Citrus Sinensis ID: 020754

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320--
Protein Sequence
MEGESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGWPPSP
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHcccHHHHHccccHHcHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHccccccEEEccccccHHHHHHHHHHcccccEEEcccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHHcccHHHHHccccccccccccccHHHHHHHHHccccccEEEcccccccHHHHHHHHHccccccEEEccccccccccHHHHHHccccccccccccccccccccccccccccccHHHHHHHHcccccccccccHHHHHccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHcEEEEcccHcccccHHHHHHHHHHHHHHccccHEEEEEcccccHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccHHEEEccccccccccccccHHHHHHHHHHcccccEEEEccccccHHHHHHHHHccccccEEEccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHccccccccccHHHHHHccccccccHHcEEEEccccccccccccccccc
Coil and Loop (DISEMBL)
megesefrhwdeLIPDALGLIFRNLSLQEVLTVIPGVckswrravigpycwqeidieewsnrcqpdHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAgslqtlrlprsemsDSIVAQIAGRLSAVTFLDlsycskigAPALEAIGKHCKLLVVLCRnmhpldtadklsqdDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALlefldlrgcwdvklddkfmkgnfpnlkvlgpfvmdyyeindwddcsdysdgseYLAWEFLagemgdyddddeiyegmwddegrlEELELRFYdgieedagiygwppsp
Flexible Loop (DISEMBL)
MEGESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDtadklsqddEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMkgnfpnlkvlgpFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIeedagiygwppsp
Low Complexity Region (SEG)
MEGESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAgemgdyddddeiyegmWDDEGRleelelRFYDGIEEDAGIYGWPPSP
Disordered region (IsUnstruct)
******FRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRL*****SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLD******************PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGW****
Disordered Region (DISOPRED)
******F***DELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGWPP**
Disordered Region (DISEMBL)
********HWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGWPPSP
Disordered Region (DISPRO)
******FRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGWPPS*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELRFYDGIEEDAGIYGWPPSP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	322	2.2.26 [Sep-21-2011]
Q9ZPE4	317	F-box protein FBW2 OS=Ara	yes	no	0.968	0.984	0.645	1e-112
Q9M0U9	302	F-box protein SKIP19 OS=A	no	no	0.717	0.764	0.325	1e-23
Q9S9V9	449	Putative F-box/LRR-repeat	no	no	0.742	0.532	0.297	1e-20
Q9FDX1	300	F-box protein SKIP1 OS=Ar	no	no	0.717	0.77	0.315	3e-19
Q9S9V8	246	Putative F-box/LRR-repeat	no	no	0.698	0.914	0.303	6e-16
Q9M0U6	307	Putative F-box/LRR-repeat	no	no	0.692	0.726	0.281	1e-12
Q9M0U8	304	Putative F-box/LRR-repeat	no	no	0.670	0.710	0.275	5e-11
Q9M0U7	309	Putative F-box protein At	no	no	0.711	0.741	0.266	2e-10
Q9M096	301	Putative F-box/LRR-repeat	no	no	0.748	0.800	0.250	2e-10
Q9M2Z5	309	F-box/LRR-repeat protein	no	no	0.633	0.660	0.255	5e-07

>sp|Q9ZPE4|FBW2_ARATH F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1

 Score =  406 bits (1044), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 211/327 (64%), Positives = 253/327 (77%), Gaps = 15/327 (4%)

Query: 1   MEGESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWS 60
           ME + EFRHWDELIPDALGLIF +L LQEVLTV+P VCK+W RAV GPYCWQEIDIE WS
Sbjct: 1   MEEDCEFRHWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELWS 60

Query: 61  NRC-QPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSD 119
           NR  Q DHLDRM+EMLI RS+GSLRKL V+GL ND +FS IA++AGSL+TL++PRS +++
Sbjct: 61  NRFHQSDHLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRSGLTN 120

Query: 120 SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDE 179
           S V  +A +LS++TFLDLSYC KIG  A++AIGKHCK L   CRNMHPLD A  +S DDE
Sbjct: 121 SGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDE 180

Query: 180 ANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN 239
           A AIA+TMPKLKRLE+AYH +STE VLKILS C  LEFL+LRGCWDV+LD+KF K  FP+
Sbjct: 181 AYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEKFPD 240

Query: 240 LKVLGPFVMDYYE-INDWDD-CSDY-SDGSEYLAWEFLA-GEMGDYDDDDEIYEGMWDDE 295
           +KVLGP V+ +Y+ INDW+D CSDY SDGS+YLAWEF   G MG++ +D+  +E  WDD 
Sbjct: 241 MKVLGPRVIGFYDMINDWEDCCSDYFSDGSDYLAWEFFEDGVMGEFYEDE--FEHGWDDN 298

Query: 296 GRLEELELRFYDGIEEDAGIYGWPPSP 322
              E   L        D   + WPPSP
Sbjct: 299 FYAENAVL--------DMEPHIWPPSP 317

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0U9|SKI19_ARATH F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1

 Score =  110 bits (276), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 123/240 (51%), Gaps = 9/240 (3%)

Query: 6   EFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQP 65
           E  +W EL P+    I   L   E+L     VC+SWRR    P  W++ID+    +    
Sbjct: 15  ESTNWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNLGDLDDM 74

Query: 66  DH-LDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPR-SEMSDSIVA 123
           D+ L+ M    + RS G L  + +       + + IA  + +L++LRL R S+++D    
Sbjct: 75  DYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQITDDGFV 134

Query: 124 QIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI 183
           +   +L  +  L+LSYCS     +L  +G+ C  +  L  N HP     +   DD+A AI
Sbjct: 135 EAVVKL-PLEELELSYCS-FSVESLRVVGQCCLNMKTLKLNKHP-----QKENDDDALAI 187

Query: 184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVL 243
           A TMPKL+ L++  + +S   +  IL +C+ LE LDLR C++V L     K  F ++KV+
Sbjct: 188 AETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNLVGDLQKRCFESVKVV 247

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9V9|FBL23_ARATH Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=4 SV=1

 Score =  100 bits (250), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 72/242 (29%), Positives = 119/242 (49%), Gaps = 3/242 (1%)

Query: 4   ESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRC 63
           + + R+W EL       I   L   E+L     VCK W R    P  W++IDI+  ++R 
Sbjct: 175 DKKLRNWAELPSKLTSSILLRLGAIEILQNAQKVCKPWHRVCKDPSMWRKIDIDNRNDRA 234

Query: 64  QPDH-LDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRS-EMSDSI 121
              + L+ M    + RS G L ++ +     + +   IA+ + +L++L L R   ++D  
Sbjct: 235 AFKYDLESMCRHAVDRSHGGLIEIEIWYYGTNDLIMYIADRSSNLKSLGLVRCFPITDEG 294

Query: 122 VAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN 181
           VA+   ++  + +L++SYC   G  +L  IG+ C  L  L  N  P         DD A 
Sbjct: 295 VAKAVSKVPLLEYLEVSYCLFSGE-SLRDIGRSCPNLKTLKLNRAPEIMFSNSGFDDNAK 353

Query: 182 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLK 241
           AIA +MP+L+ L++  + ++ + +  IL  C  LE LDLR C+++ L     K  F  +K
Sbjct: 354 AIAESMPELRHLQLLGNGLTNKGLNAILDGCPHLEHLDLRQCFNINLVGDLKKRCFERIK 413

Query: 242 VL 243
            L
Sbjct: 414 DL 415

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FDX1|SKIP1_ARATH F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKIP1 PE=1 SV=1

 Score = 96.3 bits (238), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 81/257 (31%), Positives = 120/257 (46%), Gaps = 26/257 (10%)

Query: 10  WDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEW-SNRCQPDHL 68
           W  L P+ L  I   L++QE+ T    V KSW      PY W   D+E W  +  +  HL
Sbjct: 8   WGGLAPEILINIISRLTIQELWTGPMFVQKSWLTVCRDPYLWSIFDLEPWFDSYPESTHL 67

Query: 69  ---------DRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRS-EMS 118
                    D M+  ++  S G L K+ V    +D   S  A+   +LQ L +  S  ++
Sbjct: 68  WSPEFEQKVDLMLRSVVDWSEGGLTKIRVRHC-SDHALSYAADRCPNLQVLAIRSSPNVT 126

Query: 119 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH----------PL 168
           D+ + +IA R  ++  LD+SYC +I    L  IG++C  L +L RN+           P 
Sbjct: 127 DASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDWSSRHIGSVPT 186

Query: 169 DTADKLSQ--DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 226
           +  D   Q  D EA+AI   M  L+ LE+ +  +S + +  I   C  LE+LDL GC  V
Sbjct: 187 EYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFGC--V 244

Query: 227 KLDDKFMKGNFPNLKVL 243
            L  + +  N   LK L
Sbjct: 245 HLSSRDITSNVSRLKWL 261

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9S9V8|FBL9_ARATH Putative F-box/LRR-repeat protein 9 OS=Arabidopsis thaliana GN=FBL9 PE=4 SV=1

 Score = 85.1 bits (209), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 109/234 (46%), Gaps = 9/234 (3%)

Query: 6   EFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQP 65
           E+R+W EL P+    I   L   E+L     VCKSWRR    P  W++IDI    N    
Sbjct: 17  EYRNWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVNS 76

Query: 66  DHLDRMVEMLITR----SSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPR-SEMSDS 120
             L  ++E L  R    S G L ++ +  L N    + IA+ + +L+ L +   + +   
Sbjct: 77  VELFYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAPVLSR 136

Query: 121 IVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA 180
            V + A +L  +  LD++Y S I    L+ +G+ C  L  L  N     T D    D  A
Sbjct: 137 GVVEAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNC----TGDVKCCDKVA 192

Query: 181 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK 234
            AIA TMP L+ L++  + +S   +  IL  C  L+ L L  C ++ +    +K
Sbjct: 193 LAIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGLHQCLNINIVGDIVK 246

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0U6|FBL22_ARATH Putative F-box/LRR-repeat protein 22 OS=Arabidopsis thaliana GN=FBL22 PE=4 SV=1

 Score = 74.3 bits (181), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 8/231 (3%)

Query: 1   MEGESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWS 60
           M+GE +  +W EL PD L  I   LS  E+L     VC+SWRR    P  W+ ID+    
Sbjct: 18  MKGEEKPSNWAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPLIWRRIDMRNLR 77

Query: 61  NRCQPDHLDRMVEMLITRSSGSLRKLCVSG--LHNDMMFSLIAENAGSLQTLRLPRSEMS 118
                  ++     ++  S G L +  +         + + +AE + +L+ LR+   +++
Sbjct: 78  RLYCIYAMEACCRHVVDLSQGGLLEFNIDQWRFQTTSLLNYMAERSSNLRRLRVKGGQIT 137

Query: 119 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ-D 177
              + +   +L  +  L+L YCS I     + IG+ C  L    + +  +     L++ D
Sbjct: 138 SVGIFEAIVKLPLLEELELLYCS-IEEEHFKTIGQACPNL----KTLKLVGFWSHLNESD 192

Query: 178 DEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKL 228
           ++A AIA TMP L  L++  + ++   +  IL  C  LE LDLR C+++ L
Sbjct: 193 NDALAIADTMPGLLHLQLISNGLTNIGLNAILDGCPHLECLDLRQCFNINL 243

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0U8|FBL21_ARATH Putative F-box/LRR-repeat protein 21 OS=Arabidopsis thaliana GN=FBL21 PE=4 SV=1

 Score = 68.9 bits (167), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 107/240 (44%), Gaps = 24/240 (10%)

Query: 6   EFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQP 65
           E R+W +L P+    I   LSL ++L     VCK WRR    P  W++I+  +    C  
Sbjct: 42  ERRNWVDLPPELTTSILLRLSLTDILDNAQKVCKEWRRICKDPSMWRKINTRD----CLM 97

Query: 66  DHLD--RMVEMLITRSSGSLRKLCV-SGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIV 122
            + D   M   ++  S G L ++ V     +D + S I +       L +    ++   V
Sbjct: 98  YNFDFVSMCRHIVDLSQGGLLEINVDEHFLSDSLLSYITDRNLRSLGLGMCFPRVTKLGV 157

Query: 123 AQIAGRLSAVTFLDLSY-CSKIGAPALEAIGKHCKLLVVLCRNM-------------HPL 168
                ++  +  L++++ C K+    L+AIG  C  L  L  N              + L
Sbjct: 158 VNAIAKIPLLETLEVTHSCIKLD---LKAIGHACPQLKTLKLNSLGRLWPASDKYDSNVL 214

Query: 169 DTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKL 228
           D    L  DD+A AIA +MPKL  L++  + ++   +  IL  C  LE LD+R C+ + L
Sbjct: 215 DDMGPLECDDDALAIAESMPKLHHLQLMANRLTNTGLNAILDGCPHLEHLDVRKCFRISL 274

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M0U7|FB221_ARATH Putative F-box protein At4g05475 OS=Arabidopsis thaliana GN=At4g05475 PE=4 SV=2

 Score = 67.4 bits (163), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 116/248 (46%), Gaps = 19/248 (7%)

Query: 9   HWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHL 68
           +W +L P+    I   LS+ ++L     +C++WRR    P  W++I++ +    C     
Sbjct: 39  NWVDLPPELTTSILLRLSVTDILDNARKLCRAWRRICKDPSMWRKINLRD----CLMYEF 94

Query: 69  D--RMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSE-MSDSIVAQI 125
           D   M   ++  S G L ++ +    +D + S I + + +L++L +   E M++  V   
Sbjct: 95  DFESMCRHIVDLSQGGLLEINIEHFVSDSLLSYIVDRSCNLKSLGISIYEPMTNKGVMNG 154

Query: 126 AGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ--------- 176
             +L  +  L + + S      L+AIG  C  L  L  N    + A  +SQ         
Sbjct: 155 IEKLPLLETLVIFHSSI--KLDLKAIGHACPQLKTLKLNSLGSELAHDISQVGYIPLLEC 212

Query: 177 DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALL-EFLDLRGCWDVKLDDKFMKG 235
           DD+A AIA +MPKL+ L++  + ++   +  IL  C  L E LD+R C+++ L     K 
Sbjct: 213 DDDALAIAESMPKLRHLQLMGNGLTNTGLNAILDGCPHLEEHLDVRKCFNINLVGNLEKR 272

Query: 236 NFPNLKVL 243
               +K L
Sbjct: 273 CMKRIKEL 280

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M096|FBL19_ARATH Putative F-box/LRR-repeat protein 19 OS=Arabidopsis thaliana GN=FBL19 PE=4 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 114/271 (42%), Gaps = 30/271 (11%)

Query: 3   GESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEE---- 58
           G   +  W EL  + L  IF  LS ++       V K+W  A   P      D+E     
Sbjct: 13  GSGLYPDWSELTRECLLDIFSRLSQEQRWIGPMLVSKNWMNACYDPTLNTIFDLETRFLS 72

Query: 59  -------WSNRCQPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLR 111
                  W+   + D +D  +  ++ RS G L ++ +     +   S  AE   +L+ L 
Sbjct: 73  FPESINWWTPEFE-DKVDSFLRSVVDRSEGGLTEIRIRHC-TERSLSYAAERCPNLEVLW 130

Query: 112 LPR-SEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM----- 165
           +     ++D+ + +IA     +  LD+SY   I   +L  +G+ C+ L +L RN+     
Sbjct: 131 IKNCPNVTDASMEKIAMNCPNLRELDISYSYGITHESLITLGRSCQNLKILKRNLLPRLG 190

Query: 166 -------HPLDTADKLSQ--DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLE 216
                   PLD      +  + EA  I   M +LK LE+ Y  ++   +  +   C+ LE
Sbjct: 191 PSLPTIVAPLDYLATFPRYGNIEARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLE 250

Query: 217 FLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 247
           ++DLRGC  +   D  +  N   LK L   +
Sbjct: 251 YMDLRGCISLTRSD--INTNTSGLKNLTEII 279

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2Z5|FBL53_ARATH F-box/LRR-repeat protein At3g48880 OS=Arabidopsis thaliana GN=At3g48880 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 104/247 (42%), Gaps = 43/247 (17%)

Query: 1   MEGESE---FRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIE 57
           ME E E    R W+EL  D L  IF+  S+ E+ + +  VC+ WR A   P  W+ +D+ 
Sbjct: 1   MEEEYESRRLRRWEELDTDILVRIFQKFSVFELTSGLAHVCRGWRAACCDPILWKTVDLS 60

Query: 58  E--------------WSNRCQPDHLDRMVEMLITRSSGSLRKLC--VSGLHNDMMFSLIA 101
                          +  R   + L R++++ +  S GS R L    +   +D   +  A
Sbjct: 61  NMRSSFIKIPLEPYVYVERRSDEALTRILKLSMNLSGGSTRTLIFHFNLFLSDDQLTYTA 120

Query: 102 ENAGSLQTLRLP------RSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPA--LEAIGK 153
           E    L+ + LP      ++ +  +I  +I   L ++T         I  P   L  I K
Sbjct: 121 ERCPGLRRVVLPAWNRIKKTGICKAI--RIWKDLESLTM------PSIANPPYLLTEIAK 172

Query: 154 HCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCA 213
           +CK    L + M P +          AN + + +P +K L +    I  E ++KIL    
Sbjct: 173 NCKNFKEL-KIMGPFEVFF-------ANTLITCLPNIKTLSIRCSAIKREALMKILDGLP 224

Query: 214 LLEFLDL 220
            LE L++
Sbjct: 225 SLEVLNI 231

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
224063261	321	predicted protein [Populus trichocarpa]	0.990	0.993	0.746	1e-131
356508073	321	PREDICTED: F-box protein FBW2-like isofo	0.993	0.996	0.718	1e-122
255545780	329	ubiquitin-protein ligase, putative [Rici	0.996	0.975	0.693	1e-120
449436998	318	PREDICTED: F-box protein FBW2-like [Cucu	0.987	1.0	0.673	1e-119
225467167	317	PREDICTED: F-box protein FBW2 isoform 1	0.984	1.0	0.670	1e-117
297813231	317	F-box family protein [Arabidopsis lyrata	0.968	0.984	0.642	1e-111
18413178	317	F-box protein FBW2 [Arabidopsis thaliana	0.968	0.984	0.645	1e-111
359492882	296	PREDICTED: F-box protein FBW2 [Vitis vin	0.894	0.972	0.652	1e-106
302141985	292	unnamed protein product [Vitis vinifera]	0.822	0.907	0.698	1e-100
242065902	365	hypothetical protein SORBIDRAFT_04g02735	0.981	0.865	0.594	4e-99

>gi|224063261|ref|XP_002301066.1| predicted protein [Populus trichocarpa] gi|222842792|gb|EEE80339.1| predicted protein [Populus trichocarpa]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 242/324 (74%), Positives = 272/324 (83%), Gaps = 5/324 (1%)

Query: 1   MEGESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWS 60
           ME   E+R WDELIPDALGLIFRNLSLQE+LT++P VCKSW RAV GPYCWQEI+IEEWS
Sbjct: 1   MEEGDEYRRWDELIPDALGLIFRNLSLQEILTMVPRVCKSWSRAVSGPYCWQEINIEEWS 60

Query: 61  NRCQPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDS 120
            RC PDHLDRM++MLITRS GSLRKLCVSGLHND  FS +A++AGSLQTLR+PRS++ DS
Sbjct: 61  TRCHPDHLDRMLQMLITRSCGSLRKLCVSGLHNDTNFSFLADHAGSLQTLRIPRSDIGDS 120

Query: 121 IVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA 180
           IV QIAGRLS VTFLD+SYC+KI   ALEAIGKHCKLLV LCRNMHPLDT    +QDDEA
Sbjct: 121 IVEQIAGRLSTVTFLDVSYCNKISGRALEAIGKHCKLLVGLCRNMHPLDTEGLEAQDDEA 180

Query: 181 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL 240
            AIA+TMPKLKRLEMAYH++STE +L+ILSSC  LEF+DLRGCW+V LD+KF K  F  L
Sbjct: 181 YAIATTMPKLKRLEMAYHLVSTESLLQILSSCTNLEFMDLRGCWNVNLDNKFFKEKFQKL 240

Query: 241 KVLGPFVM-DYYEINDW-DDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRL 298
            VLGP VM DYYE NDW +DCS+YSD S+YLAW FLA   G   DDDE Y+ MWDDEGRL
Sbjct: 241 TVLGPLVMEDYYEANDWEEDCSEYSDDSDYLAWGFLA-GDGGDYDDDESYDEMWDDEGRL 299

Query: 299 EELELRFYDGIEEDAGIYGWPPSP 322
           EELELRFY+G   DAG+YGWPPSP
Sbjct: 300 EELELRFYEGA--DAGLYGWPPSP 321

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508073|ref|XP_003522785.1| PREDICTED: F-box protein FBW2-like isoform 1 [Glycine max] gi|356508075|ref|XP_003522786.1| PREDICTED: F-box protein FBW2-like isoform 2 [Glycine max]

 Score =  443 bits (1140), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/323 (71%), Positives = 262/323 (81%), Gaps = 3/323 (0%)

Query: 1   MEGESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWS 60
           ME   EFR W ELIPDALG+IF NLSLQE +TVIP VCKSW  AV GPYCWQEIDI++WS
Sbjct: 1   MEEACEFRSWAELIPDALGVIFTNLSLQERVTVIPRVCKSWANAVTGPYCWQEIDIKDWS 60

Query: 61  NRCQPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDS 120
           NRCQPD LDR++EMLITRSSGSLRKL VSGL  + +F+ IAENA SL TLRLPRS M+DS
Sbjct: 61  NRCQPDQLDRLLEMLITRSSGSLRKLSVSGLQTESIFTFIAENACSLHTLRLPRSSMNDS 120

Query: 121 IVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA 180
           IV QIAGRLS ++FLD+SYC KIG  ALE IGK+CKLL  LCRNMHPLDTA K  QDDEA
Sbjct: 121 IVEQIAGRLSMISFLDVSYCIKIGPYALEMIGKNCKLLEGLCRNMHPLDTASKPFQDDEA 180

Query: 181 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL 240
            AIASTMPKLK LEMAYH+IST  VL+IL++C  LEFLD RGCW V LD  F+K  FP L
Sbjct: 181 YAIASTMPKLKHLEMAYHLISTSGVLQILANCPKLEFLDQRGCWGVTLDHMFLKQKFPKL 240

Query: 241 KVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYD-DDDEIYEGMWDDEGRLE 299
           KVLGPFV+D YE + WDD SD SD SEYLAW+F+AG M +Y  DD + Y+GMWDDEGRL+
Sbjct: 241 KVLGPFVLDTYESDGWDDFSDVSDSSEYLAWDFVAGGMEEYYVDDSDSYDGMWDDEGRLD 300

Query: 300 ELELRFYDGIEEDAGIYGWPPSP 322
           EL+  FY+GI EDAG+Y WPPSP
Sbjct: 301 ELQFGFYEGI-EDAGMY-WPPSP 321

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545780|ref|XP_002513950.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223547036|gb|EEF48533.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 229/330 (69%), Positives = 270/330 (81%), Gaps = 9/330 (2%)

Query: 1   MEGESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWS 60
           ME  SE+R WDELIPDALGLIFRNLSLQE+LTV+P VCKSW RAV GPYCWQEIDIEEWS
Sbjct: 1   MEDGSEYRCWDELIPDALGLIFRNLSLQEILTVVPRVCKSWNRAVSGPYCWQEIDIEEWS 60

Query: 61  NRCQPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDS 120
           N+ QP H+DRM+ MLI RS GSLRKLCVSG+ +D +F  +A++AGSLQTLR PRSE+SDS
Sbjct: 61  NKRQPHHIDRMLRMLIARSCGSLRKLCVSGIPSDAIFPFLADHAGSLQTLRTPRSEISDS 120

Query: 121 IVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA 180
           IV QIAGRLS +TFLD+S+C++I A ALEAIGK+CKLL  LCRN+    +A++L QDDEA
Sbjct: 121 IVEQIAGRLSTITFLDVSHCNEISARALEAIGKNCKLLSGLCRNVELSSSANQLLQDDEA 180

Query: 181 NAIASTMPKLKRLEMAYH-VISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN 239
            AIASTMPKLK LE+AYH +I+TE VLKILSSC  LEFL+L GCWDVK D  F++  FP 
Sbjct: 181 QAIASTMPKLKHLEVAYHLLINTESVLKILSSCPELEFLNLTGCWDVKFDRNFLQEKFPK 240

Query: 240 LKVLGPFVMDYYEINDWDD-CSD----YSDGSEYLAWEFLAGEM--GDYDDDDEIYEGMW 292
           LKV+GP ++DYY++NDW D CS+    YSD SEY AWE  +G+M   D DDDD+ Y+GMW
Sbjct: 241 LKVVGPHLLDYYDMNDWGDYCSEYSDAYSDASEYFAWEIFSGDMEDYDDDDDDDSYDGMW 300

Query: 293 DDEGRLEELELRFYDGIEEDAGIYGWPPSP 322
           DDE RLEELELRFY+G  EDAG+YGWP SP
Sbjct: 301 DDEQRLEELELRFYEG-NEDAGLYGWPLSP 329

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436998|ref|XP_004136279.1| PREDICTED: F-box protein FBW2-like [Cucumis sativus] gi|449524052|ref|XP_004169037.1| PREDICTED: F-box protein FBW2-like isoform 1 [Cucumis sativus] gi|449524054|ref|XP_004169038.1| PREDICTED: F-box protein FBW2-like isoform 2 [Cucumis sativus] gi|449524056|ref|XP_004169039.1| PREDICTED: F-box protein FBW2-like isoform 3 [Cucumis sativus]

 Score =  432 bits (1112), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 217/322 (67%), Positives = 254/322 (78%), Gaps = 4/322 (1%)

Query: 1   MEGESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWS 60
           M   ++ RHWDELIPDALGLIF  LSLQE LTVIP VCKSW +AV+GPYCWQEIDIEEWS
Sbjct: 1   MAEGNDLRHWDELIPDALGLIFSKLSLQEKLTVIPRVCKSWAKAVLGPYCWQEIDIEEWS 60

Query: 61  NRCQPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDS 120
           ++ Q D++DRM++MLI RS GSLRKLCV+GLHN  +F  IA++AGSLQTLRLPRS +SD+
Sbjct: 61  SQRQLDNVDRMLQMLINRSGGSLRKLCVTGLHNSSIFFSIADHAGSLQTLRLPRSNISDA 120

Query: 121 IVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA 180
           +  QIAGRL AVTFLDLSYC KI A  LE+IGK+CK LV +CRN+HPL TA   S DDEA
Sbjct: 121 VAEQIAGRLCAVTFLDLSYCDKISACGLESIGKNCKALVGMCRNLHPLHTAGISSPDDEA 180

Query: 181 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL 240
             IA+TMPKLK LEMAYH +ST+ +L ILSSC  LEFLDLRGC DV+LDDKF+   FP L
Sbjct: 181 YTIAATMPKLKHLEMAYHPLSTKSLLTILSSCPDLEFLDLRGCGDVRLDDKFLAEKFPKL 240

Query: 241 KVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEE 300
           +VLGP V D YE N+WD+ SDYS  SE LAW+F AG    Y DD   ++  WDDEGRLE 
Sbjct: 241 RVLGPLVRDVYERNEWDEGSDYSYISEDLAWDFSAG----YFDDAGSFDDQWDDEGRLEG 296

Query: 301 LELRFYDGIEEDAGIYGWPPSP 322
           LELRFY+G++ED   +GWPPSP
Sbjct: 297 LELRFYEGVDEDNEAFGWPPSP 318

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225467167|ref|XP_002269291.1| PREDICTED: F-box protein FBW2 isoform 1 [Vitis vinifera] gi|359496684|ref|XP_003635300.1| PREDICTED: F-box protein FBW2 isoform 2 [Vitis vinifera] gi|296085646|emb|CBI29445.3| unnamed protein product [Vitis vinifera]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 216/322 (67%), Positives = 256/322 (79%), Gaps = 5/322 (1%)

Query: 1   MEGESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWS 60
           ME   EFR WDELIPDALGLIF NLSLQE+LTVIP VCKSWR+ V+GPYCWQEIDI EWS
Sbjct: 1   MEEGCEFRSWDELIPDALGLIFSNLSLQEILTVIPRVCKSWRKTVMGPYCWQEIDIVEWS 60

Query: 61  NRCQPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDS 120
            R  P++LDRM+EML+TRS+GS RKLCVSGL  D  FS +A++A SLQTLRLPRSE+SD 
Sbjct: 61  QRSSPENLDRMLEMLMTRSAGSHRKLCVSGLPTDASFSFVADHAKSLQTLRLPRSEISDP 120

Query: 121 IVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA 180
           IV ++A +LS +TFLD+SYC K+GAPALEAIGKHCK L  L R MHPL+  DKL+QDDEA
Sbjct: 121 IVEEVAWKLSTITFLDVSYCRKMGAPALEAIGKHCKFLTGLRRIMHPLEIIDKLTQDDEA 180

Query: 181 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL 240
            AIA+TMPKLK LE+AY ++STE VLKIL+SC  LE LD+RGCW+VKLD+K +K  F  L
Sbjct: 181 LAIAATMPKLKHLEIAYLLVSTEPVLKILASCCELELLDVRGCWNVKLDEKLIK-KFSGL 239

Query: 241 KVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEE 300
           KV+GP V+D YE N WDDCS YS  S YLAW+F+AGEM  Y  DDE+Y   W+DE  +++
Sbjct: 240 KVVGPLVIDCYEGNGWDDCSAYSGSSGYLAWDFVAGEMDYY--DDELY-AAWEDES-MDD 295

Query: 301 LELRFYDGIEEDAGIYGWPPSP 322
           LELRFYDG + D   + WP SP
Sbjct: 296 LELRFYDGFDADNAGFDWPQSP 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297813231|ref|XP_002874499.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297320336|gb|EFH50758.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  409 bits (1051), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 210/327 (64%), Positives = 256/327 (78%), Gaps = 15/327 (4%)

Query: 1   MEGESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWS 60
           ME + EFRHWDELIPDALGLIF +L+LQEVLTV+P VCK+W RAV GPYCWQEIDIE WS
Sbjct: 1   MEEDCEFRHWDELIPDALGLIFSHLALQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELWS 60

Query: 61  NRC-QPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSD 119
           NRC Q DHLDRM+EMLI RSSGSLRKL V+GL ND +FS IA++AGSL+TL++PRS +++
Sbjct: 61  NRCHQSDHLDRMLEMLIPRSSGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRSGLTN 120

Query: 120 SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDE 179
           S V  +A +LS++TFLDLSYC K+G  A++A+GKHCK L   CRNMHPLD A  +S DDE
Sbjct: 121 SGVVNVAEKLSSLTFLDLSYCCKVGPEAIQALGKHCKSLREFCRNMHPLDVASVVSHDDE 180

Query: 180 ANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN 239
           A AIA+TMPKLKRLE+AYH +STE VLKILSSC  LEFL+LRGCWDV+LD+KF K  FP+
Sbjct: 181 AYAIANTMPKLKRLEIAYHRVSTEGVLKILSSCIFLEFLELRGCWDVQLDNKFFKEKFPD 240

Query: 240 LKVLGPFVMDYYE-INDWDD-CSDY-SDGSEYLAWEFLA-GEMGDYDDDDEIYEGMWDDE 295
           +KVLGP V+ +Y+ INDW+D CSDY SDGS+YLAWEF   G MG++ +D+  ++  WDD 
Sbjct: 241 MKVLGPRVIGFYDMINDWEDCCSDYFSDGSDYLAWEFFEDGVMGEFYEDE--FDHGWDDN 298

Query: 296 GRLEELELRFYDGIEEDAGIYGWPPSP 322
              +   L        D   + WPPSP
Sbjct: 299 FNADNAIL--------DMEPHIWPPSP 317

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18413178|ref|NP_567343.1| F-box protein FBW2 [Arabidopsis thaliana] gi|30680931|ref|NP_849346.1| F-box protein FBW2 [Arabidopsis thaliana] gi|42572853|ref|NP_974523.1| F-box protein FBW2 [Arabidopsis thaliana] gi|145332987|ref|NP_001078359.1| F-box protein FBW2 [Arabidopsis thaliana] gi|238480265|ref|NP_001154215.1| F-box protein FBW2 [Arabidopsis thaliana] gi|75267749|sp|Q9ZPE4.1|FBW2_ARATH RecName: Full=F-box protein FBW2; AltName: Full=SKP1-interacting partner 18 gi|4325371|gb|AAD17367.1| contains similarity to Medicago truncatula N7 protein (GB:Y17613) [Arabidopsis thaliana] gi|7267540|emb|CAB78022.1| putative protein [Arabidopsis thaliana] gi|21536818|gb|AAM61150.1| F-box protein family, AtFBW2 [Arabidopsis thaliana] gi|27311651|gb|AAO00791.1| F-box protein family, AtFBW2 [Arabidopsis thaliana] gi|30984530|gb|AAP42728.1| At4g08980 [Arabidopsis thaliana] gi|222423880|dbj|BAH19904.1| AT4G08980 [Arabidopsis thaliana] gi|332657303|gb|AEE82703.1| F-box protein FBW2 [Arabidopsis thaliana] gi|332657304|gb|AEE82704.1| F-box protein FBW2 [Arabidopsis thaliana] gi|332657305|gb|AEE82705.1| F-box protein FBW2 [Arabidopsis thaliana] gi|332657306|gb|AEE82706.1| F-box protein FBW2 [Arabidopsis thaliana] gi|332657307|gb|AEE82707.1| F-box protein FBW2 [Arabidopsis thaliana]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 211/327 (64%), Positives = 253/327 (77%), Gaps = 15/327 (4%)

Query: 1   MEGESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWS 60
           ME + EFRHWDELIPDALGLIF +L LQEVLTV+P VCK+W RAV GPYCWQEIDIE WS
Sbjct: 1   MEEDCEFRHWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELWS 60

Query: 61  NRC-QPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSD 119
           NR  Q DHLDRM+EMLI RS+GSLRKL V+GL ND +FS IA++AGSL+TL++PRS +++
Sbjct: 61  NRFHQSDHLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRSGLTN 120

Query: 120 SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDE 179
           S V  +A +LS++TFLDLSYC KIG  A++AIGKHCK L   CRNMHPLD A  +S DDE
Sbjct: 121 SGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDE 180

Query: 180 ANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN 239
           A AIA+TMPKLKRLE+AYH +STE VLKILS C  LEFL+LRGCWDV+LD+KF K  FP+
Sbjct: 181 AYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEKFPD 240

Query: 240 LKVLGPFVMDYYE-INDWDD-CSDY-SDGSEYLAWEFLA-GEMGDYDDDDEIYEGMWDDE 295
           +KVLGP V+ +Y+ INDW+D CSDY SDGS+YLAWEF   G MG++ +D+  +E  WDD 
Sbjct: 241 MKVLGPRVIGFYDMINDWEDCCSDYFSDGSDYLAWEFFEDGVMGEFYEDE--FEHGWDDN 298

Query: 296 GRLEELELRFYDGIEEDAGIYGWPPSP 322
              E   L        D   + WPPSP
Sbjct: 299 FYAENAVL--------DMEPHIWPPSP 317

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492882|ref|XP_002285756.2| PREDICTED: F-box protein FBW2 [Vitis vinifera]

 Score =  391 bits (1005), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 205/314 (65%), Positives = 242/314 (77%), Gaps = 26/314 (8%)

Query: 1   MEGESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWS 60
           ME ES+ R WDELIPDALGLIFRNLSL+E+LTVIP VCKSW  AV GPYCWQEIDI EWS
Sbjct: 1   MEEESDIRRWDELIPDALGLIFRNLSLREILTVIPRVCKSWDEAVKGPYCWQEIDIGEWS 60

Query: 61  NRCQPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDS 120
           ++  P+HLDRM+E+LI RS GSLRKLCV GL ND + S IAE+AGSLQTL+L RSE+SDS
Sbjct: 61  DQ-WPEHLDRMLEILIRRSCGSLRKLCVFGLQNDRLLSFIAEHAGSLQTLQLIRSEISDS 119

Query: 121 IVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA 180
           +V +IAGR S +TFLD+S C+K+G+ ALEAIGK+CK LV LCRNMHPL TA KLSQD+EA
Sbjct: 120 LVEEIAGRFSTLTFLDVSCCNKMGSRALEAIGKNCKSLVGLCRNMHPLTTAGKLSQDEEA 179

Query: 181 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL 240
           +AIA+TMPKLK LEMAYH++ST+ VL+ILS C  LE LDLRGCW V+L+ KF+K  FP L
Sbjct: 180 HAIATTMPKLKHLEMAYHLLSTKSVLEILSCCPELELLDLRGCWHVELNVKFLKEKFPKL 239

Query: 241 KVLGPFVMD---YYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGR 297
           +VLGP V+D   YYE+N+ DD SDY                      DE  +G WDDEG 
Sbjct: 240 RVLGPVVVDYCRYYEMNECDDYSDY----------------------DESSDGTWDDEGG 277

Query: 298 LEELELRFYDGIEE 311
           LEELE+RFY+G  E
Sbjct: 278 LEELEVRFYEGFGE 291

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302141985|emb|CBI19188.3| unnamed protein product [Vitis vinifera]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 188/269 (69%), Positives = 223/269 (82%), Gaps = 4/269 (1%)

Query: 1   MEGESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWS 60
           ME ES+ R WDELIPDALGLIFRNLSL+E+LTVIP VCKSW  AV GPYCWQEIDI EWS
Sbjct: 1   MEEESDIRRWDELIPDALGLIFRNLSLREILTVIPRVCKSWDEAVKGPYCWQEIDIGEWS 60

Query: 61  NRCQPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDS 120
           ++  P+HLDRM+E+LI RS GSLRKLCV GL ND + S IAE+AGSLQTL+L RSE+SDS
Sbjct: 61  DQ-WPEHLDRMLEILIRRSCGSLRKLCVFGLQNDRLLSFIAEHAGSLQTLQLIRSEISDS 119

Query: 121 IVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA 180
           +V +IAGR S +TFLD+S C+K+G+ ALEAIGK+CK LV LCRNMHPL TA KLSQD+EA
Sbjct: 120 LVEEIAGRFSTLTFLDVSCCNKMGSRALEAIGKNCKSLVGLCRNMHPLTTAGKLSQDEEA 179

Query: 181 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL 240
           +AIA+TMPKLK LEMAYH++ST+ VL+ILS C  LE LDLRGCW V+L+ KF+K  FP L
Sbjct: 180 HAIATTMPKLKHLEMAYHLLSTKSVLEILSCCPELELLDLRGCWHVELNVKFLKEKFPKL 239

Query: 241 KVLGPFVMD---YYEINDWDDCSDYSDGS 266
           +VLGP V+D   YYE+N+ DD SDY + S
Sbjct: 240 RVLGPVVVDYCRYYEMNECDDYSDYDETS 268

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242065902|ref|XP_002454240.1| hypothetical protein SORBIDRAFT_04g027350 [Sorghum bicolor] gi|241934071|gb|EES07216.1| hypothetical protein SORBIDRAFT_04g027350 [Sorghum bicolor]

 Score =  367 bits (942), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 192/323 (59%), Positives = 233/323 (72%), Gaps = 7/323 (2%)

Query: 2   EGESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSN 61
           E   E+R W+EL+PDALGLIFRNL LQE+LTV+P VCKSW R V GPYCWQEIDIEEWS 
Sbjct: 48  EDGKEYRCWEELLPDALGLIFRNLPLQEMLTVVPRVCKSWGRVVAGPYCWQEIDIEEWSQ 107

Query: 62  R-CQPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDS 120
           +  +PD + RMVE+LI RS GS R++ VSGL  D +FS I +NA +L+TL +PRSE+SDS
Sbjct: 108 QQSKPDQIGRMVELLIGRSGGSCRRISVSGLPCDPLFSFIGDNARALRTLEIPRSEISDS 167

Query: 121 IVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA 180
           IV  +A RLS VTFLD+S C+KIGA ALEA GKHCK LV L R MHP+D  DK+ Q DEA
Sbjct: 168 IVETVAPRLSNVTFLDISSCTKIGARALEAFGKHCKSLVGLRRVMHPIDLVDKVCQHDEA 227

Query: 181 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL 240
           +AIA +MPKL+ LEM Y +I+TE VL+IL  C  L+FLDLRGCW V  DDKF++   P L
Sbjct: 228 HAIACSMPKLRHLEMGYMLIATEAVLEILGQCRDLKFLDLRGCWTV--DDKFLRERHPGL 285

Query: 241 KVLGPFVMDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEE 300
           +VLGP V D YE + W++CSDYSD S   +WEF+  +      DD   E +WDD   LE 
Sbjct: 286 RVLGPRVDDCYENSYWEECSDYSDDSSIYSWEFMDDDYYAVGSDD---EAIWDDGQGLEN 342

Query: 301 LELRFY-DGIEEDAGIYGWPPSP 322
           LE+RFY  G  E    + WPPSP
Sbjct: 343 LEVRFYGGGFSESFAGFDWPPSP 365

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	322
TAIR|locus:2122308	317	FBW2 "AT4G08980" [Arabidopsis	0.968	0.984	0.629	1.1e-103
TAIR|locus:2115949	302	AT4G05460 "AT4G05460" [Arabido	0.726	0.774	0.333	1.4e-25
TAIR|locus:1005716270	246	AT4G05497 "AT4G05497" [Arabido	0.695	0.910	0.306	8.3e-19
TAIR|locus:2115979	307	AT4G05490 "AT4G05490" [Arabido	0.689	0.723	0.293	4.6e-18
TAIR|locus:2174398	300	SKIP1 "SKP1 interacting partne	0.562	0.603	0.318	8.4e-14
TAIR|locus:2118736	301	AT4G30640 "AT4G30640" [Arabido	0.571	0.611	0.270	2.6e-08
TAIR|locus:2140715	220	AT4G03630 "AT4G03630" [Arabido	0.493	0.722	0.290	1.1e-07
UNIPROTKB|F1NHD2	423	FBXL2 "Uncharacterized protein	0.633	0.482	0.257	2.9e-07
TAIR|locus:2099443	309	AT3G48880 "AT3G48880" [Arabido	0.655	0.682	0.262	2.7e-06
UNIPROTKB|Q58DG6	436	FBXL20 "F-box/LRR-repeat prote	0.518	0.383	0.284	5.4e-06

TAIR|locus:2122308 FBW2 "AT4G08980" [Arabidopsis thaliana (taxid:3702)]

 Score = 1027 (366.6 bits), Expect = 1.1e-103, P = 1.1e-103
 Identities = 206/327 (62%), Positives = 244/327 (74%)

Query:     1 MEGESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWS 60
             ME + EFRHWDELIPDALGLIF +L LQEVLTV+P VCK+W RAV GPYCWQEIDIE WS
Sbjct:     1 MEEDCEFRHWDELIPDALGLIFSHLPLQEVLTVVPRVCKAWNRAVTGPYCWQEIDIELWS 60

Query:    61 NRC-QPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSD 119
             NR  Q DHLDRM+EMLI RS+GSLRKL V+GL ND +FS IA++AGSL+TL++PRS +++
Sbjct:    61 NRFHQSDHLDRMLEMLIPRSAGSLRKLSVTGLRNDSIFSFIAQHAGSLKTLKVPRSGLTN 120

Query:   120 SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDE 179
             S V  +A +LS++TFLDLSYC KIG  A++AIGKHCK L   CRNMHPLD A  +S DDE
Sbjct:   121 SGVVNVAEKLSSLTFLDLSYCCKIGPEAIQAIGKHCKSLREFCRNMHPLDVASVVSHDDE 180

Query:   180 ANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN 239
             A AIA+TMPKLKRLE+AYH +STE VLKILS C  LEFL+LRGCWDV+LD+KF K  FP+
Sbjct:   181 AYAIANTMPKLKRLEIAYHRVSTEGVLKILSCCVFLEFLELRGCWDVQLDNKFFKEKFPD 240

Query:   240 LKVLGPFVMDYYE-INDWDDC-SDY-SDGSEYLAWEFLAXXXXXXXXXXXXXXXXWDDEG 296
             +KVLGP V+ +Y+ INDW+DC SDY SDGS+YLAWEF                  WDD  
Sbjct:   241 MKVLGPRVIGFYDMINDWEDCCSDYFSDGSDYLAWEFFEDGVMGEFYEDEFEHG-WDDN- 298

Query:   297 RXXXXXXRFY-DGIEEDAGIYGWPPSP 322
                     FY +    D   + WPPSP
Sbjct:   299 --------FYAENAVLDMEPHIWPPSP 317

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010608 "posttranscriptional regulation of gene expression" evidence=IMP

GO:0010629 "negative regulation of gene expression" evidence=IMP

TAIR|locus:2115949 AT4G05460 "AT4G05460" [Arabidopsis thaliana (taxid:3702)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 82/246 (33%), Positives = 127/246 (51%)

Query:     1 ME-GESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEW 59
             ME GES   +W EL P+    I   L   E+L     VC+SWRR    P  W++ID+   
Sbjct:    11 MEVGEST--NWTELPPELTSAILHRLGAIEILENAQKVCRSWRRVCKDPSMWRKIDMHNL 68

Query:    60 SNRCQPDH-LDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPR-SEM 117
              +    D+ L+ M    + RS G L  + +       + + IA  + +L++LRL R S++
Sbjct:    69 GDLDDMDYNLEIMCRHAVDRSQGGLVDIGIWYFGTVDLLNYIAHRSSNLRSLRLIRCSQI 128

Query:   118 SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQD 177
             +D    +   +L  +  L+LSYCS     +L  +G+ C  +  L  N HP     +   D
Sbjct:   129 TDDGFVEAVVKLP-LEELELSYCS-FSVESLRVVGQCCLNMKTLKLNKHP-----QKEND 181

Query:   178 DEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNF 237
             D+A AIA TMPKL+ L++  + +S   +  IL +C+ LE LDLR C++V L     K  F
Sbjct:   182 DDALAIAETMPKLRHLQLCGNGLSDTGLNAILDNCSNLEHLDLRRCFNVNLVGDLQKRCF 241

Query:   238 PNLKVL 243
              ++KV+
Sbjct:   242 ESVKVV 247

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:1005716270 AT4G05497 "AT4G05497" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 72/235 (30%), Positives = 110/235 (46%)

Query:     6 EFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQP 65
             E+R+W EL P+    I   L   E+L     VCKSWRR    P  W++IDI    N    
Sbjct:    17 EYRNWAELPPELTSSILLRLGAIEILQNAQRVCKSWRRVCQDPSMWRKIDIRIKENLVNS 76

Query:    66 DHLDRMVEMLITR----SSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSE--MSD 119
               L  ++E L  R    S G L ++ +  L N    + IA+ + +L+ L +      +S 
Sbjct:    77 VELFYVIEPLCCRAVDLSQGGLLEINIDYLVNTSFLNYIADRSSNLRRLGVVDCAPVLSR 136

Query:   120 SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDE 179
              +V + A +L  +  LD++Y S I    L+ +G+ C  L  L  N     T D    D  
Sbjct:   137 GVV-EAAMKLPLLEELDITYKSSIREQELKVVGQSCPNLRTLKLNC----TGDVKCCDKV 191

Query:   180 ANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK 234
             A AIA TMP L+ L++  + +S   +  IL  C  L+ L L  C ++ +    +K
Sbjct:   192 ALAIAETMPGLRHLQLFRNGLSETGLNAILEGCPHLKNLGLHQCLNINIVGDIVK 246

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2115979 AT4G05490 "AT4G05490" [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 68/232 (29%), Positives = 112/232 (48%)

Query:     1 MEGESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWS 60
             M+GE +  +W EL PD L  I   LS  E+L     VC+SWRR    P  W+ ID+    
Sbjct:    18 MKGEEKPSNWAELPPDLLSSILLRLSPLEILENARKVCRSWRRVSKDPLIWRRIDMRNLR 77

Query:    61 NRCQPDHLDRMVEMLITRSSGSLRKLCVSG--LHNDMMFSLIAENAGSLQTLRLPRSEMS 118
                    ++     ++  S G L +  +         + + +AE + +L+ LR+   +++
Sbjct:    78 RLYCIYAMEACCRHVVDLSQGGLLEFNIDQWRFQTTSLLNYMAERSSNLRRLRVKGGQIT 137

Query:   119 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ-D 177
                + +   +L  +  L+L YCS I     + IG+ C  L    + +  +     L++ D
Sbjct:   138 SVGIFEAIVKLPLLEELELLYCS-IEEEHFKTIGQACPNL----KTLKLVGFWSHLNESD 192

Query:   178 DEANAIASTMPKLKRLEMAYHVISTEIVLK-ILSSCALLEFLDLRGCWDVKL 228
             ++A AIA TMP L  L++  + + T I L  IL  C  LE LDLR C+++ L
Sbjct:   193 NDALAIADTMPGLLHLQLISNGL-TNIGLNAILDGCPHLECLDLRQCFNINL 243

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2174398 SKIP1 "SKP1 interacting partner 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 8.4e-14, P = 8.4e-14
 Identities = 63/198 (31%), Positives = 97/198 (48%)

Query:    59 WSNRCQPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRS-EM 117
             WS   +   +D M+  ++  S G L K+ V    +D   S  A+   +LQ L +  S  +
Sbjct:    68 WSPEFE-QKVDLMLRSVVDWSEGGLTKIRVRHC-SDHALSYAADRCPNLQVLAIRSSPNV 125

Query:   118 SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM------H----P 167
             +D+ + +IA R  ++  LD+SYC +I    L  IG++C  L +L RN+      H    P
Sbjct:   126 TDASMTKIAFRCRSLKELDISYCHEISHDTLVMIGRNCPNLRILKRNLMDWSSRHIGSVP 185

Query:   168 LDTADKLSQDD--EANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD 225
              +  D   QD   EA+AI   M  L+ LE+ +  +S + +  I   C  LE+LDL GC  
Sbjct:   186 TEYLDACPQDGDTEADAIGKHMINLEHLEIQFSRLSVKGLASICEGCPKLEYLDLFGC-- 243

Query:   226 VKLDDKFMKGNFPNLKVL 243
             V L  + +  N   LK L
Sbjct:   244 VHLSSRDITSNVSRLKWL 261

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0019005 "SCF ubiquitin ligase complex" evidence=IDA

GO:0007165 "signal transduction" evidence=RCA

GO:0009755 "hormone-mediated signaling pathway" evidence=RCA

TAIR|locus:2118736 AT4G30640 "AT4G30640" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 2.6e-08, P = 2.6e-08
 Identities = 55/203 (27%), Positives = 94/203 (46%)

Query:    56 IEEWSNRCQPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRS 115
             I  W+   + D +D  +  ++ RS G L ++ +     +   S  AE   +L+ L +   
Sbjct:    77 INWWTPEFE-DKVDSFLRSVVDRSEGGLTEIRIRHC-TERSLSYAAERCPNLEVLWIKNC 134

Query:   116 -EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP-----LD 169
               ++D+ + +IA     +  LD+SY   I   +L  +G+ C+ L +L RN+ P     L 
Sbjct:   135 PNVTDASMEKIAMNCPNLRELDISYSYGITHESLITLGRSCQNLKILKRNLLPRLGPSLP 194

Query:   170 TA----DKLSQ-----DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDL 220
             T     D L+      + EA  I   M +LK LE+ Y  ++   +  +   C+ LE++DL
Sbjct:   195 TIVAPLDYLATFPRYGNIEARIIGKYMTQLKHLEIRYSTLTARGLDSVCKGCSNLEYMDL 254

Query:   221 RGCWDVKLDDKFMKGNFPNLKVL 243
             RGC  +   D  +  N   LK L
Sbjct:   255 RGCISLTRSD--INTNTSGLKNL 275

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

TAIR|locus:2140715 AT4G03630 "AT4G03630" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 47/162 (29%), Positives = 77/162 (47%)

Query:    68 LDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSI-VAQIA 126
             L RM+   +  S G   ++ +     D + + IA+ + +L+ L L + +    + +   A
Sbjct:    25 LGRMMCHAVALSQGGCVEINIEHFGTDSLLTYIADRSSNLRHLGLAKCDQITGMGLFTEA 84

Query:   127 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAST 186
              +L  +  L+LSYC  I    LEAIG  C  L  L  N          + D +A  IA  
Sbjct:    85 MKLPLLEDLELSYCL-IKGKNLEAIGFACLHLKTLKLNCQGFKFPG-FTYDHDALGIAKR 142

Query:   187 MPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKL 228
             MP+L+ L++  + +S   +  I   C  LE LDLR C+++ L
Sbjct:   143 MPELRCLQLFGNRVSDVGLNAIFDGCPHLEHLDLRQCFNINL 184

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1NHD2 FBXL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 144 (55.7 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 57/221 (25%), Positives = 102/221 (46%)

Query:    20 LIFRNLSLQEVLTVI--PGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHLDRMVEMLIT 77
             L+ R  S  +++T+     V K+W    +    WQ+ID+  +    Q D   R+VE +  
Sbjct:    19 LLLRIFSFLDIVTLCRCAQVSKAWNVLALDGSNWQKIDLFNF----QTDIEGRVVENISK 74

Query:    78 RSSGSLRKLCVSGLH--NDMMFSLIAENAGSLQTLRLPR-SEMSDSIVAQIAGRLSAVTF 134
             R  G LR+L + G H   D      A+N  +++ L L   ++++DS    ++   S +  
Sbjct:    75 RCGGFLRQLSLRGCHVVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKH 134

Query:   135 LDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLE 194
             LDL+ C  I   +L+ + + C+ L  L  N   L   D++++D    A+      LK L 
Sbjct:   135 LDLTSCVAITNSSLKGLSEGCRNLEHL--N---LSWCDQITKDG-IEALVKGCSGLKALF 188

Query:   195 M-AYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK 234
             +     +  E +  I + C  L  L+L+ C  +  D+  +K
Sbjct:   189 LRGCTQLEDEALKHIQNHCHELAILNLQSCTQIS-DEGIVK 228

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0016020 "membrane" evidence=IEA

TAIR|locus:2099443 AT3G48880 "AT3G48880" [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 63/240 (26%), Positives = 98/240 (40%)

Query:     1 MEGESE---FRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIE 57
             ME E E    R W+EL  D L  IF+  S+ E+ + +  VC+ WR A   P  W+ +D+ 
Sbjct:     1 MEEEYESRRLRRWEELDTDILVRIFQKFSVFELTSGLAHVCRGWRAACCDPILWKTVDLS 60

Query:    58 E--------------WSNRCQPDHLDRMVEMLITRSSGSLRKLCVS-GLH-NDMMFSLIA 101
                            +  R   + L R++++ +  S GS R L     L  +D   +  A
Sbjct:    61 NMRSSFIKIPLEPYVYVERRSDEALTRILKLSMNLSGGSTRTLIFHFNLFLSDDQLTYTA 120

Query:   102 ENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAP-ALEAIGKHCKLLVV 160
             E    L+ + LP            A R+       L+  S    P  L  I K+CK    
Sbjct:   121 ERCPGLRRVVLPAWNRIKKTGICKAIRIWK-DLESLTMPSIANPPYLLTEIAKNCKNFKE 179

Query:   161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDL 220
             L + M P +          AN + + +P +K L +    I  E ++KIL     LE L++
Sbjct:   180 L-KIMGPFEVFF-------ANTLITCLPNIKTLSIRCSAIKREALMKILDGLPSLEVLNI 231

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q58DG6 FBXL20 "F-box/LRR-repeat protein 20" [Bos taurus (taxid:9913)]

 Score = 133 (51.9 bits), Expect = 5.4e-06, P = 5.4e-06
 Identities = 50/176 (28%), Positives = 82/176 (46%)

Query:    73 EMLIT--RSSGSLRKLCVSGLHN--DMMFSLIAENAGSLQTLRLPR-SEMSDSIVAQIAG 127
             E LIT  R    L+ LC SG  N  D + + + +N   L+ L + R S+++D     +A 
Sbjct:   237 EGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARCSQLTDVGFTTLAR 296

Query:   128 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTM 187
                 +  +DL  C +I    L  +  HC  L VL  +   L T D +      N  A   
Sbjct:   297 NCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGIRH--LGNG-ACAH 353

Query:   188 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV-KLDDKFMKGNFPNLKV 242
              +L+ +E+    + T+  L+ L SC  LE ++L  C  + +   K ++ + PN+KV
Sbjct:   354 DQLEVIELDNCPLITDASLEHLKSCHSLERIELYDCQQITRAGIKRLRTHLPNIKV 409

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZPE4	FBW2_ARATH	No assigned EC number	0.6452	0.9689	0.9842	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_II0452 SubName- Full=Putative uncharacterized protein; (322 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	322
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	1e-05

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 39/150 (26%), Positives = 59/150 (39%), Gaps = 16/150 (10%)

Query: 103 NAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL 161
           N   L+ L LP S  + D  +  +A     +  LDL  C  I    + A+  +C  L  +
Sbjct: 50  NCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQTI 109

Query: 162 ----CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCAL-LE 216
                RN H       L  D   +A+      L+ +  A   ++ + V ++ S C+  LE
Sbjct: 110 NLGRHRNGH-------LITDVSLSALGKNCTFLQTVGFAGCDVTDKGVWELASGCSKSLE 162

Query: 217 FLDLRGCW---DVKLDDKFMKGNFPNLKVL 243
            L L  C    D  +        FPNL VL
Sbjct: 163 RLSLNNCRNLTDQSIPAILASNYFPNLSVL 192

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	322
KOG4341	483	consensus F-box protein containing LRR [General fu	99.96
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.95
KOG4341	483	consensus F-box protein containing LRR [General fu	99.66
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.35
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	99.33
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.31
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.26
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.2
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.15
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.13
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.05
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.79
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.79
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.75
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.69
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.65
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.61
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.43
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.34
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	98.32
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.31
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.18
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.16
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	98.14
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.89
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.84
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.74
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.73
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.7
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.64
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.64
KOG3864	221	consensus Uncharacterized conserved protein [Funct	97.61
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.51
KOG2997	366	consensus F-box protein FBX9 [General function pre	97.25
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	97.24
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	97.21
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	97.07
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.01
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	96.95
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.92
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	96.81
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.67
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	96.59
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.53
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.52
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.52
PLN03150	623	hypothetical protein; Provisional	96.5
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.46
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.38
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.03
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	96.02
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.96
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	95.9
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.83
KOG0617	264	consensus Ras suppressor protein (contains leucine	95.37
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	95.3
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	95.29
PLN03150	623	hypothetical protein; Provisional	95.28
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	94.89
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	94.43
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	94.37
KOG4308	478	consensus LRR-containing protein [Function unknown	94.27
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	94.16
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	93.58
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	93.5
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	93.06
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	92.75
KOG4308	478	consensus LRR-containing protein [Function unknown	92.66
KOG0472	565	consensus Leucine-rich repeat protein [Function un	92.62
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	92.36
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	91.5
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	91.42
KOG0617	264	consensus Ras suppressor protein (contains leucine	91.31
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	91.13
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	90.77
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	90.29
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	90.08
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	89.55
PF13013	109	F-box-like_2: F-box-like domain	88.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	88.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	88.94
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	87.27
KOG3735	353	consensus Tropomodulin and leiomodulin [Cytoskelet	84.67
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	82.99
KOG4237	498	consensus Extracellular matrix protein slit, conta	82.52
PRK15386	426	type III secretion protein GogB; Provisional	82.4
PF09372	97	PRANC: PRANC domain; InterPro: IPR018272 This pres	82.37
PRK15386	426	type III secretion protein GogB; Provisional	81.97
KOG0472	565	consensus Leucine-rich repeat protein [Function un	80.93

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.96  E-value=2.9e-29  Score=223.30  Aligned_cols=249  Identities=23%  Similarity=0.358  Sum_probs=209.5

Q ss_pred             cCCHHHHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCceeeeccccccccCChhHHHHHHHHHHHhcCCCeeEEEecCC
Q 020754           12 ELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHLDRMVEMLITRSSGSLRKLCVSGL   91 (322)
Q Consensus        12 ~LP~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw~~i~l~~~~~~~~~~~~~~~l~~l~~r~~~~l~~L~l~~~   91 (322)
                      .||+|++.+||++|+.+.+.+ +++||+.|+..|.+...|+++++..+..    +.-.+++..++.|+++.++.|+++||
T Consensus        74 ~LPpEl~lkvFS~LDtksl~r-~a~~c~~~n~~AlD~~~~q~idL~t~~r----Dv~g~VV~~~~~Rcgg~lk~LSlrG~  148 (483)
T KOG4341|consen   74 SLPPELLLKVFSMLDTKSLCR-AAQCCTMWNKLALDGSCWQHIDLFTFQR----DVDGGVVENMISRCGGFLKELSLRGC  148 (483)
T ss_pred             cCCHHHHHHHHHHHhHHHHHH-HHHHHHHhhhhhhccccceeeehhcchh----cCCCcceehHhhhhcccccccccccc
Confidence            599999999999999999999 8999999999999999999999998743    34467889999999999999999998


Q ss_pred             C--ChHHHHHHHHhCCCCCEEecCCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeecccccc
Q 020754           92 H--NDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL  168 (322)
Q Consensus        92 ~--~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l  168 (322)
                      .  .++.+..++.+|||+++|.+.+| .+|+..+..+++.|++|++|++..|..+|+..++.+++.||+|++|++++++.
T Consensus       149 r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~q  228 (483)
T KOG4341|consen  149 RAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQ  228 (483)
T ss_pred             ccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCch
Confidence            7  48889999999999999999999 99999999999999999999999999999999999999999999999987753


Q ss_pred             C-------------------CCCCCCC-chHHHHHHhcCCCCCEEEecCc-ccCHHHHHHHHhcCCCCCEEeecCCCCcC
Q 020754          169 D-------------------TADKLSQ-DDEANAIASTMPKLKRLEMAYH-VISTEIVLKILSSCALLEFLDLRGCWDVK  227 (322)
Q Consensus       169 ~-------------------~~~~~~~-~~~~~~l~~~~p~L~~L~L~~~-~i~~~~l~~i~~~~~~L~~L~L~~c~~~~  227 (322)
                      .                   ..||... .+.+..++..++-+..+++..| .+||.++..+...|..|+.|+.++|..++
T Consensus       229 i~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~  308 (483)
T KOG4341|consen  229 ISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDIT  308 (483)
T ss_pred             hhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCc
Confidence            2                   1233322 2234555667888888888776 48999999999999999999999998875


Q ss_pred             CCh-HHHHhcCCCCeeeCC-------------cccCc--ccccccccCCCCCCc
Q 020754          228 LDD-KFMKGNFPNLKVLGP-------------FVMDY--YEINDWDDCSDYSDG  265 (322)
Q Consensus       228 ~~~-~~l~~~~~~Lk~L~~-------------~~~~~--~~~~d~~~c~~~td~  265 (322)
                      ... ..+.++|++|++|.+             +.+++  ++.+|+++|..++|.
T Consensus       309 d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~  362 (483)
T KOG4341|consen  309 DEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG  362 (483)
T ss_pred             hHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh
Confidence            222 456788999999864             12333  677888888888875

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.6e-27  Score=204.16  Aligned_cols=158  Identities=28%  Similarity=0.371  Sum_probs=133.1

Q ss_pred             CCCcccCCHHHHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCceeeeccccccccCChhHHHHHHHHHH----------
Q 020754            7 FRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHLDRMVEMLI----------   76 (322)
Q Consensus         7 ~~~w~~LP~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw~~i~l~~~~~~~~~~~~~~~l~~l~----------   76 (322)
                      ..+|+.||+||+..||+.|..+++++ ++.|||||+.++++..+|+.+|+....-  .|....++++.-+          
T Consensus        95 gv~~~slpDEill~IFs~L~kk~LL~-~~~VC~Rfyr~~~de~lW~~lDl~~r~i--~p~~l~~l~~rgV~v~Rlar~~~  171 (419)
T KOG2120|consen   95 GVSWDSLPDEILLGIFSCLCKKELLK-VSGVCKRFYRLASDESLWQTLDLTGRNI--HPDVLGRLLSRGVIVFRLARSFM  171 (419)
T ss_pred             CCCcccCCHHHHHHHHHhccHHHHHH-HHHHHHHHhhccccccceeeeccCCCcc--ChhHHHHHHhCCeEEEEcchhhh
Confidence            45699999999999999999999999 6999999999999999999999986543  4554444432111          


Q ss_pred             ---------HhcCCCeeEEEecCCC-ChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHH
Q 020754           77 ---------TRSSGSLRKLCVSGLH-NDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAP  146 (322)
Q Consensus        77 ---------~r~~~~l~~L~l~~~~-~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~  146 (322)
                               .-+...+++|+|+... +.+.+..+..+|.+|+.|+|.+..+.|.....+|++ .+|+.|+|+.|++++..
T Consensus       172 ~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n  250 (419)
T KOG2120|consen  172 DQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN-SNLVRLNLSMCSGFTEN  250 (419)
T ss_pred             cCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcc-ccceeeccccccccchh
Confidence                     1123347788887643 677788888999999999999999999999999988 99999999999999999


Q ss_pred             HHHHHHhcCCCcceeecccccc
Q 020754          147 ALEAIGKHCKLLVVLCRNMHPL  168 (322)
Q Consensus       147 ~l~~l~~~c~~L~~L~l~~~~l  168 (322)
                      ++..+..+|+.|..|++++|.+
T Consensus       251 ~~~ll~~scs~L~~LNlsWc~l  272 (419)
T KOG2120|consen  251 ALQLLLSSCSRLDELNLSWCFL  272 (419)
T ss_pred             HHHHHHHhhhhHhhcCchHhhc
Confidence            9999999999999999988754

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.66  E-value=5.3e-17  Score=145.40  Aligned_cols=205  Identities=20%  Similarity=0.272  Sum_probs=132.1

Q ss_pred             HHHHHHHccCChHHHhhhhhhhhHHHHHHhcCC-Cceeeecccccccc----------CChhHHHHHHHHHHHhcCCCee
Q 020754           16 DALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGP-YCWQEIDIEEWSNR----------CQPDHLDRMVEMLITRSSGSLR   84 (322)
Q Consensus        16 eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~-~lw~~i~l~~~~~~----------~~~~~~~~~l~~l~~r~~~~l~   84 (322)
                      ++...+  ++.-..... ++++|+.|+.+..++ ..|..+.+.....-          ..+..-..-++.+ .|.+..++
T Consensus       170 ~l~gc~--~iTd~s~~s-la~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~-~rG~~~l~  245 (483)
T KOG4341|consen  170 ALYGCK--KITDSSLLS-LARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL-QRGCKELE  245 (483)
T ss_pred             hhhcce--eccHHHHHH-HHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH-hccchhhh
Confidence            444444  555556666 799999999999988 88887766632110          0111111112222 22333455


Q ss_pred             EEEecCCC--ChHHHHHHHHhCCCCCEEecCCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCccee
Q 020754           85 KLCVSGLH--NDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL  161 (322)
Q Consensus        85 ~L~l~~~~--~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L  161 (322)
                      .+.+.||.  .+..+..++.+++-+..+++..| .+||..+..++..|..|+.|..++|+.+++..+.+++++|++|+.|
T Consensus       246 ~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l  325 (483)
T KOG4341|consen  246 KLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVL  325 (483)
T ss_pred             hhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEE
Confidence            66666665  35667777777777777777777 7777777777777777777777777777777777777777777777


Q ss_pred             eccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcc-cCHHHHHHHHhcCCCCCEEeecCCCCcCCCh
Q 020754          162 CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDD  230 (322)
Q Consensus       162 ~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~-i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~  230 (322)
                      .+..+..      +++.++..++.++|.|+.+++.+|. +++..+..+..+||.|+.|.+++|..++.++
T Consensus       326 ~l~~c~~------fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~g  389 (483)
T KOG4341|consen  326 ELSGCQQ------FSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEG  389 (483)
T ss_pred             eccccch------hhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhh
Confidence            6543322      4455666677777777777777765 4444466666677777777777777666443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.35  E-value=6.2e-12  Score=120.36  Aligned_cols=140  Identities=31%  Similarity=0.359  Sum_probs=106.6

Q ss_pred             HHhcCCCeeEEEecCCC--ChHHHHHHHHhCCCCCEEecCCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHH
Q 020754           76 ITRSSGSLRKLCVSGLH--NDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIG  152 (322)
Q Consensus        76 ~~r~~~~l~~L~l~~~~--~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~  152 (322)
                      ....+..++.|+++++.  ++..+..++..|++|+.|.+.+| .+++.++..++.+||+|++|++++|..+++.++.+++
T Consensus       238 ~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~  317 (482)
T KOG1947|consen  238 LLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALL  317 (482)
T ss_pred             hhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHH
Confidence            33445778999998765  78899999999999999998888 4899999999999999999999999999999999889


Q ss_pred             hcCCCcceeeccccc-------cCCCCCCCC--chHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCC
Q 020754          153 KHCKLLVVLCRNMHP-------LDTADKLSQ--DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALL  215 (322)
Q Consensus       153 ~~c~~L~~L~l~~~~-------l~~~~~~~~--~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L  215 (322)
                      ++||+|+.|.+....       +.+.++...  +.....++..||+|+++.|.++.+++.+...++.+||+|
T Consensus       318 ~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  318 KNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             HhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            999999888754332       112222111  244556666788888888887776666666677777766

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=99.33  E-value=8.3e-13  Score=84.70  Aligned_cols=46  Identities=26%  Similarity=0.510  Sum_probs=40.6

Q ss_pred             cccCCHHHHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCceeeecc
Q 020754           10 WDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDI   56 (322)
Q Consensus        10 w~~LP~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw~~i~l   56 (322)
                      |..||+||+.+||++|+..|+.+ +++|||+|+.++.++.+|+++.+
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~-~~~vcr~w~~~~~~~~lW~~~~~   46 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLR-LSLVCRRWRRIANDNSLWRRLCL   46 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHH-HTTSSHHHHHHHTCCCHHHHHC-
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHHCChhhhhhhcc
Confidence            78999999999999999999998 79999999999998899998765

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.31  E-value=6.6e-12  Score=120.18  Aligned_cols=146  Identities=26%  Similarity=0.332  Sum_probs=119.9

Q ss_pred             hHHHHHHHHhCCCCCEEecCCC-CCCHHHHHHHHhcCCCccEEeccC-CCCCCHHH--HHHHHhcCCCcceeeccccccC
Q 020754           94 DMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSY-CSKIGAPA--LEAIGKHCKLLVVLCRNMHPLD  169 (322)
Q Consensus        94 ~~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~l~~-c~~i~~~~--l~~l~~~c~~L~~L~l~~~~l~  169 (322)
                      ...+..+...+++|+.|.+.++ .+++.++..++..+++|+.|++++ |..++..+  ...+++.|++|+.|.++.+.. 
T Consensus       177 ~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~-  255 (482)
T KOG1947|consen  177 DKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGL-  255 (482)
T ss_pred             HHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhc-
Confidence            4556666667999999999998 899888889999999999999998 44444433  566888999999997764432 


Q ss_pred             CCCCCCCchHHHHHHhcCCCCCEEEecCcc-cCHHHHHHHHhcCCCCCEEeecCCCCcCCCh-HHHHhcCCCCeeeCC
Q 020754          170 TADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDD-KFMKGNFPNLKVLGP  245 (322)
Q Consensus       170 ~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~-i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~-~~l~~~~~~Lk~L~~  245 (322)
                           +++.++.+++..||+|++|.+.+|. +++.++.+++..|++|++|+|++|..++..+ ..+...|++|+.|..
T Consensus       256 -----isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~  328 (482)
T KOG1947|consen  256 -----VTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL  328 (482)
T ss_pred             -----cCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence                 6778889999889999999998887 8999999999999999999999999885333 344677999988753

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=4.5e-12  Score=109.67  Aligned_cols=157  Identities=20%  Similarity=0.292  Sum_probs=126.2

Q ss_pred             CCCeeEEEecCCC-ChHHHHHHHHhCCCCCEEecCCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCC
Q 020754           80 SGSLRKLCVSGLH-NDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL  157 (322)
Q Consensus        80 ~~~l~~L~l~~~~-~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~  157 (322)
                      |.+|+.|++.|.. .|.....+|+ ..+|+.|+|+.| +++..++..+...|+.|..|+|+.|...++.+-.+++.--++
T Consensus       209 C~kLk~lSlEg~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~  287 (419)
T KOG2120|consen  209 CSKLKNLSLEGLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET  287 (419)
T ss_pred             HHhhhhccccccccCcHHHHHHhc-cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence            6779999998865 5777777775 689999999998 999999999999999999999999987777766666666789


Q ss_pred             cceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcc-cCHHHHHHHHhcCCCCCEEeecCCCCcCCChHH--HH
Q 020754          158 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKF--MK  234 (322)
Q Consensus       158 L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~-i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~--l~  234 (322)
                      |+.|+++.+.-.     .....+..+++.||+|.+|+|+.|. +++ ++...+.+++.|++|.++.|..+  ....  .+
T Consensus       288 l~~LNlsG~rrn-----l~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l  359 (419)
T KOG2120|consen  288 LTQLNLSGYRRN-----LQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDI--IPETLLEL  359 (419)
T ss_pred             hhhhhhhhhHhh-----hhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCC--ChHHeeee
Confidence            999977655432     3345677788899999999999885 666 55555567999999999999988  4433  25


Q ss_pred             hcCCCCeeeCC
Q 020754          235 GNFPNLKVLGP  245 (322)
Q Consensus       235 ~~~~~Lk~L~~  245 (322)
                      ...|.|++|..
T Consensus       360 ~s~psl~yLdv  370 (419)
T KOG2120|consen  360 NSKPSLVYLDV  370 (419)
T ss_pred             ccCcceEEEEe
Confidence            67788999853

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.20  E-value=3.6e-11  Score=106.11  Aligned_cols=89  Identities=24%  Similarity=0.312  Sum_probs=46.8

Q ss_pred             cCCCccEEeccCCCCCCHHHHHHH---HhcCCCcceeeccccccCCCCCCCCchHHHHHHh---cCCCCCEEEecCcccC
Q 020754          128 RLSAVTFLDLSYCSKIGAPALEAI---GKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS---TMPKLKRLEMAYHVIS  201 (322)
Q Consensus       128 ~~~~L~~L~l~~c~~i~~~~l~~l---~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~---~~p~L~~L~L~~~~i~  201 (322)
                      .+|+|+.+.+.. +.|...++.++   ...||+|+.|++..+.++       ..+..++++   .+|+|+.|++++|.+.
T Consensus       183 ~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~DNtft-------~egs~~LakaL~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  183 SHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRDNTFT-------LEGSVALAKALSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             hccccceEEEec-ccccCchhHHHHHHHHhCCcceeeecccchhh-------hHHHHHHHHHhcccchheeecccccccc
Confidence            345666666665 55555554333   235566666655444332       233333332   3455666666666665


Q ss_pred             HHHHHHHHh----cCCCCCEEeecCCC
Q 020754          202 TEIVLKILS----SCALLEFLDLRGCW  224 (322)
Q Consensus       202 ~~~l~~i~~----~~~~L~~L~L~~c~  224 (322)
                      +.+..+++.    ..|.|+.|.+.+|.
T Consensus       255 ~~Ga~a~~~al~~~~p~L~vl~l~gNe  281 (382)
T KOG1909|consen  255 NEGAIAFVDALKESAPSLEVLELAGNE  281 (382)
T ss_pred             cccHHHHHHHHhccCCCCceeccCcch
Confidence            555555543    34566666666664

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.15  E-value=1.1e-10  Score=103.09  Aligned_cols=160  Identities=15%  Similarity=0.140  Sum_probs=113.4

Q ss_pred             CCCeeEEEecCCC----ChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHh------------cCCCccEEeccCCCCC
Q 020754           80 SGSLRKLCVSGLH----NDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAG------------RLSAVTFLDLSYCSKI  143 (322)
Q Consensus        80 ~~~l~~L~l~~~~----~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~------------~~~~L~~L~l~~c~~i  143 (322)
                      +++++.|+|+.-.    .-+.+..+.++|.+|++|.|.+|++...+-..+++            .-|+|+++.... |.+
T Consensus        91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrl  169 (382)
T KOG1909|consen   91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRL  169 (382)
T ss_pred             CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-ccc
Confidence            4579999997522    35566677778999999999999887765544333            247899999887 777


Q ss_pred             CHHHHH---HHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHh---cCCCCCE
Q 020754          144 GAPALE---AIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILS---SCALLEF  217 (322)
Q Consensus       144 ~~~~l~---~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~---~~~~L~~  217 (322)
                      .+.+..   ...+.+|.|+.+++..+.+...|.   .-.+.++ .+||+|+.|+|..|.++..+-.+++.   ..|+|+.
T Consensus       170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~---~al~eal-~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E  245 (382)
T KOG1909|consen  170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV---TALAEAL-EHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE  245 (382)
T ss_pred             ccccHHHHHHHHHhccccceEEEecccccCchh---HHHHHHH-HhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence            666554   445567889999886665433221   1112233 48999999999999998888777765   4478999


Q ss_pred             EeecCCCCcCCCh-----HHHHhcCCCCeeeCC
Q 020754          218 LDLRGCWDVKLDD-----KFMKGNFPNLKVLGP  245 (322)
Q Consensus       218 L~L~~c~~~~~~~-----~~l~~~~~~Lk~L~~  245 (322)
                      |.++.|-.-+ .+     ..+....|+|++|.+
T Consensus       246 l~l~dcll~~-~Ga~a~~~al~~~~p~L~vl~l  277 (382)
T KOG1909|consen  246 LNLGDCLLEN-EGAIAFVDALKESAPSLEVLEL  277 (382)
T ss_pred             eccccccccc-ccHHHHHHHHhccCCCCceecc
Confidence            9999995443 44     234667899999984

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.13  E-value=1.8e-09  Score=97.95  Aligned_cols=136  Identities=21%  Similarity=0.166  Sum_probs=64.8

Q ss_pred             CCCeeEEEecCCCC----hHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHH---hcC-CCccEEeccCCCCCCHHHHHHH
Q 020754           80 SGSLRKLCVSGLHN----DMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIA---GRL-SAVTFLDLSYCSKIGAPALEAI  151 (322)
Q Consensus        80 ~~~l~~L~l~~~~~----~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~---~~~-~~L~~L~l~~c~~i~~~~l~~l  151 (322)
                      ..+++.|+++++.-    ...+..+... ++|++|++++|.+++.++..+.   ..+ ++|+.|++++| .++..+...+
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~~  157 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRN-RLEGASCEAL  157 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCC-cCCchHHHHH
Confidence            44566666665442    1222223333 4566666666666654443322   233 56666666664 4443333222


Q ss_pred             ---HhcCCCcceeeccccccCCCCCCCCchHHHHHH---hcCCCCCEEEecCcccCHHHHHHHH---hcCCCCCEEeecC
Q 020754          152 ---GKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEIVLKIL---SSCALLEFLDLRG  222 (322)
Q Consensus       152 ---~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~---~~~p~L~~L~L~~~~i~~~~l~~i~---~~~~~L~~L~L~~  222 (322)
                         ...+++|+.|++..+.       +.+.+...+.   ..+++|++|+|++|.+++.++..+.   ..+++|++|++++
T Consensus       158 ~~~~~~~~~L~~L~l~~n~-------l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~  230 (319)
T cd00116         158 AKALRANRDLKELNLANNG-------IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD  230 (319)
T ss_pred             HHHHHhCCCcCEEECcCCC-------CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCC
Confidence               2344556666544332       2222222222   1234666666666655554433332   2445566666666


Q ss_pred             CC
Q 020754          223 CW  224 (322)
Q Consensus       223 c~  224 (322)
                      |.
T Consensus       231 n~  232 (319)
T cd00116         231 NN  232 (319)
T ss_pred             Cc
Confidence            53

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.05  E-value=1.9e-08  Score=91.11  Aligned_cols=156  Identities=19%  Similarity=0.164  Sum_probs=106.4

Q ss_pred             CCeeEEEecCCC-ChHHHHHH---HHhC-CCCCEEecCCCCCCHHHHH---HHHhcCCCccEEeccCCCCCCHHHHHHHH
Q 020754           81 GSLRKLCVSGLH-NDMMFSLI---AENA-GSLQTLRLPRSEMSDSIVA---QIAGRLSAVTFLDLSYCSKIGAPALEAIG  152 (322)
Q Consensus        81 ~~l~~L~l~~~~-~~~~l~~l---~~~~-~~L~~L~L~~~~i~~~~l~---~l~~~~~~L~~L~l~~c~~i~~~~l~~l~  152 (322)
                      +.+++|+++++. .+..+..+   ...+ ++|+.|.|.+|.++..+..   .....+++|++|++++ +.+++.++..++
T Consensus       108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~l~  186 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN-NGIGDAGIRALA  186 (319)
T ss_pred             CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC-CCCchHHHHHHH
Confidence            669999998764 33333332   2345 8999999999988854443   3344567899999998 577777776665


Q ss_pred             hcC---CCcceeeccccccCCCCCCCCchHHH---HHHhcCCCCCEEEecCcccCHHHHHHHHhcC----CCCCEEeecC
Q 020754          153 KHC---KLLVVLCRNMHPLDTADKLSQDDEAN---AIASTMPKLKRLEMAYHVISTEIVLKILSSC----ALLEFLDLRG  222 (322)
Q Consensus       153 ~~c---~~L~~L~l~~~~l~~~~~~~~~~~~~---~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~----~~L~~L~L~~  222 (322)
                      +.+   ++|+.|.++.+.       +.+.++.   .....+|+|++|++++|.+++.++..++..+    +.|++|++++
T Consensus       187 ~~l~~~~~L~~L~L~~n~-------i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~  259 (319)
T cd00116         187 EGLKANCNLEVLDLNNNG-------LTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC  259 (319)
T ss_pred             HHHHhCCCCCEEeccCCc-------cChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccC
Confidence            444   589999765443       3334333   2334688999999999999998888887765    7999999999


Q ss_pred             CCCcCCCh-HHH---HhcCCCCeeeCC
Q 020754          223 CWDVKLDD-KFM---KGNFPNLKVLGP  245 (322)
Q Consensus       223 c~~~~~~~-~~l---~~~~~~Lk~L~~  245 (322)
                      |. ++..+ ..+   ...+++|+++..
T Consensus       260 n~-i~~~~~~~l~~~~~~~~~L~~l~l  285 (319)
T cd00116         260 ND-ITDDGAKDLAEVLAEKESLLELDL  285 (319)
T ss_pred             CC-CCcHHHHHHHHHHhcCCCccEEEC
Confidence            95 43222 222   344466777644

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=2.3e-09  Score=97.33  Aligned_cols=164  Identities=23%  Similarity=0.178  Sum_probs=106.7

Q ss_pred             CCCeeEEEecCC--CChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCC
Q 020754           80 SGSLRKLCVSGL--HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL  157 (322)
Q Consensus        80 ~~~l~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~  157 (322)
                      +++++.|+|++-  .+...+..+++.+|+|+.|+|+.|.+....-......++.|+.|.|+.| +++.+.+..++..||+
T Consensus       145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPs  223 (505)
T KOG3207|consen  145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSC-GLSWKDVQWILLTFPS  223 (505)
T ss_pred             CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccC-CCCHHHHHHHHHhCCc
Confidence            677888888763  3566777788899999999999883321111111114588999999998 7789999999999999


Q ss_pred             cceeecccc-----------------ccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHH-----HHHhcCCCC
Q 020754          158 LVVLCRNMH-----------------PLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL-----KILSSCALL  215 (322)
Q Consensus       158 L~~L~l~~~-----------------~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~-----~i~~~~~~L  215 (322)
                      |+.|.+..+                 .+++++....+........++|+|+.|+++.+.|++-...     .....+|+|
T Consensus       224 l~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL  303 (505)
T KOG3207|consen  224 LEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL  303 (505)
T ss_pred             HHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence            999976433                 2344444444444334444788888888888876554332     335567889


Q ss_pred             CEEeecCCCCcCCChHHHHhcCCCCeeeC
Q 020754          216 EFLDLRGCWDVKLDDKFMKGNFPNLKVLG  244 (322)
Q Consensus       216 ~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~  244 (322)
                      ++|++..+.......-.-.+..++|+.|.
T Consensus       304 ~~L~i~~N~I~~w~sl~~l~~l~nlk~l~  332 (505)
T KOG3207|consen  304 EYLNISENNIRDWRSLNHLRTLENLKHLR  332 (505)
T ss_pred             eeeecccCccccccccchhhccchhhhhh
Confidence            99998887543111111134445555554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.79  E-value=1.8e-09  Score=88.97  Aligned_cols=127  Identities=26%  Similarity=0.328  Sum_probs=49.2

Q ss_pred             CCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH
Q 020754          104 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  183 (322)
Q Consensus       104 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l  183 (322)
                      +.++++|+|.++.|+.  +..+...+.+|+.|++++ +.++.  +..+ ..+++|+.|.++.+.+..       - ...+
T Consensus        18 ~~~~~~L~L~~n~I~~--Ie~L~~~l~~L~~L~Ls~-N~I~~--l~~l-~~L~~L~~L~L~~N~I~~-------i-~~~l   83 (175)
T PF14580_consen   18 PVKLRELNLRGNQIST--IENLGATLDKLEVLDLSN-NQITK--LEGL-PGLPRLKTLDLSNNRISS-------I-SEGL   83 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TT-S--S----TT-----TT--EEE--SS---S---------CHHH
T ss_pred             cccccccccccccccc--ccchhhhhcCCCEEECCC-CCCcc--ccCc-cChhhhhhcccCCCCCCc-------c-ccch
Confidence            4467888888886654  445555668888888887 45543  2222 235778888776655421       1 1234


Q ss_pred             HhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCCh--HHHHhcCCCCeeeC
Q 020754          184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLG  244 (322)
Q Consensus       184 ~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~--~~l~~~~~~Lk~L~  244 (322)
                      .+.+|+|++|.|++|.|.+-.-...+..||+|+.|+|.+|+......  ..+...+|+|+.|+
T Consensus        84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            34689999999999987664334445679999999999998664333  45678999999994

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.75  E-value=3e-09  Score=68.37  Aligned_cols=44  Identities=27%  Similarity=0.490  Sum_probs=36.9

Q ss_pred             CcccCCHHHHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCceee
Q 020754            9 HWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQE   53 (322)
Q Consensus         9 ~w~~LP~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw~~   53 (322)
                      .|.+||+|++.+||++|+..+++. +++|||+|+.++.++.+|.+
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~-l~~vsk~~~~~~~~~~~~~~   45 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLR-LSLVSKRWRSLVDSPRLWKK   45 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHH-HCTT-HHHHHHHTTHHHHHH
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHH-HHHHhhHHHHHHcCCCccHH
Confidence            588999999999999999999998 79999999999998777653

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.69  E-value=2e-08  Score=62.02  Aligned_cols=40  Identities=23%  Similarity=0.448  Sum_probs=37.3

Q ss_pred             CCHHHHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCceee
Q 020754           13 LIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQE   53 (322)
Q Consensus        13 LP~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw~~   53 (322)
                      ||+|++..||.+++..++.+ +++|||+|+.++.++.+|+.
T Consensus         1 lP~~ll~~I~~~l~~~d~~~-~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLR-LRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhcChhhhhc
Confidence            79999999999999999998 79999999999998888864

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.65  E-value=5.2e-08  Score=96.61  Aligned_cols=155  Identities=19%  Similarity=0.229  Sum_probs=108.4

Q ss_pred             HhcCCCeeEEEecCCC--ChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhc
Q 020754           77 TRSSGSLRKLCVSGLH--NDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKH  154 (322)
Q Consensus        77 ~r~~~~l~~L~l~~~~--~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~  154 (322)
                      ..+..+|++|+++|-.  .......++..+|+|++|.+.+-.+...-+..+...+|||.+||+|+ +++++-  . -...
T Consensus       118 ~~sr~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl--~-GIS~  193 (699)
T KOG3665|consen  118 EESRQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNL--S-GISR  193 (699)
T ss_pred             HHHHHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCc--H-HHhc
Confidence            3456789999998743  45677888899999999999998776666999999999999999999 456543  1 2234


Q ss_pred             CCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHH--HHHHH---hcCCCCCEEeecCCCCcCCC
Q 020754          155 CKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEI--VLKIL---SSCALLEFLDLRGCWDVKLD  229 (322)
Q Consensus       155 c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~--l~~i~---~~~~~L~~L~L~~c~~~~~~  229 (322)
                      +++|+.|.+..-.+      .....+..+. .+.+|+.|+++...-....  +...+   ..+|+|+.||.+|.. +  +
T Consensus       194 LknLq~L~mrnLe~------e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd-i--~  263 (699)
T KOG3665|consen  194 LKNLQVLSMRNLEF------ESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD-I--N  263 (699)
T ss_pred             cccHHHHhccCCCC------CchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc-h--h
Confidence            57788776543322      1124566676 7999999999986432222  33333   256999999998643 3  3


Q ss_pred             h---HHHHhcCCCCeeeCC
Q 020754          230 D---KFMKGNFPNLKVLGP  245 (322)
Q Consensus       230 ~---~~l~~~~~~Lk~L~~  245 (322)
                      .   ..+....|+|+.+..
T Consensus       264 ~~~le~ll~sH~~L~~i~~  282 (699)
T KOG3665|consen  264 EEILEELLNSHPNLQQIAA  282 (699)
T ss_pred             HHHHHHHHHhCccHhhhhh
Confidence            3   345667788887753

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=2.6e-08  Score=90.63  Aligned_cols=115  Identities=22%  Similarity=0.095  Sum_probs=67.0

Q ss_pred             hCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHH
Q 020754          103 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  182 (322)
Q Consensus       103 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~  182 (322)
                      +..+|+.+.|.++.+...+....++.||+++.|+|+..-.-....+..++..+|+|+.|+++.+.+...--...+     
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~-----  193 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTT-----  193 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccch-----
Confidence            355666677776666665555566667777777777632333455666666777777776655544221111100     


Q ss_pred             HHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020754          183 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  224 (322)
Q Consensus       183 l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~  224 (322)
                        ..+++|+.|.|++|.++-..+..++..||.|+.|.|.++.
T Consensus       194 --~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~  233 (505)
T KOG3207|consen  194 --LLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANE  233 (505)
T ss_pred             --hhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhccc
Confidence              1455666666666666666666666666666666666653

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.43  E-value=1e-07  Score=78.49  Aligned_cols=129  Identities=20%  Similarity=0.289  Sum_probs=53.6

Q ss_pred             CeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCccee
Q 020754           82 SLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL  161 (322)
Q Consensus        82 ~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L  161 (322)
                      .++.|++.+..-. .+..+...+.+|+.|+|++|.|+.-  ..+ ..+++|+.|++++ +.++.-+ ..+.+.||+|++|
T Consensus        20 ~~~~L~L~~n~I~-~Ie~L~~~l~~L~~L~Ls~N~I~~l--~~l-~~L~~L~~L~L~~-N~I~~i~-~~l~~~lp~L~~L   93 (175)
T PF14580_consen   20 KLRELNLRGNQIS-TIENLGATLDKLEVLDLSNNQITKL--EGL-PGLPRLKTLDLSN-NRISSIS-EGLDKNLPNLQEL   93 (175)
T ss_dssp             -----------------S--TT-TT--EEE-TTS--S----TT-----TT--EEE--S-S---S-C-HHHHHH-TT--EE
T ss_pred             ccccccccccccc-cccchhhhhcCCCEEECCCCCCccc--cCc-cChhhhhhcccCC-CCCCccc-cchHHhCCcCCEE
Confidence            4678888875322 2334444578999999999977642  222 3469999999998 8887532 2344678999999


Q ss_pred             eccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHH--HHHHHhcCCCCCEEeecCC
Q 020754          162 CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEI--VLKILSSCALLEFLDLRGC  223 (322)
Q Consensus       162 ~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~--l~~i~~~~~~L~~L~L~~c  223 (322)
                      .++.+.+.-      -..+..+. .+|+|+.|+|.+|.++...  =..++..+|+|+.||-...
T Consensus        94 ~L~~N~I~~------l~~l~~L~-~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen   94 YLSNNKISD------LNELEPLS-SLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             E-TTS---S------CCCCGGGG-G-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred             ECcCCcCCC------hHHhHHHH-cCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence            887665421      11234444 7999999999999876543  2345668999999997653

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.34  E-value=1e-06  Score=92.06  Aligned_cols=128  Identities=21%  Similarity=0.224  Sum_probs=64.1

Q ss_pred             hCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHH
Q 020754          103 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  182 (322)
Q Consensus       103 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~  182 (322)
                      .+++|+.|+|++|.++...-   ...+++|++|+|++ +.++......+ ..+++|+.|++..+.+       .......
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p---~~~l~~L~~L~Ls~-n~~~~~~p~~~-~~l~~L~~L~L~~n~l-------~~~~p~~  183 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIP---RGSIPNLETLDLSN-NMLSGEIPNDI-GSFSSLKVLDLGGNVL-------VGKIPNS  183 (968)
T ss_pred             cCCCCCEEECcCCccccccC---ccccCCCCEEECcC-CcccccCChHH-hcCCCCCEEECccCcc-------cccCChh
Confidence            45555555555554332110   01245566666665 23332222222 3456666665543322       1111122


Q ss_pred             HHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          183 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       183 l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      +. .+++|++|+|++|.++... ...+..+++|+.|+|++|.... ........+++|++|.+
T Consensus       184 ~~-~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L  243 (968)
T PLN00113        184 LT-NLTSLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLSG-EIPYEIGGLTSLNHLDL  243 (968)
T ss_pred             hh-hCcCCCeeeccCCCCcCcC-ChHHcCcCCccEEECcCCccCC-cCChhHhcCCCCCEEEC
Confidence            33 5777777777777654332 2233467788888887775332 11222356777777754

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.32  E-value=5.5e-08  Score=83.21  Aligned_cols=67  Identities=30%  Similarity=0.332  Sum_probs=53.3

Q ss_pred             hHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCCh--HHHHhcCCCCeeeC
Q 020754          178 DEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLG  244 (322)
Q Consensus       178 ~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~--~~l~~~~~~Lk~L~  244 (322)
                      .++..++..+|+|++|++++|+|.+-.-..-+...++|..|++.+|....+++  ..+...+|+|++|.
T Consensus        81 ~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen   81 GGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             ccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            34556677789999999999998864444556678899999999998776655  56778899999994

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.31  E-value=2.1e-06  Score=74.11  Aligned_cols=112  Identities=14%  Similarity=0.096  Sum_probs=56.9

Q ss_pred             CCCCCEEecCCCCCC---HHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHH----hcCCCcceeeccccccCCCCCCCC
Q 020754          104 AGSLQTLRLPRSEMS---DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIG----KHCKLLVVLCRNMHPLDTADKLSQ  176 (322)
Q Consensus       104 ~~~L~~L~L~~~~i~---~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~----~~c~~L~~L~l~~~~l~~~~~~~~  176 (322)
                      -|.|+++...+|++.   ........+.-.+|+.+.+.. +.|.++++..++    ..|.+|+.|.+..++++..|    
T Consensus       156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~g----  230 (388)
T COG5238         156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEG----  230 (388)
T ss_pred             CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccccchhhhh----
Confidence            455555555555322   122222222224667777766 666666554332    25666666655444443222    


Q ss_pred             chHHHHHH---hcCCCCCEEEecCcccCHHHHHHHHhc-----CCCCCEEeecCC
Q 020754          177 DDEANAIA---STMPKLKRLEMAYHVISTEIVLKILSS-----CALLEFLDLRGC  223 (322)
Q Consensus       177 ~~~~~~l~---~~~p~L~~L~L~~~~i~~~~l~~i~~~-----~~~L~~L~L~~c  223 (322)
                         ...++   +..|.|+.|++..|-++..++.++++.     .|+|..|-...+
T Consensus       231 ---S~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yn  282 (388)
T COG5238         231 ---SRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYN  282 (388)
T ss_pred             ---HHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchh
Confidence               22222   245566777777776666666655543     356666655443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.18  E-value=3.2e-07  Score=86.53  Aligned_cols=128  Identities=21%  Similarity=0.168  Sum_probs=85.3

Q ss_pred             hCCCCCEEecCCCCC---CHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchH
Q 020754          103 NAGSLQTLRLPRSEM---SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDE  179 (322)
Q Consensus       103 ~~~~L~~L~L~~~~i---~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~  179 (322)
                      .|++|+.|+|++|.|   ....+..+    ..|++|+|+. +.++.-.- ....+.++|+.|++..+.+..  |  ..++
T Consensus       315 ftqkL~~LdLs~N~i~~l~~~sf~~L----~~Le~LnLs~-Nsi~~l~e-~af~~lssL~~LdLr~N~ls~--~--IEDa  384 (873)
T KOG4194|consen  315 FTQKLKELDLSSNRITRLDEGSFRVL----SQLEELNLSH-NSIDHLAE-GAFVGLSSLHKLDLRSNELSW--C--IEDA  384 (873)
T ss_pred             hcccceeEeccccccccCChhHHHHH----HHhhhhcccc-cchHHHHh-hHHHHhhhhhhhcCcCCeEEE--E--Eecc
Confidence            488999999998854   44555444    7789999987 66654322 223456889999887665532  1  2334


Q ss_pred             HHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeC
Q 020754          180 ANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  244 (322)
Q Consensus       180 ~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~  244 (322)
                      +.++ +.+|.|+.|.|.||++....-.+ +.+++.||+|+|.++..-+.....+. .. +||.|-
T Consensus       385 a~~f-~gl~~LrkL~l~gNqlk~I~krA-fsgl~~LE~LdL~~NaiaSIq~nAFe-~m-~Lk~Lv  445 (873)
T KOG4194|consen  385 AVAF-NGLPSLRKLRLTGNQLKSIPKRA-FSGLEALEHLDLGDNAIASIQPNAFE-PM-ELKELV  445 (873)
T ss_pred             hhhh-ccchhhhheeecCceeeecchhh-hccCcccceecCCCCcceeecccccc-cc-hhhhhh
Confidence            4444 47999999999999865443333 45899999999999876554443332 22 666664

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.16  E-value=3.3e-06  Score=84.01  Aligned_cols=128  Identities=17%  Similarity=0.166  Sum_probs=88.7

Q ss_pred             CCCCCEEecCCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHH
Q 020754          104 AGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  182 (322)
Q Consensus       104 ~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~  182 (322)
                      -.+|++|++++. .+...-...+...+|.|++|.+++ ..+...-+..+.+++|+|..|+++.+.       +.+-  ..
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn-------I~nl--~G  190 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTN-------ISNL--SG  190 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCC-------ccCc--HH
Confidence            457888888887 555556667777888888888888 455555688888888888888655443       3222  33


Q ss_pred             HHhcCCCCCEEEecCcccCH-HHHHHHHhcCCCCCEEeecCCCCcCCChHHH------HhcCCCCeeeC
Q 020754          183 IASTMPKLKRLEMAYHVIST-EIVLKILSSCALLEFLDLRGCWDVKLDDKFM------KGNFPNLKVLG  244 (322)
Q Consensus       183 l~~~~p~L~~L~L~~~~i~~-~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l------~~~~~~Lk~L~  244 (322)
                      +. .+++|+.|.+.+-.+.. ..+..++ .+++|++||+|.-...... ..+      ...+|+|+.|+
T Consensus       191 IS-~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~-~ii~qYlec~~~LpeLrfLD  256 (699)
T KOG3665|consen  191 IS-RLKNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDT-KIIEQYLECGMVLPELRFLD  256 (699)
T ss_pred             Hh-ccccHHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccch-HHHHHHHHhcccCccccEEe
Confidence            43 78888888888877665 4455555 6899999999886655322 111      35578888884

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=98.14  E-value=3.3e-06  Score=88.19  Aligned_cols=81  Identities=17%  Similarity=0.106  Sum_probs=39.7

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV  160 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~  160 (322)
                      ..|+.|+++++.-...+......+++|+.|+|.+|.++...... ...+++|++|++++| .++......+ ..+++|+.
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~n-~l~~~~p~~l-~~l~~L~~  216 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS-LTNLTSLEFLTLASN-QLVGQIPREL-GQMKSLKW  216 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChh-hhhCcCCCeeeccCC-CCcCcCChHH-cCcCCccE
Confidence            45777888765322122222345677777777777544321112 234566667766663 3332222222 23455555


Q ss_pred             eecc
Q 020754          161 LCRN  164 (322)
Q Consensus       161 L~l~  164 (322)
                      |.++
T Consensus       217 L~L~  220 (968)
T PLN00113        217 IYLG  220 (968)
T ss_pred             EECc
Confidence            5543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.89  E-value=0.0003  Score=61.08  Aligned_cols=90  Identities=13%  Similarity=0.212  Sum_probs=47.6

Q ss_pred             eeeccccccccCChhHHHHHHHHHHHhcCCCeeEEEecCCCC----hH---HHH---HHHHhCCCCCEEecCCCCCC---
Q 020754           52 QEIDIEEWSNRCQPDHLDRMVEMLITRSSGSLRKLCVSGLHN----DM---MFS---LIAENAGSLQTLRLPRSEMS---  118 (322)
Q Consensus        52 ~~i~l~~~~~~~~~~~~~~~l~~l~~r~~~~l~~L~l~~~~~----~~---~l~---~l~~~~~~L~~L~L~~~~i~---  118 (322)
                      ..++++.+..  ..+....+...+..  ..+|+..+++...+    +.   .+.   ...-.||+|+.++|+.|-+.   
T Consensus        33 ~evdLSGNti--gtEA~e~l~~~ia~--~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          33 VEVDLSGNTI--GTEAMEELCNVIAN--VRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             eEEeccCCcc--cHHHHHHHHHHHhh--hcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            4566665433  34444444443322  34466666654221    11   122   22235888888888887332   


Q ss_pred             HHHHHHHHhcCCCccEEeccCCCCCCHH
Q 020754          119 DSIVAQIAGRLSAVTFLDLSYCSKIGAP  146 (322)
Q Consensus       119 ~~~l~~l~~~~~~L~~L~l~~c~~i~~~  146 (322)
                      ..-+..+.++..+|++|.+++ +++++.
T Consensus       109 ~e~L~d~is~~t~l~HL~l~N-nGlGp~  135 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNN-NGLGPI  135 (388)
T ss_pred             chHHHHHHhcCCCceeEEeec-CCCCcc
Confidence            334445555667788888887 455543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=1.7e-05  Score=65.65  Aligned_cols=59  Identities=27%  Similarity=0.312  Sum_probs=30.2

Q ss_pred             CCCCCEEecCCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeec
Q 020754          104 AGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCR  163 (322)
Q Consensus       104 ~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l  163 (322)
                      ++.|+.|.+.+| .+.|.++..+..-.|+|+.|+|++|..||+.++.-+.+ +++|+.|.+
T Consensus       124 l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknLr~L~l  183 (221)
T KOG3864|consen  124 LRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNLRRLHL  183 (221)
T ss_pred             cchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhhHHHHh
Confidence            444555555555 55555555555545555555555555555555544443 244444443

>PLN03210 Resistant to P

Probab=97.74  E-value=6.1e-05  Score=80.01  Aligned_cols=13  Identities=31%  Similarity=0.478  Sum_probs=6.7

Q ss_pred             cCCCCCEEEecCc
Q 020754          186 TMPKLKRLEMAYH  198 (322)
Q Consensus       186 ~~p~L~~L~L~~~  198 (322)
                      .+++|++|+|++|
T Consensus       800 ~L~~L~~L~Ls~C  812 (1153)
T PLN03210        800 NLHKLEHLEIENC  812 (1153)
T ss_pred             CCCCCCEEECCCC
Confidence            3455555555554

syringae 6; Provisional

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.73  E-value=7.4e-06  Score=71.00  Aligned_cols=102  Identities=23%  Similarity=0.215  Sum_probs=65.4

Q ss_pred             CCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH
Q 020754          104 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  183 (322)
Q Consensus       104 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l  183 (322)
                      ..+.+.|++.+|+++|.   .++.++|.|+.|.|+- |.|+.            |.                      .+
T Consensus        18 l~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSv-NkIss------------L~----------------------pl   59 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSV-NKISS------------LA----------------------PL   59 (388)
T ss_pred             HHHhhhhcccCCCccHH---HHHHhcccceeEEeec-ccccc------------ch----------------------hH
Confidence            45778899999999887   4556789999999986 66642            11                      11


Q ss_pred             HhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCCh----HHHHhcCCCCeeeC
Q 020754          184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD----KFMKGNFPNLKVLG  244 (322)
Q Consensus       184 ~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~----~~l~~~~~~Lk~L~  244 (322)
                       ..|.+|++|.|..|.|.+-.-.+.+.++|+|+.|.|..++-....+    ..+++.+|+||.|+
T Consensus        60 -~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   60 -QRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             -HHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence             2566666666666666665555556666777776666554443223    23456667777764

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.70  E-value=8.9e-06  Score=77.09  Aligned_cols=34  Identities=26%  Similarity=0.236  Sum_probs=14.1

Q ss_pred             CCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCC
Q 020754          189 KLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC  223 (322)
Q Consensus       189 ~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c  223 (322)
                      +|..|.|+.|.|+.-.. .+++.+|+|++|+|..+
T Consensus       198 sL~tlkLsrNrittLp~-r~Fk~L~~L~~LdLnrN  231 (873)
T KOG4194|consen  198 SLLTLKLSRNRITTLPQ-RSFKRLPKLESLDLNRN  231 (873)
T ss_pred             hheeeecccCcccccCH-HHhhhcchhhhhhcccc
Confidence            44444444444433221 22333445555555443

>PLN03210 Resistant to P

Probab=97.64  E-value=5.1e-05  Score=80.56  Aligned_cols=39  Identities=23%  Similarity=0.418  Sum_probs=27.3

Q ss_pred             CCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcC
Q 020754          187 MPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVK  227 (322)
Q Consensus       187 ~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~  227 (322)
                      .++|+.|+|+++.++.  +..-+..+++|+.|+|++|.++.
T Consensus       845 ~~nL~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L~  883 (1153)
T PLN03210        845 STNISDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNLQ  883 (1153)
T ss_pred             ccccCEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCcC
Confidence            3578888888877653  22234578888888888887764

syringae 6; Provisional

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.64  E-value=4.3e-05  Score=66.99  Aligned_cols=88  Identities=16%  Similarity=0.113  Sum_probs=60.4

Q ss_pred             HhcCCCeeEEEecCC--CChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhc
Q 020754           77 TRSSGSLRKLCVSGL--HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKH  154 (322)
Q Consensus        77 ~r~~~~l~~L~l~~~--~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~  154 (322)
                      ...+..++.+++.+-  ...+-+..|.+++|.|+.|+|+.|.++.. +..+.....+|++|-|++ +.++......+.+.
T Consensus        67 ~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~l~~  144 (418)
T KOG2982|consen   67 GSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNG-TGLSWTQSTSSLDD  144 (418)
T ss_pred             HHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcC-CCCChhhhhhhhhc
Confidence            334455777777653  24566777778888888888888855433 222322346888888888 78888888888888


Q ss_pred             CCCcceeecccc
Q 020754          155 CKLLVVLCRNMH  166 (322)
Q Consensus       155 c~~L~~L~l~~~  166 (322)
                      .|.++.|+++.+
T Consensus       145 lP~vtelHmS~N  156 (418)
T KOG2982|consen  145 LPKVTELHMSDN  156 (418)
T ss_pred             chhhhhhhhccc
Confidence            888888877654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.61  E-value=8.6e-05  Score=61.58  Aligned_cols=105  Identities=19%  Similarity=0.269  Sum_probs=60.2

Q ss_pred             CCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhc
Q 020754          107 LQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAST  186 (322)
Q Consensus       107 L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~  186 (322)
                      ++.++-+++.|..+|+..+ ..++.|+.|.+..|..+.+-++..++.                                -
T Consensus       103 IeaVDAsds~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~--------------------------------~  149 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGG--------------------------------L  149 (221)
T ss_pred             EEEEecCCchHHHHHHHHH-hccchhhhheeccccchhhHHHHHhcc--------------------------------c
Confidence            4555556666777777766 345777777777776666666555544                                4


Q ss_pred             CCCCCEEEecCcc-cCHHHHHHHHhcCCCCCEEeecCCCCcCCCh---HHHHhcCCCCeeeCC
Q 020754          187 MPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDD---KFMKGNFPNLKVLGP  245 (322)
Q Consensus       187 ~p~L~~L~L~~~~-i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~---~~l~~~~~~Lk~L~~  245 (322)
                      .|+|+.|+|++|. ||+.++.-+. .+++|+.|.|++-..+..-+   ..+...+|++++...
T Consensus       150 ~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~~~  211 (221)
T KOG3864|consen  150 APSLQDLDLSGCPRITDGGLACLL-KLKNLRRLHLYDLPYVANLELVQRQLEEALPKCDIVGP  211 (221)
T ss_pred             ccchheeeccCCCeechhHHHHHH-HhhhhHHHHhcCchhhhchHHHHHHHHHhCcccceech
Confidence            4566666666553 5555554433 45666666665544443211   234556666666544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.51  E-value=4.7e-05  Score=75.74  Aligned_cols=44  Identities=30%  Similarity=0.467  Sum_probs=33.9

Q ss_pred             HHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcC
Q 020754          182 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVK  227 (322)
Q Consensus       182 ~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~  227 (322)
                      .++ .+|.|+.++++.|.++.-.+.+.+.. |+|++||++|+....
T Consensus       447 e~~-~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~  490 (1081)
T KOG0618|consen  447 ELA-QLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLV  490 (1081)
T ss_pred             hhh-hcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccc
Confidence            444 68899999999999877665544432 899999999987553

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=97.25  E-value=0.0001  Score=64.83  Aligned_cols=54  Identities=22%  Similarity=0.421  Sum_probs=45.1

Q ss_pred             CCCcccCCHHHHHHHHcc-----CChHHHhhhhhhhhHHHHHHhcCCCceeeeccccccc
Q 020754            7 FRHWDELIPDALGLIFRN-----LSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSN   61 (322)
Q Consensus         7 ~~~w~~LP~eiL~~IF~~-----L~~~~~l~~~~~VCk~W~~~~~~~~lw~~i~l~~~~~   61 (322)
                      ...+..||+|||..||+.     +++.++.. ++.|||.|+..+++|.+|+..-+..|..
T Consensus       104 ~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~-~s~vCr~F~~~~R~~~lwR~aC~KvW~~  162 (366)
T KOG2997|consen  104 LISISVLPDEVLMRIFRWVVSSLLDLRSLEQ-LSLVCRGFYKCARDPELWRLACLKVWQR  162 (366)
T ss_pred             hhhhhhCCHHHHHHHHHHHHhhhcchhhHHH-hHhhHHHHHHHHcChHHHHHHHHHHHHH
Confidence            345678999999999984     55677777 7999999999999999999887776643

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=97.24  E-value=0.0004  Score=38.05  Aligned_cols=25  Identities=36%  Similarity=0.510  Sum_probs=19.7

Q ss_pred             CCCccEEeccCCCCCCHHHHHHHHh
Q 020754          129 LSAVTFLDLSYCSKIGAPALEAIGK  153 (322)
Q Consensus       129 ~~~L~~L~l~~c~~i~~~~l~~l~~  153 (322)
                      ||+|++|+|++|..+++.++.++++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~~   25 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALAK   25 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence            5778888888888888888877764

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=97.21  E-value=2.8e-05  Score=74.49  Aligned_cols=39  Identities=21%  Similarity=0.158  Sum_probs=24.5

Q ss_pred             cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCc
Q 020754          186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  226 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~  226 (322)
                      ++++|+.|+|++|.|+.-.+.  ...-.+|++|+|+++..+
T Consensus       243 ~l~~LrrLNLS~N~iteL~~~--~~~W~~lEtLNlSrNQLt  281 (1255)
T KOG0444|consen  243 KLRNLRRLNLSGNKITELNMT--EGEWENLETLNLSRNQLT  281 (1255)
T ss_pred             hhhhhheeccCcCceeeeecc--HHHHhhhhhhccccchhc
Confidence            577899999999887643211  112246777777766544

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=97.07  E-value=0.00048  Score=63.16  Aligned_cols=39  Identities=31%  Similarity=0.607  Sum_probs=34.7

Q ss_pred             CCCcccCCHHHHHHHHccC-ChHHHhhhhhhhhHHHHHHhc
Q 020754            7 FRHWDELIPDALGLIFRNL-SLQEVLTVIPGVCKSWRRAVI   46 (322)
Q Consensus         7 ~~~w~~LP~eiL~~IF~~L-~~~~~l~~~~~VCk~W~~~~~   46 (322)
                      +..|++||+|+|..|.++| ...|+++ .+.||+.||..+.
T Consensus         1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~-~~~vC~sWr~a~~   40 (373)
T PLN03215          1 MADWSTLPEELLHMIAGRLFSNVELKR-FRSICRSWRSSVS   40 (373)
T ss_pred             CCChhhCCHHHHHHHHhhCCcHHHHHH-HHhhhhhHHHhcc
Confidence            3679999999999999999 5668888 6999999999876

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.01  E-value=0.00017  Score=63.42  Aligned_cols=124  Identities=22%  Similarity=0.131  Sum_probs=76.1

Q ss_pred             hCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHH
Q 020754          103 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  182 (322)
Q Consensus       103 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~  182 (322)
                      .+..|++|+|++|.|+.  +..-.+-.|.++.|++++ +.+..-+-   .+.+++|+.|+++.+.+         .....
T Consensus       282 TWq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~-N~i~~v~n---La~L~~L~~LDLS~N~L---------s~~~G  346 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQ-NRIRTVQN---LAELPQLQLLDLSGNLL---------AECVG  346 (490)
T ss_pred             hHhhhhhccccccchhh--hhhhhhhccceeEEeccc-cceeeehh---hhhcccceEeecccchh---------Hhhhh
Confidence            35678899999986652  122223349999999998 66654322   23468899998776654         11222


Q ss_pred             HHhcCCCCCEEEecCcccCHH-HHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          183 IASTMPKLKRLEMAYHVISTE-IVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       183 l~~~~p~L~~L~L~~~~i~~~-~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      ....+-|++.|.|++|.|.+- ++    .++-.|..||++++..-.++.....-.+|-|.+|.+
T Consensus       347 wh~KLGNIKtL~La~N~iE~LSGL----~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L  406 (490)
T KOG1259|consen  347 WHLKLGNIKTLKLAQNKIETLSGL----RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRL  406 (490)
T ss_pred             hHhhhcCEeeeehhhhhHhhhhhh----HhhhhheeccccccchhhHHHhcccccccHHHHHhh
Confidence            334567888999988875432 22    244578888998875433333333345566666643

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=96.95  E-value=0.00016  Score=69.44  Aligned_cols=93  Identities=19%  Similarity=0.136  Sum_probs=53.9

Q ss_pred             CCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHH-----HH-----------HhcCCCCCEE
Q 020754          130 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN-----AI-----------ASTMPKLKRL  193 (322)
Q Consensus       130 ~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~-----~l-----------~~~~p~L~~L  193 (322)
                      .+|++|++|. +.++  ++.+..-.+++|+.|.++.+.+++.|.+....-+.     ..           ...|++|+.|
T Consensus       268 ~~lEtLNlSr-NQLt--~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL  344 (1255)
T KOG0444|consen  268 ENLETLNLSR-NQLT--VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKL  344 (1255)
T ss_pred             hhhhhhcccc-chhc--cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHh
Confidence            4455555554 3332  12222223577888888888888877643222111     11           1257888888


Q ss_pred             EecCcc-cCHHHHHHHHhcCCCCCEEeecCCCCcCC
Q 020754          194 EMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKL  228 (322)
Q Consensus       194 ~L~~~~-i~~~~l~~i~~~~~~L~~L~L~~c~~~~~  228 (322)
                      .|+.|. ||-.   .-+.-+|.|+.||+..++++-+
T Consensus       345 ~L~~NrLiTLP---eaIHlL~~l~vLDlreNpnLVM  377 (1255)
T KOG0444|consen  345 KLDHNRLITLP---EAIHLLPDLKVLDLRENPNLVM  377 (1255)
T ss_pred             cccccceeech---hhhhhcCCcceeeccCCcCccC
Confidence            888886 3322   2223467888888888877654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.92  E-value=0.00038  Score=61.17  Aligned_cols=149  Identities=22%  Similarity=0.294  Sum_probs=95.6

Q ss_pred             eeEEEecCCC--ChHHHHHHHHhCCCCCEEecCCCCCCH-HHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020754           83 LRKLCVSGLH--NDMMFSLIAENAGSLQTLRLPRSEMSD-SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV  159 (322)
Q Consensus        83 l~~L~l~~~~--~~~~l~~l~~~~~~L~~L~L~~~~i~~-~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~  159 (322)
                      ++-+.+.++.  +......++..+..++.++|.+|.|++ .-+.++..++|.|++|+|+ |+.++.. +..+.....+|+
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls-~N~L~s~-I~~lp~p~~nl~  124 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLS-CNSLSSD-IKSLPLPLKNLR  124 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeecc-CCcCCCc-cccCcccccceE
Confidence            3344555543  455677788889999999999998876 4577888999999999999 4776532 222223346788


Q ss_pred             eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcc---c--CHHHHHHHHhcCCCCCEEeecCCCCcCCCh-HHH
Q 020754          160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV---I--STEIVLKILSSCALLEFLDLRGCWDVKLDD-KFM  233 (322)
Q Consensus       160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~---i--~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~-~~l  233 (322)
                      .|-++...+.+       .........+|+++.|+++.|.   +  .+....   ..-+.+.+|.+.+|....... ..+
T Consensus       125 ~lVLNgT~L~w-------~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e---~~s~~v~tlh~~~c~~~~w~~~~~l  194 (418)
T KOG2982|consen  125 VLVLNGTGLSW-------TQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIE---DWSTEVLTLHQLPCLEQLWLNKNKL  194 (418)
T ss_pred             EEEEcCCCCCh-------hhhhhhhhcchhhhhhhhccchhhhhcccccccc---ccchhhhhhhcCCcHHHHHHHHHhH
Confidence            88887766543       3344555678888888888773   1  111111   123567777777775332111 234


Q ss_pred             HhcCCCCeee
Q 020754          234 KGNFPNLKVL  243 (322)
Q Consensus       234 ~~~~~~Lk~L  243 (322)
                      .+.+|++..+
T Consensus       195 ~r~Fpnv~sv  204 (418)
T KOG2982|consen  195 SRIFPNVNSV  204 (418)
T ss_pred             Hhhcccchhe
Confidence            5677777765

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=96.81  E-value=0.00019  Score=71.52  Aligned_cols=124  Identities=20%  Similarity=0.250  Sum_probs=82.8

Q ss_pred             CCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH
Q 020754          104 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  183 (322)
Q Consensus       104 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l  183 (322)
                      .+.|+.|.+.+|.++|..+..+ .+++.|+.|+|++ +.++.-.... ...++.|+.|.++.+.+.        .-...+
T Consensus       358 ~~~Lq~LylanN~Ltd~c~p~l-~~~~hLKVLhLsy-NrL~~fpas~-~~kle~LeeL~LSGNkL~--------~Lp~tv  426 (1081)
T KOG0618|consen  358 HAALQELYLANNHLTDSCFPVL-VNFKHLKVLHLSY-NRLNSFPASK-LRKLEELEELNLSGNKLT--------TLPDTV  426 (1081)
T ss_pred             hHHHHHHHHhcCcccccchhhh-ccccceeeeeecc-cccccCCHHH-HhchHHhHHHhcccchhh--------hhhHHH
Confidence            4567888888999999888766 4669999999998 5544221122 234577888877655541        112344


Q ss_pred             HhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcC--CCCeeeCC
Q 020754          184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNF--PNLKVLGP  245 (322)
Q Consensus       184 ~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~--~~Lk~L~~  245 (322)
                      + .|+.|++|...+|.+..-  .+++ ..++|+++||+.+. +  +...+....  |+||+|++
T Consensus       427 a-~~~~L~tL~ahsN~l~~f--Pe~~-~l~qL~~lDlS~N~-L--~~~~l~~~~p~p~LkyLdl  483 (1081)
T KOG0618|consen  427 A-NLGRLHTLRAHSNQLLSF--PELA-QLPQLKVLDLSCNN-L--SEVTLPEALPSPNLKYLDL  483 (1081)
T ss_pred             H-hhhhhHHHhhcCCceeec--hhhh-hcCcceEEecccch-h--hhhhhhhhCCCcccceeec
Confidence            4 788999999998875432  2334 68999999999764 5  222332233  68999975

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.67  E-value=0.001  Score=58.61  Aligned_cols=128  Identities=17%  Similarity=0.138  Sum_probs=80.3

Q ss_pred             eeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceee
Q 020754           83 LRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLC  162 (322)
Q Consensus        83 l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~  162 (322)
                      ++.+++++-.. .-+..-.+-.|.++.|.+++|+++..+  .+ +.+++|+.|+|++ +.++.  +..+-..+-+++.|.
T Consensus       286 LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~v~--nL-a~L~~L~~LDLS~-N~Ls~--~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  286 LTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRTVQ--NL-AELPQLQLLDLSG-NLLAE--CVGWHLKLGNIKTLK  358 (490)
T ss_pred             hhhccccccch-hhhhhhhhhccceeEEeccccceeeeh--hh-hhcccceEeeccc-chhHh--hhhhHhhhcCEeeee
Confidence            55566665321 111111233689999999999765432  22 3469999999998 55543  333334456788887


Q ss_pred             ccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcC
Q 020754          163 RNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVK  227 (322)
Q Consensus       163 l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~  227 (322)
                      +..+.+         +.+..+. .+-+|..|++++|+|..-.-..-+.++|-|++|.|.+++...
T Consensus       359 La~N~i---------E~LSGL~-KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  359 LAQNKI---------ETLSGLR-KLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhhhhH---------hhhhhhH-hhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            654433         2223333 455788899999987664444445578999999998887443

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=96.59  E-value=0.0014  Score=58.45  Aligned_cols=46  Identities=20%  Similarity=0.341  Sum_probs=41.3

Q ss_pred             ccCC----HHHHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCceeeeccc
Q 020754           11 DELI----PDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIE   57 (322)
Q Consensus        11 ~~LP----~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw~~i~l~   57 (322)
                      ..||    ++|...||+||+..++.. |-.|||+|+.+..+|.+|+++.-.
T Consensus        76 ~~lP~~gl~hi~e~ilsyld~~sLc~-celv~k~W~r~l~dg~~WKkLie~  125 (499)
T KOG0281|consen   76 TALPEQGLDHIAENILSYLDALSLCA-CELVCKEWKRVLSDGMLWKKLIER  125 (499)
T ss_pred             HhcccccHHHHHHHHHHhcchhhhhH-HHHHHHHHHHHhccchHHHHHHHH
Confidence            4589    999999999999999998 899999999999999999877433

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.53  E-value=0.00024  Score=47.73  Aligned_cols=38  Identities=21%  Similarity=0.358  Sum_probs=22.4

Q ss_pred             cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020754          186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  224 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~  224 (322)
                      .+++|++|+|++|.++.-. ...+.++++|++|++++|.
T Consensus        23 ~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen   23 NLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSSS
T ss_pred             CCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCCc
Confidence            5667777777766654221 1234566777777776663

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.52  E-value=0.00024  Score=69.33  Aligned_cols=107  Identities=25%  Similarity=0.294  Sum_probs=63.2

Q ss_pred             CCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH
Q 020754          104 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  183 (322)
Q Consensus       104 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l  183 (322)
                      .+.|++|+|++|++++..   ....|+.|++|+|++ |.++.-.-..+ .+|+ |..|.+.++.+         ..+..|
T Consensus       186 l~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsy-N~L~~vp~l~~-~gc~-L~~L~lrnN~l---------~tL~gi  250 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSY-NCLRHVPQLSM-VGCK-LQLLNLRNNAL---------TTLRGI  250 (1096)
T ss_pred             HHHhhhhccchhhhhhhH---HHHhccccccccccc-chhccccccch-hhhh-heeeeecccHH---------HhhhhH
Confidence            456667777776655432   334566777777766 44432111111 1222 55554443322         223444


Q ss_pred             HhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCc
Q 020754          184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  226 (322)
Q Consensus       184 ~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~  226 (322)
                      . ++.+|+.|++++|-+.+-.-...+-.+..|..|.|.||+.-
T Consensus       251 e-~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  251 E-NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             H-hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            4 78899999999998776655555666778888999888643

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.52  E-value=0.0026  Score=39.69  Aligned_cols=35  Identities=26%  Similarity=0.271  Sum_probs=26.4

Q ss_pred             CCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020754          188 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  224 (322)
Q Consensus       188 p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~  224 (322)
                      |+|++|+|++|.|++  +...+.++++|+.|++++|.
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence            578999999998875  33336689999999999985

...

>PLN03150 hypothetical protein; Provisional

Probab=96.50  E-value=0.0048  Score=61.42  Aligned_cols=16  Identities=19%  Similarity=0.333  Sum_probs=8.1

Q ss_pred             cCCCCCEEEecCcccC
Q 020754          186 TMPKLKRLEMAYHVIS  201 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i~  201 (322)
                      .+++|+.|+|++|.++
T Consensus       488 ~L~~L~~L~Ls~N~l~  503 (623)
T PLN03150        488 QLTSLRILNLNGNSLS  503 (623)
T ss_pred             cCCCCCEEECcCCccc
Confidence            4455555555555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.46  E-value=0.00027  Score=60.82  Aligned_cols=115  Identities=16%  Similarity=0.182  Sum_probs=72.4

Q ss_pred             HHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchH
Q 020754          100 IAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDE  179 (322)
Q Consensus       100 l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~  179 (322)
                      +.....+|+.|++.++.++.  +..+ ..+|+|+.|.++..+.-...++..++..||+|++|.++.+.++.      -+.
T Consensus        38 l~d~~~~le~ls~~n~gltt--~~~~-P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~------lst  108 (260)
T KOG2739|consen   38 LTDEFVELELLSVINVGLTT--LTNF-PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD------LST  108 (260)
T ss_pred             ccccccchhhhhhhccceee--cccC-CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc------ccc
Confidence            34445566666666664332  1111 23589999999973333456678888888999999887665532      122


Q ss_pred             HHHHHhcCCCCCEEEecCcccCH--HHHHHHHhcCCCCCEEeecCCC
Q 020754          180 ANAIASTMPKLKRLEMAYHVIST--EIVLKILSSCALLEFLDLRGCW  224 (322)
Q Consensus       180 ~~~l~~~~p~L~~L~L~~~~i~~--~~l~~i~~~~~~L~~L~L~~c~  224 (322)
                      +..+ +.+++|..|++..|.++.  ..=..++.-+|+|+.|+-..+.
T Consensus       109 l~pl-~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  109 LRPL-KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             cchh-hhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence            2333 367899999999986443  1223455567899988875543

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=96.38  E-value=0.005  Score=33.58  Aligned_cols=24  Identities=21%  Similarity=0.324  Sum_probs=21.9

Q ss_pred             CCCCCEEecCCC-CCCHHHHHHHHh
Q 020754          104 AGSLQTLRLPRS-EMSDSIVAQIAG  127 (322)
Q Consensus       104 ~~~L~~L~L~~~-~i~~~~l~~l~~  127 (322)
                      |++|+.|+|.+| .|||.++..+++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~~   25 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALAK   25 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence            689999999999 899999998874

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.03  E-value=0.00071  Score=45.41  Aligned_cols=16  Identities=25%  Similarity=0.621  Sum_probs=12.6

Q ss_pred             hcCCCCCEEEecCccc
Q 020754          185 STMPKLKRLEMAYHVI  200 (322)
Q Consensus       185 ~~~p~L~~L~L~~~~i  200 (322)
                      ..+|+|++|++++|.|
T Consensus        46 ~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen   46 SNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTSTTESEEEETSSSB
T ss_pred             cCCCCCCEEeCcCCcC
Confidence            4788888888888764

...

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=96.02  E-value=0.0063  Score=32.41  Aligned_cols=23  Identities=22%  Similarity=0.348  Sum_probs=17.4

Q ss_pred             CCCCCEEEecCcccCHHHHHHHH
Q 020754          187 MPKLKRLEMAYHVISTEIVLKIL  209 (322)
Q Consensus       187 ~p~L~~L~L~~~~i~~~~l~~i~  209 (322)
                      |++|++|+|++|.|+++++.+++
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l~   23 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASALA   23 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHhC
Confidence            57899999999999999888775

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.96  E-value=0.005  Score=51.34  Aligned_cols=106  Identities=15%  Similarity=0.178  Sum_probs=44.4

Q ss_pred             CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHH
Q 020754          105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  184 (322)
Q Consensus       105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~  184 (322)
                      .+...++|+.+.+-.   .....++++|..|.++. +.|+.- -..+....|+|+.|.+..+.+      ..-..+..++
T Consensus        42 d~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~n-NrIt~I-~p~L~~~~p~l~~L~LtnNsi------~~l~dl~pLa  110 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNN-NRITRI-DPDLDTFLPNLKTLILTNNSI------QELGDLDPLA  110 (233)
T ss_pred             cccceecccccchhh---cccCCCccccceEEecC-Ccceee-ccchhhhccccceEEecCcch------hhhhhcchhc
Confidence            345555555542211   11223446666666665 555421 112223335555554433222      0001122233


Q ss_pred             hcCCCCCEEEecCcccCHHHHH--HHHhcCCCCCEEeecC
Q 020754          185 STMPKLKRLEMAYHVISTEIVL--KILSSCALLEFLDLRG  222 (322)
Q Consensus       185 ~~~p~L~~L~L~~~~i~~~~l~--~i~~~~~~L~~L~L~~  222 (322)
                       .||+|+.|.+-+|.++...-.  .++..+|+|+.||..+
T Consensus       111 -~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  111 -SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             -cCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence             455555555555554433211  1222445555555543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=95.90  E-value=0.0067  Score=37.79  Aligned_cols=37  Identities=24%  Similarity=0.390  Sum_probs=25.1

Q ss_pred             CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCC
Q 020754          105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIG  144 (322)
Q Consensus       105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~  144 (322)
                      ++|+.|.+++|.|++  +......+++|+.|++++ +.++
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~-N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSN-NPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETS-SCCS
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecC-CCCC
Confidence            478888888887775  344346788888888888 4554

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.83  E-value=0.0032  Score=52.49  Aligned_cols=104  Identities=22%  Similarity=0.235  Sum_probs=56.9

Q ss_pred             CCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHH
Q 020754          130 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKIL  209 (322)
Q Consensus       130 ~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~  209 (322)
                      .+...++|++ +.+...   ......++|..|.++.+.+.        .-...+...+|+|+.|.|.+|.|-.-+=..-+
T Consensus        42 d~~d~iDLtd-Ndl~~l---~~lp~l~rL~tLll~nNrIt--------~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pL  109 (233)
T KOG1644|consen   42 DQFDAIDLTD-NDLRKL---DNLPHLPRLHTLLLNNNRIT--------RIDPDLDTFLPNLKTLILTNNSIQELGDLDPL  109 (233)
T ss_pred             cccceecccc-cchhhc---ccCCCccccceEEecCCcce--------eeccchhhhccccceEEecCcchhhhhhcchh
Confidence            5566677766 333211   11123456666666555442        11123344567777777777765554433444


Q ss_pred             hcCCCCCEEeecCCCCcCCCh--HHHHhcCCCCeeeCC
Q 020754          210 SSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLGP  245 (322)
Q Consensus       210 ~~~~~L~~L~L~~c~~~~~~~--~~l~~~~~~Lk~L~~  245 (322)
                      ..||+|++|.+-+++......  ..+....|+|++|++
T Consensus       110 a~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF  147 (233)
T KOG1644|consen  110 ASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDF  147 (233)
T ss_pred             ccCCccceeeecCCchhcccCceeEEEEecCcceEeeh
Confidence            567777777777765443222  224566777777754

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=95.37  E-value=0.00031  Score=57.03  Aligned_cols=109  Identities=19%  Similarity=0.289  Sum_probs=58.1

Q ss_pred             CCCCCEEecCCCCCCH--HHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHH
Q 020754          104 AGSLQTLRLPRSEMSD--SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN  181 (322)
Q Consensus       104 ~~~L~~L~L~~~~i~~--~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~  181 (322)
                      ..+++.|.|+++.++-  .++..    +.+|+.|++++ +.+..- ... ...+|+|+.|++.++.+...     ..+  
T Consensus        32 ~s~ITrLtLSHNKl~~vppnia~----l~nlevln~~n-nqie~l-p~~-issl~klr~lnvgmnrl~~l-----prg--   97 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPNIAE----LKNLEVLNLSN-NQIEEL-PTS-ISSLPKLRILNVGMNRLNIL-----PRG--   97 (264)
T ss_pred             hhhhhhhhcccCceeecCCcHHH----hhhhhhhhccc-chhhhc-Chh-hhhchhhhheecchhhhhcC-----ccc--
Confidence            3456666777764432  22222    36777777776 555321 112 23457777777766554321     111  


Q ss_pred             HHHhcCCCCCEEEecCcccCHH----------HHHHH-------------HhcCCCCCEEeecCCCCcCC
Q 020754          182 AIASTMPKLKRLEMAYHVISTE----------IVLKI-------------LSSCALLEFLDLRGCWDVKL  228 (322)
Q Consensus       182 ~l~~~~p~L~~L~L~~~~i~~~----------~l~~i-------------~~~~~~L~~L~L~~c~~~~~  228 (322)
                       + .++|.|+.|+|++|+++..          .+.++             +.++.+|+.|.++.+..++.
T Consensus        98 -f-gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~l  165 (264)
T KOG0617|consen   98 -F-GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSL  165 (264)
T ss_pred             -c-CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhC
Confidence             1 2566677777766543222          22222             23467888888888776653

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=95.30  E-value=0.043  Score=55.65  Aligned_cols=16  Identities=19%  Similarity=0.401  Sum_probs=12.4

Q ss_pred             CCCCCEEEecCcccCH
Q 020754          187 MPKLKRLEMAYHVIST  202 (322)
Q Consensus       187 ~p~L~~L~L~~~~i~~  202 (322)
                      .|+|+.|+|++|.++.
T Consensus       301 p~~L~~LdLS~N~L~~  316 (788)
T PRK15387        301 PPGLQELSVSDNQLAS  316 (788)
T ss_pred             ccccceeECCCCcccc
Confidence            4789999998887653

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=95.29  E-value=0.0062  Score=59.82  Aligned_cols=14  Identities=29%  Similarity=0.394  Sum_probs=8.8

Q ss_pred             CCCCCEEecCCCCC
Q 020754          104 AGSLQTLRLPRSEM  117 (322)
Q Consensus       104 ~~~L~~L~L~~~~i  117 (322)
                      +.+|+.|.|.+|.+
T Consensus       108 F~sLr~LElrg~~L  121 (1096)
T KOG1859|consen  108 FRSLRVLELRGCDL  121 (1096)
T ss_pred             ccceeeEEecCcch
Confidence            55666677766643

>PLN03150 hypothetical protein; Provisional

Probab=95.28  E-value=0.036  Score=55.24  Aligned_cols=107  Identities=16%  Similarity=0.236  Sum_probs=67.5

Q ss_pred             eeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceee
Q 020754           83 LRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLC  162 (322)
Q Consensus        83 l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~  162 (322)
                      ++.|+|++..-...+..-...+++|+.|+|++|.++.. +......+++|+.|+|++ +.++......++ .+++|+.|.
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~-N~lsg~iP~~l~-~L~~L~~L~  496 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSY-NSFNGSIPESLG-QLTSLRILN  496 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCC-CCCCCCCchHHh-cCCCCCEEE
Confidence            67788866432212222234689999999999977643 223345679999999998 566654444443 679999998


Q ss_pred             ccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcc
Q 020754          163 RNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV  199 (322)
Q Consensus       163 l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~  199 (322)
                      ++.+.+.  |     .....+.....++..+++.+|.
T Consensus       497 Ls~N~l~--g-----~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        497 LNGNSLS--G-----RVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcCCccc--c-----cCChHHhhccccCceEEecCCc
Confidence            8766442  2     1112233234567788888774

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=94.89  E-value=0.02  Score=30.45  Aligned_cols=22  Identities=27%  Similarity=0.306  Sum_probs=11.2

Q ss_pred             CCccEEeccCCCCCCHHHHHHHH
Q 020754          130 SAVTFLDLSYCSKIGAPALEAIG  152 (322)
Q Consensus       130 ~~L~~L~l~~c~~i~~~~l~~l~  152 (322)
                      ++|++|+|++| .+++.++.+|+
T Consensus         2 ~~L~~L~l~~n-~i~~~g~~~l~   23 (24)
T PF13516_consen    2 PNLETLDLSNN-QITDEGASALA   23 (24)
T ss_dssp             TT-SEEE-TSS-BEHHHHHHHHH
T ss_pred             CCCCEEEccCC-cCCHHHHHHhC
Confidence            55666666653 45666555554

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.84  E-value=0.017  Score=50.68  Aligned_cols=116  Identities=22%  Similarity=0.199  Sum_probs=76.4

Q ss_pred             CeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCccee
Q 020754           82 SLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL  161 (322)
Q Consensus        82 ~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L  161 (322)
                      .++.|+..||.-+.+  .|...+|.|+.|.|+-|.|+.  +.. ..+|++|+.|.|.. |.|.+-.-.+-.+++|+|+.|
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss--L~p-l~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS--LAP-LQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeecccccc--chh-HHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhH
Confidence            467888888753222  235679999999999987753  333 35789999999998 777765555556788999999


Q ss_pred             eccccccCCCCCCCCchHH-HHHHhcCCCCCEEEecCcccCHHHHHHHH
Q 020754          162 CRNMHPLDTADKLSQDDEA-NAIASTMPKLKRLEMAYHVISTEIVLKIL  209 (322)
Q Consensus       162 ~l~~~~l~~~~~~~~~~~~-~~l~~~~p~L~~L~L~~~~i~~~~l~~i~  209 (322)
                      .+..++....+    .... ..+...+|||+.|+  +-.++.+.+..-+
T Consensus        94 WL~ENPCc~~a----g~nYR~~VLR~LPnLkKLD--nv~VteeEle~AL  136 (388)
T KOG2123|consen   94 WLDENPCCGEA----GQNYRRKVLRVLPNLKKLD--NVPVTEEELEEAL  136 (388)
T ss_pred             hhccCCccccc----chhHHHHHHHHcccchhcc--CccccHHHHHHHH
Confidence            88655542111    1111 23345799999884  3345665555444

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=94.43  E-value=0.015  Score=58.96  Aligned_cols=34  Identities=15%  Similarity=0.078  Sum_probs=18.4

Q ss_pred             CCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020754          189 KLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  224 (322)
Q Consensus       189 ~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~  224 (322)
                      +|+.|++++|.++.  +..-+..+++|+.|+|++|.
T Consensus       423 ~L~~L~Ls~NqLt~--LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        423 GLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             hhhhhhhccCcccc--cChHHhhccCCCeEECCCCC
Confidence            45555555555442  22223356677777777764

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=94.37  E-value=0.057  Score=29.92  Aligned_cols=25  Identities=16%  Similarity=0.331  Sum_probs=21.5

Q ss_pred             CCCCEEEecCcccCHHHHHHHHhcC
Q 020754          188 PKLKRLEMAYHVISTEIVLKILSSC  212 (322)
Q Consensus       188 p~L~~L~L~~~~i~~~~l~~i~~~~  212 (322)
                      ++|++|+|++|.++++++.+++..+
T Consensus         2 ~~L~~LdL~~N~i~~~G~~~L~~~L   26 (28)
T smart00368        2 PSLRELDLSNNKLGDEGARALAEAL   26 (28)
T ss_pred             CccCEEECCCCCCCHHHHHHHHHHh
Confidence            6799999999999999998887654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.27  E-value=0.0088  Score=57.35  Aligned_cols=141  Identities=16%  Similarity=0.163  Sum_probs=87.5

Q ss_pred             eeEEEecCCC-ChH---HHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCC----CccEEeccCCCCCCHHHHHHHHhc
Q 020754           83 LRKLCVSGLH-NDM---MFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLS----AVTFLDLSYCSKIGAPALEAIGKH  154 (322)
Q Consensus        83 l~~L~l~~~~-~~~---~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~----~L~~L~l~~c~~i~~~~l~~l~~~  154 (322)
                      +.++.+.++. .+.   .+.......++|..|+++++.+.+.+...+...++    .|+.|.+..| .++..+...++..
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAAV  167 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHHH
Confidence            5666776654 232   33333445778999999999888888888877654    3577888886 5666655444333


Q ss_pred             ---CCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcC---CC-CCEEeecCCC
Q 020754          155 ---CKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSC---AL-LEFLDLRGCW  224 (322)
Q Consensus       155 ---c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~---~~-L~~L~L~~c~  224 (322)
                         +..|+.+++..+.+...|...........++...++++|+|.+|.++......+....   +. +..|++..|.
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~  244 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK  244 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC
Confidence               5667777776665543232222222222112355799999999998877666555433   44 5568887764

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=94.16  E-value=0.1  Score=49.91  Aligned_cols=128  Identities=21%  Similarity=0.240  Sum_probs=66.4

Q ss_pred             ChhHHHHHHHHHHHhcCCCeeEEEecCCCChH-------------------HHHHHHHhCCCCCEEecCCCCC-CHHHHH
Q 020754           64 QPDHLDRMVEMLITRSSGSLRKLCVSGLHNDM-------------------MFSLIAENAGSLQTLRLPRSEM-SDSIVA  123 (322)
Q Consensus        64 ~~~~~~~~l~~l~~r~~~~l~~L~l~~~~~~~-------------------~l~~l~~~~~~L~~L~L~~~~i-~~~~l~  123 (322)
                      .++.+..+-..+..|..+.=+.|+|.+...|.                   .+..+..+.|.+.+++|++|++ .-..+.
T Consensus       158 kpe~IE~l~~v~~kRyd~~~~~LDL~nl~~DPel~~~di~~~l~~rn~M~~~L~~~~~n~p~i~sl~lsnNrL~~Ld~~s  237 (585)
T KOG3763|consen  158 KPEEIEILKLVMNKRYDVSQQALDLQNLRFDPELVNRDILMVLNKRNCMAAVLKHIEENFPEILSLSLSNNRLYHLDALS  237 (585)
T ss_pred             CHHHHHHHHHHHhccccHHHhhhhhhccccChhhhhccchhhcccchhhHHHHHHhhcCCcceeeeecccchhhchhhhh
Confidence            34555554455555665555666666543222                   3344556677888888888743 335567


Q ss_pred             HHHhcCCCccEEeccCCCCCCHHHHHHHHh-cCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEE
Q 020754          124 QIAGRLSAVTFLDLSYCSKIGAPALEAIGK-HCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRL  193 (322)
Q Consensus       124 ~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~-~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L  193 (322)
                      .+++..|+|+.|+|++ +..--.....+.+ ....|++|-+..+++- ........-+.+|.+.+|+|..|
T Consensus       238 slsq~apklk~L~LS~-N~~~~~~~~el~K~k~l~Leel~l~GNPlc-~tf~~~s~yv~~i~~~FPKL~~L  306 (585)
T KOG3763|consen  238 SLSQIAPKLKTLDLSH-NHSKISSESELDKLKGLPLEELVLEGNPLC-TTFSDRSEYVSAIRELFPKLLRL  306 (585)
T ss_pred             HHHHhcchhheeeccc-chhhhcchhhhhhhcCCCHHHeeecCCccc-cchhhhHHHHHHHHHhcchheee
Confidence            7777788888888887 4111111111111 2244555554433331 00011122344566666766655

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=93.58  E-value=0.1  Score=28.89  Aligned_cols=24  Identities=29%  Similarity=0.434  Sum_probs=13.4

Q ss_pred             CCccEEeccCCCCCCHHHHHHHHhc
Q 020754          130 SAVTFLDLSYCSKIGAPALEAIGKH  154 (322)
Q Consensus       130 ~~L~~L~l~~c~~i~~~~l~~l~~~  154 (322)
                      ++|++|+|++ +.+++.+..++++.
T Consensus         2 ~~L~~LdL~~-N~i~~~G~~~L~~~   25 (28)
T smart00368        2 PSLRELDLSN-NKLGDEGARALAEA   25 (28)
T ss_pred             CccCEEECCC-CCCCHHHHHHHHHH
Confidence            4455666665 55565555555543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=93.50  E-value=0.1  Score=52.94  Aligned_cols=10  Identities=10%  Similarity=0.282  Sum_probs=5.9

Q ss_pred             CeeEEEecCC
Q 020754           82 SLRKLCVSGL   91 (322)
Q Consensus        82 ~l~~L~l~~~   91 (322)
                      +|+.|+++++
T Consensus       221 nL~~L~Ls~N  230 (754)
T PRK15370        221 NIKTLYANSN  230 (754)
T ss_pred             CCCEEECCCC
Confidence            4666666543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=93.06  E-value=0.023  Score=53.69  Aligned_cols=107  Identities=26%  Similarity=0.314  Sum_probs=59.7

Q ss_pred             hCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCH-HHHHHHHhcCCCcceeeccccccCCCCCCCCchHHH
Q 020754          103 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGA-PALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN  181 (322)
Q Consensus       103 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~-~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~  181 (322)
                      .+.+|+.|.+..+.|..  +..+...+++|++|++++ +.|+. .++..    ++.|+.|.+..+.+.         .+.
T Consensus        93 ~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~-N~I~~i~~l~~----l~~L~~L~l~~N~i~---------~~~  156 (414)
T KOG0531|consen   93 KLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSF-NKITKLEGLST----LTLLKELNLSGNLIS---------DIS  156 (414)
T ss_pred             cccceeeeeccccchhh--cccchhhhhcchheeccc-cccccccchhh----ccchhhheeccCcch---------hcc
Confidence            35677777777775432  222134567788888877 66654 22322    233666665544331         011


Q ss_pred             HHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcC
Q 020754          182 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVK  227 (322)
Q Consensus       182 ~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~  227 (322)
                      .+ ..+++|+.+++++|.++...-.. +..+..|+.+.+.++....
T Consensus       157 ~~-~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~  200 (414)
T KOG0531|consen  157 GL-ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE  200 (414)
T ss_pred             CC-ccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence            11 12677777777777765543321 4567777777777765443

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=92.75  E-value=0.09  Score=54.32  Aligned_cols=111  Identities=21%  Similarity=0.122  Sum_probs=60.1

Q ss_pred             HhCCCCCEEecCCCCC-CHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHH
Q 020754          102 ENAGSLQTLRLPRSEM-SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA  180 (322)
Q Consensus       102 ~~~~~L~~L~L~~~~i-~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~  180 (322)
                      ..+++|++|-+.++.- -..+...+...+|.|+.|+|++|...+ +....+ ..+-+|+.|.+..+.+.     ....+ 
T Consensus       542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~-~LP~~I-~~Li~LryL~L~~t~I~-----~LP~~-  613 (889)
T KOG4658|consen  542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS-KLPSSI-GELVHLRYLDLSDTGIS-----HLPSG-  613 (889)
T ss_pred             CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC-cCChHH-hhhhhhhcccccCCCcc-----ccchH-
Confidence            3477888888888631 112223345567999999999854432 222222 23456777765544321     11112 


Q ss_pred             HHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020754          181 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  224 (322)
Q Consensus       181 ~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~  224 (322)
                        + ..+.+|.+|++..+..... +..+...+++|++|.+.+..
T Consensus       614 --l-~~Lk~L~~Lnl~~~~~l~~-~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  614 --L-GNLKKLIYLNLEVTGRLES-IPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             --H-HHHHhhheecccccccccc-ccchhhhcccccEEEeeccc
Confidence              2 2455677777776531111 13344457777777776643

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.66  E-value=0.066  Score=51.43  Aligned_cols=117  Identities=22%  Similarity=0.246  Sum_probs=49.1

Q ss_pred             CCCCCEEecCCCCCCHHHHHHHHhc-------CCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCC
Q 020754          104 AGSLQTLRLPRSEMSDSIVAQIAGR-------LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ  176 (322)
Q Consensus       104 ~~~L~~L~L~~~~i~~~~l~~l~~~-------~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~  176 (322)
                      +..|+.+++..|.+...+...+.+.       ..++++|.+++| .++......+....+..+++...   ++...+.+.
T Consensus       171 ~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~e---l~l~~n~l~  246 (478)
T KOG4308|consen  171 NEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRE---LDLASNKLG  246 (478)
T ss_pred             ccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHH---HHHHhcCcc
Confidence            5556666666654444433333222       234566666654 44444444443333322221100   011111122


Q ss_pred             chHHHHHHhcC----CCCCEEEecCcccCHHHHHHH---HhcCCCCCEEeecCCC
Q 020754          177 DDEANAIASTM----PKLKRLEMAYHVISTEIVLKI---LSSCALLEFLDLRGCW  224 (322)
Q Consensus       177 ~~~~~~l~~~~----p~L~~L~L~~~~i~~~~l~~i---~~~~~~L~~L~L~~c~  224 (322)
                      +.++..+.+.+    ++++++.+..|.|++.+...+   +..|++++.|.++.+.
T Consensus       247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~  301 (478)
T KOG4308|consen  247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNP  301 (478)
T ss_pred             hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCc
Confidence            23333333222    234555555555554443322   2344555555555543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.62  E-value=0.058  Score=49.74  Aligned_cols=39  Identities=23%  Similarity=0.272  Sum_probs=31.7

Q ss_pred             cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCc
Q 020754          186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  226 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~  226 (322)
                      .|.+|+.|+|..|.+  ..+..++.+|.+|++|++.|++.-
T Consensus       503 nm~nL~tLDL~nNdl--q~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  503 NMRNLTTLDLQNNDL--QQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             hhhhcceeccCCCch--hhCChhhccccceeEEEecCCccC
Confidence            688999999999874  345667889999999999998643

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=92.36  E-value=0.035  Score=43.71  Aligned_cols=103  Identities=19%  Similarity=0.205  Sum_probs=53.2

Q ss_pred             eeEEEecCCCC---hHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020754           83 LRKLCVSGLHN---DMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV  159 (322)
Q Consensus        83 l~~L~l~~~~~---~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~  159 (322)
                      +..++|+.|.-   ..++.. ......|+.++|++|.+.+- -..+...+|.++.|++.. +.+++--.+ + ...|.|+
T Consensus        29 ~h~ldLssc~lm~i~davy~-l~~~~el~~i~ls~N~fk~f-p~kft~kf~t~t~lNl~~-neisdvPeE-~-Aam~aLr  103 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYM-LSKGYELTKISLSDNGFKKF-PKKFTIKFPTATTLNLAN-NEISDVPEE-L-AAMPALR  103 (177)
T ss_pred             hhhcccccchhhHHHHHHHH-HhCCceEEEEecccchhhhC-CHHHhhccchhhhhhcch-hhhhhchHH-H-hhhHHhh
Confidence            34466666642   112222 22345677778877743321 224556677888888887 666543333 2 2345566


Q ss_pred             eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcc
Q 020754          160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV  199 (322)
Q Consensus       160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~  199 (322)
                      .|++..++++        .....+++ +.+|-.|+..++.
T Consensus       104 ~lNl~~N~l~--------~~p~vi~~-L~~l~~Lds~~na  134 (177)
T KOG4579|consen  104 SLNLRFNPLN--------AEPRVIAP-LIKLDMLDSPENA  134 (177)
T ss_pred             hcccccCccc--------cchHHHHH-HHhHHHhcCCCCc
Confidence            6655544441        23334442 4555555555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=91.50  E-value=0.15  Score=47.65  Aligned_cols=36  Identities=31%  Similarity=0.351  Sum_probs=19.0

Q ss_pred             cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020754          186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  224 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~  224 (322)
                      .+++|+.|++++|.+++...   +....+|+.|++++..
T Consensus       253 ~l~~l~~L~~s~n~i~~i~~---~~~~~~l~~L~~s~n~  288 (394)
T COG4886         253 NLSNLETLDLSNNQISSISS---LGSLTNLRELDLSGNS  288 (394)
T ss_pred             cccccceecccccccccccc---ccccCccCEEeccCcc
Confidence            45556666666665544322   3344566666665543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=91.42  E-value=0.078  Score=41.77  Aligned_cols=125  Identities=18%  Similarity=0.212  Sum_probs=70.0

Q ss_pred             CCCCEEecCCCCCC--HHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHH
Q 020754          105 GSLQTLRLPRSEMS--DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  182 (322)
Q Consensus       105 ~~L~~L~L~~~~i~--~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~  182 (322)
                      ..+..++|+.|.+-  ...+..+.. -..|+..+|++ +.+. +.-..+...+|-++.|++..+.+        .+....
T Consensus        27 kE~h~ldLssc~lm~i~davy~l~~-~~el~~i~ls~-N~fk-~fp~kft~kf~t~t~lNl~~nei--------sdvPeE   95 (177)
T KOG4579|consen   27 KELHFLDLSSCQLMYIADAVYMLSK-GYELTKISLSD-NGFK-KFPKKFTIKFPTATTLNLANNEI--------SDVPEE   95 (177)
T ss_pred             HHhhhcccccchhhHHHHHHHHHhC-CceEEEEeccc-chhh-hCCHHHhhccchhhhhhcchhhh--------hhchHH
Confidence            35667788888433  233444433 36677778876 4432 22335555556777776654433        222334


Q ss_pred             HHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeee
Q 020754          183 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVL  243 (322)
Q Consensus       183 l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L  243 (322)
                      ++ ++|.|+.|+++.|.+... ..-++ .+.+|-.|+.-++.....+-..+....+.|..|
T Consensus        96 ~A-am~aLr~lNl~~N~l~~~-p~vi~-~L~~l~~Lds~~na~~eid~dl~~s~~~al~~l  153 (177)
T KOG4579|consen   96 LA-AMPALRSLNLRFNPLNAE-PRVIA-PLIKLDMLDSPENARAEIDVDLFYSSLPALIKL  153 (177)
T ss_pred             Hh-hhHHhhhcccccCccccc-hHHHH-HHHhHHHhcCCCCccccCcHHHhccccHHHHHh
Confidence            54 788899999988876543 22233 366777777766654443434444444444444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=91.31  E-value=0.0029  Score=51.45  Aligned_cols=37  Identities=16%  Similarity=0.218  Sum_probs=22.9

Q ss_pred             cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020754          186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  224 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~  224 (322)
                      .+.+|+.|.+..|.+..  +..=+..+.+|+.|.+.|+.
T Consensus       148 ~lt~lqil~lrdndll~--lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  148 KLTNLQILSLRDNDLLS--LPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             hhcceeEEeeccCchhh--CcHHHHHHHHHHHHhcccce
Confidence            56788888888875321  11222345677888887764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=91.13  E-value=0.19  Score=51.97  Aligned_cols=14  Identities=29%  Similarity=0.206  Sum_probs=8.0

Q ss_pred             CCCCCEEeecCCCC
Q 020754          212 CALLEFLDLRGCWD  225 (322)
Q Consensus       212 ~~~L~~L~L~~c~~  225 (322)
                      +++|+.|.+.+|..
T Consensus       716 l~~L~~L~i~~~~~  729 (889)
T KOG4658|consen  716 LGNLEELSILDCGI  729 (889)
T ss_pred             ccCcceEEEEcCCC
Confidence            34566666666643

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=90.77  E-value=0.034  Score=52.60  Aligned_cols=124  Identities=24%  Similarity=0.270  Sum_probs=76.8

Q ss_pred             HhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHH
Q 020754          102 ENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN  181 (322)
Q Consensus       102 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~  181 (322)
                      ..+.+++.+.+..+.+..  +..-...+++|+.|++.+ +.+..  +..+...+++|+.|.++.+.+.         .+.
T Consensus        69 ~~l~~l~~l~l~~n~i~~--~~~~l~~~~~l~~l~l~~-n~i~~--i~~~l~~~~~L~~L~ls~N~I~---------~i~  134 (414)
T KOG0531|consen   69 ESLTSLKELNLRQNLIAK--ILNHLSKLKSLEALDLYD-NKIEK--IENLLSSLVNLQVLDLSFNKIT---------KLE  134 (414)
T ss_pred             HHhHhHHhhccchhhhhh--hhcccccccceeeeeccc-cchhh--cccchhhhhcchheeccccccc---------ccc
Confidence            345667777777765544  122224568899999987 55543  2222456789999988766541         122


Q ss_pred             HHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeC
Q 020754          182 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  244 (322)
Q Consensus       182 ~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~  244 (322)
                      .+. .++.|+.|++.+|.|+...-.   ..++.|+.++++++......... ...+.+|+.+.
T Consensus       135 ~l~-~l~~L~~L~l~~N~i~~~~~~---~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~  192 (414)
T KOG0531|consen  135 GLS-TLTLLKELNLSGNLISDISGL---ESLKSLKLLDLSYNRIVDIENDE-LSELISLEELD  192 (414)
T ss_pred             chh-hccchhhheeccCcchhccCC---ccchhhhcccCCcchhhhhhhhh-hhhccchHHHh
Confidence            232 566799999999987654322   23789999999988655332211 34556666553

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=90.29  E-value=0.18  Score=47.17  Aligned_cols=103  Identities=25%  Similarity=0.259  Sum_probs=51.1

Q ss_pred             CCCCEEecCCCCCCHHHHHHHHhcC-CCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH
Q 020754          105 GSLQTLRLPRSEMSDSIVAQIAGRL-SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  183 (322)
Q Consensus       105 ~~L~~L~L~~~~i~~~~l~~l~~~~-~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l  183 (322)
                      +.++.|.+.++.+++-  ....... ++|+.|++++ +.+..-.  .-...+++|+.|.++.+.+         ..+...
T Consensus       116 ~~l~~L~l~~n~i~~i--~~~~~~~~~nL~~L~l~~-N~i~~l~--~~~~~l~~L~~L~l~~N~l---------~~l~~~  181 (394)
T COG4886         116 TNLTSLDLDNNNITDI--PPLIGLLKSNLKELDLSD-NKIESLP--SPLRNLPNLKNLDLSFNDL---------SDLPKL  181 (394)
T ss_pred             cceeEEecCCcccccC--ccccccchhhcccccccc-cchhhhh--hhhhccccccccccCCchh---------hhhhhh
Confidence            5677777777655432  2222223 2677777776 4544321  2234567777776554433         111111


Q ss_pred             HhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCC
Q 020754          184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC  223 (322)
Q Consensus       184 ~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c  223 (322)
                      ....++|+.|.++++.+++-..  .......|++|.++++
T Consensus       182 ~~~~~~L~~L~ls~N~i~~l~~--~~~~~~~L~~l~~~~N  219 (394)
T COG4886         182 LSNLSNLNNLDLSGNKISDLPP--EIELLSALEELDLSNN  219 (394)
T ss_pred             hhhhhhhhheeccCCccccCch--hhhhhhhhhhhhhcCC
Confidence            1145677777777766443211  1112233555555554

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=90.08  E-value=0.46  Score=45.58  Aligned_cols=90  Identities=26%  Similarity=0.271  Sum_probs=62.5

Q ss_pred             HHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCc--ccCHHHHHHHHh-cCCCCCEEeecCCC
Q 020754          148 LEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYH--VISTEIVLKILS-SCALLEFLDLRGCW  224 (322)
Q Consensus       148 l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~--~i~~~~l~~i~~-~~~~L~~L~L~~c~  224 (322)
                      +..+....|.+.++.|+.+.+      ..-+.+..++...|+|+.|+|++|  .+...  ..+-+ +...|+.|.+.|++
T Consensus       210 L~~~~~n~p~i~sl~lsnNrL------~~Ld~~sslsq~apklk~L~LS~N~~~~~~~--~el~K~k~l~Leel~l~GNP  281 (585)
T KOG3763|consen  210 LKHIEENFPEILSLSLSNNRL------YHLDALSSLSQIAPKLKTLDLSHNHSKISSE--SELDKLKGLPLEELVLEGNP  281 (585)
T ss_pred             HHHhhcCCcceeeeecccchh------hchhhhhHHHHhcchhheeecccchhhhcch--hhhhhhcCCCHHHeeecCCc
Confidence            455566678888887766654      233567778889999999999998  43332  22222 45789999999988


Q ss_pred             CcCC--Ch----HHHHhcCCCCeeeCC
Q 020754          225 DVKL--DD----KFMKGNFPNLKVLGP  245 (322)
Q Consensus       225 ~~~~--~~----~~l~~~~~~Lk~L~~  245 (322)
                      .++.  +.    ..+.+.+|+|..|+.
T Consensus       282 lc~tf~~~s~yv~~i~~~FPKL~~LDG  308 (585)
T KOG3763|consen  282 LCTTFSDRSEYVSAIRELFPKLLRLDG  308 (585)
T ss_pred             cccchhhhHHHHHHHHHhcchheeecC
Confidence            7652  11    245789999999953

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=89.55  E-value=0.6  Score=47.52  Aligned_cols=100  Identities=12%  Similarity=0.093  Sum_probs=58.1

Q ss_pred             CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHH
Q 020754          105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  184 (322)
Q Consensus       105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~  184 (322)
                      ++|+.|.+.+|.++.  +..  .-+++|+.|++++| .++. ....+   .++|+.|.++.+.+.  .  + ..   .+.
T Consensus       325 ~sL~~L~Ls~N~Lt~--LP~--~l~~sL~~L~Ls~N-~L~~-LP~~l---p~~L~~LdLs~N~Lt--~--L-P~---~l~  387 (754)
T PRK15370        325 PGLKTLEAGENALTS--LPA--SLPPELQVLDVSKN-QITV-LPETL---PPTITTLDVSRNALT--N--L-PE---NLP  387 (754)
T ss_pred             ccceeccccCCcccc--CCh--hhcCcccEEECCCC-CCCc-CChhh---cCCcCEEECCCCcCC--C--C-CH---hHH
Confidence            578888888885543  111  11368888888874 4542 11111   267888877665442  1  1 11   111


Q ss_pred             hcCCCCCEEEecCcccCH--HHHHHHHhcCCCCCEEeecCCC
Q 020754          185 STMPKLKRLEMAYHVIST--EIVLKILSSCALLEFLDLRGCW  224 (322)
Q Consensus       185 ~~~p~L~~L~L~~~~i~~--~~l~~i~~~~~~L~~L~L~~c~  224 (322)
                         ++|+.|++++|.++.  ..+......++++..|+|.++.
T Consensus       388 ---~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        388 ---AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             ---HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence               257777888877542  2344455566788888888775

>PF13013 F-box-like_2: F-box-like domain

Probab=88.96  E-value=0.67  Score=34.94  Aligned_cols=30  Identities=23%  Similarity=0.304  Sum_probs=25.7

Q ss_pred             CcccCCHHHHHHHHccCChHHHhhhhhhhhH
Q 020754            9 HWDELIPDALGLIFRNLSLQEVLTVIPGVCK   39 (322)
Q Consensus         9 ~w~~LP~eiL~~IF~~L~~~~~l~~~~~VCk   39 (322)
                      ...+||.|++..||.+.+..+.+. ..+.|+
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~-l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLA-LSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHH-HHHHHH
Confidence            377899999999999999999877 466676

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=88.96  E-value=0.16  Score=49.51  Aligned_cols=42  Identities=19%  Similarity=0.381  Sum_probs=36.1

Q ss_pred             cccCCHHHHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCcee
Q 020754           10 WDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQ   52 (322)
Q Consensus        10 w~~LP~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw~   52 (322)
                      ...||.|+...||.+|+.+.++. +++||+.|+.++.+...|.
T Consensus       108 i~~lp~el~~~il~~Ld~~~l~~-~~~v~~~w~~~~~~~~~~~  149 (537)
T KOG0274|consen  108 LSLLPSELSLHILSFLDGRDLLA-VRQVCRNWNKLLDDDKVWW  149 (537)
T ss_pred             hhcccchhcccccccCCHHHhhh-hhhhcchhhhhhhccchhh
Confidence            34699999999999999999888 7999999999998644444

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=88.94  E-value=0.2  Score=46.20  Aligned_cols=86  Identities=14%  Similarity=0.023  Sum_probs=47.7

Q ss_pred             HhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChH
Q 020754          152 GKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDK  231 (322)
Q Consensus       152 ~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~  231 (322)
                      .+.+|+|+.|+++.+.++.    + .++  ++ .....|++|.|..|++.... ...++++.+|+.|+|.++...+... 
T Consensus       270 f~~L~~L~~lnlsnN~i~~----i-~~~--aF-e~~a~l~eL~L~~N~l~~v~-~~~f~~ls~L~tL~L~~N~it~~~~-  339 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNKITR----I-EDG--AF-EGAAELQELYLTRNKLEFVS-SGMFQGLSGLKTLSLYDNQITTVAP-  339 (498)
T ss_pred             HhhcccceEeccCCCccch----h-hhh--hh-cchhhhhhhhcCcchHHHHH-HHhhhccccceeeeecCCeeEEEec-
Confidence            4556778888766554421    0 111  12 24457888888888754322 2345677888888888875443222 


Q ss_pred             HHHhcCCCCeeeCCcc
Q 020754          232 FMKGNFPNLKVLGPFV  247 (322)
Q Consensus       232 ~l~~~~~~Lk~L~~~~  247 (322)
                      ..++....|.+|.+..
T Consensus       340 ~aF~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  340 GAFQTLFSLSTLNLLS  355 (498)
T ss_pred             ccccccceeeeeehcc
Confidence            2234445555555444

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=87.27  E-value=0.51  Score=22.72  Aligned_cols=11  Identities=36%  Similarity=0.265  Sum_probs=4.5

Q ss_pred             CCCEEeecCCC
Q 020754          214 LLEFLDLRGCW  224 (322)
Q Consensus       214 ~L~~L~L~~c~  224 (322)
                      +|+.|+|++|.
T Consensus         2 ~L~~L~l~~n~   12 (17)
T PF13504_consen    2 NLRTLDLSNNR   12 (17)
T ss_dssp             T-SEEEETSS-
T ss_pred             ccCEEECCCCC
Confidence            44555555543

...

>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]

Probab=84.67  E-value=2.6  Score=38.13  Aligned_cols=96  Identities=19%  Similarity=0.163  Sum_probs=63.4

Q ss_pred             HHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH---HhcCCCCCEEEe
Q 020754          119 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI---ASTMPKLKRLEM  195 (322)
Q Consensus       119 ~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l---~~~~p~L~~L~L  195 (322)
                      +..+..+-..=|.|+..+|+....|+...+..+.+.+.+=++.+.    +.+.+-...+..+.++   .+.++.|++|++
T Consensus       187 e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~----Fsla~tr~~d~vA~a~a~ml~~n~sl~slnv  262 (353)
T KOG3735|consen  187 ESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKK----FSLANTRSSDPVAFAIAEMLKENKSLTSLNV  262 (353)
T ss_pred             HHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhh----hhhhcccCCchhHHHHHHHHhhcchhhheec
Confidence            344555555668999999988777888777777666544443321    1222222333444444   456899999999


Q ss_pred             cCcccCHHHHHHHHhcCCCCCEE
Q 020754          196 AYHVISTEIVLKILSSCALLEFL  218 (322)
Q Consensus       196 ~~~~i~~~~l~~i~~~~~~L~~L  218 (322)
                      .+|.||..++++++..+..=++|
T Consensus       263 esnFItg~gi~a~~~al~~n~tl  285 (353)
T KOG3735|consen  263 ESNFITGLGIMALLRALQSNKSL  285 (353)
T ss_pred             cccccccHHHHHHHHHHhccchh
Confidence            99999999999999866543333

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=82.99  E-value=0.94  Score=24.55  Aligned_cols=25  Identities=36%  Similarity=0.553  Sum_probs=17.3

Q ss_pred             CCCEEEecCcccCHH-HHHHHHhcCC
Q 020754          189 KLKRLEMAYHVISTE-IVLKILSSCA  213 (322)
Q Consensus       189 ~L~~L~L~~~~i~~~-~l~~i~~~~~  213 (322)
                      +||+|.|....+.++ .+..++.+||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            477788877765544 5777777776

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=82.52  E-value=1  Score=41.69  Aligned_cols=59  Identities=20%  Similarity=0.125  Sum_probs=39.5

Q ss_pred             hcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          185 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       185 ~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      +.+|+|+.|+|++|.|+...- .-+.+...|+.|.|..+..-. -...+++...+|++|.+
T Consensus       271 ~~L~~L~~lnlsnN~i~~i~~-~aFe~~a~l~eL~L~~N~l~~-v~~~~f~~ls~L~tL~L  329 (498)
T KOG4237|consen  271 KKLPNLRKLNLSNNKITRIED-GAFEGAAELQELYLTRNKLEF-VSSGMFQGLSGLKTLSL  329 (498)
T ss_pred             hhcccceEeccCCCccchhhh-hhhcchhhhhhhhcCcchHHH-HHHHhhhccccceeeee
Confidence            478888888888887765432 234467788888887764221 22445678888888875

>PRK15386 type III secretion protein GogB; Provisional

Probab=82.40  E-value=2.5  Score=39.73  Aligned_cols=69  Identities=9%  Similarity=0.098  Sum_probs=40.4

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCc
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL  158 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L  158 (322)
                      +..+++|++++|. -..+.   .--++|++|.+.+| .++.  +....  .++|+.|.+++|..+.        .--++|
T Consensus        51 ~~~l~~L~Is~c~-L~sLP---~LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L~--------sLP~sL  114 (426)
T PRK15386         51 ARASGRLYIKDCD-IESLP---VLPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEIS--------GLPESV  114 (426)
T ss_pred             hcCCCEEEeCCCC-CcccC---CCCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCccccc--------cccccc
Confidence            3668899998872 11111   22236999999887 4321  11111  2688999999886553        112456


Q ss_pred             ceeecc
Q 020754          159 VVLCRN  164 (322)
Q Consensus       159 ~~L~l~  164 (322)
                      +.|.+.
T Consensus       115 e~L~L~  120 (426)
T PRK15386        115 RSLEIK  120 (426)
T ss_pred             ceEEeC
Confidence            766653

>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins

Probab=82.37  E-value=1.1  Score=33.04  Aligned_cols=25  Identities=20%  Similarity=0.222  Sum_probs=23.0

Q ss_pred             CCcccCCHHHHHHHHccCChHHHhh
Q 020754            8 RHWDELIPDALGLIFRNLSLQEVLT   32 (322)
Q Consensus         8 ~~w~~LP~eiL~~IF~~L~~~~~l~   32 (322)
                      ..|..||.||-..|+++|+..|+..
T Consensus        70 ~~w~~LP~EIk~~Il~~L~~~dL~~   94 (97)
T PF09372_consen   70 NYWNILPIEIKYKILEYLSNKDLKK   94 (97)
T ss_pred             CchhhCCHHHHHHHHHcCCHHHHHH
Confidence            6799999999999999999999765

The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.

>PRK15386 type III secretion protein GogB; Provisional

Probab=81.97  E-value=1.2  Score=41.75  Aligned_cols=56  Identities=14%  Similarity=0.144  Sum_probs=36.9

Q ss_pred             HhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeecccc
Q 020754          102 ENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH  166 (322)
Q Consensus       102 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~  166 (322)
                      ..|++++.|.+++|.++.     +..--++|++|.+++|..++.-. ..+   .++|+.|.+..+
T Consensus        49 ~~~~~l~~L~Is~c~L~s-----LP~LP~sLtsL~Lsnc~nLtsLP-~~L---P~nLe~L~Ls~C  104 (426)
T PRK15386         49 EEARASGRLYIKDCDIES-----LPVLPNELTEITIENCNNLTTLP-GSI---PEGLEKLTVCHC  104 (426)
T ss_pred             HHhcCCCEEEeCCCCCcc-----cCCCCCCCcEEEccCCCCcccCC-chh---hhhhhheEccCc
Confidence            347999999999995543     21222579999999997753211 111   257888877644

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=80.93  E-value=0.78  Score=42.59  Aligned_cols=35  Identities=26%  Similarity=0.101  Sum_probs=25.5

Q ss_pred             hcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCCc
Q 020754          210 SSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF  246 (322)
Q Consensus       210 ~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~~  246 (322)
                      .++.+|..|||.++...  .-.-+..+|.+|++|...
T Consensus       502 ~nm~nL~tLDL~nNdlq--~IPp~LgnmtnL~hLeL~  536 (565)
T KOG0472|consen  502 KNMRNLTTLDLQNNDLQ--QIPPILGNMTNLRHLELD  536 (565)
T ss_pred             hhhhhcceeccCCCchh--hCChhhccccceeEEEec
Confidence            46789999999987544  223445799999999653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	322
1fs2_A	272	Insights Into Scf Ubiquitin Ligases From The Struct		3e-06
1fqv_A	336	Insights Into Scf Ubiquitin Ligases From The Struct		2e-05

>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 272

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 100/260 (38%), Gaps = 49/260 (18%)
Query: 10  WDELIPDALGL-IFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHL 68
           WD L PD L L IF  L L E+L V  GVCK W R       WQ +D        +  H+
Sbjct: 9   WDSL-PDELLLGIFSCLCLPELLKV-SGVCKRWYRLASDESLWQTLD------EFRVQHM 60
Query: 69  DRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGR 128
           D          S S+ +  VS LH       I      LQ L L    +SD IV  +A  
Sbjct: 61  DL---------SNSVIE--VSTLHG------ILSQCSKLQNLSLEGLRLSDPIVNTLAKN 103
Query: 129 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL----CRNM----------HPLDTADKL 174
            S +  L+LS CS     AL+ +   C  L  L    C +           H  +T  +L
Sbjct: 104 -SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 162
Query: 175 S--------QDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 226
           +        Q  + + +    P L  L+++  V+      +       L+ L L  C+D+
Sbjct: 163 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI 222
Query: 227 KLDDKFMKGNFPNLKVLGPF 246
             +     G  P LK L  F
Sbjct: 223 IPETLLELGEIPTLKTLQVF 242

>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 336

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 73/283 (25%), Positives = 103/283 (36%), Gaps = 57/283 (20%)
Query: 10  WDELIPDALGL-IFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHL 68
           WD L PD L L IF  L L E+L V  GVCK W R       WQ +D+        PD  
Sbjct: 9   WDSL-PDELLLGIFSCLCLPELLKV-SGVCKRWYRLASDESLWQTLDLT--GKNLHPDVT 64
Query: 69  DRMVEMLITRSSGSLRKLCVSGL---------------HNDMMFSLIA--------ENAG 105
            R++      S G +   C                   H D+  S+I             
Sbjct: 65  GRLL------SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS 118
Query: 106 SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL---- 161
            LQ L L    +SD IV  +A   S +  L+LS CS     AL+ +   C  L  L    
Sbjct: 119 KLQNLSLEGLRLSDPIVNTLAKN-SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSW 177
Query: 162 CRNM----------HPLDTADKLS--------QDDEANAIASTMPKLKRLEMAYHVISTE 203
           C +           H  +T  +L+        Q  + + +    P L  L+++  V+   
Sbjct: 178 CFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKN 237
Query: 204 IVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF 246
              +       L+ L L  C+D+  +     G  P LK L  F
Sbjct: 238 DCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	322
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-25
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-16
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-13
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-12
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-09
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-16
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-05
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	2e-04
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	5e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	7e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score =  103 bits (259), Expect = 1e-25
 Identities = 59/256 (23%), Positives = 92/256 (35%), Gaps = 32/256 (12%)

Query: 9   HWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHL 68
            WD L  + L  IF  L L E+L V  GVCK W R       WQ +D+   +    PD  
Sbjct: 8   SWDSLPDELLLGIFSCLCLPELLKV-SGVCKRWYRLASDESLWQTLDLTGKN--LHPDVT 64

Query: 69  DRMVEMLIT----------------RSSGSLRKLCVSGLH-NDMMFSLIAENAGSLQTLR 111
            R++   +                  S   ++ + +S           I      LQ L 
Sbjct: 65  GRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124

Query: 112 LPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTA 171
           L    +SD IV  +A + S +  L+LS CS     AL+ +   C  L  L      L   
Sbjct: 125 LEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN-----LSWC 178

Query: 172 DKLSQDDEANAIASTMPKLKRLEMA--YHVISTEIVLKILSSCALLEFLDLRGCWDVKLD 229
              ++     A+A     + +L ++     +    +  ++  C  L  LDL     V L 
Sbjct: 179 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDS--VMLK 236

Query: 230 DKFMK--GNFPNLKVL 243
           +   +       L+ L
Sbjct: 237 NDCFQEFFQLNYLQHL 252

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 52.6 bits (126), Expect = 5e-08
 Identities = 22/146 (15%), Positives = 50/146 (34%), Gaps = 14/146 (9%)

Query: 76  ITRSSGSLRKLCVSG---LHNDMMFSLIAENAGSLQTLRLP--RSEMSDSIVAQIAGRLS 130
           +  S   L +L +S         +   +A  + ++  L L   R  +  S ++ +  R  
Sbjct: 163 LLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP 222

Query: 131 AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKL 190
            +  LDLS    +     +        L  L      L     +   +    +   +P L
Sbjct: 223 NLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLS-----LSRCYDII-PETLLELGE-IPTL 274

Query: 191 KRLEMAYHVISTEIVLKILSSCALLE 216
           K L++ + ++    +  +  +   L+
Sbjct: 275 KTLQV-FGIVPDGTLQLLKEALPHLQ 299

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 78.4 bits (193), Expect = 3e-16
 Identities = 50/266 (18%), Positives = 84/266 (31%), Gaps = 39/266 (14%)

Query: 1   MEGESEFR---HWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIE 57
           ME     R        + D +  +   ++  +       VC+ W +          ID E
Sbjct: 1   MEDPDIKRCKLSCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFK----------IDSE 50

Query: 58  EWSNRCQPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAG------------ 105
              +           + L  R   +LR L + G     MF+LI EN G            
Sbjct: 51  TREHVTMALCYTATPDRLSRRFP-NLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISN 109

Query: 106 ---SLQTLRLPRSEMSDSIVAQIA-GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL 161
               L+++   R  +SD  + ++A  R   +  L L  CS      L +I  HC+ +  L
Sbjct: 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL 169

Query: 162 CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAY---HVISTEIVLKILSSCALLEFL 218
                     D        + +A     L+ L         IS + +  I  +C  L  +
Sbjct: 170 LMEESSFSEKD----GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225

Query: 219 DLRGCWDVKLDDKFMKGNFPNLKVLG 244
            +       L+         NL+   
Sbjct: 226 KVGDF--EILELVGFFKAAANLEEFC 249

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 68.0 bits (166), Expect = 8e-13
 Identities = 29/218 (13%), Positives = 67/218 (30%), Gaps = 25/218 (11%)

Query: 44  AVIGPYCW--QEIDIEEWSNRCQPDHLDRMVE----MLITRSSGSLRKLCVSGLH-NDMM 96
            V+  YC   + + IE  ++    +  + +V     + + +    L  + V      +  
Sbjct: 335 EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNES 394

Query: 97  FSLIAENAGSLQTLRLPRSEMSDSI--------VAQIAGRLSAVTFLDLSY-CSKIGAPA 147
              I     +L   RL   +  + I        V  +      +           +    
Sbjct: 395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454

Query: 148 LEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK 207
           L  IG++   +  +               D+     +   P L++LEM     S   +  
Sbjct: 455 LSYIGQYSPNVRWMLLGYVGES-------DEGLMEFSRGCPNLQKLEMRGCCFSERAIAA 507

Query: 208 ILSSCALLEFLDLRGCWDVKLDDKFM--KGNFPNLKVL 243
            ++    L +L ++G          M     + N++++
Sbjct: 508 AVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELI 545

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 65.0 bits (158), Expect = 7e-12
 Identities = 33/202 (16%), Positives = 67/202 (33%), Gaps = 40/202 (19%)

Query: 82  SLRKLCVSGLHNDMMFSLIAENAGSLQTLRL-----------PRSEMSDSIVAQIAGRLS 130
           +L  L    +  D    ++A+    L+ LR+               +S   +  +A    
Sbjct: 319 NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378

Query: 131 AVTFLDLSYCSKIGAPALEAIGKHCKLLVVL--------------------------CRN 164
            + ++ +   S I   +LE+IG + K L                             C+ 
Sbjct: 379 ELEYMAVY-VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKK 437

Query: 165 MHPLDTADKLSQ--DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRG 222
           +       +     D   + I    P ++ + + Y   S E +++    C  L+ L++RG
Sbjct: 438 LRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG 497

Query: 223 CWDVKLDDKFMKGNFPNLKVLG 244
           C   +          P+L+ L 
Sbjct: 498 CCFSERAIAAAVTKLPSLRYLW 519

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 59.2 bits (143), Expect = 6e-10
 Identities = 24/193 (12%), Positives = 61/193 (31%), Gaps = 29/193 (15%)

Query: 76  ITRSSGSLRKLCVSGLHN----DMMFSLIAENAGSLQTLRL---PRSEMSDSIVAQIAGR 128
           I      ++ L +               +A++  SL+ L       +++S   +  IA  
Sbjct: 159 IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218

Query: 129 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLS------------- 175
             ++  + +     +          + +       N         ++             
Sbjct: 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLS 278

Query: 176 --QDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFM 233
               +E   +     ++++L++ Y ++ TE    ++  C  LE L+ R      + D+ +
Sbjct: 279 YMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV----IGDRGL 334

Query: 234 KG---NFPNLKVL 243
           +        LK L
Sbjct: 335 EVLAQYCKQLKRL 347

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 56.5 bits (136), Expect = 5e-09
 Identities = 26/152 (17%), Positives = 48/152 (31%), Gaps = 10/152 (6%)

Query: 76  ITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFL 135
           I R+  SL  + V       +       A +L+      S   D  + +    L     L
Sbjct: 215 IARNCRSLVSVKVGDFEILELVGFFK-AAANLEEFCG-GSLNEDIGMPEKYMNLVFPRKL 272

Query: 136 DLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEM 195
                S +G   +  +      +  L      L+T       ++   +    P L+ LE 
Sbjct: 273 CRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLET-------EDHCTLIQKCPNLEVLET 325

Query: 196 AYHVISTEIVLKILSSCALLEFLDLRGCWDVK 227
             +VI    +  +   C  L+ L +    D +
Sbjct: 326 R-NVIGDRGLEVLAQYCKQLKRLRIERGADEQ 356

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 77.6 bits (191), Expect = 5e-16
 Identities = 46/244 (18%), Positives = 81/244 (33%), Gaps = 27/244 (11%)

Query: 15  PDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHLDRMVEM 74
            + L  +F  + L +    +  VCKSW         W    +      C       ++  
Sbjct: 11  EEVLEHVFSFIQLDKDRNSVSLVCKSWYEIE----RWCRRKVF--IGNCYAVSPATVIRR 64

Query: 75  --------LITRSSGSLRKLCVSGLHNDMMFSL--IAENAGSLQTLRLPRSEMSDSIVAQ 124
                   L  +   +   L   G    +   +  ++ +   L+ +RL R  ++D  +  
Sbjct: 65  FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124

Query: 125 IAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA-NAI 183
           IA        L LS C       L AI   C+ L  L      L  +D         +  
Sbjct: 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELD-----LRESDVDDVSGHWLSHF 179

Query: 184 ASTMPKLKRLEMAYH--VISTEIVLKILSSCALLEFLDLRGCWDVKLDD-KFMKGNFPNL 240
             T   L  L ++     +S   + ++++ C  L+ L L     V L+    +    P L
Sbjct: 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA--VPLEKLATLLQRAPQL 237

Query: 241 KVLG 244
           + LG
Sbjct: 238 EELG 241

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 63.8 bits (155), Expect = 2e-11
 Identities = 33/216 (15%), Positives = 67/216 (31%), Gaps = 44/216 (20%)

Query: 68  LDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEM---------S 118
               +  L+ +    L++L V     D    ++A     L+ LR+  SE          +
Sbjct: 302 QSYDLVKLLCQCP-KLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALT 360

Query: 119 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL----CRNMHPLDTADKL 174
           +  +  ++     +  + L +C ++   AL  I ++   +            P     + 
Sbjct: 361 EQGLVSVSMGCPKLESV-LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419

Query: 175 SQDDEANAIASTMPKLKRLEMAYHV------------------------ISTEIVLKILS 210
             D    AI      L+RL ++  +                         S   +  +LS
Sbjct: 420 L-DIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLS 478

Query: 211 SCALLEFLDLRGCWDVKLDDKFMK--GNFPNLKVLG 244
            C  L  L++R C     D   +        ++ L 
Sbjct: 479 GCDSLRKLEIRDCP--FGDKALLANASKLETMRSLW 512

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 62.2 bits (151), Expect = 5e-11
 Identities = 24/173 (13%), Positives = 51/173 (29%), Gaps = 6/173 (3%)

Query: 61  NRCQPDHLDRMVEMLITRSSGSLRKLCVSGLHN--DMMFSLIAENAGSLQTLRLPRSEMS 118
                +    +   L    SG     C+SG  +        +      L TL L  + + 
Sbjct: 243 GGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ 302

Query: 119 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ-- 176
              + ++  +   +  L +     I    LE +   CK L  L          +      
Sbjct: 303 SYDLVKLLCQCPKLQRLWV--LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALT 360

Query: 177 DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLD 229
           +    +++   PKL+ +      ++   ++ I  +   +    L        D
Sbjct: 361 EQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 61.8 bits (150), Expect = 9e-11
 Identities = 36/204 (17%), Positives = 69/204 (33%), Gaps = 27/204 (13%)

Query: 50  CWQEIDIEEWSNRCQPDHLDRMVEMLITRSSGSLRKLCVSGLH---NDMMFSLIAENAGS 106
             +E+D+ E       D +          +  SL  L +S L    +      +     +
Sbjct: 157 NLKELDLRE----SDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPN 212

Query: 107 LQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAP----ALEAIGKHCKLLVVL- 161
           L++L+L R+      +A +  R   +  L     +    P     L      CK L  L 
Sbjct: 213 LKSLKLNRAV-PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS 271

Query: 162 -CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDL 220
              +                 A+ S   +L  L ++Y  + +  ++K+L  C  L+ L +
Sbjct: 272 GFWDAV----------PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV 321

Query: 221 RGCW-DVKLDDKFMKGNFPNLKVL 243
                D  L  + +     +L+ L
Sbjct: 322 LDYIEDAGL--EVLASTCKDLREL 343

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 57.2 bits (138), Expect = 3e-09
 Identities = 29/172 (16%), Positives = 56/172 (32%), Gaps = 30/172 (17%)

Query: 76  ITRSSGSLRKLCVSGLHN-----------DMMFSLIAENAGSLQTLRLPRSEMSDSIVAQ 124
           I R+  ++ +  +  +             D+ F  I E+   L+ L L    ++D +   
Sbjct: 392 IARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL-SGLLTDKVFEY 450

Query: 125 IAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL----CRNMHPLDTADKLSQDDEA 180
           I      +  L +++        +  +   C  L  L    C              D   
Sbjct: 451 IGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCPFG-----------DKAL 498

Query: 181 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALL--EFLDLRGCWDVKLDD 230
            A AS +  ++ L M+   +S      +      L  E +D RG  D + + 
Sbjct: 499 LANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAPDSRPES 550

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 3e-07
 Identities = 55/372 (14%), Positives = 107/372 (28%), Gaps = 105/372 (28%)

Query: 2   EGESEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSN 61
           +  S  +     I   L  + ++   +  L V+  V  +          W   ++     
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK--------AWNAFNL----- 264

Query: 62  RCQPDHLDRMVEMLI-TRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDS 120
            C+         +L+ TR       L  +   +    SL   +        L   E   S
Sbjct: 265 SCK---------ILLTTRFKQVTDFLSAATTTH---ISLDHHSMT------LTPDE-VKS 305

Query: 121 IVAQIAGRLSAVTFLDLSYCSKIGAP-ALEAIGKHCKLLVVLCRNMHPLDTAD---KLSQ 176
           ++ +           DL        P  L  I +         R+   L T D    ++ 
Sbjct: 306 LLLKYLD----CRPQDLPREVLTTNPRRLSIIAE-------SIRDG--LATWDNWKHVNC 352

Query: 177 DDEANAIASTMPKLKRLEM--AYHVIS--------TEIVLKIL-------------SSCA 213
           D     I S++  L+  E    +  +S          I+L ++             +   
Sbjct: 353 DKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH 412

Query: 214 LLEFLDLRGC------WDVKLDDKFMKGNFPNLKVLGPFVMDYYEIN---DWDDCS-DYS 263
               ++ +          + L+   +K    N   L   ++D+Y I    D DD    Y 
Sbjct: 413 KYSLVEKQPKESTISIPSIYLE---LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469

Query: 264 DG--SEYLAWEFLAGEMGDYDD-------DDE------IYEGM-WDDEGRLEEL--ELRF 305
           D     ++       E  +          D         ++   W+  G +     +L+F
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529

Query: 306 YDG-IEEDAGIY 316
           Y   I ++   Y
Sbjct: 530 YKPYICDNDPKY 541

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 1e-04
 Identities = 48/312 (15%), Positives = 90/312 (28%), Gaps = 90/312 (28%)

Query: 25  LSLQEVLTVI----PGVCKSWRRAVIGPYCWQEIDIEE-------W---SNRCQPDHLDR 70
           L L+    V+     G  K+W   V    C     ++        W    N   P+ +  
Sbjct: 145 LELRPAKNVLIDGVLGSGKTW---VALDVC-LSYKVQCKMDFKIFWLNLKNCNSPETV-- 198

Query: 71  MVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLS 130
            +EML        +KL       D  ++     +     ++L    +   +   +  +  
Sbjct: 199 -LEML--------QKLL---YQIDPNWT---SRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 131 AVTFLDLS--YCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMP 188
               L L     +K       A    CK+L+          T  K       + +++   
Sbjct: 244 ENCLLVLLNVQNAKA----WNAFNLSCKILLT---------TRFK----QVTDFLSAATT 286

Query: 189 KLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFP-NLKVLGPFV 247
               L+     ++ + V  +L         DL          + +    P  L ++   +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP---------REVLTTNPRRLSIIAESI 337

Query: 248 MDYYEINDWDDCSDYSDGSEYLAWEFLAGEMGDYDDDDEIYEGMWDDEGRLEELELR--F 305
            D   +  WD+            W+ +     + D    I E   +    LE  E R  F
Sbjct: 338 RD--GLATWDN------------WKHV-----NCDKLTTIIESSLNV---LEPAEYRKMF 375

Query: 306 YD-GI-EEDAGI 315
               +    A I
Sbjct: 376 DRLSVFPPSAHI 387

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 23/140 (16%), Positives = 49/140 (35%), Gaps = 23/140 (16%)

Query: 106 SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM 165
            +Q+L +   E+SD+  A++   L     + L  C  +     + I      L V    +
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDI---SSALRV-NPAL 58

Query: 166 HPLDTADKLS----QDDEANAIASTM----PKLKRLEMAYHVISTEIVLKI---LSSCAL 214
             L+    L      D   + +   +     K+++L +    ++      +   L +   
Sbjct: 59  AELN----LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT 114

Query: 215 LEFLDLRGCWDVKLDDKFMK 234
           L+ L L       L D  ++
Sbjct: 115 LQELHLSDN---LLGDAGLQ 131

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 35/173 (20%), Positives = 66/173 (38%), Gaps = 23/173 (13%)

Query: 79  SSGSLRKLCVSGLHNDMMFSLIAENAGS---LQTLRLPRSEMSDSIVAQIAGRLSAVTFL 135
               +  + +S    ++ FS ++ +  S   L++L L  S ++ S+        +++T L
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG--FKCSASLTSL 105

Query: 136 DLSYCSKIGA-PALEAIGKHCKLLVVL--CRNMHPLDTADKLSQDDEANAIASTMPKLKR 192
           DLS  S  G    L ++G  C  L  L    N         L    + +     +  L+ 
Sbjct: 106 DLSRNSLSGPVTTLTSLG-SCSGLKFLNVSSN--------TLDFPGKVSGGLK-LNSLEV 155

Query: 193 LEMAYHVISTEI--VLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVL 243
           L+++ + IS        +   C  L+ L + G    K+          NL+ L
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGN---KISGDVDVSRCVNLEFL 205

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 27/191 (14%), Positives = 53/191 (27%), Gaps = 39/191 (20%)

Query: 61  NRCQPDHL-----DRMVEMLITRSSGSLRKLCVSGLHNDM-MFSLIAENAGSLQTLRLPR 114
           N+   D +     DR     + R    +R         D         +   +Q +    
Sbjct: 11  NKVDHDRIRDVGPDRAASEWLLRCGAMVRYHGQQRWQKDYNHLPTGPLDKYKIQAIDATD 70

Query: 115 SEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKL 174
           S +       + G L  V  + L  C  I    LE + +   L                 
Sbjct: 71  SCIMSIGFDHMEG-LQYVEKIRLCKCHYIEDGCLERLSQLENL----------------- 112

Query: 175 SQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW---DVKLDDK 231
                          +  +E+      T+  +  L     L++L L       + +   +
Sbjct: 113 ------------QKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQ 160

Query: 232 FMKGNFPNLKV 242
             K + P+L++
Sbjct: 161 AFKTSLPSLEL 171

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 9  HWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEID 55
           WD L  + L  IF  L L E+L V  GVCK W R       WQ +D
Sbjct: 8  SWDSLPDELLLGIFSCLCLPELLKVS-GVCKRWYRLASDESLWQTLD 53

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 40.3 bits (93), Expect = 5e-04
 Identities = 22/152 (14%), Positives = 41/152 (26%), Gaps = 5/152 (3%)

Query: 9   HWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHL 68
           +  EL    L  +   L   E++     VC  W+  V G   W     +E          
Sbjct: 50  YLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPE-GSAD 108

Query: 69  DRMVEMLITRSSGSLRKLCVSGLHNDMMFSL--IAENAGSLQTLRLPRSEMSDSIVAQIA 126
           +              R+  +     +         E+ G    +     +         +
Sbjct: 109 EERDHWQQFYFLSKRRRNLLRNPCGEEDLEGWSDVEHGGDGWKVEELPGDNGVEFTQDDS 168

Query: 127 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL 158
            +    +     +C K     L+A G   +LL
Sbjct: 169 VKKYFAS--SFEWCRKAQVIDLQAEGYWEELL 198

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 22/157 (14%), Positives = 53/157 (33%), Gaps = 23/157 (14%)

Query: 82  SLRKLCVSGLH-NDMMFSLIAE----NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLD 136
           SLR+L ++G+    +  +++A        +L  + L   ++  + +  +         L 
Sbjct: 73  SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLG 132

Query: 137 LSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLS----QDDEANAIAS---TMPK 189
           L   S +G  A + +        +L  +   + T   LS           +         
Sbjct: 133 LQLNS-LGPEACKDLRD------LLLHDQCQITTLR-LSNNPLTAAGVAVLMEGLAGNTS 184

Query: 190 LKRLEMAYHVISTEIVLKI---LSSCALLEFLDLRGC 223
           +  L + +  +  E +  +   L     L+ L++   
Sbjct: 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN 221

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	322
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.96
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.89
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.6
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.59
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.58
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.55
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.5
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.39
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.37
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.36
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.34
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.31
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.25
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.22
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.18
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.09
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.0
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.99
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.93
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.91
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.88
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.87
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.86
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.83
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.71
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.71
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.7
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.69
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.68
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.68
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.65
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.61
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.58
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.58
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.57
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.56
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.56
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.54
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.54
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	98.54
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.54
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.53
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.51
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.51
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.49
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.49
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.48
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.48
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.47
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.47
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.47
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.45
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.45
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.44
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.44
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.43
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.41
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.4
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.4
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.39
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.39
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.37
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.35
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.34
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.34
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.33
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.33
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.3
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.3
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.3
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.29
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.27
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.26
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.26
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.24
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.22
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.2
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.2
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.19
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.18
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.1
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.1
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.1
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.08
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.08
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	98.07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.03
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.02
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.02
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.02
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.01
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	97.99
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.99
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.98
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.98
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.98
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	97.94
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.92
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.92
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.88
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.88
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.86
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.85
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.84
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.81
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.78
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.66
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.58
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.54
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.53
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.47
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.47
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.45
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.4
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.32
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.27
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.27
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.14
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.95
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	96.81
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.8
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.78
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.63
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.3
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	96.15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	94.88
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	94.66
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	93.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	90.38
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	85.88
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	84.78
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	83.34
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	82.03
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	80.15

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.96  E-value=2.3e-27  Score=215.39  Aligned_cols=230  Identities=24%  Similarity=0.271  Sum_probs=178.6

Q ss_pred             CCCCcccCCHHHHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCceeeeccccccccCChhHHHHHHHHHHH--------
Q 020754            6 EFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHLDRMVEMLIT--------   77 (322)
Q Consensus         6 ~~~~w~~LP~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw~~i~l~~~~~~~~~~~~~~~l~~l~~--------   77 (322)
                      +.+.|++||+|++.+||++|+..++++ +++|||+|+.++.+|.+|+.+++.....  .+..+..++...+.        
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~-~~~vc~~W~~~~~~~~~~~~l~l~~~~~--~~~~~~~~~~~~l~~L~l~~n~   81 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLK-VSGVCKRWYRLASDESLWQTLDLTGKNL--HPDVTGRLLSQGVIAFRCPRSF   81 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHH-TTSSCHHHHHHHTCSTTSSEEECTTCBC--CHHHHHHHHHTTCSEEECTTCE
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHH-HHHHHHHHHHHhcCchhheeeccccccC--CHHHHHhhhhccceEEEcCCcc
Confidence            468899999999999999999999998 7999999999999999999999987543  23333322111000        


Q ss_pred             --------hcCCCeeEEEecCCC-ChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHH
Q 020754           78 --------RSSGSLRKLCVSGLH-NDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPAL  148 (322)
Q Consensus        78 --------r~~~~l~~L~l~~~~-~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l  148 (322)
                              ....++++|+++++. ++..+..+...+++|++|+|.+|.+++.....+.. +++|++|++++|..+++.++
T Consensus        82 l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~~~L~~L~L~~~~~l~~~~l  160 (336)
T 2ast_B           82 MDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFAL  160 (336)
T ss_dssp             ECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHH
T ss_pred             ccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc-CCCCCEEECCCCCCCCHHHH
Confidence                    012567888887764 44557777788999999999999999887777654 89999999999778999888


Q ss_pred             HHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCC-CCCEEEecCc--ccCHHHHHHHHhcCCCCCEEeecCCCC
Q 020754          149 EAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMP-KLKRLEMAYH--VISTEIVLKILSSCALLEFLDLRGCWD  225 (322)
Q Consensus       149 ~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p-~L~~L~L~~~--~i~~~~l~~i~~~~~~L~~L~L~~c~~  225 (322)
                      ..+...|++|++|.++.+.      .+.+.++..+...+| +|++|+|++|  .+++.++..++..+++|++|++++|..
T Consensus       161 ~~~~~~~~~L~~L~l~~~~------~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~  234 (336)
T 2ast_B          161 QTLLSSCSRLDELNLSWCF------DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVM  234 (336)
T ss_dssp             HHHHHHCTTCCEEECCCCT------TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTT
T ss_pred             HHHHhcCCCCCEEcCCCCC------CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCc
Confidence            8888899999999765441      344455666667899 9999999999  688888888888999999999999976


Q ss_pred             cCCChHHHHhcCCCCeeeCC
Q 020754          226 VKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       226 ~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      ++.........+++|++|.+
T Consensus       235 l~~~~~~~l~~l~~L~~L~l  254 (336)
T 2ast_B          235 LKNDCFQEFFQLNYLQHLSL  254 (336)
T ss_dssp             CCGGGGGGGGGCTTCCEEEC
T ss_pred             CCHHHHHHHhCCCCCCEeeC
Confidence            64333333467788988864

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.89  E-value=7.9e-23  Score=199.06  Aligned_cols=220  Identities=20%  Similarity=0.290  Sum_probs=159.5

Q ss_pred             CCcccCCHHHHHHHHccCC-hHHHhhhhhhhhHHHHHHhcCCCceeeeccccccccCChhHHHHHHHHHHHhcCCCeeEE
Q 020754            8 RHWDELIPDALGLIFRNLS-LQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHLDRMVEMLITRSSGSLRKL   86 (322)
Q Consensus         8 ~~w~~LP~eiL~~IF~~L~-~~~~l~~~~~VCk~W~~~~~~~~lw~~i~l~~~~~~~~~~~~~~~l~~l~~r~~~~l~~L   86 (322)
                      ..|++||+|+|.+||+||+ .+++.+ +++|||+|+.+.  +..|+.+++...... .+.       .+..+ .+.+++|
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~-~s~vck~W~~~~--~~~~~~l~~~~~~~~-~~~-------~~~~~-~~~L~~L   71 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNS-VSLVCKSWYEIE--RWCRRKVFIGNCYAV-SPA-------TVIRR-FPKVRSV   71 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHH-HHTSCHHHHHHH--HHHCCEEEESSTTSS-CHH-------HHHHH-CTTCCEE
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHH-HHHHHHHHHHhh--hhhceEEeecccccc-CHH-------HHHhh-CCCceEE
Confidence            5799999999999999999 999888 799999999993  356777777654321 121       12223 4669999


Q ss_pred             EecCCCC---------------hHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHH
Q 020754           87 CVSGLHN---------------DMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAI  151 (322)
Q Consensus        87 ~l~~~~~---------------~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l  151 (322)
                      .++++..               ...+..+...+++|++|+|++|.+++..+..++..+++|++|++++|..++..++..+
T Consensus        72 ~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~  151 (594)
T 2p1m_B           72 ELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI  151 (594)
T ss_dssp             EEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHH
T ss_pred             eccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHH
Confidence            9987641               2346677788999999999999999999999988899999999999888999999999


Q ss_pred             HhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcc--cCHHHHHHHHhcCCCCCEEeecCCCCcCCC
Q 020754          152 GKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV--ISTEIVLKILSSCALLEFLDLRGCWDVKLD  229 (322)
Q Consensus       152 ~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~--i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~  229 (322)
                      +..|++|++|.+..+.+.-.+    ...+..+...+++|++|+|++|.  ++...+..++..|++|++|+|++|..++ .
T Consensus       152 ~~~~~~L~~L~L~~~~i~~~~----~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~  226 (594)
T 2p1m_B          152 AATCRNLKELDLRESDVDDVS----GHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-K  226 (594)
T ss_dssp             HHHCTTCCEEECTTCEEECCC----GGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-H
T ss_pred             HHhCCCCCEEeCcCCccCCcc----hHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-H
Confidence            999999999988766532211    12233444567888888888875  7777777777778888888888874442 1


Q ss_pred             hHHHHhcCCCCeeeC
Q 020754          230 DKFMKGNFPNLKVLG  244 (322)
Q Consensus       230 ~~~l~~~~~~Lk~L~  244 (322)
                      -..+...+++|++|.
T Consensus       227 l~~~~~~~~~L~~L~  241 (594)
T 2p1m_B          227 LATLLQRAPQLEELG  241 (594)
T ss_dssp             HHHHHHHCTTCSEEE
T ss_pred             HHHHHhcCCcceEcc
Confidence            123345556666653

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.86  E-value=4.1e-21  Score=186.99  Aligned_cols=226  Identities=16%  Similarity=0.196  Sum_probs=165.4

Q ss_pred             CCCCcCCCCcc----cCCHHHHHHHHccC-ChHHHhhhhhhhhHHHHHHhcCCCceeeeccccccccCChhHHHHHHHHH
Q 020754            1 MEGESEFRHWD----ELIPDALGLIFRNL-SLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEEWSNRCQPDHLDRMVEML   75 (322)
Q Consensus         1 ~~~~~~~~~w~----~LP~eiL~~IF~~L-~~~~~l~~~~~VCk~W~~~~~~~~lw~~i~l~~~~~~~~~~~~~~~l~~l   75 (322)
                      |++. +++++.    +||+|+|.+||+|| +.+++.+ ++.|||+|+.+..  ..++.+.+...... .       ...+
T Consensus         1 m~~~-~~~r~~~~~~~LPdeil~~I~~~L~~~~d~~~-~s~vck~W~~~~~--~~~~~l~~~~~~~~-~-------~~~~   68 (592)
T 3ogk_B            1 MEDP-DIKRCKLSCVATVDDVIEQVMTYITDPKDRDS-ASLVCRRWFKIDS--ETREHVTMALCYTA-T-------PDRL   68 (592)
T ss_dssp             ------------CCCCCGGGTHHHHHTTCCCHHHHHH-HTTSCHHHHHHHH--HHCCEEEESCGGGS-C-------HHHH
T ss_pred             CCCh-hhhhHhhccCCCCHHHHHHHHHhcCCHHHHHH-HHHHhHHHHHhhh--ccccEEEEeecccc-C-------hHHH
Confidence            4443 344444    89999999999999 8999888 7999999999954  22233333221110 1       1223


Q ss_pred             HHhcCCCeeEEEecCCCC---------------hHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCC-ccEEeccC
Q 020754           76 ITRSSGSLRKLCVSGLHN---------------DMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSA-VTFLDLSY  139 (322)
Q Consensus        76 ~~r~~~~l~~L~l~~~~~---------------~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~-L~~L~l~~  139 (322)
                      ..+ .+.+++|+++++..               ...+..++..+++|++|+|++|.+++..+..++..+++ |++|++++
T Consensus        69 ~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~  147 (592)
T 3ogk_B           69 SRR-FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDK  147 (592)
T ss_dssp             HHH-CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEES
T ss_pred             HHh-CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcC
Confidence            333 45599999977532               34677778899999999999999999999988887777 99999999


Q ss_pred             CCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccC---HHHHHHHHhcCCCCC
Q 020754          140 CSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIS---TEIVLKILSSCALLE  216 (322)
Q Consensus       140 c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~---~~~l~~i~~~~~~L~  216 (322)
                      |..++..++..++..||+|++|++..+.+.-.+    ...+..+...+|+|++|+|+++.++   ..++..++..|++|+
T Consensus       148 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~----~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~  223 (592)
T 3ogk_B          148 CSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD----GKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV  223 (592)
T ss_dssp             CEEEEHHHHHHHHHHCTTCSEEECTTCEEECCC----SHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred             CCCcCHHHHHHHHhhCCCCCEEECccccccCcc----hhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence            988889999999999999999988766542111    2335667778999999999998765   778888899999999


Q ss_pred             EEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          217 FLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       217 ~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      +|+|++|....  -......+++|++|..
T Consensus       224 ~L~L~~~~~~~--l~~~~~~~~~L~~L~l  250 (592)
T 3ogk_B          224 SVKVGDFEILE--LVGFFKAAANLEEFCG  250 (592)
T ss_dssp             EEECSSCBGGG--GHHHHHHCTTCCEEEE
T ss_pred             EEeccCccHHH--HHHHHhhhhHHHhhcc
Confidence            99999986442  2344567788887754

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.60  E-value=4.7e-14  Score=130.23  Aligned_cols=132  Identities=17%  Similarity=0.202  Sum_probs=68.7

Q ss_pred             CCCCEEecCCCCCCHHHHHHHH---hcCCCccEEeccCCCCCCHHHHHHHHh----cCCCcceeeccccccCCCCCCCCc
Q 020754          105 GSLQTLRLPRSEMSDSIVAQIA---GRLSAVTFLDLSYCSKIGAPALEAIGK----HCKLLVVLCRNMHPLDTADKLSQD  177 (322)
Q Consensus       105 ~~L~~L~L~~~~i~~~~l~~l~---~~~~~L~~L~l~~c~~i~~~~l~~l~~----~c~~L~~L~l~~~~l~~~~~~~~~  177 (322)
                      ++|++|.|++|.+++.++..++   ..+++|++|++++ +.+++.++.+++.    .+++|+.|.++.+       .+.+
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~-n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-------~l~~  230 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ-NGIRPEGIEHLLLEGLAYCQELKVLDLQDN-------TFTH  230 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCS-SCCCHHHHHHHHHTTGGGCTTCCEEECCSS-------CCHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcC-CCCCHhHHHHHHHHHhhcCCCccEEECcCC-------CCCc
Confidence            5555555555555544444322   2445555666555 3555555443333    4555555544333       2222


Q ss_pred             hHHHHH---HhcCCCCCEEEecCcccCHHHHHHHHhc-----CCCCCEEeecCCCCcCCCh-----HHHHhcCCCCeeeC
Q 020754          178 DEANAI---ASTMPKLKRLEMAYHVISTEIVLKILSS-----CALLEFLDLRGCWDVKLDD-----KFMKGNFPNLKVLG  244 (322)
Q Consensus       178 ~~~~~l---~~~~p~L~~L~L~~~~i~~~~l~~i~~~-----~~~L~~L~L~~c~~~~~~~-----~~l~~~~~~Lk~L~  244 (322)
                      .++..+   ...+|+|++|+|++|.+++.+...+...     +++|++|+|++|. ++..+     ..+...+++|++|.
T Consensus       231 ~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~  309 (386)
T 2ca6_A          231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLE  309 (386)
T ss_dssp             HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEE
Confidence            222222   2456777777777777777665544432     6777777777774 32111     12234567777774


Q ss_pred             C
Q 020754          245 P  245 (322)
Q Consensus       245 ~  245 (322)
                      +
T Consensus       310 l  310 (386)
T 2ca6_A          310 L  310 (386)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.59  E-value=1e-13  Score=127.99  Aligned_cols=157  Identities=14%  Similarity=0.087  Sum_probs=112.9

Q ss_pred             CCCeeEEEecCCC-Ch---HHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcC------------CCccEEeccCCCCC
Q 020754           80 SGSLRKLCVSGLH-ND---MMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRL------------SAVTFLDLSYCSKI  143 (322)
Q Consensus        80 ~~~l~~L~l~~~~-~~---~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~------------~~L~~L~l~~c~~i  143 (322)
                      ..+|++|++++.. +.   ..+......+++|++|+|++|.+++.+...++..+            ++|++|++++ +.+
T Consensus        93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~-n~l  171 (386)
T 2ca6_A           93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR-NRL  171 (386)
T ss_dssp             CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS-SCC
T ss_pred             CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC-CCC
Confidence            5779999998754 22   23444456799999999999998877665555433            8999999998 578


Q ss_pred             CHHHHHHHH---hcCCCcceeeccccccCCCCCCCCchHHHHHHh----cCCCCCEEEecCcccCHHHHHHH---HhcCC
Q 020754          144 GAPALEAIG---KHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS----TMPKLKRLEMAYHVISTEIVLKI---LSSCA  213 (322)
Q Consensus       144 ~~~~l~~l~---~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~----~~p~L~~L~L~~~~i~~~~l~~i---~~~~~  213 (322)
                      ++.++..++   ..+++|++|.++.+       .+.+.++..++.    .+++|++|+|++|.+++.++..+   +..++
T Consensus       172 ~~~~~~~l~~~l~~~~~L~~L~L~~n-------~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~  244 (386)
T 2ca6_A          172 ENGSMKEWAKTFQSHRLLHTVKMVQN-------GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP  244 (386)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSS-------CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred             CcHHHHHHHHHHHhCCCcCEEECcCC-------CCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence            877766544   37889999976544       344555544443    78999999999999987665555   45789


Q ss_pred             CCCEEeecCCCCcCCCh-HHH---H--hcCCCCeeeCC
Q 020754          214 LLEFLDLRGCWDVKLDD-KFM---K--GNFPNLKVLGP  245 (322)
Q Consensus       214 ~L~~L~L~~c~~~~~~~-~~l---~--~~~~~Lk~L~~  245 (322)
                      +|++|+|++|. ++..+ ..+   .  ..+++|++|.+
T Consensus       245 ~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L  281 (386)
T 2ca6_A          245 NLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRL  281 (386)
T ss_dssp             TCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEEC
T ss_pred             CcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEEC
Confidence            99999999996 43222 112   2  23899999975

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.58  E-value=1.8e-14  Score=139.95  Aligned_cols=163  Identities=20%  Similarity=0.256  Sum_probs=103.2

Q ss_pred             cCCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCC----------C-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHH
Q 020754           79 SSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPR----------S-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPA  147 (322)
Q Consensus        79 ~~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~----------~-~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~  147 (322)
                      .+++|+.|++++...+..+..++..|++|++|+|.+          | .+++.++..++..|++|++|+++ |+.+++.+
T Consensus       316 ~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~-~~~l~~~~  394 (592)
T 3ogk_B          316 KCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVY-VSDITNES  394 (592)
T ss_dssp             TCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEE-ESCCCHHH
T ss_pred             hCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEee-cCCccHHH
Confidence            355677777765555666666677777788888773          4 77777777777777778888774 57777777


Q ss_pred             HHHHHhcCCCcceeeccccc----c----------------------CCCCC--CCCchHHHHHHhcCCCCCEEEecCcc
Q 020754          148 LEAIGKHCKLLVVLCRNMHP----L----------------------DTADK--LSQDDEANAIASTMPKLKRLEMAYHV  199 (322)
Q Consensus       148 l~~l~~~c~~L~~L~l~~~~----l----------------------~~~~~--~~~~~~~~~l~~~~p~L~~L~L~~~~  199 (322)
                      +..+++.|++|+.|++..+.    +                      ++..|  .+.+..+..++..+|+|++|+|++|.
T Consensus       395 ~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~  474 (592)
T 3ogk_B          395 LESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG  474 (592)
T ss_dssp             HHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred             HHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence            77777777777777774211    1                      01001  13344455565566677777777777


Q ss_pred             cCHHHHHHHHhcCCCCCEEeecCCCCcCCCh-HHHHhcCCCCeee
Q 020754          200 ISTEIVLKILSSCALLEFLDLRGCWDVKLDD-KFMKGNFPNLKVL  243 (322)
Q Consensus       200 i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~-~~l~~~~~~Lk~L  243 (322)
                      +++.++..++.+|++|++|+|++|. ++..+ ..+...+++|++|
T Consensus       475 l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L  518 (592)
T 3ogk_B          475 ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYL  518 (592)
T ss_dssp             SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEE
T ss_pred             CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCee
Confidence            7766666666667777777777765 42111 2234456666666

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.55  E-value=5.7e-14  Score=126.88  Aligned_cols=160  Identities=20%  Similarity=0.323  Sum_probs=126.8

Q ss_pred             cCCCeeEEEecCCC-ChHHHHHHHHhCCCCCEEecCCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCC
Q 020754           79 SSGSLRKLCVSGLH-NDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCK  156 (322)
Q Consensus        79 ~~~~l~~L~l~~~~-~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~  156 (322)
                      ..++|++|+++++. ++.....++ .+++|++|+|.+| .+++.++..+...+++|++|++++|..+++.++..+...+|
T Consensus       116 ~~~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~  194 (336)
T 2ast_B          116 QCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS  194 (336)
T ss_dssp             TBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred             hCCCCCEEeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcc
Confidence            45789999999875 445555554 4999999999999 89999899988999999999999976899988888888899


Q ss_pred             -CcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcc-cCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHH
Q 020754          157 -LLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMK  234 (322)
Q Consensus       157 -~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~-i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~  234 (322)
                       +|++|.++.+..     .+.+..+..+...+|+|++|+|++|. +++..+..+ ..+++|++|++++|..++..+....
T Consensus       195 ~~L~~L~l~~~~~-----~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~~l  268 (336)
T 2ast_B          195 ETITQLNLSGYRK-----NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQLNYLQHLSLSRCYDIIPETLLEL  268 (336)
T ss_dssp             TTCCEEECCSCGG-----GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GGCTTCCEEECTTCTTCCGGGGGGG
T ss_pred             cCCCEEEeCCCcc-----cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hCCCCCCEeeCCCCCCCCHHHHHHH
Confidence             999998765432     23445666676789999999999998 777766644 5789999999999975642222234


Q ss_pred             hcCCCCeeeCC
Q 020754          235 GNFPNLKVLGP  245 (322)
Q Consensus       235 ~~~~~Lk~L~~  245 (322)
                      ..+++|++|.+
T Consensus       269 ~~~~~L~~L~l  279 (336)
T 2ast_B          269 GEIPTLKTLQV  279 (336)
T ss_dssp             GGCTTCCEEEC
T ss_pred             hcCCCCCEEec
Confidence            67899998854

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.50  E-value=2.4e-13  Score=131.97  Aligned_cols=141  Identities=15%  Similarity=0.168  Sum_probs=77.9

Q ss_pred             cCCCeeEEEecCCCChHHHHHHHHhCCCCCEEecC--------C-CCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHH
Q 020754           79 SSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLP--------R-SEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALE  149 (322)
Q Consensus        79 ~~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~--------~-~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~  149 (322)
                      .+++|++|+++++.++..+..++..+++|++|+|.        . +.+++.++..++..|++|++|.++ |+.+++.++.
T Consensus       312 ~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~  390 (594)
T 2p1m_B          312 QCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALI  390 (594)
T ss_dssp             TCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHH
T ss_pred             cCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHH
Confidence            34667777777665566666666667777777772        2 267777777776666777777544 4667777776


Q ss_pred             HHHhcCCCcceeeccccccCCCCC-CCC----chHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCC
Q 020754          150 AIGKHCKLLVVLCRNMHPLDTADK-LSQ----DDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC  223 (322)
Q Consensus       150 ~l~~~c~~L~~L~l~~~~l~~~~~-~~~----~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c  223 (322)
                      .+++.||+|+.|++.....  .+| .+.    +.++.++...|++|++|+|++ .+++.++..+...+++|+.|+|++|
T Consensus       391 ~l~~~~~~L~~L~L~~~~~--~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~  466 (594)
T 2p1m_B          391 TIARNRPNMTRFRLCIIEP--KAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFA  466 (594)
T ss_dssp             HHHHHCTTCCEEEEEESST--TCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HHHhhCCCcceeEeecccC--CCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCC
Confidence            6666667777776651100  000 011    223334444444444444444 4444444444444444444444444

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.39  E-value=3.5e-13  Score=109.94  Aligned_cols=106  Identities=17%  Similarity=0.223  Sum_probs=76.8

Q ss_pred             CCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHh
Q 020754          106 SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS  185 (322)
Q Consensus       106 ~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~  185 (322)
                      +|++|+|++|.|++.++..+ ..|++|++|+|++|..+++.++..+++.                             ..
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~-----------------------------~~  111 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQL-----------------------------EN  111 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTC-----------------------------HH
T ss_pred             eEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhc-----------------------------cc
Confidence            57777777777777777766 4677777777777777777776666531                             00


Q ss_pred             cCCCCCEEEecCcc-cCHHHHHHHHhcCCCCCEEeecCCCCcCCCh---HHHHhcCCCCee
Q 020754          186 TMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDD---KFMKGNFPNLKV  242 (322)
Q Consensus       186 ~~p~L~~L~L~~~~-i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~---~~l~~~~~~Lk~  242 (322)
                      .+++|++|+|++|. ||+.++..+. .|++|++|+|++|..++..+   ..+.+..|++++
T Consensus       112 ~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V  171 (176)
T 3e4g_A          112 LQKSMLEMEIISCGNVTDKGIIALH-HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL  171 (176)
T ss_dssp             HHHHCCEEEEESCTTCCHHHHHHGG-GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred             ccCCCCEEEcCCCCcCCHHHHHHHh-cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence            24678888888885 8999888775 68999999999998887433   345677888775

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.37  E-value=3.2e-13  Score=88.09  Aligned_cols=50  Identities=38%  Similarity=0.633  Sum_probs=40.1

Q ss_pred             cCCCCcccCCHHHHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCceeeec
Q 020754            5 SEFRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEID   55 (322)
Q Consensus         5 ~~~~~w~~LP~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw~~i~   55 (322)
                      .+...|..||+|++.+||++|+..++.+ +++|||+|+.++.++.+|+.+|
T Consensus         4 ~~~~~~~~LP~eil~~I~~~L~~~dl~~-~~~Vck~w~~~~~~~~lW~~ld   53 (53)
T 1fs1_A            4 FPGVSWDSLPDELLLGIFSCLCLPELLK-VSGVCKRWYRLASDESLWQTLD   53 (53)
T ss_dssp             -----CCSSCHHHHHHHHTTSCGGGHHH-HHTTCHHHHHHHTCGGGC----
T ss_pred             CCCCCHHHCCHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhCChHHHHhcC
Confidence            3467899999999999999999999998 7999999999999999999875

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.36  E-value=4.8e-13  Score=109.14  Aligned_cols=103  Identities=15%  Similarity=0.263  Sum_probs=80.1

Q ss_pred             CCeeEEEecCCC-ChHHHHHHHHhCCCCCEEecCCC-CCCHHHHHHHHhc---CCCccEEeccCCCCCCHHHHHHHHhcC
Q 020754           81 GSLRKLCVSGLH-NDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGR---LSAVTFLDLSYCSKIGAPALEAIGKHC  155 (322)
Q Consensus        81 ~~l~~L~l~~~~-~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~---~~~L~~L~l~~c~~i~~~~l~~l~~~c  155 (322)
                      -.|++|++++|. ++..+..+ ..|++|++|+|++| .|||.++..++..   +++|++|+|++|..+|+.++.+++ .|
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~  138 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF  138 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred             ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence            469999999876 67777776 57999999999999 8999999999873   679999999999999999998886 46


Q ss_pred             CCcceeeccccccCCCCCCCCchH--HHHHHhcCCCCC
Q 020754          156 KLLVVLCRNMHPLDTADKLSQDDE--ANAIASTMPKLK  191 (322)
Q Consensus       156 ~~L~~L~l~~~~l~~~~~~~~~~~--~~~l~~~~p~L~  191 (322)
                      ++|++|.+..++.      +++.+  ...+.+.+|+++
T Consensus       139 ~~L~~L~L~~c~~------Itd~gl~~~~L~~~lP~l~  170 (176)
T 3e4g_A          139 RNLKYLFLSDLPG------VKEKEKIVQAFKTSLPSLE  170 (176)
T ss_dssp             TTCCEEEEESCTT------CCCHHHHHHHHHHHCTTCE
T ss_pred             CCCCEEECCCCCC------CCchHHHHHHHHHHCCCcE
Confidence            7777776554332      33433  344555666654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.34  E-value=2.1e-11  Score=112.01  Aligned_cols=165  Identities=13%  Similarity=0.127  Sum_probs=113.7

Q ss_pred             eeeeccccccccCChhHHHHHHHHHHHhcCCCeeEEEecCCC-ChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHh--
Q 020754           51 WQEIDIEEWSNRCQPDHLDRMVEMLITRSSGSLRKLCVSGLH-NDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAG--  127 (322)
Q Consensus        51 w~~i~l~~~~~~~~~~~~~~~l~~l~~r~~~~l~~L~l~~~~-~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~--  127 (322)
                      -+.+++.....  ...... .+...+...+..++.|+|+++. ++..+..++..+++|+.|+|++|.+++.++..++.  
T Consensus        74 L~~L~Ls~n~l--~~~~~~-~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           74 LRQLNLAGVRM--TPVKCT-VVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             CCEEECTTSCC--CHHHHH-HHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             CCEEEecCCCC--CHHHHH-HHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            34566655432  222222 2333334445678999998765 56667777777778999999999888888777654  


Q ss_pred             --cCCCccEEeccCCCCCCHHHHHHHH---hcCCCcceeeccccccCCCCCCCCchHHHHHH---hcCCCCCEEEecCcc
Q 020754          128 --RLSAVTFLDLSYCSKIGAPALEAIG---KHCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHV  199 (322)
Q Consensus       128 --~~~~L~~L~l~~c~~i~~~~l~~l~---~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~---~~~p~L~~L~L~~~~  199 (322)
                        ..++|++|+|++ +.+++.++..++   +.+++|++|+++.+       .+.+.++..++   ..+++|++|+|++|.
T Consensus       151 ~~~~~~L~~L~Ls~-n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N-------~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          151 LHDQCQITTLRLSN-NPLTAAGVAVLMEGLAGNTSVTHLSLLHT-------GLGDEGLELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             HSTTCCCCEEECCS-SCCHHHHHHHHHHHHHTCSSCCEEECTTS-------SCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred             HhcCCccceeeCCC-CCCChHHHHHHHHHHhcCCCcCEEeCCCC-------CCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence              357899999998 478887776665   45788888866544       34445554443   356789999999999


Q ss_pred             cCHHHHHHHHh---cCCCCCEEeecCCCCcC
Q 020754          200 ISTEIVLKILS---SCALLEFLDLRGCWDVK  227 (322)
Q Consensus       200 i~~~~l~~i~~---~~~~L~~L~L~~c~~~~  227 (322)
                      |++.++..++.   .+++|++|+|++|. ++
T Consensus       223 i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~  252 (372)
T 3un9_A          223 AGDTAALALARAAREHPSLELLHLYFNE-LS  252 (372)
T ss_dssp             CCHHHHHHHHHHHHHCSSCCEEECTTSS-CC
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEeccCCC-CC
Confidence            98887766654   56889999999885 53

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.31  E-value=1.7e-11  Score=112.60  Aligned_cols=157  Identities=13%  Similarity=0.149  Sum_probs=119.9

Q ss_pred             CCCeeEEEecCCC-ChHHHHHHHH----hCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHh-
Q 020754           80 SGSLRKLCVSGLH-NDMMFSLIAE----NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGK-  153 (322)
Q Consensus        80 ~~~l~~L~l~~~~-~~~~l~~l~~----~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~-  153 (322)
                      ...++.|+++++. +......++.    .+++|++|+|++|.+++.++..++..+++|++|+|++ +.+++.++..++. 
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~-n~l~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQL-NSLGPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCS-SCCCHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCC-CCCCHHHHHHHHHH
Confidence            4569999998865 4433333333    2469999999999999999999998889999999999 5899988887764 


Q ss_pred             ---cCCCcceeeccccccCCCCCCCCchHHHHHH---hcCCCCCEEEecCcccCHHHHHHHH---hcCCCCCEEeecCCC
Q 020754          154 ---HCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEIVLKIL---SSCALLEFLDLRGCW  224 (322)
Q Consensus       154 ---~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~---~~~p~L~~L~L~~~~i~~~~l~~i~---~~~~~L~~L~L~~c~  224 (322)
                         .+++|+.|.++.+.       +.+.++..++   ..+++|++|+|++|.|++.++..+.   ..+++|+.|+|++|.
T Consensus       150 L~~~~~~L~~L~Ls~n~-------l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~  222 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNP-------LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG  222 (372)
T ss_dssp             HHSTTCCCCEEECCSSC-------CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred             HHhcCCccceeeCCCCC-------CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence               46889999776554       4445555443   4689999999999999998877665   456899999999995


Q ss_pred             CcCCCh-HHH---HhcCCCCeeeCC
Q 020754          225 DVKLDD-KFM---KGNFPNLKVLGP  245 (322)
Q Consensus       225 ~~~~~~-~~l---~~~~~~Lk~L~~  245 (322)
                       ++..+ ..+   ...++.|++|.+
T Consensus       223 -i~~~g~~~l~~~L~~~~~L~~L~L  246 (372)
T 3un9_A          223 -AGDTAALALARAAREHPSLELLHL  246 (372)
T ss_dssp             -CCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             -CCHHHHHHHHHHHHhCCCCCEEec
Confidence             54232 222   456789999965

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.25  E-value=1.1e-10  Score=109.85  Aligned_cols=157  Identities=15%  Similarity=0.122  Sum_probs=111.5

Q ss_pred             CCCeeEEEecCCC-ChH---HHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCC----CccEEeccCCCCCCHHHHHH-
Q 020754           80 SGSLRKLCVSGLH-NDM---MFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLS----AVTFLDLSYCSKIGAPALEA-  150 (322)
Q Consensus        80 ~~~l~~L~l~~~~-~~~---~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~----~L~~L~l~~c~~i~~~~l~~-  150 (322)
                      .++++.|+++++. ++.   .+......+++|++|+|++|.+++.++..++..++    +|++|++++| .+++.++.. 
T Consensus        27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l  105 (461)
T 1z7x_W           27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVL  105 (461)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHHHH
T ss_pred             cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHHHH
Confidence            4569999998875 333   34444566899999999999999988888888877    7999999984 788765443 


Q ss_pred             --HHhcCCCcceeeccccccCCCCCCCCchHHHHHHh----cCCCCCEEEecCcccCHHHH---HHHHhcCCCCCEEeec
Q 020754          151 --IGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS----TMPKLKRLEMAYHVISTEIV---LKILSSCALLEFLDLR  221 (322)
Q Consensus       151 --l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~----~~p~L~~L~L~~~~i~~~~l---~~i~~~~~~L~~L~L~  221 (322)
                        ....+++|++|.++.+.       +.+.++..++.    ..++|++|+|++|.+++.++   ...+..+++|++|+++
T Consensus       106 ~~~l~~~~~L~~L~Ls~n~-------i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~  178 (461)
T 1z7x_W          106 SSTLRTLPTLQELHLSDNL-------LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS  178 (461)
T ss_dssp             HHHTTSCTTCCEEECCSSB-------CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECC
T ss_pred             HHHHccCCceeEEECCCCc-------CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECc
Confidence              34567889999765443       33445554443    35689999999998887654   3445578999999999


Q ss_pred             CCCCcCCCh-HHH----HhcCCCCeeeCC
Q 020754          222 GCWDVKLDD-KFM----KGNFPNLKVLGP  245 (322)
Q Consensus       222 ~c~~~~~~~-~~l----~~~~~~Lk~L~~  245 (322)
                      +|. ++..+ ..+    ....++|++|.+
T Consensus       179 ~n~-i~~~~~~~l~~~l~~~~~~L~~L~L  206 (461)
T 1z7x_W          179 NND-INEAGVRVLCQGLKDSPCQLEALKL  206 (461)
T ss_dssp             SSB-CHHHHHHHHHHHHHHSCCCCCEEEC
T ss_pred             CCC-cchHHHHHHHHHHhcCCCCceEEEc
Confidence            986 43222 222    224668998865

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.22  E-value=4.2e-10  Score=105.74  Aligned_cols=157  Identities=19%  Similarity=0.194  Sum_probs=108.1

Q ss_pred             CCCeeEEEecCCC-ChHHHHHHHHhCC----CCCEEecCCCCCCHHH---HHHHHhcCCCccEEeccCCCCCCHHHHHHH
Q 020754           80 SGSLRKLCVSGLH-NDMMFSLIAENAG----SLQTLRLPRSEMSDSI---VAQIAGRLSAVTFLDLSYCSKIGAPALEAI  151 (322)
Q Consensus        80 ~~~l~~L~l~~~~-~~~~l~~l~~~~~----~L~~L~L~~~~i~~~~---l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l  151 (322)
                      .+.+++|++++.. ++..+..++..++    +|++|+|++|.+++.+   +......+++|++|++++ +.+++.++..+
T Consensus        55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l  133 (461)
T 1z7x_W           55 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD-NLLGDAGLQLL  133 (461)
T ss_dssp             CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCS-SBCHHHHHHHH
T ss_pred             CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCC-CcCchHHHHHH
Confidence            5679999998865 4556667777666    7999999999999754   344446789999999999 57888888777


Q ss_pred             Hhc----CCCcceeeccccccCCCCCCCCchHHHHH---HhcCCCCCEEEecCcccCHHHHHHHHh----cCCCCCEEee
Q 020754          152 GKH----CKLLVVLCRNMHPLDTADKLSQDDEANAI---ASTMPKLKRLEMAYHVISTEIVLKILS----SCALLEFLDL  220 (322)
Q Consensus       152 ~~~----c~~L~~L~l~~~~l~~~~~~~~~~~~~~l---~~~~p~L~~L~L~~~~i~~~~l~~i~~----~~~~L~~L~L  220 (322)
                      +..    .++|++|.++.+.+       ...++..+   ...+++|++|+|++|.+++.++..+..    ..++|++|++
T Consensus       134 ~~~l~~~~~~L~~L~L~~n~l-------~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L  206 (461)
T 1z7x_W          134 CEGLLDPQCRLEKLQLEYCSL-------SAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL  206 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSCC-------BGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEEC
T ss_pred             HHHHhcCCCcceEEECCCCCC-------CHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEc
Confidence            664    45799997765533       33332222   235778888888888777776666654    2457788888


Q ss_pred             cCCCCcCCCh----HHHHhcCCCCeeeCC
Q 020754          221 RGCWDVKLDD----KFMKGNFPNLKVLGP  245 (322)
Q Consensus       221 ~~c~~~~~~~----~~l~~~~~~Lk~L~~  245 (322)
                      ++|. ++..+    ......+++|++|.+
T Consensus       207 ~~n~-l~~~~~~~l~~~l~~~~~L~~L~L  234 (461)
T 1z7x_W          207 ESCG-VTSDNCRDLCGIVASKASLRELAL  234 (461)
T ss_dssp             TTSC-CBTTHHHHHHHHHHHCTTCCEEEC
T ss_pred             cCCC-CcHHHHHHHHHHHHhCCCccEEec
Confidence            7774 33222    122346677777754

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.18  E-value=6.8e-10  Score=91.77  Aligned_cols=123  Identities=12%  Similarity=0.106  Sum_probs=94.8

Q ss_pred             hHHHHHHHHhCCCCCEEecCCC-CCCHHHHHHHHhc---CCCccEEeccCCCCCCHHHHHHHHhc---CCCcceeecccc
Q 020754           94 DMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGR---LSAVTFLDLSYCSKIGAPALEAIGKH---CKLLVVLCRNMH  166 (322)
Q Consensus        94 ~~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~---~~~L~~L~l~~c~~i~~~~l~~l~~~---c~~L~~L~l~~~  166 (322)
                      ...+..+...+++|++|+|++| .+++.++..++..   .++|++|+|++ +.+++.+..+++..   .++|++|.++  
T Consensus        25 ~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~-n~i~~~g~~~l~~~L~~n~~L~~L~L~--  101 (185)
T 1io0_A           25 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVG-TRSNDPVAFALAEMLKVNNTLKSLNVE--  101 (185)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTT-SCCCHHHHHHHHHHHHHCSSCCEEECC--
T ss_pred             HHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcC-CCCChHHHHHHHHHHHhCCCcCEEECc--
Confidence            4456666777899999999998 9999888776654   57899999998 58898887766553   4778888654  


Q ss_pred             ccCCCCCCCCchHHHHHHh---cCCCCCEEEe--cCcccCHHHHHHHHh---cCCCCCEEeecCCC
Q 020754          167 PLDTADKLSQDDEANAIAS---TMPKLKRLEM--AYHVISTEIVLKILS---SCALLEFLDLRGCW  224 (322)
Q Consensus       167 ~l~~~~~~~~~~~~~~l~~---~~p~L~~L~L--~~~~i~~~~l~~i~~---~~~~L~~L~L~~c~  224 (322)
                           ++.+.+.++.+++.   ..++|++|+|  ++|.|++.+...++.   ..+.|++|+|++|.
T Consensus       102 -----~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          102 -----SNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             -----SSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             -----CCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence                 44455677766654   4678999999  889999988666654   56899999999885

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.09  E-value=5e-10  Score=102.32  Aligned_cols=139  Identities=12%  Similarity=0.110  Sum_probs=61.5

Q ss_pred             CCeeEEEecCCC-C---hHHHHHHHHhC-CCCCEEecCCCCCCHHHHHHHHh---c-CCCccEEeccCCCCCCHHHHHHH
Q 020754           81 GSLRKLCVSGLH-N---DMMFSLIAENA-GSLQTLRLPRSEMSDSIVAQIAG---R-LSAVTFLDLSYCSKIGAPALEAI  151 (322)
Q Consensus        81 ~~l~~L~l~~~~-~---~~~l~~l~~~~-~~L~~L~L~~~~i~~~~l~~l~~---~-~~~L~~L~l~~c~~i~~~~l~~l  151 (322)
                      ..|+.|+++++. +   ...+......+ ++|+.|+|++|.+++.+...++.   . +++|++|++++ +.+++.+...+
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l  158 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG-NDLGIKSSDEL  158 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT-SCGGGSCHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC-CcCCHHHHHHH
Confidence            456666665543 1   12222222333 56666666666544433333322   2 24666666665 35554333332


Q ss_pred             Hh---cCC-CcceeeccccccCCCCCCCCchHHHHHHhcC-CCCCEEEecCcccCHHHHHHHHh---c-CCCCCEEeecC
Q 020754          152 GK---HCK-LLVVLCRNMHPLDTADKLSQDDEANAIASTM-PKLKRLEMAYHVISTEIVLKILS---S-CALLEFLDLRG  222 (322)
Q Consensus       152 ~~---~c~-~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~-p~L~~L~L~~~~i~~~~l~~i~~---~-~~~L~~L~L~~  222 (322)
                      +.   .++ +|++|.++.+.+.-.+    ...+......+ ++|++|+|++|.+++.++..+..   . +++|++|+|++
T Consensus       159 ~~~l~~~~~~L~~L~Ls~n~l~~~~----~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~  234 (362)
T 3goz_A          159 IQILAAIPANVNSLNLRGNNLASKN----CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL  234 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSC----HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             HHHHhcCCccccEeeecCCCCchhh----HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcC
Confidence            22   222 5666655444331111    11111122234 36666666666655533332222   2 34666666666


Q ss_pred             CC
Q 020754          223 CW  224 (322)
Q Consensus       223 c~  224 (322)
                      |.
T Consensus       235 N~  236 (362)
T 3goz_A          235 NC  236 (362)
T ss_dssp             SC
T ss_pred             CC
Confidence            63

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.06  E-value=5.9e-11  Score=94.30  Aligned_cols=130  Identities=18%  Similarity=0.205  Sum_probs=81.1

Q ss_pred             CCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH
Q 020754          104 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  183 (322)
Q Consensus       104 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l  183 (322)
                      .++|+.|++++|.+++..+......+++|+.|++++| .++..   .....+++|+.|.++.+.+.       .. ....
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~i~-------~~-~~~~   83 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNRVS-------GG-LEVL   83 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSCCC-------SC-THHH
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCccc-------ch-HHHH
Confidence            3567777777776653333334455677777777774 55443   22345677777766555431       11 2233


Q ss_pred             HhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCCh--HHHHhcCCCCeeeCC
Q 020754          184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLGP  245 (322)
Q Consensus       184 ~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~--~~l~~~~~~Lk~L~~  245 (322)
                      ...+++|++|++++|.++.......+..+++|++|++++|.......  ......+++|++|..
T Consensus        84 ~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           84 AEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             HHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             hhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            34688888888888888775444556678888888888885443222  135677888888843

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.00  E-value=6.7e-09  Score=94.78  Aligned_cols=187  Identities=14%  Similarity=0.140  Sum_probs=113.6

Q ss_pred             CCceeeeccccccccCChhHHHHHHHHHHHhcCCCeeEEEecCCC-C---hHHHHHHHHh-CCCCCEEecCCCCCCHHH-
Q 020754           48 PYCWQEIDIEEWSNRCQPDHLDRMVEMLITRSSGSLRKLCVSGLH-N---DMMFSLIAEN-AGSLQTLRLPRSEMSDSI-  121 (322)
Q Consensus        48 ~~lw~~i~l~~~~~~~~~~~~~~~l~~l~~r~~~~l~~L~l~~~~-~---~~~l~~l~~~-~~~L~~L~L~~~~i~~~~-  121 (322)
                      +..-+.+++....-.  ......+... +......+++|+++++. +   ...+..+... +++|++|+|++|.+++.+ 
T Consensus        21 ~~~L~~L~Ls~n~l~--~~~~~~l~~~-l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~   97 (362)
T 3goz_A           21 PHGVTSLDLSLNNLY--SISTVELIQA-FANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSS   97 (362)
T ss_dssp             CTTCCEEECTTSCGG--GSCHHHHHHH-HHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred             CCCceEEEccCCCCC--hHHHHHHHHH-HHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHH
Confidence            443566777654321  1111122222 22223379999998765 2   2333333333 489999999999766543 


Q ss_pred             --HHHHHhcC-CCccEEeccCCCCCCHHHHHHHHhc----CCCcceeeccccccCCCCCCCCchHHHHH---HhcCC-CC
Q 020754          122 --VAQIAGRL-SAVTFLDLSYCSKIGAPALEAIGKH----CKLLVVLCRNMHPLDTADKLSQDDEANAI---ASTMP-KL  190 (322)
Q Consensus       122 --l~~l~~~~-~~L~~L~l~~c~~i~~~~l~~l~~~----c~~L~~L~l~~~~l~~~~~~~~~~~~~~l---~~~~p-~L  190 (322)
                        +......+ ++|++|++++ +.++..+...++..    +++|++|.++.+.+.       +.++..+   ...++ +|
T Consensus        98 ~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-------~~~~~~l~~~l~~~~~~L  169 (362)
T 3goz_A           98 DELVKTLAAIPFTITVLDLGW-NDFSSKSSSEFKQAFSNLPASITSLNLRGNDLG-------IKSSDELIQILAAIPANV  169 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECCS-SCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGG-------GSCHHHHHHHHHTSCTTC
T ss_pred             HHHHHHHHhCCCCccEEECcC-CcCCcHHHHHHHHHHHhCCCceeEEEccCCcCC-------HHHHHHHHHHHhcCCccc
Confidence              44444445 8999999998 56777666655443    579999987665443       2233222   23455 99


Q ss_pred             CEEEecCcccCHHHH---HHHHhcC-CCCCEEeecCCCCcCCChH----HHHhcCCCCeeeCC
Q 020754          191 KRLEMAYHVISTEIV---LKILSSC-ALLEFLDLRGCWDVKLDDK----FMKGNFPNLKVLGP  245 (322)
Q Consensus       191 ~~L~L~~~~i~~~~l---~~i~~~~-~~L~~L~L~~c~~~~~~~~----~l~~~~~~Lk~L~~  245 (322)
                      ++|+|++|.+++.+.   ...+..+ ++|++|+|++|........    .+....++|++|.+
T Consensus       170 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~L  232 (362)
T 3goz_A          170 NSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNL  232 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEEC
T ss_pred             cEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEEC
Confidence            999999998765444   4444566 4999999999963321222    22333568999865

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.99  E-value=1.3e-10  Score=92.30  Aligned_cols=138  Identities=15%  Similarity=0.186  Sum_probs=96.7

Q ss_pred             HHHHHhcCCCeeEEEecCCCCh-HHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHH
Q 020754           73 EMLITRSSGSLRKLCVSGLHND-MMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAI  151 (322)
Q Consensus        73 ~~l~~r~~~~l~~L~l~~~~~~-~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l  151 (322)
                      ........+.++.|+++++.-. ..+......+++|+.|++++|.++..   .....+++|++|++++ +.++.. +...
T Consensus         9 ~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~-n~i~~~-~~~~   83 (149)
T 2je0_A            9 LELRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSD-NRVSGG-LEVL   83 (149)
T ss_dssp             HHHTTCCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCS-SCCCSC-THHH
T ss_pred             HHHhcCCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCC-Ccccch-HHHH
Confidence            3344445567999999876432 22233345689999999999977654   3445689999999999 566653 4455


Q ss_pred             HhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHH--HHHHhcCCCCCEEeecC
Q 020754          152 GKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV--LKILSSCALLEFLDLRG  222 (322)
Q Consensus       152 ~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l--~~i~~~~~~L~~L~L~~  222 (322)
                      ...+++|+.|.++.+.+       ..-........+|+|++|++++|.++....  ...+..+++|+.|++++
T Consensus        84 ~~~l~~L~~L~ls~N~i-------~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           84 AEKCPNLTHLNLSGNKI-------KDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             HHHCTTCCEEECTTSCC-------CSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             hhhCCCCCEEECCCCcC-------CChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            56689999998765543       232222334589999999999998765432  24677899999999863

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.93  E-value=1.3e-10  Score=94.31  Aligned_cols=130  Identities=18%  Similarity=0.214  Sum_probs=75.4

Q ss_pred             CCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH
Q 020754          104 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  183 (322)
Q Consensus       104 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l  183 (322)
                      .++|+.|++++|.+++..+......+++|++|++++| .++..   .....+++|+.|.++.+.+.-       . ...+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~N~l~~-------~-~~~~   90 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV---SNLPKLPKLKKLELSENRIFG-------G-LDML   90 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC---SSCCCCSSCCEEEEESCCCCS-------C-CCHH
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh---hhhccCCCCCEEECcCCcCch-------H-HHHH
Confidence            3567777777776653333333445677777777774 45433   223346777777666554321       0 1223


Q ss_pred             HhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCCh--HHHHhcCCCCeeeCC
Q 020754          184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLGP  245 (322)
Q Consensus       184 ~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~--~~l~~~~~~Lk~L~~  245 (322)
                      ...+++|++|+|++|.++.......+..+++|++|++++|.......  ......+++|++|..
T Consensus        91 ~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  154 (168)
T 2ell_A           91 AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDG  154 (168)
T ss_dssp             HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETT
T ss_pred             HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecC
Confidence            33577888888888877653222334567888888888875443222  134567777777743

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.91  E-value=2.3e-08  Score=82.44  Aligned_cols=127  Identities=9%  Similarity=0.121  Sum_probs=94.8

Q ss_pred             HHHHHHHhcCCCeeEEEecCC-C-ChHHHHHHH---HhCCCCCEEecCCCCCCHHHHHHHHhc---CCCccEEeccCCCC
Q 020754           71 MVEMLITRSSGSLRKLCVSGL-H-NDMMFSLIA---ENAGSLQTLRLPRSEMSDSIVAQIAGR---LSAVTFLDLSYCSK  142 (322)
Q Consensus        71 ~l~~l~~r~~~~l~~L~l~~~-~-~~~~l~~l~---~~~~~L~~L~L~~~~i~~~~l~~l~~~---~~~L~~L~l~~c~~  142 (322)
                      .+..++.. ...+++|+|+++ . ++.....++   ..+++|++|+|++|.+++.+...++..   .++|++|+|++ +.
T Consensus        27 ~l~~~l~~-~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~-N~  104 (185)
T 1io0_A           27 TLKRIQNN-DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES-NF  104 (185)
T ss_dssp             HHHHHHTT-CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS-SC
T ss_pred             HHHHHHhc-CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcC-Cc
Confidence            34444433 567999999886 4 555444443   457899999999999999988776654   48999999998 69


Q ss_pred             CCHHHHHHHHhc---CCCcceeeccccccCCCCCCCCchHHHHHH---hcCCCCCEEEecCcccCHHH
Q 020754          143 IGAPALEAIGKH---CKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEI  204 (322)
Q Consensus       143 i~~~~l~~l~~~---c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~---~~~p~L~~L~L~~~~i~~~~  204 (322)
                      +++.++.+++..   ++.|++|.++.     .++.+.+.++.+++   +..++|++|+|++|.+++.+
T Consensus       105 i~~~g~~~l~~~L~~n~~L~~L~L~~-----~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~  167 (185)
T 1io0_A          105 ISGSGILALVEALQSNTSLIELRIDN-----QSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL  167 (185)
T ss_dssp             CCHHHHHHHHHGGGGCSSCCEEECCC-----CSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCceEEEecC-----CCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence            999998888765   46799997721     33445566665554   35789999999999998876

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.88  E-value=1.4e-09  Score=99.33  Aligned_cols=157  Identities=14%  Similarity=0.119  Sum_probs=102.6

Q ss_pred             CCeeEEEecCCCC---------hHHHHHHHHhCCCCCEEecCCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHH
Q 020754           81 GSLRKLCVSGLHN---------DMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEA  150 (322)
Q Consensus        81 ~~l~~L~l~~~~~---------~~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~  150 (322)
                      ++|+.|.+.....         ...+..+...+|+|++|.|.++ .+.-   ..+  ..++|++|+|.. ..++..++..
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l---~~~--~~~~L~~L~L~~-~~l~~~~l~~  212 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI---GKK--PRPNLKSLEIIS-GGLPDSVVED  212 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC---CSC--BCTTCSEEEEEC-SBCCHHHHHH
T ss_pred             chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee---ccc--cCCCCcEEEEec-CCCChHHHHH
Confidence            4699998865321         1135566778999999999887 3321   111  368999999997 4788999888


Q ss_pred             HHh-cCCCcceeeccccccCCCCCCCCchHHHH-HH-hcCCCCCEEEecCcccCHHHHHHHHh--cCCCCCEEeecCCCC
Q 020754          151 IGK-HCKLLVVLCRNMHPLDTADKLSQDDEANA-IA-STMPKLKRLEMAYHVISTEIVLKILS--SCALLEFLDLRGCWD  225 (322)
Q Consensus       151 l~~-~c~~L~~L~l~~~~l~~~~~~~~~~~~~~-l~-~~~p~L~~L~L~~~~i~~~~l~~i~~--~~~~L~~L~L~~c~~  225 (322)
                      ++. .+|+|++|.|........+... -..+.. +. ..+|+|++|+|.+|.+++.+...++.  .+|+|++|+|+.|. 
T Consensus       213 l~~~~lp~L~~L~L~~~~~~~~~~~~-~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-  290 (362)
T 2ra8_A          213 ILGSDLPNLEKLVLYVGVEDYGFDGD-MNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-  290 (362)
T ss_dssp             HHHSBCTTCCEEEEECBCGGGTCCSC-GGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-
T ss_pred             HHHccCCCCcEEEEeccccccccchh-HHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-
Confidence            875 6899999988542211112110 011111 11 35899999999999998877776765  56899999998774 


Q ss_pred             cCCCh-HHHH---hcCCCCeeeCC
Q 020754          226 VKLDD-KFMK---GNFPNLKVLGP  245 (322)
Q Consensus       226 ~~~~~-~~l~---~~~~~Lk~L~~  245 (322)
                      ++..+ ..+.   ..+++|+.|.+
T Consensus       291 L~d~G~~~L~~~L~~l~~L~~L~L  314 (362)
T 2ra8_A          291 LTDEGARLLLDHVDKIKHLKFINM  314 (362)
T ss_dssp             CBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred             CChHHHHHHHhhcccCCcceEEEC
Confidence            53222 2232   45677777744

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.87  E-value=9.6e-10  Score=91.60  Aligned_cols=143  Identities=17%  Similarity=0.198  Sum_probs=86.7

Q ss_pred             CeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCccee
Q 020754           82 SLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL  161 (322)
Q Consensus        82 ~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L  161 (322)
                      .++.|++++..-.. +.. ...+++|+.|.+++|.++..  . ....+++|++|++++ +.++......+. .+++|+.|
T Consensus        45 ~L~~L~l~~n~i~~-l~~-l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~-n~l~~~~~~~l~-~l~~L~~L  117 (197)
T 4ezg_A           45 SLTYITLANINVTD-LTG-IEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMG-KDVTSDKIPNLS-GLTSLTLL  117 (197)
T ss_dssp             TCCEEEEESSCCSC-CTT-GGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEEC-TTCBGGGSCCCT-TCTTCCEE
T ss_pred             CccEEeccCCCccC-hHH-HhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeEC-CccCcccChhhc-CCCCCCEE
Confidence            47777776543111 111 34577888888888755432  1 234568888888887 466654444433 46778888


Q ss_pred             eccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcc-cCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCC
Q 020754          162 CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL  240 (322)
Q Consensus       162 ~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~-i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~L  240 (322)
                      .++.+.+       .+.....+. .+++|++|+|++|. +++-.   .+..+++|+.|++++|.....  . ....+++|
T Consensus       118 ~Ls~n~i-------~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i~~~--~-~l~~l~~L  183 (197)
T 4ezg_A          118 DISHSAH-------DDSILTKIN-TLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDY--R-GIEDFPKL  183 (197)
T ss_dssp             ECCSSBC-------BGGGHHHHT-TCSSCCEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCCCCC--T-TGGGCSSC
T ss_pred             EecCCcc-------CcHhHHHHh-hCCCCCEEEccCCCCccccH---hhcCCCCCCEEECCCCCCcCh--H-HhccCCCC
Confidence            6654433       233344444 67888888888886 65532   355778888888888753321  1 34567777


Q ss_pred             eeeCC
Q 020754          241 KVLGP  245 (322)
Q Consensus       241 k~L~~  245 (322)
                      ++|..
T Consensus       184 ~~L~l  188 (197)
T 4ezg_A          184 NQLYA  188 (197)
T ss_dssp             CEEEE
T ss_pred             CEEEe
Confidence            77743

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.86  E-value=2.3e-10  Score=92.78  Aligned_cols=140  Identities=17%  Similarity=0.149  Sum_probs=98.4

Q ss_pred             HHHhcCCCeeEEEecCCCCh-HHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHh
Q 020754           75 LITRSSGSLRKLCVSGLHND-MMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGK  153 (322)
Q Consensus        75 l~~r~~~~l~~L~l~~~~~~-~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~  153 (322)
                      ........++.|+++++.-. ..+......+++|+.|+|++|.++..   .....+++|++|++++ +.++.. +..+..
T Consensus        18 ~~~~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~-N~l~~~-~~~~~~   92 (168)
T 2ell_A           18 LRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSE-NRIFGG-LDMLAE   92 (168)
T ss_dssp             HTTSCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEES-CCCCSC-CCHHHH
T ss_pred             hccCCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcC-CcCchH-HHHHHh
Confidence            33445577999999876422 22233345689999999999977654   3445679999999999 466553 445556


Q ss_pred             cCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHH--HHHHhcCCCCCEEeecCCCCc
Q 020754          154 HCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV--LKILSSCALLEFLDLRGCWDV  226 (322)
Q Consensus       154 ~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l--~~i~~~~~~L~~L~L~~c~~~  226 (322)
                      .+++|+.|.++.+.+.  +.    ..... ...+++|++|+|++|.++....  ...+..+++|++|++++|...
T Consensus        93 ~l~~L~~L~Ls~N~l~--~~----~~~~~-l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A           93 KLPNLTHLNLSGNKLK--DI----STLEP-LKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             HCTTCCEEECBSSSCC--SS----GGGGG-GSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             hCCCCCEEeccCCccC--cc----hhHHH-HhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            7899999988766542  10    11122 3479999999999998765432  246778999999999998644

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.83  E-value=1.6e-09  Score=98.93  Aligned_cols=137  Identities=18%  Similarity=0.184  Sum_probs=98.9

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHh-cCCCccEEeccCCCC--CCHH---HHHHHH-
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAG-RLSAVTFLDLSYCSK--IGAP---ALEAIG-  152 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~-~~~~L~~L~l~~c~~--i~~~---~l~~l~-  152 (322)
                      .+.|+.|.|+++.... +..+  ..++|++|.|..|.++...+..++. .+|+|++|+|+.+..  .++.   .+..+. 
T Consensus       171 ~P~L~~L~L~g~~~l~-l~~~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~  247 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNLS-IGKK--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS  247 (362)
T ss_dssp             CTTCCEEEEECCBTCB-CCSC--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred             CCCCcEEEEeCCCCce-eccc--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence            5689999998763211 1111  3789999999999999999998875 689999999964211  1121   222222 


Q ss_pred             -hcCCCcceeeccccccCCCCCCCCchHHHHHHh--cCCCCCEEEecCcccCHHHHHHHHh---cCCCCCEEeecCCCCc
Q 020754          153 -KHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS--TMPKLKRLEMAYHVISTEIVLKILS---SCALLEFLDLRGCWDV  226 (322)
Q Consensus       153 -~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~--~~p~L~~L~L~~~~i~~~~l~~i~~---~~~~L~~L~L~~c~~~  226 (322)
                       ..+|+|+.|.+..+.       +.+.++.+++.  .+|+|++|+|+.|.+++.++.+++.   .+++|++|+|++|. +
T Consensus       248 ~~~~p~Lr~L~L~~~~-------i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i  319 (362)
T 2ra8_A          248 KDRFPNLKWLGIVDAE-------EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY-L  319 (362)
T ss_dssp             TTTCTTCCEEEEESCT-------THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB-C
T ss_pred             cCCCCCcCEEeCCCCC-------CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc-C
Confidence             358999999876443       33445556653  5899999999999999999888875   47999999999985 5


Q ss_pred             C
Q 020754          227 K  227 (322)
Q Consensus       227 ~  227 (322)
                      +
T Consensus       320 ~  320 (362)
T 2ra8_A          320 S  320 (362)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.71  E-value=1.9e-08  Score=90.80  Aligned_cols=142  Identities=19%  Similarity=0.128  Sum_probs=68.4

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV  159 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~  159 (322)
                      .+.++.|+++++.-.....  ...+++|+.|.+.+|.++....   ...+++|++|++++| .++....   ...+++|+
T Consensus       176 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~~~~L~~L~l~~n-~l~~~~~---~~~l~~L~  246 (347)
T 4fmz_A          176 LTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP---VANMTRLNSLKIGNN-KITDLSP---LANLSQLT  246 (347)
T ss_dssp             CTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSS-CCCCCGG---GTTCTTCC
T ss_pred             CCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch---hhcCCcCCEEEccCC-ccCCCcc---hhcCCCCC
Confidence            4567888887653211111  3456667777776665443221   345566666666663 3332211   34556666


Q ss_pred             eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCC
Q 020754          160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN  239 (322)
Q Consensus       160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~  239 (322)
                      .|.++.+.+..       -  .. ...+++|++|++++|.++..   ..+..+++|+.|++++|.... ........+++
T Consensus       247 ~L~l~~n~l~~-------~--~~-~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~  312 (347)
T 4fmz_A          247 WLEIGTNQISD-------I--NA-VKDLTKLKMLNVGSNQISDI---SVLNNLSQLNSLFLNNNQLGN-EDMEVIGGLTN  312 (347)
T ss_dssp             EEECCSSCCCC-------C--GG-GTTCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCG-GGHHHHHTCTT
T ss_pred             EEECCCCccCC-------C--hh-HhcCCCcCEEEccCCccCCC---hhhcCCCCCCEEECcCCcCCC-cChhHhhcccc
Confidence            66655443211       0  11 12455555555555554432   123345555555555553221 22222344555


Q ss_pred             CeeeC
Q 020754          240 LKVLG  244 (322)
Q Consensus       240 Lk~L~  244 (322)
                      |++|.
T Consensus       313 L~~L~  317 (347)
T 4fmz_A          313 LTTLF  317 (347)
T ss_dssp             CSEEE
T ss_pred             CCEEE
Confidence            55553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.71  E-value=1.2e-07  Score=78.52  Aligned_cols=122  Identities=8%  Similarity=0.128  Sum_probs=77.1

Q ss_pred             hHHHHHHHHhCCCCCEEecCCC-CCCHHHHHHHHhcC---CCccEEeccCCCCCCHHHHHHHHhc---CCCcceeecccc
Q 020754           94 DMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRL---SAVTFLDLSYCSKIGAPALEAIGKH---CKLLVVLCRNMH  166 (322)
Q Consensus        94 ~~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~---~~L~~L~l~~c~~i~~~~l~~l~~~---c~~L~~L~l~~~  166 (322)
                      +..+..+..+.+.|++|+|+++ .|.+.+...++..+   ..|+.|+|++ +.+++.+..+|+..   -+.|++|.|..+
T Consensus        30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~-n~igd~ga~alA~aL~~N~tL~~L~L~~N  108 (197)
T 1pgv_A           30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN-TAISDSEARGLIELIETSPSLRVLNVESN  108 (197)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT-SCCBHHHHTTHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccC-CCCChHHHHHHHHHHhcCCccCeEecCCC
Confidence            4456666666777888888775 77877777666654   5688888887 57777776655543   255666654433


Q ss_pred             ccCCCCCCCCchHHHHHHhcC---CCCCEEEecCc---ccCHHHHHHHHh---cCCCCCEEeecCC
Q 020754          167 PLDTADKLSQDDEANAIASTM---PKLKRLEMAYH---VISTEIVLKILS---SCALLEFLDLRGC  223 (322)
Q Consensus       167 ~l~~~~~~~~~~~~~~l~~~~---p~L~~L~L~~~---~i~~~~l~~i~~---~~~~L~~L~L~~c  223 (322)
                             .+.+.++.+|+..+   +.|++|+|+++   .+.+.+..+|+.   .-+.|+.|+++.+
T Consensus       109 -------~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          109 -------FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             -------BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             -------cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence                   34456666655443   45777777643   566666554443   3467777777654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.70  E-value=3.3e-08  Score=88.19  Aligned_cols=78  Identities=17%  Similarity=0.152  Sum_probs=36.9

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV  159 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~  159 (322)
                      ..+++.|+++++.-.....  ...+++|+.|+|++|.++..  . -...+++|++|++++| .++.-  .. ...+++|+
T Consensus        62 l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~  132 (308)
T 1h6u_A           62 LNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLDLTST-QITDV--TP-LAGLSNLQ  132 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEECTTS-CCCCC--GG-GTTCTTCC
T ss_pred             cCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEECCCC-CCCCc--hh-hcCCCCCC
Confidence            3456666665543111111  23456666666666644432  1 1234566666666653 33321  11 23455666


Q ss_pred             eeecccc
Q 020754          160 VLCRNMH  166 (322)
Q Consensus       160 ~L~l~~~  166 (322)
                      .|.++.+
T Consensus       133 ~L~l~~n  139 (308)
T 1h6u_A          133 VLYLDLN  139 (308)
T ss_dssp             EEECCSS
T ss_pred             EEECCCC
Confidence            6655443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.69  E-value=3.6e-09  Score=86.42  Aligned_cols=127  Identities=17%  Similarity=0.135  Sum_probs=59.7

Q ss_pred             CCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH
Q 020754          104 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  183 (322)
Q Consensus       104 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l  183 (322)
                      +++|+.|.+.+|.++.  +..+...+++|+.|++++ +.++.-   .....+++|+.|.++.+.+.  +  +    ...+
T Consensus        18 ~~~L~~L~l~~n~l~~--i~~~~~~~~~L~~L~Ls~-N~l~~~---~~l~~l~~L~~L~Ls~N~l~--~--~----~~~~   83 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSD-NEIRKL---DGFPLLRRLKTLLVNNNRIC--R--I----GEGL   83 (176)
T ss_dssp             TTSCEEEECTTSCCCS--CCCGGGGTTCCSEEECCS-SCCCEE---CCCCCCSSCCEEECCSSCCC--E--E----CSCH
T ss_pred             cCCceEEEeeCCCCch--hHHhhhcCCCCCEEECCC-CCCCcc---cccccCCCCCEEECCCCccc--c--c----Ccch
Confidence            4455666666654442  122333334666666665 344431   11223455666655444331  0  0    0011


Q ss_pred             HhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCCh--HHHHhcCCCCeeeC
Q 020754          184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLG  244 (322)
Q Consensus       184 ~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~--~~l~~~~~~Lk~L~  244 (322)
                      ...+|+|++|+|++|.++.-.....+..+++|+.|++++|.......  ..+...+|+|++|.
T Consensus        84 ~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld  146 (176)
T 1a9n_A           84 DQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  146 (176)
T ss_dssp             HHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             hhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeC
Confidence            12566666666666665432211133456666666666665332211  11345666666663

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.69  E-value=6.7e-09  Score=86.42  Aligned_cols=125  Identities=14%  Similarity=0.074  Sum_probs=89.9

Q ss_pred             hCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHH
Q 020754          103 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  182 (322)
Q Consensus       103 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~  182 (322)
                      .+++|+.|+++++.+++  +. -...+++|++|++++| .++.-  . ....+++|++|.++.+.+.       ......
T Consensus        42 ~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l~~n-~~~~~--~-~l~~l~~L~~L~l~~n~l~-------~~~~~~  107 (197)
T 4ezg_A           42 QMNSLTYITLANINVTD--LT-GIEYAHNIKDLTINNI-HATNY--N-PISGLSNLERLRIMGKDVT-------SDKIPN  107 (197)
T ss_dssp             HHHTCCEEEEESSCCSC--CT-TGGGCTTCSEEEEESC-CCSCC--G-GGTTCTTCCEEEEECTTCB-------GGGSCC
T ss_pred             hcCCccEEeccCCCccC--hH-HHhcCCCCCEEEccCC-CCCcc--h-hhhcCCCCCEEEeECCccC-------cccChh
Confidence            46799999999997763  22 2456899999999996 55432  2 2345899999988766542       111222


Q ss_pred             HHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          183 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       183 l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      + ..+++|++|+|++|.+++.... .+..+++|++|++++|..++.- . ....+++|++|.+
T Consensus       108 l-~~l~~L~~L~Ls~n~i~~~~~~-~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l  166 (197)
T 4ezg_A          108 L-SGLTSLTLLDISHSAHDDSILT-KINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNI  166 (197)
T ss_dssp             C-TTCTTCCEEECCSSBCBGGGHH-HHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEEC
T ss_pred             h-cCCCCCCEEEecCCccCcHhHH-HHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEEC
Confidence            3 3789999999999999875544 3457999999999999745422 2 3567889988854

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.68  E-value=2e-08  Score=88.87  Aligned_cols=141  Identities=21%  Similarity=0.133  Sum_probs=81.7

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV  159 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~  159 (322)
                      ..+++.|+++++.-.....  ...+++|+.|.|++|.++..  .. ...+++|++|++++| .++.-  .. ...+++|+
T Consensus        67 l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~L~~n-~i~~~--~~-l~~l~~L~  137 (291)
T 1h6t_A           67 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SS-LKDLKKLKSLSLEHN-GISDI--NG-LVHLPQLE  137 (291)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GG-GTTCTTCCEEECTTS-CCCCC--GG-GGGCTTCC
T ss_pred             CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hh-hccCCCCCEEECCCC-cCCCC--hh-hcCCCCCC
Confidence            3557777776543111111  34567777777777765542  22 345677777777773 44432  12 23567777


Q ss_pred             eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCC
Q 020754          160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN  239 (322)
Q Consensus       160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~  239 (322)
                      .|.++.+.+.       .-  .. ...+++|++|+|++|.+++...   +..+++|+.|++++|.... -. . ...+++
T Consensus       138 ~L~l~~n~l~-------~~--~~-l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~i~~-l~-~-l~~l~~  201 (291)
T 1h6t_A          138 SLYLGNNKIT-------DI--TV-LSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISD-LR-A-LAGLKN  201 (291)
T ss_dssp             EEECCSSCCC-------CC--GG-GGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCB-CG-G-GTTCTT
T ss_pred             EEEccCCcCC-------cc--hh-hccCCCCCEEEccCCccccchh---hcCCCccCEEECCCCcCCC-Ch-h-hccCCC
Confidence            7766555432       11  12 2367888888888887665332   5567888888888874332 11 2 456777


Q ss_pred             CeeeCC
Q 020754          240 LKVLGP  245 (322)
Q Consensus       240 Lk~L~~  245 (322)
                      |+.|.+
T Consensus       202 L~~L~l  207 (291)
T 1h6t_A          202 LDVLEL  207 (291)
T ss_dssp             CSEEEE
T ss_pred             CCEEEC
Confidence            777754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.68  E-value=2.2e-08  Score=90.43  Aligned_cols=141  Identities=16%  Similarity=0.110  Sum_probs=90.2

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV  159 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~  159 (322)
                      ...++.|+++++.-.....  ...+++|+.|++++|.++....   ...+++|+.|+++++ .++....   ...+++|+
T Consensus       154 l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~---~~~~~~L~  224 (347)
T 4fmz_A          154 MTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVN-QITDITP---VANMTRLN  224 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG---GGGCTTCCEEECCSS-CCCCCGG---GGGCTTCC
T ss_pred             CCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc---ccCCCccceeecccC-CCCCCch---hhcCCcCC
Confidence            4568888887754211111  3468888888888886654221   456788888888874 5443222   45678888


Q ss_pred             eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCC
Q 020754          160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN  239 (322)
Q Consensus       160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~  239 (322)
                      .|.++.+.+.       ....   ...+++|++|++++|.++..   ..+..+++|+.|++++|.... -  .....+++
T Consensus       225 ~L~l~~n~l~-------~~~~---~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~l~~n~l~~-~--~~~~~l~~  288 (347)
T 4fmz_A          225 SLKIGNNKIT-------DLSP---LANLSQLTWLEIGTNQISDI---NAVKDLTKLKMLNVGSNQISD-I--SVLNNLSQ  288 (347)
T ss_dssp             EEECCSSCCC-------CCGG---GTTCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCC-C--GGGGGCTT
T ss_pred             EEEccCCccC-------CCcc---hhcCCCCCEEECCCCccCCC---hhHhcCCCcCEEEccCCccCC-C--hhhcCCCC
Confidence            8877655432       1111   34788888888888876653   234577888888888885332 1  22467788


Q ss_pred             CeeeCC
Q 020754          240 LKVLGP  245 (322)
Q Consensus       240 Lk~L~~  245 (322)
                      |++|.+
T Consensus       289 L~~L~L  294 (347)
T 4fmz_A          289 LNSLFL  294 (347)
T ss_dssp             CSEEEC
T ss_pred             CCEEEC
Confidence            888854

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.65  E-value=1.8e-08  Score=89.20  Aligned_cols=139  Identities=19%  Similarity=0.179  Sum_probs=97.5

Q ss_pred             CeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCccee
Q 020754           82 SLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL  161 (322)
Q Consensus        82 ~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L  161 (322)
                      .++.|+++++.-... .. ...+++|+.|+|++|.++...  . ...+++|+.|++++ +.++.  +.. ...+++|+.|
T Consensus        47 ~L~~L~l~~~~i~~~-~~-~~~l~~L~~L~L~~n~l~~~~--~-l~~l~~L~~L~l~~-n~l~~--~~~-l~~l~~L~~L  117 (291)
T 1h6t_A           47 SIDQIIANNSDIKSV-QG-IQYLPNVTKLFLNGNKLTDIK--P-LANLKNLGWLFLDE-NKVKD--LSS-LKDLKKLKSL  117 (291)
T ss_dssp             TCCEEECTTSCCCCC-TT-GGGCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEECCS-SCCCC--GGG-GTTCTTCCEE
T ss_pred             cccEEEccCCCcccC-hh-HhcCCCCCEEEccCCccCCCc--c-cccCCCCCEEECCC-CcCCC--Chh-hccCCCCCEE
Confidence            488899877542111 12 356899999999999776532  2 56789999999998 45554  222 4567999999


Q ss_pred             eccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCe
Q 020754          162 CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLK  241 (322)
Q Consensus       162 ~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk  241 (322)
                      .++.+.+.  +       +..+ ..+++|++|+|++|.++.-   ..+..+++|+.|++++|.... ...  ...+++|+
T Consensus       118 ~L~~n~i~--~-------~~~l-~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~-~~~--l~~l~~L~  181 (291)
T 1h6t_A          118 SLEHNGIS--D-------INGL-VHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQ  181 (291)
T ss_dssp             ECTTSCCC--C-------CGGG-GGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCC
T ss_pred             ECCCCcCC--C-------Chhh-cCCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCcccc-chh--hcCCCccC
Confidence            88766542  1       1123 3789999999999987754   345678999999999985432 222  67888999


Q ss_pred             eeCC
Q 020754          242 VLGP  245 (322)
Q Consensus       242 ~L~~  245 (322)
                      +|.+
T Consensus       182 ~L~L  185 (291)
T 1h6t_A          182 NLYL  185 (291)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9865

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.61  E-value=3.1e-08  Score=88.35  Aligned_cols=138  Identities=16%  Similarity=0.133  Sum_probs=83.5

Q ss_pred             CeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCccee
Q 020754           82 SLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL  161 (322)
Q Consensus        82 ~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L  161 (322)
                      .+++|+++++.-.. +.. ...+++|+.|+|++|.++....   ...+++|++|+++++ .++.-  .. ...+++|+.|
T Consensus        42 ~L~~L~l~~~~i~~-l~~-~~~l~~L~~L~L~~n~i~~~~~---~~~l~~L~~L~L~~n-~l~~~--~~-~~~l~~L~~L  112 (308)
T 1h6u_A           42 GITTLSAFGTGVTT-IEG-VQYLNNLIGLELKDNQITDLAP---LKNLTKITELELSGN-PLKNV--SA-IAGLQSIKTL  112 (308)
T ss_dssp             TCCEEECTTSCCCC-CTT-GGGCTTCCEEECCSSCCCCCGG---GTTCCSCCEEECCSC-CCSCC--GG-GTTCTTCCEE
T ss_pred             CcCEEEeeCCCccC-chh-hhccCCCCEEEccCCcCCCChh---HccCCCCCEEEccCC-cCCCc--hh-hcCCCCCCEE
Confidence            58999998764211 112 3568999999999997765322   567899999999994 55542  22 3467999999


Q ss_pred             eccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCe
Q 020754          162 CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLK  241 (322)
Q Consensus       162 ~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk  241 (322)
                      .++.+.+.-  .       .. ...+++|++|+|++|.++....   +..+++|+.|++++|.... -..  ...+++|+
T Consensus       113 ~l~~n~l~~--~-------~~-l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~  176 (308)
T 1h6u_A          113 DLTSTQITD--V-------TP-LAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGNAQVSD-LTP--LANLSKLT  176 (308)
T ss_dssp             ECTTSCCCC--C-------GG-GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCC-CGG--GTTCTTCC
T ss_pred             ECCCCCCCC--c-------hh-hcCCCCCCEEECCCCccCcCcc---ccCCCCccEEEccCCcCCC-Chh--hcCCCCCC
Confidence            887665421  1       11 2356666666666665543221   3455666666666653221 111  34455555


Q ss_pred             eeC
Q 020754          242 VLG  244 (322)
Q Consensus       242 ~L~  244 (322)
                      +|.
T Consensus       177 ~L~  179 (308)
T 1h6u_A          177 TLK  179 (308)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.58  E-value=2.5e-08  Score=97.15  Aligned_cols=141  Identities=22%  Similarity=0.158  Sum_probs=94.9

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV  159 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~  159 (322)
                      .+.|+.|+|+++.-.....  ...+++|+.|.|++|.++..  . ....+++|+.|+|++| .++.  +.. ...+++|+
T Consensus        64 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N-~l~~--l~~-l~~l~~L~  134 (605)
T 1m9s_A           64 LPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSLSLEHN-GISD--ING-LVHLPQLE  134 (605)
T ss_dssp             CTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEEECTTS-CCCC--CGG-GGGCTTCS
T ss_pred             CCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--h-hhccCCCCCEEEecCC-CCCC--Ccc-ccCCCccC
Confidence            5678999998754211111  45788999999999866542  2 2356789999999984 5554  222 34678999


Q ss_pred             eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCC
Q 020754          160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN  239 (322)
Q Consensus       160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~  239 (322)
                      .|.++.+.+.  +     -  .. ...+++|+.|+|++|.++....   +..+++|+.|+|++|.....   .....+++
T Consensus       135 ~L~Ls~N~l~--~-----l--~~-l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l---~~l~~l~~  198 (605)
T 1m9s_A          135 SLYLGNNKIT--D-----I--TV-LSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL---RALAGLKN  198 (605)
T ss_dssp             EEECCSSCCC--C-----C--GG-GGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC---GGGTTCTT
T ss_pred             EEECCCCccC--C-----c--hh-hcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCC---hHHccCCC
Confidence            9988766542  1     1  22 3478899999999988765332   56789999999998853321   22467788


Q ss_pred             CeeeCC
Q 020754          240 LKVLGP  245 (322)
Q Consensus       240 Lk~L~~  245 (322)
                      |+.|.+
T Consensus       199 L~~L~L  204 (605)
T 1m9s_A          199 LDVLEL  204 (605)
T ss_dssp             CSEEEC
T ss_pred             CCEEEc
Confidence            888865

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.58  E-value=1.2e-08  Score=91.08  Aligned_cols=157  Identities=15%  Similarity=0.100  Sum_probs=80.6

Q ss_pred             CCCeeEEEecCCCCh-HHHHHH-HHhCCCCCEEecCCCCCCHH--HHHHHHhc-CCCccEEeccCCCCCCHHHHHHHHhc
Q 020754           80 SGSLRKLCVSGLHND-MMFSLI-AENAGSLQTLRLPRSEMSDS--IVAQIAGR-LSAVTFLDLSYCSKIGAPALEAIGKH  154 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~-~~l~~l-~~~~~~L~~L~L~~~~i~~~--~l~~l~~~-~~~L~~L~l~~c~~i~~~~l~~l~~~  154 (322)
                      ..++++|+++++.-. .....+ ...+++|+.|+|++|.++..  .+..+... +++|++|++++ +.++......+ ..
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~-N~l~~~~~~~~-~~  171 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQ-AHSLNFSCEQV-RV  171 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEES-CSCCCCCTTTC-CC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeC-CCCccchHHHh-cc
Confidence            345777777543211 111111 14466777777777754432  22222211 26777777776 34443222222 24


Q ss_pred             CCCcceeeccccccCCCCCCCCch-HH-HHH-HhcCCCCCEEEecCcccCH--HHHHHHHhcCCCCCEEeecCCCCcCCC
Q 020754          155 CKLLVVLCRNMHPLDTADKLSQDD-EA-NAI-ASTMPKLKRLEMAYHVIST--EIVLKILSSCALLEFLDLRGCWDVKLD  229 (322)
Q Consensus       155 c~~L~~L~l~~~~l~~~~~~~~~~-~~-~~l-~~~~p~L~~L~L~~~~i~~--~~l~~i~~~~~~L~~L~L~~c~~~~~~  229 (322)
                      +++|+.|.++.+.+       ... .. ..+ ...+++|++|+|++|.++.  .....++..+++|++|+|++|......
T Consensus       172 l~~L~~L~Ls~N~l-------~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  244 (312)
T 1wwl_A          172 FPALSTLDLSDNPE-------LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA  244 (312)
T ss_dssp             CSSCCEEECCSCTT-------CHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred             CCCCCEEECCCCCc-------CcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence            56777776654432       111 11 122 1467888888888887763  333355567788888888887533211


Q ss_pred             hHHHHhcCCCCeeeCC
Q 020754          230 DKFMKGNFPNLKVLGP  245 (322)
Q Consensus       230 ~~~l~~~~~~Lk~L~~  245 (322)
                      .......+++|++|.+
T Consensus       245 ~~~~~~~l~~L~~L~L  260 (312)
T 1wwl_A          245 GAPSCDWPSQLNSLNL  260 (312)
T ss_dssp             CCSCCCCCTTCCEEEC
T ss_pred             chhhhhhcCCCCEEEC
Confidence            1122234567777643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.57  E-value=1.2e-08  Score=90.92  Aligned_cols=154  Identities=15%  Similarity=0.055  Sum_probs=81.3

Q ss_pred             CeeEEEecCCCChHHH-HHHH-HhCCCCCEEecCCCCCCHHH----HHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcC
Q 020754           82 SLRKLCVSGLHNDMMF-SLIA-ENAGSLQTLRLPRSEMSDSI----VAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHC  155 (322)
Q Consensus        82 ~l~~L~l~~~~~~~~l-~~l~-~~~~~L~~L~L~~~~i~~~~----l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c  155 (322)
                      .+++|+++++.-.... ..++ ..+++|++|+|++|.++...    ...+ ..+++|++|++++ +.++..... ....+
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~-~~~~~L~~L~Ls~-n~l~~~~~~-~~~~l  168 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ-WLKPGLKVLSIAQ-AHSPAFSCE-QVRAF  168 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT-TBCSCCCEEEEEC-CSSCCCCTT-SCCCC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh-hhccCCCEEEeeC-CCcchhhHH-HhccC
Confidence            3777777654311111 1111 45677777777777665311    1122 2567777777777 344322111 12345


Q ss_pred             CCcceeeccccccCCCCCCCCchH-HH--HHHhcCCCCCEEEecCcccC--HHHHHHHHhcCCCCCEEeecCCCCcCCCh
Q 020754          156 KLLVVLCRNMHPLDTADKLSQDDE-AN--AIASTMPKLKRLEMAYHVIS--TEIVLKILSSCALLEFLDLRGCWDVKLDD  230 (322)
Q Consensus       156 ~~L~~L~l~~~~l~~~~~~~~~~~-~~--~l~~~~p~L~~L~L~~~~i~--~~~l~~i~~~~~~L~~L~L~~c~~~~~~~  230 (322)
                      ++|++|.++.+.+       .... ..  .....+|+|++|+|++|.++  ......++..+++|++|+|++|.......
T Consensus       169 ~~L~~L~Ls~N~l-------~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p  241 (310)
T 4glp_A          169 PALTSLDLSDNPG-------LGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVN  241 (310)
T ss_dssp             TTCCEEECCSCTT-------CHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC
T ss_pred             CCCCEEECCCCCC-------ccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccch
Confidence            7777776654432       1111 11  11136788888888888876  33333455677888888888875433211


Q ss_pred             HHHH--hcCCCCeeeCC
Q 020754          231 KFMK--GNFPNLKVLGP  245 (322)
Q Consensus       231 ~~l~--~~~~~Lk~L~~  245 (322)
                      ..+.  ...++|++|.+
T Consensus       242 ~~~~~~~~~~~L~~L~L  258 (310)
T 4glp_A          242 PSAPRCMWSSALNSLNL  258 (310)
T ss_dssp             SCCSSCCCCTTCCCEEC
T ss_pred             hhHHhccCcCcCCEEEC
Confidence            1121  11257777754

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.56  E-value=6.8e-09  Score=93.55  Aligned_cols=156  Identities=15%  Similarity=0.089  Sum_probs=78.7

Q ss_pred             cCCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCc
Q 020754           79 SSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL  158 (322)
Q Consensus        79 ~~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L  158 (322)
                      ....++.|++++..-......+ ..+++|+.|+|++|.++  .+......+++|++|+|++ +.++  .+..-...+++|
T Consensus        79 ~~~~l~~L~L~~n~l~~lp~~l-~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~-n~l~--~lp~~l~~l~~L  152 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQFPDQA-FRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLAR-NPLR--ALPASIASLNRL  152 (328)
T ss_dssp             TSTTCCEEEEESSCCSSCCSCG-GGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEES-CCCC--CCCGGGGGCTTC
T ss_pred             cccceeEEEccCCCchhcChhh-hhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCC-Cccc--cCcHHHhcCcCC
Confidence            3466888888764322111112 24778888888888666  2333335568888888887 4555  222223456788


Q ss_pred             ceeeccccccCCCCCC-CCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcC
Q 020754          159 VVLCRNMHPLDTADKL-SQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNF  237 (322)
Q Consensus       159 ~~L~l~~~~l~~~~~~-~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~  237 (322)
                      +.|.++.+.....-.. +...........+++|++|+|++|.++  .+..-+..+++|++|+|++|....... . ...+
T Consensus       153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~l~~-~-l~~l  228 (328)
T 4fcg_A          153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSALGP-A-IHHL  228 (328)
T ss_dssp             CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCCCCG-G-GGGC
T ss_pred             CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCcCch-h-hccC
Confidence            8887765432110000 000000000113566666666666554  222223455666666666654332111 1 3455


Q ss_pred             CCCeeeC
Q 020754          238 PNLKVLG  244 (322)
Q Consensus       238 ~~Lk~L~  244 (322)
                      ++|++|.
T Consensus       229 ~~L~~L~  235 (328)
T 4fcg_A          229 PKLEELD  235 (328)
T ss_dssp             TTCCEEE
T ss_pred             CCCCEEE
Confidence            5555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.56  E-value=3.7e-09  Score=91.44  Aligned_cols=152  Identities=14%  Similarity=0.087  Sum_probs=97.6

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV  160 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~  160 (322)
                      ..++.|++++..-..........+++|+.|+|++|.++.... .....+++|++|++++ +.++.-.. .....+++|+.
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~-n~l~~~~~-~~~~~l~~L~~  111 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA-GVFDDLTELGTLGLAN-NQLASLPL-GVFDHLTQLDK  111 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCTTCCEEECTT-SCCCCCCT-TTTTTCTTCCE
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH-hHhccCCcCCEEECCC-CcccccCh-hHhcccCCCCE
Confidence            468999998754221111123468899999999996664211 2234679999999998 56653221 22346789999


Q ss_pred             eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCC
Q 020754          161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL  240 (322)
Q Consensus       161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~L  240 (322)
                      |.++.+.+.  +.  .    ......+++|++|+|++|.++.... ..+..+++|++|+|++|.... -.......+++|
T Consensus       112 L~L~~N~l~--~~--~----~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L  181 (251)
T 3m19_A          112 LYLGGNQLK--SL--P----SGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQS-VPHGAFDRLGKL  181 (251)
T ss_dssp             EECCSSCCC--CC--C----TTTTTTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTC
T ss_pred             EEcCCCcCC--Cc--C----hhHhccCCcccEEECcCCcCCccCH-HHcCcCcCCCEEECCCCcCCc-cCHHHHhCCCCC
Confidence            988766543  11  0    1112368999999999998763221 234578999999999986443 222334677888


Q ss_pred             eeeCC
Q 020754          241 KVLGP  245 (322)
Q Consensus       241 k~L~~  245 (322)
                      ++|.+
T Consensus       182 ~~L~l  186 (251)
T 3m19_A          182 QTITL  186 (251)
T ss_dssp             CEEEC
T ss_pred             CEEEe
Confidence            88854

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.54  E-value=7.6e-09  Score=90.58  Aligned_cols=150  Identities=13%  Similarity=0.106  Sum_probs=69.3

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV  160 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~  160 (322)
                      +.++.|++++..-.. +. ....+++|+.|.|++|.++... ......+++|++|++++| .++... ......+++|+.
T Consensus        63 ~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~  137 (272)
T 3rfs_A           63 PNVRYLALGGNKLHD-IS-ALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKELVLVEN-QLQSLP-DGVFDKLTNLTY  137 (272)
T ss_dssp             TTCCEEECTTSCCCC-CG-GGTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCE
T ss_pred             CCCcEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCccC-hhHhcCCcCCCEEECCCC-cCCccC-HHHhccCCCCCE
Confidence            446666665432111 11 1234566666666666444211 111234566666666653 333111 111234566666


Q ss_pred             eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCC
Q 020754          161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL  240 (322)
Q Consensus       161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~L  240 (322)
                      |.++.+.+.  +.     . ......+++|++|+|++|.++... ...+..+++|++|++++|.... ........+++|
T Consensus       138 L~L~~n~l~--~~-----~-~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L  207 (272)
T 3rfs_A          138 LNLAHNQLQ--SL-----P-KGVFDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSL  207 (272)
T ss_dssp             EECCSSCCC--CC-----C-TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTC
T ss_pred             EECCCCccC--cc-----C-HHHhccCccCCEEECCCCCcCccC-HHHhcCCccCCEEECCCCcCCc-cCHHHHhCCcCC
Confidence            655544332  10     0 011135667777777776655211 1223456677777777664332 222233456666


Q ss_pred             eeeCC
Q 020754          241 KVLGP  245 (322)
Q Consensus       241 k~L~~  245 (322)
                      ++|.+
T Consensus       208 ~~L~l  212 (272)
T 3rfs_A          208 QYIWL  212 (272)
T ss_dssp             CEEEC
T ss_pred             CEEEc
Confidence            66643

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.54  E-value=1.5e-08  Score=88.13  Aligned_cols=48  Identities=19%  Similarity=0.290  Sum_probs=44.1

Q ss_pred             CcccCCHHHHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCceeeeccc
Q 020754            9 HWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIE   57 (322)
Q Consensus         9 ~w~~LP~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw~~i~l~   57 (322)
                      .|++||.||+.+||+||+.+|+++ +++|||+|+.++.++.+|+.+-..
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~-l~~vcr~Wr~la~D~~LWr~~l~r   51 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQ-LGSTNHYWNETVRDPILWRYFLLR   51 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHH-HHTTCHHHHHHHTCHHHHHHHHHS
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHhccchHHHHHHhc
Confidence            578999999999999999999888 799999999999999999987443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=98.54  E-value=2.1e-08  Score=89.53  Aligned_cols=138  Identities=16%  Similarity=0.113  Sum_probs=66.6

Q ss_pred             CCCeeEEEecCCCC---hHHHHHHHH-hCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHH-HH-HHH-H
Q 020754           80 SGSLRKLCVSGLHN---DMMFSLIAE-NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAP-AL-EAI-G  152 (322)
Q Consensus        80 ~~~l~~L~l~~~~~---~~~l~~l~~-~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~-~l-~~l-~  152 (322)
                      ...++.|++++..-   ...+..+.. ..++|+.|+|++|.++..... ....+++|++|++++ +.+... .+ ..+ .
T Consensus       120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE-QVRVFPALSTLDLSD-NPELGERGLISALCP  197 (312)
T ss_dssp             SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTT-TCCCCSSCCEEECCS-CTTCHHHHHHHHSCT
T ss_pred             CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHH-HhccCCCCCEEECCC-CCcCcchHHHHHHHh
Confidence            34577777765321   112222111 126777777777654432111 123456777777776 343332 22 122 1


Q ss_pred             hcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020754          153 KHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  224 (322)
Q Consensus       153 ~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~  224 (322)
                      ..+++|+.|.++.+.+.  +   .......+...+++|++|+|++|.++.......+..+++|++|+|++|.
T Consensus       198 ~~l~~L~~L~L~~N~l~--~---~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~  264 (312)
T 1wwl_A          198 LKFPTLQVLALRNAGME--T---PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG  264 (312)
T ss_dssp             TSCTTCCEEECTTSCCC--C---HHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC
T ss_pred             ccCCCCCEEECCCCcCc--c---hHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc
Confidence            45566777765544331  0   0112233444566777777777665543211122345667777777664

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.54  E-value=3.4e-09  Score=88.84  Aligned_cols=144  Identities=15%  Similarity=0.161  Sum_probs=85.3

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV  160 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~  160 (322)
                      ..++.|++++..-..........+++|+.|+|++|.++.. .......+++|++|++++ +.++.-. ......+++|+.
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~-n~l~~~~-~~~~~~l~~L~~  104 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLST-NQLQSLP-NGVFDKLTQLKE  104 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCS-SCCCCCC-TTTTTTCTTCCE
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCC-CcCCccC-HhHhcCccCCCE
Confidence            4588888876532222222234578899999988866521 112234578888999887 4554211 122245688888


Q ss_pred             eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCC
Q 020754          161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL  240 (322)
Q Consensus       161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~L  240 (322)
                      |.++.+.+.  +.  .    ......+++|++|+|++|.++... ...+..+++|++|++++|...        ..|++|
T Consensus       105 L~L~~N~l~--~~--~----~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~~~--------~~~~~l  167 (208)
T 2o6s_A          105 LALNTNQLQ--SL--P----DGVFDKLTQLKDLRLYQNQLKSVP-DGVFDRLTSLQYIWLHDNPWD--------CTCPGI  167 (208)
T ss_dssp             EECCSSCCC--CC--C----TTTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEECCSCCBC--------CCTTTT
T ss_pred             EEcCCCcCc--cc--C----HhHhccCCcCCEEECCCCccceeC-HHHhccCCCccEEEecCCCee--------cCCCCH
Confidence            877665442  11  0    011236788888888888765321 123456788888888887543        245566


Q ss_pred             eeeC
Q 020754          241 KVLG  244 (322)
Q Consensus       241 k~L~  244 (322)
                      +.|.
T Consensus       168 ~~L~  171 (208)
T 2o6s_A          168 RYLS  171 (208)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.53  E-value=1.9e-08  Score=87.71  Aligned_cols=139  Identities=16%  Similarity=0.161  Sum_probs=92.9

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV  160 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~  160 (322)
                      ..++.|+++++.-.. +.. ...+++|+.|+|++|.++....   ...+++|+.|++++ +.++.  +..+..  ++|+.
T Consensus        41 ~~L~~L~l~~n~i~~-l~~-l~~l~~L~~L~L~~N~i~~~~~---l~~l~~L~~L~L~~-N~l~~--l~~~~~--~~L~~  110 (263)
T 1xeu_A           41 SGVQNFNGDNSNIQS-LAG-MQFFTNLKELHLSHNQISDLSP---LKDLTKLEELSVNR-NRLKN--LNGIPS--ACLSR  110 (263)
T ss_dssp             TTCSEEECTTSCCCC-CTT-GGGCTTCCEEECCSSCCCCCGG---GTTCSSCCEEECCS-SCCSC--CTTCCC--SSCCE
T ss_pred             CcCcEEECcCCCccc-chH-HhhCCCCCEEECCCCccCCChh---hccCCCCCEEECCC-CccCC--cCcccc--CcccE
Confidence            458888887753211 112 3468899999999987665322   46789999999998 45543  112222  78888


Q ss_pred             eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCC
Q 020754          161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL  240 (322)
Q Consensus       161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~L  240 (322)
                      |.++.+.+.  +     -  .. ...+++|++|+|++|.+++..   .+..+++|+.|++++|.....   .....+++|
T Consensus       111 L~L~~N~l~--~-----~--~~-l~~l~~L~~L~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L  174 (263)
T 1xeu_A          111 LFLDNNELR--D-----T--DS-LIHLKNLEILSIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNT---GGLTRLKKV  174 (263)
T ss_dssp             EECCSSCCS--B-----S--GG-GTTCTTCCEEECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBC---TTSTTCCCC
T ss_pred             EEccCCccC--C-----C--hh-hcCcccccEEECCCCcCCCCh---HHccCCCCCEEECCCCcCcch---HHhccCCCC
Confidence            887766442  1     1  12 347899999999999877642   356789999999999864432   334567888


Q ss_pred             eeeCC
Q 020754          241 KVLGP  245 (322)
Q Consensus       241 k~L~~  245 (322)
                      +.|.+
T Consensus       175 ~~L~l  179 (263)
T 1xeu_A          175 NWIDL  179 (263)
T ss_dssp             CEEEE
T ss_pred             CEEeC
Confidence            88754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.51  E-value=1.4e-08  Score=88.82  Aligned_cols=148  Identities=14%  Similarity=0.089  Sum_probs=99.5

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV  160 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~  160 (322)
                      ..++.|.++++.-.. +.. ...+++|+.|+|++|.++..  . ....+++|++|++++| .++.-. ......+++|+.
T Consensus        41 ~~L~~L~l~~~~i~~-~~~-l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~  113 (272)
T 3rfs_A           41 NSIDQIIANNSDIKS-VQG-IQYLPNVRYLALGGNKLHDI--S-ALKELTNLTYLILTGN-QLQSLP-NGVFDKLTNLKE  113 (272)
T ss_dssp             TTCCEEECTTSCCCC-CTT-GGGCTTCCEEECTTSCCCCC--G-GGTTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCE
T ss_pred             cceeeeeeCCCCccc-ccc-cccCCCCcEEECCCCCCCCc--h-hhcCCCCCCEEECCCC-ccCccC-hhHhcCCcCCCE
Confidence            458899997754211 111 34689999999999977652  2 3356899999999984 555321 122346799999


Q ss_pred             eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCC
Q 020754          161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL  240 (322)
Q Consensus       161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~L  240 (322)
                      |.++.+.+....        ......+++|++|+|++|.++... ...+..+++|+.|++++|.... -.......+++|
T Consensus       114 L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L  183 (272)
T 3rfs_A          114 LVLVENQLQSLP--------DGVFDKLTNLTYLNLAHNQLQSLP-KGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQL  183 (272)
T ss_dssp             EECTTSCCCCCC--------TTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTC
T ss_pred             EECCCCcCCccC--------HHHhccCCCCCEEECCCCccCccC-HHHhccCccCCEEECCCCCcCc-cCHHHhcCCccC
Confidence            988766543110        111247899999999999876322 2234578999999999995432 233345678999


Q ss_pred             eeeCC
Q 020754          241 KVLGP  245 (322)
Q Consensus       241 k~L~~  245 (322)
                      ++|.+
T Consensus       184 ~~L~L  188 (272)
T 3rfs_A          184 KDLRL  188 (272)
T ss_dssp             CEEEC
T ss_pred             CEEEC
Confidence            99965

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.51  E-value=1.7e-09  Score=97.45  Aligned_cols=150  Identities=19%  Similarity=0.199  Sum_probs=98.4

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHH--------
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAI--------  151 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l--------  151 (322)
                      ..+|+.|++++..-.. +......+++|+.|+|++|.++  .+......+++|++|++++|+.++. ....+        
T Consensus       103 l~~L~~L~L~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~n~~~~~-~p~~~~~~~~~~~  178 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRELSIRACPELTE-LPEPLASTDASGE  178 (328)
T ss_dssp             GTTCSEEEEESSCCCC-CCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCEEEEEEETTCCC-CCSCSEEEC-CCC
T ss_pred             CCCCCEEECCCCCccc-hhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCEEECCCCCCccc-cChhHhhccchhh
Confidence            3569999998754221 1122356899999999999776  3343456789999999998754432 11111        


Q ss_pred             HhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChH
Q 020754          152 GKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDK  231 (322)
Q Consensus       152 ~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~  231 (322)
                      ...+++|+.|.++.+.+.  .  +. .   . ...+++|++|+|++|.++.  +..-+..+++|+.|+|++|....... 
T Consensus       179 ~~~l~~L~~L~L~~n~l~--~--lp-~---~-l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~p-  246 (328)
T 4fcg_A          179 HQGLVNLQSLRLEWTGIR--S--LP-A---S-IANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYP-  246 (328)
T ss_dssp             EEESTTCCEEEEEEECCC--C--CC-G---G-GGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCEEECTTCTTCCBCC-
T ss_pred             hccCCCCCEEECcCCCcC--c--ch-H---h-hcCCCCCCEEEccCCCCCc--CchhhccCCCCCEEECcCCcchhhhH-
Confidence            124789999998877553  1  11 1   1 2478899999999998763  22235678999999999986554222 


Q ss_pred             HHHhcCCCCeeeCC
Q 020754          232 FMKGNFPNLKVLGP  245 (322)
Q Consensus       232 ~l~~~~~~Lk~L~~  245 (322)
                      .....+++|++|.+
T Consensus       247 ~~~~~l~~L~~L~L  260 (328)
T 4fcg_A          247 PIFGGRAPLKRLIL  260 (328)
T ss_dssp             CCTTCCCCCCEEEC
T ss_pred             HHhcCCCCCCEEEC
Confidence            22356778888754

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.49  E-value=1.1e-07  Score=92.64  Aligned_cols=140  Identities=19%  Similarity=0.166  Sum_probs=99.2

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV  160 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~  160 (322)
                      ..|+.|.++++.-... .. ...+++|+.|+|++|.++....   ...+++|+.|+|++| .++.  +.. ...+++|+.
T Consensus        43 ~~L~~L~l~~n~i~~l-~~-l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N-~l~~--l~~-l~~l~~L~~  113 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSV-QG-IQYLPNVTKLFLNGNKLTDIKP---LTNLKNLGWLFLDEN-KIKD--LSS-LKDLKKLKS  113 (605)
T ss_dssp             TTCCCCBCTTCCCCCC-TT-GGGCTTCCEEECTTSCCCCCGG---GGGCTTCCEEECCSS-CCCC--CTT-STTCTTCCE
T ss_pred             CCCCEEECcCCCCCCC-hH-HccCCCCCEEEeeCCCCCCChh---hccCCCCCEEECcCC-CCCC--Chh-hccCCCCCE
Confidence            3477788876532111 12 3569999999999997664322   567899999999995 5544  222 346799999


Q ss_pred             eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCC
Q 020754          161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL  240 (322)
Q Consensus       161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~L  240 (322)
                      |.++.+.+.  +       +..+ ..+++|+.|+|++|.++..   ..+..+++|+.|+|++|.... ...  ...+++|
T Consensus       114 L~Ls~N~l~--~-------l~~l-~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L  177 (605)
T 1m9s_A          114 LSLEHNGIS--D-------INGL-VHLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKL  177 (605)
T ss_dssp             EECTTSCCC--C-------CGGG-GGCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCC-CGG--GTTCTTC
T ss_pred             EEecCCCCC--C-------Cccc-cCCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCC-chh--hccCCCC
Confidence            988766542  1       1123 4799999999999988764   345689999999999996443 222  6788999


Q ss_pred             eeeCC
Q 020754          241 KVLGP  245 (322)
Q Consensus       241 k~L~~  245 (322)
                      +.|.+
T Consensus       178 ~~L~L  182 (605)
T 1m9s_A          178 QNLYL  182 (605)
T ss_dssp             CEEEC
T ss_pred             CEEEC
Confidence            99975

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.49  E-value=4.1e-09  Score=87.77  Aligned_cols=146  Identities=18%  Similarity=0.145  Sum_probs=94.4

Q ss_pred             eeEEEecCCCC-hHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCccee
Q 020754           83 LRKLCVSGLHN-DMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL  161 (322)
Q Consensus        83 l~~L~l~~~~~-~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L  161 (322)
                      ++...+.+... -..+......+++|+.|+|++|.++.  +. ....+++|+.|++++| .++.  +......+++|+.|
T Consensus        25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L   98 (198)
T 1ds9_A           25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRN-LIKK--IENLDAVADTLEEL   98 (198)
T ss_dssp             CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEE
T ss_pred             hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCC-Cccc--ccchhhcCCcCCEE
Confidence            55566654321 11111133568899999999985544  22 2345699999999984 5552  23334456889999


Q ss_pred             eccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCC------h---HH
Q 020754          162 CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLD------D---KF  232 (322)
Q Consensus       162 ~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~------~---~~  232 (322)
                      .++.+.+.  +       +..+. .+++|++|+|++|.++.-.....+..+++|++|++++|......      .   ..
T Consensus        99 ~L~~N~l~--~-------l~~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~  168 (198)
T 1ds9_A           99 WISYNQIA--S-------LSGIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE  168 (198)
T ss_dssp             EEEEEECC--C-------HHHHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred             ECcCCcCC--c-------CCccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence            88776542  1       22343 67899999999999886544455668999999999998543210      1   12


Q ss_pred             HHhcCCCCeeeC
Q 020754          233 MKGNFPNLKVLG  244 (322)
Q Consensus       233 l~~~~~~Lk~L~  244 (322)
                      +...+++|++|.
T Consensus       169 ~~~~l~~L~~Ld  180 (198)
T 1ds9_A          169 VVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHCSSCSEEC
T ss_pred             HHHhCCCcEEEC
Confidence            367889999883

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.48  E-value=9.5e-09  Score=90.41  Aligned_cols=58  Identities=14%  Similarity=-0.036  Sum_probs=29.0

Q ss_pred             cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      .+++|++|+|++|.++.... ..+..+++|+.|++++|.... ........+++|++|.+
T Consensus       175 ~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l  232 (285)
T 1ozn_A          175 GLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRL  232 (285)
T ss_dssp             TCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEEC
T ss_pred             CccccCEEECCCCcccccCH-hHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEec
Confidence            45666666666665443211 122345666666666664322 22233345666666643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.48  E-value=9.9e-08  Score=84.99  Aligned_cols=115  Identities=16%  Similarity=0.076  Sum_probs=53.6

Q ss_pred             hCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCH-HHHHHH--HhcCCCcceeeccccccCCCCCCCCchH
Q 020754          103 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGA-PALEAI--GKHCKLLVVLCRNMHPLDTADKLSQDDE  179 (322)
Q Consensus       103 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~-~~l~~l--~~~c~~L~~L~l~~~~l~~~~~~~~~~~  179 (322)
                      .+++|+.|+|++|.++.... .....+++|++|+++++ .+.. .++...  ...+++|++|.++.+.+..     ....
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----l~~~  215 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSC-EQVRAFPALTSLDLSDN-PGLGERGLMAALCPHKFPAIQNLALRNTGMET-----PTGV  215 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCT-TSCCCCTTCCEEECCSC-TTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-----HHHH
T ss_pred             hccCCCEEEeeCCCcchhhH-HHhccCCCCCEEECCCC-CCccchhhhHHHhhhcCCCCCEEECCCCCCCc-----hHHH
Confidence            46667777776665432111 11234566667777663 3332 222211  1345666666554433210     0111


Q ss_pred             HHHHHhcCCCCCEEEecCcccCHHHHHHHHh--cCCCCCEEeecCCC
Q 020754          180 ANAIASTMPKLKRLEMAYHVISTEIVLKILS--SCALLEFLDLRGCW  224 (322)
Q Consensus       180 ~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~--~~~~L~~L~L~~c~  224 (322)
                      ...+...+++|++|+|++|.++......+..  .+++|++|+|++|.
T Consensus       216 ~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~  262 (310)
T 4glp_A          216 CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAG  262 (310)
T ss_dssp             HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSC
T ss_pred             HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCC
Confidence            2233345666666666666654421111111  12566666666664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.47  E-value=4.3e-08  Score=93.56  Aligned_cols=146  Identities=18%  Similarity=0.238  Sum_probs=70.6

Q ss_pred             CeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCH-HHHHHHHhcCCCcce
Q 020754           82 SLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGA-PALEAIGKHCKLLVV  160 (322)
Q Consensus        82 ~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~-~~l~~l~~~c~~L~~  160 (322)
                      .++.|+++++.-....  +...+++|+.|++++|.++......+ ..+++|+.|++++ +.++. ..+......+++|+.
T Consensus       303 ~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~-N~l~~l~~~~~~~~~l~~L~~  378 (520)
T 2z7x_B          303 NIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENC-GHLTELETLILQM-NQLKELSKIAEMTTQMKSLQQ  378 (520)
T ss_dssp             CCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTC-CCCSSCCEEECCS-SCCCBHHHHHHHHTTCTTCCE
T ss_pred             ceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhh-ccCCCCCEEEccC-CccCccccchHHHhhCCCCCE
Confidence            4777777654311100  00356677777777776654322222 4567777777776 35543 223333445677777


Q ss_pred             eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcC-CCCCEEeecCCCCcCCChHHHHhcCCC
Q 020754          161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSC-ALLEFLDLRGCWDVKLDDKFMKGNFPN  239 (322)
Q Consensus       161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~-~~L~~L~L~~c~~~~~~~~~l~~~~~~  239 (322)
                      |.++.+.+..       .........+++|++|+|++|.++...    .... ++|+.|++++|.... -...+. .+++
T Consensus       379 L~Ls~N~l~~-------~l~~~~~~~l~~L~~L~Ls~N~l~~~~----~~~l~~~L~~L~Ls~N~l~~-ip~~~~-~l~~  445 (520)
T 2z7x_B          379 LDISQNSVSY-------DEKKGDCSWTKSLLSLNMSSNILTDTI----FRCLPPRIKVLDLHSNKIKS-IPKQVV-KLEA  445 (520)
T ss_dssp             EECCSSCCBC-------CGGGCSCCCCTTCCEEECCSSCCCGGG----GGSCCTTCCEEECCSSCCCC-CCGGGG-GCTT
T ss_pred             EECCCCcCCc-------ccccchhccCccCCEEECcCCCCCcch----hhhhcccCCEEECCCCcccc-cchhhh-cCCC
Confidence            7665554321       000001123556666666666554321    1122 456666666553221 111222 5555


Q ss_pred             CeeeC
Q 020754          240 LKVLG  244 (322)
Q Consensus       240 Lk~L~  244 (322)
                      |++|.
T Consensus       446 L~~L~  450 (520)
T 2z7x_B          446 LQELN  450 (520)
T ss_dssp             CCEEE
T ss_pred             CCEEE
Confidence            55554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.47  E-value=7.2e-09  Score=90.57  Aligned_cols=83  Identities=17%  Similarity=0.078  Sum_probs=38.6

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV  160 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~  160 (322)
                      ..+++|++++..-..........+++|+.|+|++|.++.. ...+...+++|++|++++ +.++.-.. .....+++|+.
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~-n~l~~~~~-~~~~~l~~L~~  113 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL-PAGIFKELKNLETLWVTD-NKLQALPI-GVFDQLVNLAE  113 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC-CTTTTSSCTTCCEEECCS-SCCCCCCT-TTTTTCSSCCE
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee-ChhhhcCCCCCCEEECCC-CcCCcCCH-hHcccccCCCE
Confidence            3466777665431111111123456677777766644421 111223456666776666 34432111 11234566666


Q ss_pred             eecccc
Q 020754          161 LCRNMH  166 (322)
Q Consensus       161 L~l~~~  166 (322)
                      |.++.+
T Consensus       114 L~l~~n  119 (270)
T 2o6q_A          114 LRLDRN  119 (270)
T ss_dssp             EECCSS
T ss_pred             EECCCC
Confidence            665544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.47  E-value=3.1e-08  Score=80.82  Aligned_cols=132  Identities=12%  Similarity=0.143  Sum_probs=90.7

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV  159 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~  159 (322)
                      +..++.|+++++.-.. +..+....++|+.|+|++|.++..   .....+++|++|++++ +.++.-. ..+...+++|+
T Consensus        18 ~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~-N~l~~~~-~~~~~~l~~L~   91 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNN-NRICRIG-EGLDQALPDLT   91 (176)
T ss_dssp             TTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCS-SCCCEEC-SCHHHHCTTCC
T ss_pred             cCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCC-CcccccC-cchhhcCCCCC
Confidence            4568999998764221 233445566999999999987753   2335679999999998 5676421 22335689999


Q ss_pred             eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHH--HHHHHhcCCCCCEEeecCCC
Q 020754          160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEI--VLKILSSCALLEFLDLRGCW  224 (322)
Q Consensus       160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~--l~~i~~~~~~L~~L~L~~c~  224 (322)
                      .|.++.+.+.  ..    ..+..+ ..+|+|++|++++|.++...  -..++..+|+|+.|+++++.
T Consensus        92 ~L~L~~N~i~--~~----~~~~~l-~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           92 ELILTNNSLV--EL----GDLDPL-ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             EEECCSCCCC--CG----GGGGGG-GGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             EEECCCCcCC--cc----hhhHhh-hcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            9988766542  10    111233 37999999999999875421  12356789999999999875

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.45  E-value=1.2e-09  Score=97.84  Aligned_cols=125  Identities=17%  Similarity=0.149  Sum_probs=67.4

Q ss_pred             CCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH
Q 020754          104 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  183 (322)
Q Consensus       104 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l  183 (322)
                      +++|+.|.+++|.++...-. ....+++|++|++++ +.++......+...+++|+.|.++.+.+...         ...
T Consensus       119 ~~~L~~L~l~~N~l~~~~~~-~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~---------~~~  187 (317)
T 3o53_A          119 GQGKKNIYLANNKITMLRDL-DEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNFIYDV---------KGQ  187 (317)
T ss_dssp             CSSCEEEECCSSCCCSGGGB-CTGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSCCCEE---------ECC
T ss_pred             cCCCCEEECCCCCCCCccch-hhhccCCCCEEECCC-CCCCcccHHHHhhccCcCCEEECCCCcCccc---------ccc
Confidence            56788888888766542111 123457888888887 5666555555555677788887765543210         000


Q ss_pred             HhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeC
Q 020754          184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  244 (322)
Q Consensus       184 ~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~  244 (322)
                       ..+++|++|+|++|.++.-..  -+..+++|+.|+|++|.......  ....+++|+.|.
T Consensus       188 -~~l~~L~~L~Ls~N~l~~l~~--~~~~l~~L~~L~L~~N~l~~l~~--~~~~l~~L~~L~  243 (317)
T 3o53_A          188 -VVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIEK--ALRFSQNLEHFD  243 (317)
T ss_dssp             -CCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTSCCCEECT--TCCCCTTCCEEE
T ss_pred             -cccccCCEEECCCCcCCcchh--hhcccCcccEEECcCCcccchhh--HhhcCCCCCEEE
Confidence             135666666666665542111  13355666666666664322111  123445555554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.45  E-value=8.8e-09  Score=90.03  Aligned_cols=153  Identities=14%  Similarity=0.099  Sum_probs=99.6

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV  159 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~  159 (322)
                      ..+|+.|++++..-......+...+++|+.|.|++|.++.... .....+++|++|++++ +.++...... ...+++|+
T Consensus        60 l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~-n~l~~~~~~~-~~~l~~L~  136 (270)
T 2o6q_A           60 LTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI-GVFDQLVNLAELRLDR-NQLKSLPPRV-FDSLTKLT  136 (270)
T ss_dssp             CTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT-TTTTTCSSCCEEECCS-SCCCCCCTTT-TTTCTTCC
T ss_pred             CCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH-hHcccccCCCEEECCC-CccCeeCHHH-hCcCcCCC
Confidence            4579999997754222222223568899999999996653211 2335679999999998 4554322222 24679999


Q ss_pred             eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCC
Q 020754          160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN  239 (322)
Q Consensus       160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~  239 (322)
                      .|.++.+.+....       . .....+++|++|+|++|.++.... ..+..+++|++|+|++|.... -.......+++
T Consensus       137 ~L~Ls~n~l~~~~-------~-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~  206 (270)
T 2o6q_A          137 YLSLGYNELQSLP-------K-GVFDKLTSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQLKR-VPEGAFDSLEK  206 (270)
T ss_dssp             EEECCSSCCCCCC-------T-TTTTTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTT
T ss_pred             EEECCCCcCCccC-------H-hHccCCcccceeEecCCcCcEeCh-hHhccCCCcCEEECCCCcCCc-CCHHHhccccC
Confidence            9988766543111       1 112468999999999998654321 224578999999999985443 23334467888


Q ss_pred             CeeeCC
Q 020754          240 LKVLGP  245 (322)
Q Consensus       240 Lk~L~~  245 (322)
                      |+.|.+
T Consensus       207 L~~L~l  212 (270)
T 2o6q_A          207 LKMLQL  212 (270)
T ss_dssp             CCEEEC
T ss_pred             CCEEEe
Confidence            988865

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.44  E-value=8.6e-09  Score=96.62  Aligned_cols=135  Identities=16%  Similarity=0.049  Sum_probs=67.8

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV  160 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~  160 (322)
                      +++++|++++..-..........+++|+.|+|++|.++..........+++|++|+|++ +.++......+ ..+++|++
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~-~~l~~L~~  107 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY-NQFLQLETGAF-NGLANLEV  107 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT-CTTCEECTTTT-TTCTTCCE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC-CccCccChhhc-cCcccCCE
Confidence            44677777654321111111234667777777776443111111223457777777776 34443222222 34566777


Q ss_pred             eeccccccCCCCCCCCchHHHH-HHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020754          161 LCRNMHPLDTADKLSQDDEANA-IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  224 (322)
Q Consensus       161 L~l~~~~l~~~~~~~~~~~~~~-l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~  224 (322)
                      |.+..+.+       ....... ....+++|++|+|++|.++......++.++++|++|++++|.
T Consensus       108 L~L~~n~l-------~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~  165 (455)
T 3v47_A          108 LTLTQCNL-------DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK  165 (455)
T ss_dssp             EECTTSCC-------BTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred             EeCCCCCC-------CccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc
Confidence            76554433       1111111 123566777777777765543322334566777777777664

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.44  E-value=1.7e-06  Score=71.67  Aligned_cols=120  Identities=12%  Similarity=0.177  Sum_probs=89.9

Q ss_pred             HHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcC---CCcceeeccccccCCCCCCCCchHHHHHHh---cCCCCCE
Q 020754          119 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHC---KLLVVLCRNMHPLDTADKLSQDDEANAIAS---TMPKLKR  192 (322)
Q Consensus       119 ~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c---~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~---~~p~L~~  192 (322)
                      +..+..+...-+.|++|+|++++.+++.++.++++.+   ..|+.|.|.       ++.+.+.++.+|+.   .-+.|++
T Consensus        30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~-------~n~igd~ga~alA~aL~~N~tL~~  102 (197)
T 1pgv_A           30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLA-------NTAISDSEARGLIELIETSPSLRV  102 (197)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECT-------TSCCBHHHHTTHHHHHHHCSSCCE
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEcc-------CCCCChHHHHHHHHHHhcCCccCe
Confidence            4567777777799999999985599999988887754   568888654       44556677766653   4578999


Q ss_pred             EEecCcccCHHHHHHHHhcC---CCCCEEeecCCCC--cCCCh----HHHHhcCCCCeeeCC
Q 020754          193 LEMAYHVISTEIVLKILSSC---ALLEFLDLRGCWD--VKLDD----KFMKGNFPNLKVLGP  245 (322)
Q Consensus       193 L~L~~~~i~~~~l~~i~~~~---~~L~~L~L~~c~~--~~~~~----~~l~~~~~~Lk~L~~  245 (322)
                      |+|+.|.|++.++.+|+..+   +.|++|+|+++.+  ++..+    ...++..+.|+.|..
T Consensus       103 L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l  164 (197)
T 1pgv_A          103 LNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGI  164 (197)
T ss_dssp             EECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             EecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEec
Confidence            99999999999999999866   5799999987643  32122    123567788888854

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.43  E-value=4.3e-08  Score=88.95  Aligned_cols=58  Identities=24%  Similarity=0.205  Sum_probs=26.4

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccC
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSY  139 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~  139 (322)
                      .+++.|++++..-..........+++|+.|+|++|.++... ......+++|++|++++
T Consensus        76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~  133 (353)
T 2z80_A           76 VNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSLTFLNLLG  133 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC-HHHHTTCTTCSEEECTT
T ss_pred             CCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC-HhHhCCCccCCEEECCC
Confidence            45666666553211111111233556666666666444211 11223456666666665

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.41  E-value=2.4e-07  Score=87.34  Aligned_cols=78  Identities=19%  Similarity=0.128  Sum_probs=37.6

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV  159 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~  159 (322)
                      ...++.|+++++.-.. +.. ...+++|+.|++.+|.++....   ...+++|+.|++++| .++....   ...+++|+
T Consensus       220 l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n-~l~~~~~---~~~l~~L~  290 (466)
T 1o6v_A          220 LTNLDELSLNGNQLKD-IGT-LASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGAN-QISNISP---LAGLTALT  290 (466)
T ss_dssp             CTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECCSSCCCCCGG---GTTCTTCSEEECCSS-CCCCCGG---GTTCTTCS
T ss_pred             cCCCCEEECCCCCccc-chh-hhcCCCCCEEECCCCccccchh---hhcCCCCCEEECCCC-ccCcccc---ccCCCccC
Confidence            3457777776543111 011 2346666666666664443211   344566666666653 3332111   23455566


Q ss_pred             eeecccc
Q 020754          160 VLCRNMH  166 (322)
Q Consensus       160 ~L~l~~~  166 (322)
                      .|.++.+
T Consensus       291 ~L~L~~n  297 (466)
T 1o6v_A          291 NLELNEN  297 (466)
T ss_dssp             EEECCSS
T ss_pred             eEEcCCC
Confidence            6655433

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.41  E-value=1.5e-06  Score=83.32  Aligned_cols=86  Identities=16%  Similarity=0.120  Sum_probs=48.3

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHH--HhcCCCccEEeccCCCCCCHHH-HHHHHhcCCC
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQI--AGRLSAVTFLDLSYCSKIGAPA-LEAIGKHCKL  157 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l--~~~~~~L~~L~l~~c~~i~~~~-l~~l~~~c~~  157 (322)
                      +.++.|++++..-...-..+...+++|+.|+|++|.++.......  ...+++|+.|++++| .++.-. .......+++
T Consensus       310 ~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~  388 (549)
T 2z81_A          310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKN  388 (549)
T ss_dssp             TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTT
T ss_pred             ccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCC
Confidence            456677776543222222333457777777777777776543321  245677777777773 454322 1233455677


Q ss_pred             cceeeccccc
Q 020754          158 LVVLCRNMHP  167 (322)
Q Consensus       158 L~~L~l~~~~  167 (322)
                      |+.|+++.+.
T Consensus       389 L~~L~Ls~N~  398 (549)
T 2z81_A          389 LTSLDISRNT  398 (549)
T ss_dssp             CCEEECTTCC
T ss_pred             CCEEECCCCC
Confidence            7777765553

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.41  E-value=9.9e-08  Score=83.82  Aligned_cols=48  Identities=23%  Similarity=0.296  Sum_probs=43.7

Q ss_pred             CCCcccCCHHHHHHHHccCChHHHh-hhhhhhhHHHHHHhcCCCceeeec
Q 020754            7 FRHWDELIPDALGLIFRNLSLQEVL-TVIPGVCKSWRRAVIGPYCWQEID   55 (322)
Q Consensus         7 ~~~w~~LP~eiL~~IF~~L~~~~~l-~~~~~VCk~W~~~~~~~~lw~~i~   55 (322)
                      ......||+|+|..||.+|+.++++ + |++|||+|+.++.++.+|++.-
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r-~~~VCk~Wr~l~~~~~~w~~~~   96 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQA-CRLVCLRWKELVDGAPLWLLKC   96 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHT-GGGTCHHHHHHHTSHHHHHHHH
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHH-HHHHhHHHHHHhcChHHHHHHh
Confidence            4577899999999999999999999 7 8999999999999999998653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.40  E-value=2.7e-08  Score=99.76  Aligned_cols=157  Identities=16%  Similarity=0.154  Sum_probs=78.2

Q ss_pred             CCeeEEEecCCCChHHHHH--HHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHH--HHhcCC
Q 020754           81 GSLRKLCVSGLHNDMMFSL--IAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEA--IGKHCK  156 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~--l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~--l~~~c~  156 (322)
                      .+|++|+++++.-...+..  ...++++|++|+|++|.++......+..++++|++|++++ +.++......  ....++
T Consensus       100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~l~  178 (768)
T 3rgz_A          100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA-NSISGANVVGWVLSDGCG  178 (768)
T ss_dssp             TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS-SCCEEETHHHHHHTTCCT
T ss_pred             CCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC-CccCCcCChhhhhhccCC
Confidence            4577778776531111111  2345788888888887443221112224567888888887 4555433322  245677


Q ss_pred             CcceeeccccccC---------------CCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeec
Q 020754          157 LLVVLCRNMHPLD---------------TADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLR  221 (322)
Q Consensus       157 ~L~~L~l~~~~l~---------------~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~  221 (322)
                      +|++|.+..+.+.               +.++.+... ... ...+++|++|+|++|.++.... ..+..+++|++|+++
T Consensus       179 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~-l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~Ls  255 (768)
T 3rgz_A          179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTG-IPF-LGDCSALQHLDISGNKLSGDFS-RAISTCTELKLLNIS  255 (768)
T ss_dssp             TCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSC-CCB-CTTCCSCCEEECCSSCCCSCHH-HHTTTCSSCCEEECC
T ss_pred             CCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCC-Ccc-cccCCCCCEEECcCCcCCCccc-HHHhcCCCCCEEECC
Confidence            7777776544331               111111110 001 2245666666666665543222 223456666666666


Q ss_pred             CCCCcCCChHHHHhcCCCCeeeC
Q 020754          222 GCWDVKLDDKFMKGNFPNLKVLG  244 (322)
Q Consensus       222 ~c~~~~~~~~~l~~~~~~Lk~L~  244 (322)
                      +|........   ..+++|++|.
T Consensus       256 ~n~l~~~~~~---~~l~~L~~L~  275 (768)
T 3rgz_A          256 SNQFVGPIPP---LPLKSLQYLS  275 (768)
T ss_dssp             SSCCEESCCC---CCCTTCCEEE
T ss_pred             CCcccCccCc---cccCCCCEEE
Confidence            6643211111   1455666654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.40  E-value=1.2e-08  Score=90.29  Aligned_cols=38  Identities=24%  Similarity=0.266  Sum_probs=18.2

Q ss_pred             cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020754          186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  224 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~  224 (322)
                      .+++|+.|+|++|.++.- ...++..+++|+.|+|++|.
T Consensus       146 ~l~~L~~L~L~~N~l~~l-~~~~~~~l~~L~~L~L~~N~  183 (290)
T 1p9a_G          146 PTPKLEKLSLANNNLTEL-PAGLLNGLENLDTLLLQENS  183 (290)
T ss_dssp             TCTTCCEEECTTSCCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred             cccCCCEEECCCCcCCcc-CHHHhcCcCCCCEEECCCCc
Confidence            455555555555554321 11122345556666665554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.39  E-value=5.8e-07  Score=84.63  Aligned_cols=35  Identities=20%  Similarity=0.181  Sum_probs=16.2

Q ss_pred             cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCC
Q 020754          186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC  223 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c  223 (322)
                      .+++|+.|+|++|.++....   +..+++|+.|++++|
T Consensus       285 ~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~L~~n  319 (466)
T 1o6v_A          285 GLTALTNLELNENQLEDISP---ISNLKNLTYLTLYFN  319 (466)
T ss_dssp             TCTTCSEEECCSSCCSCCGG---GGGCTTCSEEECCSS
T ss_pred             CCCccCeEEcCCCcccCchh---hcCCCCCCEEECcCC
Confidence            44555555555554432111   234455555555554

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.39  E-value=1e-08  Score=90.13  Aligned_cols=38  Identities=18%  Similarity=0.079  Sum_probs=17.7

Q ss_pred             cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020754          186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  224 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~  224 (322)
                      .+++|++|+|++|.++.... ..+..+++|+.|++++|.
T Consensus       151 ~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~  188 (285)
T 1ozn_A          151 DLGNLTHLFLHGNRISSVPE-RAFRGLHSLDRLLLHQNR  188 (285)
T ss_dssp             TCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSC
T ss_pred             cCCCccEEECCCCcccccCH-HHhcCccccCEEECCCCc
Confidence            45555555555554432110 112345555555555553

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.37  E-value=4.7e-09  Score=93.28  Aligned_cols=154  Identities=19%  Similarity=0.098  Sum_probs=84.3

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV  159 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~  159 (322)
                      ...|+.|++++..-..... ....+++|+.|++++|.++..........+++|++|+++++ .++.... .....+++|+
T Consensus        77 ~~~L~~L~Ls~n~i~~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~  153 (306)
T 2z66_A           77 TTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFN-GIFNGLSSLE  153 (306)
T ss_dssp             CSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEECST-TTTTTCTTCC
T ss_pred             ccccCEEECCCCccccChh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCccch-hhcccCcCCC
Confidence            4668888887753111000 12347888888888875443221123345688888888874 4432211 1223567888


Q ss_pred             eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCC
Q 020754          160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN  239 (322)
Q Consensus       160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~  239 (322)
                      .|.+..+.+.-       .........+++|++|+|++|.++.... ..+..+++|++|+|++|..... .......+++
T Consensus       154 ~L~l~~n~l~~-------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~  224 (306)
T 2z66_A          154 VLKMAGNSFQE-------NFLPDIFTELRNLTFLDLSQCQLEQLSP-TAFNSLSSLQVLNMSHNNFFSL-DTFPYKCLNS  224 (306)
T ss_dssp             EEECTTCEEGG-------GEECSCCTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTSCCSBC-CSGGGTTCTT
T ss_pred             EEECCCCcccc-------ccchhHHhhCcCCCEEECCCCCcCCcCH-HHhcCCCCCCEEECCCCccCcc-ChhhccCccc
Confidence            88776554321       0011112356777777777776554211 2234567777777777753332 2222356677


Q ss_pred             CeeeCC
Q 020754          240 LKVLGP  245 (322)
Q Consensus       240 Lk~L~~  245 (322)
                      |++|.+
T Consensus       225 L~~L~L  230 (306)
T 2z66_A          225 LQVLDY  230 (306)
T ss_dssp             CCEEEC
T ss_pred             CCEeEC
Confidence            777754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.35  E-value=6.9e-08  Score=90.41  Aligned_cols=131  Identities=16%  Similarity=0.150  Sum_probs=90.5

Q ss_pred             CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHH
Q 020754          105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  184 (322)
Q Consensus       105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~  184 (322)
                      ++|+.|+|++|.++.... .....+++|++|+++++ .++..........+++|++|.++.+.+.       ......+ 
T Consensus        30 ~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n-~~~~~i~~~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~-   99 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNE-TSFSRLQDLQFLKVEQQ-TPGLVIRNNTFRGLSSLIILKLDYNQFL-------QLETGAF-   99 (455)
T ss_dssp             TTCCEEECCSSCCCEECT-TTTSSCTTCCEEECCCC-STTCEECTTTTTTCTTCCEEECTTCTTC-------EECTTTT-
T ss_pred             CccCEEEecCCccCcCCh-hHhccCccccEEECcCC-cccceECcccccccccCCEEeCCCCccC-------ccChhhc-
Confidence            689999999997764322 22356899999999995 4432211222346799999988766542       1111223 


Q ss_pred             hcCCCCCEEEecCcccCHHHHHH-HHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          185 STMPKLKRLEMAYHVISTEIVLK-ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       185 ~~~p~L~~L~L~~~~i~~~~l~~-i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      ..+++|++|+|++|.++...+.. .+..+++|++|+|++|.........+...+++|++|.+
T Consensus       100 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  161 (455)
T 3v47_A          100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL  161 (455)
T ss_dssp             TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred             cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence            37899999999999987644332 25578999999999997554333444678899999975

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.34  E-value=1.6e-08  Score=94.70  Aligned_cols=58  Identities=12%  Similarity=-0.047  Sum_probs=26.6

Q ss_pred             cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      .+++|++|+|++|.++.... ..+..+++|+.|+|++|.... ........+++|+.|.+
T Consensus       229 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L  286 (440)
T 3zyj_A          229 GLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEINLAHNNLTL-LPHDLFTPLHHLERIHL  286 (440)
T ss_dssp             TCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEECTTSCCCC-CCTTTTSSCTTCCEEEC
T ss_pred             cCccCCEEECCCCceeEECh-hhhcCCCCCCEEECCCCCCCc-cChhHhccccCCCEEEc
Confidence            34455555555544332211 112345666666666664322 22223345566666653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.34  E-value=1.7e-08  Score=90.32  Aligned_cols=57  Identities=19%  Similarity=0.205  Sum_probs=32.6

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccC
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSY  139 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~  139 (322)
                      .+.++.|++++..-..........+++|+.|+|++|.++...  . ...+++|++|++++
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~   89 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNN   89 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCS
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcC
Confidence            445777877765422222222345777777777777554211  1 34557777777776

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.34  E-value=4.9e-08  Score=81.69  Aligned_cols=129  Identities=14%  Similarity=0.083  Sum_probs=87.0

Q ss_pred             CCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH
Q 020754          104 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  183 (322)
Q Consensus       104 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l  183 (322)
                      .++|+.|+|+++.++.. .......+++|++|++++ +.++.- .......+++|++|.++.+.+.  +.  .    ...
T Consensus        27 ~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~-n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~--~~--~----~~~   95 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGG-NKLQSL-PNGVFNKLTSLTYLNLSTNQLQ--SL--P----NGV   95 (208)
T ss_dssp             CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSSCCC--CC--C----TTT
T ss_pred             CCCCcEEEcCCCccCcC-ChhhhcccccCcEEECCC-CccCcc-ChhhcCCCCCcCEEECCCCcCC--cc--C----HhH
Confidence            46899999999976632 122335679999999998 566532 1222356799999988766543  11  0    111


Q ss_pred             HhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       184 ~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      ...+++|++|+|++|.++... ...+..+++|++|+|++|.... ........+++|++|.+
T Consensus        96 ~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l  155 (208)
T 2o6s_A           96 FDKLTQLKELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWL  155 (208)
T ss_dssp             TTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEEC
T ss_pred             hcCccCCCEEEcCCCcCcccC-HhHhccCCcCCEEECCCCccce-eCHHHhccCCCccEEEe
Confidence            247899999999999876321 1234578999999999985443 22334567888988865

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.33  E-value=2e-08  Score=94.42  Aligned_cols=58  Identities=17%  Similarity=-0.036  Sum_probs=26.1

Q ss_pred             cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      .+++|+.|+|++|.++.... ..+.++++|+.|+|++|...+ -.......+++|+.|.+
T Consensus       240 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L  297 (452)
T 3zyi_A          240 GLSSLKKLWVMNSQVSLIER-NAFDGLASLVELNLAHNNLSS-LPHDLFTPLRYLVELHL  297 (452)
T ss_dssp             TCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSC-CCTTSSTTCTTCCEEEC
T ss_pred             CccCCCEEEeCCCcCceECH-HHhcCCCCCCEEECCCCcCCc-cChHHhccccCCCEEEc
Confidence            34555555555554332111 112345666666666653222 12222345566666643

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.33  E-value=1.3e-08  Score=99.08  Aligned_cols=15  Identities=20%  Similarity=0.357  Sum_probs=7.8

Q ss_pred             CCCCCEEecCCCCCC
Q 020754          104 AGSLQTLRLPRSEMS  118 (322)
Q Consensus       104 ~~~L~~L~L~~~~i~  118 (322)
                      +++|+.|++.+|.++
T Consensus       300 l~~L~~L~l~~n~l~  314 (606)
T 3t6q_A          300 LSTLKKLVLSANKFE  314 (606)
T ss_dssp             CTTCCEEECTTCCCS
T ss_pred             cccCCEEECccCCcC
Confidence            455555555555443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.30  E-value=6.8e-08  Score=82.31  Aligned_cols=131  Identities=15%  Similarity=0.099  Sum_probs=71.8

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV  160 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~  160 (322)
                      ..++.|++++..-..........+++|+.|.|++|.++... ......+++|+.|+|++ +.++.-. ......+++|+.
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~-N~l~~l~-~~~~~~l~~L~~  116 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGT-NQLTVLP-SAVFDRLVHLKE  116 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCS-SCCCCCC-TTTTTTCTTCCE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCC-CcCCccC-hhHhCcchhhCe
Confidence            45777877664322111122245677888888877553211 11224567788888877 4554211 112235677777


Q ss_pred             eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020754          161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  224 (322)
Q Consensus       161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~  224 (322)
                      |.++.+.+.  .  +. .   .+ ..+++|++|+|++|.++.-.. ..+..+++|+.|+|+++.
T Consensus       117 L~Ls~N~l~--~--lp-~---~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          117 LFMCCNKLT--E--LP-R---GI-ERLTHLTHLALDQNQLKSIPH-GAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             EECCSSCCC--S--CC-T---TG-GGCTTCSEEECCSSCCCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred             EeccCCccc--c--cC-c---cc-ccCCCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCC
Confidence            776655442  1  10 1   11 367777777777776553211 234466777777777765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.30  E-value=9.8e-09  Score=91.82  Aligned_cols=53  Identities=15%  Similarity=0.026  Sum_probs=24.7

Q ss_pred             CCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          190 LKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       190 L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      |+.|+|++|.++.. ....+..+++|+.|+|++|.... .... ...+++|++|.+
T Consensus       199 L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~-~~~~-~~~l~~L~~L~L  251 (313)
T 1ogq_A          199 LAFVDLSRNMLEGD-ASVLFGSDKNTQKIHLAKNSLAF-DLGK-VGLSKNLNGLDL  251 (313)
T ss_dssp             CSEEECCSSEEEEC-CGGGCCTTSCCSEEECCSSEECC-BGGG-CCCCTTCCEEEC
T ss_pred             ccEEECcCCcccCc-CCHHHhcCCCCCEEECCCCceee-ecCc-ccccCCCCEEEC
Confidence            55555555543321 11223355666666666664321 1111 334556666543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.30  E-value=3.4e-08  Score=85.27  Aligned_cols=135  Identities=15%  Similarity=0.099  Sum_probs=90.1

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV  159 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~  159 (322)
                      ...|+.|++++..-..........+++|+.|+|++|.++... ......+++|++|+|++ +.++.-. ......+++|+
T Consensus        58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~-N~l~~~~-~~~~~~l~~L~  134 (251)
T 3m19_A           58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP-LGVFDHLTQLDKLYLGG-NQLKSLP-SGVFDRLTKLK  134 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCS-SCCCCCC-TTTTTTCTTCC
T ss_pred             cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccC-hhHhcccCCCCEEEcCC-CcCCCcC-hhHhccCCccc
Confidence            467999999875422222222346889999999999776321 12335679999999998 5665321 12234679999


Q ss_pred             eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCc
Q 020754          160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  226 (322)
Q Consensus       160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~  226 (322)
                      .|.++.+.+.  +.  .   ...+ ..+++|++|+|++|.++.... ..+..+++|+.|+|++|...
T Consensus       135 ~L~Ls~N~l~--~~--~---~~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          135 ELRLNTNQLQ--SI--P---AGAF-DKLTNLQTLSLSTNQLQSVPH-GAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             EEECCSSCCC--CC--C---TTTT-TTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSCCBC
T ss_pred             EEECcCCcCC--cc--C---HHHc-CcCcCCCEEECCCCcCCccCH-HHHhCCCCCCEEEeeCCcee
Confidence            9998766543  11  0   1112 368999999999998763221 23457899999999998643

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.29  E-value=4e-08  Score=92.78  Aligned_cols=130  Identities=23%  Similarity=0.077  Sum_probs=61.3

Q ss_pred             hCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHH
Q 020754          103 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  182 (322)
Q Consensus       103 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~  182 (322)
                      .+++|+.|+|++|.++.... .....+++|++|+|++ +.++...... ...+++|+.|.+..+.+..       ....+
T Consensus        78 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~-n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~-------~~~~~  147 (477)
T 2id5_A           78 NLFNLRTLGLRSNRLKLIPL-GVFTGLSNLTKLDISE-NKIVILLDYM-FQDLYNLKSLEVGDNDLVY-------ISHRA  147 (477)
T ss_dssp             TCTTCCEEECCSSCCCSCCT-TSSTTCTTCCEEECTT-SCCCEECTTT-TTTCTTCCEEEECCTTCCE-------ECTTS
T ss_pred             CCccCCEEECCCCcCCccCc-ccccCCCCCCEEECCC-CccccCChhH-ccccccCCEEECCCCccce-------eChhh
Confidence            35555555555554332110 1112345555555555 3333211111 1344556666554333211       11111


Q ss_pred             HHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          183 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       183 l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      + ..+++|++|+|++|.++... ...+..+++|+.|+|++|..... .......+++|++|.+
T Consensus       148 ~-~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~l  207 (477)
T 2id5_A          148 F-SGLNSLEQLTLEKCNLTSIP-TEALSHLHGLIVLRLRHLNINAI-RDYSFKRLYRLKVLEI  207 (477)
T ss_dssp             S-TTCTTCCEEEEESCCCSSCC-HHHHTTCTTCCEEEEESCCCCEE-CTTCSCSCTTCCEEEE
T ss_pred             c-cCCCCCCEEECCCCcCcccC-hhHhcccCCCcEEeCCCCcCcEe-ChhhcccCcccceeeC
Confidence            2 25677777777777654322 12345677777777777643321 1222346667777653

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.28  E-value=2.6e-08  Score=84.90  Aligned_cols=127  Identities=17%  Similarity=0.101  Sum_probs=87.1

Q ss_pred             CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHH
Q 020754          105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  184 (322)
Q Consensus       105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~  184 (322)
                      ++|+.|.|++|.++... ......+++|++|+|++ +.++.-. ......+++|+.|.++.+.+..-.        ....
T Consensus        40 ~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~-N~l~~i~-~~~~~~l~~L~~L~Ls~N~l~~l~--------~~~~  108 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLE-PGVFDSLINLKELYLGS-NQLGALP-VGVFDSLTQLTVLDLGTNQLTVLP--------SAVF  108 (229)
T ss_dssp             TTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCS-SCCCCCC-TTTTTTCTTCCEEECCSSCCCCCC--------TTTT
T ss_pred             CCCCEEEcCCCccCccC-HHHhhCccCCcEEECCC-CCCCCcC-hhhcccCCCcCEEECCCCcCCccC--------hhHh
Confidence            79999999999766421 12235679999999998 5664321 122356799999998776553111        1122


Q ss_pred             hcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          185 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       185 ~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      ..+++|++|+|++|.++.  +..-+..+++|++|+|++|...... ......+++|++|.+
T Consensus       109 ~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l  166 (229)
T 3e6j_A          109 DRLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLKSIP-HGAFDRLSSLTHAYL  166 (229)
T ss_dssp             TTCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEEC
T ss_pred             CcchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCcCCccC-HHHHhCCCCCCEEEe
Confidence            378999999999998772  2233468899999999998644322 234567888988855

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.27  E-value=7.7e-09  Score=99.63  Aligned_cols=58  Identities=24%  Similarity=0.309  Sum_probs=27.2

Q ss_pred             cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeC
Q 020754          186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  244 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~  244 (322)
                      .+++|++|+|++|.+++..+...+..+++|+.|+|++|.... ........+++|++|.
T Consensus       443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~  500 (570)
T 2z63_A          443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLN  500 (570)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEE
T ss_pred             cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCcccc-CChhhhhcccCCCEEe
Confidence            455666666666554432222233455666666666653221 1111223455555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.26  E-value=5.7e-07  Score=78.28  Aligned_cols=120  Identities=23%  Similarity=0.143  Sum_probs=87.3

Q ss_pred             HhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHH
Q 020754          102 ENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN  181 (322)
Q Consensus       102 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~  181 (322)
                      ..+++|+.|++.+|.++..  . -...+++|+.|++++ +.++.-..   ...+++|+.|.++.+.+.-  .       .
T Consensus        38 ~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~L~~-N~i~~~~~---l~~l~~L~~L~L~~N~l~~--l-------~  101 (263)
T 1xeu_A           38 KELSGVQNFNGDNSNIQSL--A-GMQFFTNLKELHLSH-NQISDLSP---LKDLTKLEELSVNRNRLKN--L-------N  101 (263)
T ss_dssp             HHHTTCSEEECTTSCCCCC--T-TGGGCTTCCEEECCS-SCCCCCGG---GTTCSSCCEEECCSSCCSC--C-------T
T ss_pred             hhcCcCcEEECcCCCcccc--h-HHhhCCCCCEEECCC-CccCCChh---hccCCCCCEEECCCCccCC--c-------C
Confidence            3578999999999977642  2 235689999999998 46654332   5678999999988775531  1       1


Q ss_pred             HHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          182 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       182 ~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      .+. . ++|++|+|++|.++.-.   -+..+++|+.|++++|.... -.  ....+++|++|.+
T Consensus       102 ~~~-~-~~L~~L~L~~N~l~~~~---~l~~l~~L~~L~Ls~N~i~~-~~--~l~~l~~L~~L~L  157 (263)
T 1xeu_A          102 GIP-S-ACLSRLFLDNNELRDTD---SLIHLKNLEILSIRNNKLKS-IV--MLGFLSKLEVLDL  157 (263)
T ss_dssp             TCC-C-SSCCEEECCSSCCSBSG---GGTTCTTCCEEECTTSCCCB-CG--GGGGCTTCCEEEC
T ss_pred             ccc-c-CcccEEEccCCccCCCh---hhcCcccccEEECCCCcCCC-Ch--HHccCCCCCEEEC
Confidence            112 2 89999999999887632   25689999999999996443 22  3567899999965

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.26  E-value=2.9e-08  Score=90.05  Aligned_cols=85  Identities=19%  Similarity=0.131  Sum_probs=53.4

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV  160 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~  160 (322)
                      +.+++|++++..-..........+++|+.|+|++|.++.... .....+++|++|++++ +.++.-.. .....+++|++
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~-n~l~~~~~-~~~~~l~~L~~  128 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE-DSFSSLGSLEHLDLSY-NYLSNLSS-SWFKPLSSLTF  128 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCS-SCCSSCCH-HHHTTCTTCSE
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCH-hhcCCCCCCCEEECCC-CcCCcCCH-hHhCCCccCCE
Confidence            468899987754221111123468899999999887664211 1234578999999998 46654222 22356788999


Q ss_pred             eecccccc
Q 020754          161 LCRNMHPL  168 (322)
Q Consensus       161 L~l~~~~l  168 (322)
                      |.++.+.+
T Consensus       129 L~L~~n~l  136 (353)
T 2z80_A          129 LNLLGNPY  136 (353)
T ss_dssp             EECTTCCC
T ss_pred             EECCCCCC
Confidence            98876544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.25  E-value=1.8e-07  Score=90.54  Aligned_cols=123  Identities=21%  Similarity=0.360  Sum_probs=83.1

Q ss_pred             CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHH
Q 020754          105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  184 (322)
Q Consensus       105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~  184 (322)
                      .+|+.|+|++|.++.  +.. ...+++|+.|+|++ +.++  .+..-...+++|+.|.++.+.+.  +.       ..+ 
T Consensus       441 ~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~-N~l~--~lp~~~~~l~~L~~L~Ls~N~l~--~l-------p~l-  504 (567)
T 1dce_A          441 ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSH-NRLR--ALPPALAALRCLEVLQASDNALE--NV-------DGV-  504 (567)
T ss_dssp             TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCS-SCCC--CCCGGGGGCTTCCEEECCSSCCC--CC-------GGG-
T ss_pred             cCceEEEecCCCCCC--CcC-ccccccCcEeecCc-cccc--ccchhhhcCCCCCEEECCCCCCC--CC-------ccc-
Confidence            368899999886654  233 45678999999998 5666  22223346788999988766542  21       123 


Q ss_pred             hcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCCh--HHHHhcCCCCeee
Q 020754          185 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVL  243 (322)
Q Consensus       185 ~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~--~~l~~~~~~Lk~L  243 (322)
                      ..+++|+.|+|++|.++.......+..+++|+.|+|++|.......  ..+...+|+|++|
T Consensus       505 ~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L  565 (567)
T 1dce_A          505 ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  565 (567)
T ss_dssp             TTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCcc
Confidence            3789999999999987654212334578999999999986443222  3456678888887

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.24  E-value=5.3e-08  Score=91.94  Aligned_cols=129  Identities=18%  Similarity=0.057  Sum_probs=56.9

Q ss_pred             hCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHH
Q 020754          103 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  182 (322)
Q Consensus       103 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~  182 (322)
                      .+++|+.|+|++|.++..... ....+++|++|+|++ +.++.-.. .....+++|+.|.++.+.+..       .....
T Consensus        54 ~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~-n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~-------~~~~~  123 (477)
T 2id5_A           54 SFPHLEELELNENIVSAVEPG-AFNNLFNLRTLGLRS-NRLKLIPL-GVFTGLSNLTKLDISENKIVI-------LLDYM  123 (477)
T ss_dssp             TCTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCS-SCCCSCCT-TSSTTCTTCCEEECTTSCCCE-------ECTTT
T ss_pred             CCCCCCEEECCCCccCEeChh-hhhCCccCCEEECCC-CcCCccCc-ccccCCCCCCEEECCCCcccc-------CChhH
Confidence            455666666666544432111 123446666666665 33332111 111235566666554433211       00011


Q ss_pred             HHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeC
Q 020754          183 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  244 (322)
Q Consensus       183 l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~  244 (322)
                      + ..+++|++|+|++|.++..... .+.++++|+.|+|++|.... ........+++|+.|.
T Consensus       124 ~-~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~  182 (477)
T 2id5_A          124 F-QDLYNLKSLEVGDNDLVYISHR-AFSGLNSLEQLTLEKCNLTS-IPTEALSHLHGLIVLR  182 (477)
T ss_dssp             T-TTCTTCCEEEECCTTCCEECTT-SSTTCTTCCEEEEESCCCSS-CCHHHHTTCTTCCEEE
T ss_pred             c-cccccCCEEECCCCccceeChh-hccCCCCCCEEECCCCcCcc-cChhHhcccCCCcEEe
Confidence            1 2456666666666554322111 12345666666666653222 2223334555666554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.24  E-value=4.8e-08  Score=91.72  Aligned_cols=58  Identities=14%  Similarity=0.031  Sum_probs=25.4

Q ss_pred             cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      .+++|++|+|++|.++.... ..+.++++|+.|+|++|..... .......+++|+.|.+
T Consensus       216 ~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L  273 (452)
T 3zyi_A          216 PLVGLEELEMSGNHFPEIRP-GSFHGLSSLKKLWVMNSQVSLI-ERNAFDGLASLVELNL  273 (452)
T ss_dssp             TCTTCCEEECTTSCCSEECG-GGGTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEEC
T ss_pred             ccccccEEECcCCcCcccCc-ccccCccCCCEEEeCCCcCceE-CHHHhcCCCCCCEEEC
Confidence            34455555555554332111 1223455555555555532211 1122345566666643

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.22  E-value=5.1e-08  Score=91.27  Aligned_cols=58  Identities=14%  Similarity=0.013  Sum_probs=25.4

Q ss_pred             cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      .+++|++|+|++|.++.... ..+.++++|+.|+|++|.... ........+++|++|.+
T Consensus       205 ~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L  262 (440)
T 3zyj_A          205 PLIKLDELDLSGNHLSAIRP-GSFQGLMHLQKLWMIQSQIQV-IERNAFDNLQSLVEINL  262 (440)
T ss_dssp             TCSSCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTCCCCE-ECTTSSTTCTTCCEEEC
T ss_pred             CCcccCEEECCCCccCccCh-hhhccCccCCEEECCCCceeE-EChhhhcCCCCCCEEEC
Confidence            34455555555554432111 122345555555555553221 11122345566666643

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.22  E-value=3.8e-08  Score=86.07  Aligned_cols=134  Identities=24%  Similarity=0.103  Sum_probs=75.3

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV  160 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~  160 (322)
                      ..++.|++++..-..........+++|+.|+|++|.++.... .....+++|++|++++ +.++......+ ..+++|+.
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~-n~l~~~~~~~~-~~l~~L~~  104 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTG-NPIQSLALGAF-SGLSSLQK  104 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTT-CCCCEECTTTT-TTCTTCCE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH-HHccCCcCCCEEECCC-CccCccChhhh-cCCccccE
Confidence            357788886643211111112357788888888876553211 1224567888888887 45543322222 34677888


Q ss_pred             eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCC
Q 020754          161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD  225 (322)
Q Consensus       161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~  225 (322)
                      |.+..+.+....       ... ...+++|++|+|++|.++...+...+..+++|++|++++|..
T Consensus       105 L~l~~n~l~~~~-------~~~-~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l  161 (276)
T 2z62_A          105 LVAVETNLASLE-------NFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  161 (276)
T ss_dssp             EECTTSCCCCST-------TCC-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             EECCCCCccccC-------chh-cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC
Confidence            877655432111       001 235777888888877765433333445677888888877753

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.22  E-value=1.5e-08  Score=90.10  Aligned_cols=154  Identities=16%  Similarity=0.101  Sum_probs=96.9

Q ss_pred             CCCeeEEEecCCCChHHHH-HHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCc
Q 020754           80 SGSLRKLCVSGLHNDMMFS-LIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLL  158 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~-~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L  158 (322)
                      ...|++|++++..-..... .....+++|+.|++++|.++... ......+++|++|++++ +.++...+......+++|
T Consensus       100 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L  177 (306)
T 2z66_A          100 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-NGIFNGLSSLEVLKMAG-NSFQENFLPDIFTELRNL  177 (306)
T ss_dssp             CTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS-TTTTTTCTTCCEEECTT-CEEGGGEECSCCTTCTTC
T ss_pred             CCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc-hhhcccCcCCCEEECCC-CccccccchhHHhhCcCC
Confidence            4568999997643111110 12346889999999998654321 12234579999999998 455543333334567899


Q ss_pred             ceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcC-
Q 020754          159 VVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNF-  237 (322)
Q Consensus       159 ~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~-  237 (322)
                      +.|.++.+.+.       ......+ ..+++|++|+|++|.++..... .+..+++|+.|+|++|.... ........+ 
T Consensus       178 ~~L~Ls~n~l~-------~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~  247 (306)
T 2z66_A          178 TFLDLSQCQLE-------QLSPTAF-NSLSSLQVLNMSHNNFFSLDTF-PYKCLNSLQVLDYSLNHIMT-SKKQELQHFP  247 (306)
T ss_dssp             CEEECTTSCCC-------EECTTTT-TTCTTCCEEECTTSCCSBCCSG-GGTTCTTCCEEECTTSCCCB-CSSSSCCCCC
T ss_pred             CEEECCCCCcC-------CcCHHHh-cCCCCCCEEECCCCccCccChh-hccCcccCCEeECCCCCCcc-cCHHHHHhhh
Confidence            99988766442       1111222 3689999999999987653221 24578999999999996443 222223344 


Q ss_pred             CCCeeeCC
Q 020754          238 PNLKVLGP  245 (322)
Q Consensus       238 ~~Lk~L~~  245 (322)
                      ++|++|.+
T Consensus       248 ~~L~~L~L  255 (306)
T 2z66_A          248 SSLAFLNL  255 (306)
T ss_dssp             TTCCEEEC
T ss_pred             ccCCEEEc
Confidence            47888854

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.21  E-value=2.5e-08  Score=96.91  Aligned_cols=162  Identities=21%  Similarity=0.191  Sum_probs=71.8

Q ss_pred             CCCeeEEEecCCCCh-HHHHHHHHhCCCCCEEecCCCCCCHHHH-HHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCC
Q 020754           80 SGSLRKLCVSGLHND-MMFSLIAENAGSLQTLRLPRSEMSDSIV-AQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL  157 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~-~~l~~l~~~~~~L~~L~L~~~~i~~~~l-~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~  157 (322)
                      .+.++.|+++++... .........+++|+.|++++|.++.... ......+++|++|++++| .++...... ...+++
T Consensus       324 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~  401 (606)
T 3t6q_A          324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN-EPLSLKTEA-FKECPQ  401 (606)
T ss_dssp             CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC-SCEEECTTT-TTTCTT
T ss_pred             cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC-cCCcCCHHH-hcCCcc
Confidence            356777777664311 1111112346677777777765543210 111234566666666663 332211111 123455


Q ss_pred             cceeeccccccC------------------CCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHH--HHHhcCCCCCE
Q 020754          158 LVVLCRNMHPLD------------------TADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL--KILSSCALLEF  217 (322)
Q Consensus       158 L~~L~l~~~~l~------------------~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~--~i~~~~~~L~~  217 (322)
                      |+.|.++.+.+.                  +.++.+.......+ ..+|+|++|+|++|.++...+.  ..+..+++|+.
T Consensus       402 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~  480 (606)
T 3t6q_A          402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF-DGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI  480 (606)
T ss_dssp             CSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT-TTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCE
T ss_pred             CCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH-hCCCCCCEEECCCCCCCccccccchhhccCCCccE
Confidence            666655433221                  11111111111111 2466666666666665432111  12345666666


Q ss_pred             EeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          218 LDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       218 L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      |++++|...... ......+++|++|.+
T Consensus       481 L~Ls~n~l~~~~-~~~~~~l~~L~~L~L  507 (606)
T 3t6q_A          481 LVLSFCDLSSID-QHAFTSLKMMNHVDL  507 (606)
T ss_dssp             EECTTSCCCEEC-TTTTTTCTTCCEEEC
T ss_pred             EECCCCccCccC-hhhhccccCCCEEEC
Confidence            666666433211 122345566666643

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.21  E-value=1.7e-08  Score=95.90  Aligned_cols=125  Identities=17%  Similarity=0.162  Sum_probs=68.5

Q ss_pred             CCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH
Q 020754          104 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  183 (322)
Q Consensus       104 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l  183 (322)
                      +++|+.|.|++|.++...-.. ...+++|+.|+|++ +.++......+...+++|+.|.++.+.+.-.         ...
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~-N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~---------~~~  187 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYNFIYDV---------KGQ  187 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTSCCCEE---------ECC
T ss_pred             cCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCC-CCCCCcChHHHhhhCCcccEEecCCCccccc---------ccc
Confidence            577888888887665432111 23467888888887 5666655555555677888887765543210         001


Q ss_pred             HhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeC
Q 020754          184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  244 (322)
Q Consensus       184 ~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~  244 (322)
                       ..+++|+.|+|++|.++....  -+..+++|+.|+|++|...+...  ....+++|+.|.
T Consensus       188 -~~l~~L~~L~Ls~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~lp~--~l~~l~~L~~L~  243 (487)
T 3oja_A          188 -VVFAKLKTLDLSSNKLAFMGP--EFQSAAGVTWISLRNNKLVLIEK--ALRFSQNLEHFD  243 (487)
T ss_dssp             -CCCTTCCEEECCSSCCCEECG--GGGGGTTCSEEECTTSCCCEECT--TCCCCTTCCEEE
T ss_pred             -ccCCCCCEEECCCCCCCCCCH--hHcCCCCccEEEecCCcCcccch--hhccCCCCCEEE
Confidence             135666666666665543111  13355666666666654332111  123445555554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.20  E-value=4.9e-08  Score=97.88  Aligned_cols=138  Identities=17%  Similarity=0.117  Sum_probs=73.6

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV  159 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~  159 (322)
                      ...|+.|+++++.-...+.. ...+++|+.|+|.+|.++..... ....+++|++|++++| .++.....   ..+++|+
T Consensus       199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~Ls~n-~l~~~~~~---~~l~~L~  272 (768)
T 3rgz_A          199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSR-AISTCTELKLLNISSN-QFVGPIPP---LPLKSLQ  272 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHH-HTTTCSSCCEEECCSS-CCEESCCC---CCCTTCC
T ss_pred             CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccH-HHhcCCCCCEEECCCC-cccCccCc---cccCCCC
Confidence            56788888876542211112 34678888888888877644333 3356788888888875 33211100   0455666


Q ss_pred             eeeccccccC------------------CCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeec
Q 020754          160 VLCRNMHPLD------------------TADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLR  221 (322)
Q Consensus       160 ~L~l~~~~l~------------------~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~  221 (322)
                      +|.+..+.+.                  +.++.+.......+ ..+++|++|+|++|.++.......+..+++|++|+++
T Consensus       273 ~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls  351 (768)
T 3rgz_A          273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF-GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS  351 (768)
T ss_dssp             EEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG-GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC
T ss_pred             EEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH-hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc
Confidence            6655443321                  11111100001112 3567777777777755422222234466777777777


Q ss_pred             CCC
Q 020754          222 GCW  224 (322)
Q Consensus       222 ~c~  224 (322)
                      +|.
T Consensus       352 ~n~  354 (768)
T 3rgz_A          352 FNE  354 (768)
T ss_dssp             SSE
T ss_pred             CCc
Confidence            764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.20  E-value=4.6e-08  Score=82.91  Aligned_cols=133  Identities=13%  Similarity=0.059  Sum_probs=72.6

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV  160 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~  160 (322)
                      ..++.|++++..-..........+++|+.|+|++|.++.... .....+++|++|+|++ +.++.- ...+...+++|+.
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~-N~l~~l-~~~~f~~l~~L~~  108 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYG-NKITEL-PKSLFEGLFSLQL  108 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT-TTTTTCSSCCEEECCS-SCCCCC-CTTTTTTCTTCCE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH-HHhhCCcCCCEEECCC-CcCCcc-CHhHccCCCCCCE
Confidence            357777776543111111112346778888888876653211 1224567888888887 455421 1122245677777


Q ss_pred             eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCC
Q 020754          161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD  225 (322)
Q Consensus       161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~  225 (322)
                      |.++.+.+....       ...+ ..+++|++|+|++|.++.... ..+..+++|+.|+|+++..
T Consensus       109 L~L~~N~l~~~~-------~~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          109 LLLNANKINCLR-------VDAF-QDLHNLNLLSLYDNKLQTIAK-GTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             EECCSSCCCCCC-------TTTT-TTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCE
T ss_pred             EECCCCCCCEeC-------HHHc-CCCCCCCEEECCCCcCCEECH-HHHhCCCCCCEEEeCCCCc
Confidence            777655442111       1112 256778888888776543221 1234567778888877753

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.19  E-value=1.4e-07  Score=91.09  Aligned_cols=129  Identities=14%  Similarity=0.170  Sum_probs=68.2

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCH-HHHHHHHhcCCCcc
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGA-PALEAIGKHCKLLV  159 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~-~~l~~l~~~c~~L~  159 (322)
                      ..++.|+++++.-....  +...+++|+.|++++|.++..... ....+++|+.|++++ +.++. ..+......+++|+
T Consensus       331 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~l~~L~  406 (562)
T 3a79_B          331 MNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQ-GCSTLKRLQTLILQR-NGLKNFFKVALMTKNMSSLE  406 (562)
T ss_dssp             CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTT-TCCSCSSCCEEECCS-SCCCBTTHHHHTTTTCTTCC
T ss_pred             CcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhh-hhcccCCCCEEECCC-CCcCCcccchhhhcCCCCCC
Confidence            45778887664311000  013567888888888766653222 224567888888887 45553 12233335667888


Q ss_pred             eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcC-CCCCEEeecCCC
Q 020754          160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSC-ALLEFLDLRGCW  224 (322)
Q Consensus       160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~-~~L~~L~L~~c~  224 (322)
                      .|.++.+.+.....       ......+++|++|+|++|.++..    +...+ ++|+.|+|++|.
T Consensus       407 ~L~l~~N~l~~~~~-------~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~~L~~L~L~~N~  461 (562)
T 3a79_B          407 TLDVSLNSLNSHAY-------DRTCAWAESILVLNLSSNMLTGS----VFRCLPPKVKVLDLHNNR  461 (562)
T ss_dssp             EEECTTSCCBSCCS-------SCCCCCCTTCCEEECCSSCCCGG----GGSSCCTTCSEEECCSSC
T ss_pred             EEECCCCcCCCccC-------hhhhcCcccCCEEECCCCCCCcc----hhhhhcCcCCEEECCCCc
Confidence            88776555421000       00112455666666666655432    12223 456666666653

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.19  E-value=6.6e-09  Score=89.03  Aligned_cols=131  Identities=15%  Similarity=0.027  Sum_probs=67.7

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCC-CCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSE-MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV  159 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~  159 (322)
                      ..++.|++++..-..........+++|+.|++++|. ++...- .....+++|++|++++|+.++.-... ....+++|+
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~l~~~n~l~~i~~~-~f~~l~~L~  108 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES-HSFYNLSKVTHIEIRNTRNLTYIDPD-ALKELPLLK  108 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECT-TTEESCTTCCEEEEEEETTCCEECTT-SEECCTTCC
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCH-hHcCCCcCCcEEECCCCCCeeEcCHH-HhCCCCCCC
Confidence            357778776643211111112357788888888874 543211 11245678888888765566532211 123567788


Q ss_pred             eeeccccccCCCCCCCCchHHHHHHhcCCCCC---EEEecCc-ccCHHHHHHHHhcCCCCC-EEeecCCC
Q 020754          160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLK---RLEMAYH-VISTEIVLKILSSCALLE-FLDLRGCW  224 (322)
Q Consensus       160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~---~L~L~~~-~i~~~~l~~i~~~~~~L~-~L~L~~c~  224 (322)
                      .|.+..+.+.  +  +..      ...+++|+   +|++++| .++.-.. ..+.++++|+ .|++++|.
T Consensus       109 ~L~l~~n~l~--~--lp~------~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~  167 (239)
T 2xwt_C          109 FLGIFNTGLK--M--FPD------LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNG  167 (239)
T ss_dssp             EEEEEEECCC--S--CCC------CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCC
T ss_pred             EEeCCCCCCc--c--ccc------cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCC
Confidence            8877655432  1  110      12445555   6666666 4432111 1123456666 66666653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.18  E-value=9.8e-08  Score=90.66  Aligned_cols=151  Identities=17%  Similarity=0.112  Sum_probs=74.4

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV  160 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~  160 (322)
                      +.++.|++++..-..........+++|+.|+|++|.++...  . ...+++|++|+|++| .++.-      ...++|+.
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N-~l~~l------~~~~~L~~  103 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNN-YVQEL------LVGPSIET  103 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE--E-CTTCTTCCEEECCSS-EEEEE------EECTTCCE
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc--c-cccCCCCCEEEecCC-cCCCC------CCCCCcCE
Confidence            35777777664321111111245677777777777554311  1 345677777777763 43321      12255555


Q ss_pred             eeccccccC--------------CCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCc
Q 020754          161 LCRNMHPLD--------------TADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  226 (322)
Q Consensus       161 L~l~~~~l~--------------~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~  226 (322)
                      |.++.+.+.              ++++.+.......+ ..+++|++|+|++|.++......+...+++|++|+|++|...
T Consensus       104 L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~  182 (487)
T 3oja_A          104 LHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY  182 (487)
T ss_dssp             EECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCG-GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred             EECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhh-cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence            555433221              11221211111112 246677777777776655433344445677777777776432


Q ss_pred             CCChHHHHhcCCCCeeeCC
Q 020754          227 KLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       227 ~~~~~~l~~~~~~Lk~L~~  245 (322)
                      ..   .....+++|++|.+
T Consensus       183 ~~---~~~~~l~~L~~L~L  198 (487)
T 3oja_A          183 DV---KGQVVFAKLKTLDL  198 (487)
T ss_dssp             EE---ECCCCCTTCCEEEC
T ss_pred             cc---cccccCCCCCEEEC
Confidence            21   11123566666643

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.17  E-value=1.5e-07  Score=86.56  Aligned_cols=132  Identities=14%  Similarity=0.114  Sum_probs=61.2

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV  160 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~  160 (322)
                      ..++.|++++..-...-..+...+++|+.|+|+++.++..... ....+++|++|+++++ .++...... ...+++|+.
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~  121 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFN-AIRYLPPHV-FQNVPLLTV  121 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCCE
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChh-hccCCCCcCEEECCCC-CCCcCCHHH-hcCCCCCCE
Confidence            3456666655431111122234466677777766655432111 1234566666666663 443221111 134566666


Q ss_pred             eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020754          161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  224 (322)
Q Consensus       161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~  224 (322)
                      |.++.+.+..    +    ...+...+++|++|+|++|.++.... ..+..+++|++|++++|.
T Consensus       122 L~L~~n~l~~----l----~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~  176 (390)
T 3o6n_A          122 LVLERNDLSS----L----PRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNR  176 (390)
T ss_dssp             EECCSSCCCC----C----CTTTTTTCTTCCEEECCSSCCCBCCT-TTTSSCTTCCEEECCSSC
T ss_pred             EECCCCccCc----C----CHHHhcCCCCCcEEECCCCccCccCh-hhccCCCCCCEEECCCCc
Confidence            6655443320    0    00111245666666666665442111 112345666666666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.17  E-value=1.4e-07  Score=84.55  Aligned_cols=83  Identities=14%  Similarity=0.131  Sum_probs=47.5

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHH-HHHHhcCCCc
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPAL-EAIGKHCKLL  158 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l-~~l~~~c~~L  158 (322)
                      ..+|+.|++++..-...-   ....++|++|.+.+|.++.... .....+++|+.|++++ +.++..++ ......+++|
T Consensus        99 l~~L~~L~Ls~n~l~~l~---~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~L  173 (330)
T 1xku_A           99 LVKLERLYLSKNQLKELP---EKMPKTLQELRVHENEITKVRK-SVFNGLNQMIVVELGT-NPLKSSGIENGAFQGMKKL  173 (330)
T ss_dssp             CTTCCEEECCSSCCSBCC---SSCCTTCCEEECCSSCCCBBCH-HHHTTCTTCCEEECCS-SCCCGGGBCTTGGGGCTTC
T ss_pred             CCCCCEEECCCCcCCccC---hhhcccccEEECCCCcccccCH-hHhcCCccccEEECCC-CcCCccCcChhhccCCCCc
Confidence            356888888764311100   0113678888888886653222 2335678888888887 45543221 2223456778


Q ss_pred             ceeeccccc
Q 020754          159 VVLCRNMHP  167 (322)
Q Consensus       159 ~~L~l~~~~  167 (322)
                      +.|.++.+.
T Consensus       174 ~~L~l~~n~  182 (330)
T 1xku_A          174 SYIRIADTN  182 (330)
T ss_dssp             CEEECCSSC
T ss_pred             CEEECCCCc
Confidence            888776543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.16  E-value=2.1e-08  Score=97.55  Aligned_cols=37  Identities=11%  Similarity=0.165  Sum_probs=16.4

Q ss_pred             cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCC
Q 020754          186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC  223 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c  223 (322)
                      .+++|++|+|++|.++.... ..+.++++|++|+|++|
T Consensus       471 ~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N  507 (606)
T 3vq2_A          471 NTTNLTFLDLSKCQLEQISW-GVFDTLHRLQLLNMSHN  507 (606)
T ss_dssp             TCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSS
T ss_pred             cCCCCCEEECCCCcCCccCh-hhhcccccCCEEECCCC
Confidence            34555555555554432111 11234455555555555

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.15  E-value=1e-07  Score=84.34  Aligned_cols=148  Identities=22%  Similarity=0.155  Sum_probs=73.3

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV  160 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~  160 (322)
                      ..++.|++++..-..........+++|+.|.|++|.++....  . ..+++|++|++++ +.++.  +......+++|+.
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~-~~l~~L~~L~Ls~-N~l~~--l~~~~~~l~~L~~  104 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--D-GTLPVLGTLDLSH-NQLQS--LPLLGQTLPALTV  104 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--C-SCCTTCCEEECCS-SCCSS--CCCCTTTCTTCCE
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--C-CCCCcCCEEECCC-CcCCc--CchhhccCCCCCE
Confidence            346677776543211111112346677777777765543211  1 3566777777776 44441  1122234566777


Q ss_pred             eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCC
Q 020754          161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL  240 (322)
Q Consensus       161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~L  240 (322)
                      |.++.+.+..-.       ...+ ..+++|++|+|++|.++.. ...++..+++|+.|+|++|.... -.......+++|
T Consensus       105 L~l~~N~l~~l~-------~~~~-~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L  174 (290)
T 1p9a_G          105 LDVSFNRLTSLP-------LGAL-RGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENL  174 (290)
T ss_dssp             EECCSSCCCCCC-------SSTT-TTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTC
T ss_pred             EECCCCcCcccC-------HHHH-cCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCCCcCCc-cCHHHhcCcCCC
Confidence            766555432100       0111 2566777777777765421 11223456677777777664332 222233455666


Q ss_pred             eeeC
Q 020754          241 KVLG  244 (322)
Q Consensus       241 k~L~  244 (322)
                      ++|.
T Consensus       175 ~~L~  178 (290)
T 1p9a_G          175 DTLL  178 (290)
T ss_dssp             CEEE
T ss_pred             CEEE
Confidence            6654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.13  E-value=1.5e-07  Score=90.28  Aligned_cols=154  Identities=15%  Similarity=0.058  Sum_probs=99.2

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV  160 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~  160 (322)
                      +.+++|++++..-..........+++|++|+|++|.++.... .....+++|++|++++ +.++......+ ..+++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~-n~l~~~~~~~~-~~l~~L~~  102 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEG-DAFYSLGSLEHLDLSD-NHLSSLSSSWF-GPLSSLKY  102 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTT-SCCCSCCHHHH-TTCTTCCE
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccCh-hhccccccCCEEECCC-CccCccCHHHh-ccCCCCcE
Confidence            469999998764211111112568999999999997764321 2234679999999998 56665444444 46899999


Q ss_pred             eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCC
Q 020754          161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL  240 (322)
Q Consensus       161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~L  240 (322)
                      |.++.+.+...+.       ......+++|++|++++|.+........+.++++|++|++++|..... .......+++|
T Consensus       103 L~Ls~n~l~~~~~-------~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L  174 (549)
T 2z81_A          103 LNLMGNPYQTLGV-------TSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY-QSQSLKSIRDI  174 (549)
T ss_dssp             EECTTCCCSSSCS-------SCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE-CTTTTTTCSEE
T ss_pred             EECCCCcccccch-------hhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccccc-ChhhhhccccC
Confidence            9987765532111       011247899999999998732211112345789999999999864321 12233567788


Q ss_pred             eeeCC
Q 020754          241 KVLGP  245 (322)
Q Consensus       241 k~L~~  245 (322)
                      ++|.+
T Consensus       175 ~~L~l  179 (549)
T 2z81_A          175 HHLTL  179 (549)
T ss_dssp             EEEEE
T ss_pred             ceEec
Confidence            88854

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.12  E-value=1.5e-06  Score=82.85  Aligned_cols=152  Identities=16%  Similarity=0.136  Sum_probs=82.6

Q ss_pred             cCCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHH-HHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCC
Q 020754           79 SSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDS-IVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL  157 (322)
Q Consensus        79 ~~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~-~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~  157 (322)
                      ..+.++.|+++++.-..........+++|+.|.|++|.++.. .+......+++|++|++++ +.++..........+++
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~-N~l~~~l~~~~~~~l~~  400 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQ-NSVSYDEKKGDCSWTKS  400 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCS-SCCBCCGGGCSCCCCTT
T ss_pred             hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCC-CcCCcccccchhccCcc
Confidence            345677777766532211111124567777788877766642 2334445677788888777 45543221122234577


Q ss_pred             cceeeccccccCCCCCCCCchHHHHHHhcC-CCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhc
Q 020754          158 LVVLCRNMHPLDTADKLSQDDEANAIASTM-PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGN  236 (322)
Q Consensus       158 L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~-p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~  236 (322)
                      |+.|.++.+.+.       ..    +...+ ++|+.|+|++|.++  .+..-+..+++|++|+|++|...+... .....
T Consensus       401 L~~L~Ls~N~l~-------~~----~~~~l~~~L~~L~Ls~N~l~--~ip~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~  466 (520)
T 2z7x_B          401 LLSLNMSSNILT-------DT----IFRCLPPRIKVLDLHSNKIK--SIPKQVVKLEALQELNVASNQLKSVPD-GIFDR  466 (520)
T ss_dssp             CCEEECCSSCCC-------GG----GGGSCCTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCCT-TTTTT
T ss_pred             CCEEECcCCCCC-------cc----hhhhhcccCCEEECCCCccc--ccchhhhcCCCCCEEECCCCcCCccCH-HHhcc
Confidence            777766554431       11    11122 57777888777766  222222367777888877775332222 23345


Q ss_pred             CCCCeeeCC
Q 020754          237 FPNLKVLGP  245 (322)
Q Consensus       237 ~~~Lk~L~~  245 (322)
                      +++|++|.+
T Consensus       467 l~~L~~L~l  475 (520)
T 2z7x_B          467 LTSLQKIWL  475 (520)
T ss_dssp             CTTCCEEEC
T ss_pred             CCcccEEEC
Confidence            666666643

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.11  E-value=4.3e-07  Score=89.07  Aligned_cols=109  Identities=14%  Similarity=0.053  Sum_probs=51.1

Q ss_pred             hcCCCccEEeccCCCCCCHH-----------------HHHHHH-hcCCCcceeeccccccCCCCCCCCchHHHHHHhcCC
Q 020754          127 GRLSAVTFLDLSYCSKIGAP-----------------ALEAIG-KHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMP  188 (322)
Q Consensus       127 ~~~~~L~~L~l~~c~~i~~~-----------------~l~~l~-~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p  188 (322)
                      ..+++|++|+|++ +.++..                 ....++ ..+++|++|.+..+.+.  +     .....+ ..++
T Consensus       203 ~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~--~-----~~p~~l-~~l~  273 (636)
T 4eco_A          203 MRLTKLRQFYMGN-SPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL--T-----KLPTFL-KALP  273 (636)
T ss_dssp             GGCTTCCEEEEES-CCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC--S-----SCCTTT-TTCS
T ss_pred             hcccCCCEEECcC-CccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC--c-----cChHHH-hcCC
Confidence            3467777777777 345542                 111111 15677777776554321  1     000112 2456


Q ss_pred             CCCEEEecCcc-cCHHHHHHHHh------cCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeC
Q 020754          189 KLKRLEMAYHV-ISTEIVLKILS------SCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  244 (322)
Q Consensus       189 ~L~~L~L~~~~-i~~~~l~~i~~------~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~  244 (322)
                      +|++|+|++|. ++...+..-+.      .+++|++|++++|.............+++|++|.
T Consensus       274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~  336 (636)
T 4eco_A          274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLE  336 (636)
T ss_dssp             SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEE
T ss_pred             CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEe
Confidence            66666666665 55412222111      2356666666665433211111234555555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.11  E-value=1.8e-07  Score=79.16  Aligned_cols=128  Identities=14%  Similarity=0.087  Sum_probs=87.2

Q ss_pred             CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHH
Q 020754          105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  184 (322)
Q Consensus       105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~  184 (322)
                      ++|+.|.|.++.++.... .....+++|+.|+|++ +.++.-...++ ..+++|+.|.++.+.+..    +.    ..+.
T Consensus        32 ~~l~~L~l~~n~i~~i~~-~~~~~l~~L~~L~Ls~-N~i~~~~~~~~-~~l~~L~~L~Ls~N~l~~----l~----~~~f  100 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPP-GAFSPYKKLRRIDLSN-NQISELAPDAF-QGLRSLNSLVLYGNKITE----LP----KSLF  100 (220)
T ss_dssp             TTCCEEECCSSCCCEECT-TSSTTCTTCCEEECCS-SCCCEECTTTT-TTCSSCCEEECCSSCCCC----CC----TTTT
T ss_pred             cCCCEEECCCCcCCCcCH-hHhhCCCCCCEEECCC-CcCCCcCHHHh-hCCcCCCEEECCCCcCCc----cC----HhHc
Confidence            589999999997764211 1234579999999998 56664322222 457999999988775531    11    1122


Q ss_pred             hcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          185 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       185 ~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      ..+++|++|+|++|.++.... ..+..+++|++|+|++|...+.. ......+++|++|.+
T Consensus       101 ~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L  159 (220)
T 2v9t_B          101 EGLFSLQLLLLNANKINCLRV-DAFQDLHNLNLLSLYDNKLQTIA-KGTFSPLRAIQTMHL  159 (220)
T ss_dssp             TTCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCC-TTTTTTCTTCCEEEC
T ss_pred             cCCCCCCEEECCCCCCCEeCH-HHcCCCCCCCEEECCCCcCCEEC-HHHHhCCCCCCEEEe
Confidence            478999999999998764322 23457899999999999654422 333457888998865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.10  E-value=5.9e-07  Score=90.89  Aligned_cols=130  Identities=15%  Similarity=0.114  Sum_probs=79.5

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCC-CCH-H---HHHHHH---hcCCCccEEeccCCCCCCHHHHHH-
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSE-MSD-S---IVAQIA---GRLSAVTFLDLSYCSKIGAPALEA-  150 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~-~---~l~~l~---~~~~~L~~L~l~~c~~i~~~~l~~-  150 (322)
                      ..+|+.|+++++.-...+......+++|+.|+|++|. ++. .   .+..+.   ..+|+|+.|+|++ +.++  .+.. 
T Consensus       490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~-N~L~--~ip~~  566 (876)
T 4ecn_A          490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY-NNLE--EFPAS  566 (876)
T ss_dssp             CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCS-SCCC--BCCCH
T ss_pred             CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeC-CcCC--ccCCh
Confidence            4579999998764211122223568999999999996 876 2   233332   3456999999998 5666  2322 


Q ss_pred             -HHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCC-CCEEeecCCC
Q 020754          151 -IGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCAL-LEFLDLRGCW  224 (322)
Q Consensus       151 -l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~-L~~L~L~~c~  224 (322)
                       ....+++|+.|.++.+.+.  .  +.     .+ ..+++|++|+|++|.++  .+..-+..+++ |+.|+|++|.
T Consensus       567 ~~l~~L~~L~~L~Ls~N~l~--~--lp-----~~-~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~  630 (876)
T 4ecn_A          567 ASLQKMVKLGLLDCVHNKVR--H--LE-----AF-GTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNK  630 (876)
T ss_dssp             HHHTTCTTCCEEECTTSCCC--B--CC-----CC-CTTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSC
T ss_pred             hhhhcCCCCCEEECCCCCcc--c--ch-----hh-cCCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCC
Confidence             3456789999988766542  1  11     11 35667777777776655  22222344555 7777776664

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.10  E-value=2.7e-07  Score=80.59  Aligned_cols=113  Identities=16%  Similarity=0.075  Sum_probs=60.6

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV  159 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~  159 (322)
                      ...++.|+++++.-..........+++|+.|+|++|.++..... ....+++|++|+++++ .++...... ...+++|+
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~  127 (276)
T 2z62_A           51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLSSLQKLVAVET-NLASLENFP-IGHLKTLK  127 (276)
T ss_dssp             CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCTTCCEEECTTS-CCCCSTTCC-CTTCTTCC
T ss_pred             ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh-hhcCCccccEEECCCC-CccccCchh-cccCCCCC
Confidence            35578888876532111111124567888888888765532211 2245678888888773 443211111 23567788


Q ss_pred             eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCH
Q 020754          160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIST  202 (322)
Q Consensus       160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~  202 (322)
                      .|.++.+.+...+       +......+++|++|+|++|.++.
T Consensus       128 ~L~l~~n~l~~~~-------l~~~~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A          128 ELNVAHNLIQSFK-------LPEYFSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             EEECCSSCCCCCC-------CCGGGGGCTTCCEEECCSSCCCE
T ss_pred             EEECcCCccceec-------CchhhccCCCCCEEECCCCCCCc
Confidence            8776655432100       01112356777777777776543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.10  E-value=1.3e-07  Score=79.98  Aligned_cols=134  Identities=12%  Similarity=0.053  Sum_probs=77.3

Q ss_pred             CCeeEEEecCCCChHH-HHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020754           81 GSLRKLCVSGLHNDMM-FSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV  159 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~-l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~  159 (322)
                      ..++.|++++..-... ...+...+++|+.|+|++|.++...- .....+++|++|+|++ +.++..... ....+++|+
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~-N~l~~~~~~-~~~~l~~L~  108 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE-GAFEGASGVNEILLTS-NRLENVQHK-MFKGLESLK  108 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCS-SCCCCCCGG-GGTTCSSCC
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH-HHhCCCCCCCEEECCC-CccCccCHh-HhcCCcCCC
Confidence            3467788765431111 01112467888888888886653211 1224568888888887 455432222 224568888


Q ss_pred             eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCc
Q 020754          160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  226 (322)
Q Consensus       160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~  226 (322)
                      .|.++.+.+....       ...+ ..+++|++|+|++|.++.... ..+..+++|+.|+|++|...
T Consensus       109 ~L~Ls~N~l~~~~-------~~~~-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          109 TLMLRSNRITCVG-------NDSF-IGLSSVRLLSLYDNQITTVAP-GAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             EEECTTSCCCCBC-------TTSS-TTCTTCSEEECTTSCCCCBCT-TTTTTCTTCCEEECCSCCEE
T ss_pred             EEECCCCcCCeEC-------HhHc-CCCccCCEEECCCCcCCEECH-HHhcCCCCCCEEEecCcCCc
Confidence            8877665442110       1112 257888888888887654211 22346788888888887533

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.09  E-value=3.2e-07  Score=89.31  Aligned_cols=131  Identities=14%  Similarity=0.119  Sum_probs=63.3

Q ss_pred             CeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCccee
Q 020754           82 SLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL  161 (322)
Q Consensus        82 ~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L  161 (322)
                      .++.+.+++..-......+...+++|+.|+|++|.++..... ....+++|++|+|++| .++..... ....+++|+.|
T Consensus        52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L  128 (597)
T 3oja_B           52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFN-AIRYLPPH-VFQNVPLLTVL  128 (597)
T ss_dssp             CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSS-CCCCCCTT-TTTTCTTCCEE
T ss_pred             CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChH-HhcCCCCCCEEECCCC-cCCCCCHH-HHcCCCCCCEE
Confidence            356666655432112222334566777777777655432111 1234567777777763 44332111 12345667777


Q ss_pred             eccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020754          162 CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  224 (322)
Q Consensus       162 ~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~  224 (322)
                      .++.+.+.  +.      ...+...+++|++|+|++|.++.... ..+..+++|++|+|++|.
T Consensus       129 ~L~~n~l~--~l------~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~  182 (597)
T 3oja_B          129 VLERNDLS--SL------PRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNR  182 (597)
T ss_dssp             ECCSSCCC--CC------CTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECTTSC
T ss_pred             EeeCCCCC--CC------CHHHhccCCCCCEEEeeCCcCCCCCh-hhhhcCCcCcEEECcCCC
Confidence            66554332  10      00111356666666666665443211 122355666666666664

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.08  E-value=4.5e-07  Score=83.23  Aligned_cols=37  Identities=24%  Similarity=0.205  Sum_probs=17.4

Q ss_pred             cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020754          186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  224 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~  224 (322)
                      .+|+|++|+|++|.++.  +..-+..+++|+.|+|++|.
T Consensus       293 ~l~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~L~~N~  329 (390)
T 3o6n_A          293 PIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNS  329 (390)
T ss_dssp             CCTTCCEEECCSSCCCC--CGGGHHHHTTCSEEECCSSC
T ss_pred             CCCCCCEEECCCCccee--cCccccccCcCCEEECCCCc
Confidence            35555555555555432  11112234555555555554

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.08  E-value=1.4e-07  Score=91.62  Aligned_cols=135  Identities=24%  Similarity=0.103  Sum_probs=87.3

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV  160 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~  160 (322)
                      ..+++|+|++-.-..........+++|+.|+|++|.|+... ......+++|++|+|++ +.++.-.. .....+++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~-N~l~~l~~-~~f~~L~~L~~  128 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTG-NPIQSLAL-GAFSGLSSLQK  128 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTT-CCCCEECG-GGGTTCTTCCE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccC-CcCCCCCH-HHhcCCCCCCE
Confidence            45899999764311111112346889999999999765311 11234679999999998 46653221 12356789999


Q ss_pred             eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCc
Q 020754          161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  226 (322)
Q Consensus       161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~  226 (322)
                      |.++.+.+..-.    .   .++ ..+++|++|+|++|.++...+...+..+++|++|++++|...
T Consensus       129 L~Ls~N~l~~l~----~---~~~-~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          129 LVAVETNLASLE----N---FPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             EECTTSCCCCST----T---CCC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             EECCCCcCCCCC----h---hhh-hcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence            988766542110    0   112 378999999999998765434445567899999999988543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=98.07  E-value=7.9e-07  Score=82.88  Aligned_cols=49  Identities=20%  Similarity=0.402  Sum_probs=43.9

Q ss_pred             CcccCCHHHHHHHHccCChHHHhhhhhhhhHHHHHHhcC-CCceeeecccc
Q 020754            9 HWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIG-PYCWQEIDIEE   58 (322)
Q Consensus         9 ~w~~LP~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~-~~lw~~i~l~~   58 (322)
                      -+..||+|++.+||+||+.+++++ |++|||+|+.++.+ +.+|+++-+..
T Consensus        14 ~~~~lp~~~~~~i~~~l~~~~l~~-~~~v~~~w~~~~~~~~~~w~~~~~~~   63 (464)
T 3v7d_B           14 LITSLPFEISLKIFNYLQFEDIIN-SLGVSQNWNKIIRKSTSLWKKLLISE   63 (464)
T ss_dssp             HHHHSCHHHHHHHHTTSCHHHHHH-HHTTCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             ChHHCCHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHHcCCHHHHHHHHhcc
Confidence            356799999999999999999998 89999999999998 89999876543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.07  E-value=1.1e-07  Score=92.42  Aligned_cols=133  Identities=20%  Similarity=0.110  Sum_probs=71.5

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV  160 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~  160 (322)
                      ..+++|++++..-..........+++|+.|+|++|.++.... .....+++|++|+++++ .++......+ ..+++|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~-~~~~~l~~L~~L~Ls~n-~l~~~~p~~~-~~l~~L~~  108 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIED-KAWHGLHHLSNLILTGN-PIQSFSPGSF-SGLTSLEN  108 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECT-TTTTTCTTCCEEECTTC-CCCCCCTTSS-TTCTTCCE
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCH-HHhhchhhcCEeECCCC-cccccChhhc-CCcccCCE
Confidence            457777776643211111122457778888887776553211 12245677888888773 4443222222 35677777


Q ss_pred             eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020754          161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  224 (322)
Q Consensus       161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~  224 (322)
                      |.++.+.+....       ...+ ..+++|++|+|++|.++...+...+.++++|++|++++|.
T Consensus       109 L~L~~n~l~~~~-------~~~~-~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~  164 (606)
T 3vq2_A          109 LVAVETKLASLE-------SFPI-GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY  164 (606)
T ss_dssp             EECTTSCCCCSS-------SSCC-TTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred             EEccCCcccccc-------cccc-CCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence            776655432110       0012 3566777777777765532222334566777777777664

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.07  E-value=2.9e-07  Score=90.72  Aligned_cols=130  Identities=16%  Similarity=0.009  Sum_probs=58.4

Q ss_pred             hCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHH
Q 020754          103 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  182 (322)
Q Consensus       103 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~  182 (322)
                      .+++|+.|+|++|.++... ......+++|++|+++++ .++.-...+ ...+++|++|.++.+.+....       ...
T Consensus        71 ~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~-------~~~  140 (680)
T 1ziw_A           71 KLPMLKVLNLQHNELSQLS-DKTFAFCTNLTELHLMSN-SIQKIKNNP-FVKQKNLITLDLSHNGLSSTK-------LGT  140 (680)
T ss_dssp             HCTTCCEEECCSSCCCCCC-TTTTTTCTTCSEEECCSS-CCCCCCSCT-TTTCTTCCEEECCSSCCSCCC-------CCS
T ss_pred             cccCcCEEECCCCccCccC-hhhhccCCCCCEEECCCC-ccCccChhH-ccccCCCCEEECCCCcccccC-------chh
Confidence            4556666666655443210 011234556666666653 332111011 124556666655544331100       001


Q ss_pred             HHhcCCCCCEEEecCcccCHHHHHHHH-hcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeC
Q 020754          183 IASTMPKLKRLEMAYHVISTEIVLKIL-SSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  244 (322)
Q Consensus       183 l~~~~p~L~~L~L~~~~i~~~~l~~i~-~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~  244 (322)
                      + ..+++|++|+|++|.++......+. ..+++|+.|++++|.... ........+++|+.|.
T Consensus       141 ~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~  201 (680)
T 1ziw_A          141 Q-VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE-FSPGCFHAIGRLFGLF  201 (680)
T ss_dssp             S-SCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC-BCTTGGGGSSEECEEE
T ss_pred             h-cccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccc-cChhhhhhhhhhhhhh
Confidence            1 2566777777777655432222221 145667777777664322 1122234555666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.06  E-value=9.1e-07  Score=79.29  Aligned_cols=83  Identities=12%  Similarity=0.087  Sum_probs=53.3

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV  159 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~  159 (322)
                      ...|+.|++++..-..........+++|+.|+|++|.++.-  .  ...+++|++|++++ +.++......+ ..+++|+
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l--~--~~~~~~L~~L~l~~-n~l~~~~~~~~-~~l~~L~  148 (330)
T 1xku_A           75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL--P--EKMPKTLQELRVHE-NEITKVRKSVF-NGLNQMI  148 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC--C--SSCCTTCCEEECCS-SCCCBBCHHHH-TTCTTCC
T ss_pred             CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCcc--C--hhhcccccEEECCC-CcccccCHhHh-cCCcccc
Confidence            45689999987542211111234688999999999866521  1  01237899999998 56664333333 4679999


Q ss_pred             eeecccccc
Q 020754          160 VLCRNMHPL  168 (322)
Q Consensus       160 ~L~l~~~~l  168 (322)
                      .|.+..+.+
T Consensus       149 ~L~l~~n~l  157 (330)
T 1xku_A          149 VVELGTNPL  157 (330)
T ss_dssp             EEECCSSCC
T ss_pred             EEECCCCcC
Confidence            998876654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.05  E-value=1.5e-07  Score=90.64  Aligned_cols=132  Identities=25%  Similarity=0.139  Sum_probs=63.1

Q ss_pred             CeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCccee
Q 020754           82 SLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL  161 (322)
Q Consensus        82 ~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L  161 (322)
                      .++.|++++..-..........+++|+.|+|++|.++.... .....+++|++|++++ +.++.....++ ..+++|++|
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~-n~l~~~~~~~~-~~l~~L~~L  105 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTG-NPIQSLALGAF-SGLSSLQKL  105 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECT-TTTTTCTTCCEEECTT-CCCCEECTTTT-TTCTTCCEE
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCc-ccccCchhCCEEeCcC-CcCCccCHhhh-cCccccccc
Confidence            46666666543111111112346677777777765543211 1223456777777776 34433221122 345667776


Q ss_pred             eccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020754          162 CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  224 (322)
Q Consensus       162 ~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~  224 (322)
                      .+..+.+..-+       ...+ ..+++|++|+|++|.++...+...+.++++|++|++++|.
T Consensus       106 ~L~~n~l~~l~-------~~~~-~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~  160 (570)
T 2z63_A          106 VAVETNLASLE-------NFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  160 (570)
T ss_dssp             ECTTSCCCCST-------TCSC-TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSC
T ss_pred             cccccccccCC-------Cccc-cccccccEEecCCCccceecChhhhcccCCCCEEeCcCCc
Confidence            66544331100       0011 2566666666666655432222223456666666666654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.03  E-value=2.1e-07  Score=91.68  Aligned_cols=11  Identities=27%  Similarity=0.144  Sum_probs=6.3

Q ss_pred             CCeeEEEecCC
Q 020754           81 GSLRKLCVSGL   91 (322)
Q Consensus        81 ~~l~~L~l~~~   91 (322)
                      +.++.|++++.
T Consensus       405 ~~L~~L~L~~N  415 (680)
T 1ziw_A          405 GHLEVLDLGLN  415 (680)
T ss_dssp             TTCCEEECCSS
T ss_pred             CCCCEEeCCCC
Confidence            45666666543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.02  E-value=2.1e-07  Score=91.31  Aligned_cols=86  Identities=12%  Similarity=0.093  Sum_probs=55.7

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCC-CCH-HHHHHHHh-----cCCCccEEeccCCCCCCHHHHHH--
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSE-MSD-SIVAQIAG-----RLSAVTFLDLSYCSKIGAPALEA--  150 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~-~~l~~l~~-----~~~~L~~L~l~~c~~i~~~~l~~--  150 (322)
                      ..+|+.|+++++.-...+......+++|+.|+|++|. ++. .....+..     .+++|++|++++ +.++  .+..  
T Consensus       248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~-n~l~--~ip~~~  324 (636)
T 4eco_A          248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY-NNLK--TFPVET  324 (636)
T ss_dssp             CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS-SCCS--SCCCHH
T ss_pred             cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC-CcCC--ccCchh
Confidence            4578999998764211111223468899999999997 887 33323322     348999999998 4665  2322  


Q ss_pred             HHhcCCCcceeecccccc
Q 020754          151 IGKHCKLLVVLCRNMHPL  168 (322)
Q Consensus       151 l~~~c~~L~~L~l~~~~l  168 (322)
                      ....+++|+.|.++.+.+
T Consensus       325 ~l~~l~~L~~L~L~~N~l  342 (636)
T 4eco_A          325 SLQKMKKLGMLECLYNQL  342 (636)
T ss_dssp             HHTTCTTCCEEECCSCCC
T ss_pred             hhccCCCCCEEeCcCCcC
Confidence            345678899998766544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.02  E-value=7.6e-08  Score=97.48  Aligned_cols=136  Identities=18%  Similarity=0.079  Sum_probs=62.0

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV  160 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~  160 (322)
                      +.+++|++++..-..........+++|+.|+|++|......-......+++|++|+|++ +.++.....++ ..+++|++
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~-N~l~~~~p~~~-~~l~~L~~  101 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS-SKIYFLHPDAF-QGLFHLFE  101 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT-CCCCEECTTSS-CSCSSCCC
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC-CcCcccCHhHc-cCCcccCE
Confidence            34666666553211111111234566666666666221110011224456666666666 34433211122 24566666


Q ss_pred             eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020754          161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  224 (322)
Q Consensus       161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~  224 (322)
                      |.++.+.+.-...   .   ......+++|++|+|++|.++.......+.++++|++|+|++|.
T Consensus       102 L~Ls~n~l~~~~~---~---~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A          102 LRLYFCGLSDAVL---K---DGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ  159 (844)
T ss_dssp             EECTTCCCSSCCS---T---TCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred             eeCcCCCCCcccc---c---CccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence            6665443321000   0   00012466666666666655433222234456666666666654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.02  E-value=3.9e-06  Score=78.96  Aligned_cols=51  Identities=20%  Similarity=0.078  Sum_probs=23.5

Q ss_pred             cCCCCCEEEecCcc-cCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeC
Q 020754          186 TMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  244 (322)
Q Consensus       186 ~~p~L~~L~L~~~~-i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~  244 (322)
                      .+++|++|++++|. ++..    -+..+++|+.|++++|......    ...+++|+.|.
T Consensus       146 ~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~l~~l~----l~~l~~L~~L~  197 (457)
T 3bz5_A          146 HNTQLTELDCHLNKKITKL----DVTPQTQLTTLDCSFNKITELD----VSQNKLLNRLN  197 (457)
T ss_dssp             TCTTCCEEECTTCSCCCCC----CCTTCTTCCEEECCSSCCCCCC----CTTCTTCCEEE
T ss_pred             cCCcCCEEECCCCCccccc----ccccCCcCCEEECCCCccceec----cccCCCCCEEE
Confidence            44555555555552 2111    0224556666666655322211    34556666664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.01  E-value=3.1e-07  Score=83.69  Aligned_cols=153  Identities=19%  Similarity=0.068  Sum_probs=92.9

Q ss_pred             CCeeEEEecCCCChHHHHHHHH-hCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAE-NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV  159 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~-~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~  159 (322)
                      ..++.|+|++..-......... .+++|+.|+|++|.++...- .....+++|++|+|++ +.++.-.. .....+++|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~-N~l~~~~~-~~~~~l~~L~  115 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSS-NHLHTLDE-FLFSDLQALE  115 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCS-SCCCEECT-TTTTTCTTCC
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh-hhccCCCCCCEEECCC-CcCCcCCH-HHhCCCcCCC
Confidence            4588999976532111111122 68899999999997764221 1234679999999998 56653221 1234679999


Q ss_pred             eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHH--HhcCCCCCEEeecCCCCcCCChHHHHhcC
Q 020754          160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI--LSSCALLEFLDLRGCWDVKLDDKFMKGNF  237 (322)
Q Consensus       160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i--~~~~~~L~~L~L~~c~~~~~~~~~l~~~~  237 (322)
                      .|.++.+.+..       -....+ ..+++|++|+|++|.++.-....+  ...+++|+.|+|++|....... .....+
T Consensus       116 ~L~L~~N~i~~-------~~~~~~-~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-~~~~~l  186 (361)
T 2xot_A          116 VLLLYNNHIVV-------VDRNAF-EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL-TDLQKL  186 (361)
T ss_dssp             EEECCSSCCCE-------ECTTTT-TTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH-HHHHHS
T ss_pred             EEECCCCcccE-------ECHHHh-CCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH-HHhhhc
Confidence            99887665421       111122 368999999999998764221111  1468999999999986443332 233455


Q ss_pred             CC--CeeeCC
Q 020754          238 PN--LKVLGP  245 (322)
Q Consensus       238 ~~--Lk~L~~  245 (322)
                      +.  |+.|.+
T Consensus       187 ~~~~l~~l~l  196 (361)
T 2xot_A          187 PAWVKNGLYL  196 (361)
T ss_dssp             CHHHHTTEEC
T ss_pred             cHhhcceEEe
Confidence            54  355543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.00  E-value=1.2e-06  Score=88.65  Aligned_cols=152  Identities=13%  Similarity=0.068  Sum_probs=99.0

Q ss_pred             CCeeEEEecCCCChH------------------HHHHH-HHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCC
Q 020754           81 GSLRKLCVSGLHNDM------------------MFSLI-AENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCS  141 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~------------------~l~~l-~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~  141 (322)
                      .+|+.|+|++..-..                  ....+ ...+++|+.|+|++|.+.... ......+++|+.|+|+++.
T Consensus       448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~i-P~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL-PDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSC-CGGGGGCSSCCEEECTTCT
T ss_pred             CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccC-hHHHhCCCCCCEEECcCCC
Confidence            568999997654221                  11111 126899999999998554322 2334568999999999953


Q ss_pred             CCCH-HHHHHHH------hcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCC
Q 020754          142 KIGA-PALEAIG------KHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCAL  214 (322)
Q Consensus       142 ~i~~-~~l~~l~------~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~  214 (322)
                      .++. .....+.      ..+|+|+.|.++.+.+.  .  +..  ...+ ..+++|++|+|++|.++  .+. .+..+++
T Consensus       527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~--~--ip~--~~~l-~~L~~L~~L~Ls~N~l~--~lp-~~~~L~~  596 (876)
T 4ecn_A          527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE--E--FPA--SASL-QKMVKLGLLDCVHNKVR--HLE-AFGTNVK  596 (876)
T ss_dssp             TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC--B--CCC--HHHH-TTCTTCCEEECTTSCCC--BCC-CCCTTSE
T ss_pred             CcccccchHHHHhhhhcccccCCccEEEeeCCcCC--c--cCC--hhhh-hcCCCCCEEECCCCCcc--cch-hhcCCCc
Confidence            3776 3333332      35579999988766553  1  111  1133 37999999999999887  333 4567899


Q ss_pred             CCEEeecCCCCcCCChHHHHhcCCC-CeeeCC
Q 020754          215 LEFLDLRGCWDVKLDDKFMKGNFPN-LKVLGP  245 (322)
Q Consensus       215 L~~L~L~~c~~~~~~~~~l~~~~~~-Lk~L~~  245 (322)
                      |+.|+|++|...... .. ...+++ |++|.+
T Consensus       597 L~~L~Ls~N~l~~lp-~~-l~~l~~~L~~L~L  626 (876)
T 4ecn_A          597 LTDLKLDYNQIEEIP-ED-FCAFTDQVEGLGF  626 (876)
T ss_dssp             ESEEECCSSCCSCCC-TT-SCEECTTCCEEEC
T ss_pred             ceEEECcCCccccch-HH-HhhccccCCEEEC
Confidence            999999998644222 12 345666 888764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.00  E-value=5.4e-07  Score=87.46  Aligned_cols=129  Identities=17%  Similarity=0.060  Sum_probs=86.2

Q ss_pred             CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHH
Q 020754          105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  184 (322)
Q Consensus       105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~  184 (322)
                      ++++.|+|++|.|+.-.- .....+++|++|+|++| .++.-.-.+ ...+++|++|.++.+.+..       -... ..
T Consensus        52 ~~~~~LdLs~N~i~~l~~-~~f~~l~~L~~L~Ls~N-~i~~i~~~~-f~~L~~L~~L~Ls~N~l~~-------l~~~-~f  120 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRC-EIQTIEDGA-YQSLSHLSTLILTGNPIQS-------LALG-AF  120 (635)
T ss_dssp             TTCCEEECTTSCCCEECT-TTTTTCTTCCEEECTTC-CCCEECTTT-TTTCTTCCEEECTTCCCCE-------ECGG-GG
T ss_pred             cCCCEEEeeCCCCCCCCH-HHHhCCCCCCEEECCCC-cCCCcChhH-hcCCCCCCEEEccCCcCCC-------CCHH-Hh
Confidence            479999999997764211 12356799999999994 555321112 2467999999887665421       1111 22


Q ss_pred             hcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          185 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       185 ~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      ..+++|++|+|++|.++.-.- ..+.++++|++|+|++|.............+++|++|.+
T Consensus       121 ~~L~~L~~L~Ls~N~l~~l~~-~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L  180 (635)
T 4g8a_A          121 SGLSSLQKLVAVETNLASLEN-FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL  180 (635)
T ss_dssp             TTCTTCCEEECTTSCCCCSTT-CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred             cCCCCCCEEECCCCcCCCCCh-hhhhcCcccCeeccccCccccCCCchhhccchhhhhhcc
Confidence            478999999999998764211 124578999999999986443222344567888998864

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=97.99  E-value=9.8e-06  Score=76.19  Aligned_cols=136  Identities=17%  Similarity=0.050  Sum_probs=97.2

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV  160 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~  160 (322)
                      ..++.|++++..-... .. ...+++|+.|+|++|.++...    ...+++|++|+++++ .++.-.    ...+++|+.
T Consensus        42 ~~L~~L~Ls~n~l~~~-~~-l~~l~~L~~L~Ls~n~l~~~~----~~~l~~L~~L~Ls~N-~l~~~~----~~~l~~L~~  110 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM-TG-IEKLTGLTKLICTSNNITTLD----LSQNTNLTYLACDSN-KLTNLD----VTPLTKLTY  110 (457)
T ss_dssp             TTCCEEECCSSCCCCC-TT-GGGCTTCSEEECCSSCCSCCC----CTTCTTCSEEECCSS-CCSCCC----CTTCTTCCE
T ss_pred             CCCCEEEccCCCcccC-hh-hcccCCCCEEEccCCcCCeEc----cccCCCCCEEECcCC-CCceee----cCCCCcCCE
Confidence            5689999987532111 12 356899999999999776531    456799999999984 565532    356899999


Q ss_pred             eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCC
Q 020754          161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNL  240 (322)
Q Consensus       161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~L  240 (322)
                      |.++.+.+.  +.        . ...+++|++|++++|.++...    +..+++|+.|++++|..++.-   -...+++|
T Consensus       111 L~L~~N~l~--~l--------~-~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~n~~~~~~---~~~~l~~L  172 (457)
T 3bz5_A          111 LNCDTNKLT--KL--------D-VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHLNKKITKL---DVTPQTQL  172 (457)
T ss_dssp             EECCSSCCS--CC--------C-CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTTCSCCCCC---CCTTCTTC
T ss_pred             EECCCCcCC--ee--------c-CCCCCcCCEEECCCCccceec----cccCCcCCEEECCCCCccccc---ccccCCcC
Confidence            988766542  21        1 347899999999999877631    457899999999999655421   23567888


Q ss_pred             eeeCC
Q 020754          241 KVLGP  245 (322)
Q Consensus       241 k~L~~  245 (322)
                      ++|.+
T Consensus       173 ~~L~l  177 (457)
T 3bz5_A          173 TTLDC  177 (457)
T ss_dssp             CEEEC
T ss_pred             CEEEC
Confidence            88865

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.99  E-value=5.4e-07  Score=73.27  Aligned_cols=109  Identities=17%  Similarity=0.169  Sum_probs=58.4

Q ss_pred             CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHH
Q 020754          105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  184 (322)
Q Consensus       105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~  184 (322)
                      ++|+.|.++++.++.. .......+++|++|++++ +.++.-. ......+++|+.|.++.+.+.  +.  .    ....
T Consensus        28 ~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~-n~l~~~~-~~~~~~l~~L~~L~l~~N~l~--~~--~----~~~~   96 (177)
T 2o6r_A           28 SSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQ-NQIQSLP-DGVFDKLTKLTILYLHENKLQ--SL--P----NGVF   96 (177)
T ss_dssp             TTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCS-SCCCCCC-TTTTTTCTTCCEEECCSSCCC--CC--C----TTTT
T ss_pred             CCCcEEEeCCCcccEe-CHHHhcCcccccEEECCC-CcceEeC-hhHccCCCccCEEECCCCCcc--cc--C----HHHh
Confidence            4677777777654421 111224457777777776 3444211 111234566777766554432  10  0    0112


Q ss_pred             hcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCC
Q 020754          185 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD  225 (322)
Q Consensus       185 ~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~  225 (322)
                      ..+++|++|+|++|.++.- ...++..+++|++|+|++|..
T Consensus        97 ~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~  136 (177)
T 2o6r_A           97 DKLTQLKELALDTNQLKSV-PDGIFDRLTSLQKIWLHTNPW  136 (177)
T ss_dssp             TTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSSCB
T ss_pred             hCCcccCEEECcCCcceEe-CHHHhcCCcccCEEEecCCCe
Confidence            3577788888887776521 112334577888888877753

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.98  E-value=3.1e-07  Score=82.46  Aligned_cols=81  Identities=10%  Similarity=0.043  Sum_probs=40.5

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV  159 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~  159 (322)
                      ..+|+.|+++++.-..........+++|+.|+|++|.++.-  ..  ..+++|++|++++ +.++.-. ......+++|+
T Consensus        77 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l--~~--~~~~~L~~L~l~~-n~i~~~~-~~~~~~l~~L~  150 (332)
T 2ft3_A           77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI--PP--NLPSSLVELRIHD-NRIRKVP-KGVFSGLRNMN  150 (332)
T ss_dssp             CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSC--CS--SCCTTCCEEECCS-SCCCCCC-SGGGSSCSSCC
T ss_pred             CCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCcc--Cc--cccccCCEEECCC-CccCccC-HhHhCCCccCC
Confidence            35688888876532111111124567788888877755421  10  1125666666666 3443211 11123456666


Q ss_pred             eeecccc
Q 020754          160 VLCRNMH  166 (322)
Q Consensus       160 ~L~l~~~  166 (322)
                      .|.+..+
T Consensus       151 ~L~l~~n  157 (332)
T 2ft3_A          151 CIEMGGN  157 (332)
T ss_dssp             EEECCSC
T ss_pred             EEECCCC
Confidence            6665444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.98  E-value=1.2e-06  Score=84.75  Aligned_cols=125  Identities=13%  Similarity=0.113  Sum_probs=87.3

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV  160 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~  160 (322)
                      ..++.|++++..-.. +.. ...+++|+.|+|++|.++  .+......+++|+.|+|++ +.++.  +. -...+++|+.
T Consensus       441 ~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~-N~l~~--lp-~l~~l~~L~~  512 (567)
T 1dce_A          441 ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASD-NALEN--VD-GVANLPRLQE  512 (567)
T ss_dssp             TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCS-SCCCC--CG-GGTTCSSCCE
T ss_pred             cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCC-CCCCC--Cc-ccCCCCCCcE
Confidence            358999998754221 122 456889999999999777  3333456789999999998 67764  33 2356899999


Q ss_pred             eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHH--HHHHHHhcCCCCCEEee
Q 020754          161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTE--IVLKILSSCALLEFLDL  220 (322)
Q Consensus       161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~--~l~~i~~~~~~L~~L~L  220 (322)
                      |.++.+.+.  +..    ....+ ..+++|+.|+|++|.++..  ....+...+|+|+.|++
T Consensus       513 L~Ls~N~l~--~~~----~p~~l-~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          513 LLLCNNRLQ--QSA----AIQPL-VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             EECCSSCCC--SSS----TTGGG-GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             EECCCCCCC--CCC----CcHHH-hcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            988766542  110    01223 3799999999999987543  34456667999999975

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.98  E-value=2.6e-06  Score=79.14  Aligned_cols=48  Identities=17%  Similarity=0.265  Sum_probs=43.5

Q ss_pred             CCCcccCCHHHHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCceeeec
Q 020754            7 FRHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEID   55 (322)
Q Consensus         7 ~~~w~~LP~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw~~i~   55 (322)
                      ...+..||+|++.+||+||+..++.+ +++|||+|+.++.++.+|+++-
T Consensus        16 ~d~~~~lp~e~~~~i~~~l~~~~l~~-~~~v~~~~~~~~~~~~~w~~~~   63 (445)
T 2ovr_B           16 RDFISLLPKELALYVLSFLEPKDLLQ-AAQTCRYWRILAEDNLLWREKC   63 (445)
T ss_dssp             CSTTTSSCHHHHHHHHTTSCHHHHHH-HTTSCHHHHHHHTCSHHHHHHH
T ss_pred             CChhHHCCHHHHHHHHHhCCHHHHHH-HHHHhHHHHhhcCchhHhhhhe
Confidence            44577899999999999999999998 7999999999999999999764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.96  E-value=3.8e-07  Score=75.74  Aligned_cols=125  Identities=18%  Similarity=0.207  Sum_probs=85.0

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV  159 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~  159 (322)
                      ...++.|++++..-.. +. ....+++|+.|++++|.++.  +......+++|+.|++++ +.++.  +..+ ..+++|+
T Consensus        47 l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~-N~l~~--l~~~-~~l~~L~  118 (198)
T 1ds9_A           47 LKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISY-NQIAS--LSGI-EKLVNLR  118 (198)
T ss_dssp             TTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEE-EECCC--HHHH-HHHHHSS
T ss_pred             CCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcC-CcCCc--CCcc-ccCCCCC
Confidence            4569999997642111 12 23467999999999996552  333444568999999998 46664  3333 3568999


Q ss_pred             eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHH---------HHHHHHhcCCCCCEEe
Q 020754          160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTE---------IVLKILSSCALLEFLD  219 (322)
Q Consensus       160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~---------~l~~i~~~~~~L~~L~  219 (322)
                      .|.+..+.+       ..-........+++|++|++++|.++..         ....++..+|+|+.|+
T Consensus       119 ~L~l~~N~i-------~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          119 VLYMSNNKI-------TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EEEESEEEC-------CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             EEECCCCcC-------CchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            998876654       2222222334899999999999986543         2334567899999998

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.94  E-value=1e-07  Score=85.12  Aligned_cols=160  Identities=13%  Similarity=0.124  Sum_probs=96.0

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV  159 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~  159 (322)
                      ...|+.|++++..-...+......+++|+.|+|++|.++... ......+++|++|++++ +.++......+....++|+
T Consensus       100 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~~L~  177 (313)
T 1ogq_A          100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL-PPSISSLPNLVGITFDG-NRISGAIPDSYGSFSKLFT  177 (313)
T ss_dssp             CTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCC-CGGGGGCTTCCEEECCS-SCCEEECCGGGGCCCTTCC
T ss_pred             CCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcC-ChHHhcCCCCCeEECcC-CcccCcCCHHHhhhhhcCc
Confidence            356899998764321111112346889999999998554211 12234578999999998 4665333334443334788


Q ss_pred             eeeccccccC----------------CCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCC
Q 020754          160 VLCRNMHPLD----------------TADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC  223 (322)
Q Consensus       160 ~L~l~~~~l~----------------~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c  223 (322)
                      .|.++.+.+.                +.++.+.... ......+++|+.|+|++|.++....  .+..+++|++|+|++|
T Consensus       178 ~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~Ls~N  254 (313)
T 1ogq_A          178 SMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDA-SVLFGSDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNN  254 (313)
T ss_dssp             EEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECC-GGGCCTTSCCSEEECCSSEECCBGG--GCCCCTTCCEEECCSS
T ss_pred             EEECcCCeeeccCChHHhCCcccEEECcCCcccCcC-CHHHhcCCCCCEEECCCCceeeecC--cccccCCCCEEECcCC
Confidence            8877654332                2222111111 1222468999999999998763211  1456799999999998


Q ss_pred             CCcCCChHHHHhcCCCCeeeCC
Q 020754          224 WDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       224 ~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      ...... ......+++|++|.+
T Consensus       255 ~l~~~~-p~~l~~l~~L~~L~L  275 (313)
T 1ogq_A          255 RIYGTL-PQGLTQLKFLHSLNV  275 (313)
T ss_dssp             CCEECC-CGGGGGCTTCCEEEC
T ss_pred             cccCcC-ChHHhcCcCCCEEEC
Confidence            644222 223467889999865

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.94  E-value=1.2e-06  Score=85.16  Aligned_cols=120  Identities=22%  Similarity=0.202  Sum_probs=68.2

Q ss_pred             CCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHh
Q 020754          106 SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS  185 (322)
Q Consensus       106 ~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~  185 (322)
                      +|+.|.|.+|.++..   .....+++|+.|+|++ +.++......+ ..+++|+.|.++.+.+.-         +.....
T Consensus       233 ~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~-N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~---------l~~~~~  298 (597)
T 3oja_B          233 ELTILKLQHNNLTDT---AWLLNYPGLVEVDLSY-NELEKIMYHPF-VKMQRLERLYISNNRLVA---------LNLYGQ  298 (597)
T ss_dssp             CCCEEECCSSCCCCC---GGGGGCTTCSEEECCS-SCCCEEESGGG-TTCSSCCEEECTTSCCCE---------EECSSS
T ss_pred             CCCEEECCCCCCCCC---hhhccCCCCCEEECCC-CccCCCCHHHh-cCccCCCEEECCCCCCCC---------CCcccc
Confidence            455555555544432   2234567777777776 45543322222 345777777665544311         001113


Q ss_pred             cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      .+|+|+.|+|++|.++.  +..-+..+++|+.|+|++|...+..    ...+++|+.|.+
T Consensus       299 ~l~~L~~L~Ls~N~l~~--i~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~L~~L~l  352 (597)
T 3oja_B          299 PIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTL  352 (597)
T ss_dssp             CCTTCCEEECCSSCCCC--CGGGHHHHTTCSEEECCSSCCCCCC----CCTTCCCSEEEC
T ss_pred             cCCCCcEEECCCCCCCc--cCcccccCCCCCEEECCCCCCCCcC----hhhcCCCCEEEe
Confidence            57888888888887662  2222346788888888888644321    456677777764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.92  E-value=3.8e-07  Score=92.38  Aligned_cols=132  Identities=16%  Similarity=0.044  Sum_probs=88.5

Q ss_pred             CCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH
Q 020754          104 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  183 (322)
Q Consensus       104 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l  183 (322)
                      .++|+.|+|++|.++..... ....+++|++|+|++|..+..-...+ ...+++|+.|.++.+.+..       ....++
T Consensus        23 p~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~-f~~L~~L~~L~Ls~N~l~~-------~~p~~~   93 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEA-FRNLPNLRILDLGSSKIYF-------LHPDAF   93 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTT-TSSCTTCCEEECTTCCCCE-------ECTTSS
T ss_pred             CCCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHHH-hcCCCCCCEEECCCCcCcc-------cCHhHc
Confidence            47899999999977643222 23567999999999964433211122 2578999999887665421       111222


Q ss_pred             HhcCCCCCEEEecCcccCHHHHHH-HHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          184 ASTMPKLKRLEMAYHVISTEIVLK-ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       184 ~~~~p~L~~L~L~~~~i~~~~l~~-i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                       ..+++|++|+|++|.++...+.. .+..+++|++|+|++|...+.........+++|++|.+
T Consensus        94 -~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L  155 (844)
T 3j0a_A           94 -QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF  155 (844)
T ss_dssp             -CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE
T ss_pred             -cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC
Confidence             37999999999999876532221 24578999999999996544322234568888988864

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.92  E-value=2.2e-06  Score=79.46  Aligned_cols=47  Identities=19%  Similarity=0.299  Sum_probs=42.4

Q ss_pred             CcccCCHH----HHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCceeeecc
Q 020754            9 HWDELIPD----ALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDI   56 (322)
Q Consensus         9 ~w~~LP~e----iL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw~~i~l   56 (322)
                      .+..||+|    ++.+||+||+..++.+ |++|||+|+.++.++.+|+++-.
T Consensus        10 ~~~~lp~e~~~~~~~~i~~~l~~~~l~~-~~~v~~~w~~~~~~~~~w~~~~~   60 (435)
T 1p22_A           10 FITALPARGLDHIAENILSYLDAKSLCA-AELVCKEWYRVTSDGMLWKKLIE   60 (435)
T ss_dssp             HHHHTGGGTCHHHHHHHHTTCCHHHHHH-HHHHCHHHHHHHHHTTHHHHHHH
T ss_pred             hHHHCCcchHHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHhcChHHHHHHHH
Confidence            35679999    9999999999999998 79999999999999999997743

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.88  E-value=1.1e-06  Score=74.40  Aligned_cols=130  Identities=15%  Similarity=0.054  Sum_probs=87.2

Q ss_pred             CCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH
Q 020754          104 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  183 (322)
Q Consensus       104 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l  183 (322)
                      .+.++.|.|++|.++..........+++|++|+|++ +.++.-...+ ...+++|+.|.++.+.+..       -.... 
T Consensus        31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~-~~~l~~L~~L~Ls~N~l~~-------~~~~~-  100 (220)
T 2v70_A           31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSN-NKITDIEEGA-FEGASGVNEILLTSNRLEN-------VQHKM-  100 (220)
T ss_dssp             CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCS-SCCCEECTTT-TTTCTTCCEEECCSSCCCC-------CCGGG-
T ss_pred             CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCC-CcCCEECHHH-hCCCCCCCEEECCCCccCc-------cCHhH-
Confidence            346899999999776432122245689999999998 5666432222 2457999999887665521       11112 


Q ss_pred             HhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       184 ~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      ...+++|++|+|++|.++.... ..+..+++|++|+|++|...+.. ......+++|++|.+
T Consensus       101 ~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L  160 (220)
T 2v70_A          101 FKGLESLKTLMLRSNRITCVGN-DSFIGLSSVRLLSLYDNQITTVA-PGAFDTLHSLSTLNL  160 (220)
T ss_dssp             GTTCSSCCEEECTTSCCCCBCT-TSSTTCTTCSEEECTTSCCCCBC-TTTTTTCTTCCEEEC
T ss_pred             hcCCcCCCEEECCCCcCCeECH-hHcCCCccCCEEECCCCcCCEEC-HHHhcCCCCCCEEEe
Confidence            2478999999999998764321 22347899999999998644322 233457888998865

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.88  E-value=5.6e-07  Score=81.95  Aligned_cols=138  Identities=17%  Similarity=0.044  Sum_probs=85.8

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV  159 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~  159 (322)
                      ..+|+.|+|++..-..........+++|+.|+|++|.++... ......+++|+.|+|++ +.++.-...+ ...+++|+
T Consensus        63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~-N~i~~~~~~~-~~~l~~L~  139 (361)
T 2xot_A           63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD-EFLFSDLQALEVLLLYN-NHIVVVDRNA-FEDMAQLQ  139 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCS-SCCCEECTTT-TTTCTTCC
T ss_pred             ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCC-HHHhCCCcCCCEEECCC-CcccEECHHH-hCCcccCC
Confidence            467899999765321111112346889999999999765321 12234679999999998 5665432222 24578999


Q ss_pred             eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCC--CCEEeecCCCCc
Q 020754          160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCAL--LEFLDLRGCWDV  226 (322)
Q Consensus       160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~--L~~L~L~~c~~~  226 (322)
                      .|.++.+.+..    +....+..+ ..+++|++|+|++|.++.-... .+..++.  |+.|+|.+|+..
T Consensus       140 ~L~L~~N~l~~----l~~~~~~~~-~~l~~L~~L~L~~N~l~~l~~~-~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          140 KLYLSQNQISR----FPVELIKDG-NKLPKLMLLDLSSNKLKKLPLT-DLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             EEECCSSCCCS----CCGGGTC-----CTTCCEEECCSSCCCCCCHH-HHHHSCHHHHTTEECCSSCEE
T ss_pred             EEECCCCcCCe----eCHHHhcCc-ccCCcCCEEECCCCCCCccCHH-HhhhccHhhcceEEecCCCcc
Confidence            99887765531    111111111 3689999999999987643322 2345665  588999998643

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.86  E-value=9.8e-07  Score=79.20  Aligned_cols=156  Identities=18%  Similarity=0.075  Sum_probs=87.2

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHH-HHHhcCCCc
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALE-AIGKHCKLL  158 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~-~l~~~c~~L  158 (322)
                      ...|+.|++++..-...-.   ...++|++|++++|.++... ......+++|++|++++ +.++..++. .....+ +|
T Consensus       101 l~~L~~L~L~~n~l~~l~~---~~~~~L~~L~l~~n~i~~~~-~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l-~L  174 (332)
T 2ft3_A          101 LRKLQKLYISKNHLVEIPP---NLPSSLVELRIHDNRIRKVP-KGVFSGLRNMNCIEMGG-NPLENSGFEPGAFDGL-KL  174 (332)
T ss_dssp             CTTCCEEECCSSCCCSCCS---SCCTTCCEEECCSSCCCCCC-SGGGSSCSSCCEEECCS-CCCBGGGSCTTSSCSC-CC
T ss_pred             cCCCCEEECCCCcCCccCc---cccccCCEEECCCCccCccC-HhHhCCCccCCEEECCC-CccccCCCCcccccCC-cc
Confidence            4568899987643111000   11268999999888665321 12235678899999888 455432211 111111 45


Q ss_pred             ceeeccccc--------------cCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020754          159 VVLCRNMHP--------------LDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  224 (322)
Q Consensus       159 ~~L~l~~~~--------------l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~  224 (322)
                      +.|.++.+.              +++.++.+.......+ ..+++|++|+|++|.++.... ..+..+++|+.|+|++|.
T Consensus       175 ~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l-~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~  252 (332)
T 2ft3_A          175 NYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDL-LRYSKLYRLGLGHNQIRMIEN-GSLSFLPTLRELHLDNNK  252 (332)
T ss_dssp             SCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSS-TTCTTCSCCBCCSSCCCCCCT-TGGGGCTTCCEEECCSSC
T ss_pred             CEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHh-cCCCCCCEEECCCCcCCcCCh-hHhhCCCCCCEEECCCCc
Confidence            555543322              1222222222211222 368899999999987665321 124578999999999885


Q ss_pred             CcCCChHHHHhcCCCCeeeCC
Q 020754          225 DVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       225 ~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      ...... . ...+++|++|.+
T Consensus       253 l~~lp~-~-l~~l~~L~~L~l  271 (332)
T 2ft3_A          253 LSRVPA-G-LPDLKLLQVVYL  271 (332)
T ss_dssp             CCBCCT-T-GGGCTTCCEEEC
T ss_pred             CeecCh-h-hhcCccCCEEEC
Confidence            443222 2 457888888865

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.85  E-value=3e-05  Score=67.38  Aligned_cols=72  Identities=17%  Similarity=0.287  Sum_probs=41.1

Q ss_pred             ChhHHHHHHHHHHHhcCCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCC--CCHHHHHHHHhcCCCccEEeccCCC
Q 020754           64 QPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSE--MSDSIVAQIAGRLSAVTFLDLSYCS  141 (322)
Q Consensus        64 ~~~~~~~~l~~l~~r~~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~--i~~~~l~~l~~~~~~L~~L~l~~c~  141 (322)
                      .+..+..+-..+..|....-+.|+++.+..+..+...        .+.++.+.  .-...+..+...+|+|++|+|++ +
T Consensus       110 ~~~~~~~Lk~~l~~ryn~~~~~LdLs~l~~dp~L~~~--------~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~-N  180 (267)
T 3rw6_A          110 KPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQ--------NIDVVLNRRSCMAATLRIIEENIPELLSLNLSN-N  180 (267)
T ss_dssp             CHHHHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHT--------TCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTT-S
T ss_pred             CHHHHHHHHHHHHhccchhccccCHHHcCCCcchhhc--------CccccCCHHHHHHHHHHHHHhhCCCCCEEECCC-C
Confidence            3455566666667788777888998876555544431        12233331  11223333445677888888887 5


Q ss_pred             CCC
Q 020754          142 KIG  144 (322)
Q Consensus       142 ~i~  144 (322)
                      .++
T Consensus       181 ~l~  183 (267)
T 3rw6_A          181 RLY  183 (267)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.84  E-value=1.8e-06  Score=71.47  Aligned_cols=108  Identities=16%  Similarity=0.139  Sum_probs=61.2

Q ss_pred             CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHH
Q 020754          105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  184 (322)
Q Consensus       105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~  184 (322)
                      ++|+.|.|.++.++.  +......+++|+.|+|++ +.++.-...+ ...+++|+.|.++.+.+....       ..++ 
T Consensus        31 ~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~-f~~l~~L~~L~Ls~N~l~~i~-------~~~f-   98 (193)
T 2wfh_A           31 RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSN-NRISTLSNQS-FSNMTQLLTLILSYNRLRCIP-------PRTF-   98 (193)
T ss_dssp             TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCS-SCCCCCCTTT-TTTCTTCCEEECCSSCCCBCC-------TTTT-
T ss_pred             CCCCEEECCCCcCch--hHHHhhcccCCCEEECCC-CcCCEeCHhH-ccCCCCCCEEECCCCccCEeC-------HHHh-
Confidence            467777777775552  212334567777777776 4554321111 234567777766655432111       0112 


Q ss_pred             hcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCC
Q 020754          185 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD  225 (322)
Q Consensus       185 ~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~  225 (322)
                      ..+++|++|+|++|.++.-. ...+..+++|+.|+|+++..
T Consensus        99 ~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           99 DGLKSLRLLSLHGNDISVVP-EGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             TTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCCEEECCCCCCCeeC-hhhhhcCccccEEEeCCCCe
Confidence            35778888888888765311 12234677888888887753

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.81  E-value=4.2e-06  Score=80.64  Aligned_cols=37  Identities=32%  Similarity=0.383  Sum_probs=17.3

Q ss_pred             hCCCCCEEecCCCCCCHH-HHHHHHhcCCCccEEeccC
Q 020754          103 NAGSLQTLRLPRSEMSDS-IVAQIAGRLSAVTFLDLSY  139 (322)
Q Consensus       103 ~~~~L~~L~L~~~~i~~~-~l~~l~~~~~~L~~L~l~~  139 (322)
                      .+++|+.|.|++|.++.. .+......+++|+.|++++
T Consensus       375 ~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~  412 (562)
T 3a79_B          375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL  412 (562)
T ss_dssp             SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred             ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence            345555555555544421 1122223445555555555

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.78  E-value=6.9e-07  Score=73.85  Aligned_cols=110  Identities=16%  Similarity=0.118  Sum_probs=61.5

Q ss_pred             CCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHh
Q 020754          106 SLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS  185 (322)
Q Consensus       106 ~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~  185 (322)
                      +|+.|.|.++.++......+...+++|++|+|++ +.++.....++ ..+++|+.|.++.+.+....       ...+ .
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~-------~~~~-~   99 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNAF-EGASHIQELQLGENKIKEIS-------NKMF-L   99 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTTTT-TTCTTCCEEECCSCCCCEEC-------SSSS-T
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCC-CCCCCcCHhHc-CCcccCCEEECCCCcCCccC-------HHHh-c
Confidence            6677777776554321111234567777777776 45543211122 34567777766555432100       0111 3


Q ss_pred             cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCc
Q 020754          186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  226 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~  226 (322)
                      .+++|++|+|++|.++.... ..+..+++|++|+|+++...
T Consensus       100 ~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          100 GLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             TCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBC
T ss_pred             CCCCCCEEECCCCcCCeeCH-HHhhcCCCCCEEEeCCCCcc
Confidence            57888888888887654211 22346788889988887543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.66  E-value=1e-06  Score=75.24  Aligned_cols=128  Identities=13%  Similarity=0.014  Sum_probs=83.6

Q ss_pred             CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccc-cccCCCCCCCCchHHHHH
Q 020754          105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM-HPLDTADKLSQDDEANAI  183 (322)
Q Consensus       105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~-~~l~~~~~~~~~~~~~~l  183 (322)
                      ++|+.|+|+++.++...- .....+++|++|+++++..++.-... ....+++|++|.+.. +.+..-.       .. .
T Consensus        31 ~~l~~L~l~~n~l~~i~~-~~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~-------~~-~  100 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPS-HAFSNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYID-------PD-A  100 (239)
T ss_dssp             TTCCEEEEESCCCSEECT-TTTTTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEEC-------TT-S
T ss_pred             CcccEEEEeCCcceEECH-HHccCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcC-------HH-H
Confidence            489999999997764221 12346799999999985335432111 125689999999875 4432100       01 1


Q ss_pred             HhcCCCCCEEEecCcccCHHHHHHHHhcCCCCC---EEeecCCCCcCCChHHHHhcCCCCe-eeCC
Q 020754          184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLE---FLDLRGCWDVKLDDKFMKGNFPNLK-VLGP  245 (322)
Q Consensus       184 ~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~---~L~L~~c~~~~~~~~~l~~~~~~Lk-~L~~  245 (322)
                      ...+++|++|++++|.++.  +.. +..+++|+   .|++++|..++.-.......+++|+ +|.+
T Consensus       101 f~~l~~L~~L~l~~n~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l  163 (239)
T 2xwt_C          101 LKELPLLKFLGIFNTGLKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKL  163 (239)
T ss_dssp             EECCTTCCEEEEEEECCCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEEC
T ss_pred             hCCCCCCCEEeCCCCCCcc--ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEc
Confidence            2368999999999998764  222 45778888   9999998444322223346788888 8864

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.59  E-value=6.2e-05  Score=73.46  Aligned_cols=53  Identities=11%  Similarity=-0.037  Sum_probs=31.0

Q ss_pred             cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      .+++|+.|+|++|.++.  +.   ..+++|+.|+|++|...... .. ...+++|+.|.+
T Consensus       239 ~l~~L~~L~Ls~N~L~~--lp---~~~~~L~~L~Ls~N~L~~lp-~~-l~~l~~L~~L~L  291 (622)
T 3g06_A          239 LPSELKELMVSGNRLTS--LP---MLPSGLLSLSVYRNQLTRLP-ES-LIHLSSETTVNL  291 (622)
T ss_dssp             CCTTCCEEECCSSCCSC--CC---CCCTTCCEEECCSSCCCSCC-GG-GGGSCTTCEEEC
T ss_pred             CCCcCcEEECCCCCCCc--CC---cccccCcEEeCCCCCCCcCC-HH-HhhccccCEEEe
Confidence            45677777777776552  11   15567777777777433221 22 356677777754

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.58  E-value=5.8e-06  Score=67.04  Aligned_cols=110  Identities=14%  Similarity=0.160  Sum_probs=72.1

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV  160 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~  160 (322)
                      ..++.|++++..-..........+++|+.|+|++|.++.. .......+++|++|++++ +.++.-. ......+++|+.
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~-N~l~~~~-~~~~~~l~~L~~  104 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHE-NKLQSLP-NGVFDKLTQLKE  104 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCS-SCCCCCC-TTTTTTCTTCCE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCC-CCccccC-HHHhhCCcccCE
Confidence            4689999987532211122234678999999999976632 112234679999999998 5665321 122346789999


Q ss_pred             eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccC
Q 020754          161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIS  201 (322)
Q Consensus       161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~  201 (322)
                      |.++.+.+.  +.  .    ..+...+++|++|+|++|.++
T Consensus       105 L~l~~N~l~--~~--~----~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          105 LALDTNQLK--SV--P----DGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             EECCSSCCS--CC--C----TTTTTTCTTCCEEECCSSCBC
T ss_pred             EECcCCcce--Ee--C----HHHhcCCcccCEEEecCCCee
Confidence            998766553  11  1    112346899999999999865

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.54  E-value=5.2e-06  Score=82.61  Aligned_cols=109  Identities=17%  Similarity=0.104  Sum_probs=66.3

Q ss_pred             HHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHH
Q 020754          101 AENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEA  180 (322)
Q Consensus       101 ~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~  180 (322)
                      ...+++|+.|+|++|.+..  +..-...+++|++|+|++ +.++  .+..-...+++|+.|.|+.+.+.  .  +..   
T Consensus       220 ~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~-N~l~--~lp~~~~~l~~L~~L~Ls~N~l~--~--lp~---  287 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNG-NSLT--ELPAEIKNLSNLRVLDLSHNRLT--S--LPA---  287 (727)
T ss_dssp             --CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTT-SCCS--CCCGGGGGGTTCCEEECTTSCCS--S--CCS---
T ss_pred             hccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeC-CcCc--ccChhhhCCCCCCEEeCcCCcCC--c--cCh---
Confidence            3456788888888885541  111122578888888887 4665  22222245688888877766553  1  111   


Q ss_pred             HHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCC
Q 020754          181 NAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD  225 (322)
Q Consensus       181 ~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~  225 (322)
                       .+ ..+++|++|+|++|.++.  +..-+..+++|+.|+|++|..
T Consensus       288 -~~-~~l~~L~~L~L~~N~l~~--lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          288 -EL-GSCFQLKYFYFFDNMVTT--LPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             -SG-GGGTTCSEEECCSSCCCC--CCSSTTSCTTCCCEECTTSCC
T ss_pred             -hh-cCCCCCCEEECCCCCCCc--cChhhhcCCCccEEeCCCCcc
Confidence             12 367788888888887652  222245678888888888753

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.53  E-value=1.3e-05  Score=79.79  Aligned_cols=106  Identities=23%  Similarity=0.196  Sum_probs=70.7

Q ss_pred             HHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHH
Q 020754          124 QIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTE  203 (322)
Q Consensus       124 ~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~  203 (322)
                      .....+++|+.|+|++ +.+.. .-..+ ..+++|+.|.|+.+.+.  .  +. .   .+ ..+++|+.|+|++|.|+  
T Consensus       218 ~~~~~l~~L~~L~Ls~-n~l~~-l~~~~-~~l~~L~~L~Ls~N~l~--~--lp-~---~~-~~l~~L~~L~Ls~N~l~--  283 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSN-LQIFN-ISANI-FKYDFLTRLYLNGNSLT--E--LP-A---EI-KNLSNLRVLDLSHNRLT--  283 (727)
T ss_dssp             ----CCCCCCEEECTT-SCCSC-CCGGG-GGCCSCSCCBCTTSCCS--C--CC-G---GG-GGGTTCCEEECTTSCCS--
T ss_pred             hhhccCCCCcEEECCC-CCCCC-CChhh-cCCCCCCEEEeeCCcCc--c--cC-h---hh-hCCCCCCEEeCcCCcCC--
Confidence            3445679999999998 45542 11122 26899999988776553  1  11 1   23 47899999999999987  


Q ss_pred             HHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          204 IVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       204 ~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      .+..-+..+++|++|+|++|...... .. ...+++|++|.+
T Consensus       284 ~lp~~~~~l~~L~~L~L~~N~l~~lp-~~-~~~l~~L~~L~L  323 (727)
T 4b8c_D          284 SLPAELGSCFQLKYFYFFDNMVTTLP-WE-FGNLCNLQFLGV  323 (727)
T ss_dssp             SCCSSGGGGTTCSEEECCSSCCCCCC-SS-TTSCTTCCCEEC
T ss_pred             ccChhhcCCCCCCEEECCCCCCCccC-hh-hhcCCCccEEeC
Confidence            33333567899999999999543322 22 467888888864

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.47  E-value=3.2e-05  Score=74.67  Aligned_cols=56  Identities=9%  Similarity=0.003  Sum_probs=23.6

Q ss_pred             CCCCEEEecCcccCHHHH-H-HHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          188 PKLKRLEMAYHVISTEIV-L-KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       188 p~L~~L~L~~~~i~~~~l-~-~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      ++|+.|+|++|.|+.-.. . .+....+.|+.|+|++|..... ...+. .+++|++|.+
T Consensus       180 ~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~l-p~~l~-~l~~L~~L~L  237 (571)
T 3cvr_A          180 ESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHI-PENIL-SLDPTCTIIL  237 (571)
T ss_dssp             TTCCEEECCSSCCSSCCCCC--------CCEEEECCSSCCCCC-CGGGG-GSCTTEEEEC
T ss_pred             CCCCEEECcCCCCCchhhHHHhhhcccccceEEecCCCcceec-CHHHh-cCCCCCEEEe
Confidence            566666666665441000 0 1111122236666666643322 22222 2666666653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.47  E-value=7.3e-05  Score=72.94  Aligned_cols=77  Identities=14%  Similarity=0.010  Sum_probs=50.5

Q ss_pred             CCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHH
Q 020754          130 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKIL  209 (322)
Q Consensus       130 ~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~  209 (322)
                      ++|+.|++++ +.++.     +...+++|+.|.++.+.+.  .          +...+++|+.|+|++|.++  .+...+
T Consensus       221 ~~L~~L~Ls~-N~L~~-----lp~~l~~L~~L~Ls~N~L~--~----------lp~~~~~L~~L~Ls~N~L~--~lp~~l  280 (622)
T 3g06_A          221 SGLKELIVSG-NRLTS-----LPVLPSELKELMVSGNRLT--S----------LPMLPSGLLSLSVYRNQLT--RLPESL  280 (622)
T ss_dssp             TTCCEEECCS-SCCSC-----CCCCCTTCCEEECCSSCCS--C----------CCCCCTTCCEEECCSSCCC--SCCGGG
T ss_pred             CCCCEEEccC-CccCc-----CCCCCCcCcEEECCCCCCC--c----------CCcccccCcEEeCCCCCCC--cCCHHH
Confidence            5666666665 34432     1144566777766555432  1          1115789999999999887  333446


Q ss_pred             hcCCCCCEEeecCCCCc
Q 020754          210 SSCALLEFLDLRGCWDV  226 (322)
Q Consensus       210 ~~~~~L~~L~L~~c~~~  226 (322)
                      .++++|+.|+|++|...
T Consensus       281 ~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          281 IHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             GGSCTTCEEECCSCCCC
T ss_pred             hhccccCEEEecCCCCC
Confidence            68999999999998643

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.45  E-value=2.4e-05  Score=64.55  Aligned_cols=121  Identities=17%  Similarity=0.114  Sum_probs=79.3

Q ss_pred             CEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcC
Q 020754          108 QTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTM  187 (322)
Q Consensus       108 ~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~  187 (322)
                      +.++++++.++..  ..  .-.++|++|++++ +.++.  +......+++|+.|.++.+.+..-       ...++ ..+
T Consensus        13 ~~l~~~~~~l~~i--p~--~~~~~l~~L~L~~-n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i-------~~~~f-~~l   77 (193)
T 2wfh_A           13 TVVRCSNKGLKVL--PK--GIPRDVTELYLDG-NQFTL--VPKELSNYKHLTLIDLSNNRISTL-------SNQSF-SNM   77 (193)
T ss_dssp             TEEECTTSCCSSC--CS--CCCTTCCEEECCS-SCCCS--CCGGGGGCTTCCEEECCSSCCCCC-------CTTTT-TTC
T ss_pred             CEEEcCCCCCCcC--CC--CCCCCCCEEECCC-CcCch--hHHHhhcccCCCEEECCCCcCCEe-------CHhHc-cCC
Confidence            5677777755421  10  1237899999998 56663  212345679999998876655311       11122 378


Q ss_pred             CCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          188 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       188 p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      ++|++|+|++|.++.... ..+.++++|+.|+|++|.... -.......+++|+.|.+
T Consensus        78 ~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L  133 (193)
T 2wfh_A           78 TQLLTLILSYNRLRCIPP-RTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAI  133 (193)
T ss_dssp             TTCCEEECCSSCCCBCCT-TTTTTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCccCEeCH-HHhCCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEe
Confidence            999999999998764322 124578999999999986443 22333457888998865

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.40  E-value=4.6e-05  Score=68.17  Aligned_cols=91  Identities=16%  Similarity=0.106  Sum_probs=52.3

Q ss_pred             CCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCC-EEeec
Q 020754          143 IGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLE-FLDLR  221 (322)
Q Consensus       143 i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~-~L~L~  221 (322)
                      +....+..+...|++|+.|.+..+.+..       -...++ ..|++|+.|.|..+ ++.-+ ...+.+|++|+ .|.+.
T Consensus       213 l~~~~~~~l~~~~~~L~~l~L~~n~i~~-------I~~~aF-~~~~~L~~l~l~~n-i~~I~-~~aF~~~~~L~~~l~l~  282 (329)
T 3sb4_A          213 LDNADFKLIRDYMPNLVSLDISKTNATT-------IPDFTF-AQKKYLLKIKLPHN-LKTIG-QRVFSNCGRLAGTLELP  282 (329)
T ss_dssp             CCHHHHHHHHHHCTTCCEEECTTBCCCE-------ECTTTT-TTCTTCCEEECCTT-CCEEC-TTTTTTCTTCCEEEEEC
T ss_pred             ecHHHHHHHHHhcCCCeEEECCCCCcce-------ecHhhh-hCCCCCCEEECCcc-cceeh-HHHhhCChhccEEEEEc
Confidence            3444555666678889988876443211       111122 36788888888776 22111 11235778888 88887


Q ss_pred             CCCCcCCChHHHHhcCCCCeeeCC
Q 020754          222 GCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       222 ~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      .  .++.-+...+..|++|+.|.+
T Consensus       283 ~--~l~~I~~~aF~~c~~L~~l~l  304 (329)
T 3sb4_A          283 A--SVTAIEFGAFMGCDNLRYVLA  304 (329)
T ss_dssp             T--TCCEECTTTTTTCTTEEEEEE
T ss_pred             c--cceEEchhhhhCCccCCEEEe
Confidence            6  333223344567888888753

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.32  E-value=4.7e-05  Score=73.46  Aligned_cols=39  Identities=8%  Similarity=-0.195  Sum_probs=27.3

Q ss_pred             cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCc
Q 020754          186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  226 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~  226 (322)
                      ..+.|+.|+|++|.|+.  +..-+..+++|+.|+|++|...
T Consensus       205 ~~~~L~~L~Ls~N~l~~--lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          205 SEETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             ---CCEEEECCSSCCCC--CCGGGGGSCTTEEEECCSSSCC
T ss_pred             ccccceEEecCCCccee--cCHHHhcCCCCCEEEeeCCcCC
Confidence            34555999999998873  2222335899999999999644

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.27  E-value=0.00019  Score=62.27  Aligned_cols=90  Identities=23%  Similarity=0.230  Sum_probs=61.1

Q ss_pred             HHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCC
Q 020754          149 EAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKL  228 (322)
Q Consensus       149 ~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~  228 (322)
                      ..+...+|+|+.|.++.+.+.  +.    ..+..+...+|+|+.|+|++|.|++..-..-+..+ +|++|+|++|+....
T Consensus       163 ~i~~~~l~~L~~L~Ls~N~l~--~l----~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~  235 (267)
T 3rw6_A          163 RIIEENIPELLSLNLSNNRLY--RL----DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDT  235 (267)
T ss_dssp             HHHHHHCTTCCEEECTTSCCC--CC----GGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGG
T ss_pred             HHHHhhCCCCCEEECCCCCCC--CC----ccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccc
Confidence            344467899999998877652  11    12223445899999999999998765222222334 999999999974420


Q ss_pred             -C---h--HHHHhcCCCCeeeCC
Q 020754          229 -D---D--KFMKGNFPNLKVLGP  245 (322)
Q Consensus       229 -~---~--~~l~~~~~~Lk~L~~  245 (322)
                       .   .  ..+...+|+|+.|+.
T Consensus       236 ~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          236 FRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             CSSHHHHHHHHHHHCTTCCEESS
T ss_pred             cCcchhHHHHHHHHCcccCeECC
Confidence             1   1  246789999999953

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.27  E-value=1.5e-05  Score=65.63  Aligned_cols=123  Identities=16%  Similarity=0.071  Sum_probs=79.5

Q ss_pred             CEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcC
Q 020754          108 QTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTM  187 (322)
Q Consensus       108 ~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~  187 (322)
                      +.|++++++++..  ..  .-.++|++|++++ +.++.-....+...+++|+.|.++.+.+...       ...++ ..+
T Consensus        11 ~~l~~s~~~l~~i--p~--~~~~~l~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~-~~l   77 (192)
T 1w8a_A           11 TTVDCTGRGLKEI--PR--DIPLHTTELLLND-NELGRISSDGLFGRLPHLVKLELKRNQLTGI-------EPNAF-EGA   77 (192)
T ss_dssp             TEEECTTSCCSSC--CS--CCCTTCSEEECCS-CCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-------CTTTT-TTC
T ss_pred             CEEEcCCCCcCcC--cc--CCCCCCCEEECCC-CcCCccCCccccccCCCCCEEECCCCCCCCc-------CHhHc-CCc
Confidence            6788888755421  11  1235899999998 5665432222345679999998877655311       11122 368


Q ss_pred             CCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          188 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       188 p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      ++|++|+|++|.++.... ..+.++++|++|+|++|...... ......+++|++|.+
T Consensus        78 ~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L  133 (192)
T 1w8a_A           78 SHIQELQLGENKIKEISN-KMFLGLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNL  133 (192)
T ss_dssp             TTCCEEECCSCCCCEECS-SSSTTCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEEC
T ss_pred             ccCCEEECCCCcCCccCH-HHhcCCCCCCEEECCCCcCCeeC-HHHhhcCCCCCEEEe
Confidence            999999999998764321 22346899999999998644321 223456788888865

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.14  E-value=0.00012  Score=68.73  Aligned_cols=15  Identities=13%  Similarity=0.264  Sum_probs=8.1

Q ss_pred             cCCCCCEEEecCccc
Q 020754          186 TMPKLKRLEMAYHVI  200 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i  200 (322)
                      .+++|++|++++|.+
T Consensus       193 ~l~~L~~L~l~~N~l  207 (454)
T 1jl5_A          193 NLPFLTAIYADNNSL  207 (454)
T ss_dssp             TCTTCCEEECCSSCC
T ss_pred             CCCCCCEEECCCCcC
Confidence            455555555555544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.95  E-value=0.00012  Score=65.48  Aligned_cols=81  Identities=21%  Similarity=0.175  Sum_probs=52.9

Q ss_pred             eeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCC--HH---HH--------------HHHHhc--------CCCccEE
Q 020754           83 LRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMS--DS---IV--------------AQIAGR--------LSAVTFL  135 (322)
Q Consensus        83 l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~--~~---~l--------------~~l~~~--------~~~L~~L  135 (322)
                      +++|.+++......+..+...+++|+.|+|+++.+.  ..   .+              ......        |++|+.|
T Consensus        27 l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l  106 (329)
T 3sb4_A           27 ITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKV  106 (329)
T ss_dssp             CSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-
T ss_pred             eeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEE
Confidence            789999886666677777666899999999988554  00   00              112235        8999999


Q ss_pred             eccCCCCCCHHHHHHHHhcCCCcceeecccc
Q 020754          136 DLSYCSKIGAPALEAIGKHCKLLVVLCRNMH  166 (322)
Q Consensus       136 ~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~  166 (322)
                      +|..  .++.-+-.+ ...|++|+.|.+...
T Consensus       107 ~L~~--~i~~I~~~a-F~~~~~L~~l~l~~n  134 (329)
T 3sb4_A          107 ILSE--KIKNIEDAA-FKGCDNLKICQIRKK  134 (329)
T ss_dssp             CBCT--TCCEECTTT-TTTCTTCCEEEBCCS
T ss_pred             ECCc--cccchhHHH-hhcCcccceEEcCCC
Confidence            9986  333211111 257899999988644

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.94  E-value=0.00014  Score=58.64  Aligned_cols=105  Identities=11%  Similarity=-0.006  Sum_probs=57.7

Q ss_pred             CCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhc
Q 020754          107 LQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAST  186 (322)
Q Consensus       107 L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~  186 (322)
                      .+.|+++++.++..  ..  .-.++|++|+|++ +.++.-.... ...+++|+.|.++.+.+.  +.  ..    .....
T Consensus        11 ~~~l~~s~n~l~~i--p~--~~~~~l~~L~L~~-N~i~~~~~~~-~~~l~~L~~L~Ls~N~l~--~l--~~----~~f~~   76 (170)
T 3g39_A           11 GTTVDCSGKSLASV--PT--GIPTTTQVLYLYD-NQITKLEPGV-FDRLTQLTRLDLDNNQLT--VL--PA----GVFDK   76 (170)
T ss_dssp             TTEEECTTSCCSSC--CS--CCCTTCSEEECCS-SCCCCCCTTT-TTTCTTCSEEECCSSCCC--CC--CT----TTTTT
T ss_pred             CCEEEeCCCCcCcc--Cc--cCCCCCcEEEcCC-CcCCccChhh-hcCcccCCEEECCCCCcC--cc--Ch----hhccC
Confidence            45566666544321  00  1125667777766 4444321111 124566777766655432  11  00    11246


Q ss_pred             CCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCc
Q 020754          187 MPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  226 (322)
Q Consensus       187 ~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~  226 (322)
                      +++|++|+|++|.++.-. ...+..+++|+.|+|+++...
T Consensus        77 l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           77 LTQLTQLSLNDNQLKSIP-RGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCCEEECCCCccCEeC-HHHhcCCCCCCEEEeCCCCCC
Confidence            889999999998865321 123457889999999988643

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=96.81  E-value=0.00051  Score=64.32  Aligned_cols=34  Identities=12%  Similarity=0.154  Sum_probs=18.8

Q ss_pred             CCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020754          188 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  224 (322)
Q Consensus       188 p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~  224 (322)
                      ++|++|++++|.++.  +.. +..+++|+.|++++|.
T Consensus       173 ~~L~~L~L~~n~l~~--l~~-~~~l~~L~~L~l~~N~  206 (454)
T 1jl5_A          173 PSLEFIAAGNNQLEE--LPE-LQNLPFLTAIYADNNS  206 (454)
T ss_dssp             TTCCEEECCSSCCSS--CCC-CTTCTTCCEEECCSSC
T ss_pred             ccccEEECcCCcCCc--Ccc-ccCCCCCCEEECCCCc
Confidence            366666666665443  111 3456666666666664

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.80  E-value=0.0002  Score=57.89  Aligned_cols=86  Identities=14%  Similarity=0.030  Sum_probs=49.7

Q ss_pred             CCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHH
Q 020754          130 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKIL  209 (322)
Q Consensus       130 ~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~  209 (322)
                      ++|+.|+|++ +.++.-.. .....+++|+.|.++.+.+.  +.  .    ..+...+++|++|+|++|.++.-. ...+
T Consensus        33 ~~L~~L~Ls~-N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~--~i--~----~~~~~~l~~L~~L~L~~N~l~~l~-~~~~  101 (174)
T 2r9u_A           33 TDKQRLWLNN-NQITKLEP-GVFDHLVNLQQLYFNSNKLT--AI--P----TGVFDKLTQLTQLDLNDNHLKSIP-RGAF  101 (174)
T ss_dssp             TTCSEEECCS-SCCCCCCT-TTTTTCTTCCEEECCSSCCC--CC--C----TTTTTTCTTCCEEECCSSCCCCCC-TTTT
T ss_pred             CCCcEEEeCC-CCccccCH-HHhcCCcCCCEEECCCCCCC--cc--C----hhHhCCcchhhEEECCCCccceeC-HHHh
Confidence            5666666666 44432111 11234566777766555432  11  0    012246889999999998876321 1234


Q ss_pred             hcCCCCCEEeecCCCCc
Q 020754          210 SSCALLEFLDLRGCWDV  226 (322)
Q Consensus       210 ~~~~~L~~L~L~~c~~~  226 (322)
                      ..+++|++|+|++|...
T Consensus       102 ~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A          102 DNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             TTCTTCSEEECCSSCBC
T ss_pred             ccccCCCEEEeCCCCcc
Confidence            56889999999988644

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.78  E-value=0.00017  Score=58.36  Aligned_cols=85  Identities=14%  Similarity=0.089  Sum_probs=39.3

Q ss_pred             CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHH
Q 020754          105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  184 (322)
Q Consensus       105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~  184 (322)
                      ++|+.|+|++|.++... ......+++|+.|+|++ +.++.-. ..+...+++|+.|.++.+.+.  +  +..    ...
T Consensus        33 ~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~-N~l~~i~-~~~~~~l~~L~~L~L~~N~l~--~--l~~----~~~  101 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLE-PGVFDHLVNLQQLYFNS-NKLTAIP-TGVFDKLTQLTQLDLNDNHLK--S--IPR----GAF  101 (174)
T ss_dssp             TTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCS-SCCCCCC-TTTTTTCTTCCEEECCSSCCC--C--CCT----TTT
T ss_pred             CCCcEEEeCCCCccccC-HHHhcCCcCCCEEECCC-CCCCccC-hhHhCCcchhhEEECCCCccc--e--eCH----HHh
Confidence            45666666666443211 11223456666666665 4444211 111234566666665544332  1  000    111


Q ss_pred             hcCCCCCEEEecCccc
Q 020754          185 STMPKLKRLEMAYHVI  200 (322)
Q Consensus       185 ~~~p~L~~L~L~~~~i  200 (322)
                      ..+++|++|+|++|.+
T Consensus       102 ~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A          102 DNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             TTCTTCSEEECCSSCB
T ss_pred             ccccCCCEEEeCCCCc
Confidence            2456666666666654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.63  E-value=0.00025  Score=57.09  Aligned_cols=86  Identities=16%  Similarity=0.159  Sum_probs=45.6

Q ss_pred             CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHH
Q 020754          105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  184 (322)
Q Consensus       105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~  184 (322)
                      ++|+.|+|++|.++... ......+++|++|+|++ +.++.-. ......+++|+.|.++.+.+..  .  ..    ...
T Consensus        30 ~~l~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~-N~l~~l~-~~~f~~l~~L~~L~L~~N~l~~--~--~~----~~~   98 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLE-PGVFDRLTQLTRLDLDN-NQLTVLP-AGVFDKLTQLTQLSLNDNQLKS--I--PR----GAF   98 (170)
T ss_dssp             TTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCS-SCCCCCC-TTTTTTCTTCCEEECCSSCCCC--C--CT----TTT
T ss_pred             CCCcEEEcCCCcCCccC-hhhhcCcccCCEEECCC-CCcCccC-hhhccCCCCCCEEECCCCccCE--e--CH----HHh
Confidence            56777777777554321 11223457777777776 4554211 1122455777777766554421  0  00    112


Q ss_pred             hcCCCCCEEEecCcccC
Q 020754          185 STMPKLKRLEMAYHVIS  201 (322)
Q Consensus       185 ~~~p~L~~L~L~~~~i~  201 (322)
                      ..+++|++|+|++|.++
T Consensus        99 ~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           99 DNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             TTCTTCCEEECCSSCBC
T ss_pred             cCCCCCCEEEeCCCCCC
Confidence            35677777777777653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.30  E-value=2.4e-05  Score=70.72  Aligned_cols=37  Identities=8%  Similarity=0.078  Sum_probs=20.8

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCC
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEM  117 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i  117 (322)
                      ..+++|+|++..-...-......+++|+.|+|++|.+
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i   66 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV   66 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTT
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCC
Confidence            3577787765431111111124577888888887754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=96.15  E-value=0.00054  Score=61.43  Aligned_cols=61  Identities=16%  Similarity=0.081  Sum_probs=25.9

Q ss_pred             hCCCCCEEecCC-CCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeecccc
Q 020754          103 NAGSLQTLRLPR-SEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH  166 (322)
Q Consensus       103 ~~~~L~~L~L~~-~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~  166 (322)
                      .+++|+.|+|++ |.++...- .....+++|+.|+|++ +.++.-...+ ...+++|+.|.|+.+
T Consensus        29 ~~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~-N~l~~~~~~~-~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           29 GAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVK-SGLRFVAPDA-FHFTPRLSRLNLSFN   90 (347)
T ss_dssp             SCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCS-SCCCEECTTG-GGSCSCCCEEECCSS
T ss_pred             CCCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCC-CccceeCHHH-hcCCcCCCEEeCCCC
Confidence            344566666654 44432100 1123345666666665 3443211111 123455555554444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=94.88  E-value=0.00013  Score=65.80  Aligned_cols=11  Identities=36%  Similarity=0.480  Sum_probs=6.9

Q ss_pred             CCeeEEEecCC
Q 020754           81 GSLRKLCVSGL   91 (322)
Q Consensus        81 ~~l~~L~l~~~   91 (322)
                      .+|+.|+|++.
T Consensus        54 ~~L~~L~Ls~N   64 (350)
T 4ay9_X           54 GDLEKIEISQN   64 (350)
T ss_dssp             TTCCEEEEECC
T ss_pred             CCCCEEECcCC
Confidence            45777777654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=94.66  E-value=0.0052  Score=54.87  Aligned_cols=87  Identities=18%  Similarity=0.097  Sum_probs=37.1

Q ss_pred             hcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHH
Q 020754          127 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL  206 (322)
Q Consensus       127 ~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~  206 (322)
                      ..+++|+.|+|++++.++.-.... ...+++|+.|.|+.+.+.  +.      .......+++|++|+|++|.++.-. .
T Consensus        28 ~~~~~L~~L~l~~~n~l~~~~~~~-~~~l~~L~~L~l~~N~l~--~~------~~~~~~~l~~L~~L~l~~N~l~~~~-~   97 (347)
T 2ifg_A           28 PGAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKSGLR--FV------APDAFHFTPRLSRLNLSFNALESLS-W   97 (347)
T ss_dssp             CSCSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSSCCC--EE------CTTGGGSCSCCCEEECCSSCCSCCC-S
T ss_pred             CCCCCeeEEEccCCCCCCCcChhH-hccccCCCEEECCCCccc--ee------CHHHhcCCcCCCEEeCCCCccceeC-H
Confidence            344556666665434443211111 123556666655544331  10      0001124566666666666543210 1


Q ss_pred             HHHhcCCCCCEEeecCCC
Q 020754          207 KILSSCALLEFLDLRGCW  224 (322)
Q Consensus       207 ~i~~~~~~L~~L~L~~c~  224 (322)
                      .++..++ |+.|+|.++.
T Consensus        98 ~~~~~~~-L~~l~l~~N~  114 (347)
T 2ifg_A           98 KTVQGLS-LQELVLSGNP  114 (347)
T ss_dssp             TTTCSCC-CCEEECCSSC
T ss_pred             HHcccCC-ceEEEeeCCC
Confidence            1112222 6666666553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=93.65  E-value=0.011  Score=54.18  Aligned_cols=57  Identities=7%  Similarity=0.004  Sum_probs=24.7

Q ss_pred             hCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeecc
Q 020754          103 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN  164 (322)
Q Consensus       103 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~  164 (322)
                      .|++|+.+.|+.+.++.-.-.++  .+.+|+.+.|..  .++.-+-. ....|++|+.+.+.
T Consensus       178 ~c~~L~~l~l~~n~l~~I~~~aF--~~~~L~~l~lp~--~l~~I~~~-aF~~~~~L~~l~l~  234 (401)
T 4fdw_A          178 YCYNLKKADLSKTKITKLPASTF--VYAGIEEVLLPV--TLKEIGSQ-AFLKTSQLKTIEIP  234 (401)
T ss_dssp             TCTTCCEEECTTSCCSEECTTTT--TTCCCSEEECCT--TCCEECTT-TTTTCTTCCCEECC
T ss_pred             CcccCCeeecCCCcceEechhhE--eecccCEEEeCC--chheehhh-HhhCCCCCCEEecC
Confidence            46666666666543322111111  135566666543  12111111 11356666666653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=90.38  E-value=0.043  Score=50.28  Aligned_cols=143  Identities=13%  Similarity=0.128  Sum_probs=72.2

Q ss_pred             cCCCeeEEEecCCC----ChHHHHHHHHhCCCCCEEecCCC--CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHH
Q 020754           79 SSGSLRKLCVSGLH----NDMMFSLIAENAGSLQTLRLPRS--EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIG  152 (322)
Q Consensus        79 ~~~~l~~L~l~~~~----~~~~l~~l~~~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~  152 (322)
                      .|..|+.+.+....    ....+     .+.+|+.+.|+.+  .|...    ....|++|+.+.+..  .++.-+-.++.
T Consensus       178 ~c~~L~~l~l~~n~l~~I~~~aF-----~~~~L~~l~lp~~l~~I~~~----aF~~~~~L~~l~l~~--~l~~I~~~aF~  246 (401)
T 4fdw_A          178 YCYNLKKADLSKTKITKLPASTF-----VYAGIEEVLLPVTLKEIGSQ----AFLKTSQLKTIEIPE--NVSTIGQEAFR  246 (401)
T ss_dssp             TCTTCCEEECTTSCCSEECTTTT-----TTCCCSEEECCTTCCEECTT----TTTTCTTCCCEECCT--TCCEECTTTTT
T ss_pred             CcccCCeeecCCCcceEechhhE-----eecccCEEEeCCchheehhh----HhhCCCCCCEEecCC--CccCccccccc
Confidence            35667888775421    12222     2578888888865  33332    224578888888864  22221112222


Q ss_pred             hcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHH----HHHHHhcCCCCCEEeecCCCCcCC
Q 020754          153 KHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEI----VLKILSSCALLEFLDLRGCWDVKL  228 (322)
Q Consensus       153 ~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~----l~~i~~~~~~L~~L~L~~c~~~~~  228 (322)
                      .  .+|+.+.+......+        +..++ ..|++|+.+.+.++.+....    -...+.+|++|+.+.|...  ++.
T Consensus       247 ~--~~L~~i~lp~~i~~I--------~~~aF-~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~  313 (401)
T 4fdw_A          247 E--SGITTVKLPNGVTNI--------ASRAF-YYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRI  313 (401)
T ss_dssp             T--CCCSEEEEETTCCEE--------CTTTT-TTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCE
T ss_pred             c--CCccEEEeCCCccEE--------ChhHh-hCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEE
Confidence            2  467777663221111        11122 25777777777665432000    0112346777777777642  321


Q ss_pred             ChHHHHhcCCCCeeeCC
Q 020754          229 DDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       229 ~~~~l~~~~~~Lk~L~~  245 (322)
                      -+...+..|++|+.+.+
T Consensus       314 I~~~aF~~c~~L~~l~l  330 (401)
T 4fdw_A          314 LGQGLLGGNRKVTQLTI  330 (401)
T ss_dssp             ECTTTTTTCCSCCEEEE
T ss_pred             EhhhhhcCCCCccEEEE
Confidence            22334456777776643

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=85.88  E-value=0.26  Score=44.61  Aligned_cols=33  Identities=12%  Similarity=0.255  Sum_probs=18.7

Q ss_pred             hCCCCCEEecCCC--CCCHHHHHHHHhcCCCccEEeccC
Q 020754          103 NAGSLQTLRLPRS--EMSDSIVAQIAGRLSAVTFLDLSY  139 (322)
Q Consensus       103 ~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~l~~  139 (322)
                      .+.+|+.+.++..  .+...    ....|++|+.+.+..
T Consensus       228 ~~~~l~~i~ip~~~~~i~~~----~f~~~~~l~~~~~~~  262 (394)
T 4fs7_A          228 SKTGVKNIIIPDSFTELGKS----VFYGCTDLESISIQN  262 (394)
T ss_dssp             TTCCCCEEEECTTCCEECSS----TTTTCSSCCEEEECC
T ss_pred             ccCCCceEEECCCceecccc----cccccccceeEEcCC
Confidence            3567788877664  22221    223467777777654

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=84.78  E-value=0.89  Score=41.01  Aligned_cols=54  Identities=17%  Similarity=0.173  Sum_probs=28.6

Q ss_pred             cCCCCCEEEecCc--ccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          186 TMPKLKRLEMAYH--VISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       186 ~~p~L~~L~L~~~--~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      .|++|+.+.|..+  .|.+.+    +.+|.+|+.+.|...  ++.-+......|++|+.+..
T Consensus       309 ~c~~L~~i~lp~~v~~I~~~a----F~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~  364 (394)
T 4gt6_A          309 GCISLKSIDIPEGITQILDDA----FAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEY  364 (394)
T ss_dssp             TCTTCCEEECCTTCCEECTTT----TTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEE
T ss_pred             CCCCcCEEEeCCcccEehHhH----hhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEE
Confidence            5666777766543  133222    346677777776432  22223344466777776643

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=83.34  E-value=1.3  Score=39.81  Aligned_cols=54  Identities=13%  Similarity=0.220  Sum_probs=29.4

Q ss_pred             cCCCCCEEEecCc--ccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          186 TMPKLKRLEMAYH--VISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       186 ~~p~L~~L~L~~~--~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      .|++|+.+.+...  .|.+.    .+.+|.+|+.+.|...  ++.-+......|.+|+.+.+
T Consensus       286 ~c~~L~~i~l~~~i~~I~~~----aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~i  341 (394)
T 4gt6_A          286 NCPALQDIEFSSRITELPES----VFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAI  341 (394)
T ss_dssp             TCTTCCEEECCTTCCEECTT----TTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEE
T ss_pred             cccccccccCCCcccccCce----eecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEE
Confidence            5677777777543  13322    2346777777777542  22122334467777777653

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=82.03  E-value=0.58  Score=42.28  Aligned_cols=120  Identities=12%  Similarity=0.069  Sum_probs=68.2

Q ss_pred             HhCCCCCEEecCCC--CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchH
Q 020754          102 ENAGSLQTLRLPRS--EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDE  179 (322)
Q Consensus       102 ~~~~~L~~L~L~~~--~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~  179 (322)
                      ..|.+|+.+.++.+  .+...    ....|+.|+.+.+.. ..+...    ....|++|+.+.+......+        +
T Consensus       250 ~~~~~l~~~~~~~~~~~i~~~----~F~~~~~l~~~~~~~-~~i~~~----~F~~~~~L~~i~l~~~i~~I--------~  312 (394)
T 4fs7_A          250 YGCTDLESISIQNNKLRIGGS----LFYNCSGLKKVIYGS-VIVPEK----TFYGCSSLTEVKLLDSVKFI--------G  312 (394)
T ss_dssp             TTCSSCCEEEECCTTCEECSC----TTTTCTTCCEEEECS-SEECTT----TTTTCTTCCEEEECTTCCEE--------C
T ss_pred             cccccceeEEcCCCcceeecc----ccccccccceeccCc-eeeccc----ccccccccccccccccccee--------c
Confidence            45888999999876  22221    223567777777765 333332    23467788888763221111        1


Q ss_pred             HHHHHhcCCCCCEEEecCc--ccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          180 ANAIASTMPKLKRLEMAYH--VISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       180 ~~~l~~~~p~L~~L~L~~~--~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      ..++ ..|++|+.+.|...  .|...+    +.+|.+|+.+.+..+  ++.-+......|++|+.+.+
T Consensus       313 ~~aF-~~c~~L~~i~lp~~v~~I~~~a----F~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          313 EEAF-ESCTSLVSIDLPYLVEEIGKRS----FRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVEL  373 (394)
T ss_dssp             TTTT-TTCTTCCEECCCTTCCEECTTT----TTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEE
T ss_pred             hhhh-cCCCCCCEEEeCCcccEEhHHh----ccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEE
Confidence            1122 36788888888653  133222    347888888888653  32123344578888888754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=80.15  E-value=0.6  Score=41.81  Aligned_cols=57  Identities=18%  Similarity=0.208  Sum_probs=34.0

Q ss_pred             cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      .|++|+.+.+..+.++.-+- ..+.+|.+|+.+.|...  ++.-+......|++|+.+.+
T Consensus       284 ~c~~L~~i~l~~~~i~~I~~-~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~i  340 (379)
T 4h09_A          284 GCSNLTKVVMDNSAIETLEP-RVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISY  340 (379)
T ss_dssp             TCTTCCEEEECCTTCCEECT-TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCC
T ss_pred             cccccccccccccccceehh-hhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEE
Confidence            67888888887654332111 12347888888888542  32123334567888887754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	322
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.85
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.76
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.43
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.09
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.06
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	99.0
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.97
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.95
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.95
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.91
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.87
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.81
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.79
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.68
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.66
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.65
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.54
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.46
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.37
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.37
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.3
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.26
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.17
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.0
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.98
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.96
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.93
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.83
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.66
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.64
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.61
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.58
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.53
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.37
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.35
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.21
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	96.98
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	96.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	96.32
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.17
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.14
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	95.6
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	95.29
d2ifga3	156	High affinity nerve growth factor receptor, N-term	94.21
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	93.85

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.8e-20  Score=164.39  Aligned_cols=195  Identities=23%  Similarity=0.236  Sum_probs=150.3

Q ss_pred             ceeeeccccccccCChhHHHHHHHHHHH--h--------------cCCCeeEEEecCCC-ChHHHHHHHHhCCCCCEEec
Q 020754           50 CWQEIDIEEWSNRCQPDHLDRMVEMLIT--R--------------SSGSLRKLCVSGLH-NDMMFSLIAENAGSLQTLRL  112 (322)
Q Consensus        50 lw~~i~l~~~~~~~~~~~~~~~l~~l~~--r--------------~~~~l~~L~l~~~~-~~~~l~~l~~~~~~L~~L~L  112 (322)
                      +|+++|+.....  .+..+.+++.....  |              ....+++|+++++. +...+..+..+|++|++|+|
T Consensus         1 LW~~lDLs~~~l--~~~~l~~l~~~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L   78 (284)
T d2astb2           1 LWQTLDLTGKNL--HPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL   78 (284)
T ss_dssp             TSSEEECTTCBC--CHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred             CcCEEECCCCCC--CchHHHHHHhccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccc
Confidence            699999986543  45655555442111  0              12358889998865 57778888999999999999


Q ss_pred             CCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHH-HHHhcCCCCC
Q 020754          113 PRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN-AIASTMPKLK  191 (322)
Q Consensus       113 ~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~-~l~~~~p~L~  191 (322)
                      .+|.+++..+..++ ++++|++|++++|..+++.++.++++.||+|++|+++.+.      .+.+.++. .++..+++|+
T Consensus        79 ~~~~l~~~~~~~l~-~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~------~~~~~~~~~~~~~~~~~L~  151 (284)
T d2astb2          79 EGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF------DFTEKHVQVAVAHVSETIT  151 (284)
T ss_dssp             TTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT------TCCHHHHHHHHHHSCTTCC
T ss_pred             cccCCCcHHHHHHh-cCCCCcCccccccccccccccchhhHHHHhcccccccccc------ccccccchhhhcccccccc
Confidence            99999999888875 5799999999999999999999999999999999765432      13445554 4555678999


Q ss_pred             EEEecCc--ccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCCcccCcccccccccCCCCCC
Q 020754          192 RLEMAYH--VISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVMDYYEINDWDDCSDYSD  264 (322)
Q Consensus       192 ~L~L~~~--~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~~~~~~~~~~d~~~c~~~td  264 (322)
                      +|+++++  .+++.++..++..||+|++|++++|..++.........+++|++|.+           ..|..++|
T Consensus       152 ~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L-----------~~C~~i~~  215 (284)
T d2astb2         152 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL-----------SRCYDIIP  215 (284)
T ss_dssp             EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC-----------TTCTTCCG
T ss_pred             hhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEEC-----------CCCCCCCh
Confidence            9999986  58999999999999999999999998886444333457888888843           56666665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.6e-18  Score=151.89  Aligned_cols=217  Identities=18%  Similarity=0.310  Sum_probs=154.7

Q ss_pred             ccCCHHHHHHHHccCChHHHhhhhhhhhHH--HHHHhcCCCceeeeccccccccCChhHHHHHHHHHHHhcCCCeeEEEe
Q 020754           11 DELIPDALGLIFRNLSLQEVLTVIPGVCKS--WRRAVIGPYCWQEIDIEEWSNRCQPDHLDRMVEMLITRSSGSLRKLCV   88 (322)
Q Consensus        11 ~~LP~eiL~~IF~~L~~~~~l~~~~~VCk~--W~~~~~~~~lw~~i~l~~~~~~~~~~~~~~~l~~l~~r~~~~l~~L~l   88 (322)
                      ..++++++..|++.-..  .++ +++.+..  +..... +.--+.+++.....  ...    .+..+ ...++++++|++
T Consensus        10 ~~l~~~~l~~l~~~~~~--~lr-l~~~~~~~~~~~~~~-~~~L~~LdLs~~~i--~~~----~l~~l-~~~c~~L~~L~L   78 (284)
T d2astb2          10 KNLHPDVTGRLLSQGVI--AFR-CPRSFMDQPLAEHFS-PFRVQHMDLSNSVI--EVS----TLHGI-LSQCSKLQNLSL   78 (284)
T ss_dssp             CBCCHHHHHHHHHTTCS--EEE-CTTCEECSCCCSCCC-CBCCCEEECTTCEE--CHH----HHHHH-HTTBCCCSEEEC
T ss_pred             CCCCchHHHHHHhccce--Eee-ccccccccchhhhcc-CCCCCEEECCCCcc--CHH----HHHHH-HHhCCCcccccc
Confidence            46889999998875221  111 1222211  111111 22234555553221  222    23333 334678999999


Q ss_pred             cCCC-ChHHHHHHHHhCCCCCEEecCCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHH-HHHhcCCCcceeeccc
Q 020754           89 SGLH-NDMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALE-AIGKHCKLLVVLCRNM  165 (322)
Q Consensus        89 ~~~~-~~~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~-~l~~~c~~L~~L~l~~  165 (322)
                      +++. ++..+..++ .+++|++|+|++| .+++.++..++..||+|++|++++|..+++.++. .++..|++|+.|.++.
T Consensus        79 ~~~~l~~~~~~~l~-~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~  157 (284)
T d2astb2          79 EGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG  157 (284)
T ss_dssp             TTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred             cccCCCcHHHHHHh-cCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcc
Confidence            9986 566666665 5899999999998 9999999999999999999999999999998885 5666789999998753


Q ss_pred             cccCCCCCCCCchHHHHHHhcCCCCCEEEecCcc-cCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeC
Q 020754          166 HPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  244 (322)
Q Consensus       166 ~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~-i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~  244 (322)
                      +..     .+.+.++..++..||+|++|+|++|. +++.++..+. .|++|++|+|++|..++..+-.....+|+|+.|.
T Consensus       158 ~~~-----~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~-~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~  231 (284)
T d2astb2         158 YRK-----NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ  231 (284)
T ss_dssp             CGG-----GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             ccc-----ccccccccccccccccccccccccccCCCchhhhhhc-ccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEe
Confidence            321     24567788888899999999999974 8888776665 6999999999999988644333346789999985


Q ss_pred             C
Q 020754          245 P  245 (322)
Q Consensus       245 ~  245 (322)
                      .
T Consensus       232 l  232 (284)
T d2astb2         232 V  232 (284)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.2e-14  Score=85.72  Aligned_cols=41  Identities=41%  Similarity=0.776  Sum_probs=39.5

Q ss_pred             cccCCHHHHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCce
Q 020754           10 WDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCW   51 (322)
Q Consensus        10 w~~LP~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw   51 (322)
                      |+.||+||+.+||+||+.+++.+ +++|||+|+.++.++.+|
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~-~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLK-VSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHH-HHTTCHHHHHHHTCGGGC
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHhCCcccC
Confidence            78999999999999999999998 799999999999999988

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.09  E-value=2.5e-09  Score=94.71  Aligned_cols=181  Identities=16%  Similarity=0.201  Sum_probs=122.0

Q ss_pred             eeeccccccccCChhHHHHHHHHHHHhcCCCeeEEEecCCC-ChHHHHH------------HHHhCCCCCEEecCCCCCC
Q 020754           52 QEIDIEEWSNRCQPDHLDRMVEMLITRSSGSLRKLCVSGLH-NDMMFSL------------IAENAGSLQTLRLPRSEMS  118 (322)
Q Consensus        52 ~~i~l~~~~~~~~~~~~~~~l~~l~~r~~~~l~~L~l~~~~-~~~~l~~------------l~~~~~~L~~L~L~~~~i~  118 (322)
                      +.+++.....  .......+...+.  ....+++|+++++. .+.....            .....+.|+.+.+.++.++
T Consensus        96 ~~L~L~~n~i--~~~~~~~l~~~l~--~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~  171 (344)
T d2ca6a1          96 HTVRLSDNAF--GPTAQEPLIDFLS--KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  171 (344)
T ss_dssp             CEEECCSCCC--CTTTHHHHHHHHH--HCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             cccccccccc--ccccccchhhhhc--ccccchheecccccccccccccccccccccccccccccCcccceeeccccccc
Confidence            4566664432  3333444444332  25679999998764 3222111            2245789999999999888


Q ss_pred             HHHHHHH---HhcCCCccEEeccCCCCCCHHHHHHH----HhcCCCcceeeccccccCCCCCCCCchHHHHHH---hcCC
Q 020754          119 DSIVAQI---AGRLSAVTFLDLSYCSKIGAPALEAI----GKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMP  188 (322)
Q Consensus       119 ~~~l~~l---~~~~~~L~~L~l~~c~~i~~~~l~~l----~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~---~~~p  188 (322)
                      +.++..+   ...++.|+.|+++. +.+++.++..+    ...+++|+.|+++.+.       +.+.++.+++   +.++
T Consensus       172 ~~~~~~l~~~l~~~~~L~~L~L~~-n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-------i~~~g~~~L~~~l~~~~  243 (344)
T d2ca6a1         172 NGSMKEWAKTFQSHRLLHTVKMVQ-NGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-------FTHLGSSALAIALKSWP  243 (344)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCS-SCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-------CHHHHHHHHHHHGGGCT
T ss_pred             ccccccccchhhhhhhhccccccc-ccccccccccchhhhhcchhhhccccccccc-------ccccccccccccccccc
Confidence            7666554   34578999999999 57888775432    3467899999765443       4445554443   5789


Q ss_pred             CCCEEEecCcccCHHHHHHHHhc-----CCCCCEEeecCCCCcCCCh-----HHHHhcCCCCeeeCC
Q 020754          189 KLKRLEMAYHVISTEIVLKILSS-----CALLEFLDLRGCWDVKLDD-----KFMKGNFPNLKVLGP  245 (322)
Q Consensus       189 ~L~~L~L~~~~i~~~~l~~i~~~-----~~~L~~L~L~~c~~~~~~~-----~~l~~~~~~Lk~L~~  245 (322)
                      +|++|+|++|.|++.++..++..     .+.|++|++++|. ++..+     ..+...++.|++|.+
T Consensus       244 ~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l  309 (344)
T d2ca6a1         244 NLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLEL  309 (344)
T ss_dssp             TCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             cchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEEC
Confidence            99999999999999998888753     3679999999985 64333     123346788988844

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.06  E-value=4.9e-09  Score=92.71  Aligned_cols=157  Identities=13%  Similarity=0.090  Sum_probs=110.1

Q ss_pred             CCCeeEEEecCCC-C---hHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHh------------cCCCccEEeccCCCCC
Q 020754           80 SGSLRKLCVSGLH-N---DMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAG------------RLSAVTFLDLSYCSKI  143 (322)
Q Consensus        80 ~~~l~~L~l~~~~-~---~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~------------~~~~L~~L~l~~c~~i  143 (322)
                      ++.|+.|+++++. +   ...+......+++|++|.+++|.+++.+...++.            ..+.|+.|.+++ +.+
T Consensus        92 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~-n~i  170 (344)
T d2ca6a1          92 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR-NRL  170 (344)
T ss_dssp             CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS-SCC
T ss_pred             CCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeeccc-ccc
Confidence            5679999998754 2   2344445567899999999999888766554433            468899999998 688


Q ss_pred             CHHHHHHHH---hcCCCcceeeccccccCCCCCCCCchHHHH-H---HhcCCCCCEEEecCcccCHHHHHHHH---hcCC
Q 020754          144 GAPALEAIG---KHCKLLVVLCRNMHPLDTADKLSQDDEANA-I---ASTMPKLKRLEMAYHVISTEIVLKIL---SSCA  213 (322)
Q Consensus       144 ~~~~l~~l~---~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~-l---~~~~p~L~~L~L~~~~i~~~~l~~i~---~~~~  213 (322)
                      ++.++..++   +.++.|+.|.+..+       .+.+.++.. +   ...+++|++|+|++|.+++.+..++.   ..++
T Consensus       171 ~~~~~~~l~~~l~~~~~L~~L~L~~n-------~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~  243 (344)
T d2ca6a1         171 ENGSMKEWAKTFQSHRLLHTVKMVQN-------GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWP  243 (344)
T ss_dssp             TGGGHHHHHHHHHHCTTCCEEECCSS-------CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred             cccccccccchhhhhhhhcccccccc-------cccccccccchhhhhcchhhhcccccccccccccccccccccccccc
Confidence            887766553   45788999976544       344454432 2   34689999999999999888766664   5789


Q ss_pred             CCCEEeecCCCCcCCCh-HHHH---h--cCCCCeeeCC
Q 020754          214 LLEFLDLRGCWDVKLDD-KFMK---G--NFPNLKVLGP  245 (322)
Q Consensus       214 ~L~~L~L~~c~~~~~~~-~~l~---~--~~~~Lk~L~~  245 (322)
                      +|++|+|++|. ++..+ ..+.   .  ..+.|++|.+
T Consensus       244 ~L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~l  280 (344)
T d2ca6a1         244 NLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRL  280 (344)
T ss_dssp             TCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEEC
T ss_pred             cchhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEEC
Confidence            99999999995 53222 2221   2  3467888864

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=1.2e-10  Score=84.50  Aligned_cols=49  Identities=20%  Similarity=0.401  Sum_probs=43.7

Q ss_pred             cccCCHHHHHHHHccCChHHHhhhhhhhhHHHHHHhc-CCCceeeeccccc
Q 020754           10 WDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVI-GPYCWQEIDIEEW   59 (322)
Q Consensus        10 w~~LP~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~-~~~lw~~i~l~~~   59 (322)
                      +..||+||+.+||+||+..++.+ |++|||+|+.++. ++.+|+++.+...
T Consensus         6 ~~~LP~Ell~~I~s~Ld~~dL~~-~s~Vcr~W~~~~~~d~~LWr~l~~~~~   55 (100)
T d1nexb1           6 ITSLPFEISLKIFNYLQFEDIIN-SLGVSQNWNKIIRKSTSLWKKLLISEN   55 (100)
T ss_dssp             HHHSCHHHHHHHHTTSCHHHHHH-HTTTCHHHHHHHHTCSHHHHHHHHHTT
T ss_pred             hhhCCHHHHHHHHHCCCHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHcC
Confidence            56899999999999999999998 8999999999874 6899999876653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.3e-08  Score=92.31  Aligned_cols=136  Identities=18%  Similarity=0.132  Sum_probs=79.3

Q ss_pred             CCCeeEEEecCCCC-hHH---HHHHHHhCCCCCEEecCCCCCCHHHHHHHHhc----CCCccEEeccCCCCCCHHHHHHH
Q 020754           80 SGSLRKLCVSGLHN-DMM---FSLIAENAGSLQTLRLPRSEMSDSIVAQIAGR----LSAVTFLDLSYCSKIGAPALEAI  151 (322)
Q Consensus        80 ~~~l~~L~l~~~~~-~~~---l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~----~~~L~~L~l~~c~~i~~~~l~~l  151 (322)
                      ...++.++++++.. ...   ........+.++.+.+.++.+++.++..++..    .+.|+.+.+++| .++..++..+
T Consensus       254 ~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~-~l~~~~~~~l  332 (460)
T d1z7xw1         254 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHF  332 (460)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc-chhhhhhhhc
Confidence            45577777766532 221   22223456777777777777777666655432    346777777764 5665554444


Q ss_pred             H---hcCCCcceeeccccccCCCCCCCCchHHHHHH----hcCCCCCEEEecCcccCHHHHHHHH---hcCCCCCEEeec
Q 020754          152 G---KHCKLLVVLCRNMHPLDTADKLSQDDEANAIA----STMPKLKRLEMAYHVISTEIVLKIL---SSCALLEFLDLR  221 (322)
Q Consensus       152 ~---~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~----~~~p~L~~L~L~~~~i~~~~l~~i~---~~~~~L~~L~L~  221 (322)
                      +   ..+++|++|+++.+.       +.+.++..++    ...+.|++|+|++|.|++.++.+++   ..+++|++|+|+
T Consensus       333 ~~~~~~~~~L~~L~Ls~N~-------i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls  405 (460)
T d1z7xw1         333 SSVLAQNRFLLELQISNNR-------LEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLS  405 (460)
T ss_dssp             HHHHHHCSSCCEEECCSSB-------CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECC
T ss_pred             ccccccccchhhhheeeec-------ccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECC
Confidence            3   355677777654332       3344444443    2345677777777777776655543   346777777777


Q ss_pred             CC
Q 020754          222 GC  223 (322)
Q Consensus       222 ~c  223 (322)
                      ++
T Consensus       406 ~N  407 (460)
T d1z7xw1         406 NN  407 (460)
T ss_dssp             SS
T ss_pred             CC
Confidence            76

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.95  E-value=1.1e-08  Score=81.02  Aligned_cols=123  Identities=12%  Similarity=0.102  Sum_probs=93.6

Q ss_pred             hHHHHHHHHhCCCCCEEecCCC-CCCHHHHHHHHh---cCCCccEEeccCCCCCCHHHHHHHHh---cCCCcceeecccc
Q 020754           94 DMMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAG---RLSAVTFLDLSYCSKIGAPALEAIGK---HCKLLVVLCRNMH  166 (322)
Q Consensus        94 ~~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~---~~~~L~~L~l~~c~~i~~~~l~~l~~---~c~~L~~L~l~~~  166 (322)
                      +..+..+..+.|+|++|+|.++ .+++.++..++.   ..++|++|++++ +.+++.++.+++.   ..+.|+.+.+   
T Consensus         6 ~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~-n~l~~~~~~~L~~~l~~~~~l~~l~l---   81 (166)
T d1io0a_           6 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVG-TRSNDPVAFALAEMLKVNNTLKSLNV---   81 (166)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTT-SCCCHHHHHHHHHHHHHCSSCCEEEC---
T ss_pred             HHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccC-CcccHHHHHHHHHHHhhcccchhhhh---
Confidence            5667788888999999999985 799999887776   568899999999 4888888776655   4577888754   


Q ss_pred             ccCCCCCCCCchHHHHHH---hcCCCCCEEEec--CcccCHHHHHHHHh---cCCCCCEEeecCCC
Q 020754          167 PLDTADKLSQDDEANAIA---STMPKLKRLEMA--YHVISTEIVLKILS---SCALLEFLDLRGCW  224 (322)
Q Consensus       167 ~l~~~~~~~~~~~~~~l~---~~~p~L~~L~L~--~~~i~~~~l~~i~~---~~~~L~~L~L~~c~  224 (322)
                          .++.+.++++..++   ...++|+.++|.  ++.+++.+..+++.   .++.|+.|++..+.
T Consensus        82 ----~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          82 ----ESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             ----CSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             ----ccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence                44555667776665   346889887665  56788887666654   78999999997653

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=7.5e-10  Score=100.84  Aligned_cols=122  Identities=12%  Similarity=0.169  Sum_probs=95.8

Q ss_pred             CeeEEEecCC-CChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHH---hcCCCccEEeccCCCCCCHHHHHHHHhcC--
Q 020754           82 SLRKLCVSGL-HNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIA---GRLSAVTFLDLSYCSKIGAPALEAIGKHC--  155 (322)
Q Consensus        82 ~l~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~---~~~~~L~~L~l~~c~~i~~~~l~~l~~~c--  155 (322)
                      .|+.|++++- .++..+..+...+++++.|+|.+|++++.++..++   ..+|+|++|+|++ +.+++.++..+++.+  
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~-N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS-NELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTT-CCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcC-CcCChHHHHHHHHHHhc
Confidence            4788999763 36777788888899999999999999998877665   5689999999998 689999988887754  


Q ss_pred             --CCcceeeccccccCCCCCCCCchHHHHHH---hcCCCCCEEEecCcccCHHHHHHHHhc
Q 020754          156 --KLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHVISTEIVLKILSS  211 (322)
Q Consensus       156 --~~L~~L~l~~~~l~~~~~~~~~~~~~~l~---~~~p~L~~L~L~~~~i~~~~l~~i~~~  211 (322)
                        ++|++|.++       ++.+++.++..++   ..+++|++|+|++|.+++.++..+...
T Consensus        82 ~~~~L~~L~L~-------~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~  135 (460)
T d1z7xw1          82 PSCKIQKLSLQ-------NCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEG  135 (460)
T ss_dssp             TTCCCCEEECT-------TSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred             CCCCCCEEECC-------CCCccccccccccchhhccccccccccccccchhhhhhhhhhc
Confidence              468888665       4444555555443   468899999999999988887766653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.1e-10  Score=92.57  Aligned_cols=128  Identities=17%  Similarity=0.155  Sum_probs=85.9

Q ss_pred             hCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHH
Q 020754          103 NAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANA  182 (322)
Q Consensus       103 ~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~  182 (322)
                      ++.+|++|+|++|.|+.-  ..+...+++|++|+|++ +.++.-  .. ...+++|+.|.++.+.+..-        ...
T Consensus        16 n~~~lr~L~L~~n~I~~i--~~~~~~l~~L~~L~Ls~-N~i~~l--~~-~~~l~~L~~L~ls~N~i~~l--------~~~   81 (162)
T d1a9na_          16 NAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSD-NEIRKL--DG-FPLLRRLKTLLVNNNRICRI--------GEG   81 (162)
T ss_dssp             CTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCS-SCCCEE--CC-CCCCSSCCEEECCSSCCCEE--------CSC
T ss_pred             CcCcCcEEECCCCCCCcc--CccccccccCCEEECCC-CCCCcc--CC-cccCcchhhhhcccccccCC--------Ccc
Confidence            355788888888866542  33445678889999888 566542  11 24678888887776654210        012


Q ss_pred             HHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCCh--HHHHhcCCCCeeeC
Q 020754          183 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLG  244 (322)
Q Consensus       183 l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~--~~l~~~~~~Lk~L~  244 (322)
                      +...+|+|++|++++|.|++-.-...+..+|+|++|++++|......+  ..+...+|+|++|+
T Consensus        82 ~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          82 LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            334689999999999987653322335678999999999986544333  23567889999984

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.87  E-value=1.4e-08  Score=80.36  Aligned_cols=121  Identities=7%  Similarity=0.113  Sum_probs=76.4

Q ss_pred             HHHHHHHHhCCCCCEEecCCC-CCCHHHHHHHHhc---CCCccEEeccCCCCCCHHHHHHHHh---cCCCcceeeccccc
Q 020754           95 MMFSLIAENAGSLQTLRLPRS-EMSDSIVAQIAGR---LSAVTFLDLSYCSKIGAPALEAIGK---HCKLLVVLCRNMHP  167 (322)
Q Consensus        95 ~~l~~l~~~~~~L~~L~L~~~-~i~~~~l~~l~~~---~~~L~~L~l~~c~~i~~~~l~~l~~---~c~~L~~L~l~~~~  167 (322)
                      ..+..+..+.++|++|+|+++ .+++.++..++..   .++|++|+|++ +.+++.++.+++.   .++.|++|.++   
T Consensus         5 ~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~-n~l~~~~~~~la~~L~~n~~L~~L~L~---   80 (167)
T d1pgva_           5 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN-TAISDSEARGLIELIETSPSLRVLNVE---   80 (167)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT-SCCBHHHHTTHHHHHHHCSSCCEEECC---
T ss_pred             HHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccc-cccchhHHHHHhhhhhhcccccceeee---
Confidence            456666677778888888765 6777776665543   46688888887 4677766655443   45667777543   


Q ss_pred             cCCCCCCCCchHHHHHHh---cCCCCCEEEecCcc---cCHHHHHHHH---hcCCCCCEEeecCC
Q 020754          168 LDTADKLSQDDEANAIAS---TMPKLKRLEMAYHV---ISTEIVLKIL---SSCALLEFLDLRGC  223 (322)
Q Consensus       168 l~~~~~~~~~~~~~~l~~---~~p~L~~L~L~~~~---i~~~~l~~i~---~~~~~L~~L~L~~c  223 (322)
                          ++.+.+.++..++.   ..+.|++|+|+++.   +++++..+++   ...+.|+.|+++.+
T Consensus        81 ----~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          81 ----SNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             ----SSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             ----hhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence                33444566555543   34668888887653   5555544443   45677888877654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.81  E-value=3.3e-08  Score=78.25  Aligned_cols=120  Identities=13%  Similarity=0.199  Sum_probs=89.0

Q ss_pred             HHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHh---cCCCcceeeccccccCCCCCCCCchHHHHHH---hcCCCCCE
Q 020754          119 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGK---HCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKR  192 (322)
Q Consensus       119 ~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~---~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~---~~~p~L~~  192 (322)
                      ++.+..+....|+|++|+|+++..+++.++..+++   .+++|++|.++.       +.+.+.++.+++   +..+.|++
T Consensus         4 ~~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~-------n~l~~~~~~~la~~L~~n~~L~~   76 (167)
T d1pgva_           4 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN-------TAISDSEARGLIELIETSPSLRV   76 (167)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT-------SCCBHHHHTTHHHHHHHCSSCCE
T ss_pred             HHHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccc-------cccchhHHHHHhhhhhhcccccc
Confidence            35677888889999999999877899998877765   457799997654       444455554433   35789999


Q ss_pred             EEecCcccCHHHHHHHHhcC---CCCCEEeecCCCCcCCChH------HHHhcCCCCeeeCC
Q 020754          193 LEMAYHVISTEIVLKILSSC---ALLEFLDLRGCWDVKLDDK------FMKGNFPNLKVLGP  245 (322)
Q Consensus       193 L~L~~~~i~~~~l~~i~~~~---~~L~~L~L~~c~~~~~~~~------~l~~~~~~Lk~L~~  245 (322)
                      |+|++|.|+++++..++..+   +.|++|+|+++........      ......+.|+.|+.
T Consensus        77 L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l  138 (167)
T d1pgva_          77 LNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGI  138 (167)
T ss_dssp             EECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             eeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeC
Confidence            99999999999998887644   7799999998753322221      12466788888843

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.1e-09  Score=79.67  Aligned_cols=48  Identities=17%  Similarity=0.272  Sum_probs=43.3

Q ss_pred             CCcccCCHHHHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCceeeecc
Q 020754            8 RHWDELIPDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDI   56 (322)
Q Consensus         8 ~~w~~LP~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw~~i~l   56 (322)
                      ..+..||+||+.+||+||+..++++ +++|||+|+.++.++.+|+..-.
T Consensus        17 D~i~~LP~Eil~~Ils~Ld~~dL~~-~~~vcr~w~~l~~~~~lW~~~~~   64 (102)
T d2ovrb1          17 DFISLLPKELALYVLSFLEPKDLLQ-AAQTCRYWRILAEDNLLWREKCK   64 (102)
T ss_dssp             STTTSSCHHHHHHHHTTSCHHHHHH-HTTSCHHHHHHHTCSHHHHHHHT
T ss_pred             CChhhCCHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHHCCHHHHHHHHH
Confidence            3467799999999999999999998 79999999999999999987643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=1.3e-09  Score=82.09  Aligned_cols=120  Identities=22%  Similarity=0.359  Sum_probs=79.0

Q ss_pred             CEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcC
Q 020754          108 QTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTM  187 (322)
Q Consensus       108 ~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~  187 (322)
                      |.|+|+++.++.-  .. ...+++|++|++++ +.++.- -..+ ..+++|+.|.++.+.+.  +       +..+ ..+
T Consensus         1 R~L~Ls~n~l~~l--~~-l~~l~~L~~L~ls~-N~l~~l-p~~~-~~l~~L~~L~l~~N~i~--~-------l~~~-~~l   64 (124)
T d1dcea3           1 RVLHLAHKDLTVL--CH-LEQLLLVTHLDLSH-NRLRAL-PPAL-AALRCLEVLQASDNALE--N-------VDGV-ANL   64 (124)
T ss_dssp             SEEECTTSCCSSC--CC-GGGGTTCCEEECCS-SCCCCC-CGGG-GGCTTCCEEECCSSCCC--C-------CGGG-TTC
T ss_pred             CEEEcCCCCCCCC--cc-cccCCCCCEEECCC-CccCcc-hhhh-hhhhccccccccccccc--c-------cCcc-ccc
Confidence            4677888766532  22 24568888888887 666531 1122 45788888877665442  1       1123 478


Q ss_pred             CCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCCh--HHHHhcCCCCeee
Q 020754          188 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVL  243 (322)
Q Consensus       188 p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~--~~l~~~~~~Lk~L  243 (322)
                      |+|++|++++|.|+.-.....+..+++|+.|+++++......+  ..+...+|+|+.|
T Consensus        65 ~~L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          65 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cccCeEECCCCccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            9999999999987754322334678999999999986443332  4567788988876

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.66  E-value=2.4e-07  Score=72.86  Aligned_cols=120  Identities=19%  Similarity=0.135  Sum_probs=90.5

Q ss_pred             HHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHh---cCCCcceeeccccccCCCCCCCCchHHHHHH---hcCCCCCE
Q 020754          119 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGK---HCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKR  192 (322)
Q Consensus       119 ~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~---~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~---~~~p~L~~  192 (322)
                      ++.+..+....|+|++|+|++++.+++.++..+++   .+++|++|+++       ++.+.+.++.+++   +..++|+.
T Consensus         6 ~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls-------~n~l~~~~~~~L~~~l~~~~~l~~   78 (166)
T d1io0a_           6 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIV-------GTRSNDPVAFALAEMLKVNNTLKS   78 (166)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECT-------TSCCCHHHHHHHHHHHHHCSSCCE
T ss_pred             HHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeecc-------CCcccHHHHHHHHHHHhhcccchh
Confidence            35677788888999999999878899999888876   56889999665       4445566665554   35789999


Q ss_pred             EEecCcccCHHHHHHHHh---cCCCCCEEeecCCC-CcCCCh-HH---HHhcCCCCeeeCC
Q 020754          193 LEMAYHVISTEIVLKILS---SCALLEFLDLRGCW-DVKLDD-KF---MKGNFPNLKVLGP  245 (322)
Q Consensus       193 L~L~~~~i~~~~l~~i~~---~~~~L~~L~L~~c~-~~~~~~-~~---l~~~~~~Lk~L~~  245 (322)
                      |.+.+|.++++++..++.   .++.|+.+.|..|. .++..+ ..   ..+.++.|+.|..
T Consensus        79 l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l  139 (166)
T d1io0a_          79 LNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGY  139 (166)
T ss_dssp             EECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred             hhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeC
Confidence            999999999999988875   55889988887654 332222 22   2568899999854

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=3.8e-09  Score=78.83  Aligned_cols=47  Identities=19%  Similarity=0.299  Sum_probs=41.8

Q ss_pred             ccCC----HHHHHHHHccCChHHHhhhhhhhhHHHHHHhcCCCceeeecccc
Q 020754           11 DELI----PDALGLIFRNLSLQEVLTVIPGVCKSWRRAVIGPYCWQEIDIEE   58 (322)
Q Consensus        11 ~~LP----~eiL~~IF~~L~~~~~l~~~~~VCk~W~~~~~~~~lw~~i~l~~   58 (322)
                      ..||    +||+.+||+||+..++++ |++|||+|+.++.++.+|+++....
T Consensus        12 ~~LP~~l~~EI~~~Ils~Ld~~dL~~-~s~Vck~W~~l~~d~~lWk~~~~~~   62 (118)
T d1p22a1          12 TALPARGLDHIAENILSYLDAKSLCA-AELVCKEWYRVTSDGMLWKKLIERM   62 (118)
T ss_dssp             HHTGGGTCHHHHHHHHTTCCHHHHHH-HHHHCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHCCCCChHHHHHHHHHcCCHHHHHH-HHHHHHHHHHHHcCHHHHHHHHHhh
Confidence            3566    699999999999999999 8999999999999999999876543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.54  E-value=1.5e-09  Score=88.78  Aligned_cols=127  Identities=19%  Similarity=0.179  Sum_probs=85.8

Q ss_pred             HhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHH
Q 020754          102 ENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN  181 (322)
Q Consensus       102 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~  181 (322)
                      ..+++|+.|+|++|.|++-  ..+ ..+++|++|+|++| .++.  +..+...+++|+.|.+..+.+.       .  +.
T Consensus        45 ~~L~~L~~L~Ls~n~I~~i--~~l-~~l~~L~~L~Ls~N-~i~~--i~~~~~~~~~L~~L~l~~N~i~-------~--l~  109 (198)
T d1m9la_          45 STLKACKHLALSTNNIEKI--SSL-SGMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYNQIA-------S--LS  109 (198)
T ss_dssp             HHTTTCCEEECSEEEESCC--CCH-HHHTTCCEEECCEE-EECS--CSSHHHHHHHCCEEECSEEECC-------C--HH
T ss_pred             hcccccceeECcccCCCCc--ccc-cCCccccChhhccc-cccc--cccccccccccccccccccccc-------c--cc
Confidence            4578999999999855531  122 34699999999984 5543  1223334467999988766542       1  22


Q ss_pred             HHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCC--C---h----HHHHhcCCCCeeeC
Q 020754          182 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKL--D---D----KFMKGNFPNLKVLG  244 (322)
Q Consensus       182 ~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~--~---~----~~l~~~~~~Lk~L~  244 (322)
                      .+. .+++|+.|+|++|.|++-.-...+..+++|+.|+|++|+....  .   .    ..+...+|+|+.|+
T Consensus       110 ~~~-~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         110 GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccc-ccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            333 6789999999999988754444567899999999999853321  0   0    12357889999983

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.48  E-value=5.8e-08  Score=78.92  Aligned_cols=139  Identities=17%  Similarity=0.139  Sum_probs=77.3

Q ss_pred             CeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCccee
Q 020754           82 SLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL  161 (322)
Q Consensus        82 ~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L  161 (322)
                      .++.|++.++.-.. +.. ...+++|+.|++++|.+++.  .. ...+++|++|+++++....-.+    ...+++|+.|
T Consensus        41 ~l~~L~l~~~~i~~-l~~-l~~l~nL~~L~Ls~N~l~~~--~~-l~~l~~L~~L~l~~n~~~~~~~----l~~l~~L~~L  111 (199)
T d2omxa2          41 QVTTLQADRLGIKS-IDG-VEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIADITP----LANLTNLTGL  111 (199)
T ss_dssp             TCCEEECTTSCCCC-CTT-GGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGG----GTTCTTCSEE
T ss_pred             CCCEEECCCCCCCC-ccc-cccCCCcCcCccccccccCc--cc-ccCCcccccccccccccccccc----cccccccccc
Confidence            46777776653211 111 24577888888888766542  12 3466788888887743322222    2456777777


Q ss_pred             eccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCe
Q 020754          162 CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLK  241 (322)
Q Consensus       162 ~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk  241 (322)
                      .+..+....      ..   . ...+++|+.|++++|.+..-.   -+..+++|+.|++.+|.....  .. ...+++|+
T Consensus       112 ~l~~~~~~~------~~---~-~~~l~~L~~L~l~~n~l~~~~---~l~~~~~L~~L~l~~n~l~~l--~~-l~~l~~L~  175 (199)
T d2omxa2         112 TLFNNQITD------ID---P-LKNLTNLNRLELSSNTISDIS---ALSGLTSLQQLNFSSNQVTDL--KP-LANLTTLE  175 (199)
T ss_dssp             ECCSSCCCC------CG---G-GTTCTTCSEEECCSSCCCCCG---GGTTCTTCSEEECCSSCCCCC--GG-GTTCTTCC
T ss_pred             ccccccccc------cc---c-cchhhhhHHhhhhhhhhcccc---cccccccccccccccccccCC--cc-ccCCCCCC
Confidence            765443311      01   1 235677777777777654321   134667777777777643321  11 34566666


Q ss_pred             eeCC
Q 020754          242 VLGP  245 (322)
Q Consensus       242 ~L~~  245 (322)
                      +|..
T Consensus       176 ~L~l  179 (199)
T d2omxa2         176 RLDI  179 (199)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            6643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=9e-09  Score=81.18  Aligned_cols=128  Identities=13%  Similarity=0.154  Sum_probs=87.2

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV  160 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~  160 (322)
                      ..++.|++++..-... ..+...+++|+.|+|++|.++.-  .. ...+++|++|++++ +.++.-. ..+...+++|+.
T Consensus        18 ~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~-~~~l~~L~~L~ls~-N~i~~l~-~~~~~~l~~L~~   91 (162)
T d1a9na_          18 VRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DG-FPLLRRLKTLLVNN-NRICRIG-EGLDQALPDLTE   91 (162)
T ss_dssp             TSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CC-CCCCSSCCEEECCS-SCCCEEC-SCHHHHCTTCCE
T ss_pred             CcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CC-cccCcchhhhhccc-ccccCCC-cccccccccccc
Confidence            3588999987642111 22345689999999999977642  22 35679999999999 4665421 223456899999


Q ss_pred             eeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHH--HHHHHhcCCCCCEEeec
Q 020754          161 LCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEI--VLKILSSCALLEFLDLR  221 (322)
Q Consensus       161 L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~--l~~i~~~~~~L~~L~L~  221 (322)
                      |.+..+.+.-      -..+..+ +.+|+|++|++++|.++...  -..++..+|+|+.||-.
T Consensus        92 L~L~~N~i~~------~~~l~~l-~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          92 LILTNNSLVE------LGDLDPL-ASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             EECCSCCCCC------GGGGGGG-GGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             ceeccccccc------ccccccc-ccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            9877654421      1222334 47999999999999875432  23456689999999854

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.37  E-value=2.8e-07  Score=76.22  Aligned_cols=146  Identities=17%  Similarity=0.140  Sum_probs=80.6

Q ss_pred             CeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCccee
Q 020754           82 SLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL  161 (322)
Q Consensus        82 ~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L  161 (322)
                      .++.|.+.++.-.. +.. ..++++|+.|++++|.++..  .. ...+++|+.|+++++ .++.  +..+ ..+++|+.+
T Consensus        42 ~L~~L~l~~~~i~~-l~~-l~~l~~L~~L~ls~n~i~~~--~~-l~~l~~l~~l~~~~n-~~~~--i~~l-~~l~~L~~l  112 (227)
T d1h6ua2          42 GITTLSAFGTGVTT-IEG-VQYLNNLIGLELKDNQITDL--AP-LKNLTKITELELSGN-PLKN--VSAI-AGLQSIKTL  112 (227)
T ss_dssp             TCCEEECTTSCCCC-CTT-GGGCTTCCEEECCSSCCCCC--GG-GTTCCSCCEEECCSC-CCSC--CGGG-TTCTTCCEE
T ss_pred             CcCEEECCCCCCCc-chh-HhcCCCCcEeecCCceeecc--cc-ccccccccccccccc-cccc--cccc-ccccccccc
Confidence            47778777654211 222 24688888888888766542  11 356688888888774 3332  1222 346777777


Q ss_pred             eccccccC---------------CCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCc
Q 020754          162 CRNMHPLD---------------TADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  226 (322)
Q Consensus       162 ~l~~~~l~---------------~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~  226 (322)
                      .+..+...               +.++.+...  ..+ ..+++|++|.+++|.+++...   +.++++|+.|++++|. +
T Consensus       113 ~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~-~~~~~L~~L~l~~n~~~~~~~---l~~l~~L~~L~Ls~n~-l  185 (227)
T d1h6ua2         113 DLTSTQITDVTPLAGLSNLQVLYLDLNQITNI--SPL-AGLTNLQYLSIGNAQVSDLTP---LANLSKLTTLKADDNK-I  185 (227)
T ss_dssp             ECTTSCCCCCGGGTTCTTCCEEECCSSCCCCC--GGG-GGCTTCCEEECCSSCCCCCGG---GTTCTTCCEEECCSSC-C
T ss_pred             ccccccccccchhccccchhhhhchhhhhchh--hhh-ccccccccccccccccccchh---hcccccceecccCCCc-c
Confidence            76533211               111111111  112 356778888887776653221   3467788888887774 4


Q ss_pred             CCChHHHHhcCCCCeeeCC
Q 020754          227 KLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       227 ~~~~~~l~~~~~~Lk~L~~  245 (322)
                      + +-.. ...+++|++|.+
T Consensus       186 ~-~l~~-l~~l~~L~~L~L  202 (227)
T d1h6ua2         186 S-DISP-LASLPNLIEVHL  202 (227)
T ss_dssp             C-CCGG-GGGCTTCCEEEC
T ss_pred             C-CChh-hcCCCCCCEEEC
Confidence            3 1111 356677777744

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.37  E-value=2.4e-07  Score=75.16  Aligned_cols=139  Identities=19%  Similarity=0.182  Sum_probs=82.7

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV  159 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~  159 (322)
                      .++++.|++++..-.. +.. ...+++|+.|.+.+|.+...  .. ...+++|+.|++++|.......    ...+++|+
T Consensus        61 l~nL~~L~Ls~N~l~~-~~~-l~~l~~L~~L~l~~n~~~~~--~~-l~~l~~L~~L~l~~~~~~~~~~----~~~l~~L~  131 (199)
T d2omxa2          61 LNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADI--TP-LANLTNLTGLTLFNNQITDIDP----LKNLTNLN  131 (199)
T ss_dssp             CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GG-GTTCTTCSEEECCSSCCCCCGG----GTTCTTCS
T ss_pred             CCCcCcCccccccccC-ccc-ccCCcccccccccccccccc--cc-cccccccccccccccccccccc----cchhhhhH
Confidence            4568888887653111 111 34678888888888744331  11 2456888888888754443222    23567888


Q ss_pred             eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCC
Q 020754          160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN  239 (322)
Q Consensus       160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~  239 (322)
                      .|.++.+.+.       .  +..+ ..+++|+.|++.+|.+++-.   -+.++++|++|++++|. ++ +-. ....+++
T Consensus       132 ~L~l~~n~l~-------~--~~~l-~~~~~L~~L~l~~n~l~~l~---~l~~l~~L~~L~ls~N~-i~-~i~-~l~~L~~  195 (199)
T d2omxa2         132 RLELSSNTIS-------D--ISAL-SGLTSLQQLNFSSNQVTDLK---PLANLTTLERLDISSNK-VS-DIS-VLAKLTN  195 (199)
T ss_dssp             EEECCSSCCC-------C--CGGG-TTCTTCSEEECCSSCCCCCG---GGTTCTTCCEEECCSSC-CC-CCG-GGGGCTT
T ss_pred             Hhhhhhhhhc-------c--cccc-cccccccccccccccccCCc---cccCCCCCCEEECCCCC-CC-CCc-cccCCCC
Confidence            8877654331       1  1122 36788888888888766521   14577888888888874 43 111 2346677


Q ss_pred             Ceee
Q 020754          240 LKVL  243 (322)
Q Consensus       240 Lk~L  243 (322)
                      |++|
T Consensus       196 L~~L  199 (199)
T d2omxa2         196 LESL  199 (199)
T ss_dssp             CSEE
T ss_pred             CCcC
Confidence            7665

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.30  E-value=2.9e-07  Score=75.35  Aligned_cols=126  Identities=21%  Similarity=0.216  Sum_probs=57.3

Q ss_pred             HhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccC------------
Q 020754          102 ENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLD------------  169 (322)
Q Consensus       102 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~------------  169 (322)
                      .++++|++|+|++|.+++.  ..+ ..+++|+.|++++ +.++.  +.. ...+++|+.|.+..+...            
T Consensus        65 ~~l~~L~~L~L~~n~i~~l--~~~-~~l~~L~~L~l~~-n~i~~--l~~-l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~  137 (210)
T d1h6ta2          65 QYLPNVTKLFLNGNKLTDI--KPL-ANLKNLGWLFLDE-NKVKD--LSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLE  137 (210)
T ss_dssp             GGCTTCCEEECCSSCCCCC--GGG-TTCTTCCEEECCS-SCCCC--GGG-GTTCTTCCEEECTTSCCCCCGGGGGCTTCC
T ss_pred             hhCCCCCEEeCCCccccCc--ccc-ccCcccccccccc-ccccc--ccc-cccccccccccccccccccccccccccccc
Confidence            3466666666666655431  111 3456666666665 34432  111 233455666655433221            


Q ss_pred             ---CCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeee
Q 020754          170 ---TADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVL  243 (322)
Q Consensus       170 ---~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L  243 (322)
                         ..++.+.+.  . ....+++|+.+.+++|.+++-  .. +.++++|+.|+|++|. ++.- .. ...+++|++|
T Consensus       138 ~l~~~~n~l~~~--~-~~~~l~~L~~l~l~~n~l~~i--~~-l~~l~~L~~L~Ls~N~-i~~l-~~-l~~l~~L~~L  205 (210)
T d1h6ta2         138 SLYLGNNKITDI--T-VLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNH-ISDL-RA-LAGLKNLDVL  205 (210)
T ss_dssp             EEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCBC-GG-GTTCTTCSEE
T ss_pred             cccccccccccc--c-ccccccccccccccccccccc--cc-ccCCCCCCEEECCCCC-CCCC-hh-hcCCCCCCEE
Confidence               001111110  0 112456666666666655431  11 3456666666666663 3211 11 3455666665

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.26  E-value=5.4e-07  Score=73.63  Aligned_cols=119  Identities=22%  Similarity=0.173  Sum_probs=73.8

Q ss_pred             CCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHH
Q 020754          104 AGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAI  183 (322)
Q Consensus       104 ~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l  183 (322)
                      +.+|+.|.+.++.++..  .. ...+++|++|++++ +.++.-  ..+ ..+++|+.|.++.+.+.       .  +..+
T Consensus        45 L~~L~~L~l~~~~i~~l--~~-l~~l~~L~~L~L~~-n~i~~l--~~~-~~l~~L~~L~l~~n~i~-------~--l~~l  108 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV--QG-IQYLPNVTKLFLNG-NKLTDI--KPL-ANLKNLGWLFLDENKVK-------D--LSSL  108 (210)
T ss_dssp             HHTCCEEECTTSCCCCC--TT-GGGCTTCCEEECCS-SCCCCC--GGG-TTCTTCCEEECCSSCCC-------C--GGGG
T ss_pred             hcCccEEECcCCCCCCc--hh-HhhCCCCCEEeCCC-ccccCc--ccc-ccCcccccccccccccc-------c--cccc
Confidence            35899999999976542  22 35789999999999 466642  223 46899999988765432       1  1122


Q ss_pred             HhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          184 ASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       184 ~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                       ..+++|+.|+++++.++.-   .-+.++++|+.++++++. ++ +. .....+++|+++..
T Consensus       109 -~~l~~L~~L~l~~~~~~~~---~~l~~l~~l~~l~~~~n~-l~-~~-~~~~~l~~L~~l~l  163 (210)
T d1h6ta2         109 -KDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNK-IT-DI-TVLSRLTKLDTLSL  163 (210)
T ss_dssp             -TTCTTCCEEECTTSCCCCC---GGGGGCTTCCEEECCSSC-CC-CC-GGGGGCTTCSEEEC
T ss_pred             -ccccccccccccccccccc---cccccccccccccccccc-cc-cc-cccccccccccccc
Confidence             3577888888877765431   123456677777776664 32 11 12345566666643

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.17  E-value=3e-07  Score=68.72  Aligned_cols=104  Identities=13%  Similarity=0.121  Sum_probs=73.3

Q ss_pred             HhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHH
Q 020754          102 ENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN  181 (322)
Q Consensus       102 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~  181 (322)
                      ..+++|++|++++|.++.  +......+++|+.|++++ +.++.-  .. ...+++|++|.++.+.+.-.      ....
T Consensus        17 ~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~-N~i~~l--~~-~~~l~~L~~L~l~~N~i~~~------~~~~   84 (124)
T d1dcea3          17 EQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASD-NALENV--DG-VANLPRLQELLLCNNRLQQS------AAIQ   84 (124)
T ss_dssp             GGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCS-SCCCCC--GG-GTTCSSCCEEECCSSCCCSS------STTG
T ss_pred             ccCCCCCEEECCCCccCc--chhhhhhhhccccccccc-cccccc--Cc-cccccccCeEECCCCccCCC------CCch
Confidence            568899999999997763  222235689999999998 677642  23 34689999998876654210      1122


Q ss_pred             HHHhcCCCCCEEEecCcccCHHH--HHHHHhcCCCCCEE
Q 020754          182 AIASTMPKLKRLEMAYHVISTEI--VLKILSSCALLEFL  218 (322)
Q Consensus       182 ~l~~~~p~L~~L~L~~~~i~~~~--l~~i~~~~~~L~~L  218 (322)
                      .+ ..+|+|+.|++++|.++...  ...+...+|+|+.|
T Consensus        85 ~l-~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          85 PL-VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             GG-GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             hh-cCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            33 47999999999999876432  34566678999887

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.00  E-value=1.6e-06  Score=76.59  Aligned_cols=77  Identities=21%  Similarity=0.152  Sum_probs=45.5

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV  159 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~  159 (322)
                      ...++.|+++++.-.. +.. ...+++|+.|.+.+|.++..  .. ...+++|++|+++++ .++.-  .. ...++.++
T Consensus       218 ~~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~--~~-~~~~~~L~~L~l~~~-~l~~~--~~-~~~~~~l~  288 (384)
T d2omza2         218 LTNLDELSLNGNQLKD-IGT-LASLTNLTDLDLANNQISNL--AP-LSGLTKLTELKLGAN-QISNI--SP-LAGLTALT  288 (384)
T ss_dssp             CTTCCEEECCSSCCCC-CGG-GGGCTTCSEEECCSSCCCCC--GG-GTTCTTCSEEECCSS-CCCCC--GG-GTTCTTCS
T ss_pred             cCCCCEEECCCCCCCC-cch-hhcccccchhccccCccCCC--Cc-ccccccCCEeeccCc-ccCCC--Cc-cccccccc
Confidence            4568889887754211 111 34678899999998866542  12 345688999998873 44321  11 23445566


Q ss_pred             eeeccc
Q 020754          160 VLCRNM  165 (322)
Q Consensus       160 ~L~l~~  165 (322)
                      .+.++.
T Consensus       289 ~l~~~~  294 (384)
T d2omza2         289 NLELNE  294 (384)
T ss_dssp             EEECCS
T ss_pred             cccccc
Confidence            655443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=3.3e-06  Score=65.95  Aligned_cols=58  Identities=26%  Similarity=0.235  Sum_probs=28.1

Q ss_pred             cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCC--h----HHHHhcCCCCeeeC
Q 020754          186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLD--D----KFMKGNFPNLKVLG  244 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~--~----~~l~~~~~~Lk~L~  244 (322)
                      .+|+|+.|+|++|.|++-.-...+. ..+|+.|++++++.....  .    ..+.+.+|+|++|+
T Consensus        89 ~l~~L~~L~Ls~N~i~~l~~l~~l~-~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          89 KAPNLKILNLSGNELKSERELDKIK-GLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HSTTCCCCCCTTSCCCCGGGHHHHT-TCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             hCCcccccccccCccccchhhhhhh-ccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            4566666666666555422222222 334666666665433211  1    13355566666663

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=2e-07  Score=79.17  Aligned_cols=155  Identities=19%  Similarity=0.126  Sum_probs=84.1

Q ss_pred             CCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcce
Q 020754           81 GSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVV  160 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~  160 (322)
                      +.++.|+|++..-..........+++|+.|.|.+|.++.  +... ..+++|++|+|++ +.++..  ......+++|+.
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~--l~~~-~~l~~L~~L~Ls~-N~l~~~--~~~~~~l~~L~~  104 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVD-GTLPVLGTLDLSH-NQLQSL--PLLGQTLPALTV  104 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EECC-SCCTTCCEEECCS-SCCSSC--CCCTTTCTTCCE
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc--cccc-ccccccccccccc-cccccc--cccccccccccc
Confidence            458888887643211111112457889999998887763  2211 3578888898887 455431  223455678888


Q ss_pred             eeccccccCC-----------------CCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCC
Q 020754          161 LCRNMHPLDT-----------------ADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC  223 (322)
Q Consensus       161 L~l~~~~l~~-----------------~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c  223 (322)
                      |.++.+....                 .++.+..-. ......+++|+.|++++|.++.... ..+..+++|++|+|++|
T Consensus       105 L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~-~~~~~~l~~l~~l~l~~N~l~~~~~-~~~~~l~~L~~L~Ls~N  182 (266)
T d1p9ag_         105 LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTELPA-GLLNGLENLDTLLLQEN  182 (266)
T ss_dssp             EECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCSCCCT-TTTTTCTTCCEEECCSS
T ss_pred             ccccccccceeeccccccccccccccccccccceec-cccccccccchhcccccccccccCc-cccccccccceeecccC
Confidence            8776443211                 111111000 1122346777777777776553221 22345777888888777


Q ss_pred             CCcCCChHHHHhcCCCCeeeCC
Q 020754          224 WDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       224 ~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      ...+.....  ...++|+.|.+
T Consensus       183 ~L~~lp~~~--~~~~~L~~L~L  202 (266)
T d1p9ag_         183 SLYTIPKGF--FGSHLLPFAFL  202 (266)
T ss_dssp             CCCCCCTTT--TTTCCCSEEEC
T ss_pred             CCcccChhH--CCCCCCCEEEe
Confidence            533322211  24566666644

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.93  E-value=4.4e-07  Score=73.58  Aligned_cols=163  Identities=15%  Similarity=0.186  Sum_probs=97.6

Q ss_pred             hhhhHHHHHHhcC-CCceeeeccccccccCChhHHHHHHHHHHHhcCCCeeEEEecCCCChHHHHHHHHhCCCCCEEecC
Q 020754           35 PGVCKSWRRAVIG-PYCWQEIDIEEWSNRCQPDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLP  113 (322)
Q Consensus        35 ~~VCk~W~~~~~~-~~lw~~i~l~~~~~~~~~~~~~~~l~~l~~r~~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~  113 (322)
                      ..+-++|...... +.-...+++......  -..+..-+..     -.++++|++++..-.. +.. ...+++|+.|+|+
T Consensus         8 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~~--i~~l~~sl~~-----L~~L~~L~Ls~n~I~~-i~~-l~~l~~L~~L~Ls   78 (198)
T d1m9la_           8 KDAIRIFEERKSVVATEAEKVELHGMIPP--IEKMDATLST-----LKACKHLALSTNNIEK-ISS-LSGMENLRILSLG   78 (198)
T ss_dssp             HHHHHHHHHTTCCCCTTCSCEECCBCCTT--CCCCHHHHHH-----TTTCCEEECSEEEESC-CCC-HHHHTTCCEEECC
T ss_pred             HHHHHHHHHHcCCcccccceeeeecccCc--hhhhhhHHhc-----ccccceeECcccCCCC-ccc-ccCCccccChhhc
Confidence            4455677665542 444556665543211  0011111111     3569999997642111 112 2457899999999


Q ss_pred             CCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCch-HHHHHHhcCCCCCE
Q 020754          114 RSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDD-EANAIASTMPKLKR  192 (322)
Q Consensus       114 ~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~-~~~~l~~~~p~L~~  192 (322)
                      +|.++.  +..+...+++|+.|++++ +.++.  +..+ ..+++|+.|.++.+.+       .+- .+..+ ..+|+|+.
T Consensus        79 ~N~i~~--i~~~~~~~~~L~~L~l~~-N~i~~--l~~~-~~l~~L~~L~L~~N~i-------~~~~~~~~l-~~l~~L~~  144 (198)
T d1m9la_          79 RNLIKK--IENLDAVADTLEELWISY-NQIAS--LSGI-EKLVNLRVLYMSNNKI-------TNWGEIDKL-AALDKLED  144 (198)
T ss_dssp             EEEECS--CSSHHHHHHHCCEEECSE-EECCC--HHHH-HHHHHSSEEEESEEEC-------CCHHHHHHH-TTTTTCSE
T ss_pred             cccccc--cccccccccccccccccc-ccccc--cccc-cccccccccccccchh-------ccccccccc-cCCCccce
Confidence            996553  122233347899999998 57764  2333 3468899998876644       222 23344 48999999


Q ss_pred             EEecCcccCHHH---------HHHHHhcCCCCCEEee
Q 020754          193 LEMAYHVISTEI---------VLKILSSCALLEFLDL  220 (322)
Q Consensus       193 L~L~~~~i~~~~---------l~~i~~~~~~L~~L~L  220 (322)
                      |+|++|.++...         -..++..+|+|+.||-
T Consensus       145 L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~  181 (198)
T d1m9la_         145 LLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             EEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESS
T ss_pred             eecCCCccccCcccccchhhHHHHHHHHCCCcCEeCC
Confidence            999998754321         2334678999999984

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.83  E-value=1e-05  Score=71.19  Aligned_cols=148  Identities=20%  Similarity=0.148  Sum_probs=93.3

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV  159 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~  159 (322)
                      ...++.+.+++..-.....  ...+++|+.|.+.+|.+++..   ....+++|+.|+++++ .++.-.  . ...+++|+
T Consensus       196 l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n-~l~~~~--~-~~~~~~L~  266 (384)
T d2omza2         196 LTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIG---TLASLTNLTDLDLANN-QISNLA--P-LSGLTKLT  266 (384)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG---GGGGCTTCSEEECCSS-CCCCCG--G-GTTCTTCS
T ss_pred             ccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCcc---hhhcccccchhccccC-ccCCCC--c-ccccccCC
Confidence            3567788887643211111  245789999999999776532   2356799999999985 555321  2 34679999


Q ss_pred             eeeccccccCC---------------CCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020754          160 VLCRNMHPLDT---------------ADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  224 (322)
Q Consensus       160 ~L~l~~~~l~~---------------~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~  224 (322)
                      .|.+..+.+.-               ..+.+..  ... ...++++++|++++|.+++-.   -+..+|+|++|++++|.
T Consensus       267 ~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~--~~~-~~~~~~l~~L~ls~n~l~~l~---~l~~l~~L~~L~L~~n~  340 (384)
T d2omza2         267 ELKLGANQISNISPLAGLTALTNLELNENQLED--ISP-ISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFANNK  340 (384)
T ss_dssp             EEECCSSCCCCCGGGTTCTTCSEEECCSSCCSC--CGG-GGGCTTCSEEECCSSCCSCCG---GGGGCTTCCEEECCSSC
T ss_pred             EeeccCcccCCCCcccccccccccccccccccc--ccc-cchhcccCeEECCCCCCCCCc---ccccCCCCCEEECCCCC
Confidence            99986554321               1111111  111 346788888888888876532   14678889999998884


Q ss_pred             CcCCChHHHHhcCCCCeeeCC
Q 020754          225 DVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       225 ~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                       ++ +-.. ...+++|++|.+
T Consensus       341 -l~-~l~~-l~~l~~L~~L~l  358 (384)
T d2omza2         341 -VS-DVSS-LANLTNINWLSA  358 (384)
T ss_dssp             -CC-CCGG-GGGCTTCCEEEC
T ss_pred             -CC-CChh-HcCCCCCCEEEC
Confidence             43 1122 457888888854

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.66  E-value=5.8e-07  Score=72.33  Aligned_cols=111  Identities=15%  Similarity=0.073  Sum_probs=60.5

Q ss_pred             CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHH
Q 020754          105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  184 (322)
Q Consensus       105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~  184 (322)
                      ++++.|.|++|.|+...-......+++|+.|++++ +.+...... .....++|+.|.++.+.+..-.    .   .+ .
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~-N~i~~~~~~-~~~~~~~L~~L~Ls~N~l~~l~----~---~~-F   98 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPN-AFEGASHIQELQLGENKIKEIS----N---KM-F   98 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTT-TTTTCTTCCEEECCSCCCCEEC----S---SS-S
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccc-ccccccccc-ccccccccceeeeccccccccC----H---HH-H
Confidence            46777777777554321122223457777777776 444322211 2234566777766555432100    0   11 1


Q ss_pred             hcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCc
Q 020754          185 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  226 (322)
Q Consensus       185 ~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~  226 (322)
                      ..+++|++|+|++|.|+.-.. ..+..+++|++|+|+++...
T Consensus        99 ~~l~~L~~L~L~~N~l~~i~~-~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          99 LGLHQLKTLNLYDNQISCVMP-GSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             TTCTTCCEEECCSSCCCEECT-TSSTTCTTCCEEECTTCCBC
T ss_pred             hCCCcccccccCCccccccCH-HHhcCCcccccccccccccc
Confidence            367888888888887553211 12346778888888877533

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.64  E-value=1e-05  Score=66.35  Aligned_cols=141  Identities=21%  Similarity=0.135  Sum_probs=94.5

Q ss_pred             CCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcc
Q 020754           80 SGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLV  159 (322)
Q Consensus        80 ~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~  159 (322)
                      ...++.+.++++... .+..+ ..+++|+.+.+.++.+...  .. ....+.++.+.++.+.......    ...+++|+
T Consensus        84 l~~l~~l~~~~n~~~-~i~~l-~~l~~L~~l~l~~~~~~~~--~~-~~~~~~~~~l~~~~~~~~~~~~----~~~~~~L~  154 (227)
T d1h6ua2          84 LTKITELELSGNPLK-NVSAI-AGLQSIKTLDLTSTQITDV--TP-LAGLSNLQVLYLDLNQITNISP----LAGLTNLQ  154 (227)
T ss_dssp             CCSCCEEECCSCCCS-CCGGG-TTCTTCCEEECTTSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCC
T ss_pred             ccccccccccccccc-ccccc-ccccccccccccccccccc--ch-hccccchhhhhchhhhhchhhh----hccccccc
Confidence            467889998775421 12222 3689999999999854432  11 2346899999998854332222    24678999


Q ss_pred             eeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCC
Q 020754          160 VLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN  239 (322)
Q Consensus       160 ~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~  239 (322)
                      .|.+..+.+.       +.  ..+ ..+|+|++|+|++|.+++-  . -+.++++|++|+|++|. ++.- . -...+++
T Consensus       155 ~L~l~~n~~~-------~~--~~l-~~l~~L~~L~Ls~n~l~~l--~-~l~~l~~L~~L~Ls~N~-lt~i-~-~l~~l~~  218 (227)
T d1h6ua2         155 YLSIGNAQVS-------DL--TPL-ANLSKLTTLKADDNKISDI--S-PLASLPNLIEVHLKNNQ-ISDV-S-PLANTSN  218 (227)
T ss_dssp             EEECCSSCCC-------CC--GGG-TTCTTCCEEECCSSCCCCC--G-GGGGCTTCCEEECTTSC-CCBC-G-GGTTCTT
T ss_pred             cccccccccc-------cc--hhh-cccccceecccCCCccCCC--h-hhcCCCCCCEEECcCCc-CCCC-c-ccccCCC
Confidence            9987655431       11  123 4799999999999988752  2 25689999999999995 5421 1 2568899


Q ss_pred             CeeeCC
Q 020754          240 LKVLGP  245 (322)
Q Consensus       240 Lk~L~~  245 (322)
                      |++|.+
T Consensus       219 L~~L~l  224 (227)
T d1h6ua2         219 LFIVTL  224 (227)
T ss_dssp             CCEEEE
T ss_pred             CCEEEe
Confidence            988843

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=2.7e-06  Score=72.52  Aligned_cols=131  Identities=17%  Similarity=0.074  Sum_probs=77.0

Q ss_pred             HhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHH
Q 020754          102 ENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN  181 (322)
Q Consensus       102 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~  181 (322)
                      ..+++|+.|.+.++.+.... ......+++|+.+++++ +.++.-.- ...+.+++|+.|.+..+.+..       -...
T Consensus       102 ~~l~~L~~L~l~~n~~~~~~-~~~~~~~~~L~~l~l~~-N~l~~i~~-~~f~~~~~L~~L~l~~N~l~~-------l~~~  171 (284)
T d1ozna_         102 HGLGRLHTLHLDRCGLQELG-PGLFRGLAALQYLYLQD-NALQALPD-DTFRDLGNLTHLFLHGNRISS-------VPER  171 (284)
T ss_dssp             TTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECCS-SCCCCCCT-TTTTTCTTCCEEECCSSCCCE-------ECTT
T ss_pred             cccccCCEEecCCccccccc-ccccchhcccchhhhcc-ccccccCh-hHhccccchhhcccccCcccc-------cchh
Confidence            45678888888887543211 12223457788888887 55543211 122456778888765554321       1111


Q ss_pred             HHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          182 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       182 ~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      ++ ..+++|+.|.+++|.++... ...+.++++|++|++++|...+ ........+++|++|.+
T Consensus       172 ~f-~~l~~L~~l~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~L~~L~l  232 (284)
T d1ozna_         172 AF-RGLHSLDRLLLHQNRVAHVH-PHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRL  232 (284)
T ss_dssp             TT-TTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEEC
T ss_pred             hh-ccccccchhhhhhccccccC-hhHhhhhhhccccccccccccc-ccccccccccccCEEEe
Confidence            22 36788888888888765322 2234567888888888876443 33344567788888754

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=1.8e-05  Score=61.52  Aligned_cols=140  Identities=19%  Similarity=0.189  Sum_probs=73.2

Q ss_pred             hhHHHHHHHHHHHhcCCCeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCC
Q 020754           65 PDHLDRMVEMLITRSSGSLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIG  144 (322)
Q Consensus        65 ~~~~~~~l~~l~~r~~~~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~  144 (322)
                      +..+..+-..+..+..+..+.|+++++.....+.    ....+..+....+  ....+..+...+++|++|+|++ +.++
T Consensus         6 ~~~ie~l~~~l~~~~~~~~~~Ldls~l~~~~~l~----~~~~~~~l~~~~~--~~~~l~~~~~~~~~L~~L~Ls~-N~i~   78 (162)
T d1koha1           6 PEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLV----AQNIDVVLNRRSS--MAATLRIIEENIPELLSLNLSN-NRLY   78 (162)
T ss_dssp             HHHHHHHHHHHHTTBCSSSCCBCCCCCSSCTTTT----TTTCCCCTTSHHH--HHHHHHHHHHHCTTCCCCCCCS-SCCC
T ss_pred             HHHHHHHHHHHHhhcchhhCeeecccCCCCchhh----hccchhhcchhhh--HhhhhHHHHHhCCCCCEeeCCC-cccc
Confidence            4444554444555666667777776653221110    0111111111111  1122344445677777777777 5555


Q ss_pred             H-HHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCH------HHHHHHHhcCCCCCE
Q 020754          145 A-PALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIST------EIVLKILSSCALLEF  217 (322)
Q Consensus       145 ~-~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~------~~l~~i~~~~~~L~~  217 (322)
                      . ..+......|++|+.|.++.+.+       .+-...... ..++|++|++.+|.++.      .....+.+.+|+|+.
T Consensus        79 ~l~~~~~~~~~l~~L~~L~Ls~N~i-------~~l~~l~~l-~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~  150 (162)
T d1koha1          79 RLDDMSSIVQKAPNLKILNLSGNEL-------KSERELDKI-KGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLR  150 (162)
T ss_dssp             CCSGGGTHHHHSTTCCCCCCTTSCC-------CCGGGHHHH-TTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCE
T ss_pred             CCchhHHHHhhCCcccccccccCcc-------ccchhhhhh-hccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCE
Confidence            4 23334445677777776554433       221112222 34578888888886542      345566778888888


Q ss_pred             Ee
Q 020754          218 LD  219 (322)
Q Consensus       218 L~  219 (322)
                      ||
T Consensus       151 LD  152 (162)
T d1koha1         151 LD  152 (162)
T ss_dssp             ET
T ss_pred             EC
Confidence            86

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=6.6e-06  Score=69.96  Aligned_cols=38  Identities=18%  Similarity=0.164  Sum_probs=17.5

Q ss_pred             cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020754          186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  224 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~  224 (322)
                      .+++|++|++++|.++... ...+..+++|+.|+|++++
T Consensus       199 ~l~~L~~L~l~~N~i~~~~-~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         199 DLGRLMTLYLFANNLSALP-TEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             TCTTCCEEECCSSCCSCCC-HHHHTTCTTCCEEECCSSC
T ss_pred             hhhhccccccccccccccc-ccccccccccCEEEecCCC
Confidence            4455555555555443221 1223345555555555543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.37  E-value=5.2e-06  Score=66.50  Aligned_cols=123  Identities=16%  Similarity=0.046  Sum_probs=80.0

Q ss_pred             CCEEecCCCCCCHHHHHHHHhc-CCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHHh
Q 020754          107 LQTLRLPRSEMSDSIVAQIAGR-LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS  185 (322)
Q Consensus       107 L~~L~L~~~~i~~~~l~~l~~~-~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~~  185 (322)
                      .+.++.++++++.     +... .+++++|+|++ +.++..........+++|+.|.+..+.+..       .... ...
T Consensus        10 ~~~v~Cs~~~L~~-----iP~~lp~~l~~L~Ls~-N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~-------~~~~-~~~   75 (192)
T d1w8aa_          10 GTTVDCTGRGLKE-----IPRDIPLHTTELLLND-NELGRISSDGLFGRLPHLVKLELKRNQLTG-------IEPN-AFE   75 (192)
T ss_dssp             TTEEECTTSCCSS-----CCSCCCTTCSEEECCS-CCCCSBCCSCSGGGCTTCCEEECCSSCCCC-------BCTT-TTT
T ss_pred             CCEEEEeCCCcCc-----cCCCCCCCCCEEEeCC-CCCcccccccccCCCceEeeeecccccccc-------cccc-ccc
Confidence            4567776665442     1122 26899999998 777643323333567999999886654421       1111 223


Q ss_pred             cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      .+++|++|+|++|.++.-. ...+.++++|++|+|+++...+.. ...+...++|++|.+
T Consensus        76 ~~~~L~~L~Ls~N~l~~l~-~~~F~~l~~L~~L~L~~N~l~~i~-~~~f~~l~~L~~l~L  133 (192)
T d1w8aa_          76 GASHIQELQLGENKIKEIS-NKMFLGLHQLKTLNLYDNQISCVM-PGSFEHLNSLTSLNL  133 (192)
T ss_dssp             TCTTCCEEECCSCCCCEEC-SSSSTTCTTCCEEECCSSCCCEEC-TTSSTTCTTCCEEEC
T ss_pred             cccccceeeeccccccccC-HHHHhCCCcccccccCCccccccC-HHHhcCCcccccccc
Confidence            6899999999999866421 123568999999999999644322 233467889999865

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=6.8e-06  Score=69.30  Aligned_cols=133  Identities=17%  Similarity=0.060  Sum_probs=74.1

Q ss_pred             CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCC----------
Q 020754          105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKL----------  174 (322)
Q Consensus       105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~----------  174 (322)
                      ++|+.|+|++|.++..... ....+++|++|+|++ +.++.  +..+ ..+++|+.|.++.+.+......          
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~-~f~~l~~L~~L~L~~-N~l~~--l~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L  105 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDR-AELTK--LQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL  105 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTT-SCCCE--EECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEE
T ss_pred             cCCCEEECcCCcCCCcCHH-Hhhcccccccccccc-ccccc--cccc-cccccccccccccccccccccccccccccccc
Confidence            5899999999977642222 234679999999999 57763  2222 3679999999887655321100          


Q ss_pred             ------CCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          175 ------SQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       175 ------~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                            ...- .......+++|++|.+.+|.++.-. ......+++|+.|++++|.... ........+++|++|.+
T Consensus       106 ~l~~~~~~~~-~~~~~~~l~~l~~L~l~~n~l~~l~-~~~~~~l~~l~~l~l~~N~l~~-~~~~~~~~l~~L~~L~L  179 (266)
T d1p9ag_         106 DVSFNRLTSL-PLGALRGLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLL  179 (266)
T ss_dssp             ECCSSCCCCC-CSSTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCCSC-CCTTTTTTCTTCCEEEC
T ss_pred             ccccccccee-eccccccccccccccccccccceec-cccccccccchhcccccccccc-cCccccccccccceeec
Confidence                  0000 0001112344444444444332111 1223356778888888774332 22233456777888764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.21  E-value=3.2e-05  Score=66.16  Aligned_cols=56  Identities=20%  Similarity=0.156  Sum_probs=26.3

Q ss_pred             cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeC
Q 020754          186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG  244 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~  244 (322)
                      .+++++.|.+++|.++.... ..+.++++|++|+|++|...+.. .. ...+++|++|.
T Consensus       193 ~~~~l~~L~~s~n~l~~~~~-~~~~~l~~L~~L~L~~N~L~~lp-~~-l~~l~~L~~L~  248 (305)
T d1xkua_         193 GLNNLAKLGLSFNSISAVDN-GSLANTPHLRELHLNNNKLVKVP-GG-LADHKYIQVVY  248 (305)
T ss_dssp             TCTTCCEEECCSSCCCEECT-TTGGGSTTCCEEECCSSCCSSCC-TT-TTTCSSCCEEE
T ss_pred             cccccccccccccccccccc-ccccccccceeeecccccccccc-cc-cccccCCCEEE
Confidence            45556666666555433211 12235566666666666332211 11 23455555553

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.98  E-value=7.5e-05  Score=63.72  Aligned_cols=128  Identities=13%  Similarity=0.112  Sum_probs=75.7

Q ss_pred             HhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHH
Q 020754          102 ENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN  181 (322)
Q Consensus       102 ~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~  181 (322)
                      ..+++|+.+.+.++.++.-.    ...+++|+.|+++++ ..+...... ...++.++.|.++.+.+.       .....
T Consensus       147 ~~l~~L~~l~l~~n~l~~l~----~~~~~~L~~L~l~~n-~~~~~~~~~-~~~~~~l~~L~~s~n~l~-------~~~~~  213 (305)
T d1xkua_         147 QGMKKLSYIRIADTNITTIP----QGLPPSLTELHLDGN-KITKVDAAS-LKGLNNLAKLGLSFNSIS-------AVDNG  213 (305)
T ss_dssp             GGCTTCCEEECCSSCCCSCC----SSCCTTCSEEECTTS-CCCEECTGG-GTTCTTCCEEECCSSCCC-------EECTT
T ss_pred             ccccccCccccccCCccccC----cccCCccCEEECCCC-cCCCCChhH-hhcccccccccccccccc-------ccccc
Confidence            44677888888887544210    123578888888873 443332222 245677888876544332       11112


Q ss_pred             HHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHH-----HHhcCCCCeeeCC
Q 020754          182 AIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKF-----MKGNFPNLKVLGP  245 (322)
Q Consensus       182 ~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~-----l~~~~~~Lk~L~~  245 (322)
                      .+ ..+++|+.|+|++|.++.-  ..-+..+++|++|+|++|...+.+...     +....+.|+.|.+
T Consensus       214 ~~-~~l~~L~~L~L~~N~L~~l--p~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L  279 (305)
T d1xkua_         214 SL-ANTPHLRELHLNNNKLVKV--PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL  279 (305)
T ss_dssp             TG-GGSTTCCEEECCSSCCSSC--CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred             cc-cccccceeeeccccccccc--ccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEEC
Confidence            22 3789999999999987632  122457899999999998633322221     1234455666643

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=96.87  E-value=8.2e-06  Score=70.30  Aligned_cols=133  Identities=17%  Similarity=0.165  Sum_probs=78.3

Q ss_pred             CCeeEEEecCCCChH--HHHHHHHhCCCCCEEecCC-CCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCC
Q 020754           81 GSLRKLCVSGLHNDM--MFSLIAENAGSLQTLRLPR-SEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKL  157 (322)
Q Consensus        81 ~~l~~L~l~~~~~~~--~l~~l~~~~~~L~~L~L~~-~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~  157 (322)
                      .+++.|+|++..-..  .+..-...+++|++|+|++ +.++.. +..-..++++|++|+|++ +.+..... .....+++
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~-N~l~~~~~-~~~~~~~~  126 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITH-TNVSGAIP-DFLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEE-ECCEEECC-GGGGGCTT
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccc-cccccccccccchhhhcc-cccccccc-ccccchhh
Confidence            368999998753211  1111234689999999986 444322 222235679999999998 45543221 22345688


Q ss_pred             cceeeccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCC-CCEEeecCCCC
Q 020754          158 LVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCAL-LEFLDLRGCWD  225 (322)
Q Consensus       158 L~~L~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~-L~~L~L~~c~~  225 (322)
                      |+.+.+..+.....   + .   ..+ ..+++|+.+++++|.++.... ..+..++. ++.++++++..
T Consensus       127 L~~l~l~~N~~~~~---~-p---~~l-~~l~~L~~l~l~~n~l~~~ip-~~~~~l~~l~~~l~~~~n~l  186 (313)
T d1ogqa_         127 LVTLDFSYNALSGT---L-P---PSI-SSLPNLVGITFDGNRISGAIP-DSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             CCEEECCSSEEESC---C-C---GGG-GGCTTCCEEECCSSCCEEECC-GGGGCCCTTCCEEECCSSEE
T ss_pred             hccccccccccccc---C-c---hhh-ccCcccceeeccccccccccc-cccccccccccccccccccc
Confidence            88887765543210   0 1   122 378899999999987543211 12234544 47888887743

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=96.32  E-value=0.002  Score=55.02  Aligned_cols=130  Identities=15%  Similarity=0.122  Sum_probs=65.5

Q ss_pred             CeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCccee
Q 020754           82 SLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL  161 (322)
Q Consensus        82 ~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L  161 (322)
                      ++++|++++..-.. +.   ...++|++|.|+++.++.     +....++|+.|++++ +.++.     +....+.|++|
T Consensus        39 ~l~~LdLs~~~L~~-lp---~~~~~L~~L~Ls~N~l~~-----lp~~~~~L~~L~l~~-n~l~~-----l~~lp~~L~~L  103 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LP---ELPPHLESLVASCNSLTE-----LPELPQSLKSLLVDN-NNLKA-----LSDLPPLLEYL  103 (353)
T ss_dssp             TCSEEECTTSCCSC-CC---SCCTTCSEEECCSSCCSS-----CCCCCTTCCEEECCS-SCCSC-----CCSCCTTCCEE
T ss_pred             CCCEEEeCCCCCCC-CC---CCCCCCCEEECCCCCCcc-----cccchhhhhhhhhhh-cccch-----hhhhccccccc
Confidence            36777776643111 11   224677888887776652     223346777887776 34431     11122457777


Q ss_pred             eccccccCCCCCCCCchHHHHHHhcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCe
Q 020754          162 CRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLK  241 (322)
Q Consensus       162 ~l~~~~l~~~~~~~~~~~~~~l~~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk  241 (322)
                      .++.+.+.  .  +     ..+ ..+++|++|+++++.++..     ....+.+..+.+..+.....   .....++.++
T Consensus       104 ~L~~n~l~--~--l-----p~~-~~l~~L~~L~l~~~~~~~~-----~~~~~~l~~l~~~~~~~~~~---~~l~~l~~l~  165 (353)
T d1jl5a_         104 GVSNNQLE--K--L-----PEL-QNSSFLKIIDVDNNSLKKL-----PDLPPSLEFIAAGNNQLEEL---PELQNLPFLT  165 (353)
T ss_dssp             ECCSSCCS--S--C-----CCC-TTCTTCCEEECCSSCCSCC-----CCCCTTCCEEECCSSCCSSC---CCCTTCTTCC
T ss_pred             cccccccc--c--c-----cch-hhhccceeecccccccccc-----ccccccccchhhcccccccc---ccccccccce
Confidence            66544331  1  0     011 2566777777777654321     12345666666665543321   1123445555


Q ss_pred             eeC
Q 020754          242 VLG  244 (322)
Q Consensus       242 ~L~  244 (322)
                      .|.
T Consensus       166 ~L~  168 (353)
T d1jl5a_         166 AIY  168 (353)
T ss_dssp             EEE
T ss_pred             ecc
Confidence            553

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0003  Score=53.93  Aligned_cols=107  Identities=20%  Similarity=0.147  Sum_probs=48.9

Q ss_pred             CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHH
Q 020754          105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  184 (322)
Q Consensus       105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~  184 (322)
                      ...+.++..+.+++.. ... ...+++|++|++.+.+.++.-...++ ..+++|+.|.++.+.+..       -...++ 
T Consensus         8 ~~~~~l~c~~~~~~~~-p~~-l~~l~~l~~L~l~~n~~l~~i~~~~f-~~l~~L~~L~Ls~N~l~~-------i~~~~f-   76 (156)
T d2ifga3           8 HGSSGLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKSGLRF-------VAPDAF-   76 (156)
T ss_dssp             SSSSCEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGS-CSCCCCSEEECCSSCCCE-------ECTTGG-
T ss_pred             CCCCeEEecCCCCccC-ccc-ccCccccCeeecCCCccccccCchhh-ccccccCcceeeccccCC-------cccccc-
Confidence            3445566655533321 111 13346777777765333432111111 234566666554443311       001122 


Q ss_pred             hcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCC
Q 020754          185 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW  224 (322)
Q Consensus       185 ~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~  224 (322)
                      ..+++|++|+|++|.++.-.. .++ ...+|+.|+|++++
T Consensus        77 ~~l~~L~~L~Ls~N~l~~l~~-~~~-~~~~l~~L~L~~Np  114 (156)
T d2ifga3          77 HFTPRLSRLNLSFNALESLSW-KTV-QGLSLQELVLSGNP  114 (156)
T ss_dssp             GSCSCCCEEECCSSCCSCCCS-TTT-CSCCCCEEECCSSC
T ss_pred             cccccccceeccCCCCcccCh-hhh-ccccccccccCCCc
Confidence            256777777777776542110 111 23457777777664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=3.3e-05  Score=63.61  Aligned_cols=85  Identities=12%  Similarity=0.045  Sum_probs=45.2

Q ss_pred             CeeEEEecCCCChHHHHHHHHhCCCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCccee
Q 020754           82 SLRKLCVSGLHNDMMFSLIAENAGSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVL  161 (322)
Q Consensus        82 ~l~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L  161 (322)
                      .++.|++++..-...-......+++|+.|.|++|.+....-......++++++|.+..++.+....... ...+++|+.|
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~-~~~l~~L~~l  108 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA-FQNLPNLQYL  108 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTS-EECCTTCCEE
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccccc-cccccccccc
Confidence            477888865331111111124578888888888744321101112345777777776665554322221 2456777777


Q ss_pred             eccccc
Q 020754          162 CRNMHP  167 (322)
Q Consensus       162 ~l~~~~  167 (322)
                      .+..+.
T Consensus       109 ~l~~~~  114 (242)
T d1xwdc1         109 LISNTG  114 (242)
T ss_dssp             EEESCC
T ss_pred             ccchhh
Confidence            765443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=95.60  E-value=0.00011  Score=63.02  Aligned_cols=57  Identities=14%  Similarity=0.032  Sum_probs=34.2

Q ss_pred             cCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCcCCChHHHHhcCCCCeeeCC
Q 020754          186 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP  245 (322)
Q Consensus       186 ~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~~~~~~~l~~~~~~Lk~L~~  245 (322)
                      .+++|+.|++.++.++.. +. -+..+++|+.|+|++|.....-... ...+++|++|.+
T Consensus       219 ~~~~l~~l~~~~~~l~~~-~~-~~~~~~~L~~L~Ls~N~l~g~iP~~-l~~L~~L~~L~L  275 (313)
T d1ogqa_         219 SDKNTQKIHLAKNSLAFD-LG-KVGLSKNLNGLDLRNNRIYGTLPQG-LTQLKFLHSLNV  275 (313)
T ss_dssp             TTSCCSEEECCSSEECCB-GG-GCCCCTTCCEEECCSSCCEECCCGG-GGGCTTCCEEEC
T ss_pred             cccccccccccccccccc-cc-ccccccccccccCccCeecccCChH-HhCCCCCCEEEC
Confidence            456788888887765432 11 1335678888888887533212222 346778887754

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.29  E-value=0.00011  Score=60.29  Aligned_cols=89  Identities=9%  Similarity=-0.025  Sum_probs=50.6

Q ss_pred             CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHH
Q 020754          105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  184 (322)
Q Consensus       105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~  184 (322)
                      +++++|+|+++.++.-.- ....++++|++|+++++ .+....-......++++++|.+....-      ....... ..
T Consensus        29 ~~l~~L~Ls~n~i~~l~~-~~f~~l~~L~~L~ls~n-~~~~~i~~~~f~~l~~l~~l~~~~~n~------l~~~~~~-~~   99 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQK-GAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEKANN------LLYINPE-AF   99 (242)
T ss_dssp             SCCSEEEEESCCCCEECT-TTTTTCTTCCEEEEESC-TTCCEECSSSEESCTTCCEEEEECCTT------CCEECTT-SE
T ss_pred             CCCCEEECcCCcCCccCh-hHhhccchhhhhhhccc-cccceeecccccccccccccccccccc------ccccccc-cc
Confidence            489999999987652111 12256799999999984 332211111123467777776532110      1011111 12


Q ss_pred             hcCCCCCEEEecCcccCH
Q 020754          185 STMPKLKRLEMAYHVIST  202 (322)
Q Consensus       185 ~~~p~L~~L~L~~~~i~~  202 (322)
                      ..+++|++|.+.++.++.
T Consensus       100 ~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1         100 QNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             ECCTTCCEEEEESCCCCS
T ss_pred             cccccccccccchhhhcc
Confidence            468899999999887654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.21  E-value=0.0032  Score=47.87  Aligned_cols=87  Identities=15%  Similarity=0.095  Sum_probs=53.0

Q ss_pred             hCCCCCEEecCCC-CCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHH
Q 020754          103 NAGSLQTLRLPRS-EMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEAN  181 (322)
Q Consensus       103 ~~~~L~~L~L~~~-~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~  181 (322)
                      ..++|++|.+.++ .++...... ...+++|+.|++++ +.++.-...+ ...+++|+.|.++.+.+..-.    ...  
T Consensus        29 ~l~~l~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~Ls~-N~l~~i~~~~-f~~l~~L~~L~Ls~N~l~~l~----~~~--   99 (156)
T d2ifga3          29 GAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVK-SGLRFVAPDA-FHFTPRLSRLNLSFNALESLS----WKT--   99 (156)
T ss_dssp             SCSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCS-SCCCEECTTG-GGSCSCCCEEECCSSCCSCCC----STT--
T ss_pred             CccccCeeecCCCccccccCchh-hccccccCcceeec-cccCCccccc-ccccccccceeccCCCCcccC----hhh--
Confidence            3568888888655 454321112 24568899999988 5665432222 245688999888766653211    111  


Q ss_pred             HHHhcCCCCCEEEecCcccC
Q 020754          182 AIASTMPKLKRLEMAYHVIS  201 (322)
Q Consensus       182 ~l~~~~p~L~~L~L~~~~i~  201 (322)
                        . ..++|++|+|++|.+.
T Consensus       100 --~-~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3         100 --V-QGLSLQELVLSGNPLH  116 (156)
T ss_dssp             --T-CSCCCCEEECCSSCCC
T ss_pred             --h-ccccccccccCCCccc
Confidence              1 2347999999998753

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=93.85  E-value=0.015  Score=49.11  Aligned_cols=96  Identities=15%  Similarity=0.138  Sum_probs=66.6

Q ss_pred             CCCCEEecCCCCCCHHHHHHHHhcCCCccEEeccCCCCCCHHHHHHHHhcCCCcceeeccccccCCCCCCCCchHHHHHH
Q 020754          105 GSLQTLRLPRSEMSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA  184 (322)
Q Consensus       105 ~~L~~L~L~~~~i~~~~l~~l~~~~~~L~~L~l~~c~~i~~~~l~~l~~~c~~L~~L~l~~~~l~~~~~~~~~~~~~~l~  184 (322)
                      .+|+.|+|++++++.  +   ....++|++|++++ +.++.     +....++|+.|.+....+..            +.
T Consensus        38 ~~l~~LdLs~~~L~~--l---p~~~~~L~~L~Ls~-N~l~~-----lp~~~~~L~~L~l~~n~l~~------------l~   94 (353)
T d1jl5a_          38 RQAHELELNNLGLSS--L---PELPPHLESLVASC-NSLTE-----LPELPQSLKSLLVDNNNLKA------------LS   94 (353)
T ss_dssp             HTCSEEECTTSCCSC--C---CSCCTTCSEEECCS-SCCSS-----CCCCCTTCCEEECCSSCCSC------------CC
T ss_pred             cCCCEEEeCCCCCCC--C---CCCCCCCCEEECCC-CCCcc-----cccchhhhhhhhhhhcccch------------hh
Confidence            489999999997752  2   23458999999996 67762     22345789999876554321            11


Q ss_pred             hcCCCCCEEEecCcccCHHHHHHHHhcCCCCCEEeecCCCCc
Q 020754          185 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV  226 (322)
Q Consensus       185 ~~~p~L~~L~L~~~~i~~~~l~~i~~~~~~L~~L~L~~c~~~  226 (322)
                      .-.++|++|++++|.++.-  .. ...+++|++|+++++...
T Consensus        95 ~lp~~L~~L~L~~n~l~~l--p~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_          95 DLPPLLEYLGVSNNQLEKL--PE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             SCCTTCCEEECCSSCCSSC--CC-CTTCTTCCEEECCSSCCS
T ss_pred             hhccccccccccccccccc--cc-hhhhccceeecccccccc
Confidence            1235799999999987532  12 346899999999988544