK A GRYIC + + LA+ + YP Y F +L +SS
Sbjct: 247 CRAHIFVAEKESASGRYICCAANTSVPELAKFLSKRYPQYKVPTDFGDFPPKSKLIISSE 306
Query: 291 KLQNLGWKYR-PLEESIRDSVKNYEEAGILH 320
KL G+ ++ +EE +SV+ ++ G+L
Sbjct: 307 KLVKEGFSFKYGIEEIYDESVEYFKAKGLLQ 337
>pdb|2P4H|X Chain X, Crystal Structure Of Vestitone Reductase From Alfalfa
(Medicago Sativa L.)
Length = 322
Score = 139 bits (349), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 96/332 (28%), Positives = 166/332 (50%), Gaps = 28/332 (8%)
Query: 6 KERVCVTGAGGYIASWLVKYLLLKGYMVHGTVR-DPCDEKN-AHLKKLEGASENLQLFKT 63
K RVCVTG G++ SW++K LL GY V+ T+R DP +++ + L L GASE L F
Sbjct: 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRDVSFLTNLPGASEKLHFFNA 60
Query: 64 DLLDYEALCAATAGCTGVFHVACPVPVGKVPNPEVQLIDPAVVGTKNVLNSCXXXXXXXX 123
DL + ++ AA GC G+FH A P+ V PE + V G +L +C
Sbjct: 61 DLSNPDSFAAAIEGCVGIFHTASPIDFA-VSEPEEIVTKRTVDGALGILKACVNSKTVKR 119
Query: 124 XXXSSIGAVMLNPNWPKGQVMDEECWSDEEFCKATENY---YCLAKTIAEIQALEYAKRG 180
+S G+ + + N V+DE WSD + ++ + + Y ++KT+AE LE+ ++
Sbjct: 120 FIYTSSGSAV-SFNGKDKDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQN 178
Query: 181 ELDIVTVCPSIVIG----PMLQPTINTSSLLLLGFLKDRTEPLXXXXXXXXXXXXXXXAI 236
+D+VT+ ++G P L +I + +L+LG + E + A
Sbjct: 179 GIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLG----KKEQIGVTRFHMVHVDDVARAH 234
Query: 237 LLIYEKPEAKGRYICTSFTIRMQALAEKIKSMYPNYDYSKSFTKVDE--ELR------LS 288
+ + E GRY C+ F + ++ +++ + + YP Y VDE E++ L+
Sbjct: 235 IYLLENSVPGGRYNCSPFIVPIEEMSQLLSAKYPEY----QILTVDELKEIKGARLPDLN 290
Query: 289 SGKLQNLGWKYR-PLEESIRDSVKNYEEAGIL 319
+ KL + G+ ++ +E+ D+++ +E G L
Sbjct: 291 TKKLVDAGFDFKYTIEDMFDDAIQCCKEKGYL 322
>pdb|1Y1P|A Chain A, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1Y1P|B Chain B, X-Ray Structure Of Aldehyde Reductase With Nadph
pdb|1ZZE|A Chain A, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
pdb|1ZZE|B Chain B, X-Ray Structure Of Nadph-Dependent Carbonyl Reductase From
Sporobolomyces Salmonicolor
Length = 342
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 138/332 (41%), Gaps = 38/332 (11%)
Query: 9 VCVTGAGGYIASWLVKYLLLKGYMVHGTVRDPCDEKNAHLKKLEGASENLQLFKT----D 64
V VTGA G++AS +V+ LL GY V GT R K A+L+K A + F+T D
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSAS--KLANLQKRWDAKYPGR-FETAVVED 70
Query: 65 LLDYEALCAATAGCTGVFHVACPVPVGKVPNPEVQLIDPAVVGTKNVLNSCXXXXXXXXX 124
+L A G GV H+A V N +++ PA+ GT N L +
Sbjct: 71 MLKQGAYDEVIKGAAGVAHIASVV---SFSNKYDEVVTPAIGGTLNALRAAAATPSVKRF 127
Query: 125 --XXSSIGAVMLNPNWPKGQVMDEECWSDEEFCKA----------TENYYCLAKTIAEIQ 172
S++ A++ PN +G +DE+ W+ E KA + Y +KT AE+
Sbjct: 128 VLTSSTVSALIPKPN-VEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELA 186
Query: 173 ALEYA--KRGELDIVTVCPSIVIGPMLQPTINTSSL--LLLGFLKDRTEPLXXXXXXXXX 228
A ++ + + V P+ IG + P + S ++ P
Sbjct: 187 AWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGSTSGWMMSLFNGEVSPALALMPPQYY 246
Query: 229 XXXXXXAIL----LIYEKPEAKGRYICTSFTIRMQALAEKIKSMYPNYDYSKSFTKVDEE 284
+L L+ + E + R T+ T + + +YP+ + F ++
Sbjct: 247 VSAVDIGLLHLGCLVLPQIERR-RVYGTAGTFDWNTVLATFRKLYPSKTFPADFPDQGQD 305
Query: 285 L-RLSSGK----LQNLGWK-YRPLEESIRDSV 310
L + + L++LG +R +EESI+D V
Sbjct: 306 LSKFDTAPSLEILKSLGRPGWRSIEESIKDLV 337
>pdb|1UJM|A Chain A, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
pdb|1UJM|B Chain B, Crystal Structure Of Aldehyde Reductase 2 From
Sporobolomyces Salmonicolor Aku4429
Length = 342
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 93/209 (44%), Gaps = 25/209 (11%)
Query: 9 VCVTGAGGYIASWLVKYLLLKGYMVHGTVRDPCDEKNAHLKKLEGASENLQLFKT----D 64
V VTGA G++AS +V+ LL GY V GT R K A+L+K A + F+T D
Sbjct: 14 VLVTGANGFVASHVVEQLLEHGYKVRGTARSAS--KLANLQKRWDAKYPGR-FETAVVED 70
Query: 65 LLDYEALCAATAGCTGVFHVACPVPVGKVPNPEVQLIDPAVVGTKNVLNSCXXXXXXXXX 124
L A G GV H+A V N +++ PA+ GT N L +
Sbjct: 71 XLKQGAYDEVIKGAAGVAHIASVV---SFSNKYDEVVTPAIGGTLNALRAAAATPSVKRF 127
Query: 125 --XXSSIGAVMLNPNWPKGQVMDEECWSDEEFCKA----------TENYYCLAKTIAEIQ 172
S++ A++ PN +G +DE+ W+ E KA + Y +KT AE+
Sbjct: 128 VLTSSTVSALIPKPN-VEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELA 186
Query: 173 ALEYA--KRGELDIVTVCPSIVIGPMLQP 199
A ++ + + V P+ IG + P
Sbjct: 187 AWKFXDENKPHFTLNAVLPNYTIGTIFDP 215
>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
Pyrococcus Horikoshii Ot3
Length = 336
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 5/111 (4%)
Query: 8 RVCVTGAGGYIASWLVKYLLLK--GYMVHGTVRDPCDEKNAHLKKLEGASENLQLFKTDL 65
++ VTG G+I S ++Y+L K + V + A+LK LE K D+
Sbjct: 5 KLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNPANLKDLED-DPRYTFVKGDV 63
Query: 66 LDYEALCAATAGCTGVFHVACPVPVGK-VPNPEVQLIDPAVVGTKNVLNSC 115
DYE + GV H+A V + + +PE+ + V+GT +L S
Sbjct: 64 ADYELVKELVRKVDGVVHLAAESHVDRSISSPEI-FLHSNVIGTYTLLESI 113
>pdb|2Z1M|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z1M|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|A Chain A, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|B Chain B, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|C Chain C, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
pdb|2Z95|D Chain D, Crystal Structure Of Gdp-D-Mannose Dehydratase From
Aquifex Aeolicus Vf5
Length = 345
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 4/72 (5%)
Query: 1 MSGEDKERVCVTGAGGYIASWLVKYLLLKGYMVHGTVRDPCDEKNAHLKKLEGASENLQL 60
MSG+ R +TG G ++L K LL KGY V+G R + + LK+L G ++++
Sbjct: 1 MSGK---RALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKEL-GIENDVKI 56
Query: 61 FKTDLLDYEALC 72
DLL++ +
Sbjct: 57 IHMDLLEFSNII 68
>pdb|4EF7|A Chain A, Udp-Xylose Synthase
pdb|4EF7|B Chain B, Udp-Xylose Synthase
pdb|4GLL|A Chain A, Crystal Structure Of Human Udp-Xylose Synthase.
pdb|4GLL|B Chain B, Crystal Structure Of Human Udp-Xylose Synthase
Length = 337
Score = 36.2 bits (82), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 79/208 (37%), Gaps = 39/208 (18%)
Query: 4 EDKERVCVTGAGGYIASWLVKYLLLKGYMVHGTVRDPCDEKNAHLKKLEGASENLQLFKT 63
+D++R+ +TG G++ S L L++ G+ V TV D + EN +L
Sbjct: 3 KDRKRILITGGAGFVGSHLTDKLMMDGHEV--TVVDNFFTGRKRNVEHWIGHENFELINH 60
Query: 64 DLLDYEALCAATAGCTGVFHVACPV-PVGKVPNPEVQLIDPAVVGTKNVLNSCXXXXXXX 122
D++ E L ++H+A P P + NP ++ + +GT N+L
Sbjct: 61 DVV--EPLYIE---VDQIYHLASPASPPNYMYNP-IKTLKTNTIGTLNMLGLA------- 107
Query: 123 XXXXSSIGAVMLNPNWPKGQVMDEECWSDEEFCKATENY------------YCLAKTIAE 170
+GA +L E + D E +E+Y Y K +AE
Sbjct: 108 ----KRVGARLL-------LASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKRVAE 156
Query: 171 IQALEYAKRGELDIVTVCPSIVIGPMLQ 198
Y K+ +++ GP +
Sbjct: 157 TMCYAYMKQEGVEVRVARIFNTFGPRMH 184
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 35.8 bits (81), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 1 MSGEDKERVCVTGAGGYIASWLVKYLLLKGYMVHGTVRDPCDEKNAHLKKLEGASE---- 56
G + +TG G S+L ++LL KGY VHG VR ++ L +
Sbjct: 19 FQGHMRNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTGRIEHLYKNPQAHIE 78
Query: 57 -NLQLFKTDLLD 67
N++L DL D
Sbjct: 79 GNMKLHYGDLTD 90
>pdb|3ICP|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
pdb|3KO8|A Chain A, Crystal Structure Of Udp-Galactose 4-Epimerase
Length = 312
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 50/115 (43%), Gaps = 29/115 (25%)
Query: 8 RVCVTGAGGYIASWLVKYLLLKGYMVHGTVRDPCDEKNAHLKKLEGASENLQLFKTDLLD 67
R+ VTG G+I S LV L+ GY V V D N + E + + +L DL D
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEV--VVVD-----NLSSGRREFVNPSAELHVRDLKD 54
Query: 68 YEALCAATAGCTG--VFHVACPVPVGKVPNPEVQL--------IDPAVVGTKNVL 112
Y + AG G VFH A NPEV+L + VV T NVL
Sbjct: 55 Y----SWGAGIKGDVVFHFAA--------NPEVRLSTTEPIVHFNENVVATFNVL 97
>pdb|3DHN|A Chain A, Crystal Structure Of The Putative Epimerase Q89z24_bactn
From Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr310
Length = 227
Score = 35.4 bits (80), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 4 EDKERVCVTGAGGYIASWLVKYLLLKGYMVHGTVRDPCDEKNAHLKKLEGASENLQLFKT 63
E +++ + GA G++ S L+ L +G+ V VR P +K++ +E+L++ K
Sbjct: 2 EKVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP--------EKIKIENEHLKVKKA 53
Query: 64 DLLDYEALCAATAGCTGVFHVACP 87
D+ + +C G V P
Sbjct: 54 DVSSLDEVCEVCKGADAVISAFNP 77
>pdb|1RPN|A Chain A, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|B Chain B, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|C Chain C, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
pdb|1RPN|D Chain D, Crystal Structure Of Gdp-D-Mannose 4,6-Dehydratase In
Complexes With Gdp And Nadph
Length = 335
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 10 CVTGAGGYIASWLVKYLLLKGYMVHGTVRDPCDEKNAHLKKLEGASENLQLFKTDLLD 67
VTG G ++L K LL KGY VHG V + L++L G ++Q D+ D
Sbjct: 18 LVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLREL-GIEGDIQYEDGDMAD 74
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 4 EDKERVCVTGAGGYIASWLVKYLLLKGYMVHGTVRDPCDEKNAHLKKLEGASEN-----L 58
E ++ +TG G S+L ++LL KGY VHG +R + + + N +
Sbjct: 26 EPRKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQRINHIYIDPHNVNKALM 85
Query: 59 QLFKTDLLDYEAL 71
+L DL D +L
Sbjct: 86 KLHYADLTDASSL 98
>pdb|2P5U|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|C Chain C, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5U|D Chain D, Crystal Structure Of Thermus Thermophilus Hb8
Udp-Glucose 4- Epimerase Complex With Nad
pdb|2P5Y|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8
Udp-glucose 4- Epimerase Complex With Nad
Length = 311
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 8 RVCVTGAGGYIASWLVKYLLLKGYMVHGTVRDPCDEKNAHLKKLEGASENLQLFKTDLLD 67
RV VTG G+I S +V+ LL +G V V D N K E + + F+ DL D
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEV--AVLD-----NLATGKRENVPKGVPFFRVDLRD 54
Query: 68 YEAL 71
E +
Sbjct: 55 KEGV 58
>pdb|3AW9|A Chain A, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|B Chain B, Structure Of Udp-Galactose 4-Epimerase Mutant
pdb|3AW9|C Chain C, Structure Of Udp-Galactose 4-Epimerase Mutant
Length = 308
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 50/115 (43%), Gaps = 33/115 (28%)
Query: 8 RVCVTGAGGYIASWLVKYLLLKGYMVHGTVRDPCDEKNAHLKKLEGASENLQLFKTDLLD 67
R+ VTG G+I S LV L+ GY V V D +++ G S L + DL D
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEV--VVVDI-------VQRDTGGSAELHV--RDLKD 50
Query: 68 YEALCAATAGCTG--VFHVACPVPVGKVPNPEVQL--------IDPAVVGTKNVL 112
Y + AG G VFH A NPEV+L + VV T NVL
Sbjct: 51 Y----SWGAGIKGDVVFHFAA--------NPEVRLSTTEPIVHFNENVVATFNVL 93
>pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
pdb|2PK3|B Chain B, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose
Reductase
Length = 321
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/190 (21%), Positives = 73/190 (38%), Gaps = 20/190 (10%)
Query: 8 RVCVTGAGGYIASWLVKYLLLKGYMVHGTVRDPCDEKNAHLKKLEGASENLQLFKTDLLD 67
R +TG G++ +L +L + V GT R+ E N+++ D++D
Sbjct: 14 RALITGVAGFVGKYLANHLTEQNVEVFGTSRNN-----------EAKLPNVEMISLDIMD 62
Query: 68 YEALCAATAGCTG--VFHVACPVPVGKVPNPEVQLIDPAVVGTKNVLNSCXXXXXXXXXX 125
+ + + +FH+A V + V GT +VL++
Sbjct: 63 SQRVKKVISDIKPDYIFHLAAKSSVKDSWLNKKGTFSTNVFGTLHVLDAVRDSNLDCRIL 122
Query: 126 XSSIGAVMLNPNWPKGQVMDEECWSDEEFCKATENYYCLAKTIAEIQALEYAKRGELDIV 185
+IG+ + G ++ EE EE + Y ++K + A +Y K +DI+
Sbjct: 123 --TIGS-----SEEYGMILPEESPVSEENQLRPMSPYGVSKASVGMLARQYVKAYGMDII 175
Query: 186 TVCPSIVIGP 195
IGP
Sbjct: 176 HTRTFNHIGP 185
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 13/117 (11%)
Query: 5 DKERVCVTGAGGYIASWLVKYLL----LKGYMVHGTVRDPCDEKNAHLKKLEGASENLQL 60
D + + +TG G V+ +L K +V+ DE +E ++
Sbjct: 20 DNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSR-----DELKQSEMAMEFNDPRMRF 74
Query: 61 FKTDLLDYEALCAATAGCTGVFHVAC--PVPVGKVPNPEVQLIDPAVVGTKNVLNSC 115
F D+ D E L A G H A VP+ + NP ++ I ++G NV+N+C
Sbjct: 75 FIGDVRDLERLNYALEGVDICIHAAALKHVPIAEY-NP-LECIKTNIMGASNVINAC 129
>pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid
Decarboxylase
Length = 343
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 66/177 (37%), Gaps = 27/177 (15%)
Query: 4 EDKERVCVTGAGGYIASWLVKYLLLKGYMVHGTVRDPCDEKNAHLKKLEGASENLQLFKT 63
+D++R+ +TG G++ S L L G+ V TV D + EN +L
Sbjct: 25 KDRKRILITGGAGFVGSHLTDKLXXDGHEV--TVVDNFFTGRKRNVEHWIGHENFELINH 82
Query: 64 DLLDYEALCAATAGCTGVFHVACPV-PVGKVPNPEVQLIDPAVVGTKNVLNSCXXXXXXX 122
D++ E L ++H+A P P NP ++ + +GT N L
Sbjct: 83 DVV--EPLYIE---VDQIYHLASPASPPNYXYNP-IKTLKTNTIGTLNXLGLA------- 129
Query: 123 XXXXSSIGAVMLNPNWPKGQVMDEECWSDEEFCKATENYYCLAKTIAEIQALEYAKR 179
+GA +L E + D E +E+Y+ I + KR
Sbjct: 130 ----KRVGARLL-------LASTSEVYGDPEVHPQSEDYWGHVNPIGPRACYDEGKR 175
>pdb|1KEP|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KEP|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-Xylose Bound
pdb|1KER|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KER|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Dtdp-D-Glucose Bound
pdb|1KET|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1KET|B Chain B, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase
(Rmlb) From Streptococcus Suis With Thymidine
Diphosphate Bound
pdb|1OC2|A Chain A, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
pdb|1OC2|B Chain B, The Structure Of Nadh In The Dtdp-D-Glucose Dehydratase
(Rmlb) Enzyme
Length = 348
Score = 32.0 bits (71), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Query: 7 ERVCVTGAGGYIASWLVKYLLLKGYMVHGTVRDPCD--EKNAHLKKLEGASENLQLFKTD 64
+ + VTG G+I S V Y+ VH TV D A+L+ + G + ++L D
Sbjct: 5 KNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNKANLEAILG--DRVELVVGD 62
Query: 65 LLDYEALCAATAGCTGVFHVACPVPVGKVPNPEVQLIDPAVVGTKNVLNSC 115
+ D E + A + H A N I +GT +L +
Sbjct: 63 IADAELVDKLAAKADAIVHYAAESHNDNSLNDPSPFIHTNFIGTYTLLEAA 113
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 11 VTGAGGYIASWLVKYLLLKGYMVHGTVR 38
+TG G S+L ++LL KGY VHG R
Sbjct: 6 ITGVTGQDGSYLAEFLLEKGYEVHGIKR 33
>pdb|2C54|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site.
pdb|2C54|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K178r, With Gdp-Beta-L-Gulose And
Gdp-4-Keto-Beta-L-Gulose Bound In Active Site
Length = 379
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Query: 8 RVCVTGAGGYIASWLVKYLLLKGYMVHGTVRDPCDEKNAHLKKLEGASENL---QLFKTD 64
++ +TGAGG+IAS + + L +G+ V + KK E +E++ + D
Sbjct: 31 KISITGAGGFIASHIARRLKHEGHYVIAS----------DWKKNEHMTEDMFCDEFHLVD 80
Query: 65 LLDYEALCAATAGCTGVFHVACPV 88
L E T G VF++A +
Sbjct: 81 LRVMENCLKVTEGVDHVFNLAADM 104
>pdb|1WVG|A Chain A, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
pdb|1WVG|B Chain B, Structure Of Cdp-D-Glucose 4,6-Dehydratase From Salmonella
Typhi
Length = 359
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 7 ERVCVTGAGGYIASWLVKYLLLKGYMVHGTVRD-PCDEKNAHLKKLEGASENLQLFKTDL 65
+RV VTG G+ SWL +L G +V G D P + +L E+ D+
Sbjct: 10 KRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAPTVPSLFEIVRLNDLMES---HIGDI 66
Query: 66 LDYEALCAATAGCTG--VFHVACPVPVGKVPNPEVQLIDPAVVGTKNVLNSC 115
D+E L ++ A VFH+A V ++ V+GT ++L +
Sbjct: 67 RDFEKLRSSIAEFKPEIVFHMAAQPLVRLSYEQPIKTYSTNVMGTVHLLETV 118
>pdb|2C59|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site.
pdb|2C59|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana), With
Gdp-Alpha-D-Mannose And Gdp-Beta-L-Galactose Bound In
The Active Site
Length = 379
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Query: 8 RVCVTGAGGYIASWLVKYLLLKGYMVHGTVRDPCDEKNAHLKKLEGASENL---QLFKTD 64
++ +TGAGG+IAS + + L +G+ V + KK E +E++ + D
Sbjct: 31 KISITGAGGFIASHIARRLKHEGHYVIAS----------DWKKNEHMTEDMFCDEFHLVD 80
Query: 65 LLDYEALCAATAGCTGVFHVACPV 88
L E T G VF++A +
Sbjct: 81 LRVMENCLKVTEGVDHVFNLAADM 104
>pdb|2C5A|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
pdb|2C5A|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
Y174f, With Gdp-Beta-L-Galactose Bound In The Active
Site
Length = 379
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Query: 8 RVCVTGAGGYIASWLVKYLLLKGYMVHGTVRDPCDEKNAHLKKLEGASENL---QLFKTD 64
++ +TGAGG+IAS + + L +G+ V + KK E +E++ + D
Sbjct: 31 KISITGAGGFIASHIARRLKHEGHYVIAS----------DWKKNEHMTEDMFCDEFHLVD 80
Query: 65 LLDYEALCAATAGCTGVFHVACPV 88
L E T G VF++A +
Sbjct: 81 LRVMENCLKVTEGVDHVFNLAADM 104
>pdb|2C5E|A Chain A, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active
Site.
pdb|2C5E|B Chain B, Gdp-Mannose-3', 5' -Epimerase (Arabidopsis Thaliana),
K217a, With Gdp-Alpha-D-Mannose Bound In The Active Site
Length = 379
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 13/84 (15%)
Query: 8 RVCVTGAGGYIASWLVKYLLLKGYMVHGTVRDPCDEKNAHLKKLEGASENL---QLFKTD 64
++ +TGAGG+IAS + + L +G+ V + KK E +E++ + D
Sbjct: 31 KISITGAGGFIASHIARRLKHEGHYVIAS----------DWKKNEHMTEDMFCDEFHLVD 80
Query: 65 LLDYEALCAATAGCTGVFHVACPV 88
L E T G VF++A +
Sbjct: 81 LRVMENCLKVTEGVDHVFNLAADM 104
>pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex
With Nad+
pdb|1EK6|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
pdb|1EK6|B Chain B, Structure Of Human Udp-Galactose 4-Epimerase Complexed
With Nadh And Udp-Glucose
Length = 348
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 7 ERVCVTGAGGYIASWLVKYLLLKGYM------VHGTVRDPCDEKNAHLKKLEGASENLQL 60
E+V VTG GYI S V LL GY+ H R + + E +++
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 61 FKTDLLDYEAL 71
+ D+LD AL
Sbjct: 63 EEMDILDQGAL 73
>pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
pdb|1HZJ|B Chain B, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N-
Acetylglucosamine Within The Active Site
Length = 348
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 7 ERVCVTGAGGYIASWLVKYLLLKGYM------VHGTVRDPCDEKNAHLKKLEGASENLQL 60
E+V VTG GYI S V LL GY+ H R + + E +++
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 61 FKTDLLDYEAL 71
+ D+LD AL
Sbjct: 63 EEMDILDQGAL 73
>pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3K|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3L|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3M|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|A Chain A, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
pdb|1I3N|B Chain B, Molecular Basis For Severe Epimerase-Deficiency
Galactosemia: X-Ray Structure Of The Human V94m-
Substituted Udp-Galactose 4-Epimerase
Length = 348
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Query: 7 ERVCVTGAGGYIASWLVKYLLLKGYM------VHGTVRDPCDEKNAHLKKLEGASENLQL 60
E+V VTG GYI S V LL GY+ H R + + E +++
Sbjct: 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESLRRVQELTGRSVEF 62
Query: 61 FKTDLLDYEAL 71
+ D+LD AL
Sbjct: 63 EEMDILDQGAL 73
>pdb|1NL0|H Chain H, Crystal Structure Of Human Factor Ix Gla Domain In Complex
Of An Inhibitory Antibody, 10c12
pdb|3D69|H Chain H, Crystal Structure Of The Fab Fragment Of An Anti-Factor Ix
Antibody 10c12
pdb|3D69|B Chain B, Crystal Structure Of The Fab Fragment Of An Anti-Factor Ix
Antibody 10c12
Length = 224
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 158 TENYYCLAKTIAEIQALEYAKRGELDIVTVCPSIVIGPMLQP 199
T YYC +IA + L+Y RG + VTV + GP + P
Sbjct: 91 TAVYYCARASIAAARVLDYWGRGTM--VTVSSASTKGPSVFP 130
>pdb|3FEF|A Chain A, Crystal Structure Of Putative Glucosidase Lpld From
Bacillus Subtilis
pdb|3FEF|B Chain B, Crystal Structure Of Putative Glucosidase Lpld From
Bacillus Subtilis
pdb|3FEF|C Chain C, Crystal Structure Of Putative Glucosidase Lpld From
Bacillus Subtilis
pdb|3FEF|D Chain D, Crystal Structure Of Putative Glucosidase Lpld From
Bacillus Subtilis
Length = 450
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 11/79 (13%)
Query: 141 GQVMDEECWSDEEFCKATENYYCLAKTIAEIQALEYAKRGELDIVTVCPSIVIGPML-QP 199
G ++ ECW D FC A + L +T I A G+ + P GP L QP
Sbjct: 235 GYELEGECWRDSVFCSAHRVAFDLFETYGAIPAA-----GDRHLAEFLP----GPYLKQP 285
Query: 200 TINTSSLLLLGFLK-DRTE 217
+ L + F K DR E
Sbjct: 286 EVWKFHLTPISFRKQDRAE 304
>pdb|3BPD|A Chain A, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
pdb|3BPD|B Chain B, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
pdb|3BPD|C Chain C, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
pdb|3BPD|D Chain D, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
pdb|3BPD|E Chain E, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
pdb|3BPD|F Chain F, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
pdb|3BPD|G Chain G, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
pdb|3BPD|H Chain H, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
pdb|3BPD|I Chain I, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
pdb|3BPD|J Chain J, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
pdb|3BPD|K Chain K, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
pdb|3BPD|L Chain L, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
pdb|3BPD|M Chain M, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
pdb|3BPD|N Chain N, Crystal Structure Of An Uncharacterized Protein
(O28723_arcfu) From Archaeoglobus Fulgidus
Length = 100
Score = 28.9 bits (63), Expect = 4.1, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Query: 42 DEKNAHLKKLEGASENLQL-FKTDLLDYEALCAATAGCTGVFHVACPVPVGKV 93
D N HL +++ A+EN+++ + LDYE + GV H V GK+
Sbjct: 35 DGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDXGGVIHSVDEVVAGKI 87
>pdb|3ENK|A Chain A, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
pdb|3ENK|B Chain B, 1.9a Crystal Structure Of Udp-Glucose 4-Epimerase From
Burkholderia Pseudomallei
Length = 341
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 6 KERVCVTGAGGYIASWLVKYLLLKGY--MVHGTVRDPCDEKNAHLKKLEGASENLQLFKT 63
K + VTG GYI S LL GY ++ + + E A ++K+ G + +T
Sbjct: 5 KGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFH--ET 62
Query: 64 DLLDYEALC 72
D+ D AL
Sbjct: 63 DVSDERALA 71
>pdb|3AY3|A Chain A, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|B Chain B, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|C Chain C, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
pdb|3AY3|D Chain D, Crystal Structure Of Glucuronic Acid Dehydrogeanse From
Chromohalobacter Salexigens
Length = 267
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 34/180 (18%), Positives = 68/180 (37%), Gaps = 23/180 (12%)
Query: 8 RVCVTGAGGYIASWLVKYLLLKGYMVHGTVRDPCDEKNAHLKKLEGASENLQLFKTDLLD 67
R+ VTGA G + S + +L G + H + + + + L A + ++ DL D
Sbjct: 4 RLLVTGAAGGVGSAIRPHL---GTLAH-------EVRLSDIVDLGAAEAHEEIVACDLAD 53
Query: 68 YEALCAATAGCTGVFHVACPVPVGKVPNPEVQLIDPAVVGTKNVLNSCXXXXXXXXXXXS 127
+A+ C G+ H+ V P ++ ++G N+ + S
Sbjct: 54 AQAVHDLVKDCDGIIHLGGV----SVERPWNDILQANIIGAYNLYEAARNLGKPRIVFAS 109
Query: 128 SIGAVMLNPNWPKGQVMDEECWSDEEFCKATENYYCLAKTIAEIQALEYAKRGELDIVTV 187
S + P + D E + ++ Y L+K E A Y + +++ + +
Sbjct: 110 SNHTIGYYPRTTR---------IDTEVPRRPDSLYGLSKCFGEDLASLYYHKFDIETLNI 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,994,088
Number of Sequences: 62578
Number of extensions: 334571
Number of successful extensions: 792
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 755
Number of HSP's gapped (non-prelim): 43
length of query: 322
length of database: 14,973,337
effective HSP length: 99
effective length of query: 223
effective length of database: 8,778,115
effective search space: 1957519645
effective search space used: 1957519645
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)