Query 020756
Match_columns 321
No_of_seqs 276 out of 2312
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 04:54:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020756.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020756hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2315 Predicted translation 100.0 1.3E-61 2.8E-66 450.2 24.7 227 2-229 191-418 (566)
2 PF08662 eIF2A: Eukaryotic tra 100.0 2E-42 4.3E-47 298.0 23.3 194 24-217 1-194 (194)
3 COG5354 Uncharacterized protei 100.0 1.3E-40 2.7E-45 307.1 19.9 247 2-278 199-446 (561)
4 KOG2314 Translation initiation 100.0 5.4E-28 1.2E-32 225.4 12.4 227 3-237 371-610 (698)
5 KOG0272 U4/U6 small nuclear ri 99.9 2.5E-23 5.4E-28 188.9 14.1 202 2-229 238-448 (459)
6 KOG0272 U4/U6 small nuclear ri 99.9 3.3E-22 7.1E-27 181.6 13.6 199 4-227 196-403 (459)
7 KOG0279 G protein beta subunit 99.9 9.4E-20 2E-24 158.2 20.5 203 2-229 82-301 (315)
8 KOG0271 Notchless-like WD40 re 99.8 9.4E-20 2E-24 164.1 16.7 202 2-230 224-470 (480)
9 KOG0315 G-protein beta subunit 99.8 1.2E-18 2.5E-23 149.4 20.7 201 5-230 61-277 (311)
10 KOG0263 Transcription initiati 99.8 2.5E-19 5.3E-24 173.6 16.8 174 3-202 471-649 (707)
11 KOG0279 G protein beta subunit 99.8 3.6E-18 7.8E-23 148.4 20.8 210 5-237 38-259 (315)
12 KOG0273 Beta-transducin family 99.8 2.6E-18 5.7E-23 158.2 20.5 200 1-227 294-509 (524)
13 KOG0284 Polyadenylation factor 99.8 1.3E-19 2.8E-24 164.2 9.8 201 4-230 117-325 (464)
14 KOG0263 Transcription initiati 99.8 1.4E-18 2.9E-23 168.5 17.3 190 26-238 449-647 (707)
15 KOG0271 Notchless-like WD40 re 99.8 2.1E-18 4.5E-23 155.4 16.6 201 3-230 135-428 (480)
16 KOG0264 Nucleosome remodeling 99.8 1.8E-18 3.9E-23 158.6 16.5 224 3-245 145-409 (422)
17 KOG0291 WD40-repeat-containing 99.8 1.2E-17 2.7E-22 161.2 22.1 200 5-229 287-538 (893)
18 KOG1407 WD40 repeat protein [F 99.8 1.2E-17 2.6E-22 144.1 18.8 196 4-227 86-288 (313)
19 KOG0273 Beta-transducin family 99.8 8.6E-18 1.9E-22 154.8 19.1 199 3-229 255-470 (524)
20 KOG0266 WD40 repeat-containing 99.8 1.4E-17 2.9E-22 161.7 20.3 186 29-237 160-361 (456)
21 KOG0284 Polyadenylation factor 99.8 1.3E-18 2.8E-23 157.8 10.6 186 28-236 96-290 (464)
22 KOG0266 WD40 repeat-containing 99.8 5.7E-17 1.2E-21 157.3 22.4 201 3-229 179-397 (456)
23 cd00200 WD40 WD40 domain, foun 99.8 2.9E-16 6.3E-21 138.5 24.5 202 2-229 70-279 (289)
24 KOG0315 G-protein beta subunit 99.8 1.7E-16 3.7E-21 136.2 20.3 183 2-212 102-301 (311)
25 KOG0318 WD40 repeat stress pro 99.8 2.2E-16 4.8E-21 147.3 22.5 178 4-204 80-267 (603)
26 cd00200 WD40 WD40 domain, foun 99.8 5.8E-16 1.3E-20 136.6 24.5 200 3-228 29-236 (289)
27 KOG0645 WD40 repeat protein [G 99.7 1.8E-15 3.9E-20 131.3 22.6 194 2-220 34-242 (312)
28 KOG0286 G-protein beta subunit 99.7 1.6E-15 3.5E-20 132.8 22.4 204 2-229 116-333 (343)
29 KOG1274 WD40 repeat protein [G 99.7 4.5E-16 9.8E-21 153.2 20.4 196 4-226 75-285 (933)
30 PTZ00420 coronin; Provisional 99.7 4.8E-15 1E-19 145.7 26.9 183 2-202 51-248 (568)
31 PRK03629 tolB translocation pr 99.7 2.1E-15 4.6E-20 145.3 22.7 201 5-222 223-428 (429)
32 KOG0302 Ribosome Assembly prot 99.7 3.5E-16 7.6E-21 140.9 15.0 205 3-228 173-425 (440)
33 KOG0282 mRNA splicing factor [ 99.7 3E-16 6.6E-21 145.1 14.9 202 2-228 234-491 (503)
34 PTZ00421 coronin; Provisional 99.7 1.3E-14 2.9E-19 141.3 26.9 184 2-203 95-291 (493)
35 KOG0291 WD40-repeat-containing 99.7 3.6E-15 7.8E-20 144.3 21.0 190 2-205 369-615 (893)
36 KOG0645 WD40 repeat protein [G 99.7 8.4E-15 1.8E-19 127.1 20.9 186 24-232 10-216 (312)
37 PRK05137 tolB translocation pr 99.7 9.4E-15 2E-19 141.1 23.0 206 6-228 183-393 (435)
38 KOG0305 Anaphase promoting com 99.7 2.8E-15 6.1E-20 142.8 18.5 204 4-229 238-449 (484)
39 KOG0293 WD40 repeat-containing 99.7 1.9E-15 4.1E-20 137.6 16.3 202 4-229 245-500 (519)
40 PTZ00421 coronin; Provisional 99.7 9.1E-15 2E-19 142.5 21.7 139 79-228 72-228 (493)
41 PRK01742 tolB translocation pr 99.7 1.1E-14 2.3E-19 140.5 21.4 192 5-222 228-426 (429)
42 KOG0772 Uncharacterized conser 99.7 9.1E-16 2E-20 143.0 13.2 184 32-229 272-475 (641)
43 PLN00181 protein SPA1-RELATED; 99.7 2.1E-14 4.5E-19 148.6 24.4 200 2-229 552-781 (793)
44 PRK05137 tolB translocation pr 99.7 2.3E-14 5E-19 138.4 23.1 204 5-222 226-433 (435)
45 KOG0319 WD40-repeat-containing 99.7 7.7E-15 1.7E-19 141.7 18.8 208 2-229 384-607 (775)
46 PTZ00420 coronin; Provisional 99.7 6.5E-14 1.4E-18 137.8 25.7 203 2-224 94-319 (568)
47 KOG0265 U5 snRNP-specific prot 99.7 9.4E-15 2E-19 128.4 17.6 189 19-229 38-234 (338)
48 PRK03629 tolB translocation pr 99.6 4.6E-14 9.9E-19 136.1 23.8 208 5-229 179-391 (429)
49 PRK04922 tolB translocation pr 99.6 3.1E-14 6.7E-19 137.5 22.5 199 5-221 228-432 (433)
50 KOG0772 Uncharacterized conser 99.6 2.7E-15 5.9E-20 139.9 14.1 202 3-229 187-427 (641)
51 KOG0305 Anaphase promoting com 99.6 9.7E-15 2.1E-19 139.1 17.5 179 3-204 278-463 (484)
52 KOG0286 G-protein beta subunit 99.6 3.6E-14 7.9E-19 124.4 19.0 171 4-200 165-343 (343)
53 PRK04922 tolB translocation pr 99.6 5.5E-14 1.2E-18 135.7 22.3 206 6-228 185-395 (433)
54 KOG0265 U5 snRNP-specific prot 99.6 1.6E-14 3.4E-19 127.0 16.6 202 2-229 109-326 (338)
55 PRK02889 tolB translocation pr 99.6 8.7E-14 1.9E-18 134.1 23.3 197 19-229 186-388 (427)
56 KOG0973 Histone transcription 99.6 1.1E-14 2.3E-19 145.9 17.2 139 80-229 67-237 (942)
57 PRK01742 tolB translocation pr 99.6 4.1E-14 8.8E-19 136.5 20.5 198 5-229 184-389 (429)
58 KOG1407 WD40 repeat protein [F 99.6 4.9E-14 1.1E-18 121.9 18.4 203 4-230 41-250 (313)
59 PRK02889 tolB translocation pr 99.6 8.8E-14 1.9E-18 134.0 22.1 200 5-222 220-425 (427)
60 PLN00181 protein SPA1-RELATED; 99.6 2.2E-13 4.7E-18 141.0 26.3 203 2-229 502-726 (793)
61 KOG0973 Histone transcription 99.6 3.6E-14 7.7E-19 142.2 19.4 212 3-221 35-275 (942)
62 KOG0289 mRNA splicing factor [ 99.6 6.2E-14 1.3E-18 128.5 18.6 202 2-229 238-450 (506)
63 KOG0293 WD40 repeat-containing 99.6 4.6E-15 1E-19 135.1 11.2 143 76-229 218-372 (519)
64 PRK01029 tolB translocation pr 99.6 1.5E-13 3.2E-18 132.4 22.3 205 8-227 166-386 (428)
65 KOG0306 WD40-repeat-containing 99.6 6E-14 1.3E-18 135.9 19.1 208 2-237 391-619 (888)
66 KOG0310 Conserved WD40 repeat- 99.6 8.4E-14 1.8E-18 129.2 19.2 201 2-228 87-296 (487)
67 KOG0277 Peroxisomal targeting 99.6 2.1E-14 4.6E-19 123.7 13.4 201 4-228 82-295 (311)
68 KOG0310 Conserved WD40 repeat- 99.6 9.1E-14 2E-18 128.9 18.1 200 5-229 48-256 (487)
69 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 1.4E-12 2.9E-17 118.0 25.8 201 2-227 8-222 (300)
70 TIGR03866 PQQ_ABC_repeats PQQ- 99.6 1.2E-12 2.6E-17 118.3 25.2 203 3-229 51-266 (300)
71 KOG0269 WD40 repeat-containing 99.6 3.1E-14 6.8E-19 138.2 15.2 199 4-222 109-320 (839)
72 KOG1446 Histone H3 (Lys4) meth 99.6 6.3E-13 1.4E-17 117.7 21.6 203 4-230 35-294 (311)
73 PRK01029 tolB translocation pr 99.6 6.8E-13 1.5E-17 127.8 23.7 191 20-223 222-426 (428)
74 PRK04792 tolB translocation pr 99.6 5.4E-13 1.2E-17 129.3 23.1 190 23-228 212-409 (448)
75 KOG0296 Angio-associated migra 99.6 2.7E-13 5.8E-18 122.0 19.0 204 2-229 125-386 (399)
76 PF08662 eIF2A: Eukaryotic tra 99.6 1.2E-13 2.6E-18 119.0 16.1 139 86-229 9-161 (194)
77 PRK04792 tolB translocation pr 99.6 5.4E-13 1.2E-17 129.3 22.4 200 6-222 243-447 (448)
78 KOG0295 WD40 repeat-containing 99.6 9.3E-14 2E-18 124.9 15.6 198 7-229 174-394 (406)
79 KOG0277 Peroxisomal targeting 99.6 1.9E-13 4E-18 117.9 16.8 204 2-229 33-252 (311)
80 PRK00178 tolB translocation pr 99.6 9.5E-13 2.1E-17 126.9 23.5 196 20-228 190-390 (430)
81 KOG0276 Vesicle coat complex C 99.5 2.1E-13 4.5E-18 129.9 17.1 198 4-227 76-285 (794)
82 PRK00178 tolB translocation pr 99.5 1.2E-12 2.6E-17 126.2 22.3 200 6-222 224-428 (430)
83 KOG0295 WD40 repeat-containing 99.5 4.7E-13 1E-17 120.4 17.8 174 3-201 213-405 (406)
84 KOG0283 WD40 repeat-containing 99.5 2.9E-13 6.4E-18 132.6 17.9 134 80-225 367-515 (712)
85 KOG0289 mRNA splicing factor [ 99.5 5.1E-13 1.1E-17 122.6 18.1 164 4-186 282-452 (506)
86 KOG0640 mRNA cleavage stimulat 99.5 1.4E-13 3E-18 121.7 13.9 195 20-237 104-332 (430)
87 KOG0292 Vesicle coat complex C 99.5 1.4E-13 3E-18 135.4 15.3 187 30-240 11-236 (1202)
88 TIGR02800 propeller_TolB tol-p 99.5 2E-12 4.4E-17 123.8 23.1 186 27-228 188-381 (417)
89 KOG0643 Translation initiation 99.5 1.6E-12 3.5E-17 112.9 19.5 213 3-229 72-305 (327)
90 KOG0296 Angio-associated migra 99.5 1.7E-12 3.6E-17 116.9 20.1 163 23-210 59-229 (399)
91 PRK04043 tolB translocation pr 99.5 2.5E-12 5.5E-17 123.3 22.7 196 6-219 214-419 (419)
92 KOG0275 Conserved WD40 repeat- 99.5 2.6E-14 5.7E-19 126.8 8.1 165 20-206 204-383 (508)
93 KOG0640 mRNA cleavage stimulat 99.5 2.4E-13 5.3E-18 120.2 13.4 184 2-206 131-340 (430)
94 PRK04043 tolB translocation pr 99.5 6.2E-12 1.3E-16 120.7 24.3 188 30-227 189-383 (419)
95 KOG0269 WD40 repeat-containing 99.5 1E-13 2.2E-18 134.7 11.7 181 30-229 89-281 (839)
96 KOG0306 WD40-repeat-containing 99.5 6.1E-13 1.3E-17 129.0 16.6 182 2-206 473-668 (888)
97 KOG0283 WD40 repeat-containing 99.5 1.1E-13 2.3E-18 135.7 11.5 136 80-227 265-467 (712)
98 KOG1332 Vesicle coat complex C 99.5 6.4E-13 1.4E-17 114.1 14.4 206 2-228 30-273 (299)
99 KOG0282 mRNA splicing factor [ 99.5 1.2E-13 2.6E-18 128.0 10.6 191 18-229 204-403 (503)
100 KOG0268 Sof1-like rRNA process 99.5 3.5E-13 7.5E-18 121.3 12.5 140 82-231 187-335 (433)
101 KOG0264 Nucleosome remodeling 99.5 2.8E-12 6E-17 118.2 18.5 184 2-205 197-407 (422)
102 KOG0276 Vesicle coat complex C 99.5 1.4E-12 3.1E-17 124.3 17.0 198 5-229 35-245 (794)
103 KOG0288 WD40 repeat protein Ti 99.5 1.2E-12 2.5E-17 119.5 15.6 199 3-230 239-450 (459)
104 KOG4378 Nuclear protein COP1 [ 99.5 2.2E-12 4.7E-17 120.2 17.5 202 2-228 98-309 (673)
105 KOG0316 Conserved WD40 repeat- 99.5 3E-12 6.4E-17 109.5 16.7 184 2-213 36-227 (307)
106 KOG0318 WD40 repeat stress pro 99.5 2E-12 4.3E-17 121.2 16.4 129 62-202 467-602 (603)
107 KOG2055 WD40 repeat protein [G 99.5 4.8E-12 1E-16 117.0 18.8 203 2-227 232-451 (514)
108 KOG0285 Pleiotropic regulator 99.5 3E-12 6.5E-17 115.2 16.9 178 2-206 170-353 (460)
109 KOG0639 Transducin-like enhanc 99.5 9.5E-13 2.1E-17 122.7 13.8 212 2-237 437-660 (705)
110 TIGR02800 propeller_TolB tol-p 99.5 1.4E-11 3.1E-16 117.9 22.2 185 5-206 214-401 (417)
111 KOG0313 Microtubule binding pr 99.4 4.6E-12 1E-16 114.6 16.7 210 3-237 123-373 (423)
112 KOG0316 Conserved WD40 repeat- 99.4 7.2E-12 1.5E-16 107.2 16.2 200 2-229 78-288 (307)
113 PRK11028 6-phosphogluconolacto 99.4 5E-11 1.1E-15 110.8 23.4 207 3-229 10-245 (330)
114 KOG0308 Conserved WD40 repeat- 99.4 3.4E-12 7.3E-17 122.2 15.4 205 2-229 44-273 (735)
115 KOG2110 Uncharacterized conser 99.4 4E-11 8.7E-16 108.4 21.0 176 2-205 65-251 (391)
116 KOG0639 Transducin-like enhanc 99.4 8.9E-13 1.9E-17 122.9 10.5 170 49-229 426-610 (705)
117 KOG1274 WD40 repeat protein [G 99.4 1.6E-11 3.5E-16 121.5 19.3 138 81-229 95-250 (933)
118 KOG0275 Conserved WD40 repeat- 99.4 2.1E-13 4.5E-18 121.2 4.6 143 77-230 208-367 (508)
119 KOG0647 mRNA export protein (c 99.4 2.4E-11 5.1E-16 107.3 16.9 153 29-203 28-185 (347)
120 KOG0313 Microtubule binding pr 99.4 3.7E-11 8E-16 108.8 18.3 213 2-229 166-406 (423)
121 KOG2394 WD40 protein DMR-N9 [G 99.4 3.6E-12 7.8E-17 119.8 12.2 97 116-221 281-384 (636)
122 KOG0268 Sof1-like rRNA process 99.4 3.1E-12 6.6E-17 115.2 10.8 171 6-202 168-345 (433)
123 KOG2096 WD40 repeat protein [G 99.4 3.1E-11 6.8E-16 107.3 16.5 179 3-202 106-308 (420)
124 KOG0307 Vesicle coat complex C 99.4 2.9E-12 6.3E-17 129.4 10.8 209 2-229 87-314 (1049)
125 KOG0285 Pleiotropic regulator 99.4 4.2E-11 9.1E-16 107.9 16.9 164 63-237 174-345 (460)
126 KOG0641 WD40 repeat protein [G 99.4 2.1E-10 4.6E-15 97.7 20.2 120 101-229 199-337 (350)
127 KOG0278 Serine/threonine kinas 99.4 2.3E-11 4.9E-16 105.0 14.1 173 3-202 120-297 (334)
128 KOG1524 WD40 repeat-containing 99.3 1.7E-11 3.7E-16 115.3 13.4 164 29-228 105-273 (737)
129 KOG0319 WD40-repeat-containing 99.3 4.7E-11 1E-15 115.9 16.3 177 2-201 431-618 (775)
130 KOG1446 Histone H3 (Lys4) meth 99.3 2E-10 4.4E-15 101.9 18.6 180 27-228 13-204 (311)
131 KOG1273 WD40 repeat protein [G 99.3 8.6E-11 1.9E-15 104.4 16.0 201 3-230 43-312 (405)
132 KOG0303 Actin-binding protein 99.3 3.1E-11 6.8E-16 109.9 13.3 117 80-206 79-208 (472)
133 KOG0267 Microtubule severing p 99.3 2.7E-12 5.8E-17 124.2 6.7 138 80-228 68-213 (825)
134 KOG2096 WD40 repeat protein [G 99.3 4.1E-11 8.8E-16 106.6 13.5 171 4-200 208-400 (420)
135 KOG0292 Vesicle coat complex C 99.3 9.9E-11 2.1E-15 115.7 17.1 207 4-238 30-278 (1202)
136 KOG1539 WD repeat protein [Gen 99.3 6.5E-11 1.4E-15 116.3 15.8 169 4-201 469-647 (910)
137 KOG0643 Translation initiation 99.3 6.7E-10 1.5E-14 96.8 20.1 156 62-227 74-247 (327)
138 KOG0267 Microtubule severing p 99.3 7.9E-12 1.7E-16 121.0 9.1 199 6-230 51-257 (825)
139 KOG1007 WD repeat protein TSSC 99.3 6.6E-11 1.4E-15 104.0 14.0 199 6-230 94-349 (370)
140 PRK11028 6-phosphogluconolacto 99.3 9.8E-10 2.1E-14 102.2 23.0 206 4-229 56-291 (330)
141 KOG1539 WD repeat protein [Gen 99.3 9.1E-11 2E-15 115.3 16.4 203 5-229 422-635 (910)
142 KOG0302 Ribosome Assembly prot 99.3 8E-11 1.7E-15 106.7 14.7 146 81-239 210-377 (440)
143 KOG0278 Serine/threonine kinas 99.3 3.2E-11 7E-16 104.1 11.3 137 80-228 141-284 (334)
144 KOG1273 WD40 repeat protein [G 99.3 1.4E-11 3.1E-16 109.3 9.1 101 118-227 18-122 (405)
145 KOG0771 Prolactin regulatory e 99.3 1.7E-10 3.7E-15 105.8 15.5 177 2-203 163-355 (398)
146 KOG4283 Transcription-coupled 99.3 2.7E-10 5.9E-15 100.5 15.8 180 2-201 63-275 (397)
147 KOG2315 Predicted translation 99.3 2.6E-10 5.6E-15 108.0 16.7 136 28-177 270-411 (566)
148 KOG2139 WD40 repeat protein [G 99.3 7.6E-10 1.6E-14 100.1 18.8 166 4-186 119-300 (445)
149 KOG1009 Chromatin assembly com 99.3 1E-10 2.2E-15 106.9 13.3 138 81-229 12-183 (434)
150 KOG0281 Beta-TrCP (transducin 99.2 1.4E-11 3.1E-16 110.5 7.5 185 3-219 255-457 (499)
151 KOG2110 Uncharacterized conser 99.2 1.6E-09 3.4E-14 98.1 20.7 201 2-229 23-236 (391)
152 KOG1538 Uncharacterized conser 99.2 6E-11 1.3E-15 114.1 12.1 169 30-224 14-189 (1081)
153 KOG0294 WD40 repeat-containing 99.2 1.4E-09 3E-14 96.7 19.7 178 2-204 60-283 (362)
154 KOG1445 Tumor-specific antigen 99.2 3.2E-11 7E-16 115.4 10.0 110 81-201 626-749 (1012)
155 KOG1524 WD40 repeat-containing 99.2 5.6E-11 1.2E-15 111.9 11.2 146 66-224 89-240 (737)
156 KOG4497 Uncharacterized conser 99.2 7.4E-10 1.6E-14 99.1 17.3 206 3-227 69-377 (447)
157 KOG1332 Vesicle coat complex C 99.2 2.8E-10 6E-15 98.0 13.8 178 3-202 78-286 (299)
158 KOG2055 WD40 repeat protein [G 99.2 2.6E-10 5.5E-15 105.7 14.4 174 32-227 307-498 (514)
159 KOG1523 Actin-related protein 99.2 2.8E-10 6.1E-15 101.3 14.1 184 23-227 5-222 (361)
160 KOG0294 WD40 repeat-containing 99.2 2.7E-10 5.8E-15 101.2 13.9 134 81-227 42-184 (362)
161 COG5354 Uncharacterized protei 99.2 3.7E-10 8.1E-15 105.9 15.5 185 27-230 273-463 (561)
162 KOG0288 WD40 repeat protein Ti 99.2 3E-10 6.4E-15 104.0 13.9 125 64-200 324-459 (459)
163 KOG0650 WD40 repeat nucleolar 99.2 2E-10 4.3E-15 109.4 12.6 205 4-230 496-724 (733)
164 KOG0650 WD40 repeat nucleolar 99.2 2.6E-10 5.7E-15 108.6 13.2 214 2-229 419-668 (733)
165 COG4946 Uncharacterized protei 99.2 2.1E-09 4.6E-14 100.2 18.3 155 64-227 343-504 (668)
166 KOG0290 Conserved WD40 repeat- 99.2 1.8E-09 4E-14 95.1 16.3 201 5-225 121-349 (364)
167 COG0823 TolB Periplasmic compo 99.2 1.9E-09 4.2E-14 103.2 18.0 198 5-221 218-423 (425)
168 KOG1007 WD repeat protein TSSC 99.2 1.2E-09 2.7E-14 96.1 14.9 209 5-229 40-276 (370)
169 KOG0641 WD40 repeat protein [G 99.2 1.4E-09 3E-14 92.8 14.5 139 80-229 87-291 (350)
170 KOG0321 WD40 repeat-containing 99.1 3.5E-10 7.7E-15 108.4 12.0 199 3-223 72-372 (720)
171 KOG2919 Guanine nucleotide-bin 99.1 1.2E-09 2.5E-14 97.6 14.2 178 31-229 161-358 (406)
172 KOG0303 Actin-binding protein 99.1 6E-09 1.3E-13 95.2 18.7 184 2-205 101-297 (472)
173 KOG2111 Uncharacterized conser 99.1 1.6E-08 3.5E-13 90.2 20.9 175 3-205 73-259 (346)
174 KOG1036 Mitotic spindle checkp 99.1 3E-09 6.5E-14 94.3 15.9 149 28-202 13-163 (323)
175 KOG2139 WD40 repeat protein [G 99.1 1.5E-09 3.2E-14 98.2 14.2 135 82-227 140-296 (445)
176 KOG0281 Beta-TrCP (transducin 99.1 3.9E-10 8.5E-15 101.4 10.0 182 4-219 216-408 (499)
177 KOG0647 mRNA export protein (c 99.1 2E-09 4.4E-14 95.2 14.1 117 77-203 22-146 (347)
178 KOG0274 Cdc4 and related F-box 99.1 4.2E-09 9.1E-14 103.5 17.8 186 4-220 270-463 (537)
179 KOG2394 WD40 protein DMR-N9 [G 99.1 4E-10 8.8E-15 106.2 9.9 90 82-176 290-384 (636)
180 KOG4378 Nuclear protein COP1 [ 99.1 1E-09 2.2E-14 102.7 12.1 201 6-229 13-226 (673)
181 KOG0646 WD40 repeat protein [G 99.1 8.6E-09 1.9E-13 95.8 18.0 202 3-228 101-336 (476)
182 KOG1009 Chromatin assembly com 99.1 1.9E-09 4E-14 98.7 13.2 101 81-186 64-185 (434)
183 KOG2106 Uncharacterized conser 99.1 7.3E-09 1.6E-13 97.2 16.9 111 78-200 403-519 (626)
184 KOG2106 Uncharacterized conser 99.1 4.3E-08 9.4E-13 92.1 21.8 140 77-229 363-509 (626)
185 KOG0307 Vesicle coat complex C 99.1 7.8E-10 1.7E-14 112.1 10.9 180 3-205 137-330 (1049)
186 KOG0771 Prolactin regulatory e 99.1 2.6E-09 5.7E-14 98.1 13.2 132 86-229 148-342 (398)
187 KOG4328 WD40 protein [Function 99.1 6.4E-09 1.4E-13 96.5 15.8 159 60-229 301-482 (498)
188 PF10282 Lactonase: Lactonase, 99.1 2.6E-07 5.6E-12 86.7 27.1 178 4-202 108-322 (345)
189 KOG0300 WD40 repeat-containing 99.1 4.6E-09 1E-13 93.6 14.1 183 3-203 168-387 (481)
190 COG2319 FOG: WD40 repeat [Gene 99.0 1.2E-07 2.5E-12 87.4 24.0 203 3-228 85-301 (466)
191 PF10282 Lactonase: Lactonase, 99.0 1.1E-07 2.5E-12 89.1 24.0 210 3-229 60-309 (345)
192 KOG0274 Cdc4 and related F-box 99.0 2.8E-08 6.1E-13 97.8 20.3 179 5-215 228-417 (537)
193 KOG0646 WD40 repeat protein [G 99.0 1.8E-08 3.8E-13 93.8 17.5 198 6-229 62-295 (476)
194 KOG1538 Uncharacterized conser 99.0 4.5E-08 9.8E-13 94.7 19.8 206 3-226 31-278 (1081)
195 KOG0270 WD40 repeat-containing 99.0 3.7E-08 8E-13 91.2 18.2 178 2-202 263-449 (463)
196 KOG2048 WD40 repeat protein [G 99.0 8.4E-08 1.8E-12 92.9 21.3 158 28-207 25-190 (691)
197 KOG0270 WD40 repeat-containing 99.0 3.5E-08 7.6E-13 91.3 17.3 179 32-229 247-436 (463)
198 KOG1034 Transcriptional repres 99.0 1.8E-08 3.8E-13 90.3 14.3 115 80-204 87-213 (385)
199 KOG1063 RNA polymerase II elon 99.0 1.2E-08 2.7E-13 98.8 14.0 175 5-202 552-763 (764)
200 KOG2314 Translation initiation 99.0 3.3E-09 7.2E-14 100.5 9.6 150 85-244 213-382 (698)
201 KOG1408 WD40 repeat protein [F 98.9 1.9E-08 4E-13 98.0 14.7 202 5-230 481-702 (1080)
202 KOG4497 Uncharacterized conser 98.9 2.2E-09 4.8E-14 96.1 7.5 141 27-185 7-152 (447)
203 KOG4283 Transcription-coupled 98.9 1.2E-08 2.6E-13 90.2 11.8 145 75-229 36-206 (397)
204 COG0823 TolB Periplasmic compo 98.9 3.4E-08 7.4E-13 94.7 15.9 146 30-186 194-345 (425)
205 KOG2048 WD40 repeat protein [G 98.9 7.5E-08 1.6E-12 93.2 17.6 176 2-203 87-276 (691)
206 KOG1063 RNA polymerase II elon 98.9 1.2E-08 2.6E-13 98.9 12.2 134 80-222 523-675 (764)
207 KOG1445 Tumor-specific antigen 98.9 1E-08 2.2E-13 98.5 11.6 125 66-201 61-199 (1012)
208 COG2319 FOG: WD40 repeat [Gene 98.9 1.2E-06 2.7E-11 80.5 25.3 193 4-221 133-337 (466)
209 KOG0290 Conserved WD40 repeat- 98.9 6.6E-08 1.4E-12 85.4 15.4 175 4-199 172-362 (364)
210 KOG1036 Mitotic spindle checkp 98.9 1.4E-07 3E-12 83.8 17.4 193 4-227 34-290 (323)
211 COG2706 3-carboxymuconate cycl 98.9 5.3E-07 1.2E-11 81.9 21.0 181 31-229 91-308 (346)
212 KOG0308 Conserved WD40 repeat- 98.9 1.1E-07 2.3E-12 91.9 17.3 177 4-203 94-286 (735)
213 PF02239 Cytochrom_D1: Cytochr 98.9 7.9E-07 1.7E-11 84.1 23.2 176 4-204 15-204 (369)
214 KOG1523 Actin-related protein 98.9 3.7E-08 8.1E-13 87.9 12.5 137 82-229 10-164 (361)
215 KOG0301 Phospholipase A2-activ 98.8 1.7E-07 3.6E-12 91.1 17.0 189 2-224 78-272 (745)
216 PF04762 IKI3: IKI3 family; I 98.8 7.7E-07 1.7E-11 93.1 23.3 136 84-227 211-364 (928)
217 KOG0299 U3 snoRNP-associated p 98.8 5.6E-08 1.2E-12 90.4 12.9 189 22-222 136-338 (479)
218 KOG0299 U3 snoRNP-associated p 98.8 3.3E-07 7.2E-12 85.3 17.3 201 2-229 221-443 (479)
219 KOG0301 Phospholipase A2-activ 98.8 2.7E-07 5.8E-12 89.7 17.1 163 5-202 122-288 (745)
220 KOG0300 WD40 repeat-containing 98.8 1.9E-07 4E-12 83.5 14.7 181 20-224 264-457 (481)
221 KOG2445 Nuclear pore complex c 98.8 1.1E-06 2.3E-11 78.4 19.2 215 3-231 33-308 (361)
222 KOG1408 WD40 repeat protein [F 98.8 1.9E-07 4.1E-12 91.1 15.4 174 4-201 525-712 (1080)
223 KOG0322 G-protein beta subunit 98.8 1.3E-07 2.8E-12 82.6 12.7 110 81-201 204-322 (323)
224 KOG1963 WD40 repeat protein [G 98.8 2.6E-07 5.6E-12 91.8 15.8 112 79-201 202-321 (792)
225 KOG4328 WD40 protein [Function 98.7 3.6E-07 7.7E-12 85.1 15.5 175 6-201 302-494 (498)
226 KOG2111 Uncharacterized conser 98.7 1.3E-06 2.7E-11 78.3 18.0 203 7-230 28-245 (346)
227 KOG4547 WD40 repeat-containing 98.7 1.3E-06 2.8E-11 83.6 19.1 113 79-203 99-221 (541)
228 KOG1034 Transcriptional repres 98.7 3.6E-07 7.7E-12 82.0 13.9 149 79-239 35-210 (385)
229 KOG1188 WD40 repeat protein [G 98.7 7.9E-07 1.7E-11 80.2 15.3 177 5-202 50-242 (376)
230 KOG2919 Guanine nucleotide-bin 98.7 6.3E-07 1.4E-11 80.4 14.2 168 2-185 176-359 (406)
231 KOG2445 Nuclear pore complex c 98.6 8.2E-07 1.8E-11 79.1 13.9 113 78-201 9-143 (361)
232 KOG4227 WD40 repeat protein [G 98.6 7.5E-07 1.6E-11 81.6 13.8 139 79-228 53-211 (609)
233 COG2706 3-carboxymuconate cycl 98.6 2E-05 4.3E-10 71.9 21.4 208 5-229 16-261 (346)
234 KOG3881 Uncharacterized conser 98.6 9.1E-06 2E-10 74.6 19.1 128 85-223 205-343 (412)
235 KOG0322 G-protein beta subunit 98.6 4.3E-06 9.2E-11 73.3 15.9 141 80-229 148-311 (323)
236 KOG1587 Cytoplasmic dynein int 98.6 1.8E-06 3.9E-11 84.9 15.3 179 3-202 313-516 (555)
237 PF04053 Coatomer_WDAD: Coatom 98.5 6.4E-06 1.4E-10 79.5 18.4 188 6-229 3-213 (443)
238 KOG0649 WD40 repeat protein [G 98.5 3E-06 6.5E-11 73.5 14.1 145 34-203 16-187 (325)
239 KOG2321 WD40 repeat protein [G 98.5 2.3E-06 5E-11 81.9 13.8 154 63-229 156-331 (703)
240 PF02239 Cytochrom_D1: Cytochr 98.5 2.9E-05 6.3E-10 73.5 20.8 158 62-229 16-189 (369)
241 KOG2321 WD40 repeat protein [G 98.4 8.2E-06 1.8E-10 78.2 15.9 140 86-237 137-299 (703)
242 KOG0321 WD40 repeat-containing 98.4 1.7E-06 3.7E-11 83.6 11.2 115 78-202 96-248 (720)
243 KOG1587 Cytoplasmic dynein int 98.4 1E-05 2.2E-10 79.7 16.8 191 30-230 182-460 (555)
244 KOG1272 WD40-repeat-containing 98.4 4.1E-07 8.9E-12 84.9 6.2 172 2-203 148-324 (545)
245 PF00930 DPPIV_N: Dipeptidyl p 98.4 1.4E-05 3E-10 75.3 16.2 142 37-185 1-202 (353)
246 KOG1272 WD40-repeat-containing 98.4 1.2E-06 2.5E-11 82.0 8.5 148 64-224 233-392 (545)
247 KOG1064 RAVE (regulator of V-A 98.4 1.2E-06 2.6E-11 92.9 9.0 171 2-206 2227-2402(2439)
248 PF11768 DUF3312: Protein of u 98.4 2.5E-05 5.4E-10 75.5 17.0 123 28-156 205-329 (545)
249 KOG1963 WD40 repeat protein [G 98.3 5.1E-05 1.1E-09 75.9 19.0 131 85-227 163-308 (792)
250 PF04762 IKI3: IKI3 family; I 98.3 3.3E-05 7.2E-10 81.0 18.3 189 30-229 23-274 (928)
251 KOG0649 WD40 repeat protein [G 98.3 0.00012 2.6E-09 63.7 18.0 153 60-228 134-302 (325)
252 KOG1310 WD40 repeat protein [G 98.3 6E-06 1.3E-10 78.8 10.9 139 80-229 48-218 (758)
253 PF11768 DUF3312: Protein of u 98.3 0.0002 4.4E-09 69.3 21.0 162 31-201 148-328 (545)
254 KOG1517 Guanine nucleotide bin 98.2 2.2E-05 4.8E-10 80.1 14.3 171 32-227 1169-1367(1387)
255 PF00930 DPPIV_N: Dipeptidyl p 98.2 0.00024 5.1E-09 66.9 20.3 201 5-227 23-296 (353)
256 COG4946 Uncharacterized protei 98.2 8.4E-05 1.8E-09 70.1 16.5 119 64-185 384-507 (668)
257 PF08450 SGL: SMP-30/Gluconola 98.2 0.0011 2.3E-08 58.9 23.3 138 82-227 85-241 (246)
258 KOG0974 WD-repeat protein WDR6 98.2 1.4E-05 3E-10 81.2 11.6 127 64-205 157-291 (967)
259 KOG0642 Cell-cycle nuclear pro 98.2 3.8E-05 8.2E-10 73.5 13.7 183 3-206 314-565 (577)
260 KOG2041 WD40 repeat protein [G 98.2 3.8E-05 8.2E-10 75.5 13.9 206 2-223 33-320 (1189)
261 KOG1188 WD40 repeat protein [G 98.2 3.1E-05 6.6E-10 70.1 12.0 207 2-229 91-334 (376)
262 KOG0642 Cell-cycle nuclear pro 98.2 8.1E-06 1.7E-10 78.0 8.7 116 80-206 292-430 (577)
263 TIGR02658 TTQ_MADH_Hv methylam 98.2 0.0011 2.4E-08 62.1 22.8 112 89-208 200-337 (352)
264 KOG1920 IkappaB kinase complex 98.1 0.00021 4.5E-09 74.2 19.0 133 87-223 200-346 (1265)
265 PLN02919 haloacid dehalogenase 98.1 0.00028 6.1E-09 75.4 20.9 111 84-204 741-890 (1057)
266 PF07433 DUF1513: Protein of u 98.1 0.00031 6.7E-09 63.9 17.4 175 4-185 76-275 (305)
267 KOG0280 Uncharacterized conser 98.1 0.00088 1.9E-08 59.8 19.3 129 85-224 124-266 (339)
268 PF15492 Nbas_N: Neuroblastoma 98.1 0.00079 1.7E-08 59.9 19.1 152 34-202 3-259 (282)
269 KOG3914 WD repeat protein WDR4 98.0 7.6E-05 1.6E-09 68.8 11.9 87 74-166 143-233 (390)
270 PF07433 DUF1513: Protein of u 98.0 0.0051 1.1E-07 56.1 23.3 201 7-229 30-274 (305)
271 PLN02919 haloacid dehalogenase 98.0 0.0025 5.5E-08 68.2 24.8 133 86-227 686-874 (1057)
272 PF00400 WD40: WD domain, G-be 98.0 2.2E-05 4.7E-10 48.7 5.6 35 117-154 3-39 (39)
273 KOG4547 WD40 repeat-containing 98.0 0.0002 4.3E-09 69.0 14.2 110 102-222 76-195 (541)
274 KOG0974 WD-repeat protein WDR6 98.0 0.00011 2.4E-09 74.8 13.0 126 94-230 143-277 (967)
275 KOG2695 WD40 repeat protein [G 98.0 5.4E-05 1.2E-09 68.8 9.6 137 61-210 233-385 (425)
276 KOG0280 Uncharacterized conser 97.9 0.00019 4.2E-09 63.9 12.6 197 4-221 94-311 (339)
277 PF00400 WD40: WD domain, G-be 97.9 3.5E-05 7.7E-10 47.7 5.9 37 158-200 1-39 (39)
278 KOG1354 Serine/threonine prote 97.9 0.00015 3.3E-09 65.9 12.1 136 81-229 163-347 (433)
279 PRK13616 lipoprotein LpqB; Pro 97.9 0.00071 1.5E-08 67.8 17.5 160 30-205 351-530 (591)
280 PF14583 Pectate_lyase22: Olig 97.9 0.0017 3.7E-08 61.0 18.5 182 35-227 42-253 (386)
281 PF08450 SGL: SMP-30/Gluconola 97.9 0.0029 6.2E-08 56.2 19.5 145 34-202 5-164 (246)
282 KOG3881 Uncharacterized conser 97.9 0.00031 6.7E-09 64.7 13.1 99 59-163 225-327 (412)
283 KOG3914 WD repeat protein WDR4 97.8 0.00029 6.4E-09 65.1 12.2 96 107-212 133-234 (390)
284 KOG4227 WD40 repeat protein [G 97.8 0.0011 2.4E-08 61.3 14.8 181 29-230 57-263 (609)
285 KOG1920 IkappaB kinase complex 97.7 0.0018 3.8E-08 67.6 17.4 180 30-228 70-306 (1265)
286 PRK02888 nitrous-oxide reducta 97.7 0.0033 7.3E-08 62.4 18.5 92 107-203 216-352 (635)
287 KOG0644 Uncharacterized conser 97.7 2.6E-05 5.7E-10 77.7 3.5 109 79-202 187-300 (1113)
288 PRK13616 lipoprotein LpqB; Pro 97.7 0.00094 2E-08 67.0 14.2 135 83-225 350-510 (591)
289 KOG4532 WD40-like repeat conta 97.7 0.005 1.1E-07 54.6 16.7 119 30-163 160-289 (344)
290 KOG1310 WD40 repeat protein [G 97.7 0.0001 2.3E-09 70.5 6.6 74 120-202 47-125 (758)
291 KOG1354 Serine/threonine prote 97.6 0.00027 5.8E-09 64.3 8.9 129 62-201 187-358 (433)
292 TIGR02658 TTQ_MADH_Hv methylam 97.6 0.011 2.4E-07 55.4 19.7 102 62-167 27-147 (352)
293 KOG1517 Guanine nucleotide bin 97.6 0.0015 3.2E-08 67.2 14.6 176 2-203 1184-1382(1387)
294 KOG1912 WD40 repeat protein [G 97.6 0.00056 1.2E-08 68.1 10.3 131 85-227 18-171 (1062)
295 KOG1240 Protein kinase contain 97.6 0.0058 1.3E-07 63.9 17.9 118 81-205 1147-1276(1431)
296 KOG4532 WD40-like repeat conta 97.5 0.0044 9.5E-08 54.9 14.2 112 103-223 135-262 (344)
297 KOG2041 WD40 repeat protein [G 97.5 0.00071 1.5E-08 66.9 10.0 140 77-227 9-172 (1189)
298 PRK02888 nitrous-oxide reducta 97.5 0.018 3.9E-07 57.3 19.6 69 126-202 323-404 (635)
299 PF14583 Pectate_lyase22: Olig 97.4 0.027 6E-07 53.0 18.9 150 32-186 191-370 (386)
300 PF10647 Gmad1: Lipoprotein Lp 97.3 0.03 6.5E-07 50.2 18.0 143 30-186 25-185 (253)
301 COG3391 Uncharacterized conser 97.3 0.12 2.5E-06 49.3 22.6 203 5-229 11-224 (381)
302 KOG2066 Vacuolar assembly/sort 97.3 0.0047 1E-07 62.0 13.0 98 91-203 80-188 (846)
303 COG3490 Uncharacterized protei 97.3 0.0064 1.4E-07 54.4 12.5 105 81-186 66-181 (366)
304 KOG3617 WD40 and TPR repeat-co 97.2 0.00087 1.9E-08 67.4 7.6 111 86-205 19-136 (1416)
305 COG3391 Uncharacterized conser 97.2 0.15 3.3E-06 48.5 22.7 201 6-227 97-314 (381)
306 PF02897 Peptidase_S9_N: Proly 97.1 0.27 5.8E-06 47.1 24.4 198 5-211 150-367 (414)
307 KOG1409 Uncharacterized conser 97.1 0.0052 1.1E-07 56.1 10.6 73 80-157 195-271 (404)
308 PF02897 Peptidase_S9_N: Proly 97.1 0.029 6.3E-07 53.8 16.6 117 33-158 128-262 (414)
309 KOG4640 Anaphase-promoting com 97.1 0.0026 5.5E-08 62.2 9.1 89 83-176 21-115 (665)
310 PF06977 SdiA-regulated: SdiA- 97.0 0.11 2.4E-06 46.3 18.2 177 29-224 22-234 (248)
311 KOG1240 Protein kinase contain 97.0 0.031 6.7E-07 58.8 16.2 115 77-202 1092-1225(1431)
312 PRK10115 protease 2; Provision 97.0 0.096 2.1E-06 53.8 19.9 115 32-155 130-254 (686)
313 KOG2695 WD40 repeat protein [G 96.9 0.0089 1.9E-07 54.7 10.2 124 28-167 252-387 (425)
314 KOG0309 Conserved WD40 repeat- 96.9 0.0047 1E-07 61.5 9.0 146 33-202 29-188 (1081)
315 KOG2066 Vacuolar assembly/sort 96.9 0.051 1.1E-06 54.8 16.2 136 37-202 80-233 (846)
316 KOG1064 RAVE (regulator of V-A 96.9 0.0033 7.2E-08 68.0 8.5 114 83-206 2252-2370(2439)
317 KOG4714 Nucleoporin [Nuclear s 96.9 0.0035 7.6E-08 55.3 7.1 71 83-157 180-255 (319)
318 KOG1334 WD40 repeat protein [G 96.8 0.0023 4.9E-08 60.8 5.8 141 2-159 301-469 (559)
319 KOG1912 WD40 repeat protein [G 96.7 0.041 8.9E-07 55.4 13.9 130 64-201 37-185 (1062)
320 KOG0644 Uncharacterized conser 96.7 0.001 2.2E-08 66.9 2.8 93 122-223 189-286 (1113)
321 KOG1832 HIV-1 Vpr-binding prot 96.7 0.00087 1.9E-08 67.8 2.0 189 4-229 1122-1319(1516)
322 PF04053 Coatomer_WDAD: Coatom 96.6 0.12 2.6E-06 50.2 16.5 117 94-228 117-249 (443)
323 PF03178 CPSF_A: CPSF A subuni 96.6 0.41 8.8E-06 44.2 19.5 179 5-202 2-202 (321)
324 COG3490 Uncharacterized protei 96.6 0.53 1.1E-05 42.6 20.3 144 27-180 66-239 (366)
325 COG5170 CDC55 Serine/threonine 96.6 0.0078 1.7E-07 54.4 7.4 108 83-201 222-366 (460)
326 PF06977 SdiA-regulated: SdiA- 96.6 0.17 3.7E-06 45.1 16.0 135 83-227 22-186 (248)
327 KOG0882 Cyclophilin-related pe 96.5 0.16 3.4E-06 48.3 15.2 175 4-203 75-306 (558)
328 KOG4640 Anaphase-promoting com 96.5 0.016 3.4E-07 56.9 9.1 89 124-222 21-116 (665)
329 PF15390 DUF4613: Domain of un 96.4 0.12 2.6E-06 50.8 14.8 113 80-203 54-187 (671)
330 COG5170 CDC55 Serine/threonine 96.4 0.0051 1.1E-07 55.5 5.0 110 81-203 171-310 (460)
331 PF15492 Nbas_N: Neuroblastoma 96.4 0.03 6.5E-07 50.1 9.7 71 129-209 3-80 (282)
332 KOG1334 WD40 repeat protein [G 96.4 0.0041 8.8E-08 59.1 4.3 109 83-202 337-466 (559)
333 COG3204 Uncharacterized protei 96.4 0.079 1.7E-06 47.8 12.2 112 83-204 86-212 (316)
334 COG3386 Gluconolactonase [Carb 96.3 0.35 7.7E-06 44.6 16.6 146 34-202 30-193 (307)
335 KOG3617 WD40 and TPR repeat-co 96.3 0.022 4.8E-07 57.8 9.1 110 32-156 19-131 (1416)
336 KOG2114 Vacuolar assembly/sort 96.3 0.67 1.5E-05 47.5 19.3 182 7-206 45-247 (933)
337 smart00320 WD40 WD40 repeats. 96.2 0.016 3.4E-07 33.5 5.2 30 122-154 11-40 (40)
338 PF08553 VID27: VID27 cytoplas 96.2 0.11 2.4E-06 53.6 13.8 126 63-201 505-646 (794)
339 KOG0309 Conserved WD40 repeat- 96.2 0.021 4.6E-07 57.1 8.2 156 29-203 68-233 (1081)
340 COG3386 Gluconolactonase [Carb 96.1 0.2 4.3E-06 46.2 14.2 118 63-186 144-275 (307)
341 PF10647 Gmad1: Lipoprotein Lp 96.1 0.29 6.3E-06 43.8 14.9 138 84-227 25-181 (253)
342 PF04841 Vps16_N: Vps16, N-ter 96.1 1.4 3.1E-05 42.4 22.8 54 124-180 217-273 (410)
343 TIGR02604 Piru_Ver_Nterm putat 96.1 0.29 6.3E-06 46.3 15.6 151 30-185 15-202 (367)
344 KOG1645 RING-finger-containing 96.1 0.016 3.5E-07 54.0 6.5 73 122-202 192-266 (463)
345 KOG0882 Cyclophilin-related pe 96.1 0.089 1.9E-06 49.9 11.4 120 99-227 115-256 (558)
346 PF15390 DUF4613: Domain of un 96.0 0.081 1.7E-06 52.0 11.4 97 5-113 82-185 (671)
347 PF04841 Vps16_N: Vps16, N-ter 95.9 1.6 3.4E-05 42.1 19.9 79 33-117 33-112 (410)
348 PRK10115 protease 2; Provision 95.9 0.25 5.4E-06 50.8 15.1 114 84-200 128-253 (686)
349 smart00320 WD40 WD40 repeats. 95.8 0.036 7.9E-07 31.9 5.3 27 168-200 14-40 (40)
350 PF12234 Rav1p_C: RAVE protein 95.7 0.15 3.3E-06 51.3 11.9 101 88-201 35-155 (631)
351 KOG4714 Nucleoporin [Nuclear s 95.6 0.023 5.1E-07 50.2 5.5 76 124-207 180-259 (319)
352 KOG1645 RING-finger-containing 95.6 0.092 2E-06 49.1 9.4 76 80-158 191-268 (463)
353 PF13360 PQQ_2: PQQ-like domai 95.5 1.3 2.8E-05 38.4 16.5 140 4-166 2-150 (238)
354 PF12894 Apc4_WD40: Anaphase-p 95.4 0.044 9.6E-07 35.6 4.9 34 123-160 11-44 (47)
355 PF06433 Me-amine-dh_H: Methyl 95.4 0.63 1.4E-05 43.2 14.1 128 63-201 18-164 (342)
356 KOG1275 PAB-dependent poly(A) 95.4 0.28 6.1E-06 50.4 12.6 63 93-159 186-257 (1118)
357 KOG3621 WD40 repeat-containing 95.0 0.18 3.9E-06 50.3 9.9 99 83-186 34-144 (726)
358 KOG4190 Uncharacterized conser 95.0 0.15 3.3E-06 49.5 9.1 121 75-206 776-911 (1034)
359 PF12894 Apc4_WD40: Anaphase-p 94.9 0.07 1.5E-06 34.7 4.7 33 168-206 13-45 (47)
360 KOG4190 Uncharacterized conser 94.8 0.2 4.2E-06 48.8 9.4 182 3-208 755-955 (1034)
361 KOG2114 Vacuolar assembly/sort 94.6 3.3 7.2E-05 42.7 17.5 102 77-185 166-272 (933)
362 KOG4499 Ca2+-binding protein R 94.5 3.1 6.8E-05 36.7 15.4 93 81-177 156-264 (310)
363 COG1506 DAP2 Dipeptidyl aminop 94.4 1.9 4.1E-05 43.9 16.1 99 33-140 17-117 (620)
364 KOG2395 Protein involved in va 94.4 0.51 1.1E-05 45.9 11.0 127 62-201 356-499 (644)
365 TIGR03032 conserved hypothetic 94.4 0.78 1.7E-05 42.1 11.7 90 126-222 205-315 (335)
366 PF14870 PSII_BNR: Photosynthe 94.1 4.7 0.0001 37.1 17.5 134 75-222 137-286 (302)
367 PF10214 Rrn6: RNA polymerase 93.9 2.8 6E-05 43.8 16.4 133 77-222 74-257 (765)
368 PF06433 Me-amine-dh_H: Methyl 93.9 5.6 0.00012 37.1 17.8 117 86-208 187-327 (342)
369 KOG1275 PAB-dependent poly(A) 93.8 0.42 9.2E-06 49.2 9.6 92 106-202 157-254 (1118)
370 KOG3630 Nuclear pore complex, 93.7 0.56 1.2E-05 49.5 10.5 138 78-223 96-255 (1405)
371 TIGR02171 Fb_sc_TIGR02171 Fibr 93.6 0.53 1.2E-05 48.9 10.2 77 63-139 330-414 (912)
372 PF12234 Rav1p_C: RAVE protein 93.2 0.63 1.4E-05 46.9 9.9 87 63-156 52-156 (631)
373 PF13360 PQQ_2: PQQ-like domai 93.1 5.3 0.00011 34.5 20.6 100 93-206 121-235 (238)
374 KOG1832 HIV-1 Vpr-binding prot 93.1 0.12 2.5E-06 53.1 4.4 79 116-201 1092-1174(1516)
375 KOG3621 WD40 repeat-containing 93.0 0.52 1.1E-05 47.2 8.7 119 22-157 27-155 (726)
376 COG3204 Uncharacterized protei 93.0 7.1 0.00015 35.6 15.5 158 29-205 86-266 (316)
377 COG1506 DAP2 Dipeptidyl aminop 93.0 3.5 7.6E-05 41.9 15.1 149 25-186 56-235 (620)
378 TIGR02604 Piru_Ver_Nterm putat 92.9 3.1 6.8E-05 39.3 13.7 139 84-228 15-200 (367)
379 KOG1409 Uncharacterized conser 92.8 4.2 9.1E-05 37.7 13.6 40 159-204 188-229 (404)
380 PF07676 PD40: WD40-like Beta 92.7 0.32 7E-06 29.7 4.7 31 123-153 8-38 (39)
381 PF07676 PD40: WD40-like Beta 92.7 0.25 5.4E-06 30.2 4.1 27 168-199 10-38 (39)
382 COG5290 IkappaB kinase complex 92.7 0.72 1.6E-05 47.0 9.2 93 126-226 249-351 (1243)
383 PF07995 GSDH: Glucose / Sorbo 92.7 3.9 8.4E-05 38.1 13.9 142 85-229 4-198 (331)
384 KOG1008 Uncharacterized conser 92.6 0.035 7.5E-07 54.8 0.0 140 80-229 100-261 (783)
385 PF07569 Hira: TUP1-like enhan 92.3 0.98 2.1E-05 39.5 8.8 62 131-202 18-95 (219)
386 PF03088 Str_synth: Strictosid 92.1 2.4 5.3E-05 31.5 9.4 53 146-203 35-88 (89)
387 KOG2377 Uncharacterized conser 91.8 7.8 0.00017 37.5 14.4 100 80-186 64-173 (657)
388 KOG2079 Vacuolar assembly/sort 91.6 1.2 2.5E-05 47.0 9.4 81 102-185 105-194 (1206)
389 PLN00033 photosystem II stabil 91.3 14 0.00031 35.4 18.2 114 64-185 261-389 (398)
390 PRK13684 Ycf48-like protein; P 90.9 9.5 0.00021 35.6 14.4 104 75-185 165-278 (334)
391 PF10214 Rrn6: RNA polymerase 90.8 13 0.00028 39.0 16.6 90 82-177 145-257 (765)
392 KOG2247 WD40 repeat-containing 90.8 0.03 6.4E-07 53.7 -2.5 137 30-185 36-178 (615)
393 PF14761 HPS3_N: Hermansky-Pud 90.5 11 0.00024 32.8 14.3 57 95-153 29-92 (215)
394 PF00780 CNH: CNH domain; Int 90.4 12 0.00027 33.2 15.3 106 81-202 34-165 (275)
395 KOG2100 Dipeptidyl aminopeptid 90.4 19 0.00042 37.6 17.2 135 5-143 73-226 (755)
396 PF10168 Nup88: Nuclear pore c 89.8 3 6.6E-05 43.0 10.8 68 125-202 86-179 (717)
397 PF14655 RAB3GAP2_N: Rab3 GTPa 89.6 3.5 7.7E-05 39.7 10.4 81 82-166 307-408 (415)
398 PF07995 GSDH: Glucose / Sorbo 89.3 18 0.0004 33.6 14.9 100 31-143 4-133 (331)
399 TIGR02276 beta_rpt_yvtn 40-res 89.3 2.4 5.1E-05 25.9 6.2 40 133-174 1-41 (42)
400 PF05694 SBP56: 56kDa selenium 89.2 12 0.00025 36.2 13.3 123 5-142 222-392 (461)
401 TIGR02171 Fb_sc_TIGR02171 Fibr 89.0 2.9 6.4E-05 43.6 9.9 87 96-183 320-415 (912)
402 PF10313 DUF2415: Uncharacteri 88.9 1.5 3.2E-05 27.8 4.9 30 125-157 2-34 (43)
403 KOG2280 Vacuolar assembly/sort 88.7 20 0.00043 36.8 15.0 93 124-229 217-313 (829)
404 TIGR03606 non_repeat_PQQ dehyd 88.6 26 0.00055 34.3 18.8 102 30-143 31-165 (454)
405 KOG2247 WD40 repeat-containing 88.6 0.071 1.5E-06 51.2 -1.8 137 86-233 38-181 (615)
406 KOG4499 Ca2+-binding protein R 88.5 14 0.0003 32.7 12.2 131 82-220 108-262 (310)
407 TIGR03300 assembly_YfgL outer 87.9 9 0.0002 36.0 12.0 97 94-206 65-168 (377)
408 PF05694 SBP56: 56kDa selenium 87.7 24 0.00052 34.1 14.3 128 83-211 65-240 (461)
409 TIGR03300 assembly_YfgL outer 87.6 5 0.00011 37.7 10.1 67 94-167 279-349 (377)
410 KOG4649 PQQ (pyrrolo-quinoline 87.1 12 0.00027 33.6 11.2 60 134-202 62-123 (354)
411 PF10168 Nup88: Nuclear pore c 87.0 12 0.00026 38.8 12.8 70 83-158 85-181 (717)
412 PF12657 TFIIIC_delta: Transcr 86.6 4.9 0.00011 33.6 8.4 24 126-154 7-30 (173)
413 PF05935 Arylsulfotrans: Aryls 86.0 12 0.00026 36.7 12.0 76 104-185 126-208 (477)
414 PLN00033 photosystem II stabil 85.8 34 0.00074 32.8 15.8 93 123-227 280-386 (398)
415 KOG1230 Protein containing rep 85.8 34 0.00074 32.8 14.1 150 30-185 68-250 (521)
416 KOG1008 Uncharacterized conser 85.4 0.22 4.7E-06 49.4 -0.5 134 82-221 56-205 (783)
417 PF14655 RAB3GAP2_N: Rab3 GTPa 85.3 11 0.00024 36.3 11.0 47 125-174 309-355 (415)
418 KOG2377 Uncharacterized conser 85.0 16 0.00035 35.4 11.6 92 122-224 65-166 (657)
419 KOG1520 Predicted alkaloid syn 84.4 5.8 0.00013 37.3 8.4 139 32-185 118-283 (376)
420 KOG3630 Nuclear pore complex, 84.4 6.6 0.00014 41.9 9.4 99 81-185 154-262 (1405)
421 PF08553 VID27: VID27 cytoplas 84.0 24 0.00052 36.9 13.3 65 84-155 579-646 (794)
422 COG5167 VID27 Protein involved 83.5 13 0.00028 36.5 10.4 58 135-202 573-632 (776)
423 PF14783 BBS2_Mid: Ciliary BBS 83.2 19 0.00042 27.9 11.6 60 69-131 29-88 (111)
424 PF00780 CNH: CNH domain; Int 83.1 33 0.00071 30.4 18.6 138 6-171 115-270 (275)
425 PF03088 Str_synth: Strictosid 82.2 11 0.00024 28.0 7.6 40 104-143 35-76 (89)
426 PF05935 Arylsulfotrans: Aryls 81.8 55 0.0012 32.1 18.3 115 34-164 153-309 (477)
427 PF15525 DUF4652: Domain of un 81.0 34 0.00073 29.2 12.6 84 83-166 56-158 (200)
428 PF14269 Arylsulfotran_2: Aryl 80.6 47 0.001 30.5 16.4 68 125-201 145-219 (299)
429 KOG2079 Vacuolar assembly/sort 80.1 7.5 0.00016 41.2 8.0 60 81-142 129-194 (1206)
430 PF10313 DUF2415: Uncharacteri 80.1 7.1 0.00015 24.8 5.0 31 83-115 1-34 (43)
431 PF13449 Phytase-like: Esteras 80.1 50 0.0011 30.6 18.1 116 86-202 88-249 (326)
432 KOG2444 WD40 repeat protein [G 79.3 8.7 0.00019 33.7 7.0 63 102-167 76-143 (238)
433 COG4257 Vgb Streptogramin lyas 79.3 50 0.0011 30.1 15.1 111 64-185 85-207 (353)
434 PF03178 CPSF_A: CPSF A subuni 79.0 52 0.0011 30.1 18.9 67 83-156 130-202 (321)
435 PF15359 CDV3: Carnitine defic 78.6 2.1 4.4E-05 34.2 2.8 16 264-279 83-98 (129)
436 PF14870 PSII_BNR: Photosynthe 78.6 55 0.0012 30.1 15.3 133 32-185 148-294 (302)
437 KOG4460 Nuclear pore complex, 78.0 11 0.00023 37.2 7.8 69 125-202 105-198 (741)
438 PF13449 Phytase-like: Esteras 77.5 60 0.0013 30.0 14.8 98 127-229 88-232 (326)
439 PF12657 TFIIIC_delta: Transcr 77.5 18 0.00038 30.2 8.4 30 124-156 86-121 (173)
440 KOG4649 PQQ (pyrrolo-quinoline 76.7 35 0.00076 30.8 10.1 87 94-185 63-155 (354)
441 TIGR03606 non_repeat_PQQ dehyd 76.4 80 0.0017 30.9 16.2 101 84-186 31-165 (454)
442 PF05787 DUF839: Bacterial pro 76.1 45 0.00098 33.2 12.1 57 129-185 441-520 (524)
443 KOG2280 Vacuolar assembly/sort 76.0 19 0.0004 37.0 9.2 93 88-185 38-146 (829)
444 KOG1916 Nuclear protein, conta 74.9 5.6 0.00012 41.5 5.3 134 60-201 153-322 (1283)
445 KOG2444 WD40 repeat protein [G 74.3 7.4 0.00016 34.1 5.3 93 60-157 80-178 (238)
446 PF07250 Glyoxal_oxid_N: Glyox 72.6 35 0.00077 30.3 9.4 81 106-186 46-137 (243)
447 PF14783 BBS2_Mid: Ciliary BBS 72.4 43 0.00094 25.9 13.2 61 90-157 10-72 (111)
448 COG1770 PtrB Protease II [Amin 68.8 47 0.001 33.8 10.1 62 125-186 130-193 (682)
449 PF01731 Arylesterase: Arylest 67.9 28 0.00062 25.6 6.5 33 122-156 52-84 (86)
450 PF01731 Arylesterase: Arylest 65.9 28 0.00061 25.6 6.2 48 148-202 36-84 (86)
451 PF14727 PHTB1_N: PTHB1 N-term 65.9 1.3E+02 0.0029 29.1 15.8 105 76-186 65-194 (418)
452 PRK11138 outer membrane biogen 65.8 80 0.0017 29.9 11.0 28 135-165 335-362 (394)
453 COG5290 IkappaB kinase complex 65.7 35 0.00075 35.5 8.5 95 82-180 246-350 (1243)
454 PF10395 Utp8: Utp8 family; I 65.7 1.7E+02 0.0036 30.1 16.6 151 28-202 129-305 (670)
455 KOG1897 Damage-specific DNA bi 64.8 2E+02 0.0044 30.8 17.4 106 84-202 776-898 (1096)
456 PF07569 Hira: TUP1-like enhan 64.5 44 0.00096 29.1 8.3 24 90-115 18-41 (219)
457 PF07250 Glyoxal_oxid_N: Glyox 64.5 1E+02 0.0023 27.4 11.5 121 75-206 59-201 (243)
458 KOG1520 Predicted alkaloid syn 64.3 80 0.0017 29.9 10.2 117 83-206 115-253 (376)
459 PF08596 Lgl_C: Lethal giant l 64.0 1.4E+02 0.003 28.6 13.0 70 122-201 85-172 (395)
460 TIGR03118 PEPCTERM_chp_1 conse 61.2 58 0.0013 30.1 8.4 59 106-166 222-289 (336)
461 PRK13615 lipoprotein LpqB; Pro 60.9 1.9E+02 0.0041 29.2 16.1 154 32-204 337-504 (557)
462 PF14761 HPS3_N: Hermansky-Pud 59.4 38 0.00083 29.5 6.7 40 147-186 37-79 (215)
463 PF12768 Rax2: Cortical protei 58.2 1.3E+02 0.0027 27.5 10.2 111 107-222 17-147 (281)
464 PRK13684 Ycf48-like protein; P 57.2 1.6E+02 0.0036 27.3 16.4 102 76-185 208-321 (334)
465 KOG2395 Protein involved in va 55.1 1.2E+02 0.0027 30.1 9.9 127 97-229 347-489 (644)
466 KOG4460 Nuclear pore complex, 53.1 1.2E+02 0.0025 30.3 9.4 29 84-114 167-198 (741)
467 PF14781 BBS2_N: Ciliary BBSom 50.0 1.3E+02 0.0029 24.1 10.8 63 135-207 63-130 (136)
468 PF11715 Nup160: Nucleoporin N 49.9 38 0.00082 33.7 6.1 36 126-164 217-256 (547)
469 PRK13614 lipoprotein LpqB; Pro 49.4 3E+02 0.0064 27.9 13.4 74 84-158 435-520 (573)
470 KOG4305 RhoGEF GTPase [Signal 48.6 2.4E+02 0.0052 30.6 11.6 90 83-185 914-1012(1029)
471 PF12768 Rax2: Cortical protei 47.7 2.2E+02 0.0048 25.9 12.7 98 64-163 18-130 (281)
472 PRK13615 lipoprotein LpqB; Pro 46.8 3.1E+02 0.0068 27.7 11.7 131 86-225 337-483 (557)
473 KOG1230 Protein containing rep 46.7 2.8E+02 0.0061 26.9 14.3 126 58-186 150-316 (521)
474 PHA03098 kelch-like protein; P 45.5 3.1E+02 0.0068 27.0 13.5 52 107-158 407-466 (534)
475 PF08596 Lgl_C: Lethal giant l 43.9 3E+02 0.0065 26.4 10.9 90 105-204 234-337 (395)
476 PF05096 Glu_cyclase_2: Glutam 43.1 2.5E+02 0.0055 25.3 12.5 157 59-230 65-249 (264)
477 KOG1897 Damage-specific DNA bi 41.8 4.8E+02 0.01 28.2 18.4 167 5-183 750-930 (1096)
478 PF10584 Proteasome_A_N: Prote 41.0 6.6 0.00014 21.3 -0.5 8 173-180 7-14 (23)
479 PRK11138 outer membrane biogen 40.6 3.2E+02 0.0069 25.7 17.3 26 135-163 256-281 (394)
480 PHA03098 kelch-like protein; P 40.6 2.7E+02 0.0058 27.5 10.4 96 107-202 312-414 (534)
481 PF05096 Glu_cyclase_2: Glutam 40.1 2.8E+02 0.0061 25.0 13.5 107 83-201 45-156 (264)
482 COG5167 VID27 Protein involved 37.4 2.7E+02 0.0058 27.9 9.1 87 64-156 539-632 (776)
483 KOG2100 Dipeptidyl aminopeptid 36.2 1.6E+02 0.0035 30.8 8.3 57 129-185 102-166 (755)
484 COG4247 Phy 3-phytase (myo-ino 35.7 3.4E+02 0.0073 24.6 17.4 184 5-209 77-295 (364)
485 PRK13613 lipoprotein LpqB; Pro 34.8 5.1E+02 0.011 26.4 16.2 120 82-205 408-542 (599)
486 smart00564 PQQ beta-propeller 33.8 90 0.002 17.4 4.0 23 137-162 8-30 (33)
487 COG4590 ABC-type uncharacteriz 33.0 4.9E+02 0.011 25.7 11.9 50 147-203 337-387 (733)
488 COG2133 Glucose/sorbosone dehy 30.1 1.4E+02 0.0031 28.6 6.1 68 33-102 181-259 (399)
489 PF10411 DsbC_N: Disulfide bon 29.9 76 0.0016 21.2 3.2 15 128-142 35-49 (57)
490 PF07646 Kelch_2: Kelch motif; 29.2 1.1E+02 0.0024 19.2 3.8 28 131-158 8-40 (49)
491 COG4247 Phy 3-phytase (myo-ino 29.1 73 0.0016 28.7 3.7 42 172-219 61-102 (364)
492 PF11715 Nup160: Nucleoporin N 28.7 1.8E+02 0.004 28.8 7.1 30 170-205 218-251 (547)
493 PF13418 Kelch_4: Galactose ox 28.5 73 0.0016 19.9 2.8 28 132-159 10-40 (49)
494 smart00036 CNH Domain found in 28.4 3E+02 0.0066 25.1 7.9 68 32-113 1-72 (302)
495 TIGR02608 delta_60_rpt delta-6 28.1 1.9E+02 0.0041 19.3 5.5 19 126-144 3-21 (55)
496 PF12566 DUF3748: Protein of u 27.5 3E+02 0.0065 21.5 7.1 16 170-185 71-86 (122)
497 PF01436 NHL: NHL repeat; Int 27.3 1.2E+02 0.0026 16.8 3.4 25 85-111 4-28 (28)
498 COG1770 PtrB Protease II [Amin 26.3 7.4E+02 0.016 25.6 18.8 126 22-158 124-258 (682)
499 PF01011 PQQ: PQQ enzyme repea 26.3 1.4E+02 0.0031 17.7 3.7 21 146-166 8-28 (38)
500 PRK13613 lipoprotein LpqB; Pro 25.5 7.3E+02 0.016 25.3 16.1 73 84-156 456-539 (599)
No 1
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-61 Score=450.22 Aligned_cols=227 Identities=55% Similarity=0.962 Sum_probs=218.7
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK 81 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~ 81 (321)
|+|++||||.+|.....+++++++||++|.++|.||+.|+.||+++++|+|++|++|||++.||++..+|. ++.|++.+
T Consensus 191 GaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~-s~~V~L~k 269 (566)
T KOG2315|consen 191 GAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE-SVSVPLLK 269 (566)
T ss_pred CCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc-eEEEecCC
Confidence 89999999999965458899999999999999999999999999999999999999999999999999965 89999999
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEE
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL 161 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i 161 (321)
+|||||+.|+|+|++|++|||+||.+++|||++|++++.|+.+++|++.|||+|++|+++||||+.|.|.|||+.+.++|
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i 349 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI 349 (566)
T ss_pred CCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEeccC-ceEEEEEecCCCCCCCC
Q 020756 162 GTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFD-KLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 162 ~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~~-~~~~~~w~P~~~~~~~~ 229 (321)
..+...+.+.++|||||+||+|++++||||+||+++||||+|.+++..++. +++++.|+|....++..
T Consensus 350 ~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~~~~f~sEL~qv~W~P~~~~~~~~ 418 (566)
T KOG2315|consen 350 AKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLHEKMFKSELLQVEWRPFNDKTGNE 418 (566)
T ss_pred cccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceeehhhhhHhHhheeeeecCCcccch
Confidence 999999999999999999999999999999999999999999999999888 79999999988876664
No 2
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=100.00 E-value=2e-42 Score=298.04 Aligned_cols=194 Identities=47% Similarity=0.911 Sum_probs=185.1
Q ss_pred eecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc
Q 020756 24 RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF 103 (321)
Q Consensus 24 ~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~ 103 (321)
|+||+++.++|.|+++|++|++.+.+++|+++++|||+..||+++..+.....+.+..+++|++++|+|+|++||+++|.
T Consensus 1 k~~f~~~~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~ 80 (194)
T PF08662_consen 1 KNFFNVDDAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGS 80 (194)
T ss_pred CCccccceEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEcc
Confidence 58999999999999999999999999999999999999999999988877888888888899999999999999999999
Q ss_pred CCCeEEEEeCCCceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCCCeeeEEEccCCCEEEE
Q 020756 104 MPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMT 183 (321)
Q Consensus 104 ~~~~i~i~d~~~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~t 183 (321)
++..+.|||++++.+.+++...+|++.|||+|++|+++|++|..|.|.|||+++.+++.+.++..++.++|||||+||++
T Consensus 81 ~~~~v~lyd~~~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 81 MPAKVTLYDVKGKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLAT 160 (194)
T ss_pred CCcccEEEcCcccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999998889999999999999999
Q ss_pred EEcCCceeecCcEEEEeecCceeEEeccCceEEE
Q 020756 184 ATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQA 217 (321)
Q Consensus 184 ~~s~~rl~~d~~v~iw~~~g~~l~~~~~~~~~~~ 217 (321)
+++.||+++||+++||+++|+++++...+++++|
T Consensus 161 a~t~~r~~~dng~~Iw~~~G~~l~~~~~~~l~~~ 194 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQGRLLYKKPFDELYQV 194 (194)
T ss_pred EEeccceeccccEEEEEecCeEeEecchhhhhCC
Confidence 9999999999999999999999999888888764
No 3
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=100.00 E-value=1.3e-40 Score=307.06 Aligned_cols=247 Identities=30% Similarity=0.510 Sum_probs=216.6
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK 81 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~ 81 (321)
|+|++|+||.||. +..+.+++||+++.|+++|++.|++||+++.++. +++++|||+.+||++.+.+. ...+.++.
T Consensus 199 ~kpa~~~i~sIp~---~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~-ksnKsyfgesnLyl~~~~e~-~i~V~~~~ 273 (561)
T COG5354 199 NKPAMVRILSIPK---NSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHT-KSNKSYFGESNLYLLRITER-SIPVEKDL 273 (561)
T ss_pred CCCcEEEEEEccC---CCeeeeeeeEeecccEEEEecCCceEEEEEEEee-ecccceeccceEEEEeeccc-ccceeccc
Confidence 7999999999997 8999999999999999999999999999999988 99999999999999998754 66777677
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC-eE
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQ 160 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~-~~ 160 (321)
+++|+++.|+|+++.|++|+|.||..+.+||++++.++.+..+..|++.|||.+++++++||+|+.|+|.+||.... .+
T Consensus 274 ~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~ 353 (561)
T COG5354 274 KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKV 353 (561)
T ss_pred cccceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEE
Confidence 89999999999999999999999999999999999889999999999999999999999999999999999998765 56
Q ss_pred EEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEeccCceEEEEEecCCCCCCCCcchhhhccccc
Q 020756 161 LGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDISELIKSVGSL 240 (321)
Q Consensus 161 i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~~~~~~~~w~P~~~~~~~~~~~~~~~~~~~ 240 (321)
+..+.+.+...+.|||||+|+.++++.+|+|+|+.++|||+.|..++ +++++.|+|..++..+..
T Consensus 354 ~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f-----el~~~~W~p~~~~~ttsS---------- 418 (561)
T COG5354 354 AGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF-----ELTNITWDPSGQYVTTSS---------- 418 (561)
T ss_pred EEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh-----hhhhccccCCcccceeec----------
Confidence 66888888899999999999999999999999999999999998887 789999999765554431
Q ss_pred ccccccccCCCCccccCCCCCCCCCCCCccCCCCCCCh
Q 020756 241 KVAETKSQGSGSASRKAAPSNPTATKPAAYRPPHAKQA 278 (321)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~pp~~r~~ 278 (321)
..+.++..- .-.....+++|+||++|+.
T Consensus 419 s~~~h~~~~----------~~~~~k~~Ga~~~e~~rg~ 446 (561)
T COG5354 419 SCPKHKVEH----------GYKIFKIAGALYPEEARGG 446 (561)
T ss_pred cCCCCcccc----------ccccccccccccChhhhcc
Confidence 011111110 0113567789999999975
No 4
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=5.4e-28 Score=225.39 Aligned_cols=227 Identities=26% Similarity=0.494 Sum_probs=191.7
Q ss_pred CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC--
Q 020756 3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-- 80 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~-- 80 (321)
.|++|.|..+|+ .+.|.++++|+...|.|.|..+|+||++-+ |+..++-. ....+.+++....++.+++.
T Consensus 371 ~parvtL~evPs---~~~iRt~nlfnVsDckLhWQk~gdyLcvkv----dR~tK~~~-~g~f~n~eIfrireKdIpve~v 442 (698)
T KOG2314|consen 371 IPARVTLMEVPS---KREIRTKNLFNVSDCKLHWQKSGDYLCVKV----DRHTKSKV-KGQFSNLEIFRIREKDIPVEVV 442 (698)
T ss_pred CcceEEEEecCc---cceeeeccceeeeccEEEeccCCcEEEEEE----Eeeccccc-cceEeeEEEEEeeccCCCceee
Confidence 699999999999 899999999999999999999999999974 33333311 22356677766667766655
Q ss_pred -CCCCeEEEEECcCCCEEEEEEccCCC-eEEEEeCCC-----ceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEE
Q 020756 81 -KEGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKKC-----RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW 153 (321)
Q Consensus 81 -~~~~v~~~~wsP~g~~l~~~~g~~~~-~i~i~d~~~-----~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw 153 (321)
..+.|..++|.|.|+.|++++|.... ++.+|.+.. ..+..|....+|++.|||.|+++++++.++..|+++|+
T Consensus 443 elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~ 522 (698)
T KOG2314|consen 443 ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFY 522 (698)
T ss_pred ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEE
Confidence 57899999999999999999887654 788887753 35566778899999999999999999877778999999
Q ss_pred ECC--CCeEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEeccCceEEEEEecCCCCCCCCc-
Q 020756 154 DYV--DGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDI- 230 (321)
Q Consensus 154 D~~--~~~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~~~~~~~~w~P~~~~~~~~~- 230 (321)
|+. +.+.+...++...+.+.|.|.|||++|+++.+|..+|++++||++.|+++.+...+++.++.|||.+|.+++..
T Consensus 523 D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqGrll~~~~i~~f~qF~WRPRPps~LS~e~ 602 (698)
T KOG2314|consen 523 DTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQGRLLKEDIIDRFKQFLWRPRPPSLLSEEK 602 (698)
T ss_pred ecchhhhhhccCccccccccceECCCCCEEEEeeehhhhccccceEEEEeecHHHHHHHHHHHHhhccCCCCCcccCHHH
Confidence 997 45666767767888999999999999999999999999999999999999999999999999999999999984
Q ss_pred -chhhhcc
Q 020756 231 -SELIKSV 237 (321)
Q Consensus 231 -~~~~~~~ 237 (321)
+.+.+++
T Consensus 603 ~KkIkKnL 610 (698)
T KOG2314|consen 603 QKKIKKNL 610 (698)
T ss_pred HHHHHHHH
Confidence 4555554
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=2.5e-23 Score=188.90 Aligned_cols=202 Identities=19% Similarity=0.235 Sum_probs=170.2
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK 81 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~ 81 (321)
+.++.|+||++.+ ..++....-+-+.+..+.|+|+|++|...+ .|.+-. || ++....+-..+-.|
T Consensus 238 s~Dgtvklw~~~~---e~~l~~l~gH~~RVs~VafHPsG~~L~Tas---fD~tWR-------lW--D~~tk~ElL~QEGH 302 (459)
T KOG0272|consen 238 SADGTVKLWKLSQ---ETPLQDLEGHLARVSRVAFHPSGKFLGTAS---FDSTWR-------LW--DLETKSELLLQEGH 302 (459)
T ss_pred ccCCceeeeccCC---CcchhhhhcchhhheeeeecCCCceeeecc---cccchh-------hc--ccccchhhHhhccc
Confidence 4689999999999 788999998889999999999999998753 344333 33 33344345555578
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 158 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~ 158 (321)
...|++++|.|||..+++ |.+|...+|||++ +..+..| |..+|.++.|||+|-.|++++ .|++++|||++..
T Consensus 303 s~~v~~iaf~~DGSL~~t--GGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs---~Dnt~kVWDLR~r 377 (459)
T KOG0272|consen 303 SKGVFSIAFQPDGSLAAT--GGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGS---SDNTCKVWDLRMR 377 (459)
T ss_pred ccccceeEecCCCceeec--cCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecC---CCCcEEEeeeccc
Confidence 999999999999998877 7899999999995 4566555 889999999999999999999 8999999999988
Q ss_pred eEEEeeeCC--CeeeEEEcc-CCCEEEEEEcCCceeecCcEEEEeecCc-ee--EEeccCceEEEEEecCCCCCCCC
Q 020756 159 KQLGTTRAE--CSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIFHHNGS-LF--FKKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 159 ~~i~~~~~~--~~~~~~wSp-dG~~l~t~~s~~rl~~d~~v~iw~~~g~-~l--~~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
+.+.++.+| -|+.+.|+| .|.+|+|++ +|++++||.-.+- ++ ..+|.+.|.++..+|++..+.+.
T Consensus 378 ~~ly~ipAH~nlVS~Vk~~p~~g~fL~Tas------yD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~ 448 (459)
T KOG0272|consen 378 SELYTIPAHSNLVSQVKYSPQEGYFLVTAS------YDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATS 448 (459)
T ss_pred ccceecccccchhhheEecccCCeEEEEcc------cCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEe
Confidence 889999988 678899999 699999998 6999999998554 44 66899999999999999888875
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.88 E-value=3.3e-22 Score=181.63 Aligned_cols=199 Identities=16% Similarity=0.166 Sum_probs=157.1
Q ss_pred CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCC-CeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756 4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGS-TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE 82 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G-~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~ 82 (321)
.|.++||+.|+ .+.+....-+......+.|+|.- ..-++.++.| |...||-+ ++...-.--..|.
T Consensus 196 sG~~kvW~~~~---~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~D---------gtvklw~~--~~e~~l~~l~gH~ 261 (459)
T KOG0272|consen 196 SGLVKVWSVPQ---CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASAD---------GTVKLWKL--SQETPLQDLEGHL 261 (459)
T ss_pred CCceeEeecCC---cceeEEEeccccceeeEEEccCCCccceeeeccC---------Cceeeecc--CCCcchhhhhcch
Confidence 57899999999 67788888888899999999983 3333333222 44444433 3321111112478
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCce---eEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP---ILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 159 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~---~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~ 159 (321)
..|..++|+|+|++|++. +-|.+..|||+..+. .+.-|...+.+++|+|||.+++++| +|..-.|||+++++
T Consensus 262 ~RVs~VafHPsG~~L~Ta--sfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGG---lD~~~RvWDlRtgr 336 (459)
T KOG0272|consen 262 ARVSRVAFHPSGKFLGTA--SFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGG---LDSLGRVWDLRTGR 336 (459)
T ss_pred hhheeeeecCCCceeeec--ccccchhhcccccchhhHhhcccccccceeEecCCCceeeccC---ccchhheeecccCc
Confidence 899999999999999994 678899999997652 2344889999999999999999999 88899999999999
Q ss_pred EEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee-EE--eccCceEEEEEecCCCCCC
Q 020756 160 QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF-FK--KMFDKLFQAEWKPVSPDKF 227 (321)
Q Consensus 160 ~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l-~~--~~~~~~~~~~w~P~~~~~~ 227 (321)
++-.+.+| .|..++|||+|-+|||+++ ||+++|||+.++.. +. .|...|.+|.|.|+....+
T Consensus 337 ~im~L~gH~k~I~~V~fsPNGy~lATgs~------Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL 403 (459)
T KOG0272|consen 337 CIMFLAGHIKEILSVAFSPNGYHLATGSS------DNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFL 403 (459)
T ss_pred EEEEecccccceeeEeECCCceEEeecCC------CCcEEEeeecccccceecccccchhhheEecccCCeEE
Confidence 99999998 8999999999999999995 99999999977643 33 4778999999999554443
No 7
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.85 E-value=9.4e-20 Score=158.23 Aligned_cols=203 Identities=18% Similarity=0.227 Sum_probs=159.8
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC-
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR- 80 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~- 80 (321)
+-++.+|||++.. ++...+...+..++..+.+|+|.+.|+.-. +|++ |.+++..|.....+.-+
T Consensus 82 swD~~lrlWDl~~---g~~t~~f~GH~~dVlsva~s~dn~qivSGS---rDkT---------iklwnt~g~ck~t~~~~~ 146 (315)
T KOG0279|consen 82 SWDGTLRLWDLAT---GESTRRFVGHTKDVLSVAFSTDNRQIVSGS---RDKT---------IKLWNTLGVCKYTIHEDS 146 (315)
T ss_pred cccceEEEEEecC---CcEEEEEEecCCceEEEEecCCCceeecCC---Ccce---------eeeeeecccEEEEEecCC
Confidence 3468899999999 788888888899999999999999886531 3332 45555556422222222
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCcee-EEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756 81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 157 (321)
Q Consensus 81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~-~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~ 157 (321)
+.+-|.++.|+|+.....++.+..|+++++||+++-.+ ..+ |.+.++.+.+||||.+++++| .+|.+.+||++.
T Consensus 147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGg---kdg~~~LwdL~~ 223 (315)
T KOG0279|consen 147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGG---KDGEAMLWDLNE 223 (315)
T ss_pred CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCC---CCceEEEEEccC
Confidence 26789999999997666666678899999999976544 444 788999999999999999998 999999999999
Q ss_pred CeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee-EE------ec-----cCceEEEEEecCCC
Q 020756 158 GKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF-FK------KM-----FDKLFQAEWKPVSP 224 (321)
Q Consensus 158 ~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l-~~------~~-----~~~~~~~~w~P~~~ 224 (321)
++.+.++++. .+..++|+|+--+|+.++ +..|+|||+..+.+ .. .. ...+..++|++++.
T Consensus 224 ~k~lysl~a~~~v~sl~fspnrywL~~at-------~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~ 296 (315)
T KOG0279|consen 224 GKNLYSLEAFDIVNSLCFSPNRYWLCAAT-------ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQ 296 (315)
T ss_pred CceeEeccCCCeEeeEEecCCceeEeecc-------CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCc
Confidence 9999999887 678899999987777777 88899999965432 11 11 23577899999999
Q ss_pred CCCCC
Q 020756 225 DKFGD 229 (321)
Q Consensus 225 ~~~~~ 229 (321)
.+|..
T Consensus 297 tLf~g 301 (315)
T KOG0279|consen 297 TLFAG 301 (315)
T ss_pred EEEee
Confidence 99976
No 8
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=9.4e-20 Score=164.06 Aligned_cols=202 Identities=19% Similarity=0.314 Sum_probs=154.8
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK 81 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~ 81 (321)
+.++.|+||++-. ++++...+-+...+.-+.|-- +.+++..+. |++ +-.+....+.-.+..-.|
T Consensus 224 skDg~vrIWd~~~---~~~~~~lsgHT~~VTCvrwGG--~gliySgS~--Drt---------Ikvw~a~dG~~~r~lkGH 287 (480)
T KOG0271|consen 224 SKDGSVRIWDTKL---GTCVRTLSGHTASVTCVRWGG--EGLIYSGSQ--DRT---------IKVWRALDGKLCRELKGH 287 (480)
T ss_pred cCCCCEEEEEccC---ceEEEEeccCccceEEEEEcC--CceEEecCC--Cce---------EEEEEccchhHHHhhccc
Confidence 4689999999998 899999999999999999964 456665332 222 222232222122222234
Q ss_pred CCCeEEEEEC-----------cCCCE-------------------------EEEEEccCCCeEEEEeC--CCceeEEe--
Q 020756 82 EGPVHDVQWS-----------YSGSE-------------------------FAVVYGFMPASATIFNK--KCRPILEL-- 121 (321)
Q Consensus 82 ~~~v~~~~ws-----------P~g~~-------------------------l~~~~g~~~~~i~i~d~--~~~~~~~~-- 121 (321)
..-|+.++.| |.|++ ++. |+.|.++.+|+- ..+++...
T Consensus 288 ahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVS--gsDd~tlflW~p~~~kkpi~rmtg 365 (480)
T KOG0271|consen 288 AHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVS--GSDDFTLFLWNPFKSKKPITRMTG 365 (480)
T ss_pred chheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEE--ecCCceEEEecccccccchhhhhc
Confidence 4455555444 44444 554 677889999986 23455554
Q ss_pred CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEE
Q 020756 122 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 199 (321)
Q Consensus 122 ~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw 199 (321)
|..-||.+.|||||++|++++ .|..|++||.++|+.+.+|.+| .+++++||.|.|+|++++ .|.++++|
T Consensus 366 Hq~lVn~V~fSPd~r~IASaS---FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~S------kDsTLKvw 436 (480)
T KOG0271|consen 366 HQALVNHVSFSPDGRYIASAS---FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGS------KDSTLKVW 436 (480)
T ss_pred hhhheeeEEECCCccEEEEee---cccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcC------CCceEEEE
Confidence 788999999999999999999 7889999999999999999988 789999999999999999 49999999
Q ss_pred eecCcee---EEeccCceEEEEEecCCCCCCCCc
Q 020756 200 HHNGSLF---FKKMFDKLFQAEWKPVSPDKFGDI 230 (321)
Q Consensus 200 ~~~g~~l---~~~~~~~~~~~~w~P~~~~~~~~~ 230 (321)
++..+.+ +.+|.++|+.+.|+|++..+.+..
T Consensus 437 ~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sgg 470 (480)
T KOG0271|consen 437 DVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGG 470 (480)
T ss_pred EeeeeeecccCCCCCceEEEEEecCCCceeecCC
Confidence 9987776 456889999999999998888764
No 9
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.83 E-value=1.2e-18 Score=149.39 Aligned_cols=201 Identities=15% Similarity=0.205 Sum_probs=161.9
Q ss_pred ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756 5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP 84 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~ 84 (321)
..||||++.+.+ ..|+.+.-.....+..+.|..+|+.++... -.|...||.+.. ..++-.+.+..+
T Consensus 61 qhvRlyD~~S~n-p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgs----------eDgt~kIWdlR~---~~~qR~~~~~sp 126 (311)
T KOG0315|consen 61 QHVRLYDLNSNN-PNPVATFEGHTKNVTAVGFQCDGRWMYTGS----------EDGTVKIWDLRS---LSCQRNYQHNSP 126 (311)
T ss_pred CeeEEEEccCCC-CCceeEEeccCCceEEEEEeecCeEEEecC----------CCceEEEEeccC---cccchhccCCCC
Confidence 479999999854 347888877777889999999999987641 114444454433 345555678899
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC--
Q 020756 85 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-- 158 (321)
Q Consensus 85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~-- 158 (321)
|+++..+|+..+|++ ++..+.|.+||+..+ ....+ ....+.++...|||++|+.+. ..|+.++|++-+.
T Consensus 127 Vn~vvlhpnQteLis--~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~n---nkG~cyvW~l~~~~~ 201 (311)
T KOG0315|consen 127 VNTVVLHPNQTELIS--GDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAAN---NKGNCYVWRLLNHQT 201 (311)
T ss_pred cceEEecCCcceEEe--ecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEec---CCccEEEEEccCCCc
Confidence 999999999999998 578899999999766 33333 457889999999999999987 8899999998754
Q ss_pred ----eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc----eeEEeccCceEEEEEecCCCCCCC
Q 020756 159 ----KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS----LFFKKMFDKLFQAEWKPVSPDKFG 228 (321)
Q Consensus 159 ----~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~----~l~~~~~~~~~~~~w~P~~~~~~~ 228 (321)
+.+..+.+| .+..+.+|||++||+++++ |.+++||+.++- +..+++...+|+..|+-++.+|++
T Consensus 202 ~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss------dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvT 275 (311)
T KOG0315|consen 202 ASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS------DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVT 275 (311)
T ss_pred cccceEhhheecccceEEEEEECCCCcEEEeecC------CceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEe
Confidence 456667776 6888999999999999996 999999998654 446778889999999999999998
Q ss_pred Cc
Q 020756 229 DI 230 (321)
Q Consensus 229 ~~ 230 (321)
..
T Consensus 276 as 277 (311)
T KOG0315|consen 276 AS 277 (311)
T ss_pred cC
Confidence 75
No 10
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.82 E-value=2.5e-19 Score=173.64 Aligned_cols=174 Identities=15% Similarity=0.244 Sum_probs=144.2
Q ss_pred CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756 3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE 82 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~ 82 (321)
++++||||.+.+ ...+..-+-+...+..+.|+|.|=|++... .|++- .|| ..+.....++...|-
T Consensus 471 ED~svRLWsl~t---~s~~V~y~GH~~PVwdV~F~P~GyYFatas---~D~tA-------rLW--s~d~~~PlRifaghl 535 (707)
T KOG0263|consen 471 EDSSVRLWSLDT---WSCLVIYKGHLAPVWDVQFAPRGYYFATAS---HDQTA-------RLW--STDHNKPLRIFAGHL 535 (707)
T ss_pred CCcceeeeeccc---ceeEEEecCCCcceeeEEecCCceEEEecC---CCcee-------eee--ecccCCchhhhcccc
Confidence 578999999999 444444445667788899999999887752 22222 233 344455667777899
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeC-CCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 159 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~ 159 (321)
..|.++.|+|++.++++ |..|.++++||+ .+..++-| |.+++.+++|||+|++|++++ .+|.|.+||+.+++
T Consensus 536 sDV~cv~FHPNs~Y~aT--GSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~---ed~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 536 SDVDCVSFHPNSNYVAT--GSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGD---EDGLIKIWDLANGS 610 (707)
T ss_pred cccceEEECCccccccc--CCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecc---cCCcEEEEEcCCCc
Confidence 99999999999999998 788999999998 55666666 899999999999999999999 99999999999999
Q ss_pred EEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756 160 QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 160 ~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
.+..+..| .+.++.||.||..||+++ .|+.|++||+.
T Consensus 611 ~v~~l~~Ht~ti~SlsFS~dg~vLasgg------~DnsV~lWD~~ 649 (707)
T KOG0263|consen 611 LVKQLKGHTGTIYSLSFSRDGNVLASGG------ADNSVRLWDLT 649 (707)
T ss_pred chhhhhcccCceeEEEEecCCCEEEecC------CCCeEEEEEch
Confidence 99888877 688899999999999999 59999999984
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.81 E-value=3.6e-18 Score=148.44 Aligned_cols=210 Identities=14% Similarity=0.120 Sum_probs=163.7
Q ss_pred ceEEEEEcCCcCC--CCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756 5 ASVQIYACGKDLQ--SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE 82 (321)
Q Consensus 5 ~~v~v~~~~~~~~--~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~ 82 (321)
-.+-+|++..... +.++....-+.--+.++.-++||++.+.. ++.+. +.++++.++...+....|.
T Consensus 38 k~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~----------swD~~--lrlWDl~~g~~t~~f~GH~ 105 (315)
T KOG0279|consen 38 KTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSA----------SWDGT--LRLWDLATGESTRRFVGHT 105 (315)
T ss_pred eEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEec----------cccce--EEEEEecCCcEEEEEEecC
Confidence 3567788876321 22333333344456677889999988763 22233 5556666655566666899
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEeC----CcCeeeEEEcCC--CCeEEEEccCCCCCcEEEEECC
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELG----SGPYNTVRWNPK--GKFLCLAGFGNLPGDMAFWDYV 156 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~----~~~~~~~~~sPd--G~~l~~~g~~n~~g~i~iwD~~ 156 (321)
..|.++++|||.++++. |+.|.+|.+|+..+....+++ ..-|++++|+|. .-+|+.++ .|++|++||++
T Consensus 106 ~dVlsva~s~dn~qivS--GSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s---~DktvKvWnl~ 180 (315)
T KOG0279|consen 106 KDVLSVAFSTDNRQIVS--GSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSAS---WDKTVKVWNLR 180 (315)
T ss_pred CceEEEEecCCCceeec--CCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEcc---CCceEEEEccC
Confidence 99999999999999988 799999999999998888772 567999999998 56888888 99999999999
Q ss_pred CCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee-EEeccCceEEEEEecCCCCCCCCcch
Q 020756 157 DGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF-FKKMFDKLFQAEWKPVSPDKFGDISE 232 (321)
Q Consensus 157 ~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l-~~~~~~~~~~~~w~P~~~~~~~~~~~ 232 (321)
+.+....+.+| .++.+++||||...++++ .|+.+.+||+ .|+.+ ...+...|..++|+|....+.+....
T Consensus 181 ~~~l~~~~~gh~~~v~t~~vSpDGslcasGg------kdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~~at~~ 254 (315)
T KOG0279|consen 181 NCQLRTTFIGHSGYVNTVTVSPDGSLCASGG------KDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLCAATAT 254 (315)
T ss_pred CcchhhccccccccEEEEEECCCCCEEecCC------CCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEeeccCC
Confidence 99888888776 788999999999999988 5999999999 46666 44678899999999999888877554
Q ss_pred hhhcc
Q 020756 233 LIKSV 237 (321)
Q Consensus 233 ~~~~~ 237 (321)
.++.|
T Consensus 255 sIkIw 259 (315)
T KOG0279|consen 255 SIKIW 259 (315)
T ss_pred ceEEE
Confidence 44444
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.81 E-value=2.6e-18 Score=158.22 Aligned_cols=200 Identities=18% Similarity=0.341 Sum_probs=159.2
Q ss_pred CCCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC
Q 020756 1 MGSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR 80 (321)
Q Consensus 1 ~g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~ 80 (321)
||.++.+.||+.-. ++...+..|..+...++.|-.+....... +| |...+|.++.++. ......
T Consensus 294 ~~vD~ttilwd~~~---g~~~q~f~~~s~~~lDVdW~~~~~F~ts~--td---------~~i~V~kv~~~~P--~~t~~G 357 (524)
T KOG0273|consen 294 GGVDGTTILWDAHT---GTVKQQFEFHSAPALDVDWQSNDEFATSS--TD---------GCIHVCKVGEDRP--VKTFIG 357 (524)
T ss_pred ccCCccEEEEeccC---ceEEEeeeeccCCccceEEecCceEeecC--CC---------ceEEEEEecCCCc--ceeeec
Confidence 68889999999988 78888888888888999998886665432 11 3334555555554 333346
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeC-CCceeEEe--CCcCeeeEEEcCCC---------CeEEEEccCCCCC
Q 020756 81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPKG---------KFLCLAGFGNLPG 148 (321)
Q Consensus 81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~~~~--~~~~~~~~~~sPdG---------~~l~~~g~~n~~g 148 (321)
|.++|..+.|+|.|..|+.+ ..|++++||+. .......+ |...+.++.|||+| ..|+.++ .|+
T Consensus 358 H~g~V~alk~n~tg~LLaS~--SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas---~ds 432 (524)
T KOG0273|consen 358 HHGEVNALKWNPTGSLLASC--SDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASAS---FDS 432 (524)
T ss_pred ccCceEEEEECCCCceEEEe--cCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEee---cCC
Confidence 99999999999999999998 45789999997 45566666 78889999999975 4778888 789
Q ss_pred cEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe--ccCceEEEEEecCCC
Q 020756 149 DMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MFDKLFQAEWKPVSP 224 (321)
Q Consensus 149 ~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~--~~~~~~~~~w~P~~~ 224 (321)
+|.+||+..+.++.++..| .++.++|||+|+|+|+++. |++|+||+.....+++. ....+..++|+-++.
T Consensus 433 tV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~------dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~ 506 (524)
T KOG0273|consen 433 TVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSL------DGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGD 506 (524)
T ss_pred eEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCC------CCeeEeccccchheeEeecCCCeEEEEEEcCCCC
Confidence 9999999999999999776 8999999999999999994 99999999965555443 334689999998875
Q ss_pred CCC
Q 020756 225 DKF 227 (321)
Q Consensus 225 ~~~ 227 (321)
.+.
T Consensus 507 kl~ 509 (524)
T KOG0273|consen 507 KLG 509 (524)
T ss_pred EEE
Confidence 443
No 13
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.80 E-value=1.3e-19 Score=164.22 Aligned_cols=201 Identities=14% Similarity=0.310 Sum_probs=158.2
Q ss_pred CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC
Q 020756 4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG 83 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~ 83 (321)
-|.+.||+...+. .+-|-| .+..-+..|.|+++|++++.. |..| .|.+++.+-.....+.-.|..
T Consensus 117 SGEFtLWNg~~fn-FEtilQ--aHDs~Vr~m~ws~~g~wmiSg-----D~gG-------~iKyWqpnmnnVk~~~ahh~e 181 (464)
T KOG0284|consen 117 SGEFTLWNGTSFN-FETILQ--AHDSPVRTMKWSHNGTWMISG-----DKGG-------MIKYWQPNMNNVKIIQAHHAE 181 (464)
T ss_pred cccEEEecCceee-HHHHhh--hhcccceeEEEccCCCEEEEc-----CCCc-------eEEecccchhhhHHhhHhhhh
Confidence 4677788776542 222222 234567799999999998763 2222 245555555544555555678
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEeCCC---ceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE
Q 020756 84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ 160 (321)
Q Consensus 84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~---~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~ 160 (321)
.|.+++|||+...|+.| ..|++|.|||... +.+..-|...+.++.|+|.-.+|+++| .|..|++||.++++|
T Consensus 182 aIRdlafSpnDskF~t~--SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgs---kDnlVKlWDprSg~c 256 (464)
T KOG0284|consen 182 AIRDLAFSPNDSKFLTC--SDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGS---KDNLVKLWDPRSGSC 256 (464)
T ss_pred hhheeccCCCCceeEEe--cCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEcc---CCceeEeecCCCcch
Confidence 99999999999999998 5588999999843 234445788899999999999999999 888999999999999
Q ss_pred EEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-C-ce-eEEeccCceEEEEEecCCCCCCCCc
Q 020756 161 LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-G-SL-FFKKMFDKLFQAEWKPVSPDKFGDI 230 (321)
Q Consensus 161 i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g-~~-l~~~~~~~~~~~~w~P~~~~~~~~~ 230 (321)
+.++..| .|+.+.|+|+|.||++++ .|..++++|+. - ++ .++.|..++.++.|+|-.+.+|+..
T Consensus 257 l~tlh~HKntVl~~~f~~n~N~Llt~s------kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 257 LATLHGHKNTVLAVKFNPNGNWLLTGS------KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSG 325 (464)
T ss_pred hhhhhhccceEEEEEEcCCCCeeEEcc------CCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeec
Confidence 9999887 788999999999999999 59999999996 2 22 2778999999999999999999763
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.80 E-value=1.4e-18 Score=168.54 Aligned_cols=190 Identities=17% Similarity=0.233 Sum_probs=151.6
Q ss_pred cccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC
Q 020756 26 FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP 105 (321)
Q Consensus 26 ~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~ 105 (321)
-+...+....|+|+.++|+-++ . | +...||.++.... ..+--.|..||-+++|+|.|-+||++ ..|
T Consensus 449 GH~GPVyg~sFsPd~rfLlScS-E--D-------~svRLWsl~t~s~--~V~y~GH~~PVwdV~F~P~GyYFata--s~D 514 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCS-E--D-------SSVRLWSLDTWSC--LVIYKGHLAPVWDVQFAPRGYYFATA--SHD 514 (707)
T ss_pred cCCCceeeeeecccccceeecc-C--C-------cceeeeeccccee--EEEecCCCcceeeEEecCCceEEEec--CCC
Confidence 3456777889999999887752 1 1 2333444433332 22223688999999999999999996 668
Q ss_pred CeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCE
Q 020756 106 ASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRY 180 (321)
Q Consensus 106 ~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~ 180 (321)
++..+|..+ ..+.+.| |...+.|+.|+|+..++++++ .|.+|++||+.+|..+..|.+| .++.++|||+|+|
T Consensus 515 ~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGS---sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~ 591 (707)
T KOG0263|consen 515 QTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGS---SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRY 591 (707)
T ss_pred ceeeeeecccCCchhhhcccccccceEEECCcccccccCC---CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCce
Confidence 899999884 4455555 789999999999999999998 9999999999999999999998 7999999999999
Q ss_pred EEEEEcCCceeecCcEEEEeecC-cee--EEeccCceEEEEEecCCCCCCCCc-chhhhccc
Q 020756 181 FMTATTAPRLQIDNGIKIFHHNG-SLF--FKKMFDKLFQAEWKPVSPDKFGDI-SELIKSVG 238 (321)
Q Consensus 181 l~t~~s~~rl~~d~~v~iw~~~g-~~l--~~~~~~~~~~~~w~P~~~~~~~~~-~~~~~~~~ 238 (321)
|+++. .|+.|+|||+.+ .++ +.+|.+.++.++|+.++.-+.... ++....|.
T Consensus 592 LaSg~------ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 592 LASGD------EDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWD 647 (707)
T ss_pred Eeecc------cCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEE
Confidence 99999 499999999954 555 667888999999999998888763 44444443
No 15
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=2.1e-18 Score=155.42 Aligned_cols=201 Identities=17% Similarity=0.323 Sum_probs=151.7
Q ss_pred CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-eeeeecCC
Q 020756 3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRK 81 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~~~v~l~~ 81 (321)
-+..||+|++.+ ..++.+-.-++.-+..+.|+|||+.|+.-+. .|+.. +++...+. ..+-...|
T Consensus 135 GD~TvR~WD~~T---eTp~~t~KgH~~WVlcvawsPDgk~iASG~~----------dg~I~--lwdpktg~~~g~~l~gH 199 (480)
T KOG0271|consen 135 GDTTVRLWDLDT---ETPLFTCKGHKNWVLCVAWSPDGKKIASGSK----------DGSIR--LWDPKTGQQIGRALRGH 199 (480)
T ss_pred CCceEEeeccCC---CCcceeecCCccEEEEEEECCCcchhhcccc----------CCeEE--EecCCCCCcccccccCc
Confidence 367899999999 7889888889999999999999999987431 14433 44432221 22222358
Q ss_pred CCCeEEEEECc-----CCCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEE
Q 020756 82 EGPVHDVQWSY-----SGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW 153 (321)
Q Consensus 82 ~~~v~~~~wsP-----~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw 153 (321)
...|.+++|.| .+++|+.. ..|+.+.|||+... .+..+ |..+|.|+.|--+| +|.+++ .|++|++|
T Consensus 200 ~K~It~Lawep~hl~p~~r~las~--skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS---~DrtIkvw 273 (480)
T KOG0271|consen 200 KKWITALAWEPLHLVPPCRRLASS--SKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGS---QDRTIKVW 273 (480)
T ss_pred ccceeEEeecccccCCCccceecc--cCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecC---CCceEEEE
Confidence 89999999965 67777774 67899999999654 44444 89999999997544 666666 78899999
Q ss_pred ECCCCeEEE-----------------------------------------------------------------------
Q 020756 154 DYVDGKQLG----------------------------------------------------------------------- 162 (321)
Q Consensus 154 D~~~~~~i~----------------------------------------------------------------------- 162 (321)
+...|+++.
T Consensus 274 ~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p 353 (480)
T KOG0271|consen 274 RALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNP 353 (480)
T ss_pred EccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecc
Confidence 876643221
Q ss_pred --------eeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee--EEeccCceEEEEEecCCCCCCCC
Q 020756 163 --------TTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF--FKKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 163 --------~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l--~~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
...+| -+.++.|||||+|||+++ .|..|+||+- +|+.+ +.+|...||+++|+.|+..+.+.
T Consensus 354 ~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaS------FDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~ 427 (480)
T KOG0271|consen 354 FKSKKPITRMTGHQALVNHVSFSPDGRYIASAS------FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSG 427 (480)
T ss_pred cccccchhhhhchhhheeeEEECCCccEEEEee------cccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEc
Confidence 11222 345679999999999999 5999999997 68877 78899999999999998877765
Q ss_pred c
Q 020756 230 I 230 (321)
Q Consensus 230 ~ 230 (321)
.
T Consensus 428 S 428 (480)
T KOG0271|consen 428 S 428 (480)
T ss_pred C
Confidence 4
No 16
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.80 E-value=1.8e-18 Score=158.63 Aligned_cols=224 Identities=21% Similarity=0.316 Sum_probs=160.9
Q ss_pred CCceEEEEEcCCcCCCCcee--------eeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-
Q 020756 3 SPASVQIYACGKDLQSQPLA--------RRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH- 73 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~~i~--------~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~- 73 (321)
--+.|-||++.... ..+.. ....++.+...+.||+.-...++..+.| +...++.+...+..
T Consensus 145 ~~~dv~Vfd~tk~~-s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d---------~~i~lwdi~~~~~~~ 214 (422)
T KOG0264|consen 145 SSGDVYVFDYTKHP-SKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD---------HTICLWDINAESKED 214 (422)
T ss_pred CCCCEEEEEeccCC-CcccccccCCCceEEEeecccccccccccccceeEeeccCC---------CcEEEEeccccccCC
Confidence 34678899998743 22221 4555666678899999988777754322 33345555443331
Q ss_pred ----eeeeecCCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeCCC--c-eeEEe--CCcCeeeEEEcCCCCeEEEEcc
Q 020756 74 ----EGLVPLRKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKC--R-PILEL--GSGPYNTVRWNPKGKFLCLAGF 143 (321)
Q Consensus 74 ----~~~v~l~~~~~v~~~~wsP~g~-~l~~~~g~~~~~i~i~d~~~--~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~ 143 (321)
...+.-.|+..|.+++|+|... .|+.+ ..++.+.|||++. . +.+.. |.+.+++++|+|.+.+|+.++
T Consensus 215 ~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv--~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~- 291 (422)
T KOG0264|consen 215 KVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV--GDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATG- 291 (422)
T ss_pred ccccceEEeecCCcceehhhccccchhhheee--cCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEec-
Confidence 1122234899999999999665 55555 4478999999984 2 22222 789999999999888766655
Q ss_pred CCCCCcEEEEECCCC-eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec--C-------------ce
Q 020756 144 GNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--G-------------SL 205 (321)
Q Consensus 144 ~n~~g~i~iwD~~~~-~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~--g-------------~~ 205 (321)
+.|++|.+||+++. +++.+++.| .+.++.|||+-..++..+. .|+.+.|||++ | ++
T Consensus 292 -S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg-----~D~rl~vWDls~ig~eq~~eda~dgppEl 365 (422)
T KOG0264|consen 292 -SADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG-----TDRRLNVWDLSRIGEEQSPEDAEDGPPEL 365 (422)
T ss_pred -cCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc-----cCCcEEEEeccccccccChhhhccCCcce
Confidence 27999999999987 578888887 7999999998776665554 39999999993 1 12
Q ss_pred e--EEeccCceEEEEEecCCCCCCCC--cchhhhcccccccccc
Q 020756 206 F--FKKMFDKLFQAEWKPVSPDKFGD--ISELIKSVGSLKVAET 245 (321)
Q Consensus 206 l--~~~~~~~~~~~~w~P~~~~~~~~--~~~~~~~~~~~~~~~~ 245 (321)
+ +.+|...|.+++|+|..|.++.. .+++.+.|++......
T Consensus 366 lF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~i~~ 409 (422)
T KOG0264|consen 366 LFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAENIYN 409 (422)
T ss_pred eEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccccccC
Confidence 3 66788999999999999998866 4788888887755443
No 17
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.79 E-value=1.2e-17 Score=161.16 Aligned_cols=200 Identities=13% Similarity=0.193 Sum_probs=154.2
Q ss_pred ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756 5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP 84 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~ 84 (321)
|...||.+|. ...|.+.+........+.||..|+.|++-+. + .|.--+|-|.... -..-+-.|...
T Consensus 287 G~f~LyelP~---f~lih~LSis~~~I~t~~~N~tGDWiA~g~~-------k--lgQLlVweWqsEs--YVlKQQgH~~~ 352 (893)
T KOG0291|consen 287 GEFGLYELPD---FNLIHSLSISDQKILTVSFNSTGDWIAFGCS-------K--LGQLLVWEWQSES--YVLKQQGHSDR 352 (893)
T ss_pred CeeEEEecCC---ceEEEEeecccceeeEEEecccCCEEEEcCC-------c--cceEEEEEeeccc--eeeeccccccc
Confidence 4567999999 6899999999899999999999999999632 1 1332344433222 12222347889
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEE
Q 020756 85 VHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL 161 (321)
Q Consensus 85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i 161 (321)
+.++++||||+.+++ |..|++|+|||.. +-.+.+| |+..+..+.|+-.|+.|++++ +||+|+.||+..++..
T Consensus 353 i~~l~YSpDgq~iaT--G~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssS---LDGtVRAwDlkRYrNf 427 (893)
T KOG0291|consen 353 ITSLAYSPDGQLIAT--GAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSS---LDGTVRAWDLKRYRNF 427 (893)
T ss_pred eeeEEECCCCcEEEe--ccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEee---cCCeEEeeeeccccee
Confidence 999999999999998 7889999999984 4466666 888899999999999999988 8888888888764332
Q ss_pred E--------------------------------------------eeeCC--CeeeEEEccCCCEEEEEEcCCceeecCc
Q 020756 162 G--------------------------------------------TTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNG 195 (321)
Q Consensus 162 ~--------------------------------------------~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~ 195 (321)
. .+.+| .+..++|+|+|..|++++ -|++
T Consensus 428 RTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~S------WDkT 501 (893)
T KOG0291|consen 428 RTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGS------WDKT 501 (893)
T ss_pred eeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEecc------ccce
Confidence 2 23344 566678999999999988 5999
Q ss_pred EEEEeecCc--ee-EEeccCceEEEEEecCCCCCCCC
Q 020756 196 IKIFHHNGS--LF-FKKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 196 v~iw~~~g~--~l-~~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
|+|||+-.. .+ .-.....+..++++|++..+.-.
T Consensus 502 VRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVa 538 (893)
T KOG0291|consen 502 VRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVA 538 (893)
T ss_pred EEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEE
Confidence 999998443 33 44566789999999999888754
No 18
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.79 E-value=1.2e-17 Score=144.08 Aligned_cols=196 Identities=15% Similarity=0.279 Sum_probs=151.7
Q ss_pred CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC
Q 020756 4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG 83 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~ 83 (321)
.-.||+|++.+ ++++++.. .+.+...+.|+|+|+++++.-. .+ .|..++.... .........-
T Consensus 86 dk~ir~wd~r~---~k~~~~i~-~~~eni~i~wsp~g~~~~~~~k-----dD-------~it~id~r~~-~~~~~~~~~~ 148 (313)
T KOG1407|consen 86 DKTIRIWDIRS---GKCTARIE-TKGENINITWSPDGEYIAVGNK-----DD-------RITFIDARTY-KIVNEEQFKF 148 (313)
T ss_pred CceEEEEEecc---CcEEEEee-ccCcceEEEEcCCCCEEEEecC-----cc-------cEEEEEeccc-ceeehhcccc
Confidence 45799999999 78887766 4678889999999999999622 11 2444444322 1222222345
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEeC-CCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE
Q 020756 84 PVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ 160 (321)
Q Consensus 84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~ 160 (321)
-++.+.|+-+++.|+...| -|.+.|... ..+++.++ |...+-+|.|+|+|+++++++ .|..+.+||++..-|
T Consensus 149 e~ne~~w~~~nd~Fflt~G--lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~Gs---ADAlvSLWD~~ELiC 223 (313)
T KOG1407|consen 149 EVNEISWNNSNDLFFLTNG--LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGS---ADALVSLWDVDELIC 223 (313)
T ss_pred eeeeeeecCCCCEEEEecC--CceEEEEeccccccccccccCCcceEEEEECCCCceEeecc---ccceeeccChhHhhh
Confidence 6889999988887777533 468888776 56778877 777788899999999999999 999999999998888
Q ss_pred EEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEe-ccCceEEEEEecCCCCCC
Q 020756 161 LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK-MFDKLFQAEWKPVSPDKF 227 (321)
Q Consensus 161 i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~-~~~~~~~~~w~P~~~~~~ 227 (321)
+..+... .+..++||.||++||+++ .|.-|-|-++ +|..+.+. .....+.|+|+|..+.+.
T Consensus 224 ~R~isRldwpVRTlSFS~dg~~lASaS------EDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLA 288 (313)
T KOG1407|consen 224 ERCISRLDWPVRTLSFSHDGRMLASAS------EDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLA 288 (313)
T ss_pred heeeccccCceEEEEeccCcceeeccC------ccceEEeEecccCCeEEEeeccCCceeEEecCCCceee
Confidence 8877775 788899999999999999 5888988887 78888665 556899999999875443
No 19
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.79 E-value=8.6e-18 Score=154.83 Aligned_cols=199 Identities=20% Similarity=0.339 Sum_probs=157.7
Q ss_pred CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756 3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE 82 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~ 82 (321)
..|.+|||+.+. ..+.+..+++..+..++||.+|+||+.. ++|++ ..+++...+...+..-.|+
T Consensus 255 ~~G~~riw~~~G----~l~~tl~~HkgPI~slKWnk~G~yilS~---~vD~t---------tilwd~~~g~~~q~f~~~s 318 (524)
T KOG0273|consen 255 EDGEARIWNKDG----NLISTLGQHKGPIFSLKWNKKGTYILSG---GVDGT---------TILWDAHTGTVKQQFEFHS 318 (524)
T ss_pred cCcEEEEEecCc----hhhhhhhccCCceEEEEEcCCCCEEEec---cCCcc---------EEEEeccCceEEEeeeecc
Confidence 368899999876 6788889999999999999999999885 23322 3344543332233222467
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 159 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~ 159 (321)
.+-.|+.|-.+. .|+++ ..++.|.++-+.. .++.+| |++.|+.+.|+|.|.+|++++ .|++++||.+....
T Consensus 319 ~~~lDVdW~~~~-~F~ts--~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~S---dD~TlkiWs~~~~~ 392 (524)
T KOG0273|consen 319 APALDVDWQSND-EFATS--STDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCS---DDGTLKIWSMGQSN 392 (524)
T ss_pred CCccceEEecCc-eEeec--CCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEec---CCCeeEeeecCCCc
Confidence 777899998654 57765 5577899998854 477777 899999999999999999999 99999999998888
Q ss_pred EEEeeeCC--CeeeEEEccCC---------CEEEEEEcCCceeecCcEEEEee-cCcee--EEeccCceEEEEEecCCCC
Q 020756 160 QLGTTRAE--CSVTSEWSPDG---------RYFMTATTAPRLQIDNGIKIFHH-NGSLF--FKKMFDKLFQAEWKPVSPD 225 (321)
Q Consensus 160 ~i~~~~~~--~~~~~~wSpdG---------~~l~t~~s~~rl~~d~~v~iw~~-~g~~l--~~~~~~~~~~~~w~P~~~~ 225 (321)
+...+.+| .++.+.|||+| ..|++++. |+.|++||+ +|..+ +..|...||+++++|++.+
T Consensus 393 ~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~------dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~y 466 (524)
T KOG0273|consen 393 SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF------DSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRY 466 (524)
T ss_pred chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec------CCeEEEEEccCCceeEeeccCCCceEEEEecCCCcE
Confidence 88888777 79999999955 45777774 999999998 67777 4468889999999999998
Q ss_pred CCCC
Q 020756 226 KFGD 229 (321)
Q Consensus 226 ~~~~ 229 (321)
+.+.
T Consensus 467 lAsG 470 (524)
T KOG0273|consen 467 LASG 470 (524)
T ss_pred EEec
Confidence 8875
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.78 E-value=1.4e-17 Score=161.65 Aligned_cols=186 Identities=18% Similarity=0.242 Sum_probs=140.6
Q ss_pred CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc--eeeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 020756 29 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA 106 (321)
Q Consensus 29 ~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~--~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~ 106 (321)
.....+.++++|++++... .++. +..+...+.. .......|...|++++|+|+|++++. +.+|.
T Consensus 160 ~sv~~~~fs~~g~~l~~~~---~~~~---------i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s--~s~D~ 225 (456)
T KOG0266|consen 160 PSVTCVDFSPDGRALAAAS---SDGL---------IRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLS--GSDDK 225 (456)
T ss_pred CceEEEEEcCCCCeEEEcc---CCCc---------EEEeecccccchhhccccccccceeeeEECCCCcEEEE--ecCCc
Confidence 3455688999999965542 1111 2222222221 12222468889999999999997777 57899
Q ss_pred eEEEEeC-CC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCE
Q 020756 107 SATIFNK-KC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRY 180 (321)
Q Consensus 107 ~i~i~d~-~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~ 180 (321)
+++|||+ .. ..+.++ |...++++.|+|+|++|++++ .|++|+|||+++++++..+..| .++.++|++||++
T Consensus 226 tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs---~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~ 302 (456)
T KOG0266|consen 226 TLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGS---DDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNL 302 (456)
T ss_pred eEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEec---CCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCE
Confidence 9999999 33 466666 889999999999999999999 9999999999999999999988 7889999999999
Q ss_pred EEEEEcCCceeecCcEEEEeecCce--e---EEeccC--ceEEEEEecCCCCCCCCc-chhhhcc
Q 020756 181 FMTATTAPRLQIDNGIKIFHHNGSL--F---FKKMFD--KLFQAEWKPVSPDKFGDI-SELIKSV 237 (321)
Q Consensus 181 l~t~~s~~rl~~d~~v~iw~~~g~~--l---~~~~~~--~~~~~~w~P~~~~~~~~~-~~~~~~~ 237 (321)
|++++ .|+.++|||+.+.. + ...+.. .++.+.|+|++.+++... +...+.|
T Consensus 303 l~s~s------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w 361 (456)
T KOG0266|consen 303 LVSAS------YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLW 361 (456)
T ss_pred EEEcC------CCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEE
Confidence 99997 59999999996554 2 222222 589999999999998763 3244444
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.77 E-value=1.3e-18 Score=157.82 Aligned_cols=186 Identities=16% Similarity=0.278 Sum_probs=150.1
Q ss_pred cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 020756 28 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS 107 (321)
Q Consensus 28 ~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~ 107 (321)
+..+..+.|.|+|+.|++.++ .|+..||....+. -..+...|+.+|..+.||++|.+++. |+.++.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~----------SGEFtLWNg~~fn--FEtilQaHDs~Vr~m~ws~~g~wmiS--gD~gG~ 161 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQ----------SGEFTLWNGTSFN--FETILQAHDSPVRTMKWSHNGTWMIS--GDKGGM 161 (464)
T ss_pred ccceeeEEEcCCCceeEeecc----------cccEEEecCceee--HHHHhhhhcccceeEEEccCCCEEEE--cCCCce
Confidence 567779999999999998643 3777777432221 12233369999999999999999887 788899
Q ss_pred EEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEE
Q 020756 108 ATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFM 182 (321)
Q Consensus 108 i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~ 182 (321)
|++|+...+.++.+ |...|.+++|||....+++++ .||.|+|||....+.-..+.+| .+.+++|+|.-.+|+
T Consensus 162 iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~S---dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLia 238 (464)
T KOG0284|consen 162 IKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCS---DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIA 238 (464)
T ss_pred EEecccchhhhHHhhHhhhhhhheeccCCCCceeEEec---CCCeEEEEeccCCchhheeccCCCCcceeccCCccceeE
Confidence 99999877666655 458899999999999999999 9999999998877665556666 899999999999999
Q ss_pred EEEcCCceeecCcEEEEee-cCcee--EEeccCceEEEEEecCCCCCCCCc-chhhhc
Q 020756 183 TATTAPRLQIDNGIKIFHH-NGSLF--FKKMFDKLFQAEWKPVSPDKFGDI-SELIKS 236 (321)
Q Consensus 183 t~~s~~rl~~d~~v~iw~~-~g~~l--~~~~~~~~~~~~w~P~~~~~~~~~-~~~~~~ 236 (321)
+++ .||.|++||. +|.++ ...|...|..+.|+|+.+.+++.. |..++.
T Consensus 239 sgs------kDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv 290 (464)
T KOG0284|consen 239 SGS------KDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKV 290 (464)
T ss_pred Ecc------CCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEE
Confidence 999 4999999998 67777 556778899999999999888764 444433
No 22
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.77 E-value=5.7e-17 Score=157.31 Aligned_cols=201 Identities=18% Similarity=0.277 Sum_probs=147.2
Q ss_pred CCceEEEEEcCCcCCCC--ceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEc-CCCceeeeec
Q 020756 3 SPASVQIYACGKDLQSQ--PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT-DGTHEGLVPL 79 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~--~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~-~g~~~~~v~l 79 (321)
..+.+++|.... .. .+....-+...+..+.|+|+|.+++... .|. .|..+++ .+....++..
T Consensus 179 ~~~~i~~~~~~~---~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s---~D~---------tiriwd~~~~~~~~~~l~ 243 (456)
T KOG0266|consen 179 SDGLIRIWKLEG---IKSNLLRELSGHTRGVSDVAFSPDGSYLLSGS---DDK---------TLRIWDLKDDGRNLKTLK 243 (456)
T ss_pred CCCcEEEeeccc---ccchhhccccccccceeeeEECCCCcEEEEec---CCc---------eEEEeeccCCCeEEEEec
Confidence 457788999855 33 4444455677899999999999776542 121 2455555 3333444445
Q ss_pred CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756 80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 156 (321)
Q Consensus 80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~ 156 (321)
.|...|++++|+|+|+.++. |..|++|+|||+++ ..+..+ |...++.++|+++|++|++++ .|+.|+|||+.
T Consensus 244 gH~~~v~~~~f~p~g~~i~S--gs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s---~d~~i~vwd~~ 318 (456)
T KOG0266|consen 244 GHSTYVTSVAFSPDGNLLVS--GSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSAS---YDGTIRVWDLE 318 (456)
T ss_pred CCCCceEEEEecCCCCEEEE--ecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcC---CCccEEEEECC
Confidence 79999999999999966666 57799999999975 555555 889999999999999999998 89999999999
Q ss_pred CCe--EEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee--EEeccCc---eEEEEEecCCC
Q 020756 157 DGK--QLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFDK---LFQAEWKPVSP 224 (321)
Q Consensus 157 ~~~--~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~~~~~---~~~~~w~P~~~ 224 (321)
++. ++..+..+ .++.+.|||+|.||++++ .|+.+++|++. +..+ +..+... +..+...+...
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~------~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (456)
T KOG0266|consen 319 TGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSAS------LDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGK 392 (456)
T ss_pred CCceeeeecccCCCCCCceeEEEECCCCcEEEEec------CCCeEEEEEccCCcceeeecccCCcceeEecccccCCCC
Confidence 998 44555443 368899999999999999 48899999997 4443 4444443 22333345555
Q ss_pred CCCCC
Q 020756 225 DKFGD 229 (321)
Q Consensus 225 ~~~~~ 229 (321)
.+++.
T Consensus 393 ~i~sg 397 (456)
T KOG0266|consen 393 LIYSG 397 (456)
T ss_pred eEEEE
Confidence 55544
No 23
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.77 E-value=2.9e-16 Score=138.48 Aligned_cols=202 Identities=16% Similarity=0.266 Sum_probs=151.3
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK 81 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~ 81 (321)
+..+.|+||++.. ++.+.....+......+.|+++++.++... . ...++.++............|
T Consensus 70 ~~~~~i~i~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-----~-------~~~i~~~~~~~~~~~~~~~~~ 134 (289)
T cd00200 70 SSDKTIRLWDLET---GECVRTLTGHTSYVSSVAFSPDGRILSSSS-----R-------DKTIKVWDVETGKCLTTLRGH 134 (289)
T ss_pred cCCCeEEEEEcCc---ccceEEEeccCCcEEEEEEcCCCCEEEEec-----C-------CCeEEEEECCCcEEEEEeccC
Confidence 3578999999988 566666666666788999999977665531 0 122455555432222222247
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 158 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~ 158 (321)
.+.|.++.|+|++..+++. ..++.+.+||++ .+.+..+ +...+.++.|+|+++.|++++ .++.|.+||+.++
T Consensus 135 ~~~i~~~~~~~~~~~l~~~--~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~ 209 (289)
T cd00200 135 TDWVNSVAFSPDGTFVASS--SQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSS---SDGTIKLWDLSTG 209 (289)
T ss_pred CCcEEEEEEcCcCCEEEEE--cCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEec---CCCcEEEEECCCC
Confidence 7899999999998877763 457899999996 4444444 566899999999999999998 6899999999988
Q ss_pred eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee--EEeccCceEEEEEecCCCCCCCC
Q 020756 159 KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 159 ~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
+.+..+..+ .+..+.|+|++.+++++. .++.+++|++. ++.+ ...+...+..+.|+|+...++..
T Consensus 210 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~------~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 279 (289)
T cd00200 210 KCLGTLRGHENGVNSVAFSPDGYLLASGS------EDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASG 279 (289)
T ss_pred ceecchhhcCCceEEEEEcCCCcEEEEEc------CCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEe
Confidence 888877444 688899999988888877 48999999996 4444 33455689999999987766654
No 24
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=99.76 E-value=1.7e-16 Score=136.19 Aligned_cols=183 Identities=14% Similarity=0.232 Sum_probs=139.3
Q ss_pred CCCceEEEEEcCCcCCCCceeeeec-ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC-ceeeeec
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSF-FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPL 79 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~-f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-~~~~v~l 79 (321)
|.+|.|+||++.+ +.+++.| |++.+..+.-+|+...|++. |.+ |. +..+++... ......-
T Consensus 102 seDgt~kIWdlR~-----~~~qR~~~~~spVn~vvlhpnQteLis~-----dqs-----g~--irvWDl~~~~c~~~liP 164 (311)
T KOG0315|consen 102 SEDGTVKIWDLRS-----LSCQRNYQHNSPVNTVVLHPNQTELISG-----DQS-----GN--IRVWDLGENSCTHELIP 164 (311)
T ss_pred CCCceEEEEeccC-----cccchhccCCCCcceEEecCCcceEEee-----cCC-----Cc--EEEEEccCCccccccCC
Confidence 6789999999987 3445554 45778888999998888875 222 33 344444332 1222222
Q ss_pred CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-------ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcE
Q 020756 80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-------RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDM 150 (321)
Q Consensus 80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-------~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i 150 (321)
+...+|.++...|||+.++.+ ...|...+|++-+ .++..| |.+.+-.+.+|||+++|++++ .|.++
T Consensus 165 e~~~~i~sl~v~~dgsml~a~--nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~s---sdktv 239 (311)
T KOG0315|consen 165 EDDTSIQSLTVMPDGSMLAAA--NNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCS---SDKTV 239 (311)
T ss_pred CCCcceeeEEEcCCCcEEEEe--cCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeec---CCceE
Confidence 345789999999999999886 6678999999843 345555 788899999999999999999 99999
Q ss_pred EEEECCCC-eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee--EEeccC
Q 020756 151 AFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFD 212 (321)
Q Consensus 151 ~iwD~~~~-~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~~~~ 212 (321)
+||+.++. +.-..+++| .+.++.||-||+||+|+++ |+..+||++. |+.+ +.+|..
T Consensus 240 ~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTass------d~~~rlW~~~~~k~v~qy~gh~K 301 (311)
T KOG0315|consen 240 KIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASS------DHTARLWDLSAGKEVRQYQGHHK 301 (311)
T ss_pred EEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCC------CCceeecccccCceeeecCCccc
Confidence 99999988 555666777 7899999999999999997 9999999994 5543 445544
No 25
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.75 E-value=2.2e-16 Score=147.33 Aligned_cols=178 Identities=21% Similarity=0.373 Sum_probs=136.2
Q ss_pred CceEEEEEcCCcCCCCce--eeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756 4 PASVQIYACGKDLQSQPL--ARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK 81 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i--~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~ 81 (321)
-|.||||+..+ ...+ .+...|-..+-++.|+.+|++|+++- .|+..+|. ++.++. |.....+. .|
T Consensus 80 sG~vRIWdtt~---~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avG------EGrerfg~--~F~~DS-G~SvGei~-Gh 146 (603)
T KOG0318|consen 80 SGKVRIWDTTQ---KEHILKNEFQVLAGPIKDISWDFDSKRIAAVG------EGRERFGH--VFLWDS-GNSVGEIT-GH 146 (603)
T ss_pred cCcEEEEeccC---cceeeeeeeeecccccccceeCCCCcEEEEEe------cCccceeE--EEEecC-CCccceee-cc
Confidence 47899999988 3333 33344667888999999999999863 24444553 334333 32222332 57
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeC---CCceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNK---KCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 158 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~---~~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~ 158 (321)
...|+++.|-|..-+ -++.+..|..+.+|+- +.+..+.-|...+++++|||||++++++| .||.|++||-.++
T Consensus 147 Sr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~g---sDgki~iyDGktg 222 (603)
T KOG0318|consen 147 SRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAG---SDGKIYIYDGKTG 222 (603)
T ss_pred ceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEec---CCccEEEEcCCCc
Confidence 889999999997653 3333677999999985 22222333788999999999999999999 9999999999999
Q ss_pred eEEEeee---CC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc
Q 020756 159 KQLGTTR---AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 204 (321)
Q Consensus 159 ~~i~~~~---~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~ 204 (321)
+++..++ +| .+..++||||+..|+|++ .|..++|||++..
T Consensus 223 e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~S------aDkt~KIWdVs~~ 267 (603)
T KOG0318|consen 223 EKVGELEDSDAHKGSIFALSWSPDSTQFLTVS------ADKTIKIWDVSTN 267 (603)
T ss_pred cEEEEecCCCCccccEEEEEECCCCceEEEec------CCceEEEEEeecc
Confidence 9999988 45 789999999999999999 5999999999544
No 26
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.75 E-value=5.8e-16 Score=136.58 Aligned_cols=200 Identities=14% Similarity=0.206 Sum_probs=150.5
Q ss_pred CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756 3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE 82 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~ 82 (321)
..+.|+||++.. ++.+.....+......+.|+++++.+++... .| .++.++............+.
T Consensus 29 ~~g~i~i~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----------~~--~i~i~~~~~~~~~~~~~~~~ 93 (289)
T cd00200 29 GDGTIKVWDLET---GELLRTLKGHTGPVRDVAASADGTYLASGSS----------DK--TIRLWDLETGECVRTLTGHT 93 (289)
T ss_pred cCcEEEEEEeeC---CCcEEEEecCCcceeEEEECCCCCEEEEEcC----------CC--eEEEEEcCcccceEEEeccC
Confidence 468999999988 5566666555556669999999988776521 12 24555554432222223467
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 159 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~ 159 (321)
..|.++.|+|+++.+++. ..++.+.+||+. .+.+..+ +...+.++.|+|++++|++++ .++.|.+||+++++
T Consensus 94 ~~i~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~~~~i~i~d~~~~~ 168 (289)
T cd00200 94 SYVSSVAFSPDGRILSSS--SRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSS---QDGTIKLWDLRTGK 168 (289)
T ss_pred CcEEEEEEcCCCCEEEEe--cCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEc---CCCcEEEEEccccc
Confidence 799999999998777663 457899999997 5555555 567899999999999888886 68999999999888
Q ss_pred EEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee--EEeccCceEEEEEecCCCCCCC
Q 020756 160 QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFDKLFQAEWKPVSPDKFG 228 (321)
Q Consensus 160 ~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~~~~~~~~~~w~P~~~~~~~ 228 (321)
.+..+..+ .+..+.|+|+|++|++++. ++.+++||+. ++.+ +..+...+..+.|+|+...++.
T Consensus 169 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~------~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 236 (289)
T cd00200 169 CVATLTGHTGEVNSVAFSPDGEKLLSSSS------DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236 (289)
T ss_pred cceeEecCccccceEEECCCcCEEEEecC------CCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEE
Confidence 77777765 5889999999999999884 8999999996 4444 2245568999999998554444
No 27
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.73 E-value=1.8e-15 Score=131.28 Aligned_cols=194 Identities=16% Similarity=0.248 Sum_probs=145.1
Q ss_pred CCCceEEEEEcCCcCCCCceee--e-ecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee
Q 020756 2 GSPASVQIYACGKDLQSQPLAR--R-SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP 78 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~--~-~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~ 78 (321)
|..-.||||+.... ..-... . -+.+..+..++|+|.|++|+... |.+...||. ..++.+++.-.
T Consensus 34 g~Dk~vriw~~~~~--~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS----------FD~t~~Iw~-k~~~efecv~~ 100 (312)
T KOG0645|consen 34 GTDKAVRIWSTSSG--DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS----------FDATVVIWK-KEDGEFECVAT 100 (312)
T ss_pred cCCceEEEEecCCC--CcEEEEEeccccchheeeeeeecCCCcEEEEee----------ccceEEEee-cCCCceeEEee
Confidence 56778999999851 221211 1 13567788999999999887642 223322332 22555566544
Q ss_pred cC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc------eeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEE
Q 020756 79 LR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR------PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMA 151 (321)
Q Consensus 79 l~-~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~------~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~ 151 (321)
|. |+..|.+++||++|.+||+| ..|..+.||.+... .+.+-|.+.|..+.|+|...+|++++ .|.+|+
T Consensus 101 lEGHEnEVK~Vaws~sG~~LATC--SRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~S---YDnTIk 175 (312)
T KOG0645|consen 101 LEGHENEVKCVAWSASGNYLATC--SRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCS---YDNTIK 175 (312)
T ss_pred eeccccceeEEEEcCCCCEEEEe--eCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcceeEEec---cCCeEE
Confidence 44 89999999999999999998 66889999987522 22333889999999999999999999 888999
Q ss_pred EEECC---CCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEeccCceEEEEEe
Q 020756 152 FWDYV---DGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWK 220 (321)
Q Consensus 152 iwD~~---~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~~~~~~~~w~ 220 (321)
+|+-. ..+++.++..+ .+..+.|++.|..|++++. |.+++||-+- .-+...+...+|++.|-
T Consensus 176 ~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd------D~tv~Iw~~~-~~~~~~~sr~~Y~v~W~ 242 (312)
T KOG0645|consen 176 VYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD------DGTVSIWRLY-TDLSGMHSRALYDVPWD 242 (312)
T ss_pred EEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC------CcceEeeeec-cCcchhcccceEeeeec
Confidence 99866 34889999887 5778999999999999994 9999999853 11233455789999997
No 28
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.73 E-value=1.6e-15 Score=132.81 Aligned_cols=204 Identities=14% Similarity=0.147 Sum_probs=158.5
Q ss_pred CCCceEEEEEcCCcCCCCce---eeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee
Q 020756 2 GSPASVQIYACGKDLQSQPL---ARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP 78 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i---~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~ 78 (321)
|......||++.+......+ ....-+..-.....|-.|+..| .. + |..+.-++++..+...+..
T Consensus 116 GLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~il-T~----------S--GD~TCalWDie~g~~~~~f 182 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHIL-TG----------S--GDMTCALWDIETGQQTQVF 182 (343)
T ss_pred CcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCceE-ec----------C--CCceEEEEEcccceEEEEe
Confidence 67788899999863211111 2222233344455666654433 21 1 6666788888777666666
Q ss_pred cCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEE
Q 020756 79 LRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD 154 (321)
Q Consensus 79 l~~~~~v~~~~wsP-~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD 154 (321)
..|.+.|.++.++| +++.|+. |.-|+..+|||++ +..+++| |+..||++.|.|+|--+++++ .|++.++||
T Consensus 183 ~GH~gDV~slsl~p~~~ntFvS--g~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGS---DD~tcRlyD 257 (343)
T KOG0286|consen 183 HGHTGDVMSLSLSPSDGNTFVS--GGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGS---DDATCRLYD 257 (343)
T ss_pred cCCcccEEEEecCCCCCCeEEe--cccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecC---CCceeEEEe
Confidence 68999999999999 8988888 6778999999996 4466666 889999999999999999998 999999999
Q ss_pred CCCCeEEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee--EEeccCceEEEEEecCCCCCC
Q 020756 155 YVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF--FKKMFDKLFQAEWKPVSPDKF 227 (321)
Q Consensus 155 ~~~~~~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l--~~~~~~~~~~~~w~P~~~~~~ 227 (321)
++..+.+..+... .++.++||-.||+|..+.. |.++.+||. .|+.+ +.+|...|..+.-+|++--+.
T Consensus 258 lRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~------d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~ 331 (343)
T KOG0286|consen 258 LRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYD------DFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVA 331 (343)
T ss_pred ecCCcEEeeeccCcccCCceeEEEcccccEEEeeec------CCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEE
Confidence 9998888888764 6788999999999999884 999999997 66655 678999999999999987666
Q ss_pred CC
Q 020756 228 GD 229 (321)
Q Consensus 228 ~~ 229 (321)
+.
T Consensus 332 Tg 333 (343)
T KOG0286|consen 332 TG 333 (343)
T ss_pred ec
Confidence 53
No 29
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=4.5e-16 Score=153.22 Aligned_cols=196 Identities=17% Similarity=0.243 Sum_probs=150.3
Q ss_pred CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC
Q 020756 4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG 83 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~ 83 (321)
.+.|.+|.+|++..+..+ .-|......+.++-+|+++++.. ....|.+++.+......+...|++
T Consensus 75 ~~tv~~y~fps~~~~~iL---~Rftlp~r~~~v~g~g~~iaags------------dD~~vK~~~~~D~s~~~~lrgh~a 139 (933)
T KOG1274|consen 75 QNTVLRYKFPSGEEDTIL---ARFTLPIRDLAVSGSGKMIAAGS------------DDTAVKLLNLDDSSQEKVLRGHDA 139 (933)
T ss_pred cceEEEeeCCCCCcccee---eeeeccceEEEEecCCcEEEeec------------CceeEEEEeccccchheeecccCC
Confidence 568999999995433334 33444677889999999998852 122367777766656677778999
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEE---------eC-CcCeeeEEEcCCCCeEEEEccCCCCCcEEE
Q 020756 84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILE---------LG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAF 152 (321)
Q Consensus 84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~---------~~-~~~~~~~~~sPdG~~l~~~g~~n~~g~i~i 152 (321)
+|.++.++|.|..||++ ..+|++++||+... ..++ +. ...+..++|+|+|..+++.+ .++.|.+
T Consensus 140 pVl~l~~~p~~~fLAvs--s~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~---~d~~Vkv 214 (933)
T KOG1274|consen 140 PVLQLSYDPKGNFLAVS--SCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP---VDNTVKV 214 (933)
T ss_pred ceeeeeEcCCCCEEEEE--ecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec---cCCeEEE
Confidence 99999999999999997 45889999999543 2222 22 44677899999988888888 8999999
Q ss_pred EECCCCeEEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEeccCceEEEEEecCCCCC
Q 020756 153 WDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDK 226 (321)
Q Consensus 153 wD~~~~~~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~~~~~~~~w~P~~~~~ 226 (321)
|+..+++....+... ....+.|||+|+|||+++ .++.|.|||..... .+.....|+..+|.|+.+.+
T Consensus 215 y~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~------~~g~I~vWnv~t~~-~~~~~~~Vc~~aw~p~~n~i 285 (933)
T KOG1274|consen 215 YSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAAST------LDGQILVWNVDTHE-RHEFKRAVCCEAWKPNANAI 285 (933)
T ss_pred EccCCceeheeecccccccceEEEEEcCCCcEEeeec------cCCcEEEEecccch-hccccceeEEEecCCCCCee
Confidence 999998776665542 467799999999999999 49999999997511 23445689999999988644
No 30
>PTZ00420 coronin; Provisional
Probab=99.72 E-value=4.8e-15 Score=145.68 Aligned_cols=183 Identities=11% Similarity=0.161 Sum_probs=127.6
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-----eee
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-----EGL 76 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-----~~~ 76 (321)
|..+.|+||++.. ..++.....+...+..+.|+|+...+++.++.| |...||.+...+.. +..
T Consensus 51 G~~gvI~L~~~~r---~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~D---------gtIrIWDi~t~~~~~~~i~~p~ 118 (568)
T PTZ00420 51 GLIGAIRLENQMR---KPPVIKLKGHTSSILDLQFNPCFSEILASGSED---------LTIRVWEIPHNDESVKEIKDPQ 118 (568)
T ss_pred CceeEEEeeecCC---CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCC---------CeEEEEECCCCCccccccccce
Confidence 4567788888876 456767777788899999999844444443222 33334433222210 011
Q ss_pred -eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEE
Q 020756 77 -VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW 153 (321)
Q Consensus 77 -v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw 153 (321)
....|...|.+++|+|++..+++. +..|+.|.|||++.. .+..+ +...+.++.|+|+|++|++++ .++.|+||
T Consensus 119 ~~L~gH~~~V~sVaf~P~g~~iLaS-gS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s---~D~~IrIw 194 (568)
T PTZ00420 119 CILKGHKKKISIIDWNPMNYYIMCS-SGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTC---VGKHMHII 194 (568)
T ss_pred EEeecCCCcEEEEEECCCCCeEEEE-EeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEe---cCCEEEEE
Confidence 122478899999999999876543 456899999999644 44455 567899999999999999988 88999999
Q ss_pred ECCCCeEEEeeeCCC--e-ee----EEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756 154 DYVDGKQLGTTRAEC--S-VT----SEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 154 D~~~~~~i~~~~~~~--~-~~----~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
|+++++.+..+..|. + .. ..|++|+.+|++++.... .++.|+|||+.
T Consensus 195 D~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~--~~R~VkLWDlr 248 (568)
T PTZ00420 195 DPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN--NMREMKLWDLK 248 (568)
T ss_pred ECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCC--CccEEEEEECC
Confidence 999999888887762 1 12 235699999999884210 12479999986
No 31
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=2.1e-15 Score=145.32 Aligned_cols=201 Identities=11% Similarity=0.121 Sum_probs=135.3
Q ss_pred ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756 5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP 84 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~ 84 (321)
..|.+|++.. ++ ......++.....+.|||||+.|++.... .|...||.++..+....++. .....
T Consensus 223 ~~i~i~dl~~---G~-~~~l~~~~~~~~~~~~SPDG~~La~~~~~---------~g~~~I~~~d~~tg~~~~lt-~~~~~ 288 (429)
T PRK03629 223 SALVIQTLAN---GA-VRQVASFPRHNGAPAFSPDGSKLAFALSK---------TGSLNLYVMDLASGQIRQVT-DGRSN 288 (429)
T ss_pred cEEEEEECCC---CC-eEEccCCCCCcCCeEECCCCCEEEEEEcC---------CCCcEEEEEECCCCCEEEcc-CCCCC
Confidence 3567777755 33 33444455556679999999999986421 13446899998776444443 33456
Q ss_pred eEEEEECcCCCEEEEEEccC-CCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEE
Q 020756 85 VHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL 161 (321)
Q Consensus 85 v~~~~wsP~g~~l~~~~g~~-~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i 161 (321)
+..+.|+|||+.|+++.... ...|.++|+.+.....+ .......+.|||||++|++.+..+....|++||+.+++..
T Consensus 289 ~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~ 368 (429)
T PRK03629 289 NTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ 368 (429)
T ss_pred cCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence 78999999999998875321 12566667766544444 3344567999999999999774334467999999887543
Q ss_pred EeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE--eccCceEEEEEecC
Q 020756 162 GTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK--KMFDKLFQAEWKPV 222 (321)
Q Consensus 162 ~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~--~~~~~~~~~~w~P~ 222 (321)
............|||||++|++++..- ....+.+++++|+.... .+...+.+.+|+|.
T Consensus 369 ~Lt~~~~~~~p~~SpDG~~i~~~s~~~---~~~~l~~~~~~G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 369 VLTDTFLDETPSIAPNGTMVIYSSSQG---MGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred EeCCCCCCCCceECCCCCEEEEEEcCC---CceEEEEEECCCCCeEECccCCCCcCCcccCCC
Confidence 322222345689999999999988510 12237788888876633 35567888999874
No 32
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.70 E-value=3.5e-16 Score=140.95 Aligned_cols=205 Identities=20% Similarity=0.316 Sum_probs=142.9
Q ss_pred CCceEEEEEcCCc-------------CCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEc
Q 020756 3 SPASVQIYACGKD-------------LQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT 69 (321)
Q Consensus 3 ~p~~v~v~~~~~~-------------~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~ 69 (321)
.-|+|.||++... ....++.+....+.....+.|||--+..+.. -|..+. +|++..
T Consensus 173 e~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Lls----GDc~~~-------I~lw~~ 241 (440)
T KOG0302|consen 173 ENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLS----GDCVKG-------IHLWEP 241 (440)
T ss_pred ccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccccc----Cccccc-------eEeeee
Confidence 4578999998751 1345778888888899999999954443321 122222 333322
Q ss_pred CCCc---eeeeecCCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeCCCce----eE-EeCCcCeeeEEEcCCCCeEEE
Q 020756 70 DGTH---EGLVPLRKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKCRP----IL-ELGSGPYNTVRWNPKGKFLCL 140 (321)
Q Consensus 70 ~g~~---~~~v~l~~~~~v~~~~wsP~g~-~l~~~~g~~~~~i~i~d~~~~~----~~-~~~~~~~~~~~~sPdG~~l~~ 140 (321)
..+. ..+-...|...|-+++|||.-+ .|+.| .-|+.|.|||++..+ +. .-|.+.||.|.||-+-.+|++
T Consensus 242 ~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaSc--S~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLas 319 (440)
T KOG0302|consen 242 STGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASC--SCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLAS 319 (440)
T ss_pred ccCceeecCccccccccchhhhccCCccCceEEee--ecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeee
Confidence 1110 1111224899999999999755 56665 558999999997652 22 238889999999998888999
Q ss_pred EccCCCCCcEEEEECCCC---eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC------------
Q 020756 141 AGFGNLPGDMAFWDYVDG---KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG------------ 203 (321)
Q Consensus 141 ~g~~n~~g~i~iwD~~~~---~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g------------ 203 (321)
++ .+|++.|||+++. +.+.+|+.| .|++++|+|...-++.++. .|+.+.|||+.-
T Consensus 320 G~---DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg-----~D~QitiWDlsvE~D~ee~~~~a~ 391 (440)
T KOG0302|consen 320 GG---DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG-----EDNQITIWDLSVEADEEEIDQEAA 391 (440)
T ss_pred cC---CCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc-----CCCcEEEEEeeccCChhhhccccc
Confidence 88 9999999999864 678888887 8999999996444443333 399999999821
Q ss_pred --------ceeEE-eccCceEEEEEecCCCCCCC
Q 020756 204 --------SLFFK-KMFDKLFQAEWKPVSPDKFG 228 (321)
Q Consensus 204 --------~~l~~-~~~~~~~~~~w~P~~~~~~~ 228 (321)
++|+. ....++.++.|+++-|.++-
T Consensus 392 ~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lv 425 (440)
T KOG0302|consen 392 EGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLV 425 (440)
T ss_pred cchhcCCceeEEEecchhHhhhheeccCCCCeEE
Confidence 13332 24568999999998887663
No 33
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.70 E-value=3e-16 Score=145.11 Aligned_cols=202 Identities=16% Similarity=0.248 Sum_probs=156.5
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK 81 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~ 81 (321)
|+++.|.||++-.. +.++++-..+...+.++.||.+|+.++... |.+ .|.++++..+ .+...+..
T Consensus 234 gmD~~vklW~vy~~--~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~s----------fD~--~lKlwDtETG-~~~~~f~~ 298 (503)
T KOG0282|consen 234 GMDGLVKLWNVYDD--RRCLRTFKGHRKPVRDASFNNCGTSFLSAS----------FDR--FLKLWDTETG-QVLSRFHL 298 (503)
T ss_pred CCCceEEEEEEecC--cceehhhhcchhhhhhhhccccCCeeeeee----------cce--eeeeeccccc-eEEEEEec
Confidence 67899999999984 788888888889999999999999998752 222 2556666555 34444555
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 158 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~ 158 (321)
...++++.|.||+..++++ |..+++|..||++.. .+++. |-+.++++.|-|+|+.+++++ .+++|.||+....
T Consensus 299 ~~~~~cvkf~pd~~n~fl~-G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS---Ddks~riWe~~~~ 374 (503)
T KOG0282|consen 299 DKVPTCVKFHPDNQNIFLV-GGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS---DDKSVRIWENRIP 374 (503)
T ss_pred CCCceeeecCCCCCcEEEE-ecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec---cCccEEEEEcCCC
Confidence 6788999999999665555 777999999999754 44555 678999999999999999998 8999999987753
Q ss_pred eEE--------------------------------E--------------eeeCC----CeeeEEEccCCCEEEEEEcCC
Q 020756 159 KQL--------------------------------G--------------TTRAE----CSVTSEWSPDGRYFMTATTAP 188 (321)
Q Consensus 159 ~~i--------------------------------~--------------~~~~~----~~~~~~wSpdG~~l~t~~s~~ 188 (321)
..+ . .+++| ....+.|||||++|++|.+
T Consensus 375 v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGds-- 452 (503)
T KOG0282|consen 375 VPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDS-- 452 (503)
T ss_pred ccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecC--
Confidence 211 1 12233 4456899999999999996
Q ss_pred ceeecCcEEEEeecC-cee--EEeccCceEEEEEecCCCCCCC
Q 020756 189 RLQIDNGIKIFHHNG-SLF--FKKMFDKLFQAEWKPVSPDKFG 228 (321)
Q Consensus 189 rl~~d~~v~iw~~~g-~~l--~~~~~~~~~~~~w~P~~~~~~~ 228 (321)
|+.+.+||... +++ .+.|...|..+.|+|..+..+.
T Consensus 453 ----dG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skva 491 (503)
T KOG0282|consen 453 ----DGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVA 491 (503)
T ss_pred ----CccEEEeechhhhhhhccccCCcceEEEEecCCCcceeE
Confidence 99999999954 343 5556778999999998776554
No 34
>PTZ00421 coronin; Provisional
Probab=99.70 E-value=1.3e-14 Score=141.33 Aligned_cols=184 Identities=11% Similarity=0.169 Sum_probs=129.2
Q ss_pred CCCceEEEEEcCCcC----CCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee
Q 020756 2 GSPASVQIYACGKDL----QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 77 (321)
Q Consensus 2 g~p~~v~v~~~~~~~----~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v 77 (321)
+.++.|+||+++... ...++.....+...+..+.|+|++..+++.++.| +. +.++++........
T Consensus 95 S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~D---------gt--VrIWDl~tg~~~~~ 163 (493)
T PTZ00421 95 SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGAD---------MV--VNVWDVERGKAVEV 163 (493)
T ss_pred eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCC---------CE--EEEEECCCCeEEEE
Confidence 467899999998721 1134555555667788899999986655554322 22 45555554422222
Q ss_pred ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcC-eeeEEEcCCCCeEEEEccC-CCCCcEEE
Q 020756 78 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGP-YNTVRWNPKGKFLCLAGFG-NLPGDMAF 152 (321)
Q Consensus 78 ~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~-~~~~~~sPdG~~l~~~g~~-n~~g~i~i 152 (321)
...|.+.|.+++|+|+|..|++ +..|+.|+|||++. ..+..+ |.+. ...+.|+|++..|+++|+. ..++.|.|
T Consensus 164 l~~h~~~V~sla~spdG~lLat--gs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~Vkl 241 (493)
T PTZ00421 164 IKCHSDQITSLEWNLDGSLLCT--TSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIML 241 (493)
T ss_pred EcCCCCceEEEEEECCCCEEEE--ecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEE
Confidence 2247889999999999999888 47789999999964 455555 4333 4568899999999888753 35789999
Q ss_pred EECCCCe-EEEeeeCC---CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756 153 WDYVDGK-QLGTTRAE---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 203 (321)
Q Consensus 153 wD~~~~~-~i~~~~~~---~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g 203 (321)
||+++.. .+.....+ .+..+.|++|+.+|++++. .|+.|++||+..
T Consensus 242 WDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggk-----gDg~Iriwdl~~ 291 (493)
T PTZ00421 242 WDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSK-----GEGNIRCFELMN 291 (493)
T ss_pred EeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEe-----CCCeEEEEEeeC
Confidence 9998753 34433322 3455689999999998874 389999999953
No 35
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.69 E-value=3.6e-15 Score=144.31 Aligned_cols=190 Identities=19% Similarity=0.268 Sum_probs=148.4
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEe----------------------------cccC
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQS----------------------------DVDK 53 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~----------------------------d~d~ 53 (321)
+.++.|+||+..+ +-++.+.+-+...+..+.|+..|+.++..+-. .+|.
T Consensus 369 ~eDgKVKvWn~~S---gfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~ 445 (893)
T KOG0291|consen 369 AEDGKVKVWNTQS---GFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP 445 (893)
T ss_pred cCCCcEEEEeccC---ceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC
Confidence 4678999999998 77888888888999999999998877654210 2355
Q ss_pred CCceee-c---ceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC--CceeEEe-CCcCe
Q 020756 54 TNQSYY-G---ESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPILEL-GSGPY 126 (321)
Q Consensus 54 t~~s~~-g---~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~--~~~~~~~-~~~~~ 126 (321)
+|..-. | .-.||.|+...++.-.+--.|++||.++.|+|+|+.|+. +.-|.+|++||+- ...+-++ ....+
T Consensus 446 sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS--~SWDkTVRiW~if~s~~~vEtl~i~sdv 523 (893)
T KOG0291|consen 446 SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLAS--GSWDKTVRIWDIFSSSGTVETLEIRSDV 523 (893)
T ss_pred CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEe--ccccceEEEEEeeccCceeeeEeeccce
Confidence 555421 2 234677777777666666679999999999999998888 6889999999983 3355566 56788
Q ss_pred eeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeC----------------------CCeeeEEEccCCCEEEEE
Q 020756 127 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA----------------------ECSVTSEWSPDGRYFMTA 184 (321)
Q Consensus 127 ~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~----------------------~~~~~~~wSpdG~~l~t~ 184 (321)
-.+.|+|||+.|+++. ++|+|.|||.+.+..+.++++ ...+.+++|+||.+|+++
T Consensus 524 l~vsfrPdG~elaVaT---ldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAg 600 (893)
T KOG0291|consen 524 LAVSFRPDGKELAVAT---LDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAG 600 (893)
T ss_pred eEEEEcCCCCeEEEEE---ecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEec
Confidence 8999999999999999 999999999987665543321 245679999999999999
Q ss_pred EcCCceeecCcEEEEeecCce
Q 020756 185 TTAPRLQIDNGIKIFHHNGSL 205 (321)
Q Consensus 185 ~s~~rl~~d~~v~iw~~~g~~ 205 (321)
+. .+.|+|||+..+.
T Consensus 601 G~------sn~iCiY~v~~~v 615 (893)
T KOG0291|consen 601 GE------SNSICIYDVPEGV 615 (893)
T ss_pred CC------cccEEEEECchhh
Confidence 94 8999999995443
No 36
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=8.4e-15 Score=127.12 Aligned_cols=186 Identities=15% Similarity=0.292 Sum_probs=137.6
Q ss_pred eecccCccceEEeCCC-CCeeEEEEEecccCCCceeecceeEEEEEcCCC--ceeeeec--CCCCCeEEEEECcCCCEEE
Q 020756 24 RSFFRCSTVQLNWNRG-STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT--HEGLVPL--RKEGPVHDVQWSYSGSEFA 98 (321)
Q Consensus 24 ~~~f~~~~~~~~Wsp~-G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~--~~~~v~l--~~~~~v~~~~wsP~g~~l~ 98 (321)
....+...-.+.|+|- |..|+. +.+| + .+-+++..+. -.+...+ .|+..|..++|+|.|++||
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAs-cg~D-----k------~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La 77 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILAS-CGTD-----K------AVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLA 77 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEe-ecCC-----c------eEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEE
Confidence 3444556778999998 774443 3322 1 1333333321 1222222 3788999999999999988
Q ss_pred EEEccCCCeEEEEeCC---CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC---eEEEeeeCC--C
Q 020756 99 VVYGFMPASATIFNKK---CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG---KQLGTTRAE--C 168 (321)
Q Consensus 99 ~~~g~~~~~i~i~d~~---~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~---~~i~~~~~~--~ 168 (321)
.. ..|+++.||... .+.+..+ |...|.+++||++|++|++++ .|..|.||..... +++..++.| .
T Consensus 78 ~a--SFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCS---RDKSVWiWe~deddEfec~aVL~~HtqD 152 (312)
T KOG0645|consen 78 SA--SFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCS---RDKSVWIWEIDEDDEFECIAVLQEHTQD 152 (312)
T ss_pred Ee--eccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEee---CCCeEEEEEecCCCcEEEEeeecccccc
Confidence 84 779999999653 2344444 889999999999999999999 9999999998743 788888877 7
Q ss_pred eeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Cc---ee--EEeccCceEEEEEecCCCCCCCCcch
Q 020756 169 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GS---LF--FKKMFDKLFQAEWKPVSPDKFGDISE 232 (321)
Q Consensus 169 ~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~---~l--~~~~~~~~~~~~w~P~~~~~~~~~~~ 232 (321)
+-.+.|+|.-.+|++++ +||+|++|... +. ++ ..++...|+.+.|.|.+..+.+..++
T Consensus 153 VK~V~WHPt~dlL~S~S------YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD 216 (312)
T KOG0645|consen 153 VKHVIWHPTEDLLFSCS------YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDD 216 (312)
T ss_pred ccEEEEcCCcceeEEec------cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCC
Confidence 88899999999999998 79999999874 33 23 44566789999999998776665433
No 37
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=9.4e-15 Score=141.15 Aligned_cols=206 Identities=10% Similarity=0.060 Sum_probs=138.1
Q ss_pred eEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCe
Q 020756 6 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV 85 (321)
Q Consensus 6 ~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v 85 (321)
.|.+++.. +....+.+........+.|||||+.|+++... . |...||.+++.++....+. ...+.+
T Consensus 183 ~l~~~d~d----g~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~----~-----g~~~i~~~dl~~g~~~~l~-~~~g~~ 248 (435)
T PRK05137 183 RLAIMDQD----GANVRYLTDGSSLVLTPRFSPNRQEITYMSYA----N-----GRPRVYLLDLETGQRELVG-NFPGMT 248 (435)
T ss_pred EEEEECCC----CCCcEEEecCCCCeEeeEECCCCCEEEEEEec----C-----CCCEEEEEECCCCcEEEee-cCCCcc
Confidence 45555543 34455566666678899999999999887421 1 2346888888766444443 456778
Q ss_pred EEEEECcCCCEEEEEEc-cCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEE
Q 020756 86 HDVQWSYSGSEFAVVYG-FMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG 162 (321)
Q Consensus 86 ~~~~wsP~g~~l~~~~g-~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~ 162 (321)
..+.|||||+.|++... .....|.++|+.+.....+ +........|+|||+.|++.+..+...+|++||+..++...
T Consensus 249 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~ 328 (435)
T PRK05137 249 FAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR 328 (435)
T ss_pred cCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE
Confidence 89999999999887532 2223688889987766666 33445679999999999988743334589999987764333
Q ss_pred eeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe-ccCceEEEEEecCCCCCCC
Q 020756 163 TTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-MFDKLFQAEWKPVSPDKFG 228 (321)
Q Consensus 163 ~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~-~~~~~~~~~w~P~~~~~~~ 228 (321)
.... .....+.|||||++|+..... ..+..+.+|+.++...... ....+..+.|+|++..++-
T Consensus 329 lt~~~~~~~~~~~SpdG~~ia~~~~~---~~~~~i~~~d~~~~~~~~lt~~~~~~~p~~spDG~~i~~ 393 (435)
T PRK05137 329 ISFGGGRYSTPVWSPRGDLIAFTKQG---GGQFSIGVMKPDGSGERILTSGFLVEGPTWAPNGRVIMF 393 (435)
T ss_pred eecCCCcccCeEECCCCCEEEEEEcC---CCceEEEEEECCCCceEeccCCCCCCCCeECCCCCEEEE
Confidence 2222 245568999999999987731 0124577788765433211 1124567899999887653
No 38
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.8e-15 Score=142.78 Aligned_cols=204 Identities=15% Similarity=0.236 Sum_probs=156.9
Q ss_pred CceEEEEEcCCcCCCCceeeeec-ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756 4 PASVQIYACGKDLQSQPLARRSF-FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE 82 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~-f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~ 82 (321)
-|.|.||++.+ .+.+..... ....+-.+.|+ ..++...+ +. |....+.+........ +...|.
T Consensus 238 ~g~v~iwD~~~---~k~~~~~~~~h~~rvg~laW~---~~~lssGs----r~-----~~I~~~dvR~~~~~~~-~~~~H~ 301 (484)
T KOG0305|consen 238 DGTVQIWDVKE---QKKTRTLRGSHASRVGSLAWN---SSVLSSGS----RD-----GKILNHDVRISQHVVS-TLQGHR 301 (484)
T ss_pred CCeEEEEehhh---ccccccccCCcCceeEEEecc---CceEEEec----CC-----CcEEEEEEecchhhhh-hhhccc
Confidence 57899999998 677888887 78888899999 22333211 11 3333344433332222 234589
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeC-CCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 159 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~ 159 (321)
..|+.++|++|+.+||. |..|..+.|||. ...+++.+ |.+.|..++|+|.-+-|+..|-|..|+.|+|||..+++
T Consensus 302 qeVCgLkws~d~~~lAS--GgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~ 379 (484)
T KOG0305|consen 302 QEVCGLKWSPDGNQLAS--GGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA 379 (484)
T ss_pred ceeeeeEECCCCCeecc--CCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc
Confidence 99999999999999998 788999999999 44566666 89999999999977766666667789999999999999
Q ss_pred EEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-ee--EEeccCceEEEEEecCCCCCCCC
Q 020756 160 QLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LF--FKKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 160 ~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-~l--~~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
++...... .|..+.||+..+-|+++... .++.|.||++... ++ ..+|...|..++|+|++..+++.
T Consensus 380 ~i~~vdtgsQVcsL~Wsk~~kEi~sthG~----s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~ 449 (484)
T KOG0305|consen 380 RIDSVDTGSQVCSLIWSKKYKELLSTHGY----SENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTG 449 (484)
T ss_pred EecccccCCceeeEEEcCCCCEEEEecCC----CCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEe
Confidence 98877664 88999999998777776643 4889999999432 22 66788999999999999888876
No 39
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.67 E-value=1.9e-15 Score=137.63 Aligned_cols=202 Identities=14% Similarity=0.219 Sum_probs=137.8
Q ss_pred CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC--C
Q 020756 4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR--K 81 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~--~ 81 (321)
+...-||.+-.+.--+...+.--....+.-+.||||.+||+.+...+ .+.+++++.+ +...... +
T Consensus 245 D~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e------------~~~lwDv~tg-d~~~~y~~~~ 311 (519)
T KOG0293|consen 245 DSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE------------VLSLWDVDTG-DLRHLYPSGL 311 (519)
T ss_pred CceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH------------heeeccCCcc-hhhhhcccCc
Confidence 45677888876321111233333456777899999999999873221 1566777665 3333333 3
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 158 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~ 158 (321)
...+.+++|.|||..|++ |..|+.+..||++++..... ....+.+++..+||+++++.+ .|..|.+|++++.
T Consensus 312 ~~S~~sc~W~pDg~~~V~--Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~---~d~~i~l~~~e~~ 386 (519)
T KOG0293|consen 312 GFSVSSCAWCPDGFRFVT--GSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVT---VDKKIRLYNREAR 386 (519)
T ss_pred CCCcceeEEccCCceeEe--cCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEe---cccceeeechhhh
Confidence 478999999999999877 78889999999999876666 234588999999999999886 5566666665544
Q ss_pred eEEEeeeC-CCeeeEEEccCC---------------------------------------------CEEEEEEcCCceee
Q 020756 159 KQLGTTRA-ECSVTSEWSPDG---------------------------------------------RYFMTATTAPRLQI 192 (321)
Q Consensus 159 ~~i~~~~~-~~~~~~~wSpdG---------------------------------------------~~l~t~~s~~rl~~ 192 (321)
........ +.+++++.|-|| .++++|+ .
T Consensus 387 ~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGS------E 460 (519)
T KOG0293|consen 387 VDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGS------E 460 (519)
T ss_pred hhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecC------C
Confidence 33322211 234444444444 4455555 5
Q ss_pred cCcEEEEee-cCcee--EEeccCceEEEEEecCCCCCCCC
Q 020756 193 DNGIKIFHH-NGSLF--FKKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 193 d~~v~iw~~-~g~~l--~~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
|..|+|||. +|.++ ..+|...|..++|+|..+..+..
T Consensus 461 D~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~AS 500 (519)
T KOG0293|consen 461 DSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFAS 500 (519)
T ss_pred CceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhc
Confidence 888888887 56666 66788899999999988888765
No 40
>PTZ00421 coronin; Provisional
Probab=99.67 E-value=9.1e-15 Score=142.48 Aligned_cols=139 Identities=20% Similarity=0.321 Sum_probs=110.5
Q ss_pred cCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEeCCCc--------eeEEe--CCcCeeeEEEcCCC-CeEEEEccCCC
Q 020756 79 LRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCR--------PILEL--GSGPYNTVRWNPKG-KFLCLAGFGNL 146 (321)
Q Consensus 79 l~~~~~v~~~~wsP-~g~~l~~~~g~~~~~i~i~d~~~~--------~~~~~--~~~~~~~~~~sPdG-~~l~~~g~~n~ 146 (321)
..|.++|.+++|+| +++.|+++ ..|++|.+||+... ++..+ |...+.++.|+|++ ++|++++ .
T Consensus 72 ~GH~~~V~~v~fsP~d~~~LaSg--S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs---~ 146 (493)
T PTZ00421 72 LGQEGPIIDVAFNPFDPQKLFTA--SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAG---A 146 (493)
T ss_pred eCCCCCEEEEEEcCCCCCEEEEE--eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEe---C
Confidence 46899999999999 78888774 67899999998432 34455 77889999999986 6888888 8
Q ss_pred CCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeEE--eccC-ceEEEEEe
Q 020756 147 PGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK--KMFD-KLFQAEWK 220 (321)
Q Consensus 147 ~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~--~~~~-~~~~~~w~ 220 (321)
|+.|+|||+++++.+..+..| .+.+++|+|||.+|++++ .|+.|+|||+. ++.+.. .|.. ....+.|.
T Consensus 147 DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs------~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~ 220 (493)
T PTZ00421 147 DMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTS------KDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWA 220 (493)
T ss_pred CCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEec------CCCEEEEEECCCCcEEEEEecCCCCcceEEEEc
Confidence 999999999999888888765 688999999999999998 49999999984 555533 3333 23456788
Q ss_pred cCCCCCCC
Q 020756 221 PVSPDKFG 228 (321)
Q Consensus 221 P~~~~~~~ 228 (321)
|+...+++
T Consensus 221 ~~~~~ivt 228 (493)
T PTZ00421 221 KRKDLIIT 228 (493)
T ss_pred CCCCeEEE
Confidence 87666553
No 41
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.1e-14 Score=140.47 Aligned_cols=192 Identities=13% Similarity=0.167 Sum_probs=129.5
Q ss_pred ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756 5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP 84 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~ 84 (321)
..|.+|++.. ++. .....++.....+.|||||+.|++....+ |...||.++..+.....++ .+.+.
T Consensus 228 ~~i~i~dl~t---g~~-~~l~~~~g~~~~~~wSPDG~~La~~~~~~---------g~~~Iy~~d~~~~~~~~lt-~~~~~ 293 (429)
T PRK01742 228 SQLVVHDLRS---GAR-KVVASFRGHNGAPAFSPDGSRLAFASSKD---------GVLNIYVMGANGGTPSQLT-SGAGN 293 (429)
T ss_pred cEEEEEeCCC---Cce-EEEecCCCccCceeECCCCCEEEEEEecC---------CcEEEEEEECCCCCeEeec-cCCCC
Confidence 4688888866 332 22333455556789999999998864211 4456899988766444443 34566
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEEeC--CCceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEE
Q 020756 85 VHDVQWSYSGSEFAVVYGFMPASATIFNK--KCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG 162 (321)
Q Consensus 85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~--~~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~ 162 (321)
+.++.|+|||+.|+++. ..++...||++ .+.....+.... ..+.|||||++|++.+ . ..+.+||+.+++...
T Consensus 294 ~~~~~wSpDG~~i~f~s-~~~g~~~I~~~~~~~~~~~~l~~~~-~~~~~SpDG~~ia~~~---~-~~i~~~Dl~~g~~~~ 367 (429)
T PRK01742 294 NTEPSWSPDGQSILFTS-DRSGSPQVYRMSASGGGASLVGGRG-YSAQISADGKTLVMIN---G-DNVVKQDLTSGSTEV 367 (429)
T ss_pred cCCEEECCCCCEEEEEE-CCCCCceEEEEECCCCCeEEecCCC-CCccCCCCCCEEEEEc---C-CCEEEEECCCCCeEE
Confidence 78999999999988864 34455566654 444333332222 4578999999999986 3 357779998886543
Q ss_pred eeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEe---ecCceeEEe--ccCceEEEEEecC
Q 020756 163 TTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH---HNGSLFFKK--MFDKLFQAEWKPV 222 (321)
Q Consensus 163 ~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~---~~g~~l~~~--~~~~~~~~~w~P~ 222 (321)
.........+.|||||++|++++. ++...+|+ .+|..+... +...+.+++|+|.
T Consensus 368 lt~~~~~~~~~~sPdG~~i~~~s~------~g~~~~l~~~~~~G~~~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 368 LSSTFLDESPSISPNGIMIIYSST------QGLGKVLQLVSADGRFKARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred ecCCCCCCCceECCCCCEEEEEEc------CCCceEEEEEECCCCceEEccCCCCCCCCcccCCC
Confidence 333334456789999999999985 66666665 467766433 4567888999985
No 42
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.66 E-value=9.1e-16 Score=142.97 Aligned_cols=184 Identities=18% Similarity=0.319 Sum_probs=132.5
Q ss_pred ceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee-ec---CCCCCeEEEEECcCCCEEEEEEccCCCe
Q 020756 32 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-PL---RKEGPVHDVQWSYSGSEFAVVYGFMPAS 107 (321)
Q Consensus 32 ~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v-~l---~~~~~v~~~~wsP~g~~l~~~~g~~~~~ 107 (321)
..-.|+|+.....+.++. .|.-.||.++-...+...+ +. .+.-++..|+|+|||..||. |+.||.
T Consensus 272 t~g~whP~~k~~FlT~s~---------DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAa--gc~DGS 340 (641)
T KOG0772|consen 272 TCGCWHPDNKEEFLTCSY---------DGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAA--GCLDGS 340 (641)
T ss_pred eccccccCcccceEEecC---------CCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhh--cccCCc
Confidence 345699988877666532 2444444443222211111 11 13557899999999999887 678999
Q ss_pred EEEEeCCCc---ee---EEeCCc--CeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC-eEEEeeeC----CCeeeEEE
Q 020756 108 ATIFNKKCR---PI---LELGSG--PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRA----ECSVTSEW 174 (321)
Q Consensus 108 i~i~d~~~~---~~---~~~~~~--~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~-~~i~~~~~----~~~~~~~w 174 (321)
|.+|+.... +. ..-|.. .+.+|.||+||++|++-| .|.++++||+++. +++....+ ...+.++|
T Consensus 341 IQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg---~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~F 417 (641)
T KOG0772|consen 341 IQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG---FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCF 417 (641)
T ss_pred eeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc---CCCceeeeeccccccchhhhcCCCccCCCCcccc
Confidence 999997432 22 233544 899999999999999999 8889999999976 45544433 36778999
Q ss_pred ccCCCEEEEEEcCCceeecCcEEEEeec-CceeEEeccC--ceEEEEEecCCCCCCCC
Q 020756 175 SPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKMFD--KLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 175 SpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~~~~~--~~~~~~w~P~~~~~~~~ 229 (321)
|||.++|+|+++.++-...+.+.+||.. -+.+++.... .|..+.|+|.-..|+..
T Consensus 418 SPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~g 475 (641)
T KOG0772|consen 418 SPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAG 475 (641)
T ss_pred CCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeee
Confidence 9999999999999887666778888863 3455665554 78889999988888754
No 43
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.66 E-value=2.1e-14 Score=148.58 Aligned_cols=200 Identities=15% Similarity=0.213 Sum_probs=146.3
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCC-CCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR 80 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp-~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~ 80 (321)
+..+.|+||++.+ ++.+.....+...+..+.|+| +|..|+.. +.| |. +.+++.... .....+.
T Consensus 552 ~~Dg~v~lWd~~~---~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sg-s~D---------g~--v~iWd~~~~-~~~~~~~ 615 (793)
T PLN00181 552 NFEGVVQVWDVAR---SQLVTEMKEHEKRVWSIDYSSADPTLLASG-SDD---------GS--VKLWSINQG-VSIGTIK 615 (793)
T ss_pred eCCCeEEEEECCC---CeEEEEecCCCCCEEEEEEcCCCCCEEEEE-cCC---------CE--EEEEECCCC-cEEEEEe
Confidence 4578999999988 677777777777888999997 56665553 211 22 445555433 2333334
Q ss_pred CCCCeEEEEEC-cCCCEEEEEEccCCCeEEEEeCCCc--eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC
Q 020756 81 KEGPVHDVQWS-YSGSEFAVVYGFMPASATIFNKKCR--PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 155 (321)
Q Consensus 81 ~~~~v~~~~ws-P~g~~l~~~~g~~~~~i~i~d~~~~--~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~ 155 (321)
....|.++.|+ ++|..|++ |..++.|++||++.. .+..+ |...+..+.|+ ++.+|++++ .|+.|.|||+
T Consensus 616 ~~~~v~~v~~~~~~g~~lat--gs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s---~D~~ikiWd~ 689 (793)
T PLN00181 616 TKANICCVQFPSESGRSLAF--GSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSS---TDNTLKLWDL 689 (793)
T ss_pred cCCCeEEEEEeCCCCCEEEE--EeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEE---CCCEEEEEeC
Confidence 45689999995 57888887 567899999999643 34444 67889999997 788999998 8999999999
Q ss_pred CC------CeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-ee--E-------------Eecc
Q 020756 156 VD------GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LF--F-------------KKMF 211 (321)
Q Consensus 156 ~~------~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-~l--~-------------~~~~ 211 (321)
.. ...+..+.+| .+..+.|+|+|.+|++++. |+.++||+.... .+ + ..+.
T Consensus 690 ~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~------D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 763 (793)
T PLN00181 690 SMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSE------TNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDAS 763 (793)
T ss_pred CCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeC------CCEEEEEECCCCCceEEEecccCCcccccccCCCC
Confidence 74 3567777776 5677999999999999994 999999997422 11 1 1122
Q ss_pred CceEEEEEecCCCCCCCC
Q 020756 212 DKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 212 ~~~~~~~w~P~~~~~~~~ 229 (321)
..+.++.|+|+...+++.
T Consensus 764 ~~V~~v~ws~~~~~lva~ 781 (793)
T PLN00181 764 QFISSVCWRGQSSTLVAA 781 (793)
T ss_pred cEEEEEEEcCCCCeEEEe
Confidence 358999999998877764
No 44
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=2.3e-14 Score=138.40 Aligned_cols=204 Identities=13% Similarity=0.155 Sum_probs=135.6
Q ss_pred ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756 5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP 84 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~ 84 (321)
..|.+|++.. ++ ..+.+.++.......|||||+.|++..+.+ |...||.++..+....++. .+.+.
T Consensus 226 ~~i~~~dl~~---g~-~~~l~~~~g~~~~~~~SPDG~~la~~~~~~---------g~~~Iy~~d~~~~~~~~Lt-~~~~~ 291 (435)
T PRK05137 226 PRVYLLDLET---GQ-RELVGNFPGMTFAPRFSPDGRKVVMSLSQG---------GNTDIYTMDLRSGTTTRLT-DSPAI 291 (435)
T ss_pred CEEEEEECCC---Cc-EEEeecCCCcccCcEECCCCCEEEEEEecC---------CCceEEEEECCCCceEEcc-CCCCc
Confidence 5788888866 33 344555666677889999999998864321 3456899998776544443 34455
Q ss_pred eEEEEECcCCCEEEEEEcc-CCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEE
Q 020756 85 VHDVQWSYSGSEFAVVYGF-MPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL 161 (321)
Q Consensus 85 v~~~~wsP~g~~l~~~~g~-~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i 161 (321)
.....|+|||+.|++.... ....|.++|+.+.....+ +......+.|||||+.|++.........|.+||+..+...
T Consensus 292 ~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~ 371 (435)
T PRK05137 292 DTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER 371 (435)
T ss_pred cCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE
Confidence 6789999999999987532 123788889877655555 4455677899999999999874333457899998655332
Q ss_pred EeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe-ccCceEEEEEecC
Q 020756 162 GTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-MFDKLFQAEWKPV 222 (321)
Q Consensus 162 ~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~-~~~~~~~~~w~P~ 222 (321)
.......+..+.|||||++|+..+..........+.+++++|...... ....+...+|+|.
T Consensus 372 ~lt~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~~~~~~~~p~Wsp~ 433 (435)
T PRK05137 372 ILTSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVPTPGDASDPAWSPL 433 (435)
T ss_pred eccCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEccCCCCccCcccCCC
Confidence 222223556789999999999877521100013577778877654322 2234667788774
No 45
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.65 E-value=7.7e-15 Score=141.73 Aligned_cols=208 Identities=13% Similarity=0.116 Sum_probs=162.2
Q ss_pred CCCceEEEEEcCCcC-CCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee--
Q 020756 2 GSPASVQIYACGKDL-QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-- 78 (321)
Q Consensus 2 g~p~~v~v~~~~~~~-~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~-- 78 (321)
+.+-+|+||.+.+.. ..-++++.+-+......+..+..|--+++.++.| +...+|.+.........+.
T Consensus 384 sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D---------~tlK~W~l~~s~~~~~~~~~~ 454 (775)
T KOG0319|consen 384 SKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQD---------CTLKLWDLPKSKETAFPIVLT 454 (775)
T ss_pred cCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCC---------ceEEEecCCCcccccccceeh
Confidence 467799999995421 1235677777777888888899888888876543 2222333322111111222
Q ss_pred -----cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcE
Q 020756 79 -----LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDM 150 (321)
Q Consensus 79 -----l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i 150 (321)
..|+..|++++.+|+.+.||+ |.+|.+++||++.. ....++ |...+.++.|+|..+.|++++ .|.+|
T Consensus 455 ~~~t~~aHdKdIN~Vaia~ndkLiAT--~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~S---gD~Tv 529 (775)
T KOG0319|consen 455 CRYTERAHDKDINCVAIAPNDKLIAT--GSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCS---GDKTV 529 (775)
T ss_pred hhHHHHhhcccccceEecCCCceEEe--cccccceeeecccCceEEEEeeCCccceEEEEeccccceeEecc---CCceE
Confidence 247889999999999999999 58899999999963 344455 888999999999999999999 99999
Q ss_pred EEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC-cee--EEeccCceEEEEEecCCCC
Q 020756 151 AFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLF--FKKMFDKLFQAEWKPVSPD 225 (321)
Q Consensus 151 ~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g-~~l--~~~~~~~~~~~~w~P~~~~ 225 (321)
+||.+.++.|+.++++| .+..+.|-.+|..|+++++ |+-++||++.. +++ +-.|.+.||.++-+|....
T Consensus 530 KIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~a------dGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~ 603 (775)
T KOG0319|consen 530 KIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGA------DGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDM 603 (775)
T ss_pred EEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccC------CCcEEEEeccchhhhhhhhhccceeEEEeecCccce
Confidence 99999999999999988 5778999999999999996 99999999954 444 5578899999999998886
Q ss_pred CCCC
Q 020756 226 KFGD 229 (321)
Q Consensus 226 ~~~~ 229 (321)
+++.
T Consensus 604 ~~tg 607 (775)
T KOG0319|consen 604 FVTG 607 (775)
T ss_pred eEec
Confidence 6654
No 46
>PTZ00420 coronin; Provisional
Probab=99.65 E-value=6.5e-14 Score=137.75 Aligned_cols=203 Identities=11% Similarity=0.210 Sum_probs=135.8
Q ss_pred CCCceEEEEEcCCcCC-----CCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee
Q 020756 2 GSPASVQIYACGKDLQ-----SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL 76 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~-----~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~ 76 (321)
|..+.|+||+++.... ..++.....+...+..+.|+|++..+++.++.| +. |.++++... ...
T Consensus 94 S~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~D---------gt--IrIWDl~tg-~~~ 161 (568)
T PTZ00420 94 SEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFD---------SF--VNIWDIENE-KRA 161 (568)
T ss_pred eCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCC---------Ce--EEEEECCCC-cEE
Confidence 5688999999987210 013334445566788999999999887654322 22 455555444 233
Q ss_pred eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeee-----EEEcCCCCeEEEEccCC-CC
Q 020756 77 VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNT-----VRWNPKGKFLCLAGFGN-LP 147 (321)
Q Consensus 77 v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~-----~~~sPdG~~l~~~g~~n-~~ 147 (321)
..+.+...|.+++|+|+|..|++. +.++.+.|||++.. .+.++ |.+.+.. ..|++++.+|+++|+.. .+
T Consensus 162 ~~i~~~~~V~SlswspdG~lLat~--s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~ 239 (568)
T PTZ00420 162 FQINMPKKLSSLKWNIKGNLLSGT--CVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNM 239 (568)
T ss_pred EEEecCCcEEEEEECCCCCEEEEE--ecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCc
Confidence 444567889999999999998874 56889999999654 55555 5554433 34569999999998543 23
Q ss_pred CcEEEEECCC-CeEEEeeeCC---CeeeEEEcc-CCCEEEEEEcCCceeecCcEEEEeecCceeEEe----ccCceEEEE
Q 020756 148 GDMAFWDYVD-GKQLGTTRAE---CSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK----MFDKLFQAE 218 (321)
Q Consensus 148 g~i~iwD~~~-~~~i~~~~~~---~~~~~~wSp-dG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~----~~~~~~~~~ 218 (321)
++|.|||+++ .+.+.....+ .+....|.+ +|.++++|. .|+.+++|++....++.. +......+.
T Consensus 240 R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGk------GD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~ 313 (568)
T PTZ00420 240 REMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGK------GDGNCRYYQHSLGSIRKVNEYKSCSPFRSFG 313 (568)
T ss_pred cEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEE------CCCeEEEEEccCCcEEeecccccCCCccceE
Confidence 5899999985 4556554433 233345545 588888887 499999999954433221 223566788
Q ss_pred EecCCC
Q 020756 219 WKPVSP 224 (321)
Q Consensus 219 w~P~~~ 224 (321)
|.|...
T Consensus 314 f~Pkr~ 319 (568)
T PTZ00420 314 FLPKQI 319 (568)
T ss_pred Eccccc
Confidence 888654
No 47
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.65 E-value=9.4e-15 Score=128.39 Aligned_cols=189 Identities=13% Similarity=0.167 Sum_probs=152.3
Q ss_pred CceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCcee-eeecCCCCCeEEEEECcCCCEE
Q 020756 19 QPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPLRKEGPVHDVQWSYSGSEF 97 (321)
Q Consensus 19 ~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~-~v~l~~~~~v~~~~wsP~g~~l 97 (321)
.++-++.-.++.+..+.|+|+|+.++... -...++++++.|.-+- .+.-.|.++|.++.|.+|++.+
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG------------~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i 105 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGG------------SDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHI 105 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecC------------CcceEEEEeccccccceeeeccccceeEeeeeccCCCEE
Confidence 45556666788999999999999987631 1234777777765332 2333589999999999999999
Q ss_pred EEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-CeeeEE
Q 020756 98 AVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSE 173 (321)
Q Consensus 98 ~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-~~~~~~ 173 (321)
+.+ ..|.++..||.. ++.++.+ |..-+|.+.-+--|..|+.++ ..|+++++||+++...+.+++.. .++.+.
T Consensus 106 ~S~--gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~Sg--sdD~t~kl~D~R~k~~~~t~~~kyqltAv~ 181 (338)
T KOG0265|consen 106 LSC--GTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSG--SDDGTLKLWDIRKKEAIKTFENKYQLTAVG 181 (338)
T ss_pred EEe--cCCceEEEEecccceeeehhccccceeeecCccccCCeEEEec--CCCceEEEEeecccchhhccccceeEEEEE
Confidence 997 458899999995 4455555 777888888565677777665 47899999999999999988765 789999
Q ss_pred EccCCCEEEEEEcCCceeecCcEEEEee---cCceeEEeccCceEEEEEecCCCCCCCC
Q 020756 174 WSPDGRYFMTATTAPRLQIDNGIKIFHH---NGSLFFKKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 174 wSpdG~~l~t~~s~~rl~~d~~v~iw~~---~g~~l~~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
|.-++.-+.+++ .||.|++||+ .+..+..+|.+.|..+.-+|.+..+++.
T Consensus 182 f~d~s~qv~sgg------Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsn 234 (338)
T KOG0265|consen 182 FKDTSDQVISGG------IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSN 234 (338)
T ss_pred ecccccceeecc------ccCceeeeccccCcceEEeecccCceeeEEeccCCCccccc
Confidence 999999999999 6999999999 4555688899999999999999988876
No 48
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=4.6e-14 Score=136.08 Aligned_cols=208 Identities=11% Similarity=0.010 Sum_probs=133.6
Q ss_pred ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756 5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP 84 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~ 84 (321)
..|.|+++.. ....+.+........+.|||||+.|+++.. .. +...||+++..++....+. ...+.
T Consensus 179 ~~l~~~d~dg----~~~~~lt~~~~~~~~p~wSPDG~~la~~s~----~~-----g~~~i~i~dl~~G~~~~l~-~~~~~ 244 (429)
T PRK03629 179 YELRVSDYDG----YNQFVVHRSPQPLMSPAWSPDGSKLAYVTF----ES-----GRSALVIQTLANGAVRQVA-SFPRH 244 (429)
T ss_pred eeEEEEcCCC----CCCEEeecCCCceeeeEEcCCCCEEEEEEe----cC-----CCcEEEEEECCCCCeEEcc-CCCCC
Confidence 3555555543 223334445556778999999999998642 11 3345888887765433332 33455
Q ss_pred eEEEEECcCCCEEEEEEc-cCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEE
Q 020756 85 VHDVQWSYSGSEFAVVYG-FMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL 161 (321)
Q Consensus 85 v~~~~wsP~g~~l~~~~g-~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i 161 (321)
+.++.|||||+.|+++.. .....|.+||+++..+..+ +......+.|+|||+.|++++.......|+++|+.+++..
T Consensus 245 ~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~ 324 (429)
T PRK03629 245 NGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ 324 (429)
T ss_pred cCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE
Confidence 678999999999998632 2223688999977656555 3445678999999999998773222236777788776433
Q ss_pred Ee-eeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEec-cCceEEEEEecCCCCCCCC
Q 020756 162 GT-TRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKM-FDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 162 ~~-~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~-~~~~~~~~w~P~~~~~~~~ 229 (321)
.. ........+.|||||++|++..... ....+.+||+.+..+.... ........|+|++..++-.
T Consensus 325 ~lt~~~~~~~~~~~SpDG~~Ia~~~~~~---g~~~I~~~dl~~g~~~~Lt~~~~~~~p~~SpDG~~i~~~ 391 (429)
T PRK03629 325 RITWEGSQNQDADVSSDGKFMVMVSSNG---GQQHIAKQDLATGGVQVLTDTFLDETPSIAPNGTMVIYS 391 (429)
T ss_pred EeecCCCCccCEEECCCCCEEEEEEccC---CCceEEEEECCCCCeEEeCCCCCCCCceECCCCCEEEEE
Confidence 22 2223456789999999999877420 1235778888554332221 1223468899999877754
No 49
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=3.1e-14 Score=137.46 Aligned_cols=199 Identities=12% Similarity=0.129 Sum_probs=131.9
Q ss_pred ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756 5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP 84 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~ 84 (321)
..|.+|++.. ++ ....+.++.....+.|||||+.|++..+.+ |...||.++..++...++. .+.+.
T Consensus 228 ~~l~~~dl~~---g~-~~~l~~~~g~~~~~~~SpDG~~l~~~~s~~---------g~~~Iy~~d~~~g~~~~lt-~~~~~ 293 (433)
T PRK04922 228 SAIYVQDLAT---GQ-RELVASFRGINGAPSFSPDGRRLALTLSRD---------GNPEIYVMDLGSRQLTRLT-NHFGI 293 (433)
T ss_pred cEEEEEECCC---CC-EEEeccCCCCccCceECCCCCEEEEEEeCC---------CCceEEEEECCCCCeEECc-cCCCC
Confidence 4577778765 33 233444555556789999999998864321 3456899988776444433 23345
Q ss_pred eEEEEECcCCCEEEEEEccCCC--eEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE
Q 020756 85 VHDVQWSYSGSEFAVVYGFMPA--SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ 160 (321)
Q Consensus 85 v~~~~wsP~g~~l~~~~g~~~~--~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~ 160 (321)
...++|+|||++|++... ..+ .+.++|+.+.....+ +......+.|||||++|++....+....|++||+.+++.
T Consensus 294 ~~~~~~spDG~~l~f~sd-~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 294 DTEPTWAPDGKSIYFTSD-RGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred ccceEECCCCCEEEEEEC-CCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence 568999999999998743 233 577778765544433 333445789999999999876322234799999988765
Q ss_pred EEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe--ccCceEEEEEec
Q 020756 161 LGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MFDKLFQAEWKP 221 (321)
Q Consensus 161 i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~--~~~~~~~~~w~P 221 (321)
...........+.|||||++|+..+.. .....+.+++.+|...... ....+...+|+|
T Consensus 373 ~~Lt~~~~~~~p~~spdG~~i~~~s~~---~g~~~L~~~~~~g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 373 RTLTPGSLDESPSFAPNGSMVLYATRE---GGRGVLAAVSTDGRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred EECCCCCCCCCceECCCCCEEEEEEec---CCceEEEEEECCCCceEEcccCCCCCCCCccCC
Confidence 433333344567999999999988852 1134577888888765333 335677788887
No 50
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.64 E-value=2.7e-15 Score=139.86 Aligned_cols=202 Identities=15% Similarity=0.221 Sum_probs=132.0
Q ss_pred CCceEEEEEcCCcCCCCce-eeeeccc---CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-----
Q 020756 3 SPASVQIYACGKDLQSQPL-ARRSFFR---CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH----- 73 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~~i-~~~~~f~---~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~----- 73 (321)
.+-.|++|++.-.. ... +-+.+-. ..+..+.||+.|..||++. |.....+++.+|-.
T Consensus 187 ~Dy~v~~wDf~gMd--as~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvs------------g~aqakl~DRdG~~~~e~~ 252 (641)
T KOG0772|consen 187 LDYTVKFWDFQGMD--ASMRSFRQLQPCETHQINSLQYSVTGDQILVVS------------GSAQAKLLDRDGFEIVEFS 252 (641)
T ss_pred ccceEEEEeccccc--ccchhhhccCcccccccceeeecCCCCeEEEEe------------cCcceeEEccCCceeeeee
Confidence 44568899987532 111 1111111 2345789999999999874 22223333333321
Q ss_pred ---eeee----ecCCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeCCC--ceeEEe-------CCcCeeeEEEcCCCC
Q 020756 74 ---EGLV----PLRKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKC--RPILEL-------GSGPYNTVRWNPKGK 136 (321)
Q Consensus 74 ---~~~v----~l~~~~~v~~~~wsP~g~-~l~~~~g~~~~~i~i~d~~~--~~~~~~-------~~~~~~~~~~sPdG~ 136 (321)
..++ +-.|-..+++.+|+|+.+ .|+++ ..|++++|||+.. .+...| ..-++.++.|+|||.
T Consensus 253 KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~--s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~ 330 (641)
T KOG0772|consen 253 KGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTC--SYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK 330 (641)
T ss_pred ccchhhhhhhccCCceeeeeccccccCcccceEEe--cCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc
Confidence 1111 123667789999999877 45554 4589999999842 223222 234678899999999
Q ss_pred eEEEEccCCCCCcEEEEECCCCe---EEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC--ceeE
Q 020756 137 FLCLAGFGNLPGDMAFWDYVDGK---QLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG--SLFF 207 (321)
Q Consensus 137 ~l~~~g~~n~~g~i~iwD~~~~~---~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g--~~l~ 207 (321)
.|+.+. .||.|.+||..+.. .+..-.+| .++++.||+||++|++-+ .|+.+++||+.. +.|+
T Consensus 331 ~iAagc---~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg------~D~tLKvWDLrq~kkpL~ 401 (641)
T KOG0772|consen 331 LIAAGC---LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRG------FDDTLKVWDLRQFKKPLN 401 (641)
T ss_pred hhhhcc---cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhcc------CCCceeeeeccccccchh
Confidence 999998 99999999975441 12222222 799999999999999988 499999999942 3331
Q ss_pred --Ee--ccCceEEEEEecCCCCCCCC
Q 020756 208 --KK--MFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 208 --~~--~~~~~~~~~w~P~~~~~~~~ 229 (321)
.+ ..-.-.++.|+|+...|++.
T Consensus 402 ~~tgL~t~~~~tdc~FSPd~kli~TG 427 (641)
T KOG0772|consen 402 VRTGLPTPFPGTDCCFSPDDKLILTG 427 (641)
T ss_pred hhcCCCccCCCCccccCCCceEEEec
Confidence 11 12244578999998877754
No 51
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=9.7e-15 Score=139.11 Aligned_cols=179 Identities=15% Similarity=0.184 Sum_probs=138.0
Q ss_pred CCceEEEEEcCCcCCCCceee-eecccCccceEEeCCCCCeeEEEEEecccCCCceeeccee-EEEEEcCCCceeeeecC
Q 020756 3 SPASVQIYACGKDLQSQPLAR-RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESK-LNYLTTDGTHEGLVPLR 80 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~~i~~-~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~-l~~l~~~g~~~~~v~l~ 80 (321)
..+.|..++++. .+.+.. ...+..++|.++|++||.+++.- |.++ +++++.........-..
T Consensus 278 r~~~I~~~dvR~---~~~~~~~~~~H~qeVCgLkws~d~~~lASG-------------gnDN~~~Iwd~~~~~p~~~~~~ 341 (484)
T KOG0305|consen 278 RDGKILNHDVRI---SQHVVSTLQGHRQEVCGLKWSPDGNQLASG-------------GNDNVVFIWDGLSPEPKFTFTE 341 (484)
T ss_pred CCCcEEEEEEec---chhhhhhhhcccceeeeeEECCCCCeeccC-------------CCccceEeccCCCccccEEEec
Confidence 456788889988 444433 66678999999999999999763 2222 34444433322233345
Q ss_pred CCCCeEEEEECcC-CCEEEEEEccCCCeEEEEeCC-CceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756 81 KEGPVHDVQWSYS-GSEFAVVYGFMPASATIFNKK-CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 157 (321)
Q Consensus 81 ~~~~v~~~~wsP~-g~~l~~~~g~~~~~i~i~d~~-~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~ 157 (321)
|...|..++|+|- ...||+..|..|+.|++||.. +..+..+ ....|..+.|+|..+.|+++. |..+..|.||++.+
T Consensus 342 H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sth-G~s~n~i~lw~~ps 420 (484)
T KOG0305|consen 342 HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTH-GYSENQITLWKYPS 420 (484)
T ss_pred cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEec-CCCCCcEEEEeccc
Confidence 8999999999995 557777767889999999985 4566666 467899999999998777752 34567999999999
Q ss_pred CeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc
Q 020756 158 GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 204 (321)
Q Consensus 158 ~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~ 204 (321)
.+.+..+.+| -+..++|||||.+|++++. |.++++|++-+.
T Consensus 421 ~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~------DETlrfw~~f~~ 463 (484)
T KOG0305|consen 421 MKLVAELLGHTSRVLYLALSPDGETIVTGAA------DETLRFWNLFDE 463 (484)
T ss_pred cceeeeecCCcceeEEEEECCCCCEEEEecc------cCcEEeccccCC
Confidence 9999999888 6888999999999999995 999999998654
No 52
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.63 E-value=3.6e-14 Score=124.38 Aligned_cols=171 Identities=15% Similarity=0.193 Sum_probs=138.2
Q ss_pred CceEEEEEcCCcCCCCceeeeecccCccceEEeCC-CCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756 4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE 82 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp-~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~ 82 (321)
+....+|+|++ ++.+....-+..|+..+..+| +++.++... .|++ -+++++....-.+....|+
T Consensus 165 D~TCalWDie~---g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~---cD~~---------aklWD~R~~~c~qtF~ghe 229 (343)
T KOG0286|consen 165 DMTCALWDIET---GQQTQVFHGHTGDVMSLSLSPSDGNTFVSGG---CDKS---------AKLWDVRSGQCVQTFEGHE 229 (343)
T ss_pred CceEEEEEccc---ceEEEEecCCcccEEEEecCCCCCCeEEecc---cccc---------eeeeeccCcceeEeecccc
Confidence 45788999999 888888888899999999999 666655431 2221 2344544443344445699
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe----CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 157 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~----~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~ 157 (321)
..|+++.|.|+|.-|++ |..|++.++||++.. .+..+ -..++++++||-.|++|+.+. .|.++.+||.-.
T Consensus 230 sDINsv~ffP~G~afat--GSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy---~d~~c~vWDtlk 304 (343)
T KOG0286|consen 230 SDINSVRFFPSGDAFAT--GSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY---DDFTCNVWDTLK 304 (343)
T ss_pred cccceEEEccCCCeeee--cCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee---cCCceeEeeccc
Confidence 99999999999988888 788999999999765 44444 256889999999999999886 789999999999
Q ss_pred CeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEe
Q 020756 158 GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 200 (321)
Q Consensus 158 ~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~ 200 (321)
++.+..+.+| .++++..+|||--+++++ =|..++||.
T Consensus 305 ~e~vg~L~GHeNRvScl~~s~DG~av~TgS------WDs~lriW~ 343 (343)
T KOG0286|consen 305 GERVGVLAGHENRVSCLGVSPDGMAVATGS------WDSTLRIWA 343 (343)
T ss_pred cceEEEeeccCCeeEEEEECCCCcEEEecc------hhHheeecC
Confidence 9999999888 699999999999998888 499999994
No 53
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=5.5e-14 Score=135.72 Aligned_cols=206 Identities=13% Similarity=0.066 Sum_probs=133.1
Q ss_pred eEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCe
Q 020756 6 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV 85 (321)
Q Consensus 6 ~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v 85 (321)
.|.||+... ....+.+..+.....+.|+|||+.|+++... . +...||.++..++....+. ...+..
T Consensus 185 ~l~i~D~~g----~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~----~-----~~~~l~~~dl~~g~~~~l~-~~~g~~ 250 (433)
T PRK04922 185 ALQVADSDG----YNPQTILRSAEPILSPAWSPDGKKLAYVSFE----R-----GRSAIYVQDLATGQRELVA-SFRGIN 250 (433)
T ss_pred EEEEECCCC----CCceEeecCCCccccccCCCCCCEEEEEecC----C-----CCcEEEEEECCCCCEEEec-cCCCCc
Confidence 455666533 3344455555667889999999999986321 1 2345888888766443333 334556
Q ss_pred EEEEECcCCCEEEEEEc-cCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEE
Q 020756 86 HDVQWSYSGSEFAVVYG-FMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG 162 (321)
Q Consensus 86 ~~~~wsP~g~~l~~~~g-~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~ 162 (321)
..+.|||||+.+++... .....|.+||+.+..+..+ +......+.|+|||++|++++.......|+++|+.+++...
T Consensus 251 ~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~ 330 (433)
T PRK04922 251 GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER 330 (433)
T ss_pred cCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence 68999999999887532 2234799999977666665 33344578999999999988632222358888887764322
Q ss_pred e-eeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe-ccCceEEEEEecCCCCCCC
Q 020756 163 T-TRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-MFDKLFQAEWKPVSPDKFG 228 (321)
Q Consensus 163 ~-~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~-~~~~~~~~~w~P~~~~~~~ 228 (321)
. +.......++|||||++|+..+... .+..+.+|++.+..+... +........|+|++..++-
T Consensus 331 lt~~g~~~~~~~~SpDG~~Ia~~~~~~---~~~~I~v~d~~~g~~~~Lt~~~~~~~p~~spdG~~i~~ 395 (433)
T PRK04922 331 LTFQGNYNARASVSPDGKKIAMVHGSG---GQYRIAVMDLSTGSVRTLTPGSLDESPSFAPNGSMVLY 395 (433)
T ss_pred eecCCCCccCEEECCCCCEEEEEECCC---CceeEEEEECCCCCeEECCCCCCCCCceECCCCCEEEE
Confidence 2 2333455689999999999876310 123588899855433221 2223446799999887653
No 54
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.63 E-value=1.6e-14 Score=127.02 Aligned_cols=202 Identities=12% Similarity=0.248 Sum_probs=150.7
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK 81 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~ 81 (321)
|.+-+|+.|++.+ ++.+........-+..+.=+.-|..|+...+. | |+-.||.+. . .+....+..
T Consensus 109 gtDk~v~~wD~~t---G~~~rk~k~h~~~vNs~~p~rrg~~lv~Sgsd--D-------~t~kl~D~R--~-k~~~~t~~~ 173 (338)
T KOG0265|consen 109 GTDKTVRGWDAET---GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSD--D-------GTLKLWDIR--K-KEAIKTFEN 173 (338)
T ss_pred cCCceEEEEeccc---ceeeehhccccceeeecCccccCCeEEEecCC--C-------ceEEEEeec--c-cchhhcccc
Confidence 5677899999999 77776666554444444433344444443221 1 333344432 2 234444455
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 158 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~ 158 (321)
+..++++.|..++.++.. |.-|+.|++||++. +....+ |...|..+.-+|+|.++++-+ +|.++.+||++-.
T Consensus 174 kyqltAv~f~d~s~qv~s--ggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsns---Md~tvrvwd~rp~ 248 (338)
T KOG0265|consen 174 KYQLTAVGFKDTSDQVIS--GGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNS---MDNTVRVWDVRPF 248 (338)
T ss_pred ceeEEEEEecccccceee--ccccCceeeeccccCcceEEeecccCceeeEEeccCCCcccccc---ccceEEEEEeccc
Confidence 778999999999999877 68889999999954 344444 788999999999999999998 9999999998843
Q ss_pred ----eEEEeeeCC------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-ee--EEeccCceEEEEEecCCCC
Q 020756 159 ----KQLGTTRAE------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LF--FKKMFDKLFQAEWKPVSPD 225 (321)
Q Consensus 159 ----~~i~~~~~~------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-~l--~~~~~~~~~~~~w~P~~~~ 225 (321)
+++..+.++ +...++|||+++++.+++ .|..+++||...+ .+ ..+|...|..+.|+|..+.
T Consensus 249 ~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags------~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~i 322 (338)
T KOG0265|consen 249 APSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGS------ADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPI 322 (338)
T ss_pred CCCCceEEEeecchhhhhhhcceeeccCCCCcccccc------ccceEEEeecccccEEEEcCCcceeEEEeeecCCCcE
Confidence 568877764 455689999999998888 4999999999774 44 4468889999999999988
Q ss_pred CCCC
Q 020756 226 KFGD 229 (321)
Q Consensus 226 ~~~~ 229 (321)
+++.
T Consensus 323 ils~ 326 (338)
T KOG0265|consen 323 ILSC 326 (338)
T ss_pred EEEe
Confidence 8765
No 55
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.63 E-value=8.7e-14 Score=134.10 Aligned_cols=197 Identities=13% Similarity=0.076 Sum_probs=125.5
Q ss_pred CceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEE
Q 020756 19 QPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFA 98 (321)
Q Consensus 19 ~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~ 98 (321)
....+..........+.|||||+.|+++... . +...||++++.++....+. ...+.+..+.|||||+.|+
T Consensus 186 ~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~----~-----~~~~I~~~dl~~g~~~~l~-~~~g~~~~~~~SPDG~~la 255 (427)
T PRK02889 186 QNAQSALSSPEPIISPAWSPDGTKLAYVSFE----S-----KKPVVYVHDLATGRRRVVA-NFKGSNSAPAWSPDGRTLA 255 (427)
T ss_pred CCceEeccCCCCcccceEcCCCCEEEEEEcc----C-----CCcEEEEEECCCCCEEEee-cCCCCccceEECCCCCEEE
Confidence 4444445556667789999999999886421 1 2345888888766444443 2446677899999999998
Q ss_pred EEEccCCC--eEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEE-eeeCCCeeeEE
Q 020756 99 VVYGFMPA--SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG-TTRAECSVTSE 173 (321)
Q Consensus 99 ~~~g~~~~--~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~-~~~~~~~~~~~ 173 (321)
+... .++ .|.++|+.+.....+ +......+.|||||+.|++.+.......|+++|+.+++... ++.........
T Consensus 256 ~~~~-~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~ 334 (427)
T PRK02889 256 VALS-RDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPR 334 (427)
T ss_pred EEEc-cCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceE
Confidence 7532 234 566667766655555 33445678999999999987622112345555665553222 23333445689
Q ss_pred EccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe-ccCceEEEEEecCCCCCCCC
Q 020756 174 WSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-MFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 174 wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~-~~~~~~~~~w~P~~~~~~~~ 229 (321)
|||||++|+..+... .+..+.+||+.+...... .........|+|++..++-.
T Consensus 335 ~SpDG~~Ia~~s~~~---g~~~I~v~d~~~g~~~~lt~~~~~~~p~~spdg~~l~~~ 388 (427)
T PRK02889 335 ISPDGKLLAYISRVG---GAFKLYVQDLATGQVTALTDTTRDESPSFAPNGRYILYA 388 (427)
T ss_pred ECCCCCEEEEEEccC---CcEEEEEEECCCCCeEEccCCCCccCceECCCCCEEEEE
Confidence 999999999877411 123588999865433221 11233568999999877644
No 56
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.63 E-value=1.1e-14 Score=145.93 Aligned_cols=139 Identities=21% Similarity=0.368 Sum_probs=116.0
Q ss_pred CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-------------------ceeEEe--CCcCeeeEEEcCCCCeE
Q 020756 80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-------------------RPILEL--GSGPYNTVRWNPKGKFL 138 (321)
Q Consensus 80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-------------------~~~~~~--~~~~~~~~~~sPdG~~l 138 (321)
+|.+.|+++.|+|||++||+ |..|..+.||+... +.+..+ |...|..+.|+|++.+|
T Consensus 67 ~h~~sv~CVR~S~dG~~lAs--GSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~l 144 (942)
T KOG0973|consen 67 DHDGSVNCVRFSPDGSYLAS--GSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLL 144 (942)
T ss_pred cccCceeEEEECCCCCeEee--ccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEE
Confidence 58999999999999999999 78888999998751 122233 78899999999999999
Q ss_pred EEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee-EE--ecc--
Q 020756 139 CLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF-FK--KMF-- 211 (321)
Q Consensus 139 ~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l-~~--~~~-- 211 (321)
++++ .|+.|.|||..+++++..+.+| -+-.+.|.|-|+|||+-+. |..++||....-.+ +. +++
T Consensus 145 vS~s---~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsd------Drtikvwrt~dw~i~k~It~pf~~ 215 (942)
T KOG0973|consen 145 VSVS---LDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSD------DRTLKVWRTSDWGIEKSITKPFEE 215 (942)
T ss_pred EEec---ccceEEEEccccceeeeeeecccccccceEECCccCeeeeecC------CceEEEEEcccceeeEeeccchhh
Confidence 9999 9999999999999999999988 5677999999999999995 99999999643222 11 122
Q ss_pred ----CceEEEEEecCCCCCCCC
Q 020756 212 ----DKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 212 ----~~~~~~~w~P~~~~~~~~ 229 (321)
..++-++|+||+..+.+.
T Consensus 216 ~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 216 SPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred CCCcceeeecccCCCcCeecch
Confidence 257889999999988865
No 57
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=4.1e-14 Score=136.46 Aligned_cols=198 Identities=12% Similarity=0.097 Sum_probs=126.6
Q ss_pred ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756 5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP 84 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~ 84 (321)
..|.||++.. . .....+........+.|||||+.|+++... . +...||.+++.++....+. ...+.
T Consensus 184 ~~i~i~d~dg---~-~~~~lt~~~~~v~~p~wSPDG~~la~~s~~----~-----~~~~i~i~dl~tg~~~~l~-~~~g~ 249 (429)
T PRK01742 184 YEVRVADYDG---F-NQFIVNRSSQPLMSPAWSPDGSKLAYVSFE----N-----KKSQLVVHDLRSGARKVVA-SFRGH 249 (429)
T ss_pred EEEEEECCCC---C-CceEeccCCCccccceEcCCCCEEEEEEec----C-----CCcEEEEEeCCCCceEEEe-cCCCc
Confidence 5677777654 2 233344445567889999999999886321 0 2335888888665333332 23445
Q ss_pred eEEEEECcCCCEEEEEEccCCC--eEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC--CC
Q 020756 85 VHDVQWSYSGSEFAVVYGFMPA--SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV--DG 158 (321)
Q Consensus 85 v~~~~wsP~g~~l~~~~g~~~~--~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~--~~ 158 (321)
...++|||||+.|+++.. .++ .|.++|+.+.....+ +......+.|+|||+.|++++. .++...||+++ .+
T Consensus 250 ~~~~~wSPDG~~La~~~~-~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~--~~g~~~I~~~~~~~~ 326 (429)
T PRK01742 250 NGAPAFSPDGSRLAFASS-KDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSD--RSGSPQVYRMSASGG 326 (429)
T ss_pred cCceeECCCCCEEEEEEe-cCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEEC--CCCCceEEEEECCCC
Confidence 668999999999998642 344 455667766655555 4556778999999999988762 34556666543 33
Q ss_pred eEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-ee-EEeccCceEEEEEecCCCCCCCC
Q 020756 159 KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LF-FKKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 159 ~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-~l-~~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
.. ..+.... ..+.|||||++|++.+ ...+.+||+.+. .. .... .....+.|+|++..++..
T Consensus 327 ~~-~~l~~~~-~~~~~SpDG~~ia~~~-------~~~i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~ 389 (429)
T PRK01742 327 GA-SLVGGRG-YSAQISADGKTLVMIN-------GDNVVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYS 389 (429)
T ss_pred Ce-EEecCCC-CCccCCCCCCEEEEEc-------CCCEEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEE
Confidence 22 2222222 4578999999999887 345677898543 22 1112 133567899999877754
No 58
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.62 E-value=4.9e-14 Score=121.87 Aligned_cols=203 Identities=19% Similarity=0.274 Sum_probs=148.2
Q ss_pred CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC
Q 020756 4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG 83 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~ 83 (321)
...|+||++..+.-...... .-+..++-++.|.|...-+++.++ |...+-+++.... .+...+...+
T Consensus 41 dktv~v~n~e~~r~~~~~~~-~gh~~svdql~w~~~~~d~~atas-----------~dk~ir~wd~r~~-k~~~~i~~~~ 107 (313)
T KOG1407|consen 41 DKTVSVWNLERDRFRKELVY-RGHTDSVDQLCWDPKHPDLFATAS-----------GDKTIRIWDIRSG-KCTARIETKG 107 (313)
T ss_pred CCceEEEEecchhhhhhhcc-cCCCcchhhheeCCCCCcceEEec-----------CCceEEEEEeccC-cEEEEeeccC
Confidence 46789999987310111111 123457779999998888877654 3334556665443 3444445556
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeE-Ee-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEE
Q 020756 84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-EL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL 161 (321)
Q Consensus 84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~-~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i 161 (321)
.-.-+.|+|+|.++++ ++.+..|.++|.+...+. .. -...++.+.|+-++.++++.. ..|.|.|...-..+.+
T Consensus 108 eni~i~wsp~g~~~~~--~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~---GlG~v~ILsypsLkpv 182 (313)
T KOG1407|consen 108 ENINITWSPDGEYIAV--GNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTN---GLGCVEILSYPSLKPV 182 (313)
T ss_pred cceEEEEcCCCCEEEE--ecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEec---CCceEEEEeccccccc
Confidence 6677999999999999 577889999998654433 33 355788999997777777665 5699999999889999
Q ss_pred EeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee---EEeccCceEEEEEecCCCCCCCCc
Q 020756 162 GTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF---FKKMFDKLFQAEWKPVSPDKFGDI 230 (321)
Q Consensus 162 ~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l---~~~~~~~~~~~~w~P~~~~~~~~~ 230 (321)
.++.+| +..+++|+|+|+|||+++. |..+.|||++.-.+ .....=.|..++|+-++..|.+..
T Consensus 183 ~si~AH~snCicI~f~p~GryfA~GsA------DAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 183 QSIKAHPSNCICIEFDPDGRYFATGSA------DALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred cccccCCcceEEEEECCCCceEeeccc------cceeeccChhHhhhheeeccccCceEEEEeccCcceeeccC
Confidence 999998 6677999999999999994 99999999974322 223334788999999999988774
No 59
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=8.8e-14 Score=134.05 Aligned_cols=200 Identities=16% Similarity=0.204 Sum_probs=129.5
Q ss_pred ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756 5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP 84 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~ 84 (321)
..|.+|++.. ++. .....++.......|||||+.|++....+ |...||.++..+....++. .+.+.
T Consensus 220 ~~I~~~dl~~---g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~---------g~~~Iy~~d~~~~~~~~lt-~~~~~ 285 (427)
T PRK02889 220 PVVYVHDLAT---GRR-RVVANFKGSNSAPAWSPDGRTLAVALSRD---------GNSQIYTVNADGSGLRRLT-QSSGI 285 (427)
T ss_pred cEEEEEECCC---CCE-EEeecCCCCccceEECCCCCEEEEEEccC---------CCceEEEEECCCCCcEECC-CCCCC
Confidence 3577788866 433 33444555667899999999998864221 4456899988776444443 23445
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEE--eCCCceeEE--eCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE
Q 020756 85 VHDVQWSYSGSEFAVVYGFMPASATIF--NKKCRPILE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ 160 (321)
Q Consensus 85 v~~~~wsP~g~~l~~~~g~~~~~i~i~--d~~~~~~~~--~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~ 160 (321)
+..+.|+|||++|+++. ...+...|| ++.+..... ++........|||||++|++.+..+....|++||+.+++.
T Consensus 286 ~~~~~wSpDG~~l~f~s-~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 286 DTEPFFSPDGRSIYFTS-DRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV 364 (427)
T ss_pred CcCeEEcCCCCEEEEEe-cCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence 67789999999998863 333444444 554443332 3333344689999999999877322234799999988764
Q ss_pred EEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe--ccCceEEEEEecC
Q 020756 161 LGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MFDKLFQAEWKPV 222 (321)
Q Consensus 161 i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~--~~~~~~~~~w~P~ 222 (321)
...........+.|||||++|+.++... ....+.+.+.+|...... +...+...+|+|.
T Consensus 365 ~~lt~~~~~~~p~~spdg~~l~~~~~~~---g~~~l~~~~~~g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 365 TALTDTTRDESPSFAPNGRYILYATQQG---GRSVLAAVSSDGRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEccCCCCccCceECCCCCEEEEEEecC---CCEEEEEEECCCCceEEeecCCCCCCCCccCCC
Confidence 4333333446689999999999988521 112355566677655332 4457788899874
No 60
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.61 E-value=2.2e-13 Score=140.97 Aligned_cols=203 Identities=14% Similarity=0.176 Sum_probs=141.4
Q ss_pred CCCceEEEEEcCCcC-CC----CceeeeecccCccceEEeCCC-CCeeEEEEEecccCCCceeecceeEEEEEcCCCcee
Q 020756 2 GSPASVQIYACGKDL-QS----QPLARRSFFRCSTVQLNWNRG-STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG 75 (321)
Q Consensus 2 g~p~~v~v~~~~~~~-~~----~~i~~~~~f~~~~~~~~Wsp~-G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~ 75 (321)
|..+.|+||++.... .+ .++.... .......+.|++. +.+|+. +.. .|. +.+++.......
T Consensus 502 g~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las-~~~---------Dg~--v~lWd~~~~~~~ 568 (793)
T PLN00181 502 GVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVAS-SNF---------EGV--VQVWDVARSQLV 568 (793)
T ss_pred eCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEE-EeC---------CCe--EEEEECCCCeEE
Confidence 568899999986411 01 1222222 2345668899986 455443 221 132 455555544333
Q ss_pred eeecCCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEeCCC-ceeEEe-CCcCeeeEEEc-CCCCeEEEEccCCCCCcEE
Q 020756 76 LVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWN-PKGKFLCLAGFGNLPGDMA 151 (321)
Q Consensus 76 ~v~l~~~~~v~~~~wsP-~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~-~~~~~~~~~~s-PdG~~l~~~g~~n~~g~i~ 151 (321)
.....|.+.|.+++|+| ++..|++ +..|+.+.+||++. ..+..+ +...+.++.|+ ++|.+|++++ .++.|+
T Consensus 569 ~~~~~H~~~V~~l~~~p~~~~~L~S--gs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs---~dg~I~ 643 (793)
T PLN00181 569 TEMKEHEKRVWSIDYSSADPTLLAS--GSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGS---ADHKVY 643 (793)
T ss_pred EEecCCCCCEEEEEEcCCCCCEEEE--EcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEe---CCCeEE
Confidence 33335889999999997 6778877 46789999999964 455555 45678899995 5799999998 899999
Q ss_pred EEECCCCe-EEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-------Ccee--EEeccCceEEEEE
Q 020756 152 FWDYVDGK-QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-------GSLF--FKKMFDKLFQAEW 219 (321)
Q Consensus 152 iwD~~~~~-~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-------g~~l--~~~~~~~~~~~~w 219 (321)
+||+++.+ .+..+.+| .++.+.|+ ++.+|++++. |+.|+|||+. +..+ +..|...+..+.|
T Consensus 644 iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~------D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~ 716 (793)
T PLN00181 644 YYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST------DNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGL 716 (793)
T ss_pred EEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC------CCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEE
Confidence 99998765 45555555 68889997 7889999984 9999999985 2333 4456677888999
Q ss_pred ecCCCCCCCC
Q 020756 220 KPVSPDKFGD 229 (321)
Q Consensus 220 ~P~~~~~~~~ 229 (321)
+|++..+++.
T Consensus 717 s~~~~~lasg 726 (793)
T PLN00181 717 SVSDGYIATG 726 (793)
T ss_pred cCCCCEEEEE
Confidence 9998777654
No 61
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.61 E-value=3.6e-14 Score=142.23 Aligned_cols=212 Identities=16% Similarity=0.174 Sum_probs=139.4
Q ss_pred CCceEEEEEcCCcC---------CCCceeeeecccCccceEEeCCCCCeeEEEEEecc-cCCCceeecceeEEE-----E
Q 020756 3 SPASVQIYACGKDL---------QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDV-DKTNQSYYGESKLNY-----L 67 (321)
Q Consensus 3 ~p~~v~v~~~~~~~---------~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~-d~t~~s~~g~~~l~~-----l 67 (321)
.++.++||+..... -.+++++..-+.+.+.-+.|++||+||+.-..... -...+...|...++- -
T Consensus 35 ~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~ 114 (942)
T KOG0973|consen 35 LDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAK 114 (942)
T ss_pred ccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCccccccccccc
Confidence 56677799887632 13456666667777888899999999988531100 000000000000000 0
Q ss_pred EcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccC
Q 020756 68 TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFG 144 (321)
Q Consensus 68 ~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~ 144 (321)
++..-....+-..|...|.|+.|+|++.+|+.+ ..|.+|.|||.+ .+.+..+ |.+.|..+.|.|-|+||++-+
T Consensus 115 ~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~--s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqs-- 190 (942)
T KOG0973|consen 115 NVESWKVVSILRGHDSDVLDVNWSPDDSLLVSV--SLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQS-- 190 (942)
T ss_pred ccceeeEEEEEecCCCccceeccCCCccEEEEe--cccceEEEEccccceeeeeeecccccccceEECCccCeeeeec--
Confidence 000001223345699999999999999999986 668899999985 3445555 889999999999999999998
Q ss_pred CCCCcEEEEECCCCeEEEeeeCC--------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee---EEeccCc
Q 020756 145 NLPGDMAFWDYVDGKQLGTTRAE--------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF---FKKMFDK 213 (321)
Q Consensus 145 n~~g~i~iwD~~~~~~i~~~~~~--------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l---~~~~~~~ 213 (321)
.|.+|.||++.+..+.+.+..+ ....+.|||||.||+++...- .....+.|.+-.+... +.+|...
T Consensus 191 -dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n--~~~~~~~IieR~tWk~~~~LvGH~~p 267 (942)
T KOG0973|consen 191 -DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN--GGKSTIAIIERGTWKVDKDLVGHSAP 267 (942)
T ss_pred -CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc--CCcceeEEEecCCceeeeeeecCCCc
Confidence 9999999998776555555443 345689999999999877521 0133566655533322 4556667
Q ss_pred eEEEEEec
Q 020756 214 LFQAEWKP 221 (321)
Q Consensus 214 ~~~~~w~P 221 (321)
+..+.|+|
T Consensus 268 ~evvrFnP 275 (942)
T KOG0973|consen 268 VEVVRFNP 275 (942)
T ss_pred eEEEEeCh
Confidence 77777766
No 62
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.61 E-value=6.2e-14 Score=128.49 Aligned_cols=202 Identities=11% Similarity=0.141 Sum_probs=149.0
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK 81 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~ 81 (321)
|....+.+|+.|. ++.+....-+.--.+.+.++++...++... ....++.+.+-...+..+...|
T Consensus 238 G~d~~av~~d~~s---~q~l~~~~Gh~kki~~v~~~~~~~~v~~aS------------ad~~i~vws~~~~s~~~~~~~h 302 (506)
T KOG0289|consen 238 GEDKTAVLFDKPS---NQILATLKGHTKKITSVKFHKDLDTVITAS------------ADEIIRVWSVPLSSEPTSSRPH 302 (506)
T ss_pred CCCCceEEEecch---hhhhhhccCcceEEEEEEeccchhheeecC------------CcceEEeeccccccCccccccc
Confidence 4455677777777 566655555555566677777766655421 1123455555444455666679
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe-CC---cCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-GS---GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 156 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~-~~---~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~ 156 (321)
+++|+.+.-+|.|+||+.+ +.++...+.|++.. .+... +. -.+.+..|+|||-.+.++. .||.|+|||+.
T Consensus 303 ~~~V~~ls~h~tgeYllsA--s~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt---~d~~vkiwdlk 377 (506)
T KOG0289|consen 303 EEPVTGLSLHPTGEYLLSA--SNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT---PDGVVKIWDLK 377 (506)
T ss_pred cccceeeeeccCCcEEEEe--cCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC---CCceEEEEEcC
Confidence 9999999999999999996 66888888898644 33333 22 3478999999999888887 89999999999
Q ss_pred CCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce-eEE---eccCceEEEEEecCCCCCCCC
Q 020756 157 DGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL-FFK---KMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 157 ~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~-l~~---~~~~~~~~~~w~P~~~~~~~~ 229 (321)
++..+..|..| .+..+.||-+|-||++++. |..|+|||+..-. +.. ....++..+.+.+.+.++...
T Consensus 378 s~~~~a~Fpght~~vk~i~FsENGY~Lat~ad------d~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~ 450 (506)
T KOG0289|consen 378 SQTNVAKFPGHTGPVKAISFSENGYWLATAAD------DGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA 450 (506)
T ss_pred CccccccCCCCCCceeEEEeccCceEEEEEec------CCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee
Confidence 99999999888 7899999999999999994 7779999995322 222 122368889998888777655
No 63
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.60 E-value=4.6e-15 Score=135.12 Aligned_cols=143 Identities=19% Similarity=0.265 Sum_probs=119.3
Q ss_pred eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC----CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCc
Q 020756 76 LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK----CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGD 149 (321)
Q Consensus 76 ~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~----~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~ 149 (321)
++-.+|.+.|--++||++|++||.+ ..|.+..+|++. .+..+++ |..+|..+.||||.++|++|| .+-.
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsa--SkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg---~~e~ 292 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASA--SKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG---FDEV 292 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeec--cCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecC---chHh
Confidence 3344688999999999999999995 668888888762 3345555 788999999999999999999 6667
Q ss_pred EEEEECCCCeEEEeeeCC---CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe---ccCceEEEEEecCC
Q 020756 150 MAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK---MFDKLFQAEWKPVS 223 (321)
Q Consensus 150 i~iwD~~~~~~i~~~~~~---~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~---~~~~~~~~~w~P~~ 223 (321)
+.+||+.+|.+...+... .+.+++|.|||..|++|+. |.++.-||++|+.+..- ....|++++-.+|+
T Consensus 293 ~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~------dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dg 366 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSP------DRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDG 366 (519)
T ss_pred eeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCC------CCcEEEecCCcchhhcccccccceeEEEEEcCCC
Confidence 999999999888776653 6788999999999999995 99999999999987443 33569999999999
Q ss_pred CCCCCC
Q 020756 224 PDKFGD 229 (321)
Q Consensus 224 ~~~~~~ 229 (321)
.+++..
T Consensus 367 k~vl~v 372 (519)
T KOG0293|consen 367 KYVLLV 372 (519)
T ss_pred cEEEEE
Confidence 887754
No 64
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.60 E-value=1.5e-13 Score=132.38 Aligned_cols=205 Identities=14% Similarity=0.114 Sum_probs=127.9
Q ss_pred EEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEE--EEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCe
Q 020756 8 QIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLA--VAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV 85 (321)
Q Consensus 8 ~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~--~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v 85 (321)
+||-++.. +....+.+..........|||||+.+++ +.. .. |...||++++.++...++. ...+..
T Consensus 166 ~l~~~d~d--G~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~----~~-----g~~~I~~~~l~~g~~~~lt-~~~g~~ 233 (428)
T PRK01029 166 ELWSVDYD--GQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSY----KL-----GVPKIFLGSLENPAGKKIL-ALQGNQ 233 (428)
T ss_pred eEEEEcCC--CCCceEcccCCCCcccceEccCCCceEEEEEEc----cC-----CCceEEEEECCCCCceEee-cCCCCc
Confidence 56666553 3444555555666778899999987544 321 11 3456899999887555554 345666
Q ss_pred EEEEECcCCCEEEEEEc---cCCCeEEEEeCCC---ceeEEe--C-CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756 86 HDVQWSYSGSEFAVVYG---FMPASATIFNKKC---RPILEL--G-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 156 (321)
Q Consensus 86 ~~~~wsP~g~~l~~~~g---~~~~~i~i~d~~~---~~~~~~--~-~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~ 156 (321)
...+|||||++|+++.. ..+-.+.+|++.. .....+ + ........|||||+.|++.+..+....|+++++.
T Consensus 234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~ 313 (428)
T PRK01029 234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQID 313 (428)
T ss_pred cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECc
Confidence 78999999999998742 1122334466642 222222 2 2344678999999999987632222356666664
Q ss_pred C-CeEEEeeeC--CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe--ccCceEEEEEecCCCCCC
Q 020756 157 D-GKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MFDKLFQAEWKPVSPDKF 227 (321)
Q Consensus 157 ~-~~~i~~~~~--~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~--~~~~~~~~~w~P~~~~~~ 227 (321)
. +.....+.. ..+....|||||++|+...... ....+.+||+.+..+... ....+....|+|++..++
T Consensus 314 ~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~---g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~ 386 (428)
T PRK01029 314 PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIK---GVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLV 386 (428)
T ss_pred ccccceEEeccCCCCccceeECCCCCEEEEEEcCC---CCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEE
Confidence 2 222222222 2556789999999999887421 134688999865544222 223567799999988765
No 65
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.60 E-value=6e-14 Score=135.90 Aligned_cols=208 Identities=16% Similarity=0.209 Sum_probs=159.3
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK 81 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~ 81 (321)
|.-+++.||+..+ .++|.+..- .......|=|.++++++.. ++ |+-.+|.+.....-+. +. .|
T Consensus 391 ga~~SikiWn~~t---~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~--------k~--Gel~vfdlaS~~l~Et-i~-AH 453 (888)
T KOG0306|consen 391 GAGESIKIWNRDT---LKCIRTITC--GYILASKFVPGDRYIVLGT--------KN--GELQVFDLASASLVET-IR-AH 453 (888)
T ss_pred cCCCcEEEEEccC---cceeEEecc--ccEEEEEecCCCceEEEec--------cC--CceEEEEeehhhhhhh-hh-cc
Confidence 4567899999988 688877664 3666777888888887753 22 5556666544332222 22 58
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC--------ceeEEe-------CCcCeeeEEEcCCCCeEEEEccCCC
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--------RPILEL-------GSGPYNTVRWNPKGKFLCLAGFGNL 146 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~--------~~~~~~-------~~~~~~~~~~sPdG~~l~~~g~~n~ 146 (321)
++.|-+++.+||++.|++. ..|.++.+||.+. +.+..+ -...+-++.+||||++|+++- +
T Consensus 454 dgaIWsi~~~pD~~g~vT~--saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL---L 528 (888)
T KOG0306|consen 454 DGAIWSISLSPDNKGFVTG--SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL---L 528 (888)
T ss_pred ccceeeeeecCCCCceEEe--cCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe---c
Confidence 9999999999999999994 6688999998731 111222 145788999999999999998 8
Q ss_pred CCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee--EEeccCceEEEEEec
Q 020756 147 PGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFDKLFQAEWKP 221 (321)
Q Consensus 147 ~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~~~~~~~~~~w~P 221 (321)
|.+|+||-+++.+...++-+| .+.++..|||+..|+|++ +|.+|+||-++ |.+- +..|.+.++.+.|-|
T Consensus 529 dnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgS------ADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P 602 (888)
T KOG0306|consen 529 DNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGS------ADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLP 602 (888)
T ss_pred cCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEecc------CCCceEEeccccchhhhhhhcccCceeEEEEcc
Confidence 999999999999888777777 899999999999999999 59999999885 4443 456889999999999
Q ss_pred CCCCCCCCc-chhhhcc
Q 020756 222 VSPDKFGDI-SELIKSV 237 (321)
Q Consensus 222 ~~~~~~~~~-~~~~~~~ 237 (321)
..-.+|+.. +.-.+.|
T Consensus 603 ~~~~FFt~gKD~kvKqW 619 (888)
T KOG0306|consen 603 KTHLFFTCGKDGKVKQW 619 (888)
T ss_pred cceeEEEecCcceEEee
Confidence 887777764 3333445
No 66
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.60 E-value=8.4e-14 Score=129.18 Aligned_cols=201 Identities=13% Similarity=0.220 Sum_probs=156.5
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec-C
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-R 80 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l-~ 80 (321)
+.-|.|+||++.+ +..+.+...+.+......|+|++..++++++.| + .+.++++.+... +..+ .
T Consensus 87 D~sG~V~vfD~k~---r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd-----~------v~k~~d~s~a~v-~~~l~~ 151 (487)
T KOG0310|consen 87 DESGHVKVFDMKS---RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDD-----K------VVKYWDLSTAYV-QAELSG 151 (487)
T ss_pred CCcCcEEEecccc---HHHHHHHhhccCceeEEEecccCCeEEEecCCC-----c------eEEEEEcCCcEE-EEEecC
Confidence 4568999999665 556777777888888999999999988875322 1 133445555533 4333 4
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC--ceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756 81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 157 (321)
Q Consensus 81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~--~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~ 157 (321)
|++.|.+.+|+|-..++++. |.=|++|++||.+. ..+.++ |..++..+.+-|.|..|+++| ...|++||+.+
T Consensus 152 htDYVR~g~~~~~~~hivvt-GsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg----Gn~vkVWDl~~ 226 (487)
T KOG0310|consen 152 HTDYVRCGDISPANDHIVVT-GSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG----GNSVKVWDLTT 226 (487)
T ss_pred CcceeEeeccccCCCeEEEe-cCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC----CCeEEEEEecC
Confidence 89999999999988888776 55599999999964 577778 788999999999999999987 24899999985
Q ss_pred C-eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee-EEecc-CceEEEEEecCCCCCCC
Q 020756 158 G-KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF-FKKMF-DKLFQAEWKPVSPDKFG 228 (321)
Q Consensus 158 ~-~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l-~~~~~-~~~~~~~w~P~~~~~~~ 228 (321)
| +.++....| .++++.+..|+..|++++ .|+.+++||++...+ +...+ ..+.++..+|++..++-
T Consensus 227 G~qll~~~~~H~KtVTcL~l~s~~~rLlS~s------LD~~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~vi 296 (487)
T KOG0310|consen 227 GGQLLTSMFNHNKTVTCLRLASDSTRLLSGS------LDRHVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVI 296 (487)
T ss_pred CceehhhhhcccceEEEEEeecCCceEeecc------cccceEEEEccceEEEEeeecccceeeEEecCCCceEEE
Confidence 5 666666534 899999999999999999 599999999765544 55444 58999999997766553
No 67
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.59 E-value=2.1e-14 Score=123.73 Aligned_cols=201 Identities=11% Similarity=0.207 Sum_probs=150.9
Q ss_pred CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC
Q 020756 4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG 83 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~ 83 (321)
+|++|||+++.. ..||....-++.++..+.||+..++..++. ++.|+ |.+++.+.....+....|..
T Consensus 82 DGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~~~lts---------SWD~T--iKLW~~~r~~Sv~Tf~gh~~ 148 (311)
T KOG0277|consen 82 DGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRRIFLTS---------SWDGT--IKLWDPNRPNSVQTFNGHNS 148 (311)
T ss_pred CceEEEeccCCC--CcchhHHHhhhhheEEeccccccceeEEee---------ccCCc--eEeecCCCCcceEeecCCcc
Confidence 789999998763 678888888899999999999888887763 33354 44555566555555567899
Q ss_pred CeEEEEECcC-CCEEEEEEccCCCeEEEEeCCC--cee-EEeCCcCeeeEEEcCCCCeE-EEEccCCCCCcEEEEECCCC
Q 020756 84 PVHDVQWSYS-GSEFAVVYGFMPASATIFNKKC--RPI-LELGSGPYNTVRWNPKGKFL-CLAGFGNLPGDMAFWDYVDG 158 (321)
Q Consensus 84 ~v~~~~wsP~-g~~l~~~~g~~~~~i~i~d~~~--~~~-~~~~~~~~~~~~~sPdG~~l-~~~g~~n~~g~i~iwD~~~~ 158 (321)
-|+.++|||. ...|+.+ ..|+.+.|||++. +.+ ...|...+-++.||--...+ ++++ .|+.|+.||+++.
T Consensus 149 ~Iy~a~~sp~~~nlfas~--Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~---vd~~vr~wDir~~ 223 (311)
T KOG0277|consen 149 CIYQAAFSPHIPNLFASA--SGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGG---VDNLVRGWDIRNL 223 (311)
T ss_pred EEEEEecCCCCCCeEEEc--cCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecC---CCceEEEEehhhc
Confidence 9999999994 6677776 4478999999853 333 34488899999999866555 5555 7899999999876
Q ss_pred -eEEEeeeCC--CeeeEEEccCCCE-EEEEEcCCceeecCcEEEEeec-Ccee---EEeccCceEEEEEecCCCCCCC
Q 020756 159 -KQLGTTRAE--CSVTSEWSPDGRY-FMTATTAPRLQIDNGIKIFHHN-GSLF---FKKMFDKLFQAEWKPVSPDKFG 228 (321)
Q Consensus 159 -~~i~~~~~~--~~~~~~wSpdG~~-l~t~~s~~rl~~d~~v~iw~~~-g~~l---~~~~~~~~~~~~w~P~~~~~~~ 228 (321)
..+..+.+| .+..+.|||...- ||+++ +|-+++|||+. +..+ +..|.+-++.+.|++..+..+.
T Consensus 224 r~pl~eL~gh~~AVRkvk~Sph~~~lLaSas------YDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vA 295 (311)
T KOG0277|consen 224 RTPLFELNGHGLAVRKVKFSPHHASLLASAS------YDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVA 295 (311)
T ss_pred cccceeecCCceEEEEEecCcchhhHhhhcc------ccceEEecccccchhhhhhhhccceEEeccccccccCceee
Confidence 456666666 6778999997554 45555 69999999985 3222 5567778899999997665554
No 68
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.59 E-value=9.1e-14 Score=128.95 Aligned_cols=200 Identities=15% Similarity=0.156 Sum_probs=152.4
Q ss_pred ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756 5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP 84 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~ 84 (321)
..|.||+... ...+.+.+-|+...+...|-.||+.+++. |.+ |-..+|. ......-+.--.|+.|
T Consensus 48 ~rvqly~~~~---~~~~k~~srFk~~v~s~~fR~DG~LlaaG-----D~s-----G~V~vfD--~k~r~iLR~~~ah~ap 112 (487)
T KOG0310|consen 48 VRVQLYSSVT---RSVRKTFSRFKDVVYSVDFRSDGRLLAAG-----DES-----GHVKVFD--MKSRVILRQLYAHQAP 112 (487)
T ss_pred cEEEEEecch---hhhhhhHHhhccceeEEEeecCCeEEEcc-----CCc-----CcEEEec--cccHHHHHHHhhccCc
Confidence 4678888877 66777788899999999999999998874 333 3333442 2221111222358999
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeE-Ee--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC-eE
Q 020756 85 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-EL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQ 160 (321)
Q Consensus 85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~-~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~-~~ 160 (321)
|+.+.|+|++..+++. |+.|..+.+||+.+.-+. ++ |+..+.+.+|+|....|+++| ..||.|++||.+.. ..
T Consensus 113 v~~~~f~~~d~t~l~s-~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtG--sYDg~vrl~DtR~~~~~ 189 (487)
T KOG0310|consen 113 VHVTKFSPQDNTMLVS-GSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTG--SYDGKVRLWDTRSLTSR 189 (487)
T ss_pred eeEEEecccCCeEEEe-cCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEec--CCCceEEEEEeccCCce
Confidence 9999999988766665 566789999999765443 44 788999999999876555544 28999999999876 77
Q ss_pred EEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee---EEeccCceEEEEEecCCCCCCCC
Q 020756 161 LGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF---FKKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 161 i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l---~~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
+..+.+. .+-.+.+-|.|..|++|+ .|.+++||+. |..+ ...|...|.++.+.-++..+++.
T Consensus 190 v~elnhg~pVe~vl~lpsgs~iasAg-------Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~ 256 (487)
T KOG0310|consen 190 VVELNHGCPVESVLALPSGSLIASAG-------GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSG 256 (487)
T ss_pred eEEecCCCceeeEEEcCCCCEEEEcC-------CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeec
Confidence 7777765 778899999999999999 8999999996 5544 22378889999998888888876
No 69
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.59 E-value=1.4e-12 Score=118.01 Aligned_cols=201 Identities=9% Similarity=0.072 Sum_probs=134.0
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK 81 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~ 81 (321)
+..+.|.+|++.+ ++.+...... .....+.|+|+|+.+++... ....++.++...... ...+..
T Consensus 8 ~~d~~v~~~d~~t---~~~~~~~~~~-~~~~~l~~~~dg~~l~~~~~-----------~~~~v~~~d~~~~~~-~~~~~~ 71 (300)
T TIGR03866 8 EKDNTISVIDTAT---LEVTRTFPVG-QRPRGITLSKDGKLLYVCAS-----------DSDTIQVIDLATGEV-IGTLPS 71 (300)
T ss_pred cCCCEEEEEECCC---CceEEEEECC-CCCCceEECCCCCEEEEEEC-----------CCCeEEEEECCCCcE-EEeccC
Confidence 4578999999987 5655544432 33557999999998766531 112356666654322 222222
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEeC-CcCeeeEEEcCCCCeEEEEccCCCC-CcEEEEECCCC
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILELG-SGPYNTVRWNPKGKFLCLAGFGNLP-GDMAFWDYVDG 158 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~~-~~~~~~~~~sPdG~~l~~~g~~n~~-g~i~iwD~~~~ 158 (321)
...+..+.|+|+|+.+++. +..++.+.+||++.. .+..+. ......+.|+|+|++++++. .+ ..+.+||..++
T Consensus 72 ~~~~~~~~~~~~g~~l~~~-~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~---~~~~~~~~~d~~~~ 147 (300)
T TIGR03866 72 GPDPELFALHPNGKILYIA-NEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTS---ETTNMAHFIDTKTY 147 (300)
T ss_pred CCCccEEEECCCCCEEEEE-cCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEe---cCCCeEEEEeCCCC
Confidence 3345789999999987765 345679999999654 445553 34467899999999999887 43 35778899888
Q ss_pred eEEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC-ceeEEec--c-----C--ceEEEEEecCCCCCC
Q 020756 159 KQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKM--F-----D--KLFQAEWKPVSPDKF 227 (321)
Q Consensus 159 ~~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g-~~l~~~~--~-----~--~~~~~~w~P~~~~~~ 227 (321)
+.+..... .....+.|+|||++|++++. .++.+++||+.. +.+.... . . ....+.|+|++..++
T Consensus 148 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~ 222 (300)
T TIGR03866 148 EIVDNVLVDQRPRFAEFTADGKELWVSSE-----IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAF 222 (300)
T ss_pred eEEEEEEcCCCccEEEECCCCCEEEEEcC-----CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEE
Confidence 77654433 35667899999999876653 378999999954 3332211 1 1 234678899887654
No 70
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.58 E-value=1.2e-12 Score=118.34 Aligned_cols=203 Identities=11% Similarity=0.092 Sum_probs=135.0
Q ss_pred CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756 3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE 82 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~ 82 (321)
..+.|++|++.+ ++.+..... ..+...+.|+|+|+.+++... ....|+.++.... .....+...
T Consensus 51 ~~~~v~~~d~~~---~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~-----------~~~~l~~~d~~~~-~~~~~~~~~ 114 (300)
T TIGR03866 51 DSDTIQVIDLAT---GEVIGTLPS-GPDPELFALHPNGKILYIANE-----------DDNLVTVIDIETR-KVLAEIPVG 114 (300)
T ss_pred CCCeEEEEECCC---CcEEEeccC-CCCccEEEECCCCCEEEEEcC-----------CCCeEEEEECCCC-eEEeEeeCC
Confidence 457899999887 555443332 234567899999998766421 1123666666543 222223333
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCcee-EEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ 160 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~-~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~ 160 (321)
..+.+++|+|+|+.+++... ....+.+||...... ..+ .......+.|+|+|++|++++ ..++.|.+||+++++.
T Consensus 115 ~~~~~~~~~~dg~~l~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 115 VEPEGMAVSPDGKIVVNTSE-TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSS--EIGGTVSVIDVATRKV 191 (300)
T ss_pred CCcceEEECCCCCEEEEEec-CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEc--CCCCEEEEEEcCccee
Confidence 45788999999999888633 223567789864433 222 334557799999999987765 2478999999999877
Q ss_pred EEeeeCC---------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeEE-eccCceEEEEEecCCCCCCCC
Q 020756 161 LGTTRAE---------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK-KMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 161 i~~~~~~---------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~-~~~~~~~~~~w~P~~~~~~~~ 229 (321)
+..+..+ ....+.|+|||++++++.. .++.+.+||.. ++.+.. .....+..+.|+|++..++..
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~-----~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~ 266 (300)
T TIGR03866 192 IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALG-----PANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTT 266 (300)
T ss_pred eeeeeecccccccccCCccceEECCCCCEEEEEcC-----CCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEE
Confidence 6655321 2346889999998766543 26789999985 444322 233468899999999988753
No 71
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.58 E-value=3.1e-14 Score=138.21 Aligned_cols=199 Identities=17% Similarity=0.340 Sum_probs=144.1
Q ss_pred CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC
Q 020756 4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG 83 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~ 83 (321)
-|.|.+|++....-++.+...+-+......+.|++.-.++++..+.| |...+|.+..+.. ........+
T Consensus 109 nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQD---------g~vK~~DlR~~~S--~~t~~~nSE 177 (839)
T KOG0269|consen 109 NGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQD---------GTVKCWDLRSKKS--KSTFRSNSE 177 (839)
T ss_pred CCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCC---------ceEEEEeeecccc--cccccccch
Confidence 36899999976321222333333456677899999999998875433 5555666654443 333334678
Q ss_pred CeEEEEECc-CCCEEEEEEccCCCeEEEEeCCC----ceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756 84 PVHDVQWSY-SGSEFAVVYGFMPASATIFNKKC----RPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 158 (321)
Q Consensus 84 ~v~~~~wsP-~g~~l~~~~g~~~~~i~i~d~~~----~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~ 158 (321)
.|.|++|+| .+.+|+.+ ...|.+.+||++. ...+.-|.+++.++.|+|++.+||++| .|+.|+|||+.+.
T Consensus 178 SiRDV~fsp~~~~~F~s~--~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGG---RDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 178 SIRDVKFSPGYGNKFASI--HDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGG---RDKMVKIWDMTDS 252 (839)
T ss_pred hhhceeeccCCCceEEEe--cCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecC---CCccEEEEeccCC
Confidence 999999999 57788875 5578999999964 233444999999999999999999999 9999999999755
Q ss_pred e--EEEeeeC-CCeeeEEEccCCCEEE-EEEcCCceeecCcEEEEeecCcee----EEeccCceEEEEEecC
Q 020756 159 K--QLGTTRA-ECSVTSEWSPDGRYFM-TATTAPRLQIDNGIKIFHHNGSLF----FKKMFDKLFQAEWKPV 222 (321)
Q Consensus 159 ~--~i~~~~~-~~~~~~~wSpdG~~l~-t~~s~~rl~~d~~v~iw~~~g~~l----~~~~~~~~~~~~w~P~ 222 (321)
+ .+.++.. ..+..+.|-|+-++.+ +++ +.+|..|+|||+....+ +..|.+.+..+.|.-.
T Consensus 253 ~~~~~~tInTiapv~rVkWRP~~~~hLAtcs----mv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~ 320 (839)
T KOG0269|consen 253 RAKPKHTINTIAPVGRVKWRPARSYHLATCS----MVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSG 320 (839)
T ss_pred CccceeEEeecceeeeeeeccCccchhhhhh----ccccceEEEEeeccccccceeeeccCccccceeccCC
Confidence 2 3333333 4778899999866544 444 34788999999976544 6678888999999773
No 72
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=6.3e-13 Score=117.68 Aligned_cols=203 Identities=11% Similarity=0.189 Sum_probs=138.5
Q ss_pred CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC
Q 020756 4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG 83 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~ 83 (321)
.-.++||+..+ +..+....-.|-+.-.+.|-...+.++.. ++.. ...|.++++....-.+.-..|..
T Consensus 35 dDsl~LYd~~~---g~~~~ti~skkyG~~~~~Fth~~~~~i~s-Stk~---------d~tIryLsl~dNkylRYF~GH~~ 101 (311)
T KOG1446|consen 35 DDSLRLYDSLS---GKQVKTINSKKYGVDLACFTHHSNTVIHS-STKE---------DDTIRYLSLHDNKYLRYFPGHKK 101 (311)
T ss_pred CCeEEEEEcCC---CceeeEeecccccccEEEEecCCceEEEc-cCCC---------CCceEEEEeecCceEEEcCCCCc
Confidence 34789999998 67776666665555566666655555443 2211 12355666555444444445666
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEeCC-------------------------------------------CceeEE
Q 020756 84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKK-------------------------------------------CRPILE 120 (321)
Q Consensus 84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-------------------------------------------~~~~~~ 120 (321)
.|.++.-+|-++.|+. +..|.+|++||++ ..+..+
T Consensus 102 ~V~sL~~sP~~d~FlS--~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~t 179 (311)
T KOG1446|consen 102 RVNSLSVSPKDDTFLS--SSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTT 179 (311)
T ss_pred eEEEEEecCCCCeEEe--cccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCcee
Confidence 7777777776666655 3556666666654 112222
Q ss_pred e--C---CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-----CeeeEEEccCCCEEEEEEcCCce
Q 020756 121 L--G---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-----CSVTSEWSPDGRYFMTATTAPRL 190 (321)
Q Consensus 121 ~--~---~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-----~~~~~~wSpdG~~l~t~~s~~rl 190 (321)
| . ....+.+.|||||++|+++. ..+.+++.|.-+|..+.++..+ .....+|+|||+||+++..
T Consensus 180 f~i~~~~~~ew~~l~FS~dGK~iLlsT---~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~---- 252 (311)
T KOG1446|consen 180 FSITDNDEAEWTDLEFSPDGKSILLST---NASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSD---- 252 (311)
T ss_pred EccCCCCccceeeeEEcCCCCEEEEEe---CCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecC----
Confidence 2 1 34567899999999999998 7789999999999988888765 2246899999999999994
Q ss_pred eecCcEEEEee-cCceeE--Ee-ccCceEEEEEecCCCCCCCCc
Q 020756 191 QIDNGIKIFHH-NGSLFF--KK-MFDKLFQAEWKPVSPDKFGDI 230 (321)
Q Consensus 191 ~~d~~v~iw~~-~g~~l~--~~-~~~~~~~~~w~P~~~~~~~~~ 230 (321)
|+.+.+|++ +|..+. .+ +...+..+.|+|.-....++.
T Consensus 253 --dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~ 294 (311)
T KOG1446|consen 253 --DGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS 294 (311)
T ss_pred --CCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC
Confidence 899999999 566653 33 356777888999877766653
No 73
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=6.8e-13 Score=127.80 Aligned_cols=191 Identities=10% Similarity=0.112 Sum_probs=121.3
Q ss_pred ceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEE--EEcCC---CceeeeecCCCCCeEEEEECcCC
Q 020756 20 PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNY--LTTDG---THEGLVPLRKEGPVHDVQWSYSG 94 (321)
Q Consensus 20 ~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~--l~~~g---~~~~~v~l~~~~~v~~~~wsP~g 94 (321)
...+.+.++.......|||||+.|+++.. .. |...+|. ++... +...++.-...+......|||||
T Consensus 222 ~~~~lt~~~g~~~~p~wSPDG~~Laf~s~----~~-----g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG 292 (428)
T PRK01029 222 AGKKILALQGNQLMPTFSPRKKLLAFISD----RY-----GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDG 292 (428)
T ss_pred CceEeecCCCCccceEECCCCCEEEEEEC----CC-----CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCC
Confidence 34455556777778999999999998742 11 2223444 23322 22233332223345678999999
Q ss_pred CEEEEEEccCCC--eEEEEeCC--CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-
Q 020756 95 SEFAVVYGFMPA--SATIFNKK--CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE- 167 (321)
Q Consensus 95 ~~l~~~~g~~~~--~i~i~d~~--~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~- 167 (321)
+.|+++.. .++ .+.++++. +.....+ +...+..+.|||||+.|++.+..+....|++||+.+++........
T Consensus 293 ~~Laf~s~-~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~ 371 (428)
T PRK01029 293 TRLVFVSN-KDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPE 371 (428)
T ss_pred CEEEEEEC-CCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCC
Confidence 99998753 233 45555653 2223333 4456678999999999999874333468999999888654433332
Q ss_pred CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE--eccCceEEEEEecCC
Q 020756 168 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK--KMFDKLFQAEWKPVS 223 (321)
Q Consensus 168 ~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~--~~~~~~~~~~w~P~~ 223 (321)
....+.|+|||++|+..... +....+.++++++..... .....+...+|+|..
T Consensus 372 ~~~~p~wSpDG~~L~f~~~~---~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 372 NKESPSWAIDSLHLVYSAGN---SNESELYLISLITKKTRKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred CccceEECCCCCEEEEEECC---CCCceEEEEECCCCCEEEeecCCCcccCceecCCC
Confidence 55678999999999977642 124568888887654422 233456788998754
No 74
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=5.4e-13 Score=129.27 Aligned_cols=190 Identities=12% Similarity=0.075 Sum_probs=123.6
Q ss_pred eeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEc
Q 020756 23 RRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYG 102 (321)
Q Consensus 23 ~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g 102 (321)
.....+.......|||||+.|+++... . +...||.+++.++....+. ...+....+.|||||+.|+++..
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~----~-----g~~~L~~~dl~tg~~~~lt-~~~g~~~~~~wSPDG~~La~~~~ 281 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFE----N-----RKAEIFVQDIYTQVREKVT-SFPGINGAPRFSPDGKKLALVLS 281 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEec----C-----CCcEEEEEECCCCCeEEec-CCCCCcCCeeECCCCCEEEEEEe
Confidence 344445566788999999999987421 1 3346899998776443333 22345568999999999987632
Q ss_pred cCCC--eEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEe-eeCCCeeeEEEccC
Q 020756 103 FMPA--SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TRAECSVTSEWSPD 177 (321)
Q Consensus 103 ~~~~--~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~-~~~~~~~~~~wSpd 177 (321)
.++ .|.++|+.+..+..+ +......+.|+|||++|++.+..+....|+++|+.+++.... +.........||||
T Consensus 282 -~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpD 360 (448)
T PRK04792 282 -KDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPD 360 (448)
T ss_pred -CCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCC
Confidence 233 688889877666655 334456789999999999877433345788889887754332 33334456799999
Q ss_pred CCEEEEEEcCCceeecCcEEE--EeecCceeEEecc-CceEEEEEecCCCCCCC
Q 020756 178 GRYFMTATTAPRLQIDNGIKI--FHHNGSLFFKKMF-DKLFQAEWKPVSPDKFG 228 (321)
Q Consensus 178 G~~l~t~~s~~rl~~d~~v~i--w~~~g~~l~~~~~-~~~~~~~w~P~~~~~~~ 228 (321)
|++|+..+. .++...| +|+.+..+..... .......|+|++..++-
T Consensus 361 G~~l~~~~~-----~~g~~~I~~~dl~~g~~~~lt~~~~d~~ps~spdG~~I~~ 409 (448)
T PRK04792 361 GRSMIMVNR-----TNGKFNIARQDLETGAMQVLTSTRLDESPSVAPNGTMVIY 409 (448)
T ss_pred CCEEEEEEe-----cCCceEEEEEECCCCCeEEccCCCCCCCceECCCCCEEEE
Confidence 999998764 2344445 5555443321111 11224589999876653
No 75
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.57 E-value=2.7e-13 Score=122.03 Aligned_cols=204 Identities=15% Similarity=0.180 Sum_probs=144.5
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK 81 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~ 81 (321)
|..|.|+||.+.+ +...+..-.--.+..=|.|+|.+..|+.-+. | |. +|.+.+......++.-.|
T Consensus 125 dmsG~v~v~~~st---g~~~~~~~~e~~dieWl~WHp~a~illAG~~-D---------Gs--vWmw~ip~~~~~kv~~Gh 189 (399)
T KOG0296|consen 125 DMSGKVLVFKVST---GGEQWKLDQEVEDIEWLKWHPRAHILLAGST-D---------GS--VWMWQIPSQALCKVMSGH 189 (399)
T ss_pred CCCccEEEEEccc---CceEEEeecccCceEEEEecccccEEEeecC-C---------Cc--EEEEECCCcceeeEecCC
Confidence 4678999999998 4444333322356667899998887776421 1 43 555565554567777789
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEeC---CcC--------------------------------
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELG---SGP-------------------------------- 125 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~~---~~~-------------------------------- 125 (321)
..++++=.|.|+|+.+++. +.+++|.+||.+ +.+++.+. ...
T Consensus 190 ~~~ct~G~f~pdGKr~~tg--y~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKV 267 (399)
T KOG0296|consen 190 NSPCTCGEFIPDGKRILTG--YDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKV 267 (399)
T ss_pred CCCcccccccCCCceEEEE--ecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceE
Confidence 9999999999999999995 568999999985 34444431 000
Q ss_pred ------------------eeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEc
Q 020756 126 ------------------YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATT 186 (321)
Q Consensus 126 ------------------~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s 186 (321)
..++.+.|....|=++.-|..||+|-|||+...+.-...++. .++.+.|-+ ..+|++++.
T Consensus 268 v~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~ 346 (399)
T KOG0296|consen 268 VNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACA 346 (399)
T ss_pred EEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeecc
Confidence 112222222222211111238999999999887666666655 799999999 788888884
Q ss_pred CCceeecCcEEEEee-cCcee--EEeccCceEEEEEecCCCCCCCC
Q 020756 187 APRLQIDNGIKIFHH-NGSLF--FKKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 187 ~~rl~~d~~v~iw~~-~g~~l--~~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
++.|++||. +|+++ |.+|+..|++++.+|+...+++.
T Consensus 347 ------~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~ 386 (399)
T KOG0296|consen 347 ------NGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTV 386 (399)
T ss_pred ------CceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEe
Confidence 999999998 67777 77899999999999998877765
No 76
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.57 E-value=1.2e-13 Score=119.04 Aligned_cols=139 Identities=21% Similarity=0.418 Sum_probs=102.5
Q ss_pred EEEEECcCCCEEEEEEcc-CC-------CeEEEEeC--CCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEE
Q 020756 86 HDVQWSYSGSEFAVVYGF-MP-------ASATIFNK--KCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF 152 (321)
Q Consensus 86 ~~~~wsP~g~~l~~~~g~-~~-------~~i~i~d~--~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~i 152 (321)
..+.|+|+|++|++.... .+ +...||.+ +..++..+ ..+++.+++|+|+|+.++++. |+.+..|.|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~-g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIY-GSMPAKVTL 87 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEE-ccCCcccEE
Confidence 468999999999986541 11 23455544 44444444 356799999999999887652 235679999
Q ss_pred EECCCCeEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC-ceeEEeccCceEEEEEecCCCCCCCC
Q 020756 153 WDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 153 wD~~~~~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g-~~l~~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
||++ ++.+..+.......+.|||+|++|++++.. ...+.+.|||... +.+.......+..+.|+|++..+++.
T Consensus 88 yd~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~---n~~G~l~~wd~~~~~~i~~~~~~~~t~~~WsPdGr~~~ta 161 (194)
T PF08662_consen 88 YDVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFG---NLNGDLEFWDVRKKKKISTFEHSDATDVEWSPDGRYLATA 161 (194)
T ss_pred EcCc-ccEeEeecCCCceEEEECCCCCEEEEEEcc---CCCcEEEEEECCCCEEeeccccCcEEEEEEcCCCCEEEEE
Confidence 9996 777888877677889999999999999831 0134599999964 45555566678899999999988875
No 77
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=5.4e-13 Score=129.30 Aligned_cols=200 Identities=12% Similarity=0.096 Sum_probs=127.6
Q ss_pred eEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCe
Q 020756 6 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV 85 (321)
Q Consensus 6 ~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v 85 (321)
.|.++++.. ++ ....+.++.....+.|||||+.|++....+ |...||.++..+.....+. .+....
T Consensus 243 ~L~~~dl~t---g~-~~~lt~~~g~~~~~~wSPDG~~La~~~~~~---------g~~~Iy~~dl~tg~~~~lt-~~~~~~ 308 (448)
T PRK04792 243 EIFVQDIYT---QV-REKVTSFPGINGAPRFSPDGKKLALVLSKD---------GQPEIYVVDIATKALTRIT-RHRAID 308 (448)
T ss_pred EEEEEECCC---CC-eEEecCCCCCcCCeeECCCCCEEEEEEeCC---------CCeEEEEEECCCCCeEECc-cCCCCc
Confidence 355555544 33 233444555556789999999998864321 4456899998776554443 234456
Q ss_pred EEEEECcCCCEEEEEEcc-CCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEE
Q 020756 86 HDVQWSYSGSEFAVVYGF-MPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG 162 (321)
Q Consensus 86 ~~~~wsP~g~~l~~~~g~-~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~ 162 (321)
..+.|+|||+.|++.... ....+.++|+.+.....+ .........|+|||++|++.+..+....|+++|+.+++...
T Consensus 309 ~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~ 388 (448)
T PRK04792 309 TEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV 388 (448)
T ss_pred cceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE
Confidence 789999999999886432 123677778865544443 22233457999999999998743333467888998875433
Q ss_pred eeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe--ccCceEEEEEecC
Q 020756 163 TTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MFDKLFQAEWKPV 222 (321)
Q Consensus 163 ~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~--~~~~~~~~~w~P~ 222 (321)
...........|+|||++|+.++... ....+.+++.+|...... ....+...+|+|.
T Consensus 389 lt~~~~d~~ps~spdG~~I~~~~~~~---g~~~l~~~~~~G~~~~~l~~~~g~~~~p~Wsp~ 447 (448)
T PRK04792 389 LTSTRLDESPSVAPNGTMVIYSTTYQ---GKQVLAAVSIDGRFKARLPAGQGEVKSPAWSPF 447 (448)
T ss_pred ccCCCCCCCceECCCCCEEEEEEecC---CceEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence 22222233568999999999888520 112367778888765433 3346677888874
No 78
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.57 E-value=9.3e-14 Score=124.90 Aligned_cols=198 Identities=12% Similarity=0.143 Sum_probs=151.4
Q ss_pred EEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeE
Q 020756 7 VQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVH 86 (321)
Q Consensus 7 v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~ 86 (321)
+.+|+.... .+++....-.+.....+.+-|.|++|+... .|. .+..++.+.+........|.+-|+
T Consensus 174 ~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd~ilS~s---rD~---------tik~We~~tg~cv~t~~~h~ewvr 239 (406)
T KOG0295|consen 174 AKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGDHILSCS---RDN---------TIKAWECDTGYCVKTFPGHSEWVR 239 (406)
T ss_pred hhheeHHHH--HHHHHHhcCcccceeeEEEEecCCeeeecc---ccc---------ceeEEecccceeEEeccCchHhEE
Confidence 677888763 355666666667777888999999987753 222 245566666644445456888999
Q ss_pred EEEECcCCCEEEEEEccCCCeEEEEeCCCc---eeEEeCCcCeeeEEEcCC---------------CCeEEEEccCCCCC
Q 020756 87 DVQWSYSGSEFAVVYGFMPASATIFNKKCR---PILELGSGPYNTVRWNPK---------------GKFLCLAGFGNLPG 148 (321)
Q Consensus 87 ~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~---~~~~~~~~~~~~~~~sPd---------------G~~l~~~g~~n~~g 148 (321)
-++-+.||..|+.+ +.+.++++|-+..+ .....|..++.+++|-|. |.+++.++ .|+
T Consensus 240 ~v~v~~DGti~As~--s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~S---rDk 314 (406)
T KOG0295|consen 240 MVRVNQDGTIIASC--SNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGS---RDK 314 (406)
T ss_pred EEEecCCeeEEEec--CCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeec---ccc
Confidence 99999999999885 66889999987544 666668999999999885 24666666 899
Q ss_pred cEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-eeE--EeccCceEEEEEecCC
Q 020756 149 DMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFF--KKMFDKLFQAEWKPVS 223 (321)
Q Consensus 149 ~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-~l~--~~~~~~~~~~~w~P~~ 223 (321)
+|++||+.++.++-++.+| .+..++|+|.|+||+++.. |.++++||++.. ++. ..|..-+..+.++-+.
T Consensus 315 tIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD------Dktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~ 388 (406)
T KOG0295|consen 315 TIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCAD------DKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTA 388 (406)
T ss_pred eEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEec------CCcEEEEEeccceeeeccCCCcceeEEEecCCCC
Confidence 9999999999999999887 7888999999999999994 899999999654 442 2344456778887777
Q ss_pred CCCCCC
Q 020756 224 PDKFGD 229 (321)
Q Consensus 224 ~~~~~~ 229 (321)
+++.+.
T Consensus 389 p~VvTG 394 (406)
T KOG0295|consen 389 PYVVTG 394 (406)
T ss_pred ceEEec
Confidence 766654
No 79
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.9e-13 Score=117.95 Aligned_cols=204 Identities=11% Similarity=0.216 Sum_probs=140.7
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecc--cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee--
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFF--RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV-- 77 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f--~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v-- 77 (321)
|.-|.-+||-+.... .+-|....-| ...-.++.||+....+++.++-| |. |-+++. +..+..+
T Consensus 33 Gl~G~G~L~ile~~~-~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GD---------GS--Lrl~d~-~~~s~Pi~~ 99 (311)
T KOG0277|consen 33 GLAGNGRLFILEVTD-PKGIQECQSYDTEDGLFDVAWSENHENQVIAASGD---------GS--LRLFDL-TMPSKPIHK 99 (311)
T ss_pred ccccCceEEEEecCC-CCCeEEEEeeecccceeEeeecCCCcceEEEEecC---------ce--EEEecc-CCCCcchhH
Confidence 334444555555421 2334333333 45566899999999888876532 43 334442 2222222
Q ss_pred ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeC-CCceeEEe--CCcCeeeEEEcCC-CCeEEEEccCCCCCcEEEE
Q 020756 78 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPK-GKFLCLAGFGNLPGDMAFW 153 (321)
Q Consensus 78 ~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~~~~--~~~~~~~~~~sPd-G~~l~~~g~~n~~g~i~iw 153 (321)
-.+|+..|.++.|++..++..+. +.-|++|+||+. +.+.+.+| |..-|....|||. ++++++++ .|+.+.||
T Consensus 100 ~kEH~~EV~Svdwn~~~r~~~lt-sSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~S---gd~~l~lw 175 (311)
T KOG0277|consen 100 FKEHKREVYSVDWNTVRRRIFLT-SSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASAS---GDGTLRLW 175 (311)
T ss_pred HHhhhhheEEeccccccceeEEe-eccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEcc---CCceEEEE
Confidence 22488999999999976666555 478999999997 56677778 6777899999995 67778887 88999999
Q ss_pred ECCC-CeEEEeeeCC--CeeeEEEccC-CCEEEEEEcCCceeecCcEEEEeecCce--e--EEeccCceEEEEEecCCCC
Q 020756 154 DYVD-GKQLGTTRAE--CSVTSEWSPD-GRYFMTATTAPRLQIDNGIKIFHHNGSL--F--FKKMFDKLFQAEWKPVSPD 225 (321)
Q Consensus 154 D~~~-~~~i~~~~~~--~~~~~~wSpd-G~~l~t~~s~~rl~~d~~v~iw~~~g~~--l--~~~~~~~~~~~~w~P~~~~ 225 (321)
|++. ++.+. ++.| .+.++.|+.- -+.++|++ +|+.|++||+..-. + ..+|.-.|..+.|+|....
T Consensus 176 dvr~~gk~~~-i~ah~~Eil~cdw~ky~~~vl~Tg~------vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~ 248 (311)
T KOG0277|consen 176 DVRSPGKFMS-IEAHNSEILCCDWSKYNHNVLATGG------VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHAS 248 (311)
T ss_pred EecCCCceeE-EEeccceeEeecccccCCcEEEecC------CCceEEEEehhhccccceeecCCceEEEEEecCcchhh
Confidence 9874 55555 5555 7999999995 55555666 69999999995322 2 3345557889999998877
Q ss_pred CCCC
Q 020756 226 KFGD 229 (321)
Q Consensus 226 ~~~~ 229 (321)
++..
T Consensus 249 lLaS 252 (311)
T KOG0277|consen 249 LLAS 252 (311)
T ss_pred Hhhh
Confidence 7654
No 80
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=9.5e-13 Score=126.92 Aligned_cols=196 Identities=11% Similarity=0.039 Sum_probs=127.1
Q ss_pred ceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEE
Q 020756 20 PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAV 99 (321)
Q Consensus 20 ~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~ 99 (321)
..............+.|||||+.|+++... . +...||.++..++....+. ...+.+..+.|||||+.|++
T Consensus 190 ~~~~l~~~~~~~~~p~wSpDG~~la~~s~~----~-----~~~~l~~~~l~~g~~~~l~-~~~g~~~~~~~SpDG~~la~ 259 (430)
T PRK00178 190 RAVTLLQSREPILSPRWSPDGKRIAYVSFE----Q-----KRPRIFVQNLDTGRREQIT-NFEGLNGAPAWSPDGSKLAF 259 (430)
T ss_pred CceEEecCCCceeeeeECCCCCEEEEEEcC----C-----CCCEEEEEECCCCCEEEcc-CCCCCcCCeEECCCCCEEEE
Confidence 334444445566788999999999886421 1 2346888888766444443 23456668999999999987
Q ss_pred EEc-cCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEe-eeCCCeeeEEEc
Q 020756 100 VYG-FMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT-TRAECSVTSEWS 175 (321)
Q Consensus 100 ~~g-~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~-~~~~~~~~~~wS 175 (321)
... .....|.++|+.+.....+ +........|+|||+.|++.+..+....|+++|+.+++.... +.........||
T Consensus 260 ~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~S 339 (430)
T PRK00178 260 VLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLS 339 (430)
T ss_pred EEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEEC
Confidence 542 2234788899987766655 334455689999999999886433345788999887754322 223344567999
Q ss_pred cCCCEEEEEEcCCceeecCcEEEEeecCceeEEe-ccCceEEEEEecCCCCCCC
Q 020756 176 PDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-MFDKLFQAEWKPVSPDKFG 228 (321)
Q Consensus 176 pdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~-~~~~~~~~~w~P~~~~~~~ 228 (321)
|||++|+...... ....+.+||+.+...... .........|+|++..++-
T Consensus 340 pdg~~i~~~~~~~---~~~~l~~~dl~tg~~~~lt~~~~~~~p~~spdg~~i~~ 390 (430)
T PRK00178 340 ADGKTLVMVHRQD---GNFHVAAQDLQRGSVRILTDTSLDESPSVAPNGTMLIY 390 (430)
T ss_pred CCCCEEEEEEccC---CceEEEEEECCCCCEEEccCCCCCCCceECCCCCEEEE
Confidence 9999999887421 122467778755433111 1112235689999877663
No 81
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.1e-13 Score=129.92 Aligned_cols=198 Identities=11% Similarity=0.125 Sum_probs=151.3
Q ss_pred CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-eeeeecCCC
Q 020756 4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKE 82 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~~~v~l~~~ 82 (321)
+.+||||++.+ ...+.+...+..-...+.-+|.--+++... | |. .|.+++-.+.- -.++--.|+
T Consensus 76 D~~IrVfnynt---~ekV~~FeAH~DyIR~iavHPt~P~vLtsS--D-Dm---------~iKlW~we~~wa~~qtfeGH~ 140 (794)
T KOG0276|consen 76 DMQIRVFNYNT---GEKVKTFEAHSDYIRSIAVHPTLPYVLTSS--D-DM---------TIKLWDWENEWACEQTFEGHE 140 (794)
T ss_pred CceEEEEeccc---ceeeEEeeccccceeeeeecCCCCeEEecC--C-cc---------EEEEeeccCceeeeeEEcCcc
Confidence 56899999999 677777777777778888899888876642 1 11 12333333321 223333588
Q ss_pred CCeEEEEECc-CCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCC--eEEEEccCCCCCcEEEEECC
Q 020756 83 GPVHDVQWSY-SGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGK--FLCLAGFGNLPGDMAFWDYV 156 (321)
Q Consensus 83 ~~v~~~~wsP-~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~--~l~~~g~~n~~g~i~iwD~~ 156 (321)
..|.+++|+| |.+.|+.+ +.|+++++|.+. ..+.+++ |...+|++.|-|-|. +|++++ .|..|+|||.+
T Consensus 141 HyVMqv~fnPkD~ntFaS~--sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga---DD~tiKvWDyQ 215 (794)
T KOG0276|consen 141 HYVMQVAFNPKDPNTFASA--SLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA---DDLTIKVWDYQ 215 (794)
T ss_pred eEEEEEEecCCCccceeee--eccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC---CCceEEEeecc
Confidence 9999999999 56688885 779999999994 4466776 889999999998664 889988 89999999999
Q ss_pred CCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee---EEeccCceEEEEEecCCCCCC
Q 020756 157 DGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF---FKKMFDKLFQAEWKPVSPDKF 227 (321)
Q Consensus 157 ~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l---~~~~~~~~~~~~w~P~~~~~~ 227 (321)
+..|+.++++| ++..+.|+|.--.|++++ .|++++||+-....+ +....+.+|++.-.+....+.
T Consensus 216 tk~CV~TLeGHt~Nvs~v~fhp~lpiiisgs------EDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~ 285 (794)
T KOG0276|consen 216 TKSCVQTLEGHTNNVSFVFFHPELPIIISGS------EDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIA 285 (794)
T ss_pred hHHHHHHhhcccccceEEEecCCCcEEEEec------CCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEE
Confidence 99999999987 889999999999999999 699999999755433 334456777777766655443
No 82
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.2e-12 Score=126.21 Aligned_cols=200 Identities=13% Similarity=0.119 Sum_probs=127.8
Q ss_pred eEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCe
Q 020756 6 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV 85 (321)
Q Consensus 6 ~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v 85 (321)
.|.+|++.. ++ ......++.....+.|||||+.|++....+ |...||.++..+.....+. .+.+..
T Consensus 224 ~l~~~~l~~---g~-~~~l~~~~g~~~~~~~SpDG~~la~~~~~~---------g~~~Iy~~d~~~~~~~~lt-~~~~~~ 289 (430)
T PRK00178 224 RIFVQNLDT---GR-REQITNFEGLNGAPAWSPDGSKLAFVLSKD---------GNPEIYVMDLASRQLSRVT-NHPAID 289 (430)
T ss_pred EEEEEECCC---CC-EEEccCCCCCcCCeEECCCCCEEEEEEccC---------CCceEEEEECCCCCeEEcc-cCCCCc
Confidence 566677765 32 233343444455789999999998864321 3346899988776444443 334556
Q ss_pred EEEEECcCCCEEEEEEccC-CCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEE
Q 020756 86 HDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG 162 (321)
Q Consensus 86 ~~~~wsP~g~~l~~~~g~~-~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~ 162 (321)
..+.|+|||+.|++..... ...|.++|+.+.....+ .........|||||++|++....+....|++||+.+++...
T Consensus 290 ~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~ 369 (430)
T PRK00178 290 TEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI 369 (430)
T ss_pred CCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE
Confidence 6789999999998874321 23677788765544433 22233457899999999998743333468999998875433
Q ss_pred eeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE--eccCceEEEEEecC
Q 020756 163 TTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK--KMFDKLFQAEWKPV 222 (321)
Q Consensus 163 ~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~--~~~~~~~~~~w~P~ 222 (321)
...........|||||++|+.++... ....+.+++.+|..... .....+...+|+|.
T Consensus 370 lt~~~~~~~p~~spdg~~i~~~~~~~---g~~~l~~~~~~g~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 370 LTDTSLDESPSVAPNGTMLIYATRQQ---GRGVLMLVSINGRVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred ccCCCCCCCceECCCCCEEEEEEecC---CceEEEEEECCCCceEECcCCCCCcCCCccCCC
Confidence 22222333569999999999988421 12346677777765422 23346777888774
No 83
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.54 E-value=4.7e-13 Score=120.40 Aligned_cols=174 Identities=14% Similarity=0.217 Sum_probs=132.9
Q ss_pred CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756 3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE 82 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~ 82 (321)
.+..|++|++.+ +-++.+..-...-..-+.-+.||+.++... ..+.|..+-.....-..+-..|+
T Consensus 213 rD~tik~We~~t---g~cv~t~~~h~ewvr~v~v~~DGti~As~s------------~dqtl~vW~~~t~~~k~~lR~hE 277 (406)
T KOG0295|consen 213 RDNTIKAWECDT---GYCVKTFPGHSEWVRMVRVNQDGTIIASCS------------NDQTLRVWVVATKQCKAELREHE 277 (406)
T ss_pred cccceeEEeccc---ceeEEeccCchHhEEEEEecCCeeEEEecC------------CCceEEEEEeccchhhhhhhccc
Confidence 456789999988 677777666665555666677777766541 12234444333332233444689
Q ss_pred CCeEEEEECcCCC--------------EEEEEEccCCCeEEEEeC-CCceeEEe--CCcCeeeEEEcCCCCeEEEEccCC
Q 020756 83 GPVHDVQWSYSGS--------------EFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGN 145 (321)
Q Consensus 83 ~~v~~~~wsP~g~--------------~l~~~~g~~~~~i~i~d~-~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n 145 (321)
-+|.+++|.|... .+++. +..|++|++||+ .+..++++ |...|..++|+|.|+||+++.
T Consensus 278 h~vEci~wap~~~~~~i~~at~~~~~~~~l~s-~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~Sca--- 353 (406)
T KOG0295|consen 278 HPVECIAWAPESSYPSISEATGSTNGGQVLGS-GSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCA--- 353 (406)
T ss_pred cceEEEEecccccCcchhhccCCCCCccEEEe-ecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEe---
Confidence 9999999976432 23333 678999999999 46678888 788999999999999999999
Q ss_pred CCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756 146 LPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 201 (321)
Q Consensus 146 ~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~ 201 (321)
.|+++.+||+++++|+.+.+.| -++.++|..+--++++|+ +|..+++|..
T Consensus 354 DDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGs------Vdqt~KvwEc 405 (406)
T KOG0295|consen 354 DDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGS------VDQTVKVWEC 405 (406)
T ss_pred cCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEecc------ccceeeeeec
Confidence 9999999999999999999886 678899999999999999 7999999974
No 84
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.54 E-value=2.9e-13 Score=132.62 Aligned_cols=134 Identities=16% Similarity=0.298 Sum_probs=109.5
Q ss_pred CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe-CCcCeeeEEEcC-CCCeEEEEccCCCCCcEEEEECC
Q 020756 80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYV 156 (321)
Q Consensus 80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~-~~~~~~~~~~sP-dG~~l~~~g~~n~~g~i~iwD~~ 156 (321)
.|.+.|.|+.||-++ +|+. ..||.+++||++.. +.+..| |...|.|++|+| |.+|+++|+ +||.|+||++.
T Consensus 367 GHt~DILDlSWSKn~-fLLS--SSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnPvDDryFiSGS---LD~KvRiWsI~ 440 (712)
T KOG0283|consen 367 GHTADILDLSWSKNN-FLLS--SSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNPVDDRYFISGS---LDGKVRLWSIS 440 (712)
T ss_pred ccchhheecccccCC-eeEe--ccccccEEeecCCCcceeeEEecCCeeEEEEecccCCCcEeecc---cccceEEeecC
Confidence 478889999999876 4444 48999999999954 577788 899999999999 788999999 99999999997
Q ss_pred CCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe-----c------cCceEEEEEecCCC
Q 020756 157 DGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK-----M------FDKLFQAEWKPVSP 224 (321)
Q Consensus 157 ~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~-----~------~~~~~~~~w~P~~~ 224 (321)
..+.+.....+ .|+.++++|||++.+.|+ .++.+++|+..|..+... + ...|..+.+.|..+
T Consensus 441 d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt------~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~ 514 (712)
T KOG0283|consen 441 DKKVVDWNDLRDLITAVCYSPDGKGAVIGT------FNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDP 514 (712)
T ss_pred cCeeEeehhhhhhheeEEeccCCceEEEEE------eccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCC
Confidence 77766665555 789999999999999999 699999999977544111 1 12699999999766
Q ss_pred C
Q 020756 225 D 225 (321)
Q Consensus 225 ~ 225 (321)
.
T Consensus 515 ~ 515 (712)
T KOG0283|consen 515 D 515 (712)
T ss_pred C
Confidence 3
No 85
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.54 E-value=5.1e-13 Score=122.56 Aligned_cols=164 Identities=15% Similarity=0.268 Sum_probs=123.5
Q ss_pred CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC-CC
Q 020756 4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KE 82 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~-~~ 82 (321)
...|+||..|. ..+.....-+...+..+.-+|.|+|++... +..+++ ++.+. .|..-..+.-+ .+
T Consensus 282 d~~i~vws~~~---~s~~~~~~~h~~~V~~ls~h~tgeYllsAs-------~d~~w~---Fsd~~-~g~~lt~vs~~~s~ 347 (506)
T KOG0289|consen 282 DEIIRVWSVPL---SSEPTSSRPHEEPVTGLSLHPTGEYLLSAS-------NDGTWA---FSDIS-SGSQLTVVSDETSD 347 (506)
T ss_pred cceEEeecccc---ccCccccccccccceeeeeccCCcEEEEec-------CCceEE---EEEcc-CCcEEEEEeecccc
Confidence 45799999998 555555556677788889999999998742 223322 22222 22222333321 12
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 159 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~ 159 (321)
-.+++.+|+|||-.|++ |.+|+.+.|||++. ..+..| |.++|..+.|+-+|=+|+++. .|+.|.+||++..+
T Consensus 348 v~~ts~~fHpDgLifgt--gt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a---dd~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 348 VEYTSAAFHPDGLIFGT--GTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA---DDGSVKLWDLRKLK 422 (506)
T ss_pred ceeEEeeEcCCceEEec--cCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe---cCCeEEEEEehhhc
Confidence 35899999999977766 89999999999964 356666 899999999999999999998 88999999999887
Q ss_pred EEEeeeCC---CeeeEEEccCCCEEEEEEc
Q 020756 160 QLGTTRAE---CSVTSEWSPDGRYFMTATT 186 (321)
Q Consensus 160 ~i~~~~~~---~~~~~~wSpdG~~l~t~~s 186 (321)
.+.++.-. .+..++|.+.|.||+.+++
T Consensus 423 n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~ 452 (506)
T KOG0289|consen 423 NFKTIQLDEKKEVNSLSFDQSGTYLGIAGS 452 (506)
T ss_pred ccceeeccccccceeEEEcCCCCeEEeecc
Confidence 76666554 5889999999999999874
No 86
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.54 E-value=1.4e-13 Score=121.70 Aligned_cols=195 Identities=11% Similarity=0.166 Sum_probs=144.2
Q ss_pred ceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcC-------------CCceee-----eecCC
Q 020756 20 PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD-------------GTHEGL-----VPLRK 81 (321)
Q Consensus 20 ~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~-------------g~~~~~-----v~l~~ 81 (321)
+....+.+|.....-.||+||..++.-. .|.+ |.++++. |....+ ...+|
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGs---aD~S---------IKildvermlaks~~~em~~~~~qa~hPvIRTlYDH 171 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGS---ADAS---------IKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDH 171 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccC---Ccce---------EEEeehhhhhhhcchhhhccCCcccCCceEeehhhc
Confidence 4466677787777889999999887642 1211 2333322 111111 12358
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc----eeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR----PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 156 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~----~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~ 156 (321)
-++|+++.|+|....|+. |..|+++++||...- ....| ...++.++.|+|.|.||+++. ....+++||++
T Consensus 172 ~devn~l~FHPre~ILiS--~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT---dHp~~rlYdv~ 246 (430)
T KOG0640|consen 172 VDEVNDLDFHPRETILIS--GSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT---DHPTLRLYDVN 246 (430)
T ss_pred cCcccceeecchhheEEe--ccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec---CCCceeEEecc
Confidence 899999999999887776 788999999998422 23334 567899999999999999998 67799999999
Q ss_pred CCeEEEeeeC---C--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEe-ecCceeEE---e-ccCceEEEEEecCCCCC
Q 020756 157 DGKQLGTTRA---E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH-HNGSLFFK---K-MFDKLFQAEWKPVSPDK 226 (321)
Q Consensus 157 ~~~~i~~~~~---~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~-~~g~~l~~---~-~~~~~~~~~w~P~~~~~ 226 (321)
+.+|...-.. | .++++.+|+.|+..+|++ .|+.|+||| ++++++.. . .-.+|++..|.-++.++
T Consensus 247 T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaS------kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyi 320 (430)
T KOG0640|consen 247 TYQCFVSANPDDQHTGAITQVRYSSTGSLYVTAS------KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYI 320 (430)
T ss_pred ceeEeeecCcccccccceeEEEecCCccEEEEec------cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEE
Confidence 9988755321 2 788999999999999999 599999999 57777622 2 33589999999999999
Q ss_pred CCCcc-hhhhcc
Q 020756 227 FGDIS-ELIKSV 237 (321)
Q Consensus 227 ~~~~~-~~~~~~ 237 (321)
++... .+.+.|
T Consensus 321 LsSG~DS~vkLW 332 (430)
T KOG0640|consen 321 LSSGKDSTVKLW 332 (430)
T ss_pred eecCCcceeeee
Confidence 98863 333444
No 87
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=1.4e-13 Score=135.40 Aligned_cols=187 Identities=15% Similarity=0.193 Sum_probs=146.1
Q ss_pred ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee-eecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 020756 30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL-VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA 108 (321)
Q Consensus 30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~-v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i 108 (321)
..-.+.|+|.--.|++..++ |..+||.... . ... -..+|+|||..+.|+|++..|+. |..|.+|
T Consensus 11 RvKglsFHP~rPwILtslHs----------G~IQlWDYRM--~-tli~rFdeHdGpVRgv~FH~~qplFVS--GGDDykI 75 (1202)
T KOG0292|consen 11 RVKGLSFHPKRPWILTSLHS----------GVIQLWDYRM--G-TLIDRFDEHDGPVRGVDFHPTQPLFVS--GGDDYKI 75 (1202)
T ss_pred cccceecCCCCCEEEEeecC----------ceeeeehhhh--h-hHHhhhhccCCccceeeecCCCCeEEe--cCCccEE
Confidence 45578899999998886432 4444442211 1 111 11259999999999999988877 6778999
Q ss_pred EEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEE
Q 020756 109 TIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMT 183 (321)
Q Consensus 109 ~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t 183 (321)
++|+.+.. .++++ |...+.++.|++.--.|++++ .|.+|+||+..+++++..+.+| .+.+..|+|....|++
T Consensus 76 kVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSAS---DDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVS 152 (1202)
T KOG0292|consen 76 KVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSAS---DDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVS 152 (1202)
T ss_pred EEEecccceehhhhccccceeEEeeccCCCceEEEcc---CCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEE
Confidence 99999654 56666 788999999999999999999 9999999999999999999987 7889999999999999
Q ss_pred EEcCCceeecCcEEEEeecCc--------------------------------eeEEeccCceEEEEEecCCCCCCCCc-
Q 020756 184 ATTAPRLQIDNGIKIFHHNGS--------------------------------LFFKKMFDKLFQAEWKPVSPDKFGDI- 230 (321)
Q Consensus 184 ~~s~~rl~~d~~v~iw~~~g~--------------------------------~l~~~~~~~~~~~~w~P~~~~~~~~~- 230 (321)
++ .|.+|++||++|- .+..+|...|.-++|+|.-|-+.+..
T Consensus 153 aS------LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D 226 (1202)
T KOG0292|consen 153 AS------LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD 226 (1202)
T ss_pred ec------ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC
Confidence 99 5999999999651 12445666788899999999888875
Q ss_pred chhhhccccc
Q 020756 231 SELIKSVGSL 240 (321)
Q Consensus 231 ~~~~~~~~~~ 240 (321)
|-..+.|.+.
T Consensus 227 DRqVKlWrmn 236 (1202)
T KOG0292|consen 227 DRQVKLWRMN 236 (1202)
T ss_pred cceeeEEEec
Confidence 3345566443
No 88
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.53 E-value=2e-12 Score=123.79 Aligned_cols=186 Identities=17% Similarity=0.194 Sum_probs=123.6
Q ss_pred ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc-CC
Q 020756 27 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF-MP 105 (321)
Q Consensus 27 f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~-~~ 105 (321)
.......+.|||+|++|++....+ +...||.+++.++....+. ...+.+..+.|+|||+.|++.... ..
T Consensus 188 ~~~~~~~p~~Spdg~~la~~~~~~---------~~~~i~v~d~~~g~~~~~~-~~~~~~~~~~~spDg~~l~~~~~~~~~ 257 (417)
T TIGR02800 188 SREPILSPAWSPDGQKLAYVSFES---------GKPEIYVQDLATGQREKVA-SFPGMNGAPAFSPDGSKLAVSLSKDGN 257 (417)
T ss_pred CCCceecccCCCCCCEEEEEEcCC---------CCcEEEEEECCCCCEEEee-cCCCCccceEECCCCCEEEEEECCCCC
Confidence 334467789999999998864211 2345888888765333333 345667789999999998875322 22
Q ss_pred CeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEee-eCCCeeeEEEccCCCEEE
Q 020756 106 ASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT-RAECSVTSEWSPDGRYFM 182 (321)
Q Consensus 106 ~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~-~~~~~~~~~wSpdG~~l~ 182 (321)
..|.+||+.+.....+ +........|+|||+.|++.+.......|+++|+.+++..... .......+.|||||++|+
T Consensus 258 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~ 337 (417)
T TIGR02800 258 PDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIA 337 (417)
T ss_pred ccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEE
Confidence 3788899877666555 3334457899999999988763333347999999877543322 233667789999999999
Q ss_pred EEEcCCceeecC---cEEEEeecCceeEEe-ccCceEEEEEecCCCCCCC
Q 020756 183 TATTAPRLQIDN---GIKIFHHNGSLFFKK-MFDKLFQAEWKPVSPDKFG 228 (321)
Q Consensus 183 t~~s~~rl~~d~---~v~iw~~~g~~l~~~-~~~~~~~~~w~P~~~~~~~ 228 (321)
.+.. +. .+.+||+.+...... .........|+|++..++-
T Consensus 338 ~~~~------~~~~~~i~~~d~~~~~~~~l~~~~~~~~p~~spdg~~l~~ 381 (417)
T TIGR02800 338 FVHR------EGGGFNIAVMDLDGGGERVLTDTGLDESPSFAPNGRMILY 381 (417)
T ss_pred EEEc------cCCceEEEEEeCCCCCeEEccCCCCCCCceECCCCCEEEE
Confidence 9884 33 577777755433211 1122345689998876654
No 89
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.53 E-value=1.6e-12 Score=112.89 Aligned_cols=213 Identities=13% Similarity=0.165 Sum_probs=155.0
Q ss_pred CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCC----Cce-eee
Q 020756 3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG----THE-GLV 77 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g----~~~-~~v 77 (321)
++.+++||++++ ++++++..+ ++.+..+.|+.+|+++++++...+ | |.+...++.+.... ..+ ...
T Consensus 72 AD~t~kLWDv~t---Gk~la~~k~-~~~Vk~~~F~~~gn~~l~~tD~~m---g--~~~~v~~fdi~~~~~~~~s~ep~~k 142 (327)
T KOG0643|consen 72 ADQTAKLWDVET---GKQLATWKT-NSPVKRVDFSFGGNLILASTDKQM---G--YTCFVSVFDIRDDSSDIDSEEPYLK 142 (327)
T ss_pred ccceeEEEEcCC---CcEEEEeec-CCeeEEEeeccCCcEEEEEehhhc---C--cceEEEEEEccCChhhhcccCceEE
Confidence 466899999999 899988885 567778999999999988743211 2 23555566554322 112 222
Q ss_pred ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-e-eE--EeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEE
Q 020756 78 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-P-IL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW 153 (321)
Q Consensus 78 ~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~-~~--~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw 153 (321)
-..++..+..+-|+|-++.|+. |..++.|.+||++.. . +. ..|...++.+.+|||..++++++ .|.+-++|
T Consensus 143 I~t~~skit~a~Wg~l~~~ii~--Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s---~Dttakl~ 217 (327)
T KOG0643|consen 143 IPTPDSKITSALWGPLGETIIA--GHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGS---KDTTAKLV 217 (327)
T ss_pred ecCCccceeeeeecccCCEEEE--ecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecc---cCccceee
Confidence 2346788999999999998887 677899999999753 2 22 23788999999999999999999 89999999
Q ss_pred ECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceee-------c-CcEEEEee-cCcee--EEeccCceEEEEEec
Q 020756 154 DYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQI-------D-NGIKIFHH-NGSLF--FKKMFDKLFQAEWKP 221 (321)
Q Consensus 154 D~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~-------d-~~v~iw~~-~g~~l--~~~~~~~~~~~~w~P 221 (321)
|+.+.+.+.++... .+.+.+.+|.-.+++.++..--+-+ . -.-+.||+ ..+.+ .++|+..+..++++|
T Consensus 218 D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP 297 (327)
T KOG0643|consen 218 DVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP 297 (327)
T ss_pred eccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC
Confidence 99999999998876 7788999999888887773110000 0 11222332 11222 678999999999999
Q ss_pred CCCCCCCC
Q 020756 222 VSPDKFGD 229 (321)
Q Consensus 222 ~~~~~~~~ 229 (321)
++....+.
T Consensus 298 dGksYsSG 305 (327)
T KOG0643|consen 298 DGKSYSSG 305 (327)
T ss_pred CCcccccC
Confidence 98766554
No 90
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.53 E-value=1.7e-12 Score=116.95 Aligned_cols=163 Identities=18% Similarity=0.258 Sum_probs=124.0
Q ss_pred eeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeE-EEEEcCCCceeeeec-CCCCCeEEEEECcCCCEEEEE
Q 020756 23 RRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKL-NYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVV 100 (321)
Q Consensus 23 ~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l-~~l~~~g~~~~~v~l-~~~~~v~~~~wsP~g~~l~~~ 100 (321)
+...++.+...+.-+|+ ..+++.- |++.+ |+++...+ +....+ .|++.|.++.||-||.+||+
T Consensus 59 tF~~H~~svFavsl~P~-~~l~aTG------------GgDD~AflW~~~~g-e~~~eltgHKDSVt~~~FshdgtlLAT- 123 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPN-NNLVATG------------GGDDLAFLWDISTG-EFAGELTGHKDSVTCCSFSHDGTLLAT- 123 (399)
T ss_pred ehhhcCCceEEEEeCCC-CceEEec------------CCCceEEEEEccCC-cceeEecCCCCceEEEEEccCceEEEe-
Confidence 33445678888888994 4444421 33333 44444333 333333 58999999999999999998
Q ss_pred EccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEc
Q 020756 101 YGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWS 175 (321)
Q Consensus 101 ~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wS 175 (321)
|+|++++.||....+ ....+ .-..+..+.|+|-+.+|+.++ .||.|+.|.+.++.....+.+| .+++=+|.
T Consensus 124 -GdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~---~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~ 199 (399)
T KOG0296|consen 124 -GDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGS---TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFI 199 (399)
T ss_pred -cCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeec---CCCcEEEEECCCcceeeEecCCCCCccccccc
Confidence 899999999998543 33444 456788899999999999998 9999999999987777777777 56777999
Q ss_pred cCCCEEEEEEcCCceeecCcEEEEee-cCceeEEec
Q 020756 176 PDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKM 210 (321)
Q Consensus 176 pdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~~ 210 (321)
|||+.++++.. |+.|++|+. +|+.++...
T Consensus 200 pdGKr~~tgy~------dgti~~Wn~ktg~p~~~~~ 229 (399)
T KOG0296|consen 200 PDGKRILTGYD------DGTIIVWNPKTGQPLHKIT 229 (399)
T ss_pred CCCceEEEEec------CceEEEEecCCCceeEEec
Confidence 99999999995 999999998 677776554
No 91
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=2.5e-12 Score=123.32 Aligned_cols=196 Identities=10% Similarity=0.053 Sum_probs=125.2
Q ss_pred eEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCe
Q 020756 6 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV 85 (321)
Q Consensus 6 ~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v 85 (321)
.|-++++.+ ......+.++.......|||||+.|++.... . |...||.++..++...+++ ...+..
T Consensus 214 ~Iyv~dl~t----g~~~~lt~~~g~~~~~~~SPDG~~la~~~~~----~-----g~~~Iy~~dl~~g~~~~LT-~~~~~d 279 (419)
T PRK04043 214 TLYKYNLYT----GKKEKIASSQGMLVVSDVSKDGSKLLLTMAP----K-----GQPDIYLYDTNTKTLTQIT-NYPGID 279 (419)
T ss_pred EEEEEECCC----CcEEEEecCCCcEEeeEECCCCCEEEEEEcc----C-----CCcEEEEEECCCCcEEEcc-cCCCcc
Confidence 566666655 3334444466556678899999999887532 1 3457999998777555554 223334
Q ss_pred EEEEECcCCCEEEEEEccCCC-eEEEEeCCCceeEEeC-CcCeeeEEEcCCCCeEEEEccCC------CCCcEEEEECCC
Q 020756 86 HDVQWSYSGSEFAVVYGFMPA-SATIFNKKCRPILELG-SGPYNTVRWNPKGKFLCLAGFGN------LPGDMAFWDYVD 157 (321)
Q Consensus 86 ~~~~wsP~g~~l~~~~g~~~~-~i~i~d~~~~~~~~~~-~~~~~~~~~sPdG~~l~~~g~~n------~~g~i~iwD~~~ 157 (321)
....|+|||+.|+++...... .|.+.|+.+.....+- .+..+ ..|||||++|++....+ ....|++.|+.+
T Consensus 280 ~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~-~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~ 358 (419)
T PRK04043 280 VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNN-SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNS 358 (419)
T ss_pred CccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcC-ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCC
Confidence 567999999999998643222 7888888766554442 22223 59999999999987432 114799999988
Q ss_pred CeEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe--ccCceEEEEE
Q 020756 158 GKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MFDKLFQAEW 219 (321)
Q Consensus 158 ~~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~--~~~~~~~~~w 219 (321)
+...............|||||+.|+..+.. +....+.+.+++|...... ....+.+.+|
T Consensus 359 g~~~~LT~~~~~~~p~~SPDG~~I~f~~~~---~~~~~L~~~~l~g~~~~~l~~~~g~~~~p~W 419 (419)
T PRK04043 359 DYIRRLTANGVNQFPRFSSDGGSIMFIKYL---GNQSALGIIRLNYNKSFLFPLKVGKIQSIDW 419 (419)
T ss_pred CCeEECCCCCCcCCeEECCCCCEEEEEEcc---CCcEEEEEEecCCCeeEEeecCCCccCCCCC
Confidence 754332222233358999999999998752 1223466777788644322 2334444444
No 92
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.52 E-value=2.6e-14 Score=126.82 Aligned_cols=165 Identities=13% Similarity=0.159 Sum_probs=125.2
Q ss_pred ceeeeeccc-CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee-------eecCCCCCeEEEEEC
Q 020756 20 PLARRSFFR-CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL-------VPLRKEGPVHDVQWS 91 (321)
Q Consensus 20 ~i~~~~~f~-~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~-------v~l~~~~~v~~~~ws 91 (321)
...+..|.+ .-.-...|||||+||+... +| |=..+|... .|.-.+. -..-++++|.++.||
T Consensus 204 l~r~IKFg~KSh~EcA~FSPDgqyLvsgS---vD-------GFiEVWny~-~GKlrKDLkYQAqd~fMMmd~aVlci~FS 272 (508)
T KOG0275|consen 204 LARSIKFGQKSHVECARFSPDGQYLVSGS---VD-------GFIEVWNYT-TGKLRKDLKYQAQDNFMMMDDAVLCISFS 272 (508)
T ss_pred hhhheecccccchhheeeCCCCceEeecc---cc-------ceeeeehhc-cchhhhhhhhhhhcceeecccceEEEeec
Confidence 345556653 3333457999999997642 11 211222221 1110110 112368999999999
Q ss_pred cCCCEEEEEEccCCCeEEEEeCC-CceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC
Q 020756 92 YSGSEFAVVYGFMPASATIFNKK-CRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE 167 (321)
Q Consensus 92 P~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~ 167 (321)
.|...++. |..|++|++|-+. +..+..| |...+.++.||-|+..|++++ .|.++++.-+++|+++..+.+|
T Consensus 273 RDsEMlAs--GsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~s---fD~tvRiHGlKSGK~LKEfrGH 347 (508)
T KOG0275|consen 273 RDSEMLAS--GSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSAS---FDQTVRIHGLKSGKCLKEFRGH 347 (508)
T ss_pred ccHHHhhc--cCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccc---ccceEEEeccccchhHHHhcCc
Confidence 99999988 8899999999984 4566666 788999999999999999999 8889999999999999999998
Q ss_pred --CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee
Q 020756 168 --CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF 206 (321)
Q Consensus 168 --~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l 206 (321)
.++...|++||.+|+++++ |+++++|+. +++++
T Consensus 348 sSyvn~a~ft~dG~~iisaSs------DgtvkvW~~KtteC~ 383 (508)
T KOG0275|consen 348 SSYVNEATFTDDGHHIISASS------DGTVKVWHGKTTECL 383 (508)
T ss_pred cccccceEEcCCCCeEEEecC------CccEEEecCcchhhh
Confidence 6788999999999999997 999999998 45555
No 93
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.51 E-value=2.4e-13 Score=120.17 Aligned_cols=184 Identities=18% Similarity=0.345 Sum_probs=132.5
Q ss_pred CCCceEEEEEcCC-------------cCCCCceeeeecc--cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEE
Q 020756 2 GSPASVQIYACGK-------------DLQSQPLARRSFF--RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNY 66 (321)
Q Consensus 2 g~p~~v~v~~~~~-------------~~~~~~i~~~~~f--~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~ 66 (321)
+.+++|+|++++. ....+.-.-++++ -.++..+.|+|..+.|+..+ .| +...||.
T Consensus 131 saD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~s---rD-------~tvKlFD 200 (430)
T KOG0640|consen 131 SADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGS---RD-------NTVKLFD 200 (430)
T ss_pred CCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEEecc---CC-------CeEEEEe
Confidence 4678999999982 0011112234555 35677899999977765532 12 2223343
Q ss_pred EEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEE------eCCcCeeeEEEcCCCCeEEE
Q 020756 67 LTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE------LGSGPYNTVRWNPKGKFLCL 140 (321)
Q Consensus 67 l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~------~~~~~~~~~~~sPdG~~l~~ 140 (321)
+.-.........+....+|.++.|+|.|+++++ |.....+++||+.+-+-+. -|.+.++++.||+.|++-++
T Consensus 201 fsK~saKrA~K~~qd~~~vrsiSfHPsGefllv--gTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvT 278 (430)
T KOG0640|consen 201 FSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLV--GTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVT 278 (430)
T ss_pred cccHHHHHHHHHhhccceeeeEeecCCCceEEE--ecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEE
Confidence 322111111112234679999999999999888 5656699999997644332 26788999999999999999
Q ss_pred EccCCCCCcEEEEECCCCeEEEeeeC-C---CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee
Q 020756 141 AGFGNLPGDMAFWDYVDGKQLGTTRA-E---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF 206 (321)
Q Consensus 141 ~g~~n~~g~i~iwD~~~~~~i~~~~~-~---~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l 206 (321)
++ .||.|+|||--+++|+.++.. | .+.+..|..+|+||++++ .|..++||.+ +|+.+
T Consensus 279 aS---kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG------~DS~vkLWEi~t~R~l 340 (430)
T KOG0640|consen 279 AS---KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG------KDSTVKLWEISTGRML 340 (430)
T ss_pred ec---cCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC------CcceeeeeeecCCceE
Confidence 99 999999999889999988764 3 678899999999999999 5999999999 45555
No 94
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=6.2e-12 Score=120.66 Aligned_cols=188 Identities=7% Similarity=-0.003 Sum_probs=120.4
Q ss_pred ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc-CCCeE
Q 020756 30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF-MPASA 108 (321)
Q Consensus 30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~-~~~~i 108 (321)
-.....|||||+.+++.++.+. +...||.++..++....+. ...+.+....|||||+.+++.... ....|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~--------~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~I 259 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGE--------RKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDI 259 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccC--------CCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEE
Confidence 5668999999998555543211 2346899998776555554 356667789999999998876432 23478
Q ss_pred EEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCCCeeeEEEccCCCEEEEEEc
Q 020756 109 TIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATT 186 (321)
Q Consensus 109 ~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~t~~s 186 (321)
.++|+.+.....+ +........|+|||+.|++.+-.....+|+++|+.+++......... ....|||||++|+....
T Consensus 260 y~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-~~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 260 YLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-NNSSVSTYKNYIVYSSR 338 (419)
T ss_pred EEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC-cCceECCCCCEEEEEEc
Confidence 8889877666555 22223457899999999998733233589999998875533322221 23589999999998874
Q ss_pred CCcee---ecCcEEEEeecCceeEEecc-CceEEEEEecCCCCCC
Q 020756 187 APRLQ---IDNGIKIFHHNGSLFFKKMF-DKLFQAEWKPVSPDKF 227 (321)
Q Consensus 187 ~~rl~---~d~~v~iw~~~g~~l~~~~~-~~~~~~~w~P~~~~~~ 227 (321)
...-. ....+.+.++.+........ .......|+|++..++
T Consensus 339 ~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~~~~p~~SPDG~~I~ 383 (419)
T PRK04043 339 ETNNEFGKNTFNLYLISTNSDYIRRLTANGVNQFPRFSSDGGSIM 383 (419)
T ss_pred CCCcccCCCCcEEEEEECCCCCeEECCCCCCcCCeEECCCCCEEE
Confidence 21000 01346666665543322111 1223589999988665
No 95
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.51 E-value=1e-13 Score=134.74 Aligned_cols=181 Identities=14% Similarity=0.244 Sum_probs=130.5
Q ss_pred ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee--eecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 020756 30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL--VPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS 107 (321)
Q Consensus 30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~--v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~ 107 (321)
...+++|+..-..+++.+++ .|...+|.|...+. .++ +.-.|+..++.+.|++.--.+++. |..|+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~---------nG~i~vWdlnk~~r-nk~l~~f~EH~Rs~~~ldfh~tep~iliS-GSQDg~ 157 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCST---------NGVISVWDLNKSIR-NKLLTVFNEHERSANKLDFHSTEPNILIS-GSQDGT 157 (839)
T ss_pred ehhhcccccchhhhheeecC---------CCcEEEEecCcccc-chhhhHhhhhccceeeeeeccCCccEEEe-cCCCce
Confidence 34577898655555555432 15555666655433 333 333589999999999987777665 889999
Q ss_pred EEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC-eEEEeeeCC--CeeeEEEccCCCEE
Q 020756 108 ATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYF 181 (321)
Q Consensus 108 i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~-~~i~~~~~~--~~~~~~wSpdG~~l 181 (321)
|++||++.+ ...++ ....+..+.|+|.-.+.+++++ ..|.+.+||++.- ++...+.+| .+.++.|+|++.||
T Consensus 158 vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~--dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~l 235 (839)
T KOG0269|consen 158 VKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH--DSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWL 235 (839)
T ss_pred EEEEeeecccccccccccchhhhceeeccCCCceEEEec--CCceEEEeeccCchhHHHHhhcccCceEEEeecCCCcee
Confidence 999999654 33333 4567889999996554444443 5599999999854 566667776 78899999999999
Q ss_pred EEEEcCCceeecCcEEEEeecCcee----EEeccCceEEEEEecCCCCCCCC
Q 020756 182 MTATTAPRLQIDNGIKIFHHNGSLF----FKKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 182 ~t~~s~~rl~~d~~v~iw~~~g~~l----~~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
||++ .|..++||+.++... .......|..+.|+|..++.+..
T Consensus 236 ATGG------RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAt 281 (839)
T KOG0269|consen 236 ATGG------RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLAT 281 (839)
T ss_pred eecC------CCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhh
Confidence 9999 599999999975433 33344688899999988866643
No 96
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.50 E-value=6.1e-13 Score=129.01 Aligned_cols=182 Identities=13% Similarity=0.212 Sum_probs=140.2
Q ss_pred CCCceEEEEEcCCcCC--CCc---e---eeeec-ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC
Q 020756 2 GSPASVQIYACGKDLQ--SQP---L---ARRSF-FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT 72 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~--~~~---i---~~~~~-f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~ 72 (321)
|++-.|++|+...-.. +.. + .++++ +..+...+..||||.+|++.. .|.+-+.||-.+--+++++
T Consensus 473 saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL---LdnTVkVyflDtlKFflsL--- 546 (888)
T KOG0306|consen 473 SADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL---LDNTVKVYFLDTLKFFLSL--- 546 (888)
T ss_pred cCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe---ccCeEEEEEecceeeeeee---
Confidence 5677899998875211 111 0 11221 456888999999999999853 3444444442222222222
Q ss_pred ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCc
Q 020756 73 HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGD 149 (321)
Q Consensus 73 ~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~ 149 (321)
..|.-||.++..|||++.++++ ..|..+++|-++ |+.-.+| |...+.++.|-|+..++.++| .|+.
T Consensus 547 ------YGHkLPV~smDIS~DSklivTg--SADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~g---KD~k 615 (888)
T KOG0306|consen 547 ------YGHKLPVLSMDISPDSKLIVTG--SADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCG---KDGK 615 (888)
T ss_pred ------cccccceeEEeccCCcCeEEec--cCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEec---Ccce
Confidence 2488999999999999999984 678999999885 3445555 788999999999999999999 9999
Q ss_pred EEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee
Q 020756 150 MAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF 206 (321)
Q Consensus 150 i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l 206 (321)
|+-||-++.+++.++.+| .+.+++.+|+|.|+++++. |..+++|.-+-+.+
T Consensus 616 vKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~sh------D~sIRlwE~tde~~ 668 (888)
T KOG0306|consen 616 VKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSH------DKSIRLWERTDEIL 668 (888)
T ss_pred EEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccC------CceeEeeeccCcce
Confidence 999999999999999987 8999999999999999995 99999999876655
No 97
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.50 E-value=1.1e-13 Score=135.66 Aligned_cols=136 Identities=14% Similarity=0.297 Sum_probs=111.2
Q ss_pred CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC--------------------------------------------
Q 020756 80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-------------------------------------------- 115 (321)
Q Consensus 80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-------------------------------------------- 115 (321)
.|++.|-++.||+||++||+ ++.|+.|+||.+..
T Consensus 265 ah~gaIw~mKFS~DGKyLAs--aGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~ 342 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLAS--AGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKG 342 (712)
T ss_pred ccCCcEEEEEeCCCCceeee--cCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccc
Confidence 58999999999999999999 58899999995422
Q ss_pred -----------------ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-CeeeEEEc
Q 020756 116 -----------------RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWS 175 (321)
Q Consensus 116 -----------------~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-~~~~~~wS 175 (321)
+++..| |.+.|-.+.||-+ .+|++++ +|.+|+||++...+|++.|.+. .||+++|+
T Consensus 343 ~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSS---MDKTVRLWh~~~~~CL~~F~HndfVTcVaFn 418 (712)
T KOG0283|consen 343 SQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSS---MDKTVRLWHPGRKECLKVFSHNDFVTCVAFN 418 (712)
T ss_pred cCCccccCCCccccccccchhhhhccchhheecccccC-CeeEecc---ccccEEeecCCCcceeeEEecCCeeEEEEec
Confidence 011112 4556678899964 4888888 9999999999999999999987 79999999
Q ss_pred c-CCCEEEEEEcCCceeecCcEEEEeecCcee-EE-eccCceEEEEEecCCCCCC
Q 020756 176 P-DGRYFMTATTAPRLQIDNGIKIFHHNGSLF-FK-KMFDKLFQAEWKPVSPDKF 227 (321)
Q Consensus 176 p-dG~~l~t~~s~~rl~~d~~v~iw~~~g~~l-~~-~~~~~~~~~~w~P~~~~~~ 227 (321)
| |.+||++|+ .|+.++||++....+ +- .-.+-|..++++|++.+.+
T Consensus 419 PvDDryFiSGS------LD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~av 467 (712)
T KOG0283|consen 419 PVDDRYFISGS------LDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAV 467 (712)
T ss_pred ccCCCcEeecc------cccceEEeecCcCeeEeehhhhhhheeEEeccCCceEE
Confidence 9 899999999 599999999977666 22 2336789999999987544
No 98
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=6.4e-13 Score=114.09 Aligned_cols=206 Identities=17% Similarity=0.250 Sum_probs=149.0
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCC--CCCeeEEEEEecccCCCceeecceeEEEEEcCCC-ceee-e
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR--GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGL-V 77 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp--~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-~~~~-v 77 (321)
+.++.|+||.+.+..+.+.+..+.-....+-++.|-. -|+.|+.+ +|.|. +.++.-.++ -.+. .
T Consensus 30 sSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLASc----------sYDgk--VIiWke~~g~w~k~~e 97 (299)
T KOG1332|consen 30 SSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASC----------SYDGK--VIIWKEENGRWTKAYE 97 (299)
T ss_pred cCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEe----------ecCce--EEEEecCCCchhhhhh
Confidence 3578999999998432367888999999999999976 67777664 34443 333332222 1111 1
Q ss_pred ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc------eeEEeCCcCeeeEEEcCC---C-----------Ce
Q 020756 78 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR------PILELGSGPYNTVRWNPK---G-----------KF 137 (321)
Q Consensus 78 ~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~------~~~~~~~~~~~~~~~sPd---G-----------~~ 137 (321)
--.|+..|++++|.|.+--|.++++..|+.|.|++.+.. .+..-|.-.+|++.|.|- | +.
T Consensus 98 ~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~kr 177 (299)
T KOG1332|consen 98 HAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKR 177 (299)
T ss_pred hhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccce
Confidence 123789999999999877666666788999999987543 223338889999999997 6 56
Q ss_pred EEEEccCCCCCcEEEEECCCC--eEEEeeeCC--CeeeEEEccCC----CEEEEEEcCCceeecCcEEEEeecCce----
Q 020756 138 LCLAGFGNLPGDMAFWDYVDG--KQLGTTRAE--CSVTSEWSPDG----RYFMTATTAPRLQIDNGIKIFHHNGSL---- 205 (321)
Q Consensus 138 l~~~g~~n~~g~i~iwD~~~~--~~i~~~~~~--~~~~~~wSpdG----~~l~t~~s~~rl~~d~~v~iw~~~g~~---- 205 (321)
|+++| .|..|+||+.+++ +.-.+++.| .+.+++|+|.- .+||+++ .|+++.||....+.
T Consensus 178 lvSgG---cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~S------qDg~viIwt~~~e~e~wk 248 (299)
T KOG1332|consen 178 LVSGG---CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCS------QDGTVIIWTKDEEYEPWK 248 (299)
T ss_pred eeccC---CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEec------CCCcEEEEEecCccCccc
Confidence 89998 9999999999875 344456666 67889999963 4577777 69999999986431
Q ss_pred --eEEeccCceEEEEEecCCCCCCC
Q 020756 206 --FFKKMFDKLFQAEWKPVSPDKFG 228 (321)
Q Consensus 206 --l~~~~~~~~~~~~w~P~~~~~~~ 228 (321)
+.+.-...+|.++|++.+..+.-
T Consensus 249 ~tll~~f~~~~w~vSWS~sGn~LaV 273 (299)
T KOG1332|consen 249 KTLLEEFPDVVWRVSWSLSGNILAV 273 (299)
T ss_pred ccccccCCcceEEEEEeccccEEEE
Confidence 23334567999999998765553
No 99
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.49 E-value=1.2e-13 Score=128.00 Aligned_cols=191 Identities=15% Similarity=0.202 Sum_probs=141.4
Q ss_pred CCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEE
Q 020756 18 SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEF 97 (321)
Q Consensus 18 ~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l 97 (321)
.+.+.+.+-+.-.+..+.|.|..-.|++....| +...||.+..++. -.+.-..|..+|.++.|+++|..|
T Consensus 204 kk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD---------~~vklW~vy~~~~-~lrtf~gH~k~Vrd~~~s~~g~~f 273 (503)
T KOG0282|consen 204 KKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMD---------GLVKLWNVYDDRR-CLRTFKGHRKPVRDASFNNCGTSF 273 (503)
T ss_pred HhheeeccCCccccchhhhccceeeEEEecCCC---------ceEEEEEEecCcc-eehhhhcchhhhhhhhccccCCee
Confidence 345556666667778889999655565543322 3323444433333 233334689999999999999999
Q ss_pred EEEEccCCCeEEEEeCC-CceeEEeC-CcCeeeEEEcCCC-CeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeE
Q 020756 98 AVVYGFMPASATIFNKK-CRPILELG-SGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTS 172 (321)
Q Consensus 98 ~~~~g~~~~~i~i~d~~-~~~~~~~~-~~~~~~~~~sPdG-~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~ 172 (321)
..+ .-|+.+++||+. +..+..|+ .....++.|+||+ +.+++++ .++.|..||+++++.+..+.+| .+..+
T Consensus 274 LS~--sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~---sd~ki~~wDiRs~kvvqeYd~hLg~i~~i 348 (503)
T KOG0282|consen 274 LSA--SFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGG---SDKKIRQWDIRSGKVVQEYDRHLGAILDI 348 (503)
T ss_pred eee--ecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEec---CCCcEEEEeccchHHHHHHHhhhhheeee
Confidence 986 558999999995 55677785 4567899999999 5555566 7899999999999999888877 88999
Q ss_pred EEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE----eccCceEEEEEecCCCCCCCC
Q 020756 173 EWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK----KMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 173 ~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~----~~~~~~~~~~w~P~~~~~~~~ 229 (321)
.|=++|+++++++. |..++||+..-....+ ...-.+..+.-+|..+.+...
T Consensus 349 ~F~~~g~rFissSD------dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQ 403 (503)
T KOG0282|consen 349 TFVDEGRRFISSSD------DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQ 403 (503)
T ss_pred EEccCCceEeeecc------CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhh
Confidence 99999999999994 8999999986443322 222355667888888877764
No 100
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.49 E-value=3.5e-13 Score=121.25 Aligned_cols=140 Identities=18% Similarity=0.318 Sum_probs=107.5
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC-
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG- 158 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~- 158 (321)
.+.|+++.|+|.-..++.+ +.+|+.|.|||++. .+++.+ -...-|.|+|+|.+ +.++++ |.|.+++.||++..
T Consensus 187 ~Dti~svkfNpvETsILas-~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPea-fnF~~a--~ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 187 ADSISSVKFNPVETSILAS-CASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEA-FNFVAA--NEDHNLYTYDMRNLS 262 (433)
T ss_pred CCceeEEecCCCcchheee-eccCCceEEEecccCCccceeeeeccccceecCccc-cceeec--cccccceehhhhhhc
Confidence 4567788888866554444 45789999999964 455555 45667899999954 444444 38899999999876
Q ss_pred eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce---e-EEeccCceEEEEEecCCCCCCCCcc
Q 020756 159 KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL---F-FKKMFDKLFQAEWKPVSPDKFGDIS 231 (321)
Q Consensus 159 ~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~---l-~~~~~~~~~~~~w~P~~~~~~~~~~ 231 (321)
..+..+..| .+.+++|||.|+-|++|+ .|.+|+||.++... + +......|.++.|+-|..++++..+
T Consensus 263 ~p~~v~~dhvsAV~dVdfsptG~Efvsgs------yDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSd 335 (433)
T KOG0268|consen 263 RPLNVHKDHVSAVMDVDFSPTGQEFVSGS------YDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSD 335 (433)
T ss_pred ccchhhcccceeEEEeccCCCcchhcccc------ccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCC
Confidence 456666666 788999999999999999 79999999996432 2 4456678999999999999998753
No 101
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.48 E-value=2.8e-12 Score=118.20 Aligned_cols=184 Identities=14% Similarity=0.262 Sum_probs=130.1
Q ss_pred CCCceEEEEEcCCcCC-CCceeeeecc---cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCC-Cce-e
Q 020756 2 GSPASVQIYACGKDLQ-SQPLARRSFF---RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG-THE-G 75 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~-~~~i~~~~~f---~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g-~~~-~ 75 (321)
+..+.|++|++..... ...+..+..| ...+-++.|++....|+..+..| ..|.+++... ... .
T Consensus 197 ~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd-----------~~L~iwD~R~~~~~~~ 265 (422)
T KOG0264|consen 197 SDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDD-----------GKLMIWDTRSNTSKPS 265 (422)
T ss_pred cCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCC-----------CeEEEEEcCCCCCCCc
Confidence 4678999999998431 2234445554 34555889999999888765321 1245555442 212 2
Q ss_pred eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC--ceeEEe--CCcCeeeEEEcCCCCe-EEEEccCCCCCcE
Q 020756 76 LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPILEL--GSGPYNTVRWNPKGKF-LCLAGFGNLPGDM 150 (321)
Q Consensus 76 ~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~--~~~~~~--~~~~~~~~~~sPdG~~-l~~~g~~n~~g~i 150 (321)
.....|.++|++++|+|.+..++. .|..|+++.|||++. .+++++ |...|..+.|||+-.. |+++| .|+.+
T Consensus 266 ~~~~ah~~~vn~~~fnp~~~~ilA-T~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl 341 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFNEFILA-TGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRL 341 (422)
T ss_pred ccccccCCceeEEEeCCCCCceEE-eccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCcE
Confidence 223348999999999998764443 378899999999964 466777 7889999999998664 55566 88999
Q ss_pred EEEECCCC--------------eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce
Q 020756 151 AFWDYVDG--------------KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 205 (321)
Q Consensus 151 ~iwD~~~~--------------~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~ 205 (321)
.+||+..- +++-...+| .|..+.|+|+-.+++++.+ .||.++||.....+
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~Sva-----eDN~LqIW~~s~~i 407 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVA-----EDNILQIWQMAENI 407 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEec-----CCceEEEeeccccc
Confidence 99998742 123333445 7888999999888887776 59999999876433
No 102
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=1.4e-12 Score=124.30 Aligned_cols=198 Identities=10% Similarity=0.084 Sum_probs=149.5
Q ss_pred ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec-CCCC
Q 020756 5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEG 83 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l-~~~~ 83 (321)
|.|.||++.+ ...+.....-...+...+|=..-+.+++-+. . ....+|.. +.. ++...+ .|.+
T Consensus 35 G~V~IWnyet---qtmVksfeV~~~PvRa~kfiaRknWiv~GsD-------D---~~IrVfny--nt~-ekV~~FeAH~D 98 (794)
T KOG0276|consen 35 GDVQIWNYET---QTMVKSFEVSEVPVRAAKFIARKNWIVTGSD-------D---MQIRVFNY--NTG-EKVKTFEAHSD 98 (794)
T ss_pred CeeEEEeccc---ceeeeeeeecccchhhheeeeccceEEEecC-------C---ceEEEEec--ccc-eeeEEeecccc
Confidence 6788888887 5666555555555556666666666665321 1 22233433 333 333333 4899
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc----eeEEeCCcCeeeEEEcC-CCCeEEEEccCCCCCcEEEEECCCC
Q 020756 84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR----PILELGSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYVDG 158 (321)
Q Consensus 84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~----~~~~~~~~~~~~~~~sP-dG~~l~~~g~~n~~g~i~iwD~~~~ 158 (321)
.|.+++-+|.--++.+. ..|.+|++||-..+ +.++-|...|.+++|+| |-+.+++++ +|++|++|.+.+.
T Consensus 99 yIR~iavHPt~P~vLts--SDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~s---LDrTVKVWslgs~ 173 (794)
T KOG0276|consen 99 YIRSIAVHPTLPYVLTS--SDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASAS---LDRTVKVWSLGSP 173 (794)
T ss_pred ceeeeeecCCCCeEEec--CCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeee---ccccEEEEEcCCC
Confidence 99999999999998885 55669999987543 44444888999999999 567899998 9999999999888
Q ss_pred eEEEeeeCC--CeeeEEEccCC--CEEEEEEcCCceeecCcEEEEeecCcee---EEeccCceEEEEEecCCCCCCCC
Q 020756 159 KQLGTTRAE--CSVTSEWSPDG--RYFMTATTAPRLQIDNGIKIFHHNGSLF---FKKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 159 ~~i~~~~~~--~~~~~~wSpdG--~~l~t~~s~~rl~~d~~v~iw~~~g~~l---~~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
.+..++++| .+.++++-+-| -||++++. |..++|||++.+.+ ..+|...+..+.++|.-|.+++.
T Consensus 174 ~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD------D~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisg 245 (794)
T KOG0276|consen 174 HPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD------DLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISG 245 (794)
T ss_pred CCceeeeccccCcceEEeccCCCcceEEecCC------CceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEe
Confidence 888888888 78899997754 68999995 99999999977654 77899999999999999888865
No 103
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.48 E-value=1.2e-12 Score=119.54 Aligned_cols=199 Identities=12% Similarity=0.111 Sum_probs=144.6
Q ss_pred CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756 3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE 82 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~ 82 (321)
....++||++.+ .+...+.+.++...+.+.+......+ +..+ .|.+-| .+++... .+.-++--.
T Consensus 239 ~d~~~r~Wnvd~---~r~~~TLsGHtdkVt~ak~~~~~~~v-Vsgs--~DRtiK---------~WDl~k~-~C~kt~l~~ 302 (459)
T KOG0288|consen 239 NDKNLRLWNVDS---LRLRHTLSGHTDKVTAAKFKLSHSRV-VSGS--ADRTIK---------LWDLQKA-YCSKTVLPG 302 (459)
T ss_pred CCCceeeeeccc---hhhhhhhcccccceeeehhhccccce-eecc--ccchhh---------hhhhhhh-heecccccc
Confidence 456789999999 78889999888888888887766653 3221 222222 2222221 222222233
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ 160 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~ 160 (321)
..+.|+..+ ...+++|-+|.+|++||.+. ..+.+. ..+.+.++..+++|..|++++ .|.++.+.|+++.+.
T Consensus 303 S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsss---RDdtl~viDlRt~eI 375 (459)
T KOG0288|consen 303 SQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSS---RDDTLKVIDLRTKEI 375 (459)
T ss_pred ccccceEec----ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeec---CCCceeeeecccccE
Confidence 456666666 23455588899999999864 455555 456899999999999999998 888999999999888
Q ss_pred EEeeeCC------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee-EE--eccC--ceEEEEEecCCCCCCCC
Q 020756 161 LGTTRAE------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF-FK--KMFD--KLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 161 i~~~~~~------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l-~~--~~~~--~~~~~~w~P~~~~~~~~ 229 (321)
...+.+. +.+.+.|||||+|+++|++ |+.|+||++.+..+ .. .... .+..++|.|.+..+++.
T Consensus 376 ~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~------dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsa 449 (459)
T KOG0288|consen 376 RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSA------DGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSA 449 (459)
T ss_pred EEEeeccccccccccceeEECCCCceeeeccC------CCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcc
Confidence 8777654 5667999999999999995 99999999966544 32 2233 59999999999888876
Q ss_pred c
Q 020756 230 I 230 (321)
Q Consensus 230 ~ 230 (321)
.
T Consensus 450 d 450 (459)
T KOG0288|consen 450 D 450 (459)
T ss_pred c
Confidence 3
No 104
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.48 E-value=2.2e-12 Score=120.20 Aligned_cols=202 Identities=12% Similarity=0.159 Sum_probs=148.3
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK 81 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~ 81 (321)
|+-+.|.||++.. .-.+....-++..+.-+.+|-...||+... ..|+.-|+.+.. +.....+..+.
T Consensus 98 G~~~~Vkiwdl~~---kl~hr~lkdh~stvt~v~YN~~DeyiAsvs----------~gGdiiih~~~t-~~~tt~f~~~s 163 (673)
T KOG4378|consen 98 GQSGCVKIWDLRA---KLIHRFLKDHQSTVTYVDYNNTDEYIASVS----------DGGDIIIHGTKT-KQKTTTFTIDS 163 (673)
T ss_pred CcCceeeehhhHH---HHHhhhccCCcceeEEEEecCCcceeEEec----------cCCcEEEEeccc-CccccceecCC
Confidence 7888999999986 344455555666677788888889988752 114333333222 11122333334
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe---CCcCeeeEEEcCCCC-eEEEEccCCCCCcEEEEECC
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL---GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYV 156 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~---~~~~~~~~~~sPdG~-~l~~~g~~n~~g~i~iwD~~ 156 (321)
.+.|.-+.+||..+.+.++.++ +|.+++||+.+. +++.+ |..+...|+|+|... +|++.| +|..|++||..
T Consensus 164 gqsvRll~ys~skr~lL~~asd-~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG---~Dkki~~yD~~ 239 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRFLLSIASD-KGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVG---YDKKINIYDIR 239 (673)
T ss_pred CCeEEEeecccccceeeEeecc-CCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEec---ccceEEEeecc
Confidence 5567789999999988887554 789999999764 66665 889999999999765 556677 99999999998
Q ss_pred CCeEEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce--e--EEeccCceEEEEEecCCCCCCC
Q 020756 157 DGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL--F--FKKMFDKLFQAEWKPVSPDKFG 228 (321)
Q Consensus 157 ~~~~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~--l--~~~~~~~~~~~~w~P~~~~~~~ 228 (321)
..+....+.. +..+.++|+++|.+|+.+++ .+.+..||+.+.. + ...|...|..++|+|.+ .++.
T Consensus 240 s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s------~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~-tvlt 309 (673)
T KOG4378|consen 240 SQASTDRLTYSHPLSTVAFSECGTYLCAGNS------KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP-TVLT 309 (673)
T ss_pred cccccceeeecCCcceeeecCCceEEEeecC------CceEEEEecccCCCCceEeeecccceeEEEeeecc-eeee
Confidence 8776666655 47788999999999999996 8889999997642 2 55566679999999986 4443
No 105
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.47 E-value=3e-12 Score=109.53 Aligned_cols=184 Identities=13% Similarity=0.197 Sum_probs=137.8
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK 81 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~ 81 (321)
|..-.||||+.-. +..|.+-+-...++.++.-+.|...++.. .|...++++++..+...+--..|
T Consensus 36 GsdrtvrLWNp~r---g~liktYsghG~EVlD~~~s~Dnskf~s~------------GgDk~v~vwDV~TGkv~Rr~rgH 100 (307)
T KOG0316|consen 36 GSDRTVRLWNPLR---GALIKTYSGHGHEVLDAALSSDNSKFASC------------GGDKAVQVWDVNTGKVDRRFRGH 100 (307)
T ss_pred CCCceEEeecccc---cceeeeecCCCceeeeccccccccccccC------------CCCceEEEEEcccCeeeeecccc
Confidence 4445566666555 45555554444555555555555555443 24556888888776555555579
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC---ceeEEeC--CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---RPILELG--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 156 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~---~~~~~~~--~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~ 156 (321)
.+.|+.++|+.+...++. |.+|..+++||-+. ++++.+. ...+.++..+ +..|+.++ .||+++.||++
T Consensus 101 ~aqVNtV~fNeesSVv~S--gsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS---~DGtvRtydiR 173 (307)
T KOG0316|consen 101 LAQVNTVRFNEESSVVAS--GSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS---VDGTVRTYDIR 173 (307)
T ss_pred cceeeEEEecCcceEEEe--ccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec---cCCcEEEEEee
Confidence 999999999998876665 89999999999854 5777773 5667777776 66788887 99999999999
Q ss_pred CCeEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee--EEeccCc
Q 020756 157 DGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF--FKKMFDK 213 (321)
Q Consensus 157 ~~~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l--~~~~~~~ 213 (321)
.|......-++.+++++||+||+..+.++ .|..+++.|- +|+++ |++|...
T Consensus 174 ~G~l~sDy~g~pit~vs~s~d~nc~La~~------l~stlrLlDk~tGklL~sYkGhkn~ 227 (307)
T KOG0316|consen 174 KGTLSSDYFGHPITSVSFSKDGNCSLASS------LDSTLRLLDKETGKLLKSYKGHKNM 227 (307)
T ss_pred cceeehhhcCCcceeEEecCCCCEEEEee------ccceeeecccchhHHHHHhcccccc
Confidence 99999888889999999999999999988 5999999997 57776 6666653
No 106
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.47 E-value=2e-12 Score=121.21 Aligned_cols=129 Identities=17% Similarity=0.307 Sum_probs=100.0
Q ss_pred eeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeE----EeCCcCeeeEEEcCCCCe
Q 020756 62 SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL----ELGSGPYNTVRWNPKGKF 137 (321)
Q Consensus 62 ~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~----~~~~~~~~~~~~sPdG~~ 137 (321)
..||-|.-+...+..+.+.|.++|+++++||||.+||++ +..+++.+||+...... .||...+++++|||+..+
T Consensus 467 vhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~--Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~ 544 (603)
T KOG0318|consen 467 VHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAG--DASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKL 544 (603)
T ss_pred EEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEe--ccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceE
Confidence 345544433334555677899999999999999999995 66789999999655433 459999999999999999
Q ss_pred EEEEccCCCCCcEEEEECCCC-eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756 138 LCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 138 l~~~g~~n~~g~i~iwD~~~~-~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
+++++ +|..|.||+++.- +.+..-.+| .++.+.|--+.. +++++ .|..+++|++.
T Consensus 545 vATGS---lDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde~t-vvSsG------~Da~iK~W~v~ 602 (603)
T KOG0318|consen 545 VATGS---LDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDEST-VVSSG------QDANIKVWNVT 602 (603)
T ss_pred EEecc---ccceEEEEEccChhhheEeccccccCceeEEEecCce-EEecc------CcceeEEeccc
Confidence 99999 9999999999864 334333444 688999987755 55555 39999999874
No 107
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=4.8e-12 Score=117.01 Aligned_cols=203 Identities=11% Similarity=0.156 Sum_probs=147.7
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec--
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-- 79 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l-- 79 (321)
|..+.+|||.+.-.. +..+....|-+.......+.|+|.-.++.+ +..-| +|.++........+..
T Consensus 232 G~d~~lrifqvDGk~-N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s-------~rrky----~ysyDle~ak~~k~~~~~ 299 (514)
T KOG2055|consen 232 GLDGTLRIFQVDGKV-NPKLQSIHLEKFPIQKAEFAPNGHSVIFTS-------GRRKY----LYSYDLETAKVTKLKPPY 299 (514)
T ss_pred cCCCcEEEEEecCcc-ChhheeeeeccCccceeeecCCCceEEEec-------ccceE----EEEeeccccccccccCCC
Confidence 788999999998743 456777777778888899999999655543 22212 3555543332222211
Q ss_pred C-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756 80 R-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 156 (321)
Q Consensus 80 ~-~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~ 156 (321)
. .+..+..+..||++.+|++. ...+-|.|...++ +.+.++ -.+.+..+.|+-||+.|++++ .+|+|++||++
T Consensus 300 g~e~~~~e~FeVShd~~fia~~--G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~---~~GeV~v~nl~ 374 (514)
T KOG2055|consen 300 GVEEKSMERFEVSHDSNFIAIA--GNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASG---GTGEVYVWNLR 374 (514)
T ss_pred CcccchhheeEecCCCCeEEEc--ccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEc---CCceEEEEecC
Confidence 1 24567889999999988886 4467888887754 456666 478899999999999999998 88999999999
Q ss_pred CCeEEEeeeCC---CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee-------EE--eccCceEEEEEecCCC
Q 020756 157 DGKQLGTTRAE---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF-------FK--KMFDKLFQAEWKPVSP 224 (321)
Q Consensus 157 ~~~~i~~~~~~---~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l-------~~--~~~~~~~~~~w~P~~~ 224 (321)
...++..+... ..++++-|++|+|||+++. .+-|-|||.+.... .. .-...|.++.|+|+..
T Consensus 375 ~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~------~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q 448 (514)
T KOG2055|consen 375 QNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD------SGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ 448 (514)
T ss_pred CcceEEEEeecCccceeeeeecCCCceEEeccC------cceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence 99999888764 5567899999999999993 66789999743221 11 1123678899999875
Q ss_pred CCC
Q 020756 225 DKF 227 (321)
Q Consensus 225 ~~~ 227 (321)
.+.
T Consensus 449 iLA 451 (514)
T KOG2055|consen 449 ILA 451 (514)
T ss_pred hhh
Confidence 444
No 108
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.47 E-value=3e-12 Score=115.16 Aligned_cols=178 Identities=12% Similarity=0.140 Sum_probs=141.3
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK 81 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~ 81 (321)
+.+..++||++.+ ++...+.+-.......++.|+...|+.... . | +. +..+++....--+---.|
T Consensus 170 s~DrtikIwDlat---g~LkltltGhi~~vr~vavS~rHpYlFs~g-e--d-------k~--VKCwDLe~nkvIR~YhGH 234 (460)
T KOG0285|consen 170 SADRTIKIWDLAT---GQLKLTLTGHIETVRGVAVSKRHPYLFSAG-E--D-------KQ--VKCWDLEYNKVIRHYHGH 234 (460)
T ss_pred CCCceeEEEEccc---CeEEEeecchhheeeeeeecccCceEEEec-C--C-------Ce--eEEEechhhhhHHHhccc
Confidence 3578899999999 888888888888888999999999987652 1 1 12 333333322111112246
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 158 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~ 158 (321)
-..|++++..|.-+.|++ +..|..+++||++++ .++.+ |..+|..+.+.|..-.|++++ .|++|++||+..+
T Consensus 235 lS~V~~L~lhPTldvl~t--~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S---~D~tvrlWDl~ag 309 (460)
T KOG0285|consen 235 LSGVYCLDLHPTLDVLVT--GGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS---HDSTVRLWDLRAG 309 (460)
T ss_pred cceeEEEeccccceeEEe--cCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec---CCceEEEeeeccC
Confidence 788999999999998888 577999999999765 67777 889999999999999999999 9999999999999
Q ss_pred eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee
Q 020756 159 KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF 206 (321)
Q Consensus 159 ~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l 206 (321)
+.+.++.+| .+.+++.+|+-..||+++ .+.++-|++ .|..+
T Consensus 310 kt~~tlt~hkksvral~lhP~e~~fASas-------~dnik~w~~p~g~f~ 353 (460)
T KOG0285|consen 310 KTMITLTHHKKSVRALCLHPKENLFASAS-------PDNIKQWKLPEGEFL 353 (460)
T ss_pred ceeEeeecccceeeEEecCCchhhhhccC-------CccceeccCCccchh
Confidence 999888888 566789999999888888 678899998 45444
No 109
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.46 E-value=9.5e-13 Score=122.73 Aligned_cols=212 Identities=9% Similarity=0.147 Sum_probs=160.0
Q ss_pred CCCceEEEEEcCCcCCCCceeeeeccc--CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee-
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFR--CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP- 78 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~--~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~- 78 (321)
|--+.|+||+|..-....++++....+ .-....+-.|||+.|++- |. .. +|.+|++... ..++.
T Consensus 437 gGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivG--------Ge--as--tlsiWDLAap-Tprika 503 (705)
T KOG0639|consen 437 GGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVG--------GE--AS--TLSIWDLAAP-TPRIKA 503 (705)
T ss_pred cCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEec--------cc--cc--eeeeeeccCC-Ccchhh
Confidence 567899999999854466787776553 334577889999999884 11 12 2444444332 22222
Q ss_pred -cCC-CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEE
Q 020756 79 -LRK-EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW 153 (321)
Q Consensus 79 -l~~-~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw 153 (321)
+.. .-.++.++.|||.+..+.| +.|+.|.|||+..+ .+..| |...+.||..++||..|-++| +|.+|+-|
T Consensus 504 eltssapaCyALa~spDakvcFsc--csdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGG---lDntvRcW 578 (705)
T KOG0639|consen 504 ELTSSAPACYALAISPDAKVCFSC--CSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGG---LDNTVRCW 578 (705)
T ss_pred hcCCcchhhhhhhcCCccceeeee--ccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCC---Cccceeeh
Confidence 222 2357889999999866665 56889999999765 55667 788999999999999999999 99999999
Q ss_pred ECCCCeEEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE--eccCceEEEEEecCCCCCCCCc
Q 020756 154 DYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK--KMFDKLFQAEWKPVSPDKFGDI 230 (321)
Q Consensus 154 D~~~~~~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~--~~~~~~~~~~w~P~~~~~~~~~ 230 (321)
|++.+..+....- ..|.++-.+|+|.+++.+- ..+.+.|-+.++..-|. .|.+-|.++.|.+.+.+..+..
T Consensus 579 DlregrqlqqhdF~SQIfSLg~cP~~dWlavGM------ens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStG 652 (705)
T KOG0639|consen 579 DLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGM------ENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTG 652 (705)
T ss_pred hhhhhhhhhhhhhhhhheecccCCCccceeeec------ccCcEEEEecCCccceeecccccEEEEEEecccCceeeecC
Confidence 9999877665433 3788999999999999999 47889999998866544 4556788999999999988875
Q ss_pred -chhhhcc
Q 020756 231 -SELIKSV 237 (321)
Q Consensus 231 -~~~~~~~ 237 (321)
|++...|
T Consensus 653 kDnlLnaw 660 (705)
T KOG0639|consen 653 KDNLLNAW 660 (705)
T ss_pred chhhhhhc
Confidence 6666555
No 110
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.46 E-value=1.4e-11 Score=117.94 Aligned_cols=185 Identities=15% Similarity=0.210 Sum_probs=120.4
Q ss_pred ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756 5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP 84 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~ 84 (321)
..|.+|++.. ++. .....+......+.|+|||+.|++.... . +...||.++..+.....+. .+.+.
T Consensus 214 ~~i~v~d~~~---g~~-~~~~~~~~~~~~~~~spDg~~l~~~~~~----~-----~~~~i~~~d~~~~~~~~l~-~~~~~ 279 (417)
T TIGR02800 214 PEIYVQDLAT---GQR-EKVASFPGMNGAPAFSPDGSKLAVSLSK----D-----GNPDIYVMDLDGKQLTRLT-NGPGI 279 (417)
T ss_pred cEEEEEECCC---CCE-EEeecCCCCccceEECCCCCEEEEEECC----C-----CCccEEEEECCCCCEEECC-CCCCC
Confidence 4678888876 332 2333344455678999999999876321 1 3345888888766444443 23345
Q ss_pred eEEEEECcCCCEEEEEEccC-CCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEE
Q 020756 85 VHDVQWSYSGSEFAVVYGFM-PASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL 161 (321)
Q Consensus 85 v~~~~wsP~g~~l~~~~g~~-~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i 161 (321)
.....|+|||+.|+++.... ...|.++|+.+.....+ +......+.|+|+|++|+++........|++||+.++...
T Consensus 280 ~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~ 359 (417)
T TIGR02800 280 DTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGER 359 (417)
T ss_pred CCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeE
Confidence 56789999999998764321 22688888866554444 4455667899999999999873222348999999876443
Q ss_pred EeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee
Q 020756 162 GTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF 206 (321)
Q Consensus 162 ~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l 206 (321)
............|+|||++|++++... ....+.+.+.+|...
T Consensus 360 ~l~~~~~~~~p~~spdg~~l~~~~~~~---~~~~l~~~~~~g~~~ 401 (417)
T TIGR02800 360 VLTDTGLDESPSFAPNGRMILYATTRG---GRGVLGLVSTDGRFR 401 (417)
T ss_pred EccCCCCCCCceECCCCCEEEEEEeCC---CcEEEEEEECCCcee
Confidence 333222345578999999999988521 112456666666654
No 111
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.45 E-value=4.6e-12 Score=114.63 Aligned_cols=210 Identities=15% Similarity=0.255 Sum_probs=151.9
Q ss_pred CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCe--eEEEEEecccCCCceeecceeEEEEEcCCCceeeeec-
Q 020756 3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTG--LLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL- 79 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~--l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l- 79 (321)
.+|.+|||+..- +.+.+..-.......+.|--..+. +++.++. |. .-.||.++........+..
T Consensus 123 YDg~~riWd~~G----k~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~--Dq-------tl~Lw~~~~~~~~~~~~~~~ 189 (423)
T KOG0313|consen 123 YDGTSRIWDLKG----KSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASM--DQ-------TLRLWKWNVGENKVKALKVC 189 (423)
T ss_pred cCCeeEEEecCC----ceEEEEecCCcceeeeEEEecCCccceEEEecC--Cc-------eEEEEEecCchhhhhHHhHh
Confidence 357889998854 667777766666666777543332 3333321 11 1124444433322222222
Q ss_pred -CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC--------------------------CceeEEe--CCcCeeeEE
Q 020756 80 -RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--------------------------CRPILEL--GSGPYNTVR 130 (321)
Q Consensus 80 -~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~--------------------------~~~~~~~--~~~~~~~~~ 130 (321)
.|+.+|.++.-.++|..|+. |.-|..+.||+.. ..++.++ |..+|..+.
T Consensus 190 ~GHk~~V~sVsv~~sgtr~~S--gS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~ 267 (423)
T KOG0313|consen 190 RGHKRSVDSVSVDSSGTRFCS--GSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVV 267 (423)
T ss_pred cccccceeEEEecCCCCeEEe--ecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEE
Confidence 79999999999999999988 5778999999821 1134444 788999999
Q ss_pred EcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee---cCcee
Q 020756 131 WNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH---NGSLF 206 (321)
Q Consensus 131 ~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~---~g~~l 206 (321)
|++ ...+++++ .|.+|+.||+.++.++..+... ...+++.+|..++|+++++ |..+++||- +|..+
T Consensus 268 w~d-~~v~yS~S---wDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gss------dr~irl~DPR~~~gs~v 337 (423)
T KOG0313|consen 268 WSD-ATVIYSVS---WDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSS------DRHIRLWDPRTGDGSVV 337 (423)
T ss_pred EcC-CCceEeec---ccceEEEEEeecccceeeeecCcceeEeecccccceeeecCC------CCceeecCCCCCCCcee
Confidence 998 66777888 9999999999999888887776 7888999999999999997 999999998 34444
Q ss_pred ---EEeccCceEEEEEecCCCCCCCCc--chhhhcc
Q 020756 207 ---FKKMFDKLFQAEWKPVSPDKFGDI--SELIKSV 237 (321)
Q Consensus 207 ---~~~~~~~~~~~~w~P~~~~~~~~~--~~~~~~~ 237 (321)
+.+|...|..+.|+|...+.|... |+..+.|
T Consensus 338 ~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klW 373 (423)
T KOG0313|consen 338 SQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLW 373 (423)
T ss_pred EEeeecchhhhhheecCCCCceEEEEEecCCeEEEE
Confidence 667888999999999998888653 4444444
No 112
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.43 E-value=7.2e-12 Score=107.22 Aligned_cols=200 Identities=11% Similarity=0.147 Sum_probs=149.2
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec--
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-- 79 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l-- 79 (321)
|.+-.|.+|++.+ ++.++...-+-+.+..+.||-+..-++.. + .|. . +-.++........+++
T Consensus 78 GgDk~v~vwDV~T---Gkv~Rr~rgH~aqVNtV~fNeesSVv~Sg-s--fD~-------s--~r~wDCRS~s~ePiQild 142 (307)
T KOG0316|consen 78 GGDKAVQVWDVNT---GKVDRRFRGHLAQVNTVRFNEESSVVASG-S--FDS-------S--VRLWDCRSRSFEPIQILD 142 (307)
T ss_pred CCCceEEEEEccc---CeeeeecccccceeeEEEecCcceEEEec-c--ccc-------e--eEEEEcccCCCCccchhh
Confidence 6678899999999 88888888788888899999887655442 1 222 2 3344443332333332
Q ss_pred CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCcee-EEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756 80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 158 (321)
Q Consensus 80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~-~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~ 158 (321)
+..+.|.++..+ +.+|+. |..|++++.||++...+ ...-..+++++.||+||++++.+. ++++|++.|..+|
T Consensus 143 ea~D~V~Si~v~--~heIva--GS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~---l~stlrLlDk~tG 215 (307)
T KOG0316|consen 143 EAKDGVSSIDVA--EHEIVA--GSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASS---LDSTLRLLDKETG 215 (307)
T ss_pred hhcCceeEEEec--ccEEEe--eccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEee---ccceeeecccchh
Confidence 245678877776 344554 78899999999965444 344578999999999999999999 9999999999999
Q ss_pred eEEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEec-c--CceEEEEEecCCCCCCCC
Q 020756 159 KQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKM-F--DKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 159 ~~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~~-~--~~~~~~~w~P~~~~~~~~ 229 (321)
+++..+.+| .-..++++....++++++ .|+.+.+||+ ++.++.+.. . ..+.++.++|.-..++.+
T Consensus 216 klL~sYkGhkn~eykldc~l~qsdthV~sgS------EDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A 288 (307)
T KOG0316|consen 216 KLLKSYKGHKNMEYKLDCCLNQSDTHVFSGS------EDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITA 288 (307)
T ss_pred HHHHHhcccccceeeeeeeecccceeEEecc------CCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEe
Confidence 999998887 334588888889998888 6999999998 455553332 2 247899999988877765
No 113
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.43 E-value=5e-11 Score=110.85 Aligned_cols=207 Identities=9% Similarity=0.108 Sum_probs=129.6
Q ss_pred CCceEEEEEcCCcCCCC--ceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC
Q 020756 3 SPASVQIYACGKDLQSQ--PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR 80 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~--~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~ 80 (321)
..+.|++|++.+. +. .+.... .......+.++|+|++|++.... . +....|.++.++.....-...
T Consensus 10 ~~~~I~~~~~~~~--g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~----~-----~~i~~~~~~~~g~l~~~~~~~ 77 (330)
T PRK11028 10 ESQQIHVWNLNHE--GALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRP----E-----FRVLSYRIADDGALTFAAESP 77 (330)
T ss_pred CCCCEEEEEECCC--CceeeeeEEe-cCCCCccEEECCCCCEEEEEECC----C-----CcEEEEEECCCCceEEeeeec
Confidence 4678999999641 22 222222 12456678999999998775321 1 222234443223211111122
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-----eeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEE
Q 020756 81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-----PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD 154 (321)
Q Consensus 81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-----~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD 154 (321)
..+....+.++|+|+.|+++ ...++.+.+|++... .+..+ +......+.++|+|++|++++. .++.|.+||
T Consensus 78 ~~~~p~~i~~~~~g~~l~v~-~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~--~~~~v~v~d 154 (330)
T PRK11028 78 LPGSPTHISTDHQGRFLFSA-SYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL--KEDRIRLFT 154 (330)
T ss_pred CCCCceEEEECCCCCEEEEE-EcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC--CCCEEEEEE
Confidence 33456789999999988887 345789999998532 22233 3345667889999999988773 358999999
Q ss_pred CCCCeEEE--------eeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec---Cce--eEEec--cC------c
Q 020756 155 YVDGKQLG--------TTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN---GSL--FFKKM--FD------K 213 (321)
Q Consensus 155 ~~~~~~i~--------~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~---g~~--l~~~~--~~------~ 213 (321)
+++...+. ...+.....+.|+|||++++++.. .++.+.+|+++ |.+ +.... .. .
T Consensus 155 ~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~-----~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 229 (330)
T PRK11028 155 LSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE-----LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRW 229 (330)
T ss_pred ECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec-----CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcc
Confidence 97632221 112235567899999999988874 48999999995 332 11111 01 1
Q ss_pred eEEEEEecCCCCCCCC
Q 020756 214 LFQAEWKPVSPDKFGD 229 (321)
Q Consensus 214 ~~~~~w~P~~~~~~~~ 229 (321)
...+.++|+...+|..
T Consensus 230 ~~~i~~~pdg~~lyv~ 245 (330)
T PRK11028 230 AADIHITPDGRHLYAC 245 (330)
T ss_pred ceeEEECCCCCEEEEe
Confidence 2257788998888865
No 114
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.43 E-value=3.4e-12 Score=122.23 Aligned_cols=205 Identities=12% Similarity=0.196 Sum_probs=144.5
Q ss_pred CCCceEEEEEcCCcCC--CCc-eeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-eee-
Q 020756 2 GSPASVQIYACGKDLQ--SQP-LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGL- 76 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~--~~~-i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~~~- 76 (321)
|.+|.|++|+++.... .++ ++....+..-+.++.--.+|+.|+.+ +. .+.+.+|+..... -+.
T Consensus 44 GRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~-Ss-----------DtTVK~W~~~~~~~~c~s 111 (735)
T KOG0308|consen 44 GRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISA-SS-----------DTTVKVWNAHKDNTFCMS 111 (735)
T ss_pred CCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEe-cC-----------CceEEEeecccCcchhHh
Confidence 6789999999998541 122 34444444444445545566655443 22 1223344332221 222
Q ss_pred eecCCCCCeEEEEE-CcCCCEEEEEEccCCCeEEEEeCCCc---eeEE--------e---CCcCeeeEEEcCCCCeEEEE
Q 020756 77 VPLRKEGPVHDVQW-SYSGSEFAVVYGFMPASATIFNKKCR---PILE--------L---GSGPYNTVRWNPKGKFLCLA 141 (321)
Q Consensus 77 v~l~~~~~v~~~~w-sP~g~~l~~~~g~~~~~i~i~d~~~~---~~~~--------~---~~~~~~~~~~sPdG~~l~~~ 141 (321)
.-..|.+.|.+++. .++...+|. |..|+.|.|||+... .+.+ + +...+.+++-+|.|..|+.+
T Consensus 112 tir~H~DYVkcla~~ak~~~lvaS--gGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsG 189 (735)
T KOG0308|consen 112 TIRTHKDYVKCLAYIAKNNELVAS--GGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSG 189 (735)
T ss_pred hhhcccchheeeeecccCceeEEe--cCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEec
Confidence 22358999999999 666544444 788999999999632 2222 2 34568899999999888888
Q ss_pred ccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee---EEeccCceEE
Q 020756 142 GFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF---FKKMFDKLFQ 216 (321)
Q Consensus 142 g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l---~~~~~~~~~~ 216 (321)
| ..+.|+|||.++++.+-.+.+| ++-.+-.+.||+.++++++ |+.|++||+..+.+ +..|.+.+|.
T Consensus 190 g---tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS------DgtIrlWdLgqQrCl~T~~vH~e~VWa 260 (735)
T KOG0308|consen 190 G---TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS------DGTIRLWDLGQQRCLATYIVHKEGVWA 260 (735)
T ss_pred C---cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC------CceEEeeeccccceeeeEEeccCceEE
Confidence 8 8899999999999988888888 7888999999999999997 99999999965544 5567778888
Q ss_pred EEEecCCCCCCCC
Q 020756 217 AEWKPVSPDKFGD 229 (321)
Q Consensus 217 ~~w~P~~~~~~~~ 229 (321)
+.-+|.-..+|+.
T Consensus 261 L~~~~sf~~vYsG 273 (735)
T KOG0308|consen 261 LQSSPSFTHVYSG 273 (735)
T ss_pred EeeCCCcceEEec
Confidence 8888776767665
No 115
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.42 E-value=4e-11 Score=108.35 Aligned_cols=176 Identities=14% Similarity=0.272 Sum_probs=129.4
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc--eeeeec
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--EGLVPL 79 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~--~~~v~l 79 (321)
++|-.++|+.+.. +..|+... |......+..|.+ +|+++.. . .+|..++.... ...-..
T Consensus 65 ~qpr~Lkv~~~Kk---~~~ICe~~-fpt~IL~VrmNr~--RLvV~Le-----------e--~IyIydI~~MklLhTI~t~ 125 (391)
T KOG2110|consen 65 KQPRKLKVVHFKK---KTTICEIF-FPTSILAVRMNRK--RLVVCLE-----------E--SIYIYDIKDMKLLHTIETT 125 (391)
T ss_pred CCCceEEEEEccc---CceEEEEe-cCCceEEEEEccc--eEEEEEc-----------c--cEEEEecccceeehhhhcc
Confidence 4666788888877 67777776 4567888888874 5555532 1 14444444331 111111
Q ss_pred -CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeC-CCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCc-EEEEE
Q 020756 80 -RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGD-MAFWD 154 (321)
Q Consensus 80 -~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~-i~iwD 154 (321)
.+...+.++..++.+.++++-.....|.|.|||+ ...++..+ |.+.+-+++|||+|.+||+++ ..|+ |+|+.
T Consensus 126 ~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATAS---eKGTVIRVf~ 202 (391)
T KOG2110|consen 126 PPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATAS---EKGTVIRVFS 202 (391)
T ss_pred CCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEec---cCceEEEEEE
Confidence 2445577777777888999865556789999998 44556555 899999999999999999998 6664 67999
Q ss_pred CCCCeEEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce
Q 020756 155 YVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 205 (321)
Q Consensus 155 ~~~~~~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~ 205 (321)
+.+|+++..|... .+.+++||||+.+|.++++ ..+|+||.+....
T Consensus 203 v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~------TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 203 VPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSN------TETVHIFKLEKVS 251 (391)
T ss_pred cCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecC------CCeEEEEEecccc
Confidence 9999999999875 6778999999999888885 7899999985443
No 116
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.42 E-value=8.9e-13 Score=122.92 Aligned_cols=170 Identities=16% Similarity=0.246 Sum_probs=126.3
Q ss_pred ecccCCCceeecc-eeEEEEEcCC--CceeeeecC---CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc--ee-E
Q 020756 49 SDVDKTNQSYYGE-SKLNYLTTDG--THEGLVPLR---KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PI-L 119 (321)
Q Consensus 49 ~d~d~t~~s~~g~-~~l~~l~~~g--~~~~~v~l~---~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~--~~-~ 119 (321)
+....+...|.|. ..+..|++.+ .....-.|+ .+..|.++...|||+.|++ |..-.++.|||+... .+ .
T Consensus 426 tIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLiv--GGeastlsiWDLAapTprika 503 (705)
T KOG0639|consen 426 TISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIV--GGEASTLSIWDLAAPTPRIKA 503 (705)
T ss_pred EecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEe--ccccceeeeeeccCCCcchhh
Confidence 4444455555433 3344444433 222222222 4678999999999999998 566779999999543 11 2
Q ss_pred EeCC--cCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCc
Q 020756 120 ELGS--GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNG 195 (321)
Q Consensus 120 ~~~~--~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~ 195 (321)
.+.. -.+..++.|||.+.++.+. .||+|.|||+.+...+..|.+| .+.+|..|+||..|.|++ .||+
T Consensus 504 eltssapaCyALa~spDakvcFscc---sdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGG------lDnt 574 (705)
T KOG0639|consen 504 ELTSSAPACYALAISPDAKVCFSCC---SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGG------LDNT 574 (705)
T ss_pred hcCCcchhhhhhhcCCccceeeeec---cCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCC------Cccc
Confidence 2322 3467799999999988887 8999999999999999999998 788999999999999999 5999
Q ss_pred EEEEee-cCceeEEecc-CceEEEEEecCCCCCCCC
Q 020756 196 IKIFHH-NGSLFFKKMF-DKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 196 v~iw~~-~g~~l~~~~~-~~~~~~~w~P~~~~~~~~ 229 (321)
|+.||+ .|+.+.+..+ +.|.++.+.|...++.-.
T Consensus 575 vRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavG 610 (705)
T KOG0639|consen 575 VRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVG 610 (705)
T ss_pred eeehhhhhhhhhhhhhhhhhheecccCCCccceeee
Confidence 999999 4666655544 588999999998887743
No 117
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.41 E-value=1.6e-11 Score=121.51 Aligned_cols=138 Identities=24% Similarity=0.409 Sum_probs=110.0
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756 81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 157 (321)
Q Consensus 81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~ 157 (321)
..-++.+++++-+|+.+|. |..|-.|++-++. ....+.+ |.+++.++.|+|.|.+||++. .+|.|+|||+++
T Consensus 95 ftlp~r~~~v~g~g~~iaa--gsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss---~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 95 FTLPIRDLAVSGSGKMIAA--GSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSS---CDGKVQIWDLQD 169 (933)
T ss_pred eeccceEEEEecCCcEEEe--ecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEe---cCceEEEEEccc
Confidence 3568999999999999988 5778888888874 3344444 899999999999999999999 999999999999
Q ss_pred CeEEEeeeCC----------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee-EE----eccCceEEEEEecC
Q 020756 158 GKQLGTTRAE----------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF-FK----KMFDKLFQAEWKPV 222 (321)
Q Consensus 158 ~~~i~~~~~~----------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l-~~----~~~~~~~~~~w~P~ 222 (321)
+.+..++..- .+..++|+|+|..|+... +|+.|++|+..|..+ +. .+...+..++|+|.
T Consensus 170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~------~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn 243 (933)
T KOG1274|consen 170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP------VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN 243 (933)
T ss_pred chhhhhcccCCccccccccceeeeeeecCCCCeEEeec------cCCeEEEEccCCceeheeecccccccceEEEEEcCC
Confidence 8766554431 345589999977777777 499999999876544 22 23345899999999
Q ss_pred CCCCCCC
Q 020756 223 SPDKFGD 229 (321)
Q Consensus 223 ~~~~~~~ 229 (321)
+.+|...
T Consensus 244 G~YiAAs 250 (933)
T KOG1274|consen 244 GKYIAAS 250 (933)
T ss_pred CcEEeee
Confidence 9998876
No 118
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.40 E-value=2.1e-13 Score=121.17 Aligned_cols=143 Identities=13% Similarity=0.218 Sum_probs=122.0
Q ss_pred eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeE--------E--eCCcCeeeEEEcCCCCeEEEEccCC
Q 020756 77 VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPIL--------E--LGSGPYNTVRWNPKGKFLCLAGFGN 145 (321)
Q Consensus 77 v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~--------~--~~~~~~~~~~~sPdG~~l~~~g~~n 145 (321)
+.+..+..+.+..|||||++|+. |..|+-|.+||... +... . ..+..+-|+.||-|...|++++
T Consensus 208 IKFg~KSh~EcA~FSPDgqyLvs--gSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs--- 282 (508)
T KOG0275|consen 208 IKFGQKSHVECARFSPDGQYLVS--GSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS--- 282 (508)
T ss_pred eecccccchhheeeCCCCceEee--ccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC---
Confidence 33455677889999999999988 78899999998732 2222 1 2678899999999999999998
Q ss_pred CCCcEEEEECCCCeEEEeee-CC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee--EEeccCceEEEEE
Q 020756 146 LPGDMAFWDYVDGKQLGTTR-AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF--FKKMFDKLFQAEW 219 (321)
Q Consensus 146 ~~g~i~iwD~~~~~~i~~~~-~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l--~~~~~~~~~~~~w 219 (321)
.||.|++|.+.+|.|+..|+ +| .++++.||.|+..|++++ .|..++|--+ +|+++ +++|.+-+..+.|
T Consensus 283 qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~s------fD~tvRiHGlKSGK~LKEfrGHsSyvn~a~f 356 (508)
T KOG0275|consen 283 QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSAS------FDQTVRIHGLKSGKCLKEFRGHSSYVNEATF 356 (508)
T ss_pred cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccc------ccceEEEeccccchhHHHhcCccccccceEE
Confidence 99999999999999999987 45 899999999999999999 4999999887 67777 7788899999999
Q ss_pred ecCCCCCCCCc
Q 020756 220 KPVSPDKFGDI 230 (321)
Q Consensus 220 ~P~~~~~~~~~ 230 (321)
.+++..+++..
T Consensus 357 t~dG~~iisaS 367 (508)
T KOG0275|consen 357 TDDGHHIISAS 367 (508)
T ss_pred cCCCCeEEEec
Confidence 99999998763
No 119
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.39 E-value=2.4e-11 Score=107.28 Aligned_cols=153 Identities=20% Similarity=0.314 Sum_probs=118.0
Q ss_pred CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 020756 29 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA 108 (321)
Q Consensus 29 ~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i 108 (321)
..+..+.|||.-..+++.. ++.|...+|-++..|.........+.+||.+++|+-||..+++ |.-|+.+
T Consensus 28 DsIS~l~FSP~~~~~~~A~---------SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~--g~~Dk~~ 96 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAG---------SWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFS--GGCDKQA 96 (347)
T ss_pred cchheeEeccccCceEEec---------ccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEe--eccCCce
Confidence 3456889999777776653 4557888898888776666666679999999999999988777 5778999
Q ss_pred EEEeCCCceeEEe--CCcCeeeEEEcCCCC--eEEEEccCCCCCcEEEEECCCCeEEEeeeCC-CeeeEEEccCCCEEEE
Q 020756 109 TIFNKKCRPILEL--GSGPYNTVRWNPKGK--FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMT 183 (321)
Q Consensus 109 ~i~d~~~~~~~~~--~~~~~~~~~~sPdG~--~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t 183 (321)
++||+..+++..+ |.+++.++.|-+... +|++++ .|.+|++||+++...+.++.-+ .+..+. ---..++.
T Consensus 97 k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGS---WDKTlKfWD~R~~~pv~t~~LPeRvYa~D--v~~pm~vV 171 (347)
T KOG0647|consen 97 KLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGS---WDKTLKFWDTRSSNPVATLQLPERVYAAD--VLYPMAVV 171 (347)
T ss_pred EEEEccCCCeeeeeecccceeEEEEecCCCcceeEecc---cccceeecccCCCCeeeeeeccceeeehh--ccCceeEE
Confidence 9999988777776 899999999998777 777777 9999999999988888887765 333221 12234555
Q ss_pred EEcCCceeecCcEEEEeecC
Q 020756 184 ATTAPRLQIDNGIKIFHHNG 203 (321)
Q Consensus 184 ~~s~~rl~~d~~v~iw~~~g 203 (321)
++ .++.|.+|++.+
T Consensus 172 at------a~r~i~vynL~n 185 (347)
T KOG0647|consen 172 AT------AERHIAVYNLEN 185 (347)
T ss_pred Ee------cCCcEEEEEcCC
Confidence 55 378888888743
No 120
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.39 E-value=3.7e-11 Score=108.85 Aligned_cols=213 Identities=16% Similarity=0.250 Sum_probs=141.8
Q ss_pred CCCceEEEEEcCCcCC-CCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceee----cceeEEEE---------
Q 020756 2 GSPASVQIYACGKDLQ-SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYY----GESKLNYL--------- 67 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~-~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~----g~~~l~~l--------- 67 (321)
|++..+++|.+..... -+.+....-+++.+-.+.=+++|+.++... .|.+-+.+. -++.+--.
T Consensus 166 s~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS---~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~ 242 (423)
T KOG0313|consen 166 SMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS---WDTMLKIWSVETDEEDELESSSNRRRKKQK 242 (423)
T ss_pred cCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec---ccceeeecccCCCccccccccchhhhhhhh
Confidence 5677889999887320 112233336777777888889998876631 222111110 00000000
Q ss_pred --EcCCCceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe-CCcCeeeEEEcCCCCeEEEEc
Q 020756 68 --TTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-GSGPYNTVRWNPKGKFLCLAG 142 (321)
Q Consensus 68 --~~~g~~~~~v~l-~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~-~~~~~~~~~~sPdG~~l~~~g 142 (321)
...+.....+.+ .|.++|.++.|++ ...++.+ .-|.+|+.||+... .+.++ .....+++.++|..++|++++
T Consensus 243 ~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~--SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gs 319 (423)
T KOG0313|consen 243 REKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSV--SWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGS 319 (423)
T ss_pred hhhcccccCceEEecccccceeeEEEcC-CCceEee--cccceEEEEEeecccceeeeecCcceeEeecccccceeeecC
Confidence 001112223333 4899999999999 4445553 67899999999543 44444 788999999999999999998
Q ss_pred cCCCCCcEEEEECCCC--e-EEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC--cee--EEeccCc
Q 020756 143 FGNLPGDMAFWDYVDG--K-QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG--SLF--FKKMFDK 213 (321)
Q Consensus 143 ~~n~~g~i~iwD~~~~--~-~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g--~~l--~~~~~~~ 213 (321)
.|..|.+||.+++ + ...++.+| .+..+.|||...|++...+ .||.+++||+.. ..+ ...|.+.
T Consensus 320 ---sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S-----~D~t~klWDvRS~k~plydI~~h~DK 391 (423)
T KOG0313|consen 320 ---SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGS-----YDNTVKLWDVRSTKAPLYDIAGHNDK 391 (423)
T ss_pred ---CCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEe-----cCCeEEEEEeccCCCcceeeccCCce
Confidence 8999999998876 2 23445555 6888999999888887776 699999999943 244 4457789
Q ss_pred eEEEEEecCCCCCCCC
Q 020756 214 LFQAEWKPVSPDKFGD 229 (321)
Q Consensus 214 ~~~~~w~P~~~~~~~~ 229 (321)
|.++.|.-. ..|++.
T Consensus 392 vl~vdW~~~-~~IvSG 406 (423)
T KOG0313|consen 392 VLSVDWNEG-GLIVSG 406 (423)
T ss_pred EEEEeccCC-ceEEec
Confidence 999999643 344444
No 121
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.38 E-value=3.6e-12 Score=119.78 Aligned_cols=97 Identities=22% Similarity=0.454 Sum_probs=82.7
Q ss_pred ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCcee
Q 020756 116 RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQ 191 (321)
Q Consensus 116 ~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~ 191 (321)
+++..+ ..+.++.++|||||++|++.+ .||.++|+|..+.+++..++.. ...+++|||||+||++++
T Consensus 281 NPv~~w~~~~g~in~f~FS~DG~~LA~VS---qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGG------ 351 (636)
T KOG2394|consen 281 NPVARWHIGEGSINEFAFSPDGKYLATVS---QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGG------ 351 (636)
T ss_pred CccceeEeccccccceeEcCCCceEEEEe---cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecC------
Confidence 455544 677899999999999999999 9999999999998887776653 788999999999999999
Q ss_pred ecCcEEEEeecCc-ee--EEeccCceEEEEEec
Q 020756 192 IDNGIKIFHHNGS-LF--FKKMFDKLFQAEWKP 221 (321)
Q Consensus 192 ~d~~v~iw~~~g~-~l--~~~~~~~~~~~~w~P 221 (321)
.|.-|.||.+..+ .+ -++|.+.|..|+|.|
T Consensus 352 EDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 352 EDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred CcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 5999999999654 44 446888999999986
No 122
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.38 E-value=3.1e-12 Score=115.24 Aligned_cols=171 Identities=16% Similarity=0.251 Sum_probs=125.3
Q ss_pred eEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCe
Q 020756 6 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV 85 (321)
Q Consensus 6 ~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v 85 (321)
.|.||+..- ..|+.+.+..-.....+.+||--+.||..+..| +..-||.+..... ...+.+ .-.-
T Consensus 168 ~i~IWD~~R---~~Pv~smswG~Dti~svkfNpvETsILas~~sD---------rsIvLyD~R~~~P-l~KVi~--~mRT 232 (433)
T KOG0268|consen 168 QIDIWDEQR---DNPVSSMSWGADSISSVKFNPVETSILASCASD---------RSIVLYDLRQASP-LKKVIL--TMRT 232 (433)
T ss_pred eeeeccccc---CCccceeecCCCceeEEecCCCcchheeeeccC---------CceEEEecccCCc-cceeee--eccc
Confidence 578898887 678888888777778999999999998876433 2222444433332 222222 2345
Q ss_pred EEEEECcCCCEEEEEEccCCCeEEEEeCCCc--eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE-
Q 020756 86 HDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ- 160 (321)
Q Consensus 86 ~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~--~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~- 160 (321)
+.++|+|.+-.| +.+++|..++.||++.- ++..+ |-..+.++.|||.|+-+++++ .|.+|.||.++.+..
T Consensus 233 N~IswnPeafnF--~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~Efvsgs---yDksIRIf~~~~~~SR 307 (433)
T KOG0268|consen 233 NTICWNPEAFNF--VAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGS---YDKSIRIFPVNHGHSR 307 (433)
T ss_pred cceecCccccce--eeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccc---ccceEEEeecCCCcch
Confidence 689999955444 44799999999999642 33333 667788999999999999999 899999999987643
Q ss_pred -EEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756 161 -LGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 161 -i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
+..... ..+.++.||.|.+||++|+. |..|++|.-.
T Consensus 308 diYhtkRMq~V~~Vk~S~Dskyi~SGSd------d~nvRlWka~ 345 (433)
T KOG0268|consen 308 DIYHTKRMQHVFCVKYSMDSKYIISGSD------DGNVRLWKAK 345 (433)
T ss_pred hhhhHhhhheeeEEEEeccccEEEecCC------Ccceeeeecc
Confidence 222222 27889999999999999995 9999999853
No 123
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.37 E-value=3.1e-11 Score=107.27 Aligned_cols=179 Identities=10% Similarity=0.253 Sum_probs=119.9
Q ss_pred CCceEEEEEcCCcCC--CCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEc--CCCce-ee-
Q 020756 3 SPASVQIYACGKDLQ--SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT--DGTHE-GL- 76 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~--~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~--~g~~~-~~- 76 (321)
.++.||||++..|.. ...+++---.. -...+.|+||-+.+++.+.. |.+.+ +|-+.- +|... ..
T Consensus 106 ~Dr~Ir~w~~~DF~~~eHr~~R~nve~d-hpT~V~FapDc~s~vv~~~~-----g~~l~----vyk~~K~~dG~~~~~~v 175 (420)
T KOG2096|consen 106 GDRSIRLWDVRDFENKEHRCIRQNVEYD-HPTRVVFAPDCKSVVVSVKR-----GNKLC----VYKLVKKTDGSGSHHFV 175 (420)
T ss_pred CCceEEEEecchhhhhhhhHhhccccCC-CceEEEECCCcceEEEEEcc-----CCEEE----EEEeeecccCCCCcccc
Confidence 468999999998652 12232221122 34456777777777665431 11111 222211 12110 01
Q ss_pred ------eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEeCCc--CeeeEEEcCCCCeEEEEccCCCCC
Q 020756 77 ------VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSG--PYNTVRWNPKGKFLCLAGFGNLPG 148 (321)
Q Consensus 77 ------v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~~~--~~~~~~~sPdG~~l~~~g~~n~~g 148 (321)
+.-.|.-+|.++-...++.+|+.+ ..+.+|.|||+++..+..+... .-...+.||+|+||+++| ...
T Consensus 176 ~~D~~~f~~kh~v~~i~iGiA~~~k~imsa--s~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GRFia~~g---FTp 250 (420)
T KOG2096|consen 176 HIDNLEFERKHQVDIINIGIAGNAKYIMSA--SLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGRFIAVSG---FTP 250 (420)
T ss_pred cccccccchhcccceEEEeecCCceEEEEe--cCCCcEEEEecCCceeeeeccccccccceeeCCCCcEEEEec---CCC
Confidence 112256678888888889888887 5678999999999888888433 334578999999999999 556
Q ss_pred cEEEEECC---CC-----eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756 149 DMAFWDYV---DG-----KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 149 ~i~iwD~~---~~-----~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
+|.+|..- .| +.+-.+.+| .++.++||++.+.+++++ .|+.++|||.+
T Consensus 251 DVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvS------kDG~wriwdtd 308 (420)
T KOG2096|consen 251 DVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVS------KDGKWRIWDTD 308 (420)
T ss_pred CceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEe------cCCcEEEeecc
Confidence 89999753 22 234455666 688899999999999999 59999999984
No 124
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=2.9e-12 Score=129.37 Aligned_cols=209 Identities=18% Similarity=0.306 Sum_probs=151.2
Q ss_pred CCCceEEEEEcCCcC---CCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee
Q 020756 2 GSPASVQIYACGKDL---QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP 78 (321)
Q Consensus 2 g~p~~v~v~~~~~~~---~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~ 78 (321)
+..|.|.+|+..... ....+++++-+++.+..+.||+.+..++.... ++..|++|+++.. +....
T Consensus 87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa-----------~~geI~iWDlnn~-~tP~~ 154 (1049)
T KOG0307|consen 87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGA-----------DDGEILIWDLNKP-ETPFT 154 (1049)
T ss_pred ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccC-----------CCCcEEEeccCCc-CCCCC
Confidence 357889999987731 23357888888999999999999997776421 2223666666553 33332
Q ss_pred c---CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe----CCcCeeeEEEcCCCC-eEEEEccCCCCCc
Q 020756 79 L---RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL----GSGPYNTVRWNPKGK-FLCLAGFGNLPGD 149 (321)
Q Consensus 79 l---~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~----~~~~~~~~~~sPdG~-~l~~~g~~n~~g~ 149 (321)
. ...+.|++++|+-.-.+++.. +...+++.|||++.+ ++..+ +...++.+.|+|++. .|++++-.+....
T Consensus 155 ~~~~~~~~eI~~lsWNrkvqhILAS-~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~Pv 233 (1049)
T KOG0307|consen 155 PGSQAPPSEIKCLSWNRKVSHILAS-GSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPV 233 (1049)
T ss_pred CCCCCCcccceEeccchhhhHHhhc-cCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCce
Confidence 2 135679999999866555443 455679999999654 66666 234578999999875 5555653344578
Q ss_pred EEEEECCCC-eEEEeeeCC--CeeeEEEccCC-CEEEEEEcCCceeecCcEEEEee-cCceeEEecc--CceEEEEEecC
Q 020756 150 MAFWDYVDG-KQLGTTRAE--CSVTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF--DKLFQAEWKPV 222 (321)
Q Consensus 150 i~iwD~~~~-~~i~~~~~~--~~~~~~wSpdG-~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~~~--~~~~~~~w~P~ 222 (321)
|.+||++.- ..+..+++| .+..++|++.+ ++|++++ .|+.+.+|+. +|+.+..... +.+.++.|.|.
T Consensus 234 iqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg------kD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr 307 (1049)
T KOG0307|consen 234 IQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG------KDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPR 307 (1049)
T ss_pred eEeecccccCCchhhhcccccceeeeccCCCCchhhhccc------CCCCeeEecCCCceEeeecCCCCcceeeeeecCC
Confidence 999998754 455666666 89999999976 7777777 4999999998 5777766554 68999999999
Q ss_pred CCCCCCC
Q 020756 223 SPDKFGD 229 (321)
Q Consensus 223 ~~~~~~~ 229 (321)
.+.++..
T Consensus 308 ~P~~~A~ 314 (1049)
T KOG0307|consen 308 NPSVMAA 314 (1049)
T ss_pred Ccchhhh
Confidence 9988865
No 125
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.36 E-value=4.2e-11 Score=107.86 Aligned_cols=164 Identities=10% Similarity=0.059 Sum_probs=128.8
Q ss_pred eEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEE
Q 020756 63 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLC 139 (321)
Q Consensus 63 ~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~ 139 (321)
.+-++++..+......-.|...|..+++|+.--+++.+ ..|+.++.||+..+ .|... |-..|.++..+|.-..|+
T Consensus 174 tikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~--gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~ 251 (460)
T KOG0285|consen 174 TIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSA--GEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLV 251 (460)
T ss_pred eeEEEEcccCeEEEeecchhheeeeeeecccCceEEEe--cCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEE
Confidence 34555655543332222488899999999999888886 66899999999665 44444 678899999999999999
Q ss_pred EEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee--EEeccCce
Q 020756 140 LAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF--FKKMFDKL 214 (321)
Q Consensus 140 ~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l--~~~~~~~~ 214 (321)
++| .|..++|||+++...+..+.+| .+.++.+.|..--+++++ .|.+|++||+ .|+-+ ...|...+
T Consensus 252 t~g---rDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S------~D~tvrlWDl~agkt~~tlt~hkksv 322 (460)
T KOG0285|consen 252 TGG---RDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGS------HDSTVRLWDLRAGKTMITLTHHKKSV 322 (460)
T ss_pred ecC---CcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEec------CCceEEEeeeccCceeEeeeccccee
Confidence 999 9999999999999999999987 677888888666688888 4999999998 56655 45577789
Q ss_pred EEEEEecCCCCCCCCcchhhhcc
Q 020756 215 FQAEWKPVSPDKFGDISELIKSV 237 (321)
Q Consensus 215 ~~~~w~P~~~~~~~~~~~~~~~~ 237 (321)
..++-+|....+.+...+.+++|
T Consensus 323 ral~lhP~e~~fASas~dnik~w 345 (460)
T KOG0285|consen 323 RALCLHPKENLFASASPDNIKQW 345 (460)
T ss_pred eEEecCCchhhhhccCCccceec
Confidence 99999998877777655444444
No 126
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.36 E-value=2.1e-10 Score=97.73 Aligned_cols=120 Identities=19% Similarity=0.311 Sum_probs=99.3
Q ss_pred EccCCCeEEEEeCCCc-eeEEe----C-----CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--C
Q 020756 101 YGFMPASATIFNKKCR-PILEL----G-----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--C 168 (321)
Q Consensus 101 ~g~~~~~i~i~d~~~~-~~~~~----~-----~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~ 168 (321)
+|..|.+|++||++-+ .+.++ + ...+..++..|.|++|+++- .|....+||++.++.++.+..| .
T Consensus 199 sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~---~dssc~lydirg~r~iq~f~phsad 275 (350)
T KOG0641|consen 199 SGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH---ADSSCMLYDIRGGRMIQRFHPHSAD 275 (350)
T ss_pred ccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc---CCCceEEEEeeCCceeeeeCCCccc
Confidence 3788899999999644 33332 2 34578899999999999987 8889999999999999998776 7
Q ss_pred eeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee-------EEeccCceEEEEEecCCCCCCCC
Q 020756 169 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF-------FKKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 169 ~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l-------~~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
+.++.|||.-.|+++++ +|+.|++-|++|.+- ..+|.+.+.+..|+|+.-.+++.
T Consensus 276 ir~vrfsp~a~yllt~s------yd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfiss 337 (350)
T KOG0641|consen 276 IRCVRFSPGAHYLLTCS------YDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISS 337 (350)
T ss_pred eeEEEeCCCceEEEEec------ccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeec
Confidence 88999999999999999 799999999988642 45678889999999987655543
No 127
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.35 E-value=2.3e-11 Score=104.97 Aligned_cols=173 Identities=16% Similarity=0.288 Sum_probs=129.2
Q ss_pred CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756 3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE 82 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~ 82 (321)
+.--+|||++... ..+.....-....+..+.|-...+.||..+ +.+. +-+++...+ .....|...
T Consensus 120 ~ekllrvfdln~p--~App~E~~ghtg~Ir~v~wc~eD~~iLSSa----------dd~t--VRLWD~rTg-t~v~sL~~~ 184 (334)
T KOG0278|consen 120 QEKLLRVFDLNRP--KAPPKEISGHTGGIRTVLWCHEDKCILSSA----------DDKT--VRLWDHRTG-TEVQSLEFN 184 (334)
T ss_pred hHHHhhhhhccCC--CCCchhhcCCCCcceeEEEeccCceEEeec----------cCCc--eEEEEeccC-cEEEEEecC
Confidence 3345788888763 344444445567788889988777766542 1133 334444333 233445567
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ 160 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~ 160 (321)
.+|.++..+++|+++.+++|. .|.+||.+. +.+..+ -...|.+...+|+-.+++.+| .|+.++.||..+++.
T Consensus 185 s~VtSlEvs~dG~ilTia~gs---sV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGg---ed~~~~kfDy~TgeE 258 (334)
T KOG0278|consen 185 SPVTSLEVSQDGRILTIAYGS---SVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGG---EDFKVYKFDYNTGEE 258 (334)
T ss_pred CCCcceeeccCCCEEEEecCc---eeEEeccccccceeeccCccccccccccCCCceEEecC---cceEEEEEeccCCce
Confidence 899999999999999998764 799999854 455555 356788899999998888888 899999999999988
Q ss_pred EEee-eCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756 161 LGTT-RAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 161 i~~~-~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
+..+ ++| .+.++.|||||+..++++ .|++|+||..+
T Consensus 259 i~~~nkgh~gpVhcVrFSPdGE~yAsGS------EDGTirlWQt~ 297 (334)
T KOG0278|consen 259 IGSYNKGHFGPVHCVRFSPDGELYASGS------EDGTIRLWQTT 297 (334)
T ss_pred eeecccCCCCceEEEEECCCCceeeccC------CCceEEEEEec
Confidence 8775 554 789999999999999998 59999999864
No 128
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.33 E-value=1.7e-11 Score=115.27 Aligned_cols=164 Identities=13% Similarity=0.305 Sum_probs=115.8
Q ss_pred CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEE-EcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 020756 29 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL-TTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS 107 (321)
Q Consensus 29 ~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l-~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~ 107 (321)
+-...-.|||||..|+.. |++.+.-+ +..|. .+.+....+.+|++++|.|++..+++|.| +.
T Consensus 105 ~A~~~gRW~~dGtgLlt~-------------GEDG~iKiWSrsGM-LRStl~Q~~~~v~c~~W~p~S~~vl~c~g---~h 167 (737)
T KOG1524|consen 105 AAISSGRWSPDGAGLLTA-------------GEDGVIKIWSRSGM-LRSTVVQNEESIRCARWAPNSNSIVFCQG---GH 167 (737)
T ss_pred hhhhhcccCCCCceeeee-------------cCCceEEEEeccch-HHHHHhhcCceeEEEEECCCCCceEEecC---Ce
Confidence 344456799999998775 55544444 44554 33333346789999999999999998744 36
Q ss_pred EEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeC-CCeeeEEEccCCCEEEE
Q 020756 108 ATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMT 183 (321)
Q Consensus 108 i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~-~~~~~~~wSpdG~~l~t 183 (321)
+.|=.+..+ .+... |++-+-++.|||...+|+++| .|...++||-....+..+..+ +.+++++|.|| +.++.
T Consensus 168 ~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG---ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v 243 (737)
T KOG1524|consen 168 ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGG---EDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLL 243 (737)
T ss_pred EEEeecccccceeEEeccCcEEEEeecCccccceeecC---CceeEEeecccCcccccCChhccceeeeeeccc-cceee
Confidence 777666433 23333 899999999999999999999 999999999854444333322 38999999999 66666
Q ss_pred EEcCCceeecCcEEEEeecCceeEEeccCceEEEEEecCCCCCCC
Q 020756 184 ATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFG 228 (321)
Q Consensus 184 ~~s~~rl~~d~~v~iw~~~g~~l~~~~~~~~~~~~w~P~~~~~~~ 228 (321)
++ -|.++ +.+...+.+.+++|+||+..+..
T Consensus 244 ~S-------~nt~R--------~~~p~~GSifnlsWS~DGTQ~a~ 273 (737)
T KOG1524|consen 244 WS-------YNTAR--------FSSPRVGSIFNLSWSADGTQATC 273 (737)
T ss_pred ee-------eeeee--------ecCCCccceEEEEEcCCCceeec
Confidence 66 34444 33445567888899988876654
No 129
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.33 E-value=4.7e-11 Score=115.86 Aligned_cols=177 Identities=16% Similarity=0.115 Sum_probs=135.2
Q ss_pred CCCceEEEEEcCCcCCCC-ce-e----eeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCcee
Q 020756 2 GSPASVQIYACGKDLQSQ-PL-A----RRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG 75 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~-~i-~----~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~ 75 (321)
+++..++||++|.-.+.. ++ - ....+.-++-.+.-+|+...|+... .|++-+ ||.++ +.. -.
T Consensus 431 S~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~S---qDktaK-------iW~le-~~~-l~ 498 (775)
T KOG0319|consen 431 SQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGS---QDKTAK-------IWDLE-QLR-LL 498 (775)
T ss_pred cCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecc---ccccee-------eeccc-Cce-EE
Confidence 678899999999811111 11 1 1222445677788899876665542 455544 44444 222 22
Q ss_pred eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEE
Q 020756 76 LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF 152 (321)
Q Consensus 76 ~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~i 152 (321)
-+--.|...|-++.|+|..+.+++++| |.+++||.+. ...+.+| |...|-...|--+|++|++++ .+|-|++
T Consensus 499 ~vLsGH~RGvw~V~Fs~~dq~laT~Sg--D~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~---adGliKl 573 (775)
T KOG0319|consen 499 GVLSGHTRGVWCVSFSKNDQLLATCSG--DKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAG---ADGLIKL 573 (775)
T ss_pred EEeeCCccceEEEEeccccceeEeccC--CceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEecc---CCCcEEE
Confidence 223358899999999999999999855 7799999994 4566777 778888899999999999999 9999999
Q ss_pred EECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756 153 WDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 201 (321)
Q Consensus 153 wD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~ 201 (321)
|++++.+|+.++..| .+..+.-+|++.+|+|++. |+.|.+|.=
T Consensus 574 Wnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~------Dg~i~~wkD 618 (775)
T KOG0319|consen 574 WNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGG------DGRIIFWKD 618 (775)
T ss_pred EeccchhhhhhhhhccceeEEEeecCccceeEecCC------CeEEEEeec
Confidence 999999999999988 6888999999999999995 999999974
No 130
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2e-10 Score=101.90 Aligned_cols=180 Identities=14% Similarity=0.143 Sum_probs=131.4
Q ss_pred ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcC-CCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC
Q 020756 27 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD-GTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP 105 (321)
Q Consensus 27 f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~-g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~ 105 (321)
+......+.++++|+.+++.+..| .|.+.+.. +...+.+. .++..|..+.|--....++....-.|
T Consensus 13 ~~~~i~sl~fs~~G~~litss~dD------------sl~LYd~~~g~~~~ti~-skkyG~~~~~Fth~~~~~i~sStk~d 79 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLLITSSEDD------------SLRLYDSLSGKQVKTIN-SKKYGVDLACFTHHSNTVIHSSTKED 79 (311)
T ss_pred CCCceeEEEecCCCCEEEEecCCC------------eEEEEEcCCCceeeEee-cccccccEEEEecCCceEEEccCCCC
Confidence 556778999999999998854221 23444443 33333333 45677888888665555544333346
Q ss_pred CeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCCCeeeEEEccCCCEEE
Q 020756 106 ASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFM 182 (321)
Q Consensus 106 ~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~ 182 (321)
.+|+..++..+ -++-| |...|+++.-+|-+..+++++ .|.+|++||++..++...+.......++|+|.|-++|
T Consensus 80 ~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S---~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA 156 (311)
T KOG1446|consen 80 DTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSS---LDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFA 156 (311)
T ss_pred CceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecc---cCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEE
Confidence 68888888544 34445 889999999999999999999 9999999999988887777666556679999999999
Q ss_pred EEEcCCceeecCcEEEEeec---Ccee--EE---eccCceEEEEEecCCCCCCC
Q 020756 183 TATTAPRLQIDNGIKIFHHN---GSLF--FK---KMFDKLFQAEWKPVSPDKFG 228 (321)
Q Consensus 183 t~~s~~rl~~d~~v~iw~~~---g~~l--~~---~~~~~~~~~~w~P~~~~~~~ 228 (321)
++.. .+.|+|||+. .... +. ....+..++.|+|++..++-
T Consensus 157 ~~~~------~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl 204 (311)
T KOG1446|consen 157 LANG------SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL 204 (311)
T ss_pred EecC------CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEE
Confidence 9993 5599999983 2222 22 34568899999999998774
No 131
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=8.6e-11 Score=104.38 Aligned_cols=201 Identities=19% Similarity=0.278 Sum_probs=132.2
Q ss_pred CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcC-CCceeeeecCC
Q 020756 3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD-GTHEGLVPLRK 81 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~-g~~~~~v~l~~ 81 (321)
..|+|-||++.++. .-...+.+-..++.+.||++|+.|+... +| . .+.++++. |....++ ..
T Consensus 43 ~nG~vvI~D~~T~~---iar~lsaH~~pi~sl~WS~dgr~LltsS-~D---------~--si~lwDl~~gs~l~ri--rf 105 (405)
T KOG1273|consen 43 ANGRVVIYDFDTFR---IARMLSAHVRPITSLCWSRDGRKLLTSS-RD---------W--SIKLWDLLKGSPLKRI--RF 105 (405)
T ss_pred cCCcEEEEEccccc---hhhhhhccccceeEEEecCCCCEeeeec-CC---------c--eeEEEeccCCCceeEE--Ec
Confidence 36899999999953 4444455556788999999999997742 21 1 14455543 3333333 35
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe----CCcC----eeeEEEcCCCCeEEEEccCCCCCcEEEE
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL----GSGP----YNTVRWNPKGKFLCLAGFGNLPGDMAFW 153 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~----~~~~----~~~~~~sPdG~~l~~~g~~n~~g~i~iw 153 (321)
..||..++|+|..+..+++. -|.....+.++.. ++++. ..+. ..+..|.+.|++|+++. ..|.+.||
T Consensus 106 ~spv~~~q~hp~k~n~~va~-~~~~sp~vi~~s~-~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGt---sKGkllv~ 180 (405)
T KOG1273|consen 106 DSPVWGAQWHPRKRNKCVAT-IMEESPVVIDFSD-PKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGT---SKGKLLVY 180 (405)
T ss_pred cCccceeeeccccCCeEEEE-EecCCcEEEEecC-CceeeccCCCccccccccccccccCCCCEEEEec---CcceEEEE
Confidence 68999999999777666553 2333334444432 33332 1111 22346899999999987 88999999
Q ss_pred ECCCCeEEEeeeCCC---e-----------------------------------------------------eeEEEccC
Q 020756 154 DYVDGKQLGTTRAEC---S-----------------------------------------------------VTSEWSPD 177 (321)
Q Consensus 154 D~~~~~~i~~~~~~~---~-----------------------------------------------------~~~~wSpd 177 (321)
|..+.+++..+.-.. + ..++||.|
T Consensus 181 ~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d 260 (405)
T KOG1273|consen 181 DAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGD 260 (405)
T ss_pred ecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCC
Confidence 998876655432110 0 11578889
Q ss_pred CCEEEEEEcCCceeecCcEEEEee-cCcee--EEecc-CceEEEEEecCCCCCCCCc
Q 020756 178 GRYFMTATTAPRLQIDNGIKIFHH-NGSLF--FKKMF-DKLFQAEWKPVSPDKFGDI 230 (321)
Q Consensus 178 G~~l~t~~s~~rl~~d~~v~iw~~-~g~~l--~~~~~-~~~~~~~w~P~~~~~~~~~ 230 (321)
|.|+..+++ ....++||.- .|.++ +++.. ..+.++.|+|-.+.+.+..
T Consensus 261 geYv~a~s~-----~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si~ 312 (405)
T KOG1273|consen 261 GEYVCAGSA-----RAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASIA 312 (405)
T ss_pred ccEEEeccc-----cceeEEEEecCCcceeeeecCCchhheeecccccceeeeeecc
Confidence 998888775 4678999997 46666 44444 5788999999988777653
No 132
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.31 E-value=3.1e-11 Score=109.86 Aligned_cols=117 Identities=20% Similarity=0.393 Sum_probs=95.1
Q ss_pred CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC--------CceeEEe--CCcCeeeEEEcCCCC-eEEEEccCCCCC
Q 020756 80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--------CRPILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPG 148 (321)
Q Consensus 80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~--------~~~~~~~--~~~~~~~~~~sPdG~-~l~~~g~~n~~g 148 (321)
.|.++|.++.|+|..+..+. +|..|.++.||++- .+++..+ |...+..+.|+|... .|+++| .|.
T Consensus 79 GHt~~vLDi~w~PfnD~vIA-SgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag---~Dn 154 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIA-SGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG---SDN 154 (472)
T ss_pred CccccccccccCccCCceee-cCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc---CCc
Confidence 48999999999997664433 27889999999872 2345555 788899999999765 566677 788
Q ss_pred cEEEEECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee
Q 020756 149 DMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF 206 (321)
Q Consensus 149 ~i~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l 206 (321)
.|.+||+.+++.+.++.++ .+.+++|+.||.+|+|++ .|..|+|||. .|..+
T Consensus 155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~Ttc------kDKkvRv~dpr~~~~v 208 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTC------KDKKVRVIDPRRGTVV 208 (472)
T ss_pred eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeec------ccceeEEEcCCCCcEe
Confidence 9999999999888888765 688899999999999998 5999999998 34444
No 133
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=2.7e-12 Score=124.18 Aligned_cols=138 Identities=22% Similarity=0.351 Sum_probs=111.2
Q ss_pred CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756 80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 156 (321)
Q Consensus 80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~ 156 (321)
.|+.+|.++.|+++-..|+. |..+++|++||+. .+.++++ |...+..+.|+|.|.|.+.++ .|+++.+||.+
T Consensus 68 ~hespIeSl~f~~~E~Llaa--gsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gS---tdtd~~iwD~R 142 (825)
T KOG0267|consen 68 GHESPIESLTFDTSERLLAA--GSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGS---TDTDLKIWDIR 142 (825)
T ss_pred ccCCcceeeecCcchhhhcc--cccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecccc---ccccceehhhh
Confidence 48999999999998766665 7888999999994 5556666 778888999999999997777 89999999998
Q ss_pred CCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee--EEeccCceEEEEEecCCCCCCC
Q 020756 157 DGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFDKLFQAEWKPVSPDKFG 228 (321)
Q Consensus 157 ~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~~~~~~~~~~w~P~~~~~~~ 228 (321)
..-|+..+..| .+..+.|+|||++++.++. |+.++|||.. |+++ +..|...+..+.++|..-.+.+
T Consensus 143 k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e------d~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~ 213 (825)
T KOG0267|consen 143 KKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE------DNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAP 213 (825)
T ss_pred ccCceeeecCCcceeEEEeecCCCceeeccCC------cceeeeecccccccccccccccccccccccCchhhhhcc
Confidence 77788888776 4556899999999999994 8999999994 5555 4556666667777776544333
No 134
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.31 E-value=4.1e-11 Score=106.57 Aligned_cols=171 Identities=18% Similarity=0.236 Sum_probs=121.8
Q ss_pred CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCcee---eeec-
Q 020756 4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG---LVPL- 79 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~---~v~l- 79 (321)
...|.||++. ++.+....-.+.......-||+|++|++...|.- -+.+. -.+.-+|.... ..+|
T Consensus 208 dt~i~lw~lk----Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpD---VkVwE-----~~f~kdG~fqev~rvf~Lk 275 (420)
T KOG2096|consen 208 DTKICLWDLK----GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPD---VKVWE-----PIFTKDGTFQEVKRVFSLK 275 (420)
T ss_pred CCcEEEEecC----CceeeeeccccccccceeeCCCCcEEEEecCCCC---ceEEE-----EEeccCcchhhhhhhheec
Confidence 4467888885 3667777777777778889999999999754421 11110 11223443322 2223
Q ss_pred CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC--------ceeEEe-------CCcCeeeEEEcCCCCeEEEEccC
Q 020756 80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--------RPILEL-------GSGPYNTVRWNPKGKFLCLAGFG 144 (321)
Q Consensus 80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~--------~~~~~~-------~~~~~~~~~~sPdG~~l~~~g~~ 144 (321)
.|...|+.++|||++++++++ ..||+++|||.+- +.+.++ +..++ .+..||.|+.|+++.
T Consensus 276 GH~saV~~~aFsn~S~r~vtv--SkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~-RL~lsP~g~~lA~s~-- 350 (420)
T KOG2096|consen 276 GHQSAVLAAAFSNSSTRAVTV--SKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPV-RLELSPSGDSLAVSF-- 350 (420)
T ss_pred cchhheeeeeeCCCcceeEEE--ecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCce-EEEeCCCCcEEEeec--
Confidence 388899999999999999997 6789999998731 111221 23344 789999999998873
Q ss_pred CCCCcEEEEECCCCeEEEeeeC---CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEe
Q 020756 145 NLPGDMAFWDYVDGKQLGTTRA---ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 200 (321)
Q Consensus 145 n~~g~i~iwD~~~~~~i~~~~~---~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~ 200 (321)
..+|.+|..++++..-.++. .+|++++|++||+|+++++ |..+++..
T Consensus 351 --gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-------dr~vrv~~ 400 (420)
T KOG2096|consen 351 --GSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-------DRYVRVIR 400 (420)
T ss_pred --CCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-------ceeeeeec
Confidence 35899999998876655543 3899999999999999999 88888876
No 135
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=9.9e-11 Score=115.71 Aligned_cols=207 Identities=11% Similarity=0.128 Sum_probs=154.0
Q ss_pred CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeeccee-EEEEEcCCCceeeee-cCC
Q 020756 4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESK-LNYLTTDGTHEGLVP-LRK 81 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~-l~~l~~~g~~~~~v~-l~~ 81 (321)
-|.|++|++.- +..+....-+.+.+..+.|+|++..++.. |.+. |..|+-.. ..+..+ +.|
T Consensus 30 sG~IQlWDYRM---~tli~rFdeHdGpVRgv~FH~~qplFVSG-------------GDDykIkVWnYk~-rrclftL~GH 92 (1202)
T KOG0292|consen 30 SGVIQLWDYRM---GTLIDRFDEHDGPVRGVDFHPTQPLFVSG-------------GDDYKIKVWNYKT-RRCLFTLLGH 92 (1202)
T ss_pred Cceeeeehhhh---hhHHhhhhccCCccceeeecCCCCeEEec-------------CCccEEEEEeccc-ceehhhhccc
Confidence 47899999998 77777777778889999999998765432 1111 22222222 233333 358
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 158 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~ 158 (321)
-+.|..+.|++.=-.|+.+ +.|.+|+||+.. .+.+..+ |...|.|..|+|...+|++++ +|.+|+|||+...
T Consensus 93 lDYVRt~~FHheyPWIlSA--SDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaS---LDQTVRVWDisGL 167 (1202)
T KOG0292|consen 93 LDYVRTVFFHHEYPWILSA--SDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSAS---LDQTVRVWDISGL 167 (1202)
T ss_pred cceeEEeeccCCCceEEEc--cCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEec---ccceEEEEeecch
Confidence 8999999999998888886 557899999974 3444444 888999999999999999999 9999999998632
Q ss_pred eE-----------------------------EEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee-
Q 020756 159 KQ-----------------------------LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF- 206 (321)
Q Consensus 159 ~~-----------------------------i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l- 206 (321)
++ ...+++| .+.-++|+|.-..|++++. |..|+||..+....
T Consensus 168 Rkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~D------DRqVKlWrmnetKaW 241 (1202)
T KOG0292|consen 168 RKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGAD------DRQVKLWRMNETKAW 241 (1202)
T ss_pred hccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCC------cceeeEEEeccccce
Confidence 11 1123344 4566899999999999995 99999999865432
Q ss_pred ----EEeccCceEEEEEecCCCCCCCCc-chhhhccc
Q 020756 207 ----FKKMFDKLFQAEWKPVSPDKFGDI-SELIKSVG 238 (321)
Q Consensus 207 ----~~~~~~~~~~~~w~P~~~~~~~~~-~~~~~~~~ 238 (321)
..+|+..|..+.|+|....|++.. |..+..|.
T Consensus 242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwD 278 (1202)
T KOG0292|consen 242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWD 278 (1202)
T ss_pred eehhhhcccCCcceEEecCccceeEecCCCccEEEEe
Confidence 667999999999999888888763 54444443
No 136
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.30 E-value=6.5e-11 Score=116.27 Aligned_cols=169 Identities=16% Similarity=0.291 Sum_probs=118.1
Q ss_pred CceEEEEEcCCcCCCCceeeeecc-----cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee
Q 020756 4 PASVQIYACGKDLQSQPLARRSFF-----RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP 78 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f-----~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~ 78 (321)
-|.|.+|++.++ +..++|+ +..+..+.-.--++.++.. |.+.+..++.++...-.-.
T Consensus 469 ~G~Id~fNmQSG-----i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa-------------~~~Gilkfw~f~~k~l~~~ 530 (910)
T KOG1539|consen 469 KGTIDRFNMQSG-----IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSA-------------GADGILKFWDFKKKVLKKS 530 (910)
T ss_pred CCeEEEEEcccC-----eeecccccCccccCceeEEEecCCCceEEEc-------------cCcceEEEEecCCcceeee
Confidence 467888888762 4555664 2333333322222222221 2222343343333233333
Q ss_pred cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC
Q 020756 79 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 155 (321)
Q Consensus 79 l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~ 155 (321)
+.-...+..+..+-....|+++ ..+-.|.++|..+. .++.| |...++++.|||||++|++++ +|++|++||+
T Consensus 531 l~l~~~~~~iv~hr~s~l~a~~--~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisas---mD~tIr~wDl 605 (910)
T KOG1539|consen 531 LRLGSSITGIVYHRVSDLLAIA--LDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISAS---MDSTIRTWDL 605 (910)
T ss_pred eccCCCcceeeeeehhhhhhhh--cCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEee---cCCcEEEEec
Confidence 3445667778888888888875 55668999999654 44555 788999999999999999999 9999999999
Q ss_pred CCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeec-CcEEEEee
Q 020756 156 VDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQID-NGIKIFHH 201 (321)
Q Consensus 156 ~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d-~~v~iw~~ 201 (321)
-++.+|-.+.-. .++.+.+||+|.||||+. +| ++|++|.-
T Consensus 606 pt~~lID~~~vd~~~~sls~SPngD~LAT~H------vd~~gIylWsN 647 (910)
T KOG1539|consen 606 PTGTLIDGLLVDSPCTSLSFSPNGDFLATVH------VDQNGIYLWSN 647 (910)
T ss_pred cCcceeeeEecCCcceeeEECCCCCEEEEEE------ecCceEEEEEc
Confidence 999998777654 678899999999999999 46 89999963
No 137
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.30 E-value=6.7e-10 Score=96.78 Aligned_cols=156 Identities=17% Similarity=0.287 Sum_probs=115.7
Q ss_pred eeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc-C--CCeEEEEeCC-------C-ceeEEe--CCcCeee
Q 020756 62 SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF-M--PASATIFNKK-------C-RPILEL--GSGPYNT 128 (321)
Q Consensus 62 ~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~-~--~~~i~i~d~~-------~-~~~~~~--~~~~~~~ 128 (321)
+.+.+|++..+ .+...++...+|..+.|+++|.+++++... | .+.|.+||++ . +++..+ +...++.
T Consensus 74 ~t~kLWDv~tG-k~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~ 152 (327)
T KOG0643|consen 74 QTAKLWDVETG-KQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITS 152 (327)
T ss_pred ceeEEEEcCCC-cEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceee
Confidence 34556666554 344445567899999999999988886422 2 3478899985 2 346666 5678899
Q ss_pred EEEcCCCCeEEEEccCCCCCcEEEEECCCCe-EEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce
Q 020756 129 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK-QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 205 (321)
Q Consensus 129 ~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~-~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~ 205 (321)
..|+|-|++|+.+. .+|.|.+||.++++ .+...+.| .|+++++|+|..+++|++. |.+-+|||+..-.
T Consensus 153 a~Wg~l~~~ii~Gh---e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~------Dttakl~D~~tl~ 223 (327)
T KOG0643|consen 153 ALWGPLGETIIAGH---EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK------DTTAKLVDVRTLE 223 (327)
T ss_pred eeecccCCEEEEec---CCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc------Cccceeeecccee
Confidence 99999999999998 89999999999984 44443444 8999999999999999994 9999999986543
Q ss_pred e-EEe-ccCceEEEEEecCCCCCC
Q 020756 206 F-FKK-MFDKLFQAEWKPVSPDKF 227 (321)
Q Consensus 206 l-~~~-~~~~~~~~~w~P~~~~~~ 227 (321)
+ ... ....|..++.+|....++
T Consensus 224 v~Kty~te~PvN~aaisP~~d~Vi 247 (327)
T KOG0643|consen 224 VLKTYTTERPVNTAAISPLLDHVI 247 (327)
T ss_pred eEEEeeecccccceecccccceEE
Confidence 3 222 234677777777544433
No 138
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=7.9e-12 Score=120.95 Aligned_cols=199 Identities=14% Similarity=0.184 Sum_probs=142.9
Q ss_pred eEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCe
Q 020756 6 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV 85 (321)
Q Consensus 6 ~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v 85 (321)
.|-||.+... .++.........+-.+.++++-..|+..+. .|. |.+|++......+.-..|...+
T Consensus 51 k~~L~~i~kp---~~i~S~~~hespIeSl~f~~~E~Llaagsa----------sgt--iK~wDleeAk~vrtLtgh~~~~ 115 (825)
T KOG0267|consen 51 KVNLWAIGKP---NAITSLTGHESPIESLTFDTSERLLAAGSA----------SGT--IKVWDLEEAKIVRTLTGHLLNI 115 (825)
T ss_pred eeccccccCC---chhheeeccCCcceeeecCcchhhhccccc----------CCc--eeeeehhhhhhhhhhhccccCc
Confidence 3345555441 223333344455556667766444433210 133 4444554443333333578889
Q ss_pred EEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEE
Q 020756 86 HDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG 162 (321)
Q Consensus 86 ~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~ 162 (321)
..+.|+|.|.+++. |..|+.+++||.+ .++.+.+ |...++.++|+|+|++++.++ .|..++|||+..|+.+.
T Consensus 116 ~sv~f~P~~~~~a~--gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~---ed~tvki~d~~agk~~~ 190 (825)
T KOG0267|consen 116 TSVDFHPYGEFFAS--GSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGG---EDNTVKIWDLTAGKLSK 190 (825)
T ss_pred ceeeeccceEEecc--ccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccC---Ccceeeeeccccccccc
Confidence 99999999999855 7889999999996 5566666 677889999999999999998 78999999999999999
Q ss_pred eeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-eeEE--eccCceEEEEEecCCCCCCCCc
Q 020756 163 TTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFK--KMFDKLFQAEWKPVSPDKFGDI 230 (321)
Q Consensus 163 ~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-~l~~--~~~~~~~~~~w~P~~~~~~~~~ 230 (321)
.|..| .+..++|+|..-+++++++ |..+++||+..- .+-. .....+....|+|+...+++..
T Consensus 191 ef~~~e~~v~sle~hp~e~Lla~Gs~------d~tv~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~ 257 (825)
T KOG0267|consen 191 EFKSHEGKVQSLEFHPLEVLLAPGSS------DRTVRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGE 257 (825)
T ss_pred ccccccccccccccCchhhhhccCCC------CceeeeeccceeEEeeccCCccCCceeeeecCCceeeecCc
Confidence 99866 6777899999888888885 999999998643 3322 2345788889999887777653
No 139
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.29 E-value=6.6e-11 Score=104.01 Aligned_cols=199 Identities=13% Similarity=0.254 Sum_probs=136.3
Q ss_pred eEEEEEcCCcCCCC-------ceeeee-cccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee-
Q 020756 6 SVQIYACGKDLQSQ-------PLARRS-FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL- 76 (321)
Q Consensus 6 ~v~v~~~~~~~~~~-------~i~~~~-~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~- 76 (321)
...||.||..- ++ .++... ---.....+.|-|++..++.++ ..+|.+++........
T Consensus 94 ~aaiw~ipe~~-~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-------------dn~i~l~~l~ess~~va 159 (370)
T KOG1007|consen 94 GAAIWQIPEPL-GQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-------------DNNIVLWSLDESSKIVA 159 (370)
T ss_pred eEEEEeccccc-CccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-------------cCceEEEEcccCcchhe
Confidence 56899999732 11 111111 0012345689999999999984 2235555554432211
Q ss_pred -ee----cCCCCCeEEEEECc--CCCEEEEEEccCCCeEEEEeCCCc-eeEEe---CCcCeeeEEEcCCCCeE-EEEccC
Q 020756 77 -VP----LRKEGPVHDVQWSY--SGSEFAVVYGFMPASATIFNKKCR-PILEL---GSGPYNTVRWNPKGKFL-CLAGFG 144 (321)
Q Consensus 77 -v~----l~~~~~v~~~~wsP--~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~---~~~~~~~~~~sPdG~~l-~~~g~~ 144 (321)
+. ..+.....+-+||| ||..+++. .++++..||+++. ....+ |...+..+.|+|+-+++ +++|
T Consensus 160 ev~ss~s~e~~~~ftsg~WspHHdgnqv~tt---~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g-- 234 (370)
T KOG1007|consen 160 EVLSSESAEMRHSFTSGAWSPHHDGNQVATT---SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG-- 234 (370)
T ss_pred eecccccccccceecccccCCCCccceEEEe---CCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcC--
Confidence 11 12455677889999 88899984 4679999999753 33333 66779999999998765 5566
Q ss_pred CCCCcEEEEECCCC-eEEEeeeCC--CeeeEEEccC-CCEEEEEEcCCceeecCcEEEEeecC-----------------
Q 020756 145 NLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPD-GRYFMTATTAPRLQIDNGIKIFHHNG----------------- 203 (321)
Q Consensus 145 n~~g~i~iwD~~~~-~~i~~~~~~--~~~~~~wSpd-G~~l~t~~s~~rl~~d~~v~iw~~~g----------------- 203 (321)
.||.|+|||.+.- ..+..+..| .+.++.|.|- .++|+++++ |..|.+|-...
T Consensus 235 -DdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S------Ds~V~Lsca~svSSE~qi~~~~dese~e 307 (370)
T KOG1007|consen 235 -DDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS------DSAVNLSCASSVSSEQQIEFEDDESESE 307 (370)
T ss_pred -CCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC------CceeEEEeccccccccccccccccccCc
Confidence 8999999998754 567776665 7889999995 677778876 88888884310
Q ss_pred -------------cee--EEeccCceEEEEEecCCCCCCCCc
Q 020756 204 -------------SLF--FKKMFDKLFQAEWKPVSPDKFGDI 230 (321)
Q Consensus 204 -------------~~l--~~~~~~~~~~~~w~P~~~~~~~~~ 230 (321)
.++ +..|.+.||.+.|+-..|++|..+
T Consensus 308 ~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASL 349 (370)
T KOG1007|consen 308 DEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASL 349 (370)
T ss_pred chhhHHhcccccccccccccccccceEEEeeccCCCeeEEEe
Confidence 011 556778999999999999999763
No 140
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.29 E-value=9.8e-10 Score=102.16 Aligned_cols=206 Identities=13% Similarity=0.157 Sum_probs=128.4
Q ss_pred CceEEEEEcCCcCCCC--ceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee-cC
Q 020756 4 PASVQIYACGKDLQSQ--PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-LR 80 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~--~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~-l~ 80 (321)
.+.|.+|++... +. .+..... ....+.+.++|+|++|++.... . +...+|.++.++.....+. +.
T Consensus 56 ~~~i~~~~~~~~--g~l~~~~~~~~-~~~p~~i~~~~~g~~l~v~~~~----~-----~~v~v~~~~~~g~~~~~~~~~~ 123 (330)
T PRK11028 56 EFRVLSYRIADD--GALTFAAESPL-PGSPTHISTDHQGRFLFSASYN----A-----NCVSVSPLDKDGIPVAPIQIIE 123 (330)
T ss_pred CCcEEEEEECCC--CceEEeeeecC-CCCceEEEECCCCCEEEEEEcC----C-----CeEEEEEECCCCCCCCceeecc
Confidence 467888888631 22 1222222 2356789999999999875210 1 2223444433332222221 22
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeE-------Ee-CCcCeeeEEEcCCCCeEEEEccCCCCCcEE
Q 020756 81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PIL-------EL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMA 151 (321)
Q Consensus 81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~-------~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~ 151 (321)
.....+.++++|+|++++++ ...++.|.+||+... .+. .+ .......+.|+|+|++|+++.. .++.|.
T Consensus 124 ~~~~~~~~~~~p~g~~l~v~-~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~--~~~~v~ 200 (330)
T PRK11028 124 GLEGCHSANIDPDNRTLWVP-CLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE--LNSSVD 200 (330)
T ss_pred CCCcccEeEeCCCCCEEEEe-eCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec--CCCEEE
Confidence 33456889999999988776 455679999998542 111 12 1223457899999999988762 368999
Q ss_pred EEECCC--C--eEEEeeeCC--------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec--Ccee-EEecc---Cc
Q 020756 152 FWDYVD--G--KQLGTTRAE--------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSLF-FKKMF---DK 213 (321)
Q Consensus 152 iwD~~~--~--~~i~~~~~~--------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~--g~~l-~~~~~---~~ 213 (321)
+||++. + +.+..+... ....+.++|||++|+++.. .++.|.+|+++ +..+ ...+. ..
T Consensus 201 v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~-----~~~~I~v~~i~~~~~~~~~~~~~~~~~~ 275 (330)
T PRK11028 201 VWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR-----TASLISVFSVSEDGSVLSFEGHQPTETQ 275 (330)
T ss_pred EEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC-----CCCeEEEEEEeCCCCeEEEeEEEecccc
Confidence 999973 3 334333211 2235889999999999853 47899999983 3322 22221 24
Q ss_pred eEEEEEecCCCCCCCC
Q 020756 214 LFQAEWKPVSPDKFGD 229 (321)
Q Consensus 214 ~~~~~w~P~~~~~~~~ 229 (321)
...+.++|++..+|..
T Consensus 276 p~~~~~~~dg~~l~va 291 (330)
T PRK11028 276 PRGFNIDHSGKYLIAA 291 (330)
T ss_pred CCceEECCCCCEEEEE
Confidence 5578999999999865
No 141
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.29 E-value=9.1e-11 Score=115.27 Aligned_cols=203 Identities=12% Similarity=0.080 Sum_probs=149.5
Q ss_pred ceEEEEEcCCcCCCCceeeeecc---cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee--ec
Q 020756 5 ASVQIYACGKDLQSQPLARRSFF---RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV--PL 79 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~~~~f---~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v--~l 79 (321)
.+.+.|++.+...|+.+-..+-| ......+.-++.|+..++-.+. |...+|.++..-- .... .-
T Consensus 422 ~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~----------G~Id~fNmQSGi~-r~sf~~~~ 490 (910)
T KOG1539|consen 422 RSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSK----------GTIDRFNMQSGIH-RKSFGDSP 490 (910)
T ss_pred ceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccC----------CeEEEEEcccCee-ecccccCc
Confidence 46788888886545544333322 2344566677888877764321 5555666643211 1111 12
Q ss_pred CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756 80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 157 (321)
Q Consensus 80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~ 157 (321)
.|.++|.+++....++.++.+ +.+|.+.+||.+.. .+.++ -...+..+.++-....++++. .+-.|.++|..+
T Consensus 491 ah~~~V~gla~D~~n~~~vsa--~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~---ddf~I~vvD~~t 565 (910)
T KOG1539|consen 491 AHKGEVTGLAVDGTNRLLVSA--GADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL---DDFSIRVVDVVT 565 (910)
T ss_pred cccCceeEEEecCCCceEEEc--cCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc---CceeEEEEEchh
Confidence 488999999999888887775 56899999999665 44555 245677888888888888876 788999999999
Q ss_pred CeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEeccC-ceEEEEEecCCCCCCCC
Q 020756 158 GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMFD-KLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 158 ~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~~~~-~~~~~~w~P~~~~~~~~ 229 (321)
.+.+..+.+| .+++++|||||++|++++ .|..|++||+ +|.++-....+ .+..++++|.+..+.+.
T Consensus 566 ~kvvR~f~gh~nritd~~FS~DgrWlisas------mD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 566 RKVVREFWGHGNRITDMTFSPDGRWLISAS------MDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLATV 635 (910)
T ss_pred hhhhHHhhccccceeeeEeCCCCcEEEEee------cCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEEEE
Confidence 9999999877 799999999999999999 5999999998 77787555554 67789999998877765
No 142
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.29 E-value=8e-11 Score=106.68 Aligned_cols=146 Identities=16% Similarity=0.309 Sum_probs=109.1
Q ss_pred CCCCeEEEEECc--CCCEEEEEEccCCCeEEEEeCCCceeE------EeCCcCeeeEEEcCCCC-eEEEEccCCCCCcEE
Q 020756 81 KEGPVHDVQWSY--SGSEFAVVYGFMPASATIFNKKCRPIL------ELGSGPYNTVRWNPKGK-FLCLAGFGNLPGDMA 151 (321)
Q Consensus 81 ~~~~v~~~~wsP--~g~~l~~~~g~~~~~i~i~d~~~~~~~------~~~~~~~~~~~~sPdG~-~l~~~g~~n~~g~i~ 151 (321)
|.+-=+.+.||| .|. |+. |+.-..|++|........ .-|...|..+.|||..+ .|++|+ .||.|.
T Consensus 210 hk~EGy~LdWSp~~~g~-Lls--GDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS---~DgsIr 283 (440)
T KOG0302|consen 210 HKGEGYGLDWSPIKTGR-LLS--GDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCS---CDGSIR 283 (440)
T ss_pred cCccceeeecccccccc-ccc--CccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeee---cCceEE
Confidence 556678999999 332 332 554557899977443222 12788899999999765 556677 999999
Q ss_pred EEECCCC---eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee----cCcee--EEeccCceEEEEEe
Q 020756 152 FWDYVDG---KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH----NGSLF--FKKMFDKLFQAEWK 220 (321)
Q Consensus 152 iwD~~~~---~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~----~g~~l--~~~~~~~~~~~~w~ 220 (321)
|||++++ .++.+ ++| .+..++|+.+-.+||++.. |+.++|||+ .|+.+ ++.|...++.+.|+
T Consensus 284 IWDiRs~~~~~~~~~-kAh~sDVNVISWnr~~~lLasG~D------dGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~ 356 (440)
T KOG0302|consen 284 IWDIRSGPKKAAVST-KAHNSDVNVISWNRREPLLASGGD------DGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWH 356 (440)
T ss_pred EEEecCCCccceeEe-eccCCceeeEEccCCcceeeecCC------CceEEEEEhhhccCCCcceeEEeccCCeeEEEec
Confidence 9999988 45554 444 7889999999889999984 889999998 34454 77899999999999
Q ss_pred cCCCCCCCC--cchhhhcccc
Q 020756 221 PVSPDKFGD--ISELIKSVGS 239 (321)
Q Consensus 221 P~~~~~~~~--~~~~~~~~~~ 239 (321)
|....++.. .++.+..|.+
T Consensus 357 p~e~s~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 357 PHEDSVIAASGEDNQITIWDL 377 (440)
T ss_pred cccCceEEeccCCCcEEEEEe
Confidence 988777754 3555555655
No 143
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.28 E-value=3.2e-11 Score=104.06 Aligned_cols=137 Identities=15% Similarity=0.270 Sum_probs=115.0
Q ss_pred CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756 80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 157 (321)
Q Consensus 80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~ 157 (321)
.|.+.|..+.|.-..+.|+.. ..++++++||.+. ..+.++ -..+++++.+|++|++|.++ ..+.|.|||.++
T Consensus 141 ghtg~Ir~v~wc~eD~~iLSS--add~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia----~gssV~Fwdaks 214 (334)
T KOG0278|consen 141 GHTGGIRTVLWCHEDKCILSS--ADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIA----YGSSVKFWDAKS 214 (334)
T ss_pred CCCCcceeEEEeccCceEEee--ccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEe----cCceeEEecccc
Confidence 378999999998877777774 5688999999964 466666 47899999999999998887 457899999999
Q ss_pred CeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee--E-EeccCceEEEEEecCCCCCCC
Q 020756 158 GKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF--F-KKMFDKLFQAEWKPVSPDKFG 228 (321)
Q Consensus 158 ~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l--~-~~~~~~~~~~~w~P~~~~~~~ 228 (321)
...+..++.+ ++...+.+|+-.++++++ .|..++.||| +|+.+ + ++|++.|..+.|+|++....+
T Consensus 215 f~~lKs~k~P~nV~SASL~P~k~~fVaGg------ed~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAs 284 (334)
T KOG0278|consen 215 FGLLKSYKMPCNVESASLHPKKEFFVAGG------EDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYAS 284 (334)
T ss_pred ccceeeccCccccccccccCCCceEEecC------cceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeec
Confidence 9999999888 788899999998888888 4888999998 46554 3 789999999999999864443
No 144
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.28 E-value=1.4e-11 Score=109.29 Aligned_cols=101 Identities=23% Similarity=0.398 Sum_probs=85.7
Q ss_pred eEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCc
Q 020756 118 ILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNG 195 (321)
Q Consensus 118 ~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~ 195 (321)
..++.....+++.||+.|.+|+++. .+|.|-|||+.+...-..+.+| .+++++||+||++|+|++. |+.
T Consensus 18 ~~tld~~~a~~~~Fs~~G~~lAvGc---~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~------D~s 88 (405)
T KOG1273|consen 18 THTLDNPLAECCQFSRWGDYLAVGC---ANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR------DWS 88 (405)
T ss_pred ceeccCCccceEEeccCcceeeeec---cCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC------Cce
Confidence 3445445589999999999999999 8999999999998766667776 8999999999999999994 999
Q ss_pred EEEEee-cCceeEEeccC-ceEEEEEecCCCCCC
Q 020756 196 IKIFHH-NGSLFFKKMFD-KLFQAEWKPVSPDKF 227 (321)
Q Consensus 196 v~iw~~-~g~~l~~~~~~-~~~~~~w~P~~~~~~ 227 (321)
+.+||+ .|.++++..++ .++.+.|+|.....+
T Consensus 89 i~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~ 122 (405)
T KOG1273|consen 89 IKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKC 122 (405)
T ss_pred eEEEeccCCCceeEEEccCccceeeeccccCCeE
Confidence 999998 67777777664 899999999765544
No 145
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.7e-10 Score=105.78 Aligned_cols=177 Identities=12% Similarity=0.196 Sum_probs=124.6
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC-ceeeee-c
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVP-L 79 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-~~~~v~-l 79 (321)
|.+|.+|||+.|+ -..+....-...++-+|.|||||..|+.+. ......|+...+ .-...+ .
T Consensus 163 g~dg~lRv~~~Ps---~~t~l~e~~~~~eV~DL~FS~dgk~lasig-------------~d~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 163 GTDGTLRVWEWPS---MLTILEEIAHHAEVKDLDFSPDGKFLASIG-------------ADSARVWSVNTGAALARKTPF 226 (398)
T ss_pred cccceEEEEecCc---chhhhhhHhhcCccccceeCCCCcEEEEec-------------CCceEEEEeccCchhhhcCCc
Confidence 6789999999999 566666666778899999999999998863 222445554433 111111 3
Q ss_pred CCCCCeEEEEECcCC---CEEEEEEccCCCeEEEEeCC---C-c--eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCC
Q 020756 80 RKEGPVHDVQWSYSG---SEFAVVYGFMPASATIFNKK---C-R--PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPG 148 (321)
Q Consensus 80 ~~~~~v~~~~wsP~g---~~l~~~~g~~~~~i~i~d~~---~-~--~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g 148 (321)
++......|.|+-|+ ..++.......+.+.++|+. + + +.... ....+.+++.|+||+++++++ ++|
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT---~dG 303 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT---MDG 303 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec---cCC
Confidence 455667788998776 33332222222345555541 1 1 11111 456889999999999999999 899
Q ss_pred cEEEEECCCCeEEEeeeC-C--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756 149 DMAFWDYVDGKQLGTTRA-E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 203 (321)
Q Consensus 149 ~i~iwD~~~~~~i~~~~~-~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g 203 (321)
.|-|++..+.+++...+. | -|+.++|+||.+++++.++ ++...|..+..
T Consensus 304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs------~~~~~v~~l~v 355 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSS------DNEAAVTKLAV 355 (398)
T ss_pred cEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccccc------CCceeEEEEee
Confidence 999999999988877654 4 7889999999999999664 88888877643
No 146
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.26 E-value=2.7e-10 Score=100.46 Aligned_cols=180 Identities=17% Similarity=0.299 Sum_probs=126.6
Q ss_pred CCCceEEEEEcCCcCC---------CCce---eeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEc
Q 020756 2 GSPASVQIYACGKDLQ---------SQPL---ARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT 69 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~---------~~~i---~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~ 69 (321)
|+.|++.||++.+-+. ..++ ...+.++-.+.++.|-|-.+.+....+ .|. .|..++.
T Consensus 63 gadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssS--FDh---------tlKVWDt 131 (397)
T KOG4283|consen 63 GADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSS--FDH---------TLKVWDT 131 (397)
T ss_pred CCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeeccc--ccc---------eEEEeec
Confidence 7889999999998320 0111 112234445667889998887766422 222 2556666
Q ss_pred CCCceeeeecCCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCC
Q 020756 70 DGTHEGLVPLRKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGN 145 (321)
Q Consensus 70 ~g~~~~~v~l~~~~~v~~~~wsP~g~-~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n 145 (321)
+.. ...+.+..++.|+.-+|||-.. +-.++.|..+-+|++-|+... --+.+ |.+.|-.+.|||...+++..| .
T Consensus 132 nTl-Q~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatg--s 208 (397)
T KOG4283|consen 132 NTL-QEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATG--S 208 (397)
T ss_pred ccc-eeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEec--C
Confidence 665 3445556789999999999544 333444788889999999644 34444 889999999999999888765 3
Q ss_pred CCCcEEEEECCCC-eEEEeee--------------CC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756 146 LPGDMAFWDYVDG-KQLGTTR--------------AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 201 (321)
Q Consensus 146 ~~g~i~iwD~~~~-~~i~~~~--------------~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~ 201 (321)
.||.|++||++.- -|...+. +| .+..++|+.||+++++.++ |+.+++|+.
T Consensus 209 aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt------d~r~r~wn~ 275 (397)
T KOG4283|consen 209 ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT------DDRIRVWNM 275 (397)
T ss_pred CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC------ccceEEeec
Confidence 7999999998743 2222222 12 4566999999999999996 999999997
No 147
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=2.6e-10 Score=107.99 Aligned_cols=136 Identities=16% Similarity=0.319 Sum_probs=97.6
Q ss_pred cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEE-ccCCC
Q 020756 28 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVY-GFMPA 106 (321)
Q Consensus 28 ~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~-g~~~~ 106 (321)
...+.++.||++|+-++++-. -+- ....+| +..+. . +.---+++-+++-|+|.|+.++++. |+..|
T Consensus 270 ~GPVhdv~W~~s~~EF~VvyG-------fMP-Akvtif--nlr~~--~-v~df~egpRN~~~fnp~g~ii~lAGFGNL~G 336 (566)
T KOG2315|consen 270 EGPVHDVTWSPSGREFAVVYG-------FMP-AKVTIF--NLRGK--P-VFDFPEGPRNTAFFNPHGNIILLAGFGNLPG 336 (566)
T ss_pred CCCceEEEECCCCCEEEEEEe-------ccc-ceEEEE--cCCCC--E-eEeCCCCCccceEECCCCCEEEEeecCCCCC
Confidence 467779999999998888621 110 111233 33443 1 2222478999999999999998874 67789
Q ss_pred eEEEEeCC-CceeEEeCCcCeeeEEEcCCCCeEEEEccC---CCCCcEEEEECCCCeEEEeeeCC-CeeeEEEccC
Q 020756 107 SATIFNKK-CRPILELGSGPYNTVRWNPKGKFLCLAGFG---NLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPD 177 (321)
Q Consensus 107 ~i~i~d~~-~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~---n~~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSpd 177 (321)
.+.|||+. .+.+..+.-.....+.|+|||++|+++..- -.|..|+||++ +|.++....-. ....++|-|.
T Consensus 337 ~mEvwDv~n~K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~sEL~qv~W~P~ 411 (566)
T KOG2315|consen 337 DMEVWDVPNRKLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKSELLQVEWRPF 411 (566)
T ss_pred ceEEEeccchhhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhHhHhheeeeec
Confidence 99999995 456777777777889999999999998742 13788999999 67776654433 4778888764
No 148
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=7.6e-10 Score=100.05 Aligned_cols=166 Identities=21% Similarity=0.319 Sum_probs=113.1
Q ss_pred CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc--------e-
Q 020756 4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH--------E- 74 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~--------~- 74 (321)
+-.||||+-.. ..+..-++-.+.++..|.|-|.+...+++.-. +...+|-.+..+.. .
T Consensus 119 ddvVriy~kss---t~pt~Lks~sQrnvtclawRPlsaselavgCr----------~gIciW~~s~tln~~r~~~~~s~~ 185 (445)
T KOG2139|consen 119 DDVVRIYDKSS---TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR----------AGICIWSDSRTLNANRNIRMMSTH 185 (445)
T ss_pred CcEEEEeccCC---CCCceecchhhcceeEEEeccCCcceeeeeec----------ceeEEEEcCccccccccccccccc
Confidence 45788888776 45555566667789999999987765554211 11112211111100 0
Q ss_pred -eee-ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc---eeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCc
Q 020756 75 -GLV-PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGD 149 (321)
Q Consensus 75 -~~v-~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~---~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~ 149 (321)
.++ .-.-.-+|.+++|++||..++.+ ...+..|.|||.++. ++..++.+.+.-+.|||||.+|+.+. .|+.
T Consensus 186 ~~qvl~~pgh~pVtsmqwn~dgt~l~tA-S~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt---~dav 261 (445)
T KOG2139|consen 186 HLQVLQDPGHNPVTSMQWNEDGTILVTA-SFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT---CDAV 261 (445)
T ss_pred chhheeCCCCceeeEEEEcCCCCEEeec-ccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEec---ccce
Confidence 011 11123689999999999999987 455779999999765 34445778899999999999999998 8999
Q ss_pred EEEEECCC-CeEEEeeeCC-CeeeEEEccCCCEEEEEEc
Q 020756 150 MAFWDYVD-GKQLGTTRAE-CSVTSEWSPDGRYFMTATT 186 (321)
Q Consensus 150 i~iwD~~~-~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s 186 (321)
..+|+... ..+..-.-.. .+...+|||+|++|+.+.+
T Consensus 262 frlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 262 FRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred eeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc
Confidence 99996543 3333322222 7788899999999998874
No 149
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.25 E-value=1e-10 Score=106.85 Aligned_cols=138 Identities=19% Similarity=0.355 Sum_probs=104.1
Q ss_pred CCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeCC-----Cc--ee---EEe--CCcCeeeEEEcCCCCeEEEEccCCCC
Q 020756 81 KEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKK-----CR--PI---LEL--GSGPYNTVRWNPKGKFLCLAGFGNLP 147 (321)
Q Consensus 81 ~~~~v~~~~wsP~g~-~l~~~~g~~~~~i~i~d~~-----~~--~~---~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~ 147 (321)
...+|+.+.|.+++. .|++ +..|..|+||-+. +. .+ ..+ |...+|.++|+|+|..|++++ .+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT--~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~---D~ 86 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLAT--AGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGG---DG 86 (434)
T ss_pred CCCceEEEEeccCcccceec--ccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecC---CC
Confidence 456899999999877 7777 4568899999651 11 11 122 788999999999999999999 89
Q ss_pred CcEEEEECC--------C--------CeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeEE
Q 020756 148 GDMAFWDYV--------D--------GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFK 208 (321)
Q Consensus 148 g~i~iwD~~--------~--------~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~ 208 (321)
|.|.+|-.. + .........| ++..++|+||+.++++++ +||.+++||+. |.++..
T Consensus 87 g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s------~dns~~l~Dv~~G~l~~~ 160 (434)
T KOG1009|consen 87 GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGS------VDNSVRLWDVHAGQLLAI 160 (434)
T ss_pred ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeee------ccceEEEEEeccceeEee
Confidence 999999765 2 1112223333 889999999999999999 79999999995 554432
Q ss_pred --eccCceEEEEEecCCCCCCCC
Q 020756 209 --KMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 209 --~~~~~~~~~~w~P~~~~~~~~ 229 (321)
.|...+..++|.|...++.+.
T Consensus 161 ~~dh~~yvqgvawDpl~qyv~s~ 183 (434)
T KOG1009|consen 161 LDDHEHYVQGVAWDPLNQYVASK 183 (434)
T ss_pred ccccccccceeecchhhhhhhhh
Confidence 355567789999987776654
No 150
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.25 E-value=1.4e-11 Score=110.53 Aligned_cols=185 Identities=11% Similarity=0.226 Sum_probs=132.0
Q ss_pred CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC-ceeeeecCC
Q 020756 3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPLRK 81 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-~~~~v~l~~ 81 (321)
.++.|+||++.+ ++++.+.--+-..+..+.+|. .++ +.++.| . ...+|.+..-.. .-..+.+.|
T Consensus 255 SDsTvrvWDv~t---ge~l~tlihHceaVLhlrf~n--g~m-vtcSkD-----r----siaVWdm~sps~it~rrVLvGH 319 (499)
T KOG0281|consen 255 SDSTVRVWDVNT---GEPLNTLIHHCEAVLHLRFSN--GYM-VTCSKD-----R----SIAVWDMASPTDITLRRVLVGH 319 (499)
T ss_pred CCceEEEEeccC---CchhhHHhhhcceeEEEEEeC--CEE-EEecCC-----c----eeEEEeccCchHHHHHHHHhhh
Confidence 468899999999 788766555555666777765 344 333322 1 222454443222 123455679
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 158 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~ 158 (321)
...|+.+.|+. ++++.+ ..|.+|++|+.. ++.+.++ |...+-|+.|. |+++++++ .|.+|++||...|
T Consensus 320 rAaVNvVdfd~--kyIVsA--SgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGS---SDntIRlwdi~~G 390 (499)
T KOG0281|consen 320 RAAVNVVDFDD--KYIVSA--SGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGS---SDNTIRLWDIECG 390 (499)
T ss_pred hhheeeecccc--ceEEEe--cCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecC---CCceEEEEecccc
Confidence 99999999974 477776 447899999994 5666666 67778888886 89999998 8899999999999
Q ss_pred eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce---------e---EEeccCceEEEEE
Q 020756 159 KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL---------F---FKKMFDKLFQAEW 219 (321)
Q Consensus 159 ~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~---------l---~~~~~~~~~~~~w 219 (321)
.++..+++| -+.++.| |.+.|+++. +|+.++|||+...+ + ...|.+.|..+.|
T Consensus 391 ~cLRvLeGHEeLvRciRF--d~krIVSGa------YDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF 457 (499)
T KOG0281|consen 391 ACLRVLEGHEELVRCIRF--DNKRIVSGA------YDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF 457 (499)
T ss_pred HHHHHHhchHHhhhheee--cCceeeecc------ccceEEEEecccccCCcccccchHHHhhhhccceeEEEee
Confidence 999999998 3455665 778899999 79999999995321 1 2345556666666
No 151
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.25 E-value=1.6e-09 Score=98.15 Aligned_cols=201 Identities=17% Similarity=0.276 Sum_probs=130.9
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK 81 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~ 81 (321)
|.+.-.++|+...+ .....+......++.|.||.. |++++.. +.. ..|..++.... .....+..
T Consensus 23 Gs~~Gyk~~~~~~~---~k~~~~~~~~~~IvEmLFSSS---LvaiV~~--~qp-------r~Lkv~~~Kk~-~~ICe~~f 86 (391)
T KOG2110|consen 23 GSKDGYKIFSCSPF---EKCFSKDTEGVSIVEMLFSSS---LVAIVSI--KQP-------RKLKVVHFKKK-TTICEIFF 86 (391)
T ss_pred cCCCceeEEecCch---HHhhcccCCCeEEEEeecccc---eeEEEec--CCC-------ceEEEEEcccC-ceEEEEec
Confidence 44445556666552 222222333445667777653 4444322 111 12455555443 33444445
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEeCC---cC--eeeEEEcCCCCeEEEEccCCCCCcEEEEEC
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILELGS---GP--YNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 155 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~~~---~~--~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~ 155 (321)
..+|.++..+-+ +|+|+ - ...|.|||++. +.++++.. .+ +..+..|+.+.+|+.-+.. ..|+|.|||+
T Consensus 87 pt~IL~VrmNr~--RLvV~--L-ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~-t~GdV~l~d~ 160 (391)
T KOG2110|consen 87 PTSILAVRMNRK--RLVVC--L-EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGST-TSGDVVLFDT 160 (391)
T ss_pred CCceEEEEEccc--eEEEE--E-cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCC-CCceEEEEEc
Confidence 567888888753 46654 1 23599999965 45566632 22 4445555566799996533 2589999999
Q ss_pred CCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEeccC----ceEEEEEecCCCCCCC
Q 020756 156 VDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMFD----KLFQAEWKPVSPDKFG 228 (321)
Q Consensus 156 ~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~~~~----~~~~~~w~P~~~~~~~ 228 (321)
.+.+.+..+.+| .+.+++||+||.+||||+. ...-|+++++ +|+++++...+ .+|+++|+|+.+.+..
T Consensus 161 ~nl~~v~~I~aH~~~lAalafs~~G~llATASe-----KGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~ 235 (391)
T KOG2110|consen 161 INLQPVNTINAHKGPLAALAFSPDGTLLATASE-----KGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAA 235 (391)
T ss_pred ccceeeeEEEecCCceeEEEECCCCCEEEEecc-----CceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEE
Confidence 999999999988 6888999999999999994 2334899998 68888766554 7999999999987775
Q ss_pred C
Q 020756 229 D 229 (321)
Q Consensus 229 ~ 229 (321)
.
T Consensus 236 s 236 (391)
T KOG2110|consen 236 S 236 (391)
T ss_pred e
Confidence 5
No 152
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.25 E-value=6e-11 Score=114.13 Aligned_cols=169 Identities=21% Similarity=0.317 Sum_probs=131.2
Q ss_pred ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 020756 30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT 109 (321)
Q Consensus 30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~ 109 (321)
.+.++.|-|||+-|++.+ ...|++.+.+.+..-+.--.|++.|++++||.||+.|+. |..|..+.
T Consensus 14 ci~d~afkPDGsqL~lAA-------------g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFAS--G~aDK~VI 78 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-------------GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFAS--GSADKSVI 78 (1081)
T ss_pred chheeEECCCCceEEEec-------------CCEEEEEeCCCcccccccccccceEEEEEEccCCceecc--CCCceeEE
Confidence 677899999999998864 234677777655332322358999999999999999998 78899999
Q ss_pred EEeCCCceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeC-CCeeeEEEccCCCEEEEEEcC
Q 020756 110 IFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTA 187 (321)
Q Consensus 110 i~d~~~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~-~~~~~~~wSpdG~~l~t~~s~ 187 (321)
+|+-+-+.+... |...+.++.|+|-...|++++ + .+.-+|..+.. .+..... ..+.+++|..||++|+.+-
T Consensus 79 ~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCs---L-sdFglWS~~qK-~V~K~kss~R~~~CsWtnDGqylalG~-- 151 (1081)
T KOG1538|consen 79 IWTSKLEGILKYSHNDAIQCMSFNPITHQLASCS---L-SDFGLWSPEQK-SVSKHKSSSRIICCSWTNDGQYLALGM-- 151 (1081)
T ss_pred EecccccceeeeccCCeeeEeecCchHHHhhhcc---h-hhccccChhhh-hHHhhhhheeEEEeeecCCCcEEEEec--
Confidence 999887777777 888999999999999999987 3 35668876543 2332322 2677899999999999999
Q ss_pred CceeecCcEEEEeecCceeEEe-----ccCceEEEEEecCCC
Q 020756 188 PRLQIDNGIKIFHHNGSLFFKK-----MFDKLFQAEWKPVSP 224 (321)
Q Consensus 188 ~rl~~d~~v~iw~~~g~~l~~~-----~~~~~~~~~w~P~~~ 224 (321)
.+++|.|-+-+|+.-... ..+.++.++|+|...
T Consensus 152 ----~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg 189 (1081)
T KOG1538|consen 152 ----FNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSG 189 (1081)
T ss_pred ----cCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCC
Confidence 499999998888754222 446899999999764
No 153
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.25 E-value=1.4e-09 Score=96.74 Aligned_cols=178 Identities=23% Similarity=0.256 Sum_probs=118.7
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCC--eeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGST--GLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL 79 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~--~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l 79 (321)
|.+-.|+||+++. +.++....-..+....+.|.+.-. .|+..+ .| |..-+|.+ +.-+..-.+
T Consensus 60 ssDetI~IYDm~k---~~qlg~ll~HagsitaL~F~~~~S~shLlS~s-dD---------G~i~iw~~---~~W~~~~sl 123 (362)
T KOG0294|consen 60 SSDETIHIYDMRK---RKQLGILLSHAGSITALKFYPPLSKSHLLSGS-DD---------GHIIIWRV---GSWELLKSL 123 (362)
T ss_pred CCCCcEEEEeccc---hhhhcceeccccceEEEEecCCcchhheeeec-CC---------CcEEEEEc---CCeEEeeee
Confidence 4566899999999 677777777777777888887654 554431 11 22222322 222222222
Q ss_pred -CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeC-CCcee--EEeCCcCeeeEEEcCCCCeEEEEcc------------
Q 020756 80 -RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPI--LELGSGPYNTVRWNPKGKFLCLAGF------------ 143 (321)
Q Consensus 80 -~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~--~~~~~~~~~~~~~sPdG~~l~~~g~------------ 143 (321)
.|.+.|++++.+|.|+.-+.+ +.|..+.+||+ ++..- ..+.+ ....+.|+|.|.++++.+.
T Consensus 124 K~H~~~Vt~lsiHPS~KLALsV--g~D~~lr~WNLV~Gr~a~v~~L~~-~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~ 200 (362)
T KOG0294|consen 124 KAHKGQVTDLSIHPSGKLALSV--GGDQVLRTWNLVRGRVAFVLNLKN-KATLVSWSPQGDHFVVSGRNKIDIYQLDNAS 200 (362)
T ss_pred cccccccceeEecCCCceEEEE--cCCceeeeehhhcCccceeeccCC-cceeeEEcCCCCEEEEEeccEEEEEecccHh
Confidence 378889999999999866666 33789999998 44433 33322 2223788888875555421
Q ss_pred ------------------------CCCCCcEEEEECCCCeEEEeeeCC--CeeeEE--EccCCCEEEEEEcCCceeecCc
Q 020756 144 ------------------------GNLPGDMAFWDYVDGKQLGTTRAE--CSVTSE--WSPDGRYFMTATTAPRLQIDNG 195 (321)
Q Consensus 144 ------------------------~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~--wSpdG~~l~t~~s~~rl~~d~~ 195 (321)
|..++.|.+||.++..+...+.+| .+-.+. =.|++.||+++++ |+.
T Consensus 201 v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSS------DG~ 274 (362)
T KOG0294|consen 201 VFREIENPKRILCATFLDGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASS------DGF 274 (362)
T ss_pred HhhhhhccccceeeeecCCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEecc------Cce
Confidence 014677888888888888888877 344444 3678999999997 999
Q ss_pred EEEEeecCc
Q 020756 196 IKIFHHNGS 204 (321)
Q Consensus 196 v~iw~~~g~ 204 (321)
|++||++-.
T Consensus 275 I~vWd~~~~ 283 (362)
T KOG0294|consen 275 IKVWDIDME 283 (362)
T ss_pred EEEEEcccc
Confidence 999999654
No 154
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.24 E-value=3.2e-11 Score=115.37 Aligned_cols=110 Identities=20% Similarity=0.419 Sum_probs=91.5
Q ss_pred CCCCeEEEEECc-CCCEEEEEEccCCCeEEEEeCCC----------ceeEEeCCcCeeeEEEcCCC-CeEEEEccCCCCC
Q 020756 81 KEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKC----------RPILELGSGPYNTVRWNPKG-KFLCLAGFGNLPG 148 (321)
Q Consensus 81 ~~~~v~~~~wsP-~g~~l~~~~g~~~~~i~i~d~~~----------~~~~~~~~~~~~~~~~sPdG-~~l~~~g~~n~~g 148 (321)
....|.|+.|.| |.+.|++. +.++.|.||.+.. +.+.+.|...+.+++|+|-. ..|++++ .|.
T Consensus 626 Ngt~vtDl~WdPFD~~rLAVa--~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~as---yd~ 700 (1012)
T KOG1445|consen 626 NGTLVTDLHWDPFDDERLAVA--TDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVAS---YDS 700 (1012)
T ss_pred cCceeeecccCCCChHHeeec--ccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhh---ccc
Confidence 456799999999 56688884 7789999998732 24456688899999999965 4666676 789
Q ss_pred cEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756 149 DMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 201 (321)
Q Consensus 149 ~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~ 201 (321)
+|++||+.+++....+.+| .|..++|||||+.+++.+ .|+.+++|+-
T Consensus 701 Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVc------KDg~~rVy~P 749 (1012)
T KOG1445|consen 701 TIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVC------KDGTLRVYEP 749 (1012)
T ss_pred eeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeee------cCceEEEeCC
Confidence 9999999999888888887 799999999999999999 4888888876
No 155
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.24 E-value=5.6e-11 Score=111.90 Aligned_cols=146 Identities=14% Similarity=0.243 Sum_probs=117.2
Q ss_pred EEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEcc
Q 020756 66 YLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGF 143 (321)
Q Consensus 66 ~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~ 143 (321)
+++..+.-+..+. .|.+.|.+-.|+|||.-|+++ .+||.|++|...+....++ ...++.|++|.|+.+.++++.
T Consensus 89 il~k~~rVE~sv~-AH~~A~~~gRW~~dGtgLlt~--GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~- 164 (737)
T KOG1524|consen 89 ILNKSARVERSIS-AHAAAISSGRWSPDGAGLLTA--GEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ- 164 (737)
T ss_pred Eecccchhhhhhh-hhhhhhhhcccCCCCceeeee--cCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec-
Confidence 3344444333333 478999999999999998886 6799999999887666555 467899999999999999983
Q ss_pred CCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe--ccCceEEEEE
Q 020756 144 GNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MFDKLFQAEW 219 (321)
Q Consensus 144 ~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~--~~~~~~~~~w 219 (321)
.+.++|=-+.-...+-...+| -+.+++|++....|++++ .|-.++|||-.|+.++.. |.-.+.+++|
T Consensus 165 ---g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgG------ED~kfKvWD~~G~~Lf~S~~~ey~ITSva~ 235 (737)
T KOG1524|consen 165 ---GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGG------EDFRFKIWDAQGANLFTSAAEEYAITSVAF 235 (737)
T ss_pred ---CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecC------CceeEEeecccCcccccCChhccceeeeee
Confidence 467888777777667677777 577899999999999999 599999999999999654 4457999999
Q ss_pred ecCCC
Q 020756 220 KPVSP 224 (321)
Q Consensus 220 ~P~~~ 224 (321)
.|+.-
T Consensus 236 npd~~ 240 (737)
T KOG1524|consen 236 NPEKD 240 (737)
T ss_pred ccccc
Confidence 99943
No 156
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.23 E-value=7.4e-10 Score=99.06 Aligned_cols=206 Identities=15% Similarity=0.232 Sum_probs=118.0
Q ss_pred CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEeccc------CCCceee-----cceeEEEEEcCC
Q 020756 3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVD------KTNQSYY-----GESKLNYLTTDG 71 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d------~t~~s~~-----g~~~l~~l~~~g 71 (321)
..+.|.+|++.+ ..-.+...-..++.....|||||+.|+..+.-+.. .+.+-|+ .....|.+..+|
T Consensus 69 k~~~vqvwsl~Q---pew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg 145 (447)
T KOG4497|consen 69 KDPKVQVWSLVQ---PEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDG 145 (447)
T ss_pred ccceEEEEEeec---ceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCC
Confidence 467899999988 55567777788899999999999998876321100 0000000 000112222222
Q ss_pred Cceeeeec------------------C----CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEeCCcCeeeE
Q 020756 72 THEGLVPL------------------R----KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTV 129 (321)
Q Consensus 72 ~~~~~v~l------------------~----~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~~~~~~~~ 129 (321)
..-...+. . ......++.|||||..|+|-....+.++..|.. .-.+..+
T Consensus 146 ~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~---------~lG~k~v 216 (447)
T KOG4497|consen 146 QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER---------GLGLKFV 216 (447)
T ss_pred ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeee---------ccceeEE
Confidence 22111110 0 012234455555555555543322333333321 2456788
Q ss_pred EEcCCCCeEEEEccCCCCCcEEEEECCCCeE-------------------------------------------------
Q 020756 130 RWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ------------------------------------------------- 160 (321)
Q Consensus 130 ~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~------------------------------------------------- 160 (321)
.|||.+++|++++ .|+.+++.+--+.+.
T Consensus 217 ~wsP~~qflavGs---yD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se 293 (447)
T KOG4497|consen 217 EWSPCNQFLAVGS---YDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESE 293 (447)
T ss_pred EeccccceEEeec---cchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccch
Confidence 8999999999887 666665544322110
Q ss_pred -----------EEeee------CC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE--eccCceEEEEE
Q 020756 161 -----------LGTTR------AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK--KMFDKLFQAEW 219 (321)
Q Consensus 161 -----------i~~~~------~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~--~~~~~~~~~~w 219 (321)
+..++ .+ .+.-++||+|..|++|-.+. .-|.+.|||+....++. .....+..+.|
T Consensus 294 ~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~----~PnalW~Wdlq~l~l~avLiQk~piraf~W 369 (447)
T KOG4497|consen 294 TIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDK----YPNALWLWDLQNLKLHAVLIQKHPIRAFEW 369 (447)
T ss_pred hhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCC----CCceEEEEechhhhhhhhhhhccceeEEEe
Confidence 00111 11 22337999999999998864 57889999997655532 23457889999
Q ss_pred ecCCCCCC
Q 020756 220 KPVSPDKF 227 (321)
Q Consensus 220 ~P~~~~~~ 227 (321)
.|..+.+.
T Consensus 370 dP~~prL~ 377 (447)
T KOG4497|consen 370 DPGRPRLV 377 (447)
T ss_pred CCCCceEE
Confidence 99888765
No 157
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=2.8e-10 Score=98.03 Aligned_cols=178 Identities=18% Similarity=0.253 Sum_probs=127.7
Q ss_pred CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEE-EEecccCCCceeecceeEEEEEcCC-CceeeeecC
Q 020756 3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV-AQSDVDKTNQSYYGESKLNYLTTDG-THEGLVPLR 80 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~-~~~d~d~t~~s~~g~~~l~~l~~~g-~~~~~v~l~ 80 (321)
.++.|-||...+.. =+.....+.+++.+..+.|-|.+-.+++. ++.| |...+..++.+| -....+..-
T Consensus 78 YDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSD---------G~vsvl~~~~~g~w~t~ki~~a 147 (299)
T KOG1332|consen 78 YDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD---------GKVSVLTYDSSGGWTTSKIVFA 147 (299)
T ss_pred cCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCC---------CcEEEEEEcCCCCccchhhhhc
Confidence 46789999998831 23455556677888899999987655543 3333 555566666653 334556667
Q ss_pred CCCCeEEEEECcC---C-----------CEEEEEEccCCCeEEEEeCCCc---eeEEe--CCcCeeeEEEcCCC----Ce
Q 020756 81 KEGPVHDVQWSYS---G-----------SEFAVVYGFMPASATIFNKKCR---PILEL--GSGPYNTVRWNPKG----KF 137 (321)
Q Consensus 81 ~~~~v~~~~wsP~---g-----------~~l~~~~g~~~~~i~i~d~~~~---~~~~~--~~~~~~~~~~sPdG----~~ 137 (321)
|+-.|+++.|.|- | +.|+. |.+|..++||+.... .-.+| |...+..++|.|.- .+
T Consensus 148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvS--gGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~ 225 (299)
T KOG1332|consen 148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVS--GGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKST 225 (299)
T ss_pred cccccceeeecCcCCCccccccCcccccceeec--cCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCcee
Confidence 8999999999996 5 34555 788999999988653 22224 78899999999974 47
Q ss_pred EEEEccCCCCCcEEEEECCCC------eEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756 138 LCLAGFGNLPGDMAFWDYVDG------KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 138 l~~~g~~n~~g~i~iwD~~~~------~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
|++++ .||+|.||-.+.. +.+..|. ..+..++||+.|..|+.+. .||.+.||.-+
T Consensus 226 iAS~S---qDg~viIwt~~~e~e~wk~tll~~f~-~~~w~vSWS~sGn~LaVs~------GdNkvtlwke~ 286 (299)
T KOG1332|consen 226 IASCS---QDGTVIIWTKDEEYEPWKKTLLEEFP-DVVWRVSWSLSGNILAVSG------GDNKVTLWKEN 286 (299)
T ss_pred eEEec---CCCcEEEEEecCccCcccccccccCC-cceEEEEEeccccEEEEec------CCcEEEEEEeC
Confidence 88888 9999999976521 1222221 1577899999999999998 49999999754
No 158
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.22 E-value=2.6e-10 Score=105.73 Aligned_cols=174 Identities=14% Similarity=0.189 Sum_probs=127.9
Q ss_pred ceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 020756 32 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF 111 (321)
Q Consensus 32 ~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~ 111 (321)
-.+.-|+++++|++. |.. ..|+++..... +-...+..++.|.++.|+.||+.|.++ +.++.|.+|
T Consensus 307 e~FeVShd~~fia~~--------G~~----G~I~lLhakT~-eli~s~KieG~v~~~~fsSdsk~l~~~--~~~GeV~v~ 371 (514)
T KOG2055|consen 307 ERFEVSHDSNFIAIA--------GNN----GHIHLLHAKTK-ELITSFKIEGVVSDFTFSSDSKELLAS--GGTGEVYVW 371 (514)
T ss_pred heeEecCCCCeEEEc--------ccC----ceEEeehhhhh-hhhheeeeccEEeeEEEecCCcEEEEE--cCCceEEEE
Confidence 355668999988774 222 23677766554 444455668999999999999999887 346799999
Q ss_pred eCCCc-eeEEe-CCcC--eeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC------eEEEeeeCC--CeeeEEEccCCC
Q 020756 112 NKKCR-PILEL-GSGP--YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG------KQLGTTRAE--CSVTSEWSPDGR 179 (321)
Q Consensus 112 d~~~~-~~~~~-~~~~--~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~------~~i~~~~~~--~~~~~~wSpdG~ 179 (321)
|++.. .++.| ..+. -.+++-|++|++|++++ ..|-|.|||.++. +.+..+..- .|+.+.|+||++
T Consensus 372 nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS---~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~q 448 (514)
T KOG2055|consen 372 NLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS---DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQ 448 (514)
T ss_pred ecCCcceEEEEeecCccceeeeeecCCCceEEecc---CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchh
Confidence 99655 44555 3343 35688889999999998 8899999997643 445554443 678899999999
Q ss_pred EEEEEEcCCceeecCcEEEEeecCceeEE------eccCceEEEEEecCCCCCC
Q 020756 180 YFMTATTAPRLQIDNGIKIFHHNGSLFFK------KMFDKLFQAEWKPVSPDKF 227 (321)
Q Consensus 180 ~l~t~~s~~rl~~d~~v~iw~~~g~~l~~------~~~~~~~~~~w~P~~~~~~ 227 (321)
.|+.++.. .++.++|-|+-.--++. .....+..+.|+|.+..+.
T Consensus 449 iLAiaS~~----~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lA 498 (514)
T KOG2055|consen 449 ILAIASRV----KKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLA 498 (514)
T ss_pred hhhhhhhc----cccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEE
Confidence 99988853 68999999985444432 2345789999999876655
No 159
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.22 E-value=2.8e-10 Score=101.30 Aligned_cols=184 Identities=15% Similarity=0.230 Sum_probs=129.4
Q ss_pred eeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec-CCCCCeEEEEECcCCCEEEEEE
Q 020756 23 RRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKEGPVHDVQWSYSGSEFAVVY 101 (321)
Q Consensus 23 ~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l-~~~~~v~~~~wsP~g~~l~~~~ 101 (321)
...++...+....||+|++.+++...+ .+..||-+.-.+--+...++ +|...|+.+.|+|.+..|+.+
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~----------~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtc- 73 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNN----------HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTC- 73 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCC----------ceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEc-
Confidence 444567788899999999999987432 23334544322211222222 478999999999999999997
Q ss_pred ccCCCeEEEEeC-CC---ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC------eEEEeeeCCCe
Q 020756 102 GFMPASATIFNK-KC---RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG------KQLGTTRAECS 169 (321)
Q Consensus 102 g~~~~~i~i~d~-~~---~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~------~~i~~~~~~~~ 169 (321)
..|...++|.. .+ ++...+ .+..+.++.|+|.++.+++++ ....|.||-++.. +.+...-...+
T Consensus 74 -s~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgS---gar~isVcy~E~ENdWWVsKhikkPirStv 149 (361)
T KOG1523|consen 74 -SHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGS---GARLISVCYYEQENDWWVSKHIKKPIRSTV 149 (361)
T ss_pred -cCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEecc---CccEEEEEEEecccceehhhhhCCccccce
Confidence 66888999987 33 344444 678889999999999999998 6667777766533 22333333478
Q ss_pred eeEEEccCCCEEEEEEcCCceeecCcEEEEee-----c--------------CceeEEe--ccCceEEEEEecCCCCCC
Q 020756 170 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-----N--------------GSLFFKK--MFDKLFQAEWKPVSPDKF 227 (321)
Q Consensus 170 ~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-----~--------------g~~l~~~--~~~~~~~~~w~P~~~~~~ 227 (321)
++++|+|++-+|+++++ |...+++.. + |+++.+. ..+.+..+.|+|.+..+.
T Consensus 150 ~sldWhpnnVLlaaGs~------D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~la 222 (361)
T KOG1523|consen 150 TSLDWHPNNVLLAAGST------DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLA 222 (361)
T ss_pred eeeeccCCcceeccccc------CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEee
Confidence 99999999999999996 999999874 1 2333222 334678888988876443
No 160
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.22 E-value=2.7e-10 Score=101.22 Aligned_cols=134 Identities=17% Similarity=0.289 Sum_probs=107.6
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCC--eEEEEccCCCCCcEEEEEC
Q 020756 81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGK--FLCLAGFGNLPGDMAFWDY 155 (321)
Q Consensus 81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~--~l~~~g~~n~~g~i~iwD~ 155 (321)
|.++|.+++.+ |.+++. |..|-+|.|||++.. ++..+ |.+.++++.|.|+-. .|+++. .||.|.+||.
T Consensus 42 H~~sitavAVs--~~~~aS--GssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~s---dDG~i~iw~~ 114 (362)
T KOG0294|consen 42 HAGSITALAVS--GPYVAS--GSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGS---DDGHIIIWRV 114 (362)
T ss_pred cccceeEEEec--ceeEec--cCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeec---CCCcEEEEEc
Confidence 78999999886 666655 788889999999543 44444 889999999999876 889988 8999999999
Q ss_pred CCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEeccC-ceEEEEEecCCCCCC
Q 020756 156 VDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMFD-KLFQAEWKPVSPDKF 227 (321)
Q Consensus 156 ~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~~~~-~~~~~~w~P~~~~~~ 227 (321)
...+++.++..| .++.++.+|.|++-++.+. |..+++|++ +|+.-+..... .-..+.|.|.+..++
T Consensus 115 ~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~------D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~ 184 (362)
T KOG0294|consen 115 GSWELLKSLKAHKGQVTDLSIHPSGKLALSVGG------DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFV 184 (362)
T ss_pred CCeEEeeeecccccccceeEecCCCceEEEEcC------CceeeeehhhcCccceeeccCCcceeeEEcCCCCEEE
Confidence 999999999987 7999999999998888774 999999998 66654443332 223389998887433
No 161
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.22 E-value=3.7e-10 Score=105.88 Aligned_cols=185 Identities=18% Similarity=0.353 Sum_probs=138.3
Q ss_pred ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEE-ccCC
Q 020756 27 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVY-GFMP 105 (321)
Q Consensus 27 f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~-g~~~ 105 (321)
-+..+.++.|+|+++.+.++.. |-...+-..++.+. .+....++.-+.+-|||.+++++++. +..-
T Consensus 273 ~~~pVhdf~W~p~S~~F~vi~g----------~~pa~~s~~~lr~N---l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~ 339 (561)
T COG5354 273 LKDPVHDFTWEPLSSRFAVISG----------YMPASVSVFDLRGN---LRFYFPEQKRNTIFFSPHERYILFAGFDNLQ 339 (561)
T ss_pred ccccceeeeecccCCceeEEec----------ccccceeecccccc---eEEecCCcccccccccCcccEEEEecCCccc
Confidence 3567889999999999988731 11112223333443 22222456667889999999998862 4445
Q ss_pred CeEEEEeCCCc--eeEEeCCcCeeeEEEcCCCCeEEEEccC---CCCCcEEEEECCCCeEEEeeeCCCeeeEEEccCCCE
Q 020756 106 ASATIFNKKCR--PILELGSGPYNTVRWNPKGKFLCLAGFG---NLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRY 180 (321)
Q Consensus 106 ~~i~i~d~~~~--~~~~~~~~~~~~~~~sPdG~~l~~~g~~---n~~g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~ 180 (321)
+.+.+||..++ .+..+......-+.|||||+|+.+...+ +.|..|.|||+. +..+- ..+.+.|.|.|++
T Consensus 340 gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~-g~~~f-----el~~~~W~p~~~~ 413 (561)
T COG5354 340 GNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY-GAKVF-----ELTNITWDPSGQY 413 (561)
T ss_pred cceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEec-Cchhh-----hhhhccccCCccc
Confidence 68999998665 3345655566678999999999886543 358899999983 32222 6678999999999
Q ss_pred EEEEEcCCceeecCcEEEEeecCceeEEeccCceEEEEEecCCCCCCCCc
Q 020756 181 FMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKFGDI 230 (321)
Q Consensus 181 l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~~~~~~~~w~P~~~~~~~~~ 230 (321)
..+.++.|+....++.++.++.|.++-.+..+....|+|+|.++.+++..
T Consensus 414 ~ttsSs~~~h~~~~~~~~~k~~Ga~~~e~~rg~~k~Fa~r~~~p~~lt~~ 463 (561)
T COG5354 414 VTTSSSCPKHKVEHGYKIFKIAGALYPEEARGGFKNFAWRPEPPSKLTIE 463 (561)
T ss_pred ceeeccCCCCccccccccccccccccChhhhcccceeEEecCCCccCChh
Confidence 99999999888899999999999999887888999999999999999863
No 162
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.21 E-value=3e-10 Score=104.01 Aligned_cols=125 Identities=14% Similarity=0.340 Sum_probs=99.6
Q ss_pred EEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEE-e------CCcCeeeEEEcCCCC
Q 020756 64 LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-L------GSGPYNTVRWNPKGK 136 (321)
Q Consensus 64 l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~-~------~~~~~~~~~~sPdG~ 136 (321)
|-.++..+. .....++-.+.|.++..+++|.++.++ ..|..+.++|+++..+.. + .....+.+.|||+|+
T Consensus 324 vRfwD~Rs~-~~~~sv~~gg~vtSl~ls~~g~~lLss--sRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~ 400 (459)
T KOG0288|consen 324 VRFWDIRSA-DKTRSVPLGGRVTSLDLSMDGLELLSS--SRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGS 400 (459)
T ss_pred eEEEeccCC-ceeeEeecCcceeeEeeccCCeEEeee--cCCCceeeeecccccEEEEeeccccccccccceeEECCCCc
Confidence 555664443 344444566899999999999999987 557799999998875543 3 234478899999999
Q ss_pred eEEEEccCCCCCcEEEEECCCCeEEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEe
Q 020756 137 FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 200 (321)
Q Consensus 137 ~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~ 200 (321)
|++.++ .+|.|+||++.++++...+... .+++++|+|.|.+|+++. .+..+.||.
T Consensus 401 YvaAGS---~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad------k~~~v~lW~ 459 (459)
T KOG0288|consen 401 YVAAGS---ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD------KQKAVTLWT 459 (459)
T ss_pred eeeecc---CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc------CCcceEecC
Confidence 999999 9999999999999877665542 589999999999999999 378888883
No 163
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=2e-10 Score=109.43 Aligned_cols=205 Identities=20% Similarity=0.256 Sum_probs=143.4
Q ss_pred CceEEEEEcCCcCCCC-ceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC-C
Q 020756 4 PASVQIYACGKDLQSQ-PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-K 81 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~-~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~-~ 81 (321)
++.|..|.-+.....+ -++..--..-...++.|+.+|+||++++.+ ..+++ +++-++... ..+.++. .
T Consensus 496 ~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~---~~~~~------VliHQLSK~-~sQ~PF~ks 565 (733)
T KOG0650|consen 496 DAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPD---SGNKS------VLIHQLSKR-KSQSPFRKS 565 (733)
T ss_pred cccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccC---CCcce------EEEEecccc-cccCchhhc
Confidence 4567788877421111 122222223467799999999999997532 12222 333233332 3445553 5
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeC-CCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 158 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~ 158 (321)
.+.|.++.|+|...+|+|+. -..+.|||+ ++..+..+ +...+..++.+|.|..|++++ .++.|..+|++-.
T Consensus 566 kG~vq~v~FHPs~p~lfVaT---q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs---~d~k~~WfDldls 639 (733)
T KOG0650|consen 566 KGLVQRVKFHPSKPYLFVAT---QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS---YDKKMCWFDLDLS 639 (733)
T ss_pred CCceeEEEecCCCceEEEEe---ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec---CCCeeEEEEcccC
Confidence 78999999999999999964 347999998 55555555 566789999999999999998 8899999999744
Q ss_pred -eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-------cCcee-----EEeccC----ceEEEEE
Q 020756 159 -KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-------NGSLF-----FKKMFD----KLFQAEW 219 (321)
Q Consensus 159 -~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-------~g~~l-----~~~~~~----~~~~~~w 219 (321)
+...++..| .+..++|++.--+|++++. |+.+.|++- ...++ ..+|.. .|.++.|
T Consensus 640 skPyk~lr~H~~avr~Va~H~ryPLfas~sd------Dgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~w 713 (733)
T KOG0650|consen 640 SKPYKTLRLHEKAVRSVAFHKRYPLFASGSD------DGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIW 713 (733)
T ss_pred cchhHHhhhhhhhhhhhhhccccceeeeecC------CCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecc
Confidence 555666666 6788999999999999984 799999873 11122 223333 4888999
Q ss_pred ecCCCCCCCCc
Q 020756 220 KPVSPDKFGDI 230 (321)
Q Consensus 220 ~P~~~~~~~~~ 230 (321)
+|..+++|++.
T Consensus 714 HP~qpWLfsAG 724 (733)
T KOG0650|consen 714 HPRQPWLFSAG 724 (733)
T ss_pred cCCCceEEecC
Confidence 99999999874
No 164
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=2.6e-10 Score=108.62 Aligned_cols=214 Identities=12% Similarity=0.139 Sum_probs=148.9
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEeccc------CCC---ceeeccee---------
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVD------KTN---QSYYGESK--------- 63 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d------~t~---~s~~g~~~--------- 63 (321)
+..|.||||.|.+ +.++.+..| ...+..+.|+|.++.-++.+..+.. .-| ..+.+...
T Consensus 419 sdDGtvriWEi~T---gRcvr~~~~-d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~ 494 (733)
T KOG0650|consen 419 SDDGTVRIWEIAT---GRCVRTVQF-DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESE 494 (733)
T ss_pred CCCCcEEEEEeec---ceEEEEEee-cceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccC
Confidence 4678999999999 889988775 5578899999998866555444321 001 00000000
Q ss_pred ----EEEEEcC----CCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC-CeEEEEeCCCc-eeEEe--CCcCeeeEEE
Q 020756 64 ----LNYLTTD----GTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP-ASATIFNKKCR-PILEL--GSGPYNTVRW 131 (321)
Q Consensus 64 ----l~~l~~~----g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~-~~i~i~d~~~~-~~~~~--~~~~~~~~~~ 131 (321)
+..|... +.....+.+.|..+|.++.|+..|++|+++.+... ..+.|+++... ...-| ..+.+.++.|
T Consensus 495 p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~F 574 (733)
T KOG0650|consen 495 PDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKF 574 (733)
T ss_pred CcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEe
Confidence 0111111 11112355668889999999999999999865433 47888888432 22233 5788999999
Q ss_pred cCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc--ee-
Q 020756 132 NPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS--LF- 206 (321)
Q Consensus 132 sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~--~l- 206 (321)
+|.-.+|+++. ...|.|||+..++.+..+... .+..++.+|.|..|+.++ .|+.+..+|++-. ..
T Consensus 575 HPs~p~lfVaT----q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs------~d~k~~WfDldlsskPyk 644 (733)
T KOG0650|consen 575 HPSKPYLFVAT----QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGS------YDKKMCWFDLDLSSKPYK 644 (733)
T ss_pred cCCCceEEEEe----ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEec------CCCeeEEEEcccCcchhH
Confidence 99999999985 468999999887666655443 788899999999999999 5999999998533 22
Q ss_pred -EEeccCceEEEEEecCCCCCCCC
Q 020756 207 -FKKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 207 -~~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
...|...+.+|++++.-+.+.+.
T Consensus 645 ~lr~H~~avr~Va~H~ryPLfas~ 668 (733)
T KOG0650|consen 645 TLRLHEKAVRSVAFHKRYPLFASG 668 (733)
T ss_pred Hhhhhhhhhhhhhhccccceeeee
Confidence 44567788888888877655544
No 165
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.18 E-value=2.1e-09 Score=100.20 Aligned_cols=155 Identities=15% Similarity=0.224 Sum_probs=120.2
Q ss_pred EEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC-eEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEE
Q 020756 64 LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCL 140 (321)
Q Consensus 64 l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~-~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~ 140 (321)
.+++...++ ..+++.+.+.|.-..+.-+++-+++ |..++ .+-|||.++..+..+ +-+.+..+..+|+|+++++
T Consensus 343 aFi~~~~~~--~~iqv~~~~~VrY~r~~~~~e~~vi--gt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vv 418 (668)
T COG4946 343 AFIMRPWDG--YSIQVGKKGGVRYRRIQVDPEGDVI--GTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVV 418 (668)
T ss_pred EEEECCCCC--eeEEcCCCCceEEEEEccCCcceEE--eccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEE
Confidence 466666665 4567788899999999988886665 56677 899999999887777 5688999999999999999
Q ss_pred EccCCCCCcEEEEECCCCe--EEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEeccC--ceEE
Q 020756 141 AGFGNLPGDMAFWDYVDGK--QLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFD--KLFQ 216 (321)
Q Consensus 141 ~g~~n~~g~i~iwD~~~~~--~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~~--~~~~ 216 (321)
+. ...+|.++|++++. .+-..+..-++.+.|||++++||.+- |.--+...|+|+|..|..++..... .-++
T Consensus 419 aN---dr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYaf--P~gy~tq~Iklydm~~~Kiy~vTT~ta~Dfs 493 (668)
T COG4946 419 AN---DRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAF--PEGYYTQSIKLYDMDGGKIYDVTTPTAYDFS 493 (668)
T ss_pred Ec---CceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEec--CcceeeeeEEEEecCCCeEEEecCCcccccC
Confidence 96 78899999999984 34444444799999999999999876 3333678899999998777554443 3344
Q ss_pred EEEecCCCCCC
Q 020756 217 AEWKPVSPDKF 227 (321)
Q Consensus 217 ~~w~P~~~~~~ 227 (321)
-+|.|+..++|
T Consensus 494 PaFD~d~ryLY 504 (668)
T COG4946 494 PAFDPDGRYLY 504 (668)
T ss_pred cccCCCCcEEE
Confidence 56777776655
No 166
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.17 E-value=1.8e-09 Score=95.10 Aligned_cols=201 Identities=16% Similarity=0.257 Sum_probs=135.1
Q ss_pred ceEEEEEcCCcCC-CCce-----eeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcC-CCceeee
Q 020756 5 ASVQIYACGKDLQ-SQPL-----ARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD-GTHEGLV 77 (321)
Q Consensus 5 ~~v~v~~~~~~~~-~~~i-----~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~-g~~~~~v 77 (321)
-.+|||.+..... -.+. ...+-|.+....|.||.-...++..++.| . +=.+|.+... ...-+..
T Consensus 121 D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiD--T-------TCTiWdie~~~~~~vkTQ 191 (364)
T KOG0290|consen 121 DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSID--T-------TCTIWDIETGVSGTVKTQ 191 (364)
T ss_pred CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeeccc--C-------eEEEEEEeeccccceeeE
Confidence 3689999984210 1111 12334567788999998888887765543 1 1124555442 1112333
Q ss_pred ecCCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeCCCceeEEe------CCcCeeeEEEcCCC-CeEEEEccCCCCCc
Q 020756 78 PLRKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKCRPILEL------GSGPYNTVRWNPKG-KFLCLAGFGNLPGD 149 (321)
Q Consensus 78 ~l~~~~~v~~~~wsP~g~-~l~~~~g~~~~~i~i~d~~~~~~~~~------~~~~~~~~~~sPdG-~~l~~~g~~n~~g~ 149 (321)
-+.|...|+|++|...|. .||.+ ..||.+++||++...-.++ ...+.-.++|+++. +++++-.. ....
T Consensus 192 LIAHDKEV~DIaf~~~s~~~FASv--gaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~--dS~~ 267 (364)
T KOG0290|consen 192 LIAHDKEVYDIAFLKGSRDVFASV--GADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAM--DSNK 267 (364)
T ss_pred EEecCcceeEEEeccCccceEEEe--cCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhc--CCce
Confidence 356899999999999776 45555 4589999999976533333 14567789999854 56766541 2368
Q ss_pred EEEEECCC-CeEEEeeeCC--CeeeEEEccC-CCEEEEEEcCCceeecCcEEEEeecCc---------eeEEeccCceEE
Q 020756 150 MAFWDYVD-GKQLGTTRAE--CSVTSEWSPD-GRYFMTATTAPRLQIDNGIKIFHHNGS---------LFFKKMFDKLFQ 216 (321)
Q Consensus 150 i~iwD~~~-~~~i~~~~~~--~~~~~~wSpd-G~~l~t~~s~~rl~~d~~v~iw~~~g~---------~l~~~~~~~~~~ 216 (321)
|.|.|++. ...+..+..| .+..++|.|. ..+|.+++. |....|||+..- +.|. ...+|.+
T Consensus 268 V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD------D~qaliWDl~q~~~~~~~dPilay~-a~~EVNq 340 (364)
T KOG0290|consen 268 VVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD------DCQALIWDLQQMPRENGEDPILAYT-AGGEVNQ 340 (364)
T ss_pred EEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC------cceEEEEecccccccCCCCchhhhh-ccceeee
Confidence 99999874 4677778777 7888999996 778888884 889999999421 1133 4569999
Q ss_pred EEEecCCCC
Q 020756 217 AEWKPVSPD 225 (321)
Q Consensus 217 ~~w~P~~~~ 225 (321)
++|+|..+.
T Consensus 341 i~Ws~~~~D 349 (364)
T KOG0290|consen 341 IQWSSSQPD 349 (364)
T ss_pred eeecccCCC
Confidence 999986553
No 167
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=99.16 E-value=1.9e-09 Score=103.21 Aligned_cols=198 Identities=14% Similarity=0.247 Sum_probs=129.6
Q ss_pred ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756 5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP 84 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~ 84 (321)
.++.++++.. ++.-...+ |........|+|||++|++....+ |...||+++..+....++. .-.+.
T Consensus 218 ~~i~~~~l~~---g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rd---------g~~~iy~~dl~~~~~~~Lt-~~~gi 283 (425)
T COG0823 218 PRIYYLDLNT---GKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRD---------GSPDIYLMDLDGKNLPRLT-NGFGI 283 (425)
T ss_pred ceEEEEeccC---Cccceeec-cCCccCCccCCCCCCEEEEEECCC---------CCccEEEEcCCCCcceecc-cCCcc
Confidence 5677788877 33333333 566777889999999999975432 6667999999887644432 23444
Q ss_pred eEEEEECcCCCEEEEEEccCCC-eEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCC--cEEEEECCCCe
Q 020756 85 VHDVQWSYSGSEFAVVYGFMPA-SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPG--DMAFWDYVDGK 159 (321)
Q Consensus 85 v~~~~wsP~g~~l~~~~g~~~~-~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g--~i~iwD~~~~~ 159 (321)
-..-.|+|||+.++++...... .|.++|..+.....+ .........|||||++|++.+.. +| .|.+.|+.++.
T Consensus 284 ~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~--~g~~~i~~~~~~~~~ 361 (425)
T COG0823 284 NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSS--GGQWDIDKNDLASGG 361 (425)
T ss_pred ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEecc--CCceeeEEeccCCCC
Confidence 4578999999999998533222 677778877755444 44444489999999999998721 34 47778887765
Q ss_pred EEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe--ccCceEEEEEec
Q 020756 160 QLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MFDKLFQAEWKP 221 (321)
Q Consensus 160 ~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~--~~~~~~~~~w~P 221 (321)
.+..+... .....+|+|+|+.|+..+... .+..+..-+.+|+..... ....+....|.|
T Consensus 362 ~~~~lt~~~~~e~ps~~~ng~~i~~~s~~~---~~~~l~~~s~~g~~~~~~~~~~~~~~~p~w~~ 423 (425)
T COG0823 362 KIRILTSTYLNESPSWAPNGRMIMFSSGQG---GGSVLSLVSLDGRVSRPLPLADGDVRVPAWSP 423 (425)
T ss_pred cEEEccccccCCCCCcCCCCceEEEeccCC---CCceEEEeeccceeEEEEeccCcceecccccC
Confidence 44444443 334579999999999988643 122333333455544322 223555666655
No 168
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.16 E-value=1.2e-09 Score=96.07 Aligned_cols=209 Identities=12% Similarity=0.221 Sum_probs=138.9
Q ss_pred ceEEEEEcCCcCCCCceeeeeccc--CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce------ee
Q 020756 5 ASVQIYACGKDLQSQPLARRSFFR--CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE------GL 76 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~~~~f~--~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~------~~ 76 (321)
..|-+-.+... +..+-.+.||. .++..+.=+|-.+.|+..+-.+....+..+ ...||.|.-.-+.. ..
T Consensus 40 NqVhll~~d~e--~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~--~aaiw~ipe~~~~S~~~tlE~v 115 (370)
T KOG1007|consen 40 NQVHLLRLDSE--GSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLT--GAAIWQIPEPLGQSNSSTLECV 115 (370)
T ss_pred ceeEEEEecCc--cchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCccee--eEEEEecccccCccccchhhHh
Confidence 34555555542 45566666663 455677778888888887654433333322 22355554332221 11
Q ss_pred eecC--CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-e-eEEe-------CCcCeeeEEEcC--CCCeEEEEcc
Q 020756 77 VPLR--KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-P-ILEL-------GSGPYNTVRWNP--KGKFLCLAGF 143 (321)
Q Consensus 77 v~l~--~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~-~~~~-------~~~~~~~~~~sP--dG~~l~~~g~ 143 (321)
..|+ +-+.|.++.|.|++..++... +..|.+|++... . +..+ +.....+-.||| ||+.+++.+
T Consensus 116 ~~Ldteavg~i~cvew~Pns~klasm~---dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~- 191 (370)
T KOG1007|consen 116 ASLDTEAVGKINCVEWEPNSDKLASMD---DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS- 191 (370)
T ss_pred hcCCHHHhCceeeEEEcCCCCeeEEec---cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-
Confidence 1223 457899999999999998853 568999998432 1 2222 244566779999 688888874
Q ss_pred CCCCCcEEEEECCCCeEEEeeeC-C--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC--cee--EEeccCceEE
Q 020756 144 GNLPGDMAFWDYVDGKQLGTTRA-E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG--SLF--FKKMFDKLFQ 216 (321)
Q Consensus 144 ~n~~g~i~iwD~~~~~~i~~~~~-~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g--~~l--~~~~~~~~~~ 216 (321)
++++.+||+++.++...++. | .+..+.|.|+-++++.... .|+.++|||... ..+ ...|...+|.
T Consensus 192 ---d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~g-----DdgyvriWD~R~tk~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 192 ---DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCG-----DDGYVRIWDTRKTKFPVQELPGHSHWVWA 263 (370)
T ss_pred ---CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcC-----CCccEEEEeccCCCccccccCCCceEEEE
Confidence 68999999999877766654 3 6888999999776655443 388999999843 333 4456678999
Q ss_pred EEEecCCCCCCCC
Q 020756 217 AEWKPVSPDKFGD 229 (321)
Q Consensus 217 ~~w~P~~~~~~~~ 229 (321)
+.++|....++-.
T Consensus 264 VRfn~~hdqLiLs 276 (370)
T KOG1007|consen 264 VRFNPEHDQLILS 276 (370)
T ss_pred EEecCccceEEEe
Confidence 9999987766643
No 169
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=1.4e-09 Score=92.83 Aligned_cols=139 Identities=14% Similarity=0.236 Sum_probs=98.6
Q ss_pred CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeC--CCc------eeEEeCCcCeeeEEEc-------------------
Q 020756 80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK--KCR------PILELGSGPYNTVRWN------------------- 132 (321)
Q Consensus 80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~--~~~------~~~~~~~~~~~~~~~s------------------- 132 (321)
.|.+.|++.+|||+|+.|++ |..|..|++.-. ++. .-+..|.+.+..++|-
T Consensus 87 hhkgsiyc~~ws~~geliat--gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCGELIAT--GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred ccCccEEEEEecCccCeEEe--cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 47999999999999999988 677877766422 111 1122244444444333
Q ss_pred ---------------------------CCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeC---------CCeeeEEEcc
Q 020756 133 ---------------------------PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA---------ECSVTSEWSP 176 (321)
Q Consensus 133 ---------------------------PdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~---------~~~~~~~wSp 176 (321)
-+|-.+++++ .|.+|+|||++-..++.++.. ..+..++..|
T Consensus 165 iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgs---qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp 241 (350)
T KOG0641|consen 165 IYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGS---QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP 241 (350)
T ss_pred EEEeecCCCCcceeecCCcccEEEEEEecCcEEEccC---CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC
Confidence 2234444444 788999999987777766442 2567799999
Q ss_pred CCCEEEEEEcCCceeecCcEEEEeecCcee---EEeccCceEEEEEecCCCCCCCC
Q 020756 177 DGRYFMTATTAPRLQIDNGIKIFHHNGSLF---FKKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 177 dG~~l~t~~s~~rl~~d~~v~iw~~~g~~l---~~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
.|++|+++- .|....+||+.|..+ +..|..++..+.|+|..-++++-
T Consensus 242 sgrll~sg~------~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~ 291 (350)
T KOG0641|consen 242 SGRLLASGH------ADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTC 291 (350)
T ss_pred Ccceeeecc------CCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEe
Confidence 999999998 599999999988765 44466799999999987776643
No 170
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.15 E-value=3.5e-10 Score=108.39 Aligned_cols=199 Identities=16% Similarity=0.219 Sum_probs=131.1
Q ss_pred CCceEEEEEcCCcCCCC-ceeeeec---ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce--ee
Q 020756 3 SPASVQIYACGKDLQSQ-PLARRSF---FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE--GL 76 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~-~i~~~~~---f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~--~~ 76 (321)
.+|.|.||+..... .+ +-++..+ +..-+.++.|-| |+..++.++ |.+.+..|++.+..- ..
T Consensus 72 E~G~i~l~dt~~~~-fr~ee~~lk~~~aH~nAifDl~wap-ge~~lVsas-----------GDsT~r~Wdvk~s~l~G~~ 138 (720)
T KOG0321|consen 72 EDGGIILFDTKSIV-FRLEERQLKKPLAHKNAIFDLKWAP-GESLLVSAS-----------GDSTIRPWDVKTSRLVGGR 138 (720)
T ss_pred CCCceeeecchhhh-cchhhhhhcccccccceeEeeccCC-CceeEEEcc-----------CCceeeeeeeccceeecce
Confidence 57899999988732 12 2222232 345678999999 888888643 566667777655432 33
Q ss_pred eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEE----------eC--------------------CcCe
Q 020756 77 VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE----------LG--------------------SGPY 126 (321)
Q Consensus 77 v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~----------~~--------------------~~~~ 126 (321)
+.+.|.+.|.+++|.|+...+++ .|..|+.+.|||++++.+.. -| ...+
T Consensus 139 ~~~GH~~SvkS~cf~~~n~~vF~-tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti 217 (720)
T KOG0321|consen 139 LNLGHTGSVKSECFMPTNPAVFC-TGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTI 217 (720)
T ss_pred eecccccccchhhhccCCCccee-eccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCce
Confidence 57789999999999998764433 38899999999986543110 01 1122
Q ss_pred e---eEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEee--------eCC-----Ceee-------------------
Q 020756 127 N---TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT--------RAE-----CSVT------------------- 171 (321)
Q Consensus 127 ~---~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~--------~~~-----~~~~------------------- 171 (321)
. ++.+.-|...|+++|- .|+.|+|||++........ ..+ .+++
T Consensus 218 ~ssvTvv~fkDe~tlaSaga--~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sI 295 (720)
T KOG0321|consen 218 FSSVTVVLFKDESTLASAGA--ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSI 295 (720)
T ss_pred eeeeEEEEEeccceeeeccC--CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcE
Confidence 2 3677889999999982 4899999999864211100 000 1111
Q ss_pred ---------------------------EEEccCCCEEEEEEcCCceeecCcEEEEeecCc----eeEEeccCceEEEEEe
Q 020756 172 ---------------------------SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS----LFFKKMFDKLFQAEWK 220 (321)
Q Consensus 172 ---------------------------~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~----~l~~~~~~~~~~~~w~ 220 (321)
-.-||||.+|+++++ |...+||.++.- .++.+|..+|..+.|.
T Consensus 296 y~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSs------d~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~ 369 (720)
T KOG0321|consen 296 YFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSS------DEQAYIWVVSSPEAPPALLLGHTREVTTVRWL 369 (720)
T ss_pred EEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCC------CcceeeeeecCccCChhhhhCcceEEEEEeec
Confidence 145777777777775 777777777432 2366778899999999
Q ss_pred cCC
Q 020756 221 PVS 223 (321)
Q Consensus 221 P~~ 223 (321)
|.+
T Consensus 370 pS~ 372 (720)
T KOG0321|consen 370 PSA 372 (720)
T ss_pred ccc
Confidence 855
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.14 E-value=1.2e-09 Score=97.55 Aligned_cols=178 Identities=16% Similarity=0.240 Sum_probs=120.6
Q ss_pred cceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee-eecCC-----CCCeEEEEECcCCC-EEEEEEcc
Q 020756 31 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL-VPLRK-----EGPVHDVQWSYSGS-EFAVVYGF 103 (321)
Q Consensus 31 ~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~-v~l~~-----~~~v~~~~wsP~g~-~l~~~~g~ 103 (321)
...+.|||||..|+.--. ....++.+..-|..... -++.+ .+-|.++++||... .+++ |.
T Consensus 161 AhsL~Fs~DGeqlfaGyk-----------rcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~--gs 227 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFAGYK-----------RCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAV--GS 227 (406)
T ss_pred heeEEecCCCCeEeeccc-----------ceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceee--ec
Confidence 347899999999987411 22234444333332211 22223 67889999999655 5555 33
Q ss_pred CCCeEEEEeC-CCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC-eEEEeeeCC-C-e---eeEEE
Q 020756 104 MPASATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE-C-S---VTSEW 174 (321)
Q Consensus 104 ~~~~i~i~d~-~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~-~~i~~~~~~-~-~---~~~~w 174 (321)
-...+-||.- ...+++.+ |.+.|..+.|.+||+.|.++.- .+-.|..||++.- ..+..+..| . . ..+..
T Consensus 228 Y~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR--k~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDl 305 (406)
T KOG2919|consen 228 YGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR--KDDKILCWDIRYSRDPVYALERHVGDTNQRILFDL 305 (406)
T ss_pred ccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc--CCCeEEEEeehhccchhhhhhhhccCccceEEEec
Confidence 2346667654 34566666 6889999999999999988872 4678999999854 556666555 1 2 23677
Q ss_pred ccCCCEEEEEEcCCceeecCcEEEEeecC--ce--eEEeccCceEEEEEecCCCCCCCC
Q 020756 175 SPDGRYFMTATTAPRLQIDNGIKIFHHNG--SL--FFKKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 175 SpdG~~l~t~~s~~rl~~d~~v~iw~~~g--~~--l~~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
.|+|++|+++.+ |+.|++||+.+ .. ++..+.+-+..|+.+|.-|.+.+.
T Consensus 306 d~~~~~LasG~t------dG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilats 358 (406)
T KOG2919|consen 306 DPKGEILASGDT------DGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATS 358 (406)
T ss_pred CCCCceeeccCC------CccEEEEecCCCCCcccccccccccccceecCcccceeeec
Confidence 899999999985 99999999964 32 244455677889999986665554
No 172
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.13 E-value=6e-09 Score=95.17 Aligned_cols=184 Identities=14% Similarity=0.222 Sum_probs=135.4
Q ss_pred CCCceEEEEEcCCcC----CCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee
Q 020756 2 GSPASVQIYACGKDL----QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 77 (321)
Q Consensus 2 g~p~~v~v~~~~~~~----~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v 77 (321)
+.+..|.||+||... ...++..+..+...+-.+.|+|.-..+|+.+. +...+.++++.. .+..+
T Consensus 101 SeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag-----------~Dn~v~iWnv~t-geali 168 (472)
T KOG0303|consen 101 SEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG-----------SDNTVSIWNVGT-GEALI 168 (472)
T ss_pred CCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc-----------CCceEEEEeccC-Cceee
Confidence 356889999999722 23566777777777778999999888887642 222344555544 47889
Q ss_pred ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCe-eeEEEcCCCCeEEEEccCC-CCCcEEE
Q 020756 78 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPY-NTVRWNPKGKFLCLAGFGN-LPGDMAF 152 (321)
Q Consensus 78 ~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~-~~~~~sPdG~~l~~~g~~n-~~g~i~i 152 (321)
.++|.+.|+++.|+-||.+|++. +.|.+|+|||.+.. .+..- |.+.. ..+.|--+|. |+++||.- .+.++-+
T Consensus 169 ~l~hpd~i~S~sfn~dGs~l~Tt--ckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aL 245 (472)
T KOG0303|consen 169 TLDHPDMVYSMSFNRDGSLLCTT--CKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIAL 245 (472)
T ss_pred ecCCCCeEEEEEeccCCceeeee--cccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceec
Confidence 99999999999999999999995 77999999998654 44444 44433 3466888888 88888754 3679999
Q ss_pred EECCCCe-E--EEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce
Q 020756 153 WDYVDGK-Q--LGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 205 (321)
Q Consensus 153 wD~~~~~-~--i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~ 205 (321)
||.++.+ . +..+... .+.-.-|.+|...|..++- .|+.|+.|.++.+.
T Consensus 246 wdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GK-----GD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 246 WDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGK-----GDSSIRYFEITNEP 297 (472)
T ss_pred cCcccccCcceeEEeccCCceEEeeecCCCCEEEEEec-----CCcceEEEEecCCC
Confidence 9987763 2 2333333 6666789999998888875 69999999996654
No 173
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.13 E-value=1.6e-08 Score=90.16 Aligned_cols=175 Identities=17% Similarity=0.224 Sum_probs=120.3
Q ss_pred CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC
Q 020756 3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE 82 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~ 82 (321)
.|..|.||+=-. ..++...+| ..++..+...++ .|+++. +..+|.+...........++..
T Consensus 73 ~pNkviIWDD~k---~~~i~el~f-~~~I~~V~l~r~--riVvvl-------------~~~I~VytF~~n~k~l~~~et~ 133 (346)
T KOG2111|consen 73 PPNKVIIWDDLK---ERCIIELSF-NSEIKAVKLRRD--RIVVVL-------------ENKIYVYTFPDNPKLLHVIETR 133 (346)
T ss_pred CCceEEEEeccc---CcEEEEEEe-ccceeeEEEcCC--eEEEEe-------------cCeEEEEEcCCChhheeeeecc
Confidence 377899999433 677777775 457778887774 444432 2223443333222222222221
Q ss_pred -CCeEEEEECcCC-CEEEEEEccCCCeEEEEeCCCcee---E--EeCCcCeeeEEEcCCCCeEEEEccCCCCCc-EEEEE
Q 020756 83 -GPVHDVQWSYSG-SEFAVVYGFMPASATIFNKKCRPI---L--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGD-MAFWD 154 (321)
Q Consensus 83 -~~v~~~~wsP~g-~~l~~~~g~~~~~i~i~d~~~~~~---~--~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~-i~iwD 154 (321)
.|---++..|.. ..++++-|...|.+.|-|+..... . .-|...+.+++.+-+|..||+++ ..|+ |+|||
T Consensus 134 ~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaS---tkGTLIRIFd 210 (346)
T KOG2111|consen 134 SNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAS---TKGTLIRIFD 210 (346)
T ss_pred cCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEec---cCcEEEEEEE
Confidence 122245555643 344444477788999999843322 2 33999999999999999999998 6564 78999
Q ss_pred CCCCeEEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce
Q 020756 155 YVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 205 (321)
Q Consensus 155 ~~~~~~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~ 205 (321)
..+|+++..+... .+.+++||||+.+|++++. .++++|+.+....
T Consensus 211 t~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSd------KgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 211 TEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSD------KGTLHIFSLRDTE 259 (346)
T ss_pred cCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcC------CCeEEEEEeecCC
Confidence 9999999988764 7889999999999999994 7889999985543
No 174
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.12 E-value=3e-09 Score=94.29 Aligned_cols=149 Identities=12% Similarity=0.195 Sum_probs=116.7
Q ss_pred cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 020756 28 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS 107 (321)
Q Consensus 28 ~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~ 107 (321)
+..+..+.|+|.++.||+. +|.|+-.||.+..+ +-.+.+.|+.|+.+++|.++.+ +++ |+.|+.
T Consensus 13 ~d~IS~v~f~~~~~~LLvs----------sWDgslrlYdv~~~---~l~~~~~~~~plL~c~F~d~~~-~~~--G~~dg~ 76 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVS----------SWDGSLRLYDVPAN---SLKLKFKHGAPLLDCAFADEST-IVT--GGLDGQ 76 (323)
T ss_pred hhceeeEEEcCcCCcEEEE----------eccCcEEEEeccch---hhhhheecCCceeeeeccCCce-EEE--eccCce
Confidence 3456788999999999885 35577677766554 4556667999999999998553 333 688999
Q ss_pred EEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCCCeeeEEEccCCCEEEEEE
Q 020756 108 ATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTAT 185 (321)
Q Consensus 108 i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~t~~ 185 (321)
|+++|+.+.....+ |..++.++.+++--..++++| .|+.|++||.++...+..+.... -..+-+-.|..|+.++
T Consensus 77 vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgs---WD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v~g~~LvVg~ 152 (323)
T KOG1036|consen 77 VRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGS---WDKTIKFWDPRNKVVVGTFDQGK-KVYCMDVSGNRLVVGT 152 (323)
T ss_pred EEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcc---cCccEEEEeccccccccccccCc-eEEEEeccCCEEEEee
Confidence 99999987766666 788999999999999999999 99999999998766666665543 2234555688888888
Q ss_pred cCCceeecCcEEEEeec
Q 020756 186 TAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 186 s~~rl~~d~~v~iw~~~ 202 (321)
. |..+.+||+.
T Consensus 153 ~------~r~v~iyDLR 163 (323)
T KOG1036|consen 153 S------DRKVLIYDLR 163 (323)
T ss_pred c------CceEEEEEcc
Confidence 4 9999999984
No 175
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=1.5e-09 Score=98.20 Aligned_cols=135 Identities=27% Similarity=0.491 Sum_probs=97.8
Q ss_pred CCCeEEEEECcCC-CEEEEEEccCCCeEEEEeCCC-----ce----------eEEe-CCcCeeeEEEcCCCCeEEEEccC
Q 020756 82 EGPVHDVQWSYSG-SEFAVVYGFMPASATIFNKKC-----RP----------ILEL-GSGPYNTVRWNPKGKFLCLAGFG 144 (321)
Q Consensus 82 ~~~v~~~~wsP~g-~~l~~~~g~~~~~i~i~d~~~-----~~----------~~~~-~~~~~~~~~~sPdG~~l~~~g~~ 144 (321)
...|.+++|-|.+ +.|++ |+. +-|.||.... .. +... ++.+|.++.|++||..+++++++
T Consensus 140 QrnvtclawRPlsaselav--gCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~g 216 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAV--GCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFG 216 (445)
T ss_pred hcceeEEEeccCCcceeee--eec-ceeEEEEcCcccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccC
Confidence 4578999999965 46776 343 4689996521 11 1111 56789999999999999999976
Q ss_pred CCCCcEEEEECCCCeEEEee-eC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee---EEeccCceEEEEE
Q 020756 145 NLPGDMAFWDYVDGKQLGTT-RA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF---FKKMFDKLFQAEW 219 (321)
Q Consensus 145 n~~g~i~iwD~~~~~~i~~~-~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l---~~~~~~~~~~~~w 219 (321)
+ ..|.|||.+++.++-.. .+ ..++-+.|||||.+|..++ .|..+++|..+..-- .......|....|
T Consensus 217 s--ssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt------~davfrlw~e~q~wt~erw~lgsgrvqtacW 288 (445)
T KOG2139|consen 217 S--SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAAT------CDAVFRLWQENQSWTKERWILGSGRVQTACW 288 (445)
T ss_pred c--ceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEec------ccceeeeehhcccceecceeccCCceeeeee
Confidence 5 88999999998765544 22 3778899999999999999 499999996532111 1122337778888
Q ss_pred ecCCCCCC
Q 020756 220 KPVSPDKF 227 (321)
Q Consensus 220 ~P~~~~~~ 227 (321)
+|.+..++
T Consensus 289 spcGsfLL 296 (445)
T KOG2139|consen 289 SPCGSFLL 296 (445)
T ss_pred cCCCCEEE
Confidence 88887655
No 176
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.11 E-value=3.9e-10 Score=101.38 Aligned_cols=182 Identities=11% Similarity=0.156 Sum_probs=127.8
Q ss_pred CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC
Q 020756 4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG 83 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~ 83 (321)
+..|+||+... -.++....-+.+.+.-+.+.. + +++..+ ...++-.++.+.+..-.+-+.|.+
T Consensus 216 DnTikiWD~n~---~~c~~~L~GHtGSVLCLqyd~--r-viisGS-----------SDsTvrvWDv~tge~l~tlihHce 278 (499)
T KOG0281|consen 216 DNTIKIWDKNS---LECLKILTGHTGSVLCLQYDE--R-VIVSGS-----------SDSTVRVWDVNTGEPLNTLIHHCE 278 (499)
T ss_pred cCceEEecccc---HHHHHhhhcCCCcEEeeeccc--e-EEEecC-----------CCceEEEEeccCCchhhHHhhhcc
Confidence 45788888877 455555555555555554433 2 444322 122355666666544445567899
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc------eeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756 84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR------PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 157 (321)
Q Consensus 84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~------~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~ 157 (321)
.|..+.|+. .+++++ ..|..+.+||+..- .+..-|...+|.+.|+ .++|++++ .|.+|++|+..+
T Consensus 279 aVLhlrf~n--g~mvtc--SkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsAS---gDRTikvW~~st 349 (499)
T KOG0281|consen 279 AVLHLRFSN--GYMVTC--SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSAS---GDRTIKVWSTST 349 (499)
T ss_pred eeEEEEEeC--CEEEEe--cCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEec---CCceEEEEeccc
Confidence 999999984 356665 66889999998532 1222278899999997 56999998 899999999999
Q ss_pred CeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee--EEeccCceEEEEE
Q 020756 158 GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FKKMFDKLFQAEW 219 (321)
Q Consensus 158 ~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~~~~~~~~~~~w 219 (321)
++++.++.+| .+.++. -.|++++++++ |++|+|||+. |.++ .++|.+-+..+.|
T Consensus 350 ~efvRtl~gHkRGIAClQ--Yr~rlvVSGSS------DntIRlwdi~~G~cLRvLeGHEeLvRciRF 408 (499)
T KOG0281|consen 350 CEFVRTLNGHKRGIACLQ--YRDRLVVSGSS------DNTIRLWDIECGACLRVLEGHEELVRCIRF 408 (499)
T ss_pred eeeehhhhcccccceehh--ccCeEEEecCC------CceEEEEeccccHHHHHHhchHHhhhheee
Confidence 9999999988 555544 47999999997 9999999994 5444 5555554444444
No 177
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.11 E-value=2e-09 Score=95.23 Aligned_cols=117 Identities=18% Similarity=0.352 Sum_probs=89.9
Q ss_pred eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc--eeEE---eCCcCeeeEEEcCCCCeEEEEccCCCCCcEE
Q 020756 77 VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PILE---LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMA 151 (321)
Q Consensus 77 v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~--~~~~---~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~ 151 (321)
++-..++.|.+++|||....|+.+ |.-|++|++|++... .+-. -+.+++-++.|+-||..+++++ .|+.++
T Consensus 22 v~~pP~DsIS~l~FSP~~~~~~~A-~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~---~Dk~~k 97 (347)
T KOG0647|consen 22 VPNPPEDSISALAFSPQADNLLAA-GSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGG---CDKQAK 97 (347)
T ss_pred cCCCcccchheeEeccccCceEEe-cccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeec---cCCceE
Confidence 333468899999999965555544 788999999998542 2211 1789999999999999999999 999999
Q ss_pred EEECCCCeEEEeeeCC-CeeeEEEccCCC--EEEEEEcCCceeecCcEEEEeecC
Q 020756 152 FWDYVDGKQLGTTRAE-CSVTSEWSPDGR--YFMTATTAPRLQIDNGIKIFHHNG 203 (321)
Q Consensus 152 iwD~~~~~~i~~~~~~-~~~~~~wSpdG~--~l~t~~s~~rl~~d~~v~iw~~~g 203 (321)
+||+.+++....-.+. .+-.+.|=+... .|+|++ -|.+++.||...
T Consensus 98 ~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGS------WDKTlKfWD~R~ 146 (347)
T KOG0647|consen 98 LWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGS------WDKTLKFWDTRS 146 (347)
T ss_pred EEEccCCCeeeeeecccceeEEEEecCCCcceeEecc------cccceeecccCC
Confidence 9999999544433332 677888877655 677777 499999999853
No 178
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.10 E-value=4.2e-09 Score=103.53 Aligned_cols=186 Identities=13% Similarity=0.170 Sum_probs=128.0
Q ss_pred CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC
Q 020756 4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG 83 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~ 83 (321)
+-.++||++.+ ++++...........-+. .+..+++..+ ...++..+++....-..+...|.+
T Consensus 270 D~t~rvWd~~s---g~C~~~l~gh~stv~~~~---~~~~~~~sgs-----------~D~tVkVW~v~n~~~l~l~~~h~~ 332 (537)
T KOG0274|consen 270 DKTERVWDCST---GECTHSLQGHTSSVRCLT---IDPFLLVSGS-----------RDNTVKVWDVTNGACLNLLRGHTG 332 (537)
T ss_pred CCcEEeEecCC---CcEEEEecCCCceEEEEE---ccCceEeecc-----------CCceEEEEeccCcceEEEeccccc
Confidence 55788999777 677766554332222111 1122222211 223355556554433333333999
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC-e
Q 020756 84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-K 159 (321)
Q Consensus 84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~-~ 159 (321)
+|+++..+ +.+++. |..|+.|.+||.. ++.+.++ |...|.++.+.+. ..++.++ .|+.|++||+++. +
T Consensus 333 ~V~~v~~~--~~~lvs--gs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs---~D~~IkvWdl~~~~~ 404 (537)
T KOG0274|consen 333 PVNCVQLD--EPLLVS--GSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGS---LDTTIKVWDLRTKRK 404 (537)
T ss_pred cEEEEEec--CCEEEE--EecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeee---eccceEeecCCchhh
Confidence 99999999 556655 5678899999984 5566666 8889999988766 8888888 9999999999999 9
Q ss_pred EEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEE--e-ccCceEEEEEe
Q 020756 160 QLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFK--K-MFDKLFQAEWK 220 (321)
Q Consensus 160 ~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~--~-~~~~~~~~~w~ 220 (321)
++.++.+|....-.....+++|++++ .|+.|++||. +++++.. . +...+..+.+.
T Consensus 405 c~~tl~~h~~~v~~l~~~~~~Lvs~~------aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~ 463 (537)
T KOG0274|consen 405 CIHTLQGHTSLVSSLLLRDNFLVSSS------ADGTIKLWDAEEGECLRTLEGRHVGGVSALALG 463 (537)
T ss_pred hhhhhcCCcccccccccccceeEecc------ccccEEEeecccCceeeeeccCCcccEEEeecC
Confidence 99999998555456677899999999 5999999998 4555533 3 34566666665
No 179
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.10 E-value=4e-10 Score=106.20 Aligned_cols=90 Identities=20% Similarity=0.417 Sum_probs=76.6
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 158 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~ 158 (321)
++.|+.++|||||++||++ ..|+.++|||.....+..+ --+..-|+.|||||++|+++| .|--|.||.+..+
T Consensus 290 ~g~in~f~FS~DG~~LA~V--SqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGG---EDDLVtVwSf~er 364 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATV--SQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGG---EDDLVTVWSFEER 364 (636)
T ss_pred cccccceeEcCCCceEEEE--ecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecC---CcceEEEEEeccc
Confidence 6799999999999999998 6689999999977655444 246788999999999999999 8889999999999
Q ss_pred eEEEeeeCC--CeeeEEEcc
Q 020756 159 KQLGTTRAE--CSVTSEWSP 176 (321)
Q Consensus 159 ~~i~~~~~~--~~~~~~wSp 176 (321)
+.+..-++| .++.++|.|
T Consensus 365 RVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 365 RVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred eEEEeccccccceeeEeecc
Confidence 988887777 677777763
No 180
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.09 E-value=1e-09 Score=102.67 Aligned_cols=201 Identities=11% Similarity=0.137 Sum_probs=134.6
Q ss_pred eEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC---CC
Q 020756 6 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR---KE 82 (321)
Q Consensus 6 ~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~---~~ 82 (321)
.++||++....-..+.-.-+ -.-.+.++.|+.... ++++++. +..+..++...+....|++- ..
T Consensus 13 ~~kl~D~s~~~~~~~~~~~t-~~pg~~s~~w~~~n~--lvvas~~----------gdk~~~~~~K~g~~~~Vp~~~k~~g 79 (673)
T KOG4378|consen 13 KTKLSDFSDLETKSEYVHQT-AEPGDFSFNWQRRNF--LVVASMA----------GDKVMRIKEKDGKTPEVPRVRKLTG 79 (673)
T ss_pred ceEEeecccccCccccccCC-CCCcceeeeccccce--EEEeecC----------CceeEEEecccCCCCccceeecccc
Confidence 57899988743112221112 123477899998654 4544332 22233333322222222221 11
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 159 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~ 159 (321)
+.-.+++....+.++ |.|...+.+.|||++.+.++.+ |...|.++.|+-...+|+..+ ..|+|.|..+.++.
T Consensus 80 d~~~Cv~~~s~S~y~--~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs---~gGdiiih~~~t~~ 154 (673)
T KOG4378|consen 80 DNAFCVACASQSLYE--ISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVS---DGGDIIIHGTKTKQ 154 (673)
T ss_pred chHHHHhhhhcceee--eccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEec---cCCcEEEEecccCc
Confidence 222233333333444 4477788999999998877776 778899999999999999998 88999999999998
Q ss_pred EEEeeeCC---CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee----EEeccCceEEEEEecCCCCCCCC
Q 020756 160 QLGTTRAE---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF----FKKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 160 ~i~~~~~~---~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l----~~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
....|... .+..+.+||.-++++...+ .++.|.+||++|..- .+.|...+..++|+|..+.++-.
T Consensus 155 ~tt~f~~~sgqsvRll~ys~skr~lL~~as-----d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vs 226 (673)
T KOG4378|consen 155 KTTTFTIDSGQSVRLLRYSPSKRFLLSIAS-----DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVS 226 (673)
T ss_pred cccceecCCCCeEEEeecccccceeeEeec-----cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEE
Confidence 87777765 3446899999999887776 478899999999754 33566788889999988776644
No 181
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.09 E-value=8.6e-09 Score=95.79 Aligned_cols=202 Identities=11% Similarity=0.113 Sum_probs=145.1
Q ss_pred CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEE----EcCCCc--ee-
Q 020756 3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYL----TTDGTH--EG- 75 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l----~~~g~~--~~- 75 (321)
.-+.+-+|.+.+ |..+..+..+=.+...+.|+-||.+++... +. |...+|.+ +.+... ..
T Consensus 101 i~g~lYlWelss---G~LL~v~~aHYQ~ITcL~fs~dgs~iiTgs-----kD-----g~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 101 ISGNLYLWELSS---GILLNVLSAHYQSITCLKFSDDGSHIITGS-----KD-----GAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred ccCcEEEEEecc---ccHHHHHHhhccceeEEEEeCCCcEEEecC-----CC-----ccEEEEEEEeecccccCCCccce
Confidence 678899999999 777766666656788899999999887631 11 33334443 222221 11
Q ss_pred eeecCCCCCeEEEEECcCCC--EEEEEEccCCCeEEEEeCC-CceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEE
Q 020756 76 LVPLRKEGPVHDVQWSYSGS--EFAVVYGFMPASATIFNKK-CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMA 151 (321)
Q Consensus 76 ~v~l~~~~~v~~~~wsP~g~--~l~~~~g~~~~~i~i~d~~-~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~ 151 (321)
.+--+|.-+|+|+...+-|. ++++ ...|.++++||+. +..+.++ -...++++...|-++.+..++ .+|.|.
T Consensus 168 ~~f~~HtlsITDl~ig~Gg~~~rl~T--aS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt---~~G~I~ 242 (476)
T KOG0646|consen 168 HIFSDHTLSITDLQIGSGGTNARLYT--ASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGT---EEGKIF 242 (476)
T ss_pred eeeccCcceeEEEEecCCCccceEEE--ecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecC---CcceEE
Confidence 12224788999999987654 4555 4779999999995 5566666 467889999999999998888 889999
Q ss_pred EEECCCC----------------eEEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee-E--E
Q 020756 152 FWDYVDG----------------KQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF-F--K 208 (321)
Q Consensus 152 iwD~~~~----------------~~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l-~--~ 208 (321)
+.++.+. ..+..+.+| .|++++.|-||..|+++. .|+.+.|||+..+++ . .
T Consensus 243 ~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd------~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 243 QNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGD------EDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred eeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeC------CCCCEEEEecchHHHHHHHh
Confidence 8876532 233334443 689999999999999999 499999999965544 2 2
Q ss_pred eccCceEEEEEecCCCCCCC
Q 020756 209 KMFDKLFQAEWKPVSPDKFG 228 (321)
Q Consensus 209 ~~~~~~~~~~w~P~~~~~~~ 228 (321)
...+.|..+..+|-.+.++.
T Consensus 317 ~~kgpVtnL~i~~~~~~~~l 336 (476)
T KOG0646|consen 317 TSKGPVTNLQINPLERGIIL 336 (476)
T ss_pred hhccccceeEeeccccceec
Confidence 25578888888886655554
No 182
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.08 E-value=1.9e-09 Score=98.68 Aligned_cols=101 Identities=18% Similarity=0.366 Sum_probs=85.5
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC--------C-----c---ee-EEe--CCcCeeeEEEcCCCCeEEEE
Q 020756 81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--------C-----R---PI-LEL--GSGPYNTVRWNPKGKFLCLA 141 (321)
Q Consensus 81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~--------~-----~---~~-~~~--~~~~~~~~~~sPdG~~l~~~ 141 (321)
|...|+.+.|+|+|+.|+. |..++.+.+|-.. + + .+ ..+ |...+..++|+||+.+++++
T Consensus 64 H~~aVN~vRf~p~gelLAS--g~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~ 141 (434)
T KOG1009|consen 64 HTRAVNVVRFSPDGELLAS--GGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSG 141 (434)
T ss_pred CcceeEEEEEcCCcCeeee--cCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeee
Confidence 7899999999999999998 4667899999553 2 1 11 112 66788999999999999999
Q ss_pred ccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEc
Q 020756 142 GFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATT 186 (321)
Q Consensus 142 g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s 186 (321)
+ .+..+++||+..|..+..+..| .+..++|.|-++|+++-++
T Consensus 142 s---~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~ 185 (434)
T KOG1009|consen 142 S---VDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSS 185 (434)
T ss_pred e---ccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhcc
Confidence 9 9999999999999998888776 6777999999999999886
No 183
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.07 E-value=7.3e-09 Score=97.20 Aligned_cols=111 Identities=17% Similarity=0.364 Sum_probs=91.3
Q ss_pred ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC
Q 020756 78 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 155 (321)
Q Consensus 78 ~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~ 155 (321)
+...++++.++.|+|.| .+++ |...+...+.|.....+.++ ...+++.++|||+|.+|++++ .|+.|+||-+
T Consensus 403 t~~~~d~~~~~~fhpsg-~va~--Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs---~d~~iyiy~V 476 (626)
T KOG2106|consen 403 TKIIEDPAECADFHPSG-VVAV--GTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS---HDNHIYIYRV 476 (626)
T ss_pred EEEecCceeEeeccCcc-eEEE--eeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEec---CCCeEEEEEE
Confidence 33357899999999999 6666 77788999999987766665 478999999999999999999 8999999987
Q ss_pred CCC-e---EEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEe
Q 020756 156 VDG-K---QLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 200 (321)
Q Consensus 156 ~~~-~---~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~ 200 (321)
... . .+.......++.+.||+|++||.+-+ .|-.+..|.
T Consensus 477 s~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S------~d~eiLyW~ 519 (626)
T KOG2106|consen 477 SANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNS------GDYEILYWK 519 (626)
T ss_pred CCCCcEEEEeeeecCceeEEeeecCCCceEEecc------CceEEEEEc
Confidence 643 2 33444445899999999999999998 489999994
No 184
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.07 E-value=4.3e-08 Score=92.12 Aligned_cols=140 Identities=14% Similarity=0.187 Sum_probs=112.2
Q ss_pred eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEE-eCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC
Q 020756 77 VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 155 (321)
Q Consensus 77 v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~-~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~ 155 (321)
+.+.|.+..-.++-+|+..+|+++ ..|+.+.||+ +.+++.+ +-..++.++.|+|.| .|+++. ..|...+.|.
T Consensus 363 ~v~gh~delwgla~hps~~q~~T~--gqdk~v~lW~-~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt---~~G~w~V~d~ 435 (626)
T KOG2106|consen 363 TVQGHGDELWGLATHPSKNQLLTC--GQDKHVRLWN-DHKLEWTKIIEDPAECADFHPSG-VVAVGT---ATGRWFVLDT 435 (626)
T ss_pred EEEecccceeeEEcCCChhheeec--cCcceEEEcc-CCceeEEEEecCceeEeeccCcc-eEEEee---ccceEEEEec
Confidence 334577788899999999999997 6688999999 4444443 357789999999999 778777 7899999999
Q ss_pred CCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee--cCcee---EEeccCceEEEEEecCCCCCCCC
Q 020756 156 VDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH--NGSLF---FKKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 156 ~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~--~g~~l---~~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
++...+...... .++.+.|||||.+||.++ .|+.|+||.+ +|+.+ -+.+-..+..+.|++|+..+.+.
T Consensus 436 e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs------~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~ 509 (626)
T KOG2106|consen 436 ETQDLVTIHTDNEQLSVVRYSPDGAFLAVGS------HDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSN 509 (626)
T ss_pred ccceeEEEEecCCceEEEEEcCCCCEEEEec------CCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEec
Confidence 987766655443 788899999999999999 4999999998 45554 22334789999999999988864
No 185
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=7.8e-10 Score=112.11 Aligned_cols=180 Identities=17% Similarity=0.326 Sum_probs=130.6
Q ss_pred CCceEEEEEcCCcCCCCceee-eecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756 3 SPASVQIYACGKDLQSQPLAR-RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK 81 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~~i~~-~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~ 81 (321)
-.|.|-||++-+. ..+..- ..-+..++..+.||..-..|+..++ .+ |.. ..|++... ...+.+..
T Consensus 137 ~~geI~iWDlnn~--~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s----~s-----g~~--~iWDlr~~-~pii~ls~ 202 (1049)
T KOG0307|consen 137 DDGEILIWDLNKP--ETPFTPGSQAPPSEIKCLSWNRKVSHILASGS----PS-----GRA--VIWDLRKK-KPIIKLSD 202 (1049)
T ss_pred CCCcEEEeccCCc--CCCCCCCCCCCcccceEeccchhhhHHhhccC----CC-----CCc--eeccccCC-Cccccccc
Confidence 4688999999984 344433 3336788999999999888887532 11 222 33344443 34455443
Q ss_pred C---CCeEEEEECcCCC-EEEEEEccCC-CeEEEEeCCCc--eeEE--eCCcCeeeEEEcCCC-CeEEEEccCCCCCcEE
Q 020756 82 E---GPVHDVQWSYSGS-EFAVVYGFMP-ASATIFNKKCR--PILE--LGSGPYNTVRWNPKG-KFLCLAGFGNLPGDMA 151 (321)
Q Consensus 82 ~---~~v~~~~wsP~g~-~l~~~~g~~~-~~i~i~d~~~~--~~~~--~~~~~~~~~~~sPdG-~~l~~~g~~n~~g~i~ 151 (321)
. ..++.++|+|++. +++++.++.. -.|.+||++.- ++.. .|...+-++.|++.+ ++|+++| .|+.|.
T Consensus 203 ~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsg---kD~~ii 279 (1049)
T KOG0307|consen 203 TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSG---KDNRII 279 (1049)
T ss_pred CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhccc---CCCCee
Confidence 3 3488999999866 6666644322 28999998643 4444 488899999999988 7888888 999999
Q ss_pred EEECCCCeEEEeeeC--CCeeeEEEccCCC-EEEEEEcCCceeecCcEEEEeecCce
Q 020756 152 FWDYVDGKQLGTTRA--ECSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHHNGSL 205 (321)
Q Consensus 152 iwD~~~~~~i~~~~~--~~~~~~~wSpdG~-~l~t~~s~~rl~~d~~v~iw~~~g~~ 205 (321)
+|+.++++.+..+.. ..+..+.|+|..- .|+.++ .|+.|.||.+.|..
T Consensus 280 ~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~as------fdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 280 CWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAAS------FDGKISIYSLQGTD 330 (1049)
T ss_pred EecCCCceEeeecCCCCcceeeeeecCCCcchhhhhe------eccceeeeeeecCC
Confidence 999999999998876 4788999999766 445555 69999999996543
No 186
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.06 E-value=2.6e-09 Score=98.09 Aligned_cols=132 Identities=19% Similarity=0.269 Sum_probs=103.3
Q ss_pred EEEEECcCCCEEEEEEccCCCeEEEEeC-CCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEE
Q 020756 86 HDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG 162 (321)
Q Consensus 86 ~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~ 162 (321)
..++++.+|..+++ |..|+.+++|+. ....+..+ |+..|.++.|||||++|++.| .+ ...|||++++..+.
T Consensus 148 k~vaf~~~gs~lat--gg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig---~d-~~~VW~~~~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLAT--GGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIG---AD-SARVWSVNTGAALA 221 (398)
T ss_pred eEEEEcCCCCEeee--ccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEec---CC-ceEEEEeccCchhh
Confidence 67999999999999 678999999995 44444444 789999999999999999998 77 88999988761111
Q ss_pred e-------------------------------------------ee------------CC-CeeeEEEccCCCEEEEEEc
Q 020756 163 T-------------------------------------------TR------------AE-CSVTSEWSPDGRYFMTATT 186 (321)
Q Consensus 163 ~-------------------------------------------~~------------~~-~~~~~~wSpdG~~l~t~~s 186 (321)
. .. .+ .+++++.|.||+|++.++
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT- 300 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGT- 300 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEec-
Confidence 0 00 12 567789999999999999
Q ss_pred CCceeecCcEEEEeecC-cee---EEeccCceEEEEEecCCCCCCCC
Q 020756 187 APRLQIDNGIKIFHHNG-SLF---FKKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 187 ~~rl~~d~~v~iw~~~g-~~l---~~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
.|+.|-|++... +.+ .+.|..-|..+.|+|+..++.+.
T Consensus 301 -----~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~sv 342 (398)
T KOG0771|consen 301 -----MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASV 342 (398)
T ss_pred -----cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCccccc
Confidence 599999999843 333 23355689999999998877764
No 187
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.06 E-value=6.4e-09 Score=96.49 Aligned_cols=159 Identities=17% Similarity=0.261 Sum_probs=110.7
Q ss_pred cceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC---ce---eEEe-CCcCeeeEEEc
Q 020756 60 GESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---RP---ILEL-GSGPYNTVRWN 132 (321)
Q Consensus 60 g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~---~~---~~~~-~~~~~~~~~~s 132 (321)
|..+++.+..++..-..+. -|+..|..++++|-..+++.. +..|.+++|||++. +. +.++ |...|++..||
T Consensus 301 G~f~~iD~R~~~s~~~~~~-lh~kKI~sv~~NP~~p~~laT-~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS 378 (498)
T KOG4328|consen 301 GNFNVIDLRTDGSEYENLR-LHKKKITSVALNPVCPWFLAT-ASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFS 378 (498)
T ss_pred cceEEEEeecCCccchhhh-hhhcccceeecCCCCchheee-cccCcceeeeehhhhcCCCCcceecccccceeeeeEEc
Confidence 4444555555554222222 256699999999987765544 46688999999842 22 3444 88899999999
Q ss_pred CCCCeEEEEccCCCCCcEEEEECC----CCeEEEeeeCC-------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756 133 PKGKFLCLAGFGNLPGDMAFWDYV----DGKQLGTTRAE-------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 201 (321)
Q Consensus 133 PdG~~l~~~g~~n~~g~i~iwD~~----~~~~i~~~~~~-------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~ 201 (321)
|.|-.|++.+ .|..|.|||.. ......++.+. ......|.||-.+|+.+. .-..|-|+|-
T Consensus 379 Ps~gtl~TT~---~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~------~~r~IDv~~~ 449 (498)
T KOG4328|consen 379 PSGGTLLTTC---QDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGR------YPRPIDVFDG 449 (498)
T ss_pred CCCCceEeec---cCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEec------cCcceeEEcC
Confidence 9988899998 89999999983 33455555443 233479999999999888 4667999998
Q ss_pred cCce-eEEeccCc---e-EEEEEecCCCCCCCC
Q 020756 202 NGSL-FFKKMFDK---L-FQAEWKPVSPDKFGD 229 (321)
Q Consensus 202 ~g~~-l~~~~~~~---~-~~~~w~P~~~~~~~~ 229 (321)
+|+. +...+... | .-..|+|....++..
T Consensus 450 ~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG 482 (498)
T KOG4328|consen 450 NGGQMVCELHDPESSTIPSVNEFHPMRDTLAAG 482 (498)
T ss_pred CCCEEeeeccCccccccccceeecccccceecc
Confidence 8776 45444432 2 346899987766654
No 188
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.06 E-value=2.6e-07 Score=86.72 Aligned_cols=178 Identities=16% Similarity=0.261 Sum_probs=114.1
Q ss_pred CceEEEEEcCCcCCCCceeeeecc-------------cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcC
Q 020756 4 PASVQIYACGKDLQSQPLARRSFF-------------RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD 70 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f-------------~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~ 70 (321)
-+.|.+|++... +........+ ......+.++|+|+++++.. . |.+.|+.++.+
T Consensus 108 ~g~v~v~~l~~~--g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~d---l--------G~D~v~~~~~~ 174 (345)
T PF10282_consen 108 GGSVSVFPLDDD--GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPD---L--------GADRVYVYDID 174 (345)
T ss_dssp TTEEEEEEECTT--SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEE---T--------TTTEEEEEEE-
T ss_pred CCeEEEEEccCC--cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEe---c--------CCCEEEEEEEe
Confidence 467888999872 2222221111 12234689999999998751 1 44556666554
Q ss_pred CCc-----eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC--Cc---eeEEeC--------CcCeeeEEEc
Q 020756 71 GTH-----EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CR---PILELG--------SGPYNTVRWN 132 (321)
Q Consensus 71 g~~-----~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~--~~---~~~~~~--------~~~~~~~~~s 132 (321)
... ...+.+.....-..+.|+|+|+++.++ ......|.+|++. .. .+..+. ......+.+|
T Consensus 175 ~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~-~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~is 253 (345)
T PF10282_consen 175 DDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVV-NELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAIS 253 (345)
T ss_dssp TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEE-ETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-
T ss_pred CCCceEEEeeccccccCCCCcEEEEcCCcCEEEEe-cCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEe
Confidence 432 123344555667789999999998887 4567799999875 22 222221 1246789999
Q ss_pred CCCCeEEEEccCCCCCcEEEEECC--CC--eEEEeeeC--CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756 133 PKGKFLCLAGFGNLPGDMAFWDYV--DG--KQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 133 PdG~~l~~~g~~n~~g~i~iwD~~--~~--~~i~~~~~--~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
|||++|.++.-+ ...|.+|+++ ++ +.+..+.. .....+.++|||++|+++.. .++.|.+|+++
T Consensus 254 pdg~~lyvsnr~--~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~-----~s~~v~vf~~d 322 (345)
T PF10282_consen 254 PDGRFLYVSNRG--SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQ-----DSNTVSVFDID 322 (345)
T ss_dssp TTSSEEEEEECT--TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEET-----TTTEEEEEEEE
T ss_pred cCCCEEEEEecc--CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEec-----CCCeEEEEEEe
Confidence 999999998733 4789999984 33 34444432 35788999999999999985 47889999883
No 189
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.05 E-value=4.6e-09 Score=93.57 Aligned_cols=183 Identities=14% Similarity=0.277 Sum_probs=133.3
Q ss_pred CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEec------------ccC----CCceeecceeEEE
Q 020756 3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSD------------VDK----TNQSYYGESKLNY 66 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d------------~d~----t~~s~~g~~~l~~ 66 (321)
++..-+||.+.+ +.++.+-.-+...+..++|++.|..++...... +.+ ++.+ ++..+-.
T Consensus 168 ADhTA~iWs~Es---g~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hS--sEeE~e~ 242 (481)
T KOG0300|consen 168 ADHTARIWSLES---GACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHS--SEEEEEH 242 (481)
T ss_pred cccceeEEeecc---ccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCC--chhhhhc
Confidence 456679999999 899999998888899999999887766542110 001 1111 1111110
Q ss_pred -------E----EcCCCceeeeec----CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeee
Q 020756 67 -------L----TTDGTHEGLVPL----RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNT 128 (321)
Q Consensus 67 -------l----~~~g~~~~~v~l----~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~ 128 (321)
. ..+|- .-++++ .|.+.|.++.|--.|+++++. .-|.+..+||+. ++++..+ |....+.
T Consensus 243 sDe~~~d~d~~~~sD~~-tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTa--SWDRTAnlwDVEtge~v~~LtGHd~ELtH 319 (481)
T KOG0300|consen 243 SDEHNRDTDSSEKSDGH-TIRVPLMRLTGHRAVVSACDWLAGGQQMVTA--SWDRTANLWDVETGEVVNILTGHDSELTH 319 (481)
T ss_pred ccccccccccccccCCc-eeeeeeeeeeccccceEehhhhcCcceeeee--eccccceeeeeccCceeccccCcchhccc
Confidence 0 01111 222332 378899999999999999884 778899999995 4555555 7888899
Q ss_pred EEEcCCCCeEEEEccCCCCCcEEEEECCCC-eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756 129 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 203 (321)
Q Consensus 129 ~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~-~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g 203 (321)
+.-+|..+++++++ .|.+.++||.+.- ..+..|.+| .++++.|.-|.+ +++++. |.+++|||+..
T Consensus 320 cstHptQrLVvTsS---rDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSD------DrTvKvWdLrN 387 (481)
T KOG0300|consen 320 CSTHPTQRLVVTSS---RDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSD------DRTVKVWDLRN 387 (481)
T ss_pred cccCCcceEEEEec---cCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecCC------CceEEEeeecc
Confidence 99999999999998 8999999998743 567888887 688888988876 677774 99999999853
No 190
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.05 E-value=1.2e-07 Score=87.41 Aligned_cols=203 Identities=17% Similarity=0.301 Sum_probs=134.8
Q ss_pred CCceEEEEEcCCcCCCC-ceeeeecccC-ccceEEe-CCCCCeeEEEEEecccCCCceeecceeEEEEEcCC-Cceeeee
Q 020756 3 SPASVQIYACGKDLQSQ-PLARRSFFRC-STVQLNW-NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDG-THEGLVP 78 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~-~i~~~~~f~~-~~~~~~W-sp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g-~~~~~v~ 78 (321)
..+.|.+|++.. .. .+........ ....+.+ ++++..++.... ..| + .+..++... .......
T Consensus 85 ~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d-------~--~~~~~~~~~~~~~~~~~ 151 (466)
T COG2319 85 SDGTIKLWDLDN---GEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS-SLD-------G--TVKLWDLSTPGKLIRTL 151 (466)
T ss_pred CCCcEEEEEcCC---CceeEEEEeccCCCceeeEEEECCCcceEEeccC-CCC-------c--cEEEEEecCCCeEEEEE
Confidence 367888999887 33 3444433222 3455555 777773333211 111 1 234444443 2233344
Q ss_pred cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEE-ccCCCCCcEEEEE
Q 020756 79 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLA-GFGNLPGDMAFWD 154 (321)
Q Consensus 79 l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~-g~~n~~g~i~iwD 154 (321)
..|...|.++.|+|++..++.. +..++.+.+|+... ..+..+ |...+.++.|+|++..++++ + .++.|.+||
T Consensus 152 ~~~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~d~~i~~wd 227 (466)
T COG2319 152 EGHSESVTSLAFSPDGKLLASG-SSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGS---SDGTIRLWD 227 (466)
T ss_pred ecCcccEEEEEECCCCCEEEec-CCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEec---CCCcEEEEE
Confidence 4678899999999999977764 22488999999974 455554 67899999999999945544 5 789999999
Q ss_pred CCCCeEEE-eeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce--e--EEeccCceEEEEEecCCCCCCC
Q 020756 155 YVDGKQLG-TTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL--F--FKKMFDKLFQAEWKPVSPDKFG 228 (321)
Q Consensus 155 ~~~~~~i~-~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~--l--~~~~~~~~~~~~w~P~~~~~~~ 228 (321)
...+..+. .+..+ ......|+|++.++++++ .|+.+++|+..... + ...+...+..+.|.|+...++.
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 228 LSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGS------SDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred CCCCcEEeeecCCCCcceeEeECCCCCEEEEec------CCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE
Confidence 98777776 46555 221228999998888777 49999999985322 2 2245678899999996665554
No 191
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.04 E-value=1.1e-07 Score=89.11 Aligned_cols=210 Identities=18% Similarity=0.211 Sum_probs=132.2
Q ss_pred CCceEEEEEcCCcC-CCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee-c-
Q 020756 3 SPASVQIYACGKDL-QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-L- 79 (321)
Q Consensus 3 ~p~~v~v~~~~~~~-~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~-l- 79 (321)
..+.|..|.+.... .-+.+.+........|.+..+|+|++|++.-- ..|...++.++.+|....... +
T Consensus 60 ~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany---------~~g~v~v~~l~~~g~l~~~~~~~~ 130 (345)
T PF10282_consen 60 DSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANY---------GGGSVSVFPLDDDGSLGEVVQTVR 130 (345)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEET---------TTTEEEEEEECTTSEEEEEEEEEE
T ss_pred CCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEc---------cCCeEEEEEccCCcccceeeeecc
Confidence 56788899988721 01233333333456689999999999988520 024444555555554333221 1
Q ss_pred ----------CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCce--e---E--Ee-CCcCeeeEEEcCCCCeEEEE
Q 020756 80 ----------RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP--I---L--EL-GSGPYNTVRWNPKGKFLCLA 141 (321)
Q Consensus 80 ----------~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~--~---~--~~-~~~~~~~~~~sPdG~~l~~~ 141 (321)
......|.+.|+|+|++++++.-.. ..|.+|+++... + . .+ ....-..+.|+|+|+++.+.
T Consensus 131 ~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~-D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~ 209 (345)
T PF10282_consen 131 HEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGA-DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVV 209 (345)
T ss_dssp SEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTT-TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEE
T ss_pred cCCCCCcccccccccceeEEECCCCCEEEEEecCC-CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEe
Confidence 1234678999999999998875333 389999885432 2 2 22 22344578899999999887
Q ss_pred ccCCCCCcEEEEECC--CCe--EEEeeeC-------C-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec---Ccee
Q 020756 142 GFGNLPGDMAFWDYV--DGK--QLGTTRA-------E-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN---GSLF 206 (321)
Q Consensus 142 g~~n~~g~i~iwD~~--~~~--~i~~~~~-------~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~---g~~l 206 (321)
. .+.+.|.++++. ++. .+..... . ....+.+||||++|.++.. ..+.|.+|+++ |.+-
T Consensus 210 ~--e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr-----~~~sI~vf~~d~~~g~l~ 282 (345)
T PF10282_consen 210 N--ELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNR-----GSNSISVFDLDPATGTLT 282 (345)
T ss_dssp E--TTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC-----TTTEEEEEEECTTTTTEE
T ss_pred c--CCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEec-----cCCEEEEEEEecCCCceE
Confidence 6 366899999987 442 2332221 1 4567999999999998884 58899999994 3433
Q ss_pred EEe--c--cCceEEEEEecCCCCCCCC
Q 020756 207 FKK--M--FDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 207 ~~~--~--~~~~~~~~w~P~~~~~~~~ 229 (321)
... . -..-..+.++|++..++-.
T Consensus 283 ~~~~~~~~G~~Pr~~~~s~~g~~l~Va 309 (345)
T PF10282_consen 283 LVQTVPTGGKFPRHFAFSPDGRYLYVA 309 (345)
T ss_dssp EEEEEEESSSSEEEEEE-TTSSEEEEE
T ss_pred EEEEEeCCCCCccEEEEeCCCCEEEEE
Confidence 222 1 2347889999999888854
No 192
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.03 E-value=2.8e-08 Score=97.75 Aligned_cols=179 Identities=13% Similarity=0.147 Sum_probs=126.4
Q ss_pred ceEEEEEcCCcCCCCceee-eecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec-CCC
Q 020756 5 ASVQIYACGKDLQSQPLAR-RSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-RKE 82 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~-~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l-~~~ 82 (321)
..+++|+.-+ +..+.. ..-+..++..+.+.. |..+++..++| . ++.+++...+ .+...+ .|.
T Consensus 228 ~tl~~~~~~~---~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D---------~--t~rvWd~~sg-~C~~~l~gh~ 291 (537)
T KOG0274|consen 228 STLHLWDLNN---GYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTD---------K--TERVWDCSTG-ECTHSLQGHT 291 (537)
T ss_pred ceeEEeeccc---ceEEEeeccCCCCCceeEEEec-CCCEEEEEecC---------C--cEEeEecCCC-cEEEEecCCC
Confidence 4567888877 566655 666667777777766 66666655433 1 2444454443 344333 477
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 159 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~ 159 (321)
..|..+...+. ..+.|.+|.+|++|++... .+..+ |..+|+++..+ +.+|++++ .|+.|.+||..+++
T Consensus 292 stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs---~d~~v~VW~~~~~~ 362 (537)
T KOG0274|consen 292 SSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGS---YDGTVKVWDPRTGK 362 (537)
T ss_pred ceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEe---cCceEEEEEhhhce
Confidence 77777776642 2333789999999999744 44444 78999999998 88999998 89999999999999
Q ss_pred EEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc--ee--EEeccCceE
Q 020756 160 QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS--LF--FKKMFDKLF 215 (321)
Q Consensus 160 ~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~--~l--~~~~~~~~~ 215 (321)
++.++.+| .+..+.+... .++++++ .|..|++||+.+. ++ +..|..-+.
T Consensus 363 cl~sl~gH~~~V~sl~~~~~-~~~~Sgs------~D~~IkvWdl~~~~~c~~tl~~h~~~v~ 417 (537)
T KOG0274|consen 363 CLKSLSGHTGRVYSLIVDSE-NRLLSGS------LDTTIKVWDLRTKRKCIHTLQGHTSLVS 417 (537)
T ss_pred eeeeecCCcceEEEEEecCc-ceEEeee------eccceEeecCCchhhhhhhhcCCccccc
Confidence 99999998 5666666555 8888888 5999999999765 33 444544443
No 193
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.03 E-value=1.8e-08 Score=93.77 Aligned_cols=198 Identities=12% Similarity=0.019 Sum_probs=145.2
Q ss_pred eEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCe
Q 020756 6 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPV 85 (321)
Q Consensus 6 ~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v 85 (321)
.|-+|.+-. .....++-.-......+.=+|+|.+|+..+- ..+||+|.+..+..-.+--.|-.+|
T Consensus 62 ~l~vw~i~k---~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i------------~g~lYlWelssG~LL~v~~aHYQ~I 126 (476)
T KOG0646|consen 62 LLHVWEILK---KDQVVQYIVLPGPVHALASSNLGYFLLAGTI------------SGNLYLWELSSGILLNVLSAHYQSI 126 (476)
T ss_pred cccccccCc---hhhhhhhcccccceeeeecCCCceEEEeecc------------cCcEEEEEeccccHHHHHHhhccce
Confidence 455666655 3334455555666777788999999877421 1247888776664433444589999
Q ss_pred EEEEECcCCCEEEEEEccCCCeEEEEeC----------CCceeEEe--CCcCeeeEEEcCC--CCeEEEEccCCCCCcEE
Q 020756 86 HDVQWSYSGSEFAVVYGFMPASATIFNK----------KCRPILEL--GSGPYNTVRWNPK--GKFLCLAGFGNLPGDMA 151 (321)
Q Consensus 86 ~~~~wsP~g~~l~~~~g~~~~~i~i~d~----------~~~~~~~~--~~~~~~~~~~sPd--G~~l~~~g~~n~~g~i~ 151 (321)
+++.|+-||.+|++ |..|+.|.+|++ ...+++.| |.-+|.++...+- ...|++++ .|.+++
T Consensus 127 TcL~fs~dgs~iiT--gskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS---~D~t~k 201 (476)
T KOG0646|consen 127 TCLKFSDDGSHIIT--GSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS---EDRTIK 201 (476)
T ss_pred eEEEEeCCCcEEEe--cCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEec---CCceEE
Confidence 99999999999998 688999999975 12466666 6678888766654 35788888 999999
Q ss_pred EEECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC---c----------------eeEEecc
Q 020756 152 FWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG---S----------------LFFKKMF 211 (321)
Q Consensus 152 iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g---~----------------~l~~~~~ 211 (321)
+||+..+..+.++.-+ .+.++..+|-++.+..++. ++.|.+.++.+ + ..+.+|.
T Consensus 202 ~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~------~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~ 275 (476)
T KOG0646|consen 202 LWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTE------EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHE 275 (476)
T ss_pred EEEeccceeeEEEecCCcceeEEEcccccEEEecCC------cceEEeeehhcCCcccccccccccccccceeeeecccc
Confidence 9999999998888776 7889999999999999984 88877776622 1 1244455
Q ss_pred C--ceEEEEEecCCCCCCCC
Q 020756 212 D--KLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 212 ~--~~~~~~w~P~~~~~~~~ 229 (321)
. .+..++.+-|+..+++.
T Consensus 276 ~~~~ITcLais~DgtlLlSG 295 (476)
T KOG0646|consen 276 NESAITCLAISTDGTLLLSG 295 (476)
T ss_pred CCcceeEEEEecCccEEEee
Confidence 4 78888888888777654
No 194
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.01 E-value=4.5e-08 Score=94.70 Aligned_cols=206 Identities=17% Similarity=0.319 Sum_probs=143.6
Q ss_pred CCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCC---------Cce-eecceeEEEEEcCC-
Q 020756 3 SPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKT---------NQS-YYGESKLNYLTTDG- 71 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t---------~~s-~~g~~~l~~l~~~g- 71 (321)
+..++-||+... +..+.+...+|.-+..+.|+.||..++... .|+. |-. |...+.+..+..+-
T Consensus 31 Ag~rlliyD~nd---G~llqtLKgHKDtVycVAys~dGkrFASG~---aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~ 104 (1081)
T KOG1538|consen 31 AGSRLLVYDTSD---GTLLQPLKGHKDTVYCVAYAKDGKRFASGS---ADKSVIIWTSKLEGILKYSHNDAIQCMSFNPI 104 (1081)
T ss_pred cCCEEEEEeCCC---cccccccccccceEEEEEEccCCceeccCC---CceeEEEecccccceeeeccCCeeeEeecCch
Confidence 456788888877 778888888888888899999998775432 1111 110 21222222222111
Q ss_pred ----------------Cceeeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe-----CCcCeeeE
Q 020756 72 ----------------THEGLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-----GSGPYNTV 129 (321)
Q Consensus 72 ----------------~~~~~v~l-~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~-----~~~~~~~~ 129 (321)
...+.|.- .....|.+++|..||++|++ |-.+|+|.|-+..+++...+ .+.++.++
T Consensus 105 ~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylal--G~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi 182 (1081)
T KOG1538|consen 105 THQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLAL--GMFNGTISIRNKNGEEKVKIERPGGSNSPIWSI 182 (1081)
T ss_pred HHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEE--eccCceEEeecCCCCcceEEeCCCCCCCCceEE
Confidence 00011110 12457889999999999999 56678999998877655544 36789999
Q ss_pred EEcCCC-----CeEEEEccCCCCCcEEEEECCCCeEEEeeeC--CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756 130 RWNPKG-----KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 130 ~~sPdG-----~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~--~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
.|+|.. ..|++.. ...++.||.+ +|+.|..... ....++++-++|+|++.+++ |..+++|.-.
T Consensus 183 ~~~p~sg~G~~di~aV~D---W~qTLSFy~L-sG~~Igk~r~L~FdP~CisYf~NGEy~LiGGs------dk~L~~fTR~ 252 (1081)
T KOG1538|consen 183 CWNPSSGEGRNDILAVAD---WGQTLSFYQL-SGKQIGKDRALNFDPCCISYFTNGEYILLGGS------DKQLSLFTRD 252 (1081)
T ss_pred EecCCCCCCccceEEEEe---ccceeEEEEe-cceeecccccCCCCchhheeccCCcEEEEccC------CCceEEEeec
Confidence 999963 3677776 7788999988 6777765444 26778899999999999997 9999999999
Q ss_pred CceeEE-ecc-CceEEEEEecCCCCC
Q 020756 203 GSLFFK-KMF-DKLFQAEWKPVSPDK 226 (321)
Q Consensus 203 g~~l~~-~~~-~~~~~~~w~P~~~~~ 226 (321)
|-++-. +.. ..+|.+.-+|.+.+.
T Consensus 253 GvrLGTvg~~D~WIWtV~~~PNsQ~v 278 (1081)
T KOG1538|consen 253 GVRLGTVGEQDSWIWTVQAKPNSQYV 278 (1081)
T ss_pred CeEEeeccccceeEEEEEEccCCceE
Confidence 988833 333 479999999987654
No 195
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.00 E-value=3.7e-08 Score=91.20 Aligned_cols=178 Identities=13% Similarity=0.187 Sum_probs=125.0
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK 81 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~ 81 (321)
|++..|.||++.. +++......+...+..+.|+|.-..+++.. +|-+...|+.+..-+...... .-
T Consensus 263 saD~TV~lWD~~~---g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsG---------s~D~~V~l~D~R~~~~s~~~w--k~ 328 (463)
T KOG0270|consen 263 SADKTVKLWDVDT---GKPKSSITHHGKKVQTLEWHPYEPSVLLSG---------SYDGTVALKDCRDPSNSGKEW--KF 328 (463)
T ss_pred CCCceEEEEEcCC---CCcceehhhcCCceeEEEecCCCceEEEec---------cccceEEeeeccCccccCceE--Ee
Confidence 5778999999999 888888888888889999999866666642 344555555443222212222 24
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC--CceeEEe--CCcCeeeEEEcCCCCeE-EEEccCCCCCcEEEEECC
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPILEL--GSGPYNTVRWNPKGKFL-CLAGFGNLPGDMAFWDYV 156 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~--~~~~~~~--~~~~~~~~~~sPdG~~l-~~~g~~n~~g~i~iwD~~ 156 (321)
.+.|-.+.|.|.....+++ +..+|.++-||++ ++++.++ |.++|.++.+++.-..+ ++++ .++.|.+|++.
T Consensus 329 ~g~VEkv~w~~~se~~f~~-~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s---~d~~Vklw~~~ 404 (463)
T KOG0270|consen 329 DGEVEKVAWDPHSENSFFV-STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS---TDKVVKLWKFD 404 (463)
T ss_pred ccceEEEEecCCCceeEEE-ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc---ccceEEEEeec
Confidence 5889999999998877766 5778999999996 4677777 89999999999986654 4555 78999999976
Q ss_pred CCe--EEE--eeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756 157 DGK--QLG--TTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 157 ~~~--~i~--~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
.-. .+. .+.-....+++..|+--++++.+. ..+.++|||+.
T Consensus 405 ~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG-----~k~~~~vwd~~ 449 (463)
T KOG0270|consen 405 VDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGG-----EKAVLRVWDIF 449 (463)
T ss_pred CCCCcccccccccccceeecccCCCcceEEEecC-----ccceEEEeecc
Confidence 432 222 121223455677787555554442 25579999984
No 196
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=8.4e-08 Score=92.90 Aligned_cols=158 Identities=16% Similarity=0.255 Sum_probs=120.2
Q ss_pred cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 020756 28 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS 107 (321)
Q Consensus 28 ~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~ 107 (321)
...++.|++|.+.+.|++.- + .|...+|.+..+--.+..+..+....|.+++|++.|+.|-+ ...+.
T Consensus 25 Ps~I~slA~s~kS~~lAvsR-t---------~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~---g~sg~ 91 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSR-T---------DGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSS---GLSGS 91 (691)
T ss_pred ccceEEEEEeccCCceeeec-c---------CCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEee---cCCce
Confidence 57888999999888877641 1 15566787766554456666677889999999976665544 45789
Q ss_pred EEEEeC-CCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeee--C--CCeeeEEEccCCCE
Q 020756 108 ATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR--A--ECSVTSEWSPDGRY 180 (321)
Q Consensus 108 i~i~d~-~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~--~--~~~~~~~wSpdG~~ 180 (321)
|+-||+ ..+++..+ -.+.+.+++-+|.+..+++++ .+|.+++++...++...... . ..+.+++|+|+|.+
T Consensus 92 i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igc---ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~ 168 (691)
T KOG2048|consen 92 ITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGC---DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTK 168 (691)
T ss_pred EEEEecccCceeEEecCCCcceeEEEeCCccceEEeec---CCceEEEEecCCceEEEEeecccccceEEEEEecCCccE
Confidence 999998 56777776 467889999999999999998 88988888877665543321 1 36888999999999
Q ss_pred EEEEEcCCceeecCcEEEEeec-CceeE
Q 020756 181 FMTATTAPRLQIDNGIKIFHHN-GSLFF 207 (321)
Q Consensus 181 l~t~~s~~rl~~d~~v~iw~~~-g~~l~ 207 (321)
|+.|+. |+-|++||.. |..++
T Consensus 169 i~~Gs~------Dg~Iriwd~~~~~t~~ 190 (691)
T KOG2048|consen 169 IAGGSI------DGVIRIWDVKSGQTLH 190 (691)
T ss_pred EEeccc------CceEEEEEcCCCceEE
Confidence 999995 9999999984 44443
No 197
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.98 E-value=3.5e-08 Score=91.31 Aligned_cols=179 Identities=13% Similarity=0.176 Sum_probs=130.4
Q ss_pred ceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 020756 32 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF 111 (321)
Q Consensus 32 ~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~ 111 (321)
..|.||..-+.+|+..+. ..++.+|++..+.-....-.|.+.|+.++|+|.--.+.+. |++|+++.|+
T Consensus 247 l~Ls~n~~~~nVLaSgsa-----------D~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLs-Gs~D~~V~l~ 314 (463)
T KOG0270|consen 247 LALSWNRNFRNVLASGSA-----------DKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLS-GSYDGTVALK 314 (463)
T ss_pred HHHHhccccceeEEecCC-----------CceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEe-ccccceEEee
Confidence 478999998998886432 2236677776664444433588999999999976655554 8899999999
Q ss_pred eCCC--ceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC-eEEEeeeCC--CeeeEEEccCCCEEEEEE
Q 020756 112 NKKC--RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTAT 185 (321)
Q Consensus 112 d~~~--~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~-~~i~~~~~~--~~~~~~wSpdG~~l~t~~ 185 (321)
|.+. +.-..+ -.+.+..+.|.|+....++++. .+|.|+-+|+++. +++-++.+| .|+.+++++.-..+++..
T Consensus 315 D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t--ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~ 392 (463)
T KOG0270|consen 315 DCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST--DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTA 392 (463)
T ss_pred eccCccccCceEEeccceEEEEecCCCceeEEEec--CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeec
Confidence 9973 111122 3678899999999988877772 5799999998865 888888887 799999998755554444
Q ss_pred cCCceeecCcEEEEeecC---ceeEE--eccCceEEEEEecCCCCCCCC
Q 020756 186 TAPRLQIDNGIKIFHHNG---SLFFK--KMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 186 s~~rl~~d~~v~iw~~~g---~~l~~--~~~~~~~~~~w~P~~~~~~~~ 229 (321)
+ .|..++||++.+ ..++. .....+..++..|+-+.++..
T Consensus 393 s-----~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~ 436 (463)
T KOG0270|consen 393 S-----TDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAF 436 (463)
T ss_pred c-----ccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEe
Confidence 4 399999999954 33322 233567778888877777654
No 198
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.97 E-value=1.8e-08 Score=90.25 Aligned_cols=115 Identities=15% Similarity=0.311 Sum_probs=92.1
Q ss_pred CCCCCeEEEEECcC---CCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCC-eEEEEccCCCCCcEEE
Q 020756 80 RKEGPVHDVQWSYS---GSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAF 152 (321)
Q Consensus 80 ~~~~~v~~~~wsP~---g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~-~l~~~g~~n~~g~i~i 152 (321)
++++..+.++|+-| |+-|.++.| .-|.|+|.|+... ....+ |.+.+|.+.++|+-. +|++++ .|..|++
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G-~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~S---kD~svRl 162 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGG-YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSAS---KDHSVRL 162 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeec-ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEec---CCceEEE
Confidence 46788899999754 555666655 4579999998443 33333 778899999999874 555566 8999999
Q ss_pred EECCCCeEEEeeeC---C--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc
Q 020756 153 WDYVDGKQLGTTRA---E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 204 (321)
Q Consensus 153 wD~~~~~~i~~~~~---~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~ 204 (321)
||+++..|+..+.+ | .+.++.||+||.+|++++ .|..+++|+++-.
T Consensus 163 wnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScG------mDhslk~W~l~~~ 213 (385)
T KOG1034|consen 163 WNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCG------MDHSLKLWRLNVK 213 (385)
T ss_pred EeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccC------CcceEEEEecChh
Confidence 99999999988764 4 788999999999999999 5999999998743
No 199
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.96 E-value=1.2e-08 Score=98.80 Aligned_cols=175 Identities=16% Similarity=0.176 Sum_probs=115.7
Q ss_pred ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee--eecCCC
Q 020756 5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL--VPLRKE 82 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~--v~l~~~ 82 (321)
+.|+||+..+. ..+....++.-.+.+|.|||||++||... .|++-. ||...-+-..+.. ..-.|.
T Consensus 552 AvI~lw~t~~W---~~~~~L~~HsLTVT~l~FSpdg~~LLsvs---RDRt~s-------l~~~~~~~~~e~~fa~~k~Ht 618 (764)
T KOG1063|consen 552 AVIRLWNTANW---LQVQELEGHSLTVTRLAFSPDGRYLLSVS---RDRTVS-------LYEVQEDIKDEFRFACLKAHT 618 (764)
T ss_pred eEEEEEeccch---hhhheecccceEEEEEEECCCCcEEEEee---cCceEE-------eeeeecccchhhhhccccccc
Confidence 57999999984 44556677777899999999999998864 333322 3333221111111 122478
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc---eeEE---e-CCcCeeeEEEcCCC----CeEEEEccCCCCCcEE
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---PILE---L-GSGPYNTVRWNPKG----KFLCLAGFGNLPGDMA 151 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~---~~~~---~-~~~~~~~~~~sPdG----~~l~~~g~~n~~g~i~ 151 (321)
..|-++.|+|++.+|+++ ..|.++.+|..... -+.. + ....+..++|.|-- ..++..|+ ..|.|.
T Consensus 619 RIIWdcsW~pde~~FaTa--SRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGl--e~GeI~ 694 (764)
T KOG1063|consen 619 RIIWDCSWSPDEKYFATA--SRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGL--EKGEIV 694 (764)
T ss_pred eEEEEcccCcccceeEEe--cCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEe--cccEEE
Confidence 889999999999999996 77999999976322 2222 2 46778888888742 23666664 459999
Q ss_pred EEECCCC---------eEEEeee---CC--CeeeEEEccC----------CCEEEEEEcCCceeecCcEEEEeec
Q 020756 152 FWDYVDG---------KQLGTTR---AE--CSVTSEWSPD----------GRYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 152 iwD~~~~---------~~i~~~~---~~--~~~~~~wSpd----------G~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
+|..... ....... .+ .+..+.|+|. ..+|+.++. |..++|++++
T Consensus 695 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~------D~~vri~nv~ 763 (764)
T KOG1063|consen 695 LWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGD------DESVRIFNVD 763 (764)
T ss_pred EEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecc------cceeEEeecc
Confidence 9985411 1111111 11 5677999975 445678874 9999998864
No 200
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.95 E-value=3.3e-09 Score=100.49 Aligned_cols=150 Identities=17% Similarity=0.248 Sum_probs=111.2
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEEeC-CCceeEEeCCcCeeeEEEcCCCCeEEEEccCC--------CCCcEEEEEC
Q 020756 85 VHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILELGSGPYNTVRWNPKGKFLCLAGFGN--------LPGDMAFWDY 155 (321)
Q Consensus 85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n--------~~g~i~iwD~ 155 (321)
-+-+.|||.|.+|++.+- .-|.+|-- ....++.|.+..+.-+.|||+.++|++-+..- ....|.|||+
T Consensus 213 etyv~wSP~GTYL~t~Hk---~GI~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHK---QGIALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCceEEEEEec---cceeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 456899999999999753 35889965 34567778778899999999999999976521 2358999999
Q ss_pred CCCeEEEeeeCC-----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee---EEeccCceEEEEEecCCCCCC
Q 020756 156 VDGKQLGTTRAE-----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF---FKKMFDKLFQAEWKPVSPDKF 227 (321)
Q Consensus 156 ~~~~~i~~~~~~-----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l---~~~~~~~~~~~~w~P~~~~~~ 227 (321)
.+|.+...|... .-.-+.||.|++|+|.-+ .++|.||+...-.+ .....+.+.+++|+|.+.-|.
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~-------~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llA 362 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMT-------GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLA 362 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEec-------cceEEEEecCceeeecccccCCccccCcccCCCcceEE
Confidence 999888877652 112379999999999988 69999999754222 223567899999999865443
Q ss_pred ---CCcchhhhccccccccc
Q 020756 228 ---GDISELIKSVGSLKVAE 244 (321)
Q Consensus 228 ---~~~~~~~~~~~~~~~~~ 244 (321)
+..++++..+.++.+|.
T Consensus 363 Ywtpe~~~~parvtL~evPs 382 (698)
T KOG2314|consen 363 YWTPETNNIPARVTLMEVPS 382 (698)
T ss_pred EEcccccCCcceEEEEecCc
Confidence 33456666666655544
No 201
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.95 E-value=1.9e-08 Score=97.95 Aligned_cols=202 Identities=12% Similarity=0.174 Sum_probs=149.5
Q ss_pred ceEEEEEcCCcCCCCceeeeecccCccceEEeCC--CCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC-C
Q 020756 5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNR--GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-K 81 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp--~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~-~ 81 (321)
|.+|||++-+ -..+...-.+..++..+.+|. -+..||..++.| + -|+.+++.....-..+++ |
T Consensus 481 GnlrVy~Lq~---l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrd-----R------lIHV~Dv~rny~l~qtld~H 546 (1080)
T KOG1408|consen 481 GNLRVYDLQE---LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRD-----R------LIHVYDVKRNYDLVQTLDGH 546 (1080)
T ss_pred CceEEEEehh---hhhhhheecccceeEEEeecCchhhhHhhhhccCC-----c------eEEEEecccccchhhhhccc
Confidence 6899999998 466666777778888888874 355565544322 1 266777777665555555 7
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-----Cce----eEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEE
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-----CRP----ILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF 152 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-----~~~----~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~i 152 (321)
...|+++.|.-.|-.+-.+.-..| +..+|+.. +.. ..++.......+...|.-+++++++ .|.+|.|
T Consensus 547 SssITsvKFa~~gln~~MiscGAD-ksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c---QDrniri 622 (1080)
T KOG1408|consen 547 SSSITSVKFACNGLNRKMISCGAD-KSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC---QDRNIRI 622 (1080)
T ss_pred ccceeEEEEeecCCceEEEeccCc-hhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe---cccceEE
Confidence 899999999888744333322334 34455542 111 1223566788899999999999999 9999999
Q ss_pred EECCCCeEEEeeeCC-----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee--EEeccCceEEEEEecCCC
Q 020756 153 WDYVDGKQLGTTRAE-----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF--FKKMFDKLFQAEWKPVSP 224 (321)
Q Consensus 153 wD~~~~~~i~~~~~~-----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l--~~~~~~~~~~~~w~P~~~ 224 (321)
||+.+++.+..|++. ...-+...|.|-||++..+ |.++.++|+ +|+++ ..+|-.-|..+.|.+|..
T Consensus 623 f~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScs------dktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCk 696 (1080)
T KOG1408|consen 623 FDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCS------DKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCK 696 (1080)
T ss_pred EeccccceeeeecccccCCCceEEEEECCCccEEEEeec------CCceEEEEeccchhhhhhcCcchheeeeeecccch
Confidence 999999999999874 4556889999999999997 999999998 78887 446777888899999988
Q ss_pred CCCCCc
Q 020756 225 DKFGDI 230 (321)
Q Consensus 225 ~~~~~~ 230 (321)
.+++..
T Consensus 697 HlISvs 702 (1080)
T KOG1408|consen 697 HLISVS 702 (1080)
T ss_pred hheeec
Confidence 888653
No 202
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=98.94 E-value=2.2e-09 Score=96.07 Aligned_cols=141 Identities=11% Similarity=0.255 Sum_probs=94.8
Q ss_pred ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC-CCCCeEEEEECcCCCEEEEEEccCC
Q 020756 27 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVVYGFMP 105 (321)
Q Consensus 27 f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~-~~~~v~~~~wsP~g~~l~~~~g~~~ 105 (321)
|+....-..+||+|+|++.+... .|..-+.+. -..+++- .-+.|.-+.|+-|..++..+ .+.+
T Consensus 7 fk~~~~~c~fSp~g~yiAs~~~y-------------rlviRd~~t--lq~~qlf~cldki~yieW~ads~~ilC~-~yk~ 70 (447)
T KOG4497|consen 7 FKSLNPFCSFSPCGNYIASLSRY-------------RLVIRDSET--LQLHQLFLCLDKIVYIEWKADSCHILCV-AYKD 70 (447)
T ss_pred HHhcCCceeECCCCCeeeeeeee-------------EEEEeccch--hhHHHHHHHHHHhhheeeeccceeeeee-eecc
Confidence 44444456899999999997421 122111111 1111111 13556778999887755443 4667
Q ss_pred CeEEEEeCCCceeE-Ee--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEee-eCCCeeeEEEccCCCEE
Q 020756 106 ASATIFNKKCRPIL-EL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT-RAECSVTSEWSPDGRYF 181 (321)
Q Consensus 106 ~~i~i~d~~~~~~~-~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~-~~~~~~~~~wSpdG~~l 181 (321)
+.+.+|++..-... .+ +..+...+.|||||+.|+..+ ..+-.|.+|.+.+.+..... ..+++-.++|.|||+|.
T Consensus 71 ~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~ts--eF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ 148 (447)
T KOG4497|consen 71 PKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTS--EFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFC 148 (447)
T ss_pred ceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeee--cceeEEEEEEeccceeEEecccccCceeEEECCCCcee
Confidence 89999999654433 33 678899999999999888866 36789999999877654432 22377789999999998
Q ss_pred EEEE
Q 020756 182 MTAT 185 (321)
Q Consensus 182 ~t~~ 185 (321)
+..+
T Consensus 149 ai~s 152 (447)
T KOG4497|consen 149 AILS 152 (447)
T ss_pred eeee
Confidence 8776
No 203
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=98.93 E-value=1.2e-08 Score=90.20 Aligned_cols=145 Identities=17% Similarity=0.197 Sum_probs=110.3
Q ss_pred eeeecCCCCCeEEEEECcC-CCEEEEEEccCCCeEEEEeCCCc-------ee----E-------EeCCcCeeeEEEcCCC
Q 020756 75 GLVPLRKEGPVHDVQWSYS-GSEFAVVYGFMPASATIFNKKCR-------PI----L-------ELGSGPYNTVRWNPKG 135 (321)
Q Consensus 75 ~~v~l~~~~~v~~~~wsP~-g~~l~~~~g~~~~~i~i~d~~~~-------~~----~-------~~~~~~~~~~~~sPdG 135 (321)
+.+...|.|.|+.++..+. |++++. |..|+.|.+||++.. .+ . ..|.-.+.++.|-|..
T Consensus 36 ~d~~r~HgGsvNsL~id~tegrymlS--Ggadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~D 113 (397)
T KOG4283|consen 36 KDFVRPHGGSVNSLQIDLTEGRYMLS--GGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPID 113 (397)
T ss_pred cceeccCCCccceeeeccccceEEee--cCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeec
Confidence 4444568899999999985 656555 778999999998421 11 1 1144567889999977
Q ss_pred CeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-CeeeEEEccC---CCEEEEEEcCCceeecCcEEEEeec-Ccee--EE
Q 020756 136 KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPD---GRYFMTATTAPRLQIDNGIKIFHHN-GSLF--FK 208 (321)
Q Consensus 136 ~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSpd---G~~l~t~~s~~rl~~d~~v~iw~~~-g~~l--~~ 208 (321)
.=+++++ +.|.++++||.++.+....|.-+ .+..-+|||- -.+||+++ .+-.|++.|+. |..- ..
T Consensus 114 tGmFtss--SFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gt------r~~~VrLCDi~SGs~sH~Ls 185 (397)
T KOG4283|consen 114 TGMFTSS--SFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGT------RDVQVRLCDIASGSFSHTLS 185 (397)
T ss_pred Cceeecc--cccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEec------CCCcEEEEeccCCcceeeec
Confidence 7666554 37899999999999888888776 7888899993 45666776 48899999994 5433 67
Q ss_pred eccCceEEEEEecCCCCCCCC
Q 020756 209 KMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 209 ~~~~~~~~~~w~P~~~~~~~~ 229 (321)
+|.++|..+.|+|...+++..
T Consensus 186 GHr~~vlaV~Wsp~~e~vLat 206 (397)
T KOG4283|consen 186 GHRDGVLAVEWSPSSEWVLAT 206 (397)
T ss_pred cccCceEEEEeccCceeEEEe
Confidence 899999999999999888754
No 204
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.93 E-value=3.4e-08 Score=94.70 Aligned_cols=146 Identities=17% Similarity=0.273 Sum_probs=102.7
Q ss_pred ccceEEeCCCCCeeEEEEEecccCCCceeecc-eeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC--
Q 020756 30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGE-SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA-- 106 (321)
Q Consensus 30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~-~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~-- 106 (321)
......|+|+|..+.++.... +. ..+|+++++.+....+ +...+.-...+|||||+.++++... ++
T Consensus 194 ~~~~p~ws~~~~~~~y~~f~~---------~~~~~i~~~~l~~g~~~~i-~~~~g~~~~P~fspDG~~l~f~~~r-dg~~ 262 (425)
T COG0823 194 LILTPAWSPDGKKLAYVSFEL---------GGCPRIYYLDLNTGKRPVI-LNFNGNNGAPAFSPDGSKLAFSSSR-DGSP 262 (425)
T ss_pred ceeccccCcCCCceEEEEEec---------CCCceEEEEeccCCcccee-eccCCccCCccCCCCCCEEEEEECC-CCCc
Confidence 455678999999999874321 22 3578888866633333 3456777789999999999998533 34
Q ss_pred eEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE-EEeeeCCCeeeEEEccCCCEEEE
Q 020756 107 SATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ-LGTTRAECSVTSEWSPDGRYFMT 183 (321)
Q Consensus 107 ~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~-i~~~~~~~~~~~~wSpdG~~l~t 183 (321)
.|.++|+.++.+..+ ..+.-....|||||+.|++.+-......|+++|++.... ..++....-....|||||++|+.
T Consensus 263 ~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 263 DIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred cEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEE
Confidence 778889987766666 233334689999999999987544455888889876643 22233333337899999999999
Q ss_pred EEc
Q 020756 184 ATT 186 (321)
Q Consensus 184 ~~s 186 (321)
.+.
T Consensus 343 ~~~ 345 (425)
T COG0823 343 ESS 345 (425)
T ss_pred Eec
Confidence 883
No 205
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=98.92 E-value=7.5e-08 Score=93.21 Aligned_cols=176 Identities=15% Similarity=0.194 Sum_probs=126.5
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC-ceeeeecC
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPLR 80 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-~~~~v~l~ 80 (321)
|.-|.|.-|++-+ .+++....-+....-.+.-+|.++.+++.+.. | -|++++..-+ -+....+.
T Consensus 87 g~sg~i~EwDl~~---lk~~~~~d~~gg~IWsiai~p~~~~l~Igcdd----------G--vl~~~s~~p~~I~~~r~l~ 151 (691)
T KOG2048|consen 87 GLSGSITEWDLHT---LKQKYNIDSNGGAIWSIAINPENTILAIGCDD----------G--VLYDFSIGPDKITYKRSLM 151 (691)
T ss_pred cCCceEEEEeccc---CceeEEecCCCcceeEEEeCCccceEEeecCC----------c--eEEEEecCCceEEEEeecc
Confidence 6778999999998 67777777777778888889999888886421 2 2455444222 12222233
Q ss_pred -CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeE--Ee---C-CcCeeeEEEcC---CCCeEEEEccCCCCCc
Q 020756 81 -KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPIL--EL---G-SGPYNTVRWNP---KGKFLCLAGFGNLPGD 149 (321)
Q Consensus 81 -~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~--~~---~-~~~~~~~~~sP---dG~~l~~~g~~n~~g~ 149 (321)
.++.|.++.|+|++..++. |+.|+.|.+||++. ..++ +. . ...-.++.||= ....|+++. ..|.
T Consensus 152 rq~sRvLslsw~~~~~~i~~--Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgD---S~G~ 226 (691)
T KOG2048|consen 152 RQKSRVLSLSWNPTGTKIAG--GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGD---SAGT 226 (691)
T ss_pred cccceEEEEEecCCccEEEe--cccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEec---CCce
Confidence 3589999999999998888 89999999999953 3333 21 1 11234555552 234667766 7899
Q ss_pred EEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756 150 MAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 203 (321)
Q Consensus 150 i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g 203 (321)
|.|||...+.++..+..| ++.+++-++++.++.+++ +|..+..|..++
T Consensus 227 V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaG------vd~~ii~~~~~~ 276 (691)
T KOG2048|consen 227 VTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAG------VDPKIIQYSLTT 276 (691)
T ss_pred EEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEcc------CCCceEEEEecC
Confidence 999999999999888876 889999999999999999 577766666543
No 206
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.91 E-value=1.2e-08 Score=98.85 Aligned_cols=134 Identities=19% Similarity=0.277 Sum_probs=100.9
Q ss_pred CCCCCeEEEEECcCCCEEEEEEcc---CCCeEEEEeCCC-cee--EEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEE
Q 020756 80 RKEGPVHDVQWSYSGSEFAVVYGF---MPASATIFNKKC-RPI--LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW 153 (321)
Q Consensus 80 ~~~~~v~~~~wsP~g~~l~~~~g~---~~~~i~i~d~~~-~~~--~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw 153 (321)
.|...|++++.||+|+.+|.+.-. .-.-|.||+... ..+ ..+|.-.|..+.|||||++|++.+ .|.++.+|
T Consensus 523 GHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvs---RDRt~sl~ 599 (764)
T KOG1063|consen 523 GHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVS---RDRTVSLY 599 (764)
T ss_pred cCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEee---cCceEEee
Confidence 367789999999999999986432 224789999853 233 344888999999999999999999 99999999
Q ss_pred ECCCCe----EEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc---eeE----EeccCceEEEEEe
Q 020756 154 DYVDGK----QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS---LFF----KKMFDKLFQAEWK 220 (321)
Q Consensus 154 D~~~~~----~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~---~l~----~~~~~~~~~~~w~ 220 (321)
...... .....+.| -|.+++|+||+.+|+|++ .|..|++|..... .+. ......|..++|.
T Consensus 600 ~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaS------RDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~ 673 (764)
T KOG1063|consen 600 EVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATAS------RDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYL 673 (764)
T ss_pred eeecccchhhhhccccccceEEEEcccCcccceeEEec------CCceEEEEeccCchhhhhhhhchhccCCceeeEEee
Confidence 875431 12234455 577899999999999999 5999999998433 221 1233478888888
Q ss_pred cC
Q 020756 221 PV 222 (321)
Q Consensus 221 P~ 222 (321)
|-
T Consensus 674 ~~ 675 (764)
T KOG1063|consen 674 PV 675 (764)
T ss_pred cc
Confidence 73
No 207
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.91 E-value=1e-08 Score=98.53 Aligned_cols=125 Identities=20% Similarity=0.295 Sum_probs=94.7
Q ss_pred EEEcCCCceeeeec--CCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeCCCc-------eeEEe--CCcCeeeEEEcC
Q 020756 66 YLTTDGTHEGLVPL--RKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKCR-------PILEL--GSGPYNTVRWNP 133 (321)
Q Consensus 66 ~l~~~g~~~~~v~l--~~~~~v~~~~wsP~g~-~l~~~~g~~~~~i~i~d~~~~-------~~~~~--~~~~~~~~~~sP 133 (321)
-++..|...+.+.+ .|.+.|.|+.|+|..+ .|+++ ..|..++||.+-.. +-..+ ++-.+.++.|+|
T Consensus 61 Pl~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~--S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHp 138 (1012)
T KOG1445|consen 61 PLTAKGRRTRDIGILAAHGDQVTDLGFSPFADELLATC--SRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHP 138 (1012)
T ss_pred eccccCccccccceeecccceeeccCccccchhhhhcc--cCCCeeEEEecCCCcccccCCcceeecCCceEEEEeeccc
Confidence 33444444443332 3788999999999665 45554 67889999988421 11223 355678999999
Q ss_pred CCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756 134 KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 201 (321)
Q Consensus 134 dG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~ 201 (321)
...-|+..+ ..|.++|||+.+++.+..+.+| .+-+..||-||..|+++. .|..|+|||-
T Consensus 139 TaDgil~s~---a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatsc------KdkqirifDP 199 (1012)
T KOG1445|consen 139 TADGILASG---AHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSC------KDKQIRIFDP 199 (1012)
T ss_pred CcCceEEec---cCceEEEEEcccCceeecccCCchhhhccccccCCceEeeec------CCcceEEeCC
Confidence 887777777 7799999999999988888877 566799999999999997 5999999986
No 208
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=98.91 E-value=1.2e-06 Score=80.52 Aligned_cols=193 Identities=13% Similarity=0.237 Sum_probs=126.3
Q ss_pred CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC
Q 020756 4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG 83 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~ 83 (321)
.+.+.+|++... ...+............+.|+|++..++... . . ...+.+++............|..
T Consensus 133 d~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~--------~--~~~~~~~~~~~~~~~~~~~~~~~ 199 (466)
T COG2319 133 DGTVKLWDLSTP--GKLIRTLEGHSESVTSLAFSPDGKLLASGS-S--------L--DGTIKLWDLRTGKPLSTLAGHTD 199 (466)
T ss_pred CccEEEEEecCC--CeEEEEEecCcccEEEEEECCCCCEEEecC-C--------C--CCceEEEEcCCCceEEeeccCCC
Confidence 668899998761 234444444455555799999999554431 0 0 11244555443222222223789
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeE-Ee--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756 84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PIL-EL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 159 (321)
Q Consensus 84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~-~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~ 159 (321)
.|.+++|+|++..+++. ...++.+.+||.... .+. .+ +.... ...|+|++.+++.++ .++.+.+||+....
T Consensus 200 ~v~~~~~~~~~~~~~~~-~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~d~~~~~~~~~~~~ 274 (466)
T COG2319 200 PVSSLAFSPDGGLLIAS-GSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGS---SDGTIRLWDLRSSS 274 (466)
T ss_pred ceEEEEEcCCcceEEEE-ecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEec---CCCcEEEeeecCCC
Confidence 99999999999833332 466888999988633 333 24 33333 338999998888777 88999999998665
Q ss_pred E-EEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee---EE--eccCceEEEEEec
Q 020756 160 Q-LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF---FK--KMFDKLFQAEWKP 221 (321)
Q Consensus 160 ~-i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l---~~--~~~~~~~~~~w~P 221 (321)
. +..+..| .+..+.|+|++..+++++. |+.+.+|+...... .. .+...+..+.| +
T Consensus 275 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 337 (466)
T COG2319 275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSS------DGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-S 337 (466)
T ss_pred cEEEEEecCCccEEEEEECCCCCEEEEeeC------CCcEEEEEcCCCceEEEeeecccCCceEEEEE-C
Confidence 3 4443333 7788899999999999663 77799998865433 11 33345888888 5
No 209
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=98.91 E-value=6.6e-08 Score=85.44 Aligned_cols=175 Identities=14% Similarity=0.299 Sum_probs=123.0
Q ss_pred CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec-C-C
Q 020756 4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-R-K 81 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l-~-~ 81 (321)
+-...||++.....+..-.|.-.+.-++.++.|...|..+.+.+..| |...+|.+....- ..++-- . .
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaD---------GSvRmFDLR~leH-STIIYE~p~~ 241 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGAD---------GSVRMFDLRSLEH-STIIYEDPSP 241 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCC---------CcEEEEEeccccc-ceEEecCCCC
Confidence 45678999998322334677777888999999999888887765433 5555665543222 222211 1 2
Q ss_pred CCCeEEEEECcCCC-EEEEEEccCCCeEEEEeCC--CceeEEe--CCcCeeeEEEcCCC-CeEEEEccCCCCCcEEEEEC
Q 020756 82 EGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKK--CRPILEL--GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDY 155 (321)
Q Consensus 82 ~~~v~~~~wsP~g~-~l~~~~g~~~~~i~i~d~~--~~~~~~~--~~~~~~~~~~sPdG-~~l~~~g~~n~~g~i~iwD~ 155 (321)
..+...++|++..- ++|+. .-...+|.|.|++ +.++.++ |.+.||.++|.|+. ..|+++| .|.+..+||+
T Consensus 242 ~~pLlRLswnkqDpnymATf-~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaG---DD~qaliWDl 317 (364)
T KOG0290|consen 242 STPLLRLSWNKQDPNYMATF-AMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAG---DDCQALIWDL 317 (364)
T ss_pred CCcceeeccCcCCchHHhhh-hcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecC---CcceEEEEec
Confidence 56788899998544 66665 2223489999986 5677777 88999999999975 5888898 9999999999
Q ss_pred CCCe------EEEee-eCCCeeeEEEcc-CCCEEEEEEcCCceeecCcEEEE
Q 020756 156 VDGK------QLGTT-RAECSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIF 199 (321)
Q Consensus 156 ~~~~------~i~~~-~~~~~~~~~wSp-dG~~l~t~~s~~rl~~d~~v~iw 199 (321)
.+.- .+... ..+.+.++.|++ .+.+|+.+. ++.+.|-
T Consensus 318 ~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~-------~kkleiL 362 (364)
T KOG0290|consen 318 QQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF-------GKKLEIL 362 (364)
T ss_pred ccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe-------cCeeeEE
Confidence 7542 12222 234899999997 588888888 6776654
No 210
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=1.4e-07 Score=83.85 Aligned_cols=193 Identities=9% Similarity=0.064 Sum_probs=117.7
Q ss_pred CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC
Q 020756 4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG 83 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~ 83 (321)
+|++++|+++. . .+..+--.+....+..|-++.+.+... -+.++-.++++++.+.++ ..|.+
T Consensus 34 DgslrlYdv~~---~-~l~~~~~~~~plL~c~F~d~~~~~~G~-------------~dg~vr~~Dln~~~~~~i-gth~~ 95 (323)
T KOG1036|consen 34 DGSLRLYDVPA---N-SLKLKFKHGAPLLDCAFADESTIVTGG-------------LDGQVRRYDLNTGNEDQI-GTHDE 95 (323)
T ss_pred cCcEEEEeccc---h-hhhhheecCCceeeeeccCCceEEEec-------------cCceEEEEEecCCcceee-ccCCC
Confidence 47788888887 2 222222233444555555533322111 112345556666644333 36899
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe--
Q 020756 84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK-- 159 (321)
Q Consensus 84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~-- 159 (321)
+|.++..++--..++. |.-|.+|.+||.+.. ....+ ....|.++..+ |+.|++++ .+..|.+||+++..
T Consensus 96 ~i~ci~~~~~~~~vIs--gsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~--g~~LvVg~---~~r~v~iyDLRn~~~~ 168 (323)
T KOG1036|consen 96 GIRCIEYSYEVGCVIS--GSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVS--GNRLVVGT---SDRKVLIYDLRNLDEP 168 (323)
T ss_pred ceEEEEeeccCCeEEE--cccCccEEEEeccccccccccccCceEEEEecc--CCEEEEee---cCceEEEEEcccccch
Confidence 9999999986655555 788999999998742 22233 12345555443 66677766 66677777776521
Q ss_pred -------------EE---------------------------------EeeeCC-----------CeeeEEEccCCCEEE
Q 020756 160 -------------QL---------------------------------GTTRAE-----------CSVTSEWSPDGRYFM 182 (321)
Q Consensus 160 -------------~i---------------------------------~~~~~~-----------~~~~~~wSpdG~~l~ 182 (321)
++ ..|..| .+..++|+|--.+|+
T Consensus 169 ~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfa 248 (323)
T KOG1036|consen 169 FQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFA 248 (323)
T ss_pred hhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEE
Confidence 11 112222 345589999999999
Q ss_pred EEEcCCceeecCcEEEEeecCc-eeEEec--cCceEEEEEecCCCCCC
Q 020756 183 TATTAPRLQIDNGIKIFHHNGS-LFFKKM--FDKLFQAEWKPVSPDKF 227 (321)
Q Consensus 183 t~~s~~rl~~d~~v~iw~~~g~-~l~~~~--~~~~~~~~w~P~~~~~~ 227 (321)
|+++ |+-|-+||...+ .+...+ ...+..++++-++..+.
T Consensus 249 TgGs------DG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LA 290 (323)
T KOG1036|consen 249 TGGS------DGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLA 290 (323)
T ss_pred ecCC------CceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEE
Confidence 9996 999999998543 333322 24588888887776554
No 211
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.89 E-value=5.3e-07 Score=81.95 Aligned_cols=181 Identities=16% Similarity=0.261 Sum_probs=118.0
Q ss_pred cceEEeCCCCCeeEEEEEecccCCCcee-ecceeEEEEEcCCCceeee-ecCCCCC----------eEEEEECcCCCEEE
Q 020756 31 TVQLNWNRGSTGLLAVAQSDVDKTNQSY-YGESKLNYLTTDGTHEGLV-PLRKEGP----------VHDVQWSYSGSEFA 98 (321)
Q Consensus 31 ~~~~~Wsp~G~~l~~~~~~d~d~t~~s~-~g~~~l~~l~~~g~~~~~v-~l~~~~~----------v~~~~wsP~g~~l~ 98 (321)
.|.+..+++|++|++. .| .|...++-+..+|.-...+ .+.|.++ +|...+.|++++++
T Consensus 91 p~yvsvd~~g~~vf~A----------nY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~ 160 (346)
T COG2706 91 PCYVSVDEDGRFVFVA----------NYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLV 160 (346)
T ss_pred CeEEEECCCCCEEEEE----------EccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEE
Confidence 3667777777776653 12 2555566666666433322 2335555 99999999999999
Q ss_pred EEEccCCCeEEEEeCCCceeEE-----e-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC----eEEEeee---
Q 020756 99 VVYGFMPASATIFNKKCRPILE-----L-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTR--- 165 (321)
Q Consensus 99 ~~~g~~~~~i~i~d~~~~~~~~-----~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~----~~i~~~~--- 165 (321)
++.-..| ++.+|++....+.. + ....-..+.|+|+|++..+.. .++++|.+|..+.. +.+..+.
T Consensus 161 v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~--EL~stV~v~~y~~~~g~~~~lQ~i~tlP 237 (346)
T COG2706 161 VPDLGTD-RIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVN--ELNSTVDVLEYNPAVGKFEELQTIDTLP 237 (346)
T ss_pred EeecCCc-eEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEe--ccCCEEEEEEEcCCCceEEEeeeeccCc
Confidence 9854434 79999986322221 1 223345789999999998876 36799999998763 2333221
Q ss_pred C----C-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec---CceeEEeccC----ceEEEEEecCCCCCCCC
Q 020756 166 A----E-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN---GSLFFKKMFD----KLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 166 ~----~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~---g~~l~~~~~~----~~~~~~w~P~~~~~~~~ 229 (321)
. . ....+..||||+||.++. |..+.|.+|.++ |.+-+..... .-.+|.+.|....++..
T Consensus 238 ~dF~g~~~~aaIhis~dGrFLYasN-----Rg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 238 EDFTGTNWAAAIHISPDGRFLYASN-----RGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred cccCCCCceeEEEECCCCCEEEEec-----CCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 1 1 456699999999998877 357788888883 3333332221 24678888887777654
No 212
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.88 E-value=1.1e-07 Score=91.86 Aligned_cols=177 Identities=14% Similarity=0.155 Sum_probs=122.4
Q ss_pred CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce---------
Q 020756 4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE--------- 74 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~--------- 74 (321)
+..|++|+.-... .-++....-++.-+.-+..-...+.+++...- ...|++++++.+.+
T Consensus 94 DtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~lvaSgGL-----------D~~IflWDin~~~~~l~~s~n~~ 161 (735)
T KOG0308|consen 94 DTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNELVASGGL-----------DRKIFLWDINTGTATLVASFNNV 161 (735)
T ss_pred CceEEEeecccCc-chhHhhhhcccchheeeeecccCceeEEecCC-----------CccEEEEEccCcchhhhhhcccc
Confidence 5578888887631 13333333344444444442333344333211 11355555553311
Q ss_pred --eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCc
Q 020756 75 --GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGD 149 (321)
Q Consensus 75 --~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~ 149 (321)
......+..+|++++-++.|. .++.|+..+.+++||-+. +.+..+ |...|..+..++||+.+++++ .||+
T Consensus 162 t~~sl~sG~k~siYSLA~N~t~t--~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~s---SDgt 236 (735)
T KOG0308|consen 162 TVNSLGSGPKDSIYSLAMNQTGT--IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSAS---SDGT 236 (735)
T ss_pred ccccCCCCCccceeeeecCCcce--EEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecC---CCce
Confidence 111124678999999999994 333477778999999864 455555 889999999999999999999 9999
Q ss_pred EEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756 150 MAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 203 (321)
Q Consensus 150 i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g 203 (321)
|++||+...+|+.++..| .+..+.-+|+-.++.+|+. |+.|..-|+..
T Consensus 237 IrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~r------d~~i~~Tdl~n 286 (735)
T KOG0308|consen 237 IRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGR------DGNIYRTDLRN 286 (735)
T ss_pred EEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCC------CCcEEecccCC
Confidence 999999999999998877 5777777899999999994 88888877743
No 213
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.88 E-value=7.9e-07 Score=84.10 Aligned_cols=176 Identities=16% Similarity=0.254 Sum_probs=114.7
Q ss_pred CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-eeeeecCCC
Q 020756 4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVPLRKE 82 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~~~v~l~~~ 82 (321)
.++|.|.+..+ .+.+........-...+.++|||+++++.. . . | .+..++..... ...+. -.
T Consensus 15 ~~~v~viD~~t---~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~-r----d-----g--~vsviD~~~~~~v~~i~--~G 77 (369)
T PF02239_consen 15 SGSVAVIDGAT---NKVVARIPTGGAPHAGLKFSPDGRYLYVAN-R----D-----G--TVSVIDLATGKVVATIK--VG 77 (369)
T ss_dssp GTEEEEEETTT----SEEEEEE-STTEEEEEE-TT-SSEEEEEE-T----T-----S--EEEEEETTSSSEEEEEE---S
T ss_pred CCEEEEEECCC---CeEEEEEcCCCCceeEEEecCCCCEEEEEc-C----C-----C--eEEEEECCcccEEEEEe--cC
Confidence 47889999888 677877766544456788999999988852 1 1 2 36777775542 23333 34
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEeC---------CcCeeeEEEcCCCCeEEEEccCCCCCcEEE
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELG---------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAF 152 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~~---------~~~~~~~~~sPdG~~l~~~g~~n~~g~i~i 152 (321)
....++++|+||+++++. ...++.+.++|.+ .+++..+. ...+..+.-+|....++++-. ..+.|.+
T Consensus 78 ~~~~~i~~s~DG~~~~v~-n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk--d~~~I~v 154 (369)
T PF02239_consen 78 GNPRGIAVSPDGKYVYVA-NYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK--DTGEIWV 154 (369)
T ss_dssp SEEEEEEE--TTTEEEEE-EEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET--TTTEEEE
T ss_pred CCcceEEEcCCCCEEEEE-ecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc--cCCeEEE
Confidence 567889999999999876 4568899999985 45666551 234567888999886666541 3489999
Q ss_pred EECCCCe--EEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc
Q 020756 153 WDYVDGK--QLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 204 (321)
Q Consensus 153 wD~~~~~--~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~ 204 (321)
.|..+.+ .+..+.. .......|+|||+|++.+.. ..+.+-++|....
T Consensus 155 Vdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~-----~sn~i~viD~~~~ 204 (369)
T PF02239_consen 155 VDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAAN-----GSNKIAVIDTKTG 204 (369)
T ss_dssp EETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEG-----GGTEEEEEETTTT
T ss_pred EEeccccccceeeecccccccccccCcccceeeeccc-----ccceeEEEeeccc
Confidence 9987653 2334433 36778999999999988875 4788889998543
No 214
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.86 E-value=3.7e-08 Score=87.93 Aligned_cols=137 Identities=17% Similarity=0.252 Sum_probs=106.5
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc----eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR----PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 155 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~----~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~ 155 (321)
.++|++-+|++|+..+|++ .....+.||...+. ..+++ |...++.+.|+|.++.|++++ .|.+-++|..
T Consensus 10 ~~pitchAwn~drt~iAv~--~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs---~drnayVw~~ 84 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVS--PNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCS---HDRNAYVWTQ 84 (361)
T ss_pred cCceeeeeecCCCceEEec--cCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEcc---CCCCcccccc
Confidence 4799999999999999995 55668999987543 44555 788999999999999999999 8889999988
Q ss_pred -CCC--eEEEee-eCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce-------eEEeccCceEEEEEecCC
Q 020756 156 -VDG--KQLGTT-RAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL-------FFKKMFDKLFQAEWKPVS 223 (321)
Q Consensus 156 -~~~--~~i~~~-~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~-------l~~~~~~~~~~~~w~P~~ 223 (321)
..+ +..-.+ ... ..+++.|||.+..||+++. -..+.||-|.++. +.+-..+.|..+.|+|.+
T Consensus 85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSg------ar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnn 158 (361)
T KOG1523|consen 85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSG------ARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNN 158 (361)
T ss_pred CCCCeeccceeEEEeccceeeEeecCcCceEEeccC------ccEEEEEEEecccceehhhhhCCccccceeeeeccCCc
Confidence 433 222222 222 7888999999999999995 6778899887653 233345678999999987
Q ss_pred CCCCCC
Q 020756 224 PDKFGD 229 (321)
Q Consensus 224 ~~~~~~ 229 (321)
..+...
T Consensus 159 VLlaaG 164 (361)
T KOG1523|consen 159 VLLAAG 164 (361)
T ss_pred ceeccc
Confidence 655543
No 215
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=98.84 E-value=1.7e-07 Score=91.09 Aligned_cols=189 Identities=12% Similarity=0.136 Sum_probs=134.3
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK 81 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~ 81 (321)
|++..+.||...+ ..|+....-++..+|.+.=.-+++ + +..+ -|+|-+ +|. .+. -......|
T Consensus 78 ~~D~~i~v~~~~~---~~P~~~LkgH~snVC~ls~~~~~~-~-iSgS--WD~Tak-------vW~---~~~-l~~~l~gH 139 (745)
T KOG0301|consen 78 GMDTTIIVFKLSQ---AEPLYTLKGHKSNVCSLSIGEDGT-L-ISGS--WDSTAK-------VWR---IGE-LVYSLQGH 139 (745)
T ss_pred cccceEEEEecCC---CCchhhhhccccceeeeecCCcCc-e-Eecc--cccceE-------Eec---chh-hhcccCCc
Confidence 5678888999988 788888888888888888777776 2 3211 233222 232 222 11112358
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 159 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~ 159 (321)
..+|-.+..-|.+ .+++ |+.|.+|++|.- +..+.+| |..-|..+++-|++.+ ++++ .||.|++||+ +++
T Consensus 140 ~asVWAv~~l~e~-~~vT--gsaDKtIklWk~-~~~l~tf~gHtD~VRgL~vl~~~~f-lScs---NDg~Ir~w~~-~ge 210 (745)
T KOG0301|consen 140 TASVWAVASLPEN-TYVT--GSADKTIKLWKG-GTLLKTFSGHTDCVRGLAVLDDSHF-LSCS---NDGSIRLWDL-DGE 210 (745)
T ss_pred chheeeeeecCCC-cEEe--ccCcceeeeccC-CchhhhhccchhheeeeEEecCCCe-Eeec---CCceEEEEec-cCc
Confidence 8999999999988 4444 688999999987 3344445 8888999999987654 6666 8999999999 788
Q ss_pred EEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe--ccCceEEEEEecCCC
Q 020756 160 QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MFDKLFQAEWKPVSP 224 (321)
Q Consensus 160 ~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~--~~~~~~~~~w~P~~~ 224 (321)
++....+| .+++++..+++..|++++ .|++++||+.. +++... ....+|++..=+.+.
T Consensus 211 ~l~~~~ghtn~vYsis~~~~~~~Ivs~g------EDrtlriW~~~-e~~q~I~lPttsiWsa~~L~NgD 272 (745)
T KOG0301|consen 211 VLLEMHGHTNFVYSISMALSDGLIVSTG------EDRTLRIWKKD-ECVQVITLPTTSIWSAKVLLNGD 272 (745)
T ss_pred eeeeeeccceEEEEEEecCCCCeEEEec------CCceEEEeecC-ceEEEEecCccceEEEEEeeCCC
Confidence 88887777 577788888899999999 59999999975 444222 223566665554443
No 216
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.84 E-value=7.7e-07 Score=93.09 Aligned_cols=136 Identities=15% Similarity=0.311 Sum_probs=92.3
Q ss_pred CeEEEEECcCCCEEEEEEc--cCC--CeEEEEeCCCceeEEeC--CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756 84 PVHDVQWSYSGSEFAVVYG--FMP--ASATIFNKKCRPILELG--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 157 (321)
Q Consensus 84 ~v~~~~wsP~g~~l~~~~g--~~~--~~i~i~d~~~~~~~~~~--~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~ 157 (321)
.-..++|-.||.+||+.+- ... +.++||+..|....+-. .+--..++|.|.|++|+.+-.......|-||.. +
T Consensus 211 ~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-N 289 (928)
T PF04762_consen 211 GRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-N 289 (928)
T ss_pred CceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-C
Confidence 4457999999999999753 222 58999999875333321 333457999999999999874334568888876 4
Q ss_pred CeEEEeeeC------CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee---EEecc---CceEEEEEecCCCC
Q 020756 158 GKQLGTTRA------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF---FKKMF---DKLFQAEWKPVSPD 225 (321)
Q Consensus 158 ~~~i~~~~~------~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l---~~~~~---~~~~~~~w~P~~~~ 225 (321)
|-.-..|.- ..+..+.|++|+..||... .+.|+||......- ....+ ..+..+.|+|..+.
T Consensus 290 GLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~-------~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~ 362 (928)
T PF04762_consen 290 GLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWL-------EDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPL 362 (928)
T ss_pred CcEeeeEecCCCCCCceeeEEEECCCCCEEEEEe-------cCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCC
Confidence 433222221 2678899999999999977 55599998765432 22222 23444899997665
Q ss_pred CC
Q 020756 226 KF 227 (321)
Q Consensus 226 ~~ 227 (321)
.+
T Consensus 363 ~L 364 (928)
T PF04762_consen 363 RL 364 (928)
T ss_pred EE
Confidence 33
No 217
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.83 E-value=5.6e-08 Score=90.38 Aligned_cols=189 Identities=10% Similarity=0.058 Sum_probs=128.0
Q ss_pred eeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcC------CCceeeee-cCCCCCeEEEEECcCC
Q 020756 22 ARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTD------GTHEGLVP-LRKEGPVHDVQWSYSG 94 (321)
Q Consensus 22 ~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~------g~~~~~v~-l~~~~~v~~~~wsP~g 94 (321)
....-++-..+.+..+|++.+++-...+..-.....+.|...-|.+..+ +.. .... -.|...+.+++.||||
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~-~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNP-LKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCC-CCcccccccceeEEEEEcCCC
Confidence 3333455667788888888877654321100000011122111333321 110 0111 1466788999999999
Q ss_pred CEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--Ce
Q 020756 95 SEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CS 169 (321)
Q Consensus 95 ~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~ 169 (321)
++|++ |..+..+.||+.+ .+++..| |.+.|.+++|--.-..|.+++ .|..|.+|+++....+.++-+| .+
T Consensus 215 kylat--gg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s---~Drsvkvw~~~~~s~vetlyGHqd~v 289 (479)
T KOG0299|consen 215 KYLAT--GGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSAS---ADRSVKVWSIDQLSYVETLYGHQDGV 289 (479)
T ss_pred cEEEe--cCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeee---cCCceEEEehhHhHHHHHHhCCccce
Confidence 99999 6788899999984 5677776 789999999998888888888 8999999999988877777776 57
Q ss_pred eeEEEccCCCEEEEEEcCCceeecCcEEEEeec--CceeEEeccCceEEEEEecC
Q 020756 170 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSLFFKKMFDKLFQAEWKPV 222 (321)
Q Consensus 170 ~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~--g~~l~~~~~~~~~~~~w~P~ 222 (321)
..+.-..-++.+-++. .|.+++||++. .++++..+.+.+-.+++--+
T Consensus 290 ~~IdaL~reR~vtVGg------rDrT~rlwKi~eesqlifrg~~~sidcv~~In~ 338 (479)
T KOG0299|consen 290 LGIDALSRERCVTVGG------RDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND 338 (479)
T ss_pred eeechhcccceEEecc------ccceeEEEeccccceeeeeCCCCCeeeEEEecc
Confidence 7777777777665565 49999999993 45667777666666655443
No 218
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.81 E-value=3.3e-07 Score=85.30 Aligned_cols=201 Identities=13% Similarity=0.180 Sum_probs=131.0
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK 81 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~ 81 (321)
|....|.||+..+ .+++....-+...+..+.|-..-..| +.++.| ....+|.++...- ......|
T Consensus 221 g~d~~v~Iw~~~t---~ehv~~~~ghr~~V~~L~fr~gt~~l-ys~s~D---------rsvkvw~~~~~s~--vetlyGH 285 (479)
T KOG0299|consen 221 GRDRHVQIWDCDT---LEHVKVFKGHRGAVSSLAFRKGTSEL-YSASAD---------RSVKVWSIDQLSY--VETLYGH 285 (479)
T ss_pred CCCceEEEecCcc---cchhhcccccccceeeeeeecCccce-eeeecC---------CceEEEehhHhHH--HHHHhCC
Confidence 4556777888888 56665545455555555554332333 222221 1222333332221 1112347
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC--CceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 159 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~--~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~ 159 (321)
.+.|.++.-.--++.+. .|..|+++.+|++. ...++.-+.+.+.|++|-.+ ..+++++ .+|.|.+|++.+.+
T Consensus 286 qd~v~~IdaL~reR~vt--VGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGS---dnG~IaLWs~~KKk 359 (479)
T KOG0299|consen 286 QDGVLGIDALSRERCVT--VGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGS---DNGSIALWSLLKKK 359 (479)
T ss_pred ccceeeechhcccceEE--eccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeecc---CCceEEEeeecccC
Confidence 77887776665554333 37789999999994 34455557778889988854 5667877 89999999998887
Q ss_pred EEEeeeC-C-------------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-----eeEEecc-CceEEEEE
Q 020756 160 QLGTTRA-E-------------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-----LFFKKMF-DKLFQAEW 219 (321)
Q Consensus 160 ~i~~~~~-~-------------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-----~l~~~~~-~~~~~~~w 219 (321)
.+.+... | .++.++..|...++++++. +++|+||-+... +++.... .-|..+.|
T Consensus 360 plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~------~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f 433 (479)
T KOG0299|consen 360 PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSW------SGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAF 433 (479)
T ss_pred ceeEeeccccccCCccccccccceeeeEecccCceEEecCC------CCceEEEEecCCccccceeeecccccEEEEEEE
Confidence 7655431 1 4677888999999999985 999999999533 3344443 46888999
Q ss_pred ecCCCCCCCC
Q 020756 220 KPVSPDKFGD 229 (321)
Q Consensus 220 ~P~~~~~~~~ 229 (321)
++++..++..
T Consensus 434 ~~sgk~ivag 443 (479)
T KOG0299|consen 434 SNSGKRIVAG 443 (479)
T ss_pred ccCCCEEEEe
Confidence 9999877754
No 219
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=98.80 E-value=2.7e-07 Score=89.70 Aligned_cols=163 Identities=10% Similarity=0.106 Sum_probs=114.5
Q ss_pred ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756 5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP 84 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~ 84 (321)
..++||.+.. ......-+.+.+..+..-|++.++-.. .|+ .|+++.. +. ..+....|.+-
T Consensus 122 ~TakvW~~~~-----l~~~l~gH~asVWAv~~l~e~~~vTgs----aDK---------tIklWk~-~~-~l~tf~gHtD~ 181 (745)
T KOG0301|consen 122 STAKVWRIGE-----LVYSLQGHTASVWAVASLPENTYVTGS----ADK---------TIKLWKG-GT-LLKTFSGHTDC 181 (745)
T ss_pred cceEEecchh-----hhcccCCcchheeeeeecCCCcEEecc----Ccc---------eeeeccC-Cc-hhhhhccchhh
Confidence 4577777754 223344445555555555666333221 122 2344322 22 22333358999
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEE
Q 020756 85 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG 162 (321)
Q Consensus 85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~ 162 (321)
|..++.-|++. |+.| ..|+.|++|++.++.+.+. |...+.++...++++.|+++| .|++++||+.. ++.+
T Consensus 182 VRgL~vl~~~~-flSc--sNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g---EDrtlriW~~~--e~~q 253 (745)
T KOG0301|consen 182 VRGLAVLDDSH-FLSC--SNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTG---EDRTLRIWKKD--ECVQ 253 (745)
T ss_pred eeeeEEecCCC-eEee--cCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEec---CCceEEEeecC--ceEE
Confidence 99999998765 5555 6689999999999988887 678899999999999999999 99999999986 6777
Q ss_pred eeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756 163 TTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 163 ~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
.+..+ ++.++..-++|. |++++| |+.|+||..+
T Consensus 254 ~I~lPttsiWsa~~L~NgD-Ivvg~S------DG~VrVfT~~ 288 (745)
T KOG0301|consen 254 VITLPTTSIWSAKVLLNGD-IVVGGS------DGRVRVFTVD 288 (745)
T ss_pred EEecCccceEEEEEeeCCC-EEEecc------CceEEEEEec
Confidence 77665 666777778888 566665 9999999874
No 220
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.80 E-value=1.9e-07 Score=83.51 Aligned_cols=181 Identities=12% Similarity=0.161 Sum_probs=125.9
Q ss_pred ceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEE
Q 020756 20 PLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAV 99 (321)
Q Consensus 20 ~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~ 99 (321)
|+...+-+.+.+.-..|-..|+-++.. ++.-.-+||.+ ..+....+.-.|+...+.+.-+|..+.+++
T Consensus 264 Pl~~ltgH~~vV~a~dWL~gg~Q~vTa----------SWDRTAnlwDV--Etge~v~~LtGHd~ELtHcstHptQrLVvT 331 (481)
T KOG0300|consen 264 PLMRLTGHRAVVSACDWLAGGQQMVTA----------SWDRTANLWDV--ETGEVVNILTGHDSELTHCSTHPTQRLVVT 331 (481)
T ss_pred eeeeeeccccceEehhhhcCcceeeee----------eccccceeeee--ccCceeccccCcchhccccccCCcceEEEE
Confidence 444455555566666677777766542 22223344443 333122333357778888888998876666
Q ss_pred EEccCCCeEEEEeCCC--ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC-eEEEeeeCC-CeeeEE
Q 020756 100 VYGFMPASATIFNKKC--RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE-CSVTSE 173 (321)
Q Consensus 100 ~~g~~~~~i~i~d~~~--~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~-~~i~~~~~~-~~~~~~ 173 (321)
...|.+.++||.+- ..+..| |...+.++.|+-|. .+++++ .|.+|++||+++. ..+.++... .+..++
T Consensus 332 --sSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgS---DDrTvKvWdLrNMRsplATIRtdS~~NRva 405 (481)
T KOG0300|consen 332 --SSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGS---DDRTVKVWDLRNMRSPLATIRTDSPANRVA 405 (481)
T ss_pred --eccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecC---CCceEEEeeeccccCcceeeecCCccceeE
Confidence 46788999999962 122333 78889999999765 456666 8899999999987 466666654 677889
Q ss_pred EccCCCEEEEEEcCCceeecCcEEEEeecCcee-------EEeccCceEEEEEecCCC
Q 020756 174 WSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF-------FKKMFDKLFQAEWKPVSP 224 (321)
Q Consensus 174 wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l-------~~~~~~~~~~~~w~P~~~ 224 (321)
.|-.+..|+.... +..++|||++|..+ ..+|...|+..+|.-+++
T Consensus 406 vs~g~~iIAiPhD------NRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp 457 (481)
T KOG0300|consen 406 VSKGHPIIAIPHD------NRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHP 457 (481)
T ss_pred eecCCceEEeccC------CceEEEEecCCCccccCCcccccccceeeeeeeccccCc
Confidence 9998888888872 55799999999876 335667899999987665
No 221
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=1.1e-06 Score=78.41 Aligned_cols=215 Identities=15% Similarity=0.234 Sum_probs=132.6
Q ss_pred CCceEEEEEcCCcCC-CCceeeeecccCccceEEeCC--CCCeeEEEEEecccCCCceeecceeEEEEEcCCCce--eee
Q 020756 3 SPASVQIYACGKDLQ-SQPLARRSFFRCSTVQLNWNR--GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE--GLV 77 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~-~~~i~~~~~f~~~~~~~~Wsp--~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~--~~v 77 (321)
..+.|+||+....+. =...+.-..+.+....+.|-+ -|+.++.++ .|++-..|. |+. -..+..|..- +..
T Consensus 33 sDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS---~Drtv~iWE-E~~-~~~~~~~~~Wv~~tt 107 (361)
T KOG2445|consen 33 SDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS---YDRTVSIWE-EQE-KSEEAHGRRWVRRTT 107 (361)
T ss_pred CCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe---cCCceeeee-ecc-cccccccceeEEEEE
Confidence 467899999855210 113334445677888999975 388877763 455444332 211 0111111111 112
Q ss_pred ecCCCCCeEEEEECcC--CCEEEEEEccCCCeEEEEeCC-------CceeEEe---------CCcCeeeEEEcCC---CC
Q 020756 78 PLRKEGPVHDVQWSYS--GSEFAVVYGFMPASATIFNKK-------CRPILEL---------GSGPYNTVRWNPK---GK 136 (321)
Q Consensus 78 ~l~~~~~v~~~~wsP~--g~~l~~~~g~~~~~i~i~d~~-------~~~~~~~---------~~~~~~~~~~sPd---G~ 136 (321)
..+....|+|+.|.|. |-.++.+ +.||.++||+.- ....+++ +..+..|+.|+|. ..
T Consensus 108 l~DsrssV~DV~FaP~hlGLklA~~--~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p 185 (361)
T KOG2445|consen 108 LVDSRSSVTDVKFAPKHLGLKLAAA--SADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEP 185 (361)
T ss_pred eecCCcceeEEEecchhcceEEEEe--ccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCc
Confidence 2356789999999995 5456665 668999999762 1111222 3567889999983 45
Q ss_pred eEEEEccCC--CCCcEEEEECCCC----eEEEeeeCC--CeeeEEEccC-C---CEEEEEEcCCceeecCcEEEEeecCc
Q 020756 137 FLCLAGFGN--LPGDMAFWDYVDG----KQLGTTRAE--CSVTSEWSPD-G---RYFMTATTAPRLQIDNGIKIFHHNGS 204 (321)
Q Consensus 137 ~l~~~g~~n--~~g~i~iwD~~~~----~~i~~~~~~--~~~~~~wSpd-G---~~l~t~~s~~rl~~d~~v~iw~~~g~ 204 (321)
+|+++.-.. .-+.++||..... ..+.++..+ .|++++|.|+ | ..||+++ .|+ |+||++.+.
T Consensus 186 ~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~------kDg-v~I~~v~~~ 258 (361)
T KOG2445|consen 186 LIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVAT------KDG-VRIFKVKVA 258 (361)
T ss_pred eEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEee------cCc-EEEEEEeec
Confidence 777775210 1257888875533 345555554 7889999996 4 4567777 355 999998631
Q ss_pred ---------------------ee--EEeccCceEEEEEecCCCCCCCCcc
Q 020756 205 ---------------------LF--FKKMFDKLFQAEWKPVSPDKFGDIS 231 (321)
Q Consensus 205 ---------------------~l--~~~~~~~~~~~~w~P~~~~~~~~~~ 231 (321)
.+ +..|..+++.+.|+-.+..+.+..+
T Consensus 259 ~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 259 RSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred cchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence 11 3346779999999988877776643
No 222
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.78 E-value=1.9e-07 Score=91.14 Aligned_cols=174 Identities=13% Similarity=0.218 Sum_probs=125.1
Q ss_pred CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCC--CeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeec--
Q 020756 4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGS--TGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPL-- 79 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G--~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l-- 79 (321)
.--|.||++... -..+.+..-+...+..++|-..| ..++.+ . .| ++.+ |..........+.+.
T Consensus 525 dRlIHV~Dv~rn--y~l~qtld~HSssITsvKFa~~gln~~Misc-G--AD---ksim-----Fr~~qk~~~g~~f~r~t 591 (1080)
T KOG1408|consen 525 DRLIHVYDVKRN--YDLVQTLDGHSSSITSVKFACNGLNRKMISC-G--AD---KSIM-----FRVNQKASSGRLFPRHT 591 (1080)
T ss_pred CceEEEEecccc--cchhhhhcccccceeEEEEeecCCceEEEec-c--Cc---hhhh-----eehhccccCceeccccc
Confidence 445778888751 23455555566777788887766 333332 1 11 2211 111111111111111
Q ss_pred --CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeC-CCceeEEe-----CCcCeeeEEEcCCCCeEEEEccCCCCCcEE
Q 020756 80 --RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMA 151 (321)
Q Consensus 80 --~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~~~~-----~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~ 151 (321)
-.+..++|++..|+.++++++ +.|..|+|||+ .++++..| +++..--+...|.|.||+++. .|.++.
T Consensus 592 ~t~~ktTlYDm~Vdp~~k~v~t~--cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atSc---sdktl~ 666 (1080)
T KOG1408|consen 592 QTLSKTTLYDMAVDPTSKLVVTV--CQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSC---SDKTLC 666 (1080)
T ss_pred cccccceEEEeeeCCCcceEEEE--ecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEee---cCCceE
Confidence 135789999999999999885 77899999999 46777777 345666788999999999998 889999
Q ss_pred EEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756 152 FWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 201 (321)
Q Consensus 152 iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~ 201 (321)
|+|.-+++++....+| .++.+.|++|=++|++++. |++|.||.+
T Consensus 667 ~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsg------DgCIFvW~l 712 (1080)
T KOG1408|consen 667 FVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSG------DGCIFVWKL 712 (1080)
T ss_pred EEEeccchhhhhhcCcchheeeeeecccchhheeecC------CceEEEEEC
Confidence 9999999999998887 6888999999999999995 999999998
No 223
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.78 E-value=1.3e-07 Score=82.61 Aligned_cols=110 Identities=18% Similarity=0.257 Sum_probs=89.2
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc----e---eEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEE
Q 020756 81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR----P---ILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW 153 (321)
Q Consensus 81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~----~---~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw 153 (321)
|+++|.++.+.+.-..=+. |..+..+..|++.-. + ..++.+-.++.++.-||++.++++| .|+.|+||
T Consensus 204 h~qpvlsldyas~~~rGis--gga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG---WD~RiRVy 278 (323)
T KOG0322|consen 204 HKQPVLSLDYASSCDRGIS--GGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG---WDHRIRVY 278 (323)
T ss_pred ccCcceeeeechhhcCCcC--CCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecc---cCCcEEEE
Confidence 7899999999864333222 455557888887321 2 2334567789999999999999999 99999999
Q ss_pred ECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756 154 DYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 201 (321)
Q Consensus 154 D~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~ 201 (321)
..+++..+..++.| .+.+++||||-..+|.++ .|..|-+|++
T Consensus 279 swrtl~pLAVLkyHsagvn~vAfspd~~lmAaas------kD~rISLWkL 322 (323)
T KOG0322|consen 279 SWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAAS------KDARISLWKL 322 (323)
T ss_pred EeccCCchhhhhhhhcceeEEEeCCCCchhhhcc------CCceEEeeec
Confidence 99999998888877 788999999999999999 5999999985
No 224
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.76 E-value=2.6e-07 Score=91.85 Aligned_cols=112 Identities=17% Similarity=0.215 Sum_probs=90.7
Q ss_pred cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe-CC----CceeE--EeCCcCeeeEEEcCCCCeEEEEccCCCCCcEE
Q 020756 79 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN-KK----CRPIL--ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMA 151 (321)
Q Consensus 79 l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d-~~----~~~~~--~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~ 151 (321)
+.|.-.+.++++||+++++++ +.++|+|.+|. .. ....+ ..|...++++.||+||.+|+++| ..+-+-
T Consensus 202 ~~Htf~~t~~~~spn~~~~Aa--~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG---~E~VLv 276 (792)
T KOG1963|consen 202 VHHTFNITCVALSPNERYLAA--GDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG---REGVLV 276 (792)
T ss_pred hhhcccceeEEeccccceEEE--eccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecc---cceEEE
Confidence 446666899999999999998 68899999994 32 12233 34788999999999999999999 999999
Q ss_pred EEECCCCeEEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756 152 FWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 201 (321)
Q Consensus 152 iwD~~~~~~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~ 201 (321)
+|.+.++++.....- ..+..+.||||+.+.++.. .||.|.+-..
T Consensus 277 ~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~------~DNqI~li~~ 321 (792)
T KOG1963|consen 277 LWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVL------EDNQIHLIKA 321 (792)
T ss_pred EEeecCCCcccccccCCeeEEEEEcCCCCeEEEEe------cCceEEEEec
Confidence 999998873332222 3788999999999999988 4999999775
No 225
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.75 E-value=3.6e-07 Score=85.09 Aligned_cols=175 Identities=15% Similarity=0.196 Sum_probs=124.9
Q ss_pred eEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce--eeeecCCCC
Q 020756 6 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE--GLVPLRKEG 83 (321)
Q Consensus 6 ~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~--~~v~l~~~~ 83 (321)
...||++... +.+.-.....+--++.+..||...++++.++.| +...||.+..-+... -...+.|..
T Consensus 302 ~f~~iD~R~~--~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D---------~T~kIWD~R~l~~K~sp~lst~~Hrr 370 (498)
T KOG4328|consen 302 NFNVIDLRTD--GSEYENLRLHKKKITSVALNPVCPWFLATASLD---------QTAKIWDLRQLRGKASPFLSTLPHRR 370 (498)
T ss_pred ceEEEEeecC--CccchhhhhhhcccceeecCCCCchheeecccC---------cceeeeehhhhcCCCCcceecccccc
Confidence 5567888874 556667777777889999999999998876543 222355554333322 245677999
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEeCC-----CceeEEe-CCcC------eeeEEEcCCCCeEEEEccCCCCCcEE
Q 020756 84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKK-----CRPILEL-GSGP------YNTVRWNPKGKFLCLAGFGNLPGDMA 151 (321)
Q Consensus 84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-----~~~~~~~-~~~~------~~~~~~sPdG~~l~~~g~~n~~g~i~ 151 (321)
+|+++.|||+|-.|++. +.|..|.|||.. ..+..++ |... .--..|.|+-.+|+++- .-..|.
T Consensus 371 sV~sAyFSPs~gtl~TT--~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~---~~r~ID 445 (498)
T KOG4328|consen 371 SVNSAYFSPSGGTLLTT--CQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGR---YPRPID 445 (498)
T ss_pred eeeeeEEcCCCCceEee--ccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEec---cCccee
Confidence 99999999988776663 668899999984 2344444 3221 12358999999999987 767899
Q ss_pred EEECCCCeEEEeeeCCCee----eEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756 152 FWDYVDGKQLGTTRAECSV----TSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 201 (321)
Q Consensus 152 iwD~~~~~~i~~~~~~~~~----~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~ 201 (321)
|+|-+.++.+..+..+..+ ..+|+|-+..+++|++ ..+.++||.-
T Consensus 446 v~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~-----s~Gki~vft~ 494 (498)
T KOG4328|consen 446 VFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGN-----SSGKIYVFTN 494 (498)
T ss_pred EEcCCCCEEeeeccCccccccccceeecccccceeccCC-----ccceEEEEec
Confidence 9999988888887666332 3689999997888875 2566666653
No 226
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.74 E-value=1.3e-06 Score=78.26 Aligned_cols=203 Identities=19% Similarity=0.199 Sum_probs=131.0
Q ss_pred EEEEEcCCcCCCCceeeeecccCc--cceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCC
Q 020756 7 VQIYACGKDLQSQPLARRSFFRCS--TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGP 84 (321)
Q Consensus 7 v~v~~~~~~~~~~~i~~~~~f~~~--~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~ 84 (321)
.|||++.- -++..++.+...+ .+.|.+ .-++|+++- ..+...|-...|..|+ +-......++.-..+
T Consensus 28 friyn~~P---~ke~~~r~~~~~G~~~veMLf--R~N~laLVG-----Gg~~pky~pNkviIWD-D~k~~~i~el~f~~~ 96 (346)
T KOG2111|consen 28 FRIYNCDP---FKESASRQFIDGGFKIVEMLF--RSNYLALVG-----GGSRPKYPPNKVIIWD-DLKERCIIELSFNSE 96 (346)
T ss_pred eEEEecCc---hhhhhhhccccCchhhhhHhh--hhceEEEec-----CCCCCCCCCceEEEEe-cccCcEEEEEEeccc
Confidence 46666654 2344444444333 222322 224555542 2233456666777776 333356677777899
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEEeCCCc--eeEEeC--CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE
Q 020756 85 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PILELG--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ 160 (321)
Q Consensus 85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~--~~~~~~--~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~ 160 (321)
|.++..+++ +++++ .+.+|.+|....+ .++.+. ..|-.-++..|.-..-+++-.|..-|.|.|.|+...+.
T Consensus 97 I~~V~l~r~--riVvv---l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~ 171 (346)
T KOG2111|consen 97 IKAVKLRRD--RIVVV---LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKP 171 (346)
T ss_pred eeeEEEcCC--eEEEE---ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCc
Confidence 999999976 46654 2568999988543 455552 23444566666554333333344569999999976544
Q ss_pred --EEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEecc----CceEEEEEecCCCCCCCCc
Q 020756 161 --LGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMF----DKLFQAEWKPVSPDKFGDI 230 (321)
Q Consensus 161 --i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~~~----~~~~~~~w~P~~~~~~~~~ 230 (321)
-..+.+| .+.+++.+-+|..+||+++ ...-|+|||. +|.++.+... ..+|.++|+|+...+....
T Consensus 172 ~~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt-----kGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS 245 (346)
T KOG2111|consen 172 NAPSIINAHDSDIACVALNLQGTLVATAST-----KGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS 245 (346)
T ss_pred CCceEEEcccCceeEEEEcCCccEEEEecc-----CcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc
Confidence 2445555 7999999999999999996 2444999997 7888866544 4899999999998887553
No 227
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.73 E-value=1.3e-06 Score=83.65 Aligned_cols=113 Identities=15% Similarity=0.163 Sum_probs=92.9
Q ss_pred cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC
Q 020756 79 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 155 (321)
Q Consensus 79 l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~ 155 (321)
-.|.+.|..+.|+.+-..|..+ ..+..+..|+.+...+... ....+.++.++|||..|++++ ++|.+||+
T Consensus 99 ~~h~~~v~~~~~~~~~~ciyS~--~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as-----~~ik~~~~ 171 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQRLGCIYSV--GADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTAS-----RQIKVLDI 171 (541)
T ss_pred CCCCCcceeeecccccCceEec--CCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEecc-----ceEEEEEc
Confidence 3488999999999988877775 5578999999976655544 566788999999999999988 89999999
Q ss_pred CCCeEEEeeeCC--CeeeEEEccC-----CCEEEEEEcCCceeecCcEEEEeecC
Q 020756 156 VDGKQLGTTRAE--CSVTSEWSPD-----GRYFMTATTAPRLQIDNGIKIFHHNG 203 (321)
Q Consensus 156 ~~~~~i~~~~~~--~~~~~~wSpd-----G~~l~t~~s~~rl~~d~~v~iw~~~g 203 (321)
++++.+.+|++| .+.++.|--+ |.|++++.. .+..+.+|-+.+
T Consensus 172 ~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~-----~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 172 ETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA-----AERGITVWVVEK 221 (541)
T ss_pred cCceEEEEecCCCcceEEEEEEEeccccccceeeeccc-----cccceeEEEEEc
Confidence 999999999998 6777777766 899988775 466778887643
No 228
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.71 E-value=3.6e-07 Score=82.04 Aligned_cols=149 Identities=16% Similarity=0.254 Sum_probs=111.3
Q ss_pred cCCCCCeEEEEECcC---CC--EEEEEEccCCCeEEEEeCCCc----eeEEe----CCcCeeeEEEcCCCC----eEEEE
Q 020756 79 LRKEGPVHDVQWSYS---GS--EFAVVYGFMPASATIFNKKCR----PILEL----GSGPYNTVRWNPKGK----FLCLA 141 (321)
Q Consensus 79 l~~~~~v~~~~wsP~---g~--~l~~~~g~~~~~i~i~d~~~~----~~~~~----~~~~~~~~~~sPdG~----~l~~~ 141 (321)
-+|..+|.+++|++- +. .|+++ | ..+++||...+. .++.. +.....+++|+-|-. +|+++
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatv-G--~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATV-G--GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEe-C--CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 357788999999852 22 33443 3 348999976433 23333 455678899987533 78888
Q ss_pred ccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccC-CCEEEEEEcCCceeecCcEEEEeecCce-e-----EEeccC
Q 020756 142 GFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPD-GRYFMTATTAPRLQIDNGIKIFHHNGSL-F-----FKKMFD 212 (321)
Q Consensus 142 g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpd-G~~l~t~~s~~rl~~d~~v~iw~~~g~~-l-----~~~~~~ 212 (321)
| ..|-|+|.|+.++++...+.+| .+..+.+.|+ -+++++++ .|..++||+++... + +.+|.+
T Consensus 112 G---~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~S------kD~svRlwnI~~~~Cv~VfGG~egHrd 182 (385)
T KOG1034|consen 112 G---YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSAS------KDHSVRLWNIQTDVCVAVFGGVEGHRD 182 (385)
T ss_pred c---ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEec------CCceEEEEeccCCeEEEEecccccccC
Confidence 8 8899999999999988888776 7889999997 46777777 49999999996553 3 557899
Q ss_pred ceEEEEEecCCCCCCCCc-chhhhcccc
Q 020756 213 KLFQAEWKPVSPDKFGDI-SELIKSVGS 239 (321)
Q Consensus 213 ~~~~~~w~P~~~~~~~~~-~~~~~~~~~ 239 (321)
+|.++.|++++..+++-. |...+.|.+
T Consensus 183 eVLSvD~~~~gd~i~ScGmDhslk~W~l 210 (385)
T KOG1034|consen 183 EVLSVDFSLDGDRIASCGMDHSLKLWRL 210 (385)
T ss_pred cEEEEEEcCCCCeeeccCCcceEEEEec
Confidence 999999999999888774 655566644
No 229
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.69 E-value=7.9e-07 Score=80.17 Aligned_cols=177 Identities=15% Similarity=0.168 Sum_probs=120.5
Q ss_pred ceEEEEEcCCcCCCCceeeeecccCccceEEeCCC-CCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC-
Q 020756 5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRG-STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE- 82 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~-G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~- 82 (321)
+.|+||+..+ ++.+...+..+.-.-.+.+..+ +-..+..+++| |...+|.+...+...++..-.+.
T Consensus 50 gsv~lyd~~t---g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssD---------G~Vr~wD~Rs~~e~a~~~~~~~~~ 117 (376)
T KOG1188|consen 50 GSVRLYDKGT---GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSD---------GTVRLWDIRSQAESARISWTQQSG 117 (376)
T ss_pred CeEEEEeccc---hhhhheecCCCCcccceEEecCCCCCeeEEeccC---------CeEEEEEeecchhhhheeccCCCC
Confidence 6899999988 6777777777766677787663 44444544444 67777877776653333222222
Q ss_pred CCeEEEEECcCCCEEEEEE--ccCCCeEEEEeCCCc--eeEEe---CCcCeeeEEEcCCCC-eEEEEccCCCCCcEEEEE
Q 020756 83 GPVHDVQWSYSGSEFAVVY--GFMPASATIFNKKCR--PILEL---GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWD 154 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~--g~~~~~i~i~d~~~~--~~~~~---~~~~~~~~~~sPdG~-~l~~~g~~n~~g~i~iwD 154 (321)
.+-.+++-+..++.|+.-. -..++.+.+||++.. ++..+ |...|.++.|+|..- +|++++ .||-|.|||
T Consensus 118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGS---vDGLvnlfD 194 (376)
T KOG1188|consen 118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGS---VDGLVNLFD 194 (376)
T ss_pred CcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeec---ccceEEeee
Confidence 3566677776777777621 123568999999654 24444 889999999999765 555565 899999999
Q ss_pred CCCC----eEEEeeeCC-CeeeEEEccCC-CEEEEEEcCCceeecCcEEEEeec
Q 020756 155 YVDG----KQLGTTRAE-CSVTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 155 ~~~~----~~i~~~~~~-~~~~~~wSpdG-~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
++.- .++.++... .|..+.|..++ +.|.+-+. ..++.+|++.
T Consensus 195 ~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH------~Etf~~~ele 242 (376)
T KOG1188|consen 195 TKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH------METFAIYELE 242 (376)
T ss_pred cCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc------cCceeEEEcc
Confidence 9744 234445443 58889999998 23666663 8999999984
No 230
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=98.68 E-value=6.3e-07 Score=80.36 Aligned_cols=168 Identities=16% Similarity=0.214 Sum_probs=110.7
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecc------cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCcee
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFF------RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG 75 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f------~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~ 75 (321)
|.-..||||++..-+ +.+-..-+++ +.-...+.+||-...++.+ .+|.-...||.. +++...
T Consensus 176 GykrcirvFdt~RpG-r~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~---------gsY~q~~giy~~--~~~~pl 243 (406)
T KOG2919|consen 176 GYKRCIRVFDTSRPG-RDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAV---------GSYGQRVGIYND--DGRRPL 243 (406)
T ss_pred cccceEEEeeccCCC-CCCcchhhhhcccccccceeeeeeccCCCCcceee---------ecccceeeeEec--CCCCce
Confidence 455689999995421 1111111122 3445577888866644443 133333345543 333344
Q ss_pred eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC--ceeEEe--C---CcCeeeEEEcCCCCeEEEEccCCCCC
Q 020756 76 LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPILEL--G---SGPYNTVRWNPKGKFLCLAGFGNLPG 148 (321)
Q Consensus 76 ~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~--~~~~~~--~---~~~~~~~~~sPdG~~l~~~g~~n~~g 148 (321)
.+.-.|++.|+.++|.++|+.|.+- ...+.+|..||++. .++..+ | +..+--+...|+|++|+.++ .+|
T Consensus 244 ~llggh~gGvThL~~~edGn~lfsG-aRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~---tdG 319 (406)
T KOG2919|consen 244 QLLGGHGGGVTHLQWCEDGNKLFSG-ARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGD---TDG 319 (406)
T ss_pred eeecccCCCeeeEEeccCcCeeccc-ccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccC---CCc
Confidence 5555799999999999999999884 23456899999964 345444 2 34555677789999999998 899
Q ss_pred cEEEEECCC-CeEEEeeeCC--CeeeEEEccCCCEEEEEE
Q 020756 149 DMAFWDYVD-GKQLGTTRAE--CSVTSEWSPDGRYFMTAT 185 (321)
Q Consensus 149 ~i~iwD~~~-~~~i~~~~~~--~~~~~~wSpdG~~l~t~~ 185 (321)
.|.+||+++ +..+..+..+ ++..++++|-=..++|++
T Consensus 320 ~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss 359 (406)
T KOG2919|consen 320 SVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS 359 (406)
T ss_pred cEEEEecCCCCCcccccccccccccceecCcccceeeecc
Confidence 999999987 5545555443 677789999866666666
No 231
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.64 E-value=8.2e-07 Score=79.13 Aligned_cols=113 Identities=15% Similarity=0.278 Sum_probs=87.8
Q ss_pred ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC--c---eeEE--eCCcCeeeEEEcC--CCCeEEEEccCCCCC
Q 020756 78 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--R---PILE--LGSGPYNTVRWNP--KGKFLCLAGFGNLPG 148 (321)
Q Consensus 78 ~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~--~---~~~~--~~~~~~~~~~~sP--dG~~l~~~g~~n~~g 148 (321)
.-.|.+-||++.|.+.|+++|+| ..|.++.|||.+. . .... .|.+.+..+.|.+ .|+.|++++ .|+
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtC--SsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS---~Dr 83 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATC--SSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS---YDR 83 (361)
T ss_pred ccCCcceeeeeeecccCceeeec--cCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe---cCC
Confidence 33577899999999999999997 5578999999632 1 1112 2888999999986 699999999 999
Q ss_pred cEEEEECC--C-------CeEEEeeeCC--CeeeEEEccC--CCEEEEEEcCCceeecCcEEEEee
Q 020756 149 DMAFWDYV--D-------GKQLGTTRAE--CSVTSEWSPD--GRYFMTATTAPRLQIDNGIKIFHH 201 (321)
Q Consensus 149 ~i~iwD~~--~-------~~~i~~~~~~--~~~~~~wSpd--G~~l~t~~s~~rl~~d~~v~iw~~ 201 (321)
++.||.-. + ....+++... .+++++|+|. |-.||+++ .|+.++||+.
T Consensus 84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~------aDG~lRIYEA 143 (361)
T KOG2445|consen 84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAAS------ADGILRIYEA 143 (361)
T ss_pred ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEec------cCcEEEEEec
Confidence 99999752 1 1234445443 7899999995 88888888 4999999986
No 232
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=7.5e-07 Score=81.63 Aligned_cols=139 Identities=14% Similarity=0.186 Sum_probs=111.5
Q ss_pred cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC------C-ceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCC
Q 020756 79 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK------C-RPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPG 148 (321)
Q Consensus 79 l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~------~-~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g 148 (321)
+.|.+-|++++||.+|+.|+. |..|..+.+|++. . ++|... |...+.++.|.-..++|.+++ .++
T Consensus 53 ~~H~GCiNAlqFS~N~~~L~S--GGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~---~~~ 127 (609)
T KOG4227|consen 53 REHTGCINALQFSHNDRFLAS--GGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE---RWG 127 (609)
T ss_pred hhhccccceeeeccCCeEEee--cCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC---Ccc
Confidence 358899999999999888777 6778899999873 2 455544 457899999999888888888 889
Q ss_pred cEEEEECCCCeEEEeeeCC----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-----CceeEEecc-CceEEEE
Q 020756 149 DMAFWDYVDGKQLGTTRAE----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-----GSLFFKKMF-DKLFQAE 218 (321)
Q Consensus 149 ~i~iwD~~~~~~i~~~~~~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-----g~~l~~~~~-~~~~~~~ 218 (321)
+|.+.|+++.+.+..+.+. .++.+..+|....|++.+ .+..|.|||.. +.+++.... ..++.+.
T Consensus 128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t------~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~ 201 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVT------RAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE 201 (609)
T ss_pred eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEe------cCceEEEEeccCCCCCCceeeecCCCccceeee
Confidence 9999999999888887664 688899999988888888 38889999984 344444443 5789999
Q ss_pred EecCCCCCCC
Q 020756 219 WKPVSPDKFG 228 (321)
Q Consensus 219 w~P~~~~~~~ 228 (321)
|+|..|.++.
T Consensus 202 F~P~~P~Li~ 211 (609)
T KOG4227|consen 202 FHPETPALIL 211 (609)
T ss_pred ecCCCceeEE
Confidence 9998776663
No 233
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.58 E-value=2e-05 Score=71.87 Aligned_cols=208 Identities=14% Similarity=0.218 Sum_probs=134.3
Q ss_pred ceEEEEEcCCcCCCCc-eeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee---ecC
Q 020756 5 ASVQIYACGKDLQSQP-LARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV---PLR 80 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~-i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v---~l~ 80 (321)
.-|.+|++.... ++. .-++-.--....-|.|+|+++.|.+....+. .|...-|.++-+.+....+ .+.
T Consensus 16 ~gI~v~~ld~~~-g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~-------~ggvaay~iD~~~G~Lt~ln~~~~~ 87 (346)
T COG2706 16 QGIYVFNLDTKT-GELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGE-------EGGVAAYRIDPDDGRLTFLNRQTLP 87 (346)
T ss_pred CceEEEEEeCcc-cccchhhhccccCCCceEEECCCCCEEEEEEecCC-------cCcEEEEEEcCCCCeEEEeeccccC
Confidence 347788887522 222 2222223356667899999999988754321 1444456666542222222 112
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-----eeEEe-CCcC----------eeeEEEcCCCCeEEEEccC
Q 020756 81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-----PILEL-GSGP----------YNTVRWNPKGKFLCLAGFG 144 (321)
Q Consensus 81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-----~~~~~-~~~~----------~~~~~~sPdG~~l~~~g~~ 144 (321)
..+-.-++.+++|++++++ .+..+.|.++-++.. .+..+ |.+. +....+.|+|++|++...|
T Consensus 88 -g~~p~yvsvd~~g~~vf~A-nY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG 165 (346)
T COG2706 88 -GSPPCYVSVDEDGRFVFVA-NYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG 165 (346)
T ss_pred -CCCCeEEEECCCCCEEEEE-EccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC
Confidence 2233779999999988776 566689999977431 22222 3333 7789999999999999854
Q ss_pred CCCCcEEEEECCCCeEEEeeeC-----CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc--ee---EE-----e
Q 020756 145 NLPGDMAFWDYVDGKQLGTTRA-----ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS--LF---FK-----K 209 (321)
Q Consensus 145 n~~g~i~iwD~~~~~~i~~~~~-----~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~--~l---~~-----~ 209 (321)
. -.|.+|+++.+++...... .....+.|+|+|++..+.+- .+++|-+|.+++. .+ .. .
T Consensus 166 ~--Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~E-----L~stV~v~~y~~~~g~~~~lQ~i~tlP~ 238 (346)
T COG2706 166 T--DRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNE-----LNSTVDVLEYNPAVGKFEELQTIDTLPE 238 (346)
T ss_pred C--ceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEec-----cCCEEEEEEEcCCCceEEEeeeeccCcc
Confidence 3 3799999997754332221 25677999999998887774 6999999999752 11 11 1
Q ss_pred c---cCceEEEEEecCCCCCCCC
Q 020756 210 M---FDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 210 ~---~~~~~~~~w~P~~~~~~~~ 229 (321)
. .....++.-+|++..+|..
T Consensus 239 dF~g~~~~aaIhis~dGrFLYas 261 (346)
T COG2706 239 DFTGTNWAAAIHISPDGRFLYAS 261 (346)
T ss_pred ccCCCCceeEEEECCCCCEEEEe
Confidence 1 1256778889999988865
No 234
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.58 E-value=9.1e-06 Score=74.59 Aligned_cols=128 Identities=17% Similarity=0.319 Sum_probs=100.8
Q ss_pred eEEEEECcC--CCEEEEEEccCCCeEEEEeCCC--ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756 85 VHDVQWSYS--GSEFAVVYGFMPASATIFNKKC--RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 158 (321)
Q Consensus 85 v~~~~wsP~--g~~l~~~~g~~~~~i~i~d~~~--~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~ 158 (321)
++++.|-|. ...|+.+. .-+.+++||.+. .++..| ...++.++.--|.|++|.++. ..++|..+|++.+
T Consensus 205 ~tdi~Fl~g~~~~~fat~T--~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn---~~g~l~~FD~r~~ 279 (412)
T KOG3881|consen 205 ITDIRFLEGSPNYKFATIT--RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGN---TKGQLAKFDLRGG 279 (412)
T ss_pred eccceecCCCCCceEEEEe--cceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEec---ccchhheecccCc
Confidence 568888776 77888874 456999999853 466666 688999999999999999987 8899999999999
Q ss_pred eEEEe-eeC--CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc-eeEEe-ccCceEEEEEecCC
Q 020756 159 KQLGT-TRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS-LFFKK-MFDKLFQAEWKPVS 223 (321)
Q Consensus 159 ~~i~~-~~~--~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~-~l~~~-~~~~~~~~~w~P~~ 223 (321)
+.+.. +.+ ..+.++.-+|.+++|++++ .|.-++|+|+..+ ++++. -...+..+..+++-
T Consensus 280 kl~g~~~kg~tGsirsih~hp~~~~las~G------LDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~~ 343 (412)
T KOG3881|consen 280 KLLGCGLKGITGSIRSIHCHPTHPVLASCG------LDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDDV 343 (412)
T ss_pred eeeccccCCccCCcceEEEcCCCceEEeec------cceeEEEeecccchhhhhhhhhccccEEEecCCc
Confidence 87766 444 2788899999999999999 5999999999764 44332 23456666666654
No 235
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.57 E-value=4.3e-06 Score=73.26 Aligned_cols=141 Identities=16% Similarity=0.214 Sum_probs=104.2
Q ss_pred CCCCCeEEEEECc-CCCEEEEEEccCCCeEEEEeCCCc-eeEEe------------CCcCeeeEEEcCCCCeEEEEccCC
Q 020756 80 RKEGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKCR-PILEL------------GSGPYNTVRWNPKGKFLCLAGFGN 145 (321)
Q Consensus 80 ~~~~~v~~~~wsP-~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~------------~~~~~~~~~~sPdG~~l~~~g~~n 145 (321)
.+.+.+.+..|.- ++++++...|++++.+.+||+..+ .+..| |.+++.++.|.+.-..=+.+|
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgg--- 224 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGG--- 224 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCC---
Confidence 3678899999854 677888888999999999999553 22221 678889999986443334444
Q ss_pred CCCcEEEEECCC--C----eEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee--EEeccCceEE
Q 020756 146 LPGDMAFWDYVD--G----KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF--FKKMFDKLFQ 216 (321)
Q Consensus 146 ~~g~i~iwD~~~--~----~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l--~~~~~~~~~~ 216 (321)
.+-.+..|.++. + ....+++++.+..+..-||++.+||++ =|+.++||+. +++.+ .+.|...+.+
T Consensus 225 a~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAG------WD~RiRVyswrtl~pLAVLkyHsagvn~ 298 (323)
T KOG0322|consen 225 ADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAG------WDHRIRVYSWRTLNPLAVLKYHSAGVNA 298 (323)
T ss_pred ccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecc------cCCcEEEEEeccCCchhhhhhhhcceeE
Confidence 444666676552 3 233455666888899999999999999 4999999998 45544 7778899999
Q ss_pred EEEecCCCCCCCC
Q 020756 217 AEWKPVSPDKFGD 229 (321)
Q Consensus 217 ~~w~P~~~~~~~~ 229 (321)
++|+|+.+-+..+
T Consensus 299 vAfspd~~lmAaa 311 (323)
T KOG0322|consen 299 VAFSPDCELMAAA 311 (323)
T ss_pred EEeCCCCchhhhc
Confidence 9999997665554
No 236
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.56 E-value=1.8e-06 Score=84.91 Aligned_cols=179 Identities=15% Similarity=0.219 Sum_probs=115.4
Q ss_pred CCceEEEEEcCCcCCCCceeee---------ecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCc
Q 020756 3 SPASVQIYACGKDLQSQPLARR---------SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH 73 (321)
Q Consensus 3 ~p~~v~v~~~~~~~~~~~i~~~---------~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~ 73 (321)
.+|.|..|++..+..-..+... .---.....+.|.+...+..++ .||. |. ||.....|..
T Consensus 313 sDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiV-GTe~---G~-------v~~~~r~g~~ 381 (555)
T KOG1587|consen 313 SDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIV-GTEE---GK-------VYKGCRKGYT 381 (555)
T ss_pred cCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEE-EcCC---cE-------EEEEeccCCc
Confidence 4788888877764311111111 1112455577777765555443 2321 22 3333333322
Q ss_pred eee--------eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC--CceeEEe--CCcCeeeEEEcCCCCeEEEE
Q 020756 74 EGL--------VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--CRPILEL--GSGPYNTVRWNPKGKFLCLA 141 (321)
Q Consensus 74 ~~~--------v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~--~~~~~~~--~~~~~~~~~~sPdG~~l~~~ 141 (321)
... ....|.++|+.+.++|-+..++...| |-+++||+.. ..++..+ +...+.+++|||---.++++
T Consensus 382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g--DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~ 459 (555)
T KOG1587|consen 382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG--DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT 459 (555)
T ss_pred ccccccccccccccccCcceEeeecCCCccceeeeec--cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence 211 22347899999999999998887755 7899999764 5577766 45568999999977666555
Q ss_pred ccCCCCCcEEEEECCCC--eEEEeeeC--CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756 142 GFGNLPGDMAFWDYVDG--KQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 142 g~~n~~g~i~iwD~~~~--~~i~~~~~--~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
+ +.+|.|.|||+... ..+.+... ...+.+.|+++|++|+.+. ..+.+++|++.
T Consensus 460 ~--d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd------~~G~~~~~~l~ 516 (555)
T KOG1587|consen 460 V--DGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGD------ANGTTHILKLS 516 (555)
T ss_pred E--cCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEec------CCCcEEEEEcC
Confidence 5 26899999998744 33333322 3456689999999999999 47889998874
No 237
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.55 E-value=6.4e-06 Score=79.48 Aligned_cols=188 Identities=17% Similarity=0.234 Sum_probs=103.9
Q ss_pred eEEEEEcCCc-----CCCCceeeeecccCc--cceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee
Q 020756 6 SVQIYACGKD-----LQSQPLARRSFFRCS--TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP 78 (321)
Q Consensus 6 ~v~v~~~~~~-----~~~~~i~~~~~f~~~--~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~ 78 (321)
.|+.+++.+. +..-++..+.....+ ...+.+||+|++++++. . |+-.||. ..+....
T Consensus 3 ~i~~~~~~~~~~~~dg~~~~l~~k~lg~~~~~p~~ls~npngr~v~V~g--------~---geY~iyt--~~~~r~k--- 66 (443)
T PF04053_consen 3 EIRTANLKNISEIKDGERLPLSVKELGSCEIYPQSLSHNPNGRFVLVCG--------D---GEYEIYT--ALAWRNK--- 66 (443)
T ss_dssp EEEEEE--S-----TTS-B----EEEEE-SS--SEEEE-TTSSEEEEEE--------T---TEEEEEE--TTTTEEE---
T ss_pred ceEEEECcCCCccCCCceeeEEeccCCCCCcCCeeEEECCCCCEEEEEc--------C---CEEEEEE--ccCCccc---
Confidence 4677777663 112234455544433 57899999999999951 1 2212332 2222221
Q ss_pred cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE-eCCCceeEEeC-CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756 79 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF-NKKCRPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 156 (321)
Q Consensus 79 l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~-d~~~~~~~~~~-~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~ 156 (321)
..+...++.|.+.+ .||+. ....+|.|| +.+......+. ...+..+.. |.+|+..+ . +.|.|||..
T Consensus 67 --~~G~g~~~vw~~~n-~yAv~--~~~~~I~I~kn~~~~~~k~i~~~~~~~~If~---G~LL~~~~---~-~~i~~yDw~ 134 (443)
T PF04053_consen 67 --AFGSGLSFVWSSRN-RYAVL--ESSSTIKIYKNFKNEVVKSIKLPFSVEKIFG---GNLLGVKS---S-DFICFYDWE 134 (443)
T ss_dssp --EEEE-SEEEE-TSS-EEEEE---TTS-EEEEETTEE-TT-----SS-EEEEE----SSSEEEEE---T-TEEEEE-TT
T ss_pred --ccCceeEEEEecCc-cEEEE--ECCCeEEEEEcCccccceEEcCCcccceEEc---CcEEEEEC---C-CCEEEEEhh
Confidence 24667789999955 57775 335689996 45444433442 223455544 89888886 2 379999999
Q ss_pred CCeEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc------------ee--EEeccCceEEEEEecC
Q 020756 157 DGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS------------LF--FKKMFDKLFQAEWKPV 222 (321)
Q Consensus 157 ~~~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~------------~l--~~~~~~~~~~~~w~P~ 222 (321)
+++.+..+....+..+.||++|++++..+ ++.+.|++++-+ .+ ..+-...+.+..|.-+
T Consensus 135 ~~~~i~~i~v~~vk~V~Ws~~g~~val~t-------~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 135 TGKLIRRIDVSAVKYVIWSDDGELVALVT-------KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp T--EEEEESS-E-EEEEE-TTSSEEEEE--------S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred HcceeeEEecCCCcEEEEECCCCEEEEEe-------CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC
Confidence 99999999877788999999999999998 889999998766 44 2233568888999877
Q ss_pred CCCCCCC
Q 020756 223 SPDKFGD 229 (321)
Q Consensus 223 ~~~~~~~ 229 (321)
-.+|+.
T Consensus 208 -~fiYtT 213 (443)
T PF04053_consen 208 -CFIYTT 213 (443)
T ss_dssp -EEEEE-
T ss_pred -EEEEEc
Confidence 555554
No 238
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.54 E-value=3e-06 Score=73.47 Aligned_cols=145 Identities=14% Similarity=0.212 Sum_probs=98.4
Q ss_pred EEeCCCCCeeEEEEEecccCCCceeecceeEEEEEc-CC------Cceeeee-cCCCCCeEEEEECcCCCEEEEEEccCC
Q 020756 34 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT-DG------THEGLVP-LRKEGPVHDVQWSYSGSEFAVVYGFMP 105 (321)
Q Consensus 34 ~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~-~g------~~~~~v~-l~~~~~v~~~~wsP~g~~l~~~~g~~~ 105 (321)
-.|+|.++++++. +-||...++.+.. .. +....++ ..|++||++++|. .++|+++ | |
T Consensus 16 qa~sp~~~~l~ag----------n~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~-g--d 80 (325)
T KOG0649|consen 16 QAISPSKQYLFAG----------NLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSG-G--D 80 (325)
T ss_pred HhhCCcceEEEEe----------cCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeec-c--C
Confidence 3689999997663 2235544454432 11 1123444 4589999999998 3344442 3 5
Q ss_pred CeEEEEeC-------CCcee-------EE--eCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--
Q 020756 106 ASATIFNK-------KCRPI-------LE--LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-- 167 (321)
Q Consensus 106 ~~i~i~d~-------~~~~~-------~~--~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-- 167 (321)
+.++-|.- .++.. +. ..--.+|.+...|..+.|+++| .|+.++-||+++|+....+.+|
T Consensus 81 G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag---GD~~~y~~dlE~G~i~r~~rGHtD 157 (325)
T KOG0649|consen 81 GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG---GDGVIYQVDLEDGRIQREYRGHTD 157 (325)
T ss_pred ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec---CCeEEEEEEecCCEEEEEEcCCcc
Confidence 77776642 12211 11 1234589999999999999998 8899999999999999999988
Q ss_pred CeeeEEE-ccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756 168 CSVTSEW-SPDGRYFMTATTAPRLQIDNGIKIFHHNG 203 (321)
Q Consensus 168 ~~~~~~w-SpdG~~l~t~~s~~rl~~d~~v~iw~~~g 203 (321)
.+.++.- +..|+ |++++ .|++++|||...
T Consensus 158 YvH~vv~R~~~~q-ilsG~------EDGtvRvWd~kt 187 (325)
T KOG0649|consen 158 YVHSVVGRNANGQ-ILSGA------EDGTVRVWDTKT 187 (325)
T ss_pred eeeeeeecccCcc-eeecC------CCccEEEEeccc
Confidence 5666555 45555 77777 599999999843
No 239
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.51 E-value=2.3e-06 Score=81.91 Aligned_cols=154 Identities=12% Similarity=0.132 Sum_probs=110.7
Q ss_pred eEEEEEcCCC-ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCcee-EEe--------CC-----cCee
Q 020756 63 KLNYLTTDGT-HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL--------GS-----GPYN 127 (321)
Q Consensus 63 ~l~~l~~~g~-~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~-~~~--------~~-----~~~~ 127 (321)
.||.+++..+ ....+.+ ..+.++.|..++-...|++ |..++.+.+||.+++.+ ..+ +. ..+.
T Consensus 156 evYRlNLEqGrfL~P~~~-~~~~lN~v~in~~hgLla~--Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svT 232 (703)
T KOG2321|consen 156 EVYRLNLEQGRFLNPFET-DSGELNVVSINEEHGLLAC--GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVT 232 (703)
T ss_pred ceEEEEcccccccccccc-ccccceeeeecCccceEEe--cccCceEEEecchhhhhheeeecccccCCCccccccCcce
Confidence 4666666433 2222221 2478999999998777776 78899999999876532 222 11 2378
Q ss_pred eEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC---CeeeEEEccC--CCEEEEEEcCCceeecCcEEEEee-
Q 020756 128 TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPD--GRYFMTATTAPRLQIDNGIKIFHH- 201 (321)
Q Consensus 128 ~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~---~~~~~~wSpd--G~~l~t~~s~~rl~~d~~v~iw~~- 201 (321)
++.|+-+|=.++++. ..|.|+|||+++.+.+..-.+. .+..+.|-+. +..+++.. ...++|||-
T Consensus 233 al~F~d~gL~~aVGt---s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~D-------k~~~kiWd~~ 302 (703)
T KOG2321|consen 233 ALKFRDDGLHVAVGT---STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMD-------KRILKIWDEC 302 (703)
T ss_pred EEEecCCceeEEeec---cCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecc-------hHHhhhcccc
Confidence 999999999999988 8899999999988665543332 7788999775 45555555 678999996
Q ss_pred cCcee-EEeccCceEEEEEecCCCCCCCC
Q 020756 202 NGSLF-FKKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 202 ~g~~l-~~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
+|+.+ .......+.+++.-|+...+|.+
T Consensus 303 ~Gk~~asiEpt~~lND~C~~p~sGm~f~A 331 (703)
T KOG2321|consen 303 TGKPMASIEPTSDLNDFCFVPGSGMFFTA 331 (703)
T ss_pred cCCceeeccccCCcCceeeecCCceEEEe
Confidence 67766 44555679999999998877765
No 240
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=98.48 E-value=2.9e-05 Score=73.50 Aligned_cols=158 Identities=12% Similarity=0.138 Sum_probs=97.5
Q ss_pred eeEEEEEcCCCceeeeecCCCCCe-EEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEeC-CcCeeeEEEcCCCCeE
Q 020756 62 SKLNYLTTDGTHEGLVPLRKEGPV-HDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILELG-SGPYNTVRWNPKGKFL 138 (321)
Q Consensus 62 ~~l~~l~~~g~~~~~v~l~~~~~v-~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~~-~~~~~~~~~sPdG~~l 138 (321)
..+..|+.... +..-.+...+.+ ..+.++|||+++.++ +.++.+.++|+.. +.+.++. ......+++||||++|
T Consensus 16 ~~v~viD~~t~-~~~~~i~~~~~~h~~~~~s~Dgr~~yv~--~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~ 92 (369)
T PF02239_consen 16 GSVAVIDGATN-KVVARIPTGGAPHAGLKFSPDGRYLYVA--NRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYV 92 (369)
T ss_dssp TEEEEEETTT--SEEEEEE-STTEEEEEE-TT-SSEEEEE--ETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEE
T ss_pred CEEEEEECCCC-eEEEEEcCCCCceeEEEecCCCCEEEEE--cCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEE
Confidence 34677776543 222222233344 457899999999987 4578999999954 4556662 2335679999999999
Q ss_pred EEEccCCCCCcEEEEECCCCeEEEeeeCC---------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC-cee--
Q 020756 139 CLAGFGNLPGDMAFWDYVDGKQLGTTRAE---------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLF-- 206 (321)
Q Consensus 139 ~~~g~~n~~g~i~iwD~~~~~~i~~~~~~---------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g-~~l-- 206 (321)
+++.. ..+.+.++|.++.+.+..+... .+..+.-+|....++++.- ..+.+.+-|+.. ..+
T Consensus 93 ~v~n~--~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk-----d~~~I~vVdy~d~~~~~~ 165 (369)
T PF02239_consen 93 YVANY--EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK-----DTGEIWVVDYSDPKNLKV 165 (369)
T ss_dssp EEEEE--ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET-----TTTEEEEEETTTSSCEEE
T ss_pred EEEec--CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc-----cCCeEEEEEeccccccce
Confidence 99873 4689999999999888876543 3456777899887776662 135566667643 222
Q ss_pred -EEeccCceEEEEEecCCCCCCCC
Q 020756 207 -FKKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 207 -~~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
....-..+.++.|.|+..+++..
T Consensus 166 ~~i~~g~~~~D~~~dpdgry~~va 189 (369)
T PF02239_consen 166 TTIKVGRFPHDGGFDPDGRYFLVA 189 (369)
T ss_dssp EEEE--TTEEEEEE-TTSSEEEEE
T ss_pred eeecccccccccccCcccceeeec
Confidence 22233468899999998877653
No 241
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.45 E-value=8.2e-06 Score=78.21 Aligned_cols=140 Identities=21% Similarity=0.279 Sum_probs=98.9
Q ss_pred EEEEEC-cCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEE
Q 020756 86 HDVQWS-YSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL 161 (321)
Q Consensus 86 ~~~~ws-P~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i 161 (321)
.|+.++ |....+++..| ..|+-+++. +.-+..| ..+.+|++..+|...+|++++ .+|.|.+||.+....+
T Consensus 137 RDm~y~~~scDly~~gsg---~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt---~~g~VEfwDpR~ksrv 210 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSG---SEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGT---EDGVVEFWDPRDKSRV 210 (703)
T ss_pred ccccccCCCccEEEeecC---cceEEEEccccccccccccccccceeeeecCccceEEecc---cCceEEEecchhhhhh
Confidence 456665 44455555323 357777774 3333334 568899999999999999998 8999999999887666
Q ss_pred EeeeCC-------------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc--eeEEeccC--ceEEEEEecC--
Q 020756 162 GTTRAE-------------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS--LFFKKMFD--KLFQAEWKPV-- 222 (321)
Q Consensus 162 ~~~~~~-------------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~--~l~~~~~~--~~~~~~w~P~-- 222 (321)
.++... .++.+.|+-||-+++++++ ++.+.|||+... ++.+.|.. .+..+.|.+.
T Consensus 211 ~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts------~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~ 284 (703)
T KOG2321|consen 211 GTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS------TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQ 284 (703)
T ss_pred eeeecccccCCCccccccCcceEEEecCCceeEEeecc------CCcEEEEEcccCCceeecccCCccceeeecccccCC
Confidence 555432 3788999999999999996 899999999543 33443433 6778899875
Q ss_pred CCCCCCCcchhhhcc
Q 020756 223 SPDKFGDISELIKSV 237 (321)
Q Consensus 223 ~~~~~~~~~~~~~~~ 237 (321)
.+.+++....+.+.|
T Consensus 285 q~~v~S~Dk~~~kiW 299 (703)
T KOG2321|consen 285 QNKVVSMDKRILKIW 299 (703)
T ss_pred CceEEecchHHhhhc
Confidence 455666555555544
No 242
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=98.44 E-value=1.7e-06 Score=83.61 Aligned_cols=115 Identities=17% Similarity=0.302 Sum_probs=81.5
Q ss_pred ecCCCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeCCCceeE----Ee-CCcCeeeEEEcCCCCeEEEEccCCCCCcEE
Q 020756 78 PLRKEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKKCRPIL----EL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMA 151 (321)
Q Consensus 78 ~l~~~~~v~~~~wsP~g~-~l~~~~g~~~~~i~i~d~~~~~~~----~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~ 151 (321)
.+-|...|.|+.|-| |+ .|+.+ ..|.++++||+++..+. .+ |.+.+.+++|.|+...+++.|+ .||.|.
T Consensus 96 ~~aH~nAifDl~wap-ge~~lVsa--sGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGg--RDg~il 170 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAP-GESLLVSA--SGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGG--RDGEIL 170 (720)
T ss_pred cccccceeEeeccCC-CceeEEEc--cCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeecc--CCCcEE
Confidence 345899999999999 55 44444 44779999999654222 22 7889999999998876655542 779999
Q ss_pred EEECCCCe---------------------------EEEeeeCC--Ceee---EEEccCCCEEEEEEcCCceeecCcEEEE
Q 020756 152 FWDYVDGK---------------------------QLGTTRAE--CSVT---SEWSPDGRYFMTATTAPRLQIDNGIKIF 199 (321)
Q Consensus 152 iwD~~~~~---------------------------~i~~~~~~--~~~~---~~wSpdG~~l~t~~s~~rl~~d~~v~iw 199 (321)
|||++-.. .+....++ .+.. +-+.-|..+||+++. .|..+++|
T Consensus 171 lWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga-----~D~~iKVW 245 (720)
T KOG0321|consen 171 LWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGA-----ADSTIKVW 245 (720)
T ss_pred EEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccC-----CCcceEEE
Confidence 99986321 01111111 2222 567789999999996 59999999
Q ss_pred eec
Q 020756 200 HHN 202 (321)
Q Consensus 200 ~~~ 202 (321)
|+.
T Consensus 246 DLR 248 (720)
T KOG0321|consen 246 DLR 248 (720)
T ss_pred eec
Confidence 994
No 243
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=98.44 E-value=1e-05 Score=79.71 Aligned_cols=191 Identities=15% Similarity=0.188 Sum_probs=122.5
Q ss_pred ccceEEeCCCCCe--eEEEEEecccCCC----ceeecce--eEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEE
Q 020756 30 STVQLNWNRGSTG--LLAVAQSDVDKTN----QSYYGES--KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVY 101 (321)
Q Consensus 30 ~~~~~~Wsp~G~~--l~~~~~~d~d~t~----~s~~g~~--~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~ 101 (321)
-...+.|+|++.- ...++-.+.+... +..+... .+++++..........+.-..+|.++.|+|....+++.
T Consensus 182 ~~~~~~w~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~g- 260 (555)
T KOG1587|consen 182 QVTDESWHPTGSVLIAVSVAYSELDFDRYAFNKPLLSEPDGVLLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAG- 260 (555)
T ss_pred ceeeeeeccCCCcceEEEEeecccccccccccccccccCCceEEEEecCCCCCceEEEecCCceeEEEeccCCcceEEe-
Confidence 3457889998883 2222222211111 1111121 36666665544455555678899999999988777775
Q ss_pred ccCCCeEEEEeCCCce---eEEe------CCcCeeeEEEcCCCCe--EEEEccCCCCCcEEEEECCCCeE----------
Q 020756 102 GFMPASATIFNKKCRP---ILEL------GSGPYNTVRWNPKGKF--LCLAGFGNLPGDMAFWDYVDGKQ---------- 160 (321)
Q Consensus 102 g~~~~~i~i~d~~~~~---~~~~------~~~~~~~~~~sPdG~~--l~~~g~~n~~g~i~iwD~~~~~~---------- 160 (321)
|.-.|.|.+||++... ...+ |..++..+.|-.+-.- +++++ .||.|..|+++...+
T Consensus 261 G~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s---sDG~i~~W~~~~l~~P~e~~~~~~~ 337 (555)
T KOG1587|consen 261 GCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS---SDGSICSWDTDMLSLPVEGLLLESK 337 (555)
T ss_pred eccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe---cCCcEeeeeccccccchhhcccccc
Confidence 6778899999995432 2111 6788999999875444 78887 799999998774110
Q ss_pred ----------------------------------EE-------------------eeeCC--CeeeEEEccCCCEEEEEE
Q 020756 161 ----------------------------------LG-------------------TTRAE--CSVTSEWSPDGRYFMTAT 185 (321)
Q Consensus 161 ----------------------------------i~-------------------~~~~~--~~~~~~wSpdG~~l~t~~ 185 (321)
+. .+..| .+..+.++|=+..+.+++
T Consensus 338 ~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~ 417 (555)
T KOG1587|consen 338 KHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSV 417 (555)
T ss_pred cccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeee
Confidence 00 00011 445577888766666666
Q ss_pred cCCceeecCcEEEEeec--Ccee--EEeccCceEEEEEecCCCCCCCCc
Q 020756 186 TAPRLQIDNGIKIFHHN--GSLF--FKKMFDKLFQAEWKPVSPDKFGDI 230 (321)
Q Consensus 186 s~~rl~~d~~v~iw~~~--g~~l--~~~~~~~~~~~~w~P~~~~~~~~~ 230 (321)
. |-+++||+-. ...+ +..+...|.+++|+|..+.+|...
T Consensus 418 g------DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~ 460 (555)
T KOG1587|consen 418 G------DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV 460 (555)
T ss_pred c------cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE
Confidence 3 8999999864 2233 444556799999999999888653
No 244
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.42 E-value=4.1e-07 Score=84.91 Aligned_cols=172 Identities=12% Similarity=0.165 Sum_probs=124.2
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK 81 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~ 81 (321)
|.-|.|..++..+ .+.....+.. ..+.++.|-.+-+++++.. +. .+|..+-+|. ...-+..
T Consensus 148 GrKGHlAa~Dw~t---~~L~~Ei~v~-Etv~Dv~~LHneq~~AVAQ--------K~-----y~yvYD~~Gt--ElHClk~ 208 (545)
T KOG1272|consen 148 GRKGHLAAFDWVT---KKLHFEINVM-ETVRDVTFLHNEQFFAVAQ--------KK-----YVYVYDNNGT--ELHCLKR 208 (545)
T ss_pred CCccceeeeeccc---ceeeeeeehh-hhhhhhhhhcchHHHHhhh--------hc-----eEEEecCCCc--EEeehhh
Confidence 4567777777777 4444444433 3455778888888888752 22 2455555553 3333445
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 158 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~ 158 (321)
...|..+.|-|.-=.|+. .++.+-+..-|+. ++.+..+ +.+....+.-+|-...|-++. ..|+|.+|.....
T Consensus 209 ~~~v~rLeFLPyHfLL~~--~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Gh---snGtVSlWSP~sk 283 (545)
T KOG1272|consen 209 HIRVARLEFLPYHFLLVA--ASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGH---SNGTVSLWSPNSK 283 (545)
T ss_pred cCchhhhcccchhheeee--cccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcC---CCceEEecCCCCc
Confidence 678888999997533433 5777888888984 5566666 677788889999888888877 7899999999888
Q ss_pred eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756 159 KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 203 (321)
Q Consensus 159 ~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g 203 (321)
+.+..+-.| .+..+++.++|+|++|++ .|+.++|||+..
T Consensus 284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG------~Dr~~kIWDlR~ 324 (545)
T KOG1272|consen 284 EPLVKILCHRGPVSSIAVDRGGRYMATTG------LDRKVKIWDLRN 324 (545)
T ss_pred chHHHHHhcCCCcceEEECCCCcEEeecc------cccceeEeeecc
Confidence 766555454 788999999999999999 599999999953
No 245
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.40 E-value=1.4e-05 Score=75.29 Aligned_cols=142 Identities=19% Similarity=0.279 Sum_probs=85.5
Q ss_pred CCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc
Q 020756 37 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR 116 (321)
Q Consensus 37 sp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~ 116 (321)
||||+++++.... ....-.++.+ .+|+.++.......+... ...+..+.|||+|+.++++.+ +.|.+.+..+.
T Consensus 1 S~d~~~~l~~~~~-~~~~r~s~~~--~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~~---~nly~~~~~~~ 73 (353)
T PF00930_consen 1 SPDGKFVLFATNY-TKQWRHSFKG--DYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVRD---NNLYLRDLATG 73 (353)
T ss_dssp -TTSSEEEEEEEE-EEESSSEEEE--EEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEET---TEEEEESSTTS
T ss_pred CCCCCeEEEEECc-EEeeeeccce--eEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEec---CceEEEECCCC
Confidence 7999999986432 1222233333 466777766544443322 578999999999999999854 47999987554
Q ss_pred eeEEe---C-----------------CcCeeeEEEcCCCCeEEEEccC--------------------------------
Q 020756 117 PILEL---G-----------------SGPYNTVRWNPKGKFLCLAGFG-------------------------------- 144 (321)
Q Consensus 117 ~~~~~---~-----------------~~~~~~~~~sPdG~~l~~~g~~-------------------------------- 144 (321)
....+ + -.....+.|||||++|++.-+.
T Consensus 74 ~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~ 153 (353)
T PF00930_consen 74 QETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGD 153 (353)
T ss_dssp EEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS
T ss_pred CeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCC
Confidence 44433 2 1234678999999999997431
Q ss_pred -CCCCcEEEEECCCCeE--EEee-----eCCCeeeEEEccCCCEEEEEE
Q 020756 145 -NLPGDMAFWDYVDGKQ--LGTT-----RAECSVTSEWSPDGRYFMTAT 185 (321)
Q Consensus 145 -n~~g~i~iwD~~~~~~--i~~~-----~~~~~~~~~wSpdG~~l~t~~ 185 (321)
|-.-.+.|+|+.+++. +... ....+..+.|++|++.|+...
T Consensus 154 ~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~ 202 (353)
T PF00930_consen 154 PNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQW 202 (353)
T ss_dssp ---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEE
T ss_pred cCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEE
Confidence 1112355577776643 2222 112677799999999444433
No 246
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.39 E-value=1.2e-06 Score=81.97 Aligned_cols=148 Identities=15% Similarity=0.264 Sum_probs=101.8
Q ss_pred EEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCCCCeEEE
Q 020756 64 LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPKGKFLCL 140 (321)
Q Consensus 64 l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPdG~~l~~ 140 (321)
|.+.++..+....--....+.+..+.=+|-.-.+.+ |-..|++.+|.-.. +++..+ |.+++++|++.|+|+++++
T Consensus 233 L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~--GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaT 310 (545)
T KOG1272|consen 233 LKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHL--GHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMAT 310 (545)
T ss_pred eEEEeechhhhhHHHHccCCccchhhcCCccceEEE--cCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEee
Confidence 455555443211111124577777888887765555 66778999998743 344444 8999999999999999999
Q ss_pred EccCCCCCcEEEEECCCCeEEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee--cCc----eeEEec--c
Q 020756 141 AGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH--NGS----LFFKKM--F 211 (321)
Q Consensus 141 ~g~~n~~g~i~iwD~~~~~~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~--~g~----~l~~~~--~ 211 (321)
+| +|..|.|||+++...+.++.. +....+++|..|- ||.+. ...+.||.= .|. ..|-.| .
T Consensus 311 tG---~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkgl-LA~~~-------G~~v~iw~d~~~~s~~~~~pYm~H~~~ 379 (545)
T KOG1272|consen 311 TG---LDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKGL-LALSY-------GDHVQIWKDALKGSGHGETPYMNHRCG 379 (545)
T ss_pred cc---cccceeEeeeccccccceeecCCCccccccccccc-eeeec-------CCeeeeehhhhcCCCCCCcchhhhccC
Confidence 99 999999999998877666655 4677788988875 44444 678999963 211 112222 2
Q ss_pred CceEEEEEecCCC
Q 020756 212 DKLFQAEWKPVSP 224 (321)
Q Consensus 212 ~~~~~~~w~P~~~ 224 (321)
..|.++.|.|...
T Consensus 380 ~~V~~l~FcP~ED 392 (545)
T KOG1272|consen 380 GPVEDLRFCPYED 392 (545)
T ss_pred cccccceeccHHH
Confidence 3677888888543
No 247
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.37 E-value=1.2e-06 Score=92.93 Aligned_cols=171 Identities=16% Similarity=0.198 Sum_probs=122.8
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK 81 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~ 81 (321)
++.|+|++|..... .+.+.-++..++.+..+.++.+|+...+. |-.|. |-++++.-. ...--.-|
T Consensus 2227 s~dgsv~~~~w~~~--~~v~~~rt~g~s~vtr~~f~~qGnk~~i~-----d~dg~-------l~l~q~~pk-~~~s~qch 2291 (2439)
T KOG1064|consen 2227 SQDGSVRMFEWGHG--QQVVCFRTAGNSRVTRSRFNHQGNKFGIV-----DGDGD-------LSLWQASPK-PYTSWQCH 2291 (2439)
T ss_pred CCCceEEEEeccCC--CeEEEeeccCcchhhhhhhcccCCceeee-----ccCCc-------eeecccCCc-ceeccccC
Confidence 57899999999883 45567777888888899999999998774 22222 223332211 11111125
Q ss_pred CCCeEEEEECcCCCEEEEEE-ccCCCeEEEEeCC----CceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756 82 EGPVHDVQWSYSGSEFAVVY-GFMPASATIFNKK----CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 156 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~-g~~~~~i~i~d~~----~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~ 156 (321)
....+|+.|=- ..++... ...++.+.+||.- .-.+++-|.+.+.+++|-|.-+.|+++| .+|.|++||++
T Consensus 2292 nk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg---r~G~v~l~D~r 2366 (2439)
T KOG1064|consen 2292 NKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG---RKGEVCLFDIR 2366 (2439)
T ss_pred Cccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC---CcCcEEEeehH
Confidence 66778888865 3455542 2334589999973 2355666999999999999999999999 99999999999
Q ss_pred CCeEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee
Q 020756 157 DGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF 206 (321)
Q Consensus 157 ~~~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l 206 (321)
..++++++.. |. .-.+|+++++ .+.++||++++-.+
T Consensus 2367 qrql~h~~~~-------~~-~~~~f~~~ss------~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2367 QRQLRHTFQA-------LD-TREYFVTGSS------EGNIKIWRLSEFGL 2402 (2439)
T ss_pred HHHHHHHhhh-------hh-hhheeeccCc------ccceEEEEccccch
Confidence 8888777765 55 5678888885 89999999986543
No 248
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.36 E-value=2.5e-05 Score=75.49 Aligned_cols=123 Identities=10% Similarity=0.179 Sum_probs=85.1
Q ss_pred cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC-ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCC
Q 020756 28 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA 106 (321)
Q Consensus 28 ~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~ 106 (321)
..+...+.||....+.+..+...+...|... -+..+|-+..+.. ......+.....|.+++++|+.+.|++ |+.|+
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~-~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvl--GC~Dg 281 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPS-ADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVL--GCEDG 281 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCce-eEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEE--EecCC
Confidence 3566788888766666665443333334331 1233454443321 112233456789999999999999999 68899
Q ss_pred eEEEEeCCCceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756 107 SATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 156 (321)
Q Consensus 107 ~i~i~d~~~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~ 156 (321)
.+.+||......... ..-..+.++|+|+|..+++++ ..|.|.+||+.
T Consensus 282 SiiLyD~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s---~qGelQ~FD~A 329 (545)
T PF11768_consen 282 SIILYDTTRGVTLLAKAEFIPTLIAWHPDGAIFVVGS---EQGELQCFDMA 329 (545)
T ss_pred eEEEEEcCCCeeeeeeecccceEEEEcCCCcEEEEEc---CCceEEEEEee
Confidence 999999866533333 344567899999999999998 88999999976
No 249
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.34 E-value=5.1e-05 Score=75.89 Aligned_cols=131 Identities=13% Similarity=0.153 Sum_probs=93.3
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEE-------eCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756 85 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-------LGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 157 (321)
Q Consensus 85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~-------~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~ 157 (321)
-..+..++.|..+.++.. ..+.+|+...+..+. .|.-.+++.++||++++++++. .+|.|.+|.--.
T Consensus 163 ~~~I~~~~~ge~~~i~~~---~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d---~dGrI~vw~d~~ 236 (792)
T KOG1963|consen 163 PKSIVDNNSGEFKGIVHM---CKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGD---SDGRILVWRDFG 236 (792)
T ss_pred CccEEEcCCceEEEEEEe---eeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEec---cCCcEEEEeccc
Confidence 356888999988888643 367788764321111 1555688999999999999998 899999995322
Q ss_pred --C--eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Cc-eeEEeccCceEEEEEecCCCCCC
Q 020756 158 --G--KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GS-LFFKKMFDKLFQAEWKPVSPDKF 227 (321)
Q Consensus 158 --~--~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~-~l~~~~~~~~~~~~w~P~~~~~~ 227 (321)
. ...+.+.-| .+.++.||+||.+|++|+ ..+-+.+|.+. ++ .+...--..+..+.|+||+....
T Consensus 237 ~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG------~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~s 308 (792)
T KOG1963|consen 237 SSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG------REGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYS 308 (792)
T ss_pred cccccccceEEEecccccceeEEecCCceEeecc------cceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEE
Confidence 2 112223323 899999999999999999 47888999983 33 33444446788999999876433
No 250
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.32 E-value=3.3e-05 Score=81.01 Aligned_cols=189 Identities=16% Similarity=0.290 Sum_probs=115.5
Q ss_pred ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC------CCCCeEEEEECcCCCEEEEEEcc
Q 020756 30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR------KEGPVHDVQWSYSGSEFAVVYGF 103 (321)
Q Consensus 30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~------~~~~v~~~~wsP~g~~l~~~~g~ 103 (321)
......|....+.++++... +... ....+......+.......++ ..+.|.++.+-++...++++ .
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~----~~~~--~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~--~ 94 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGP----NEID--YVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIA--L 94 (928)
T ss_pred ccceEEEecCCCeEEEEECC----CCcc--eEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEE--E
Confidence 34566788877777776421 1110 111222222222112222322 34689999999999999987 4
Q ss_pred CCCeEEEE----eCCCceeEEeC--CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC----C----------------
Q 020756 104 MPASATIF----NKKCRPILELG--SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV----D---------------- 157 (321)
Q Consensus 104 ~~~~i~i~----d~~~~~~~~~~--~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~----~---------------- 157 (321)
..|.|.++ |.....+-..+ ...+.+.+||||+..|++.. .+++|.+.+.+ .
T Consensus 95 ~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT---~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~Vs 171 (928)
T PF04762_consen 95 ASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVT---GEGNLLLMTRDFDPISEVPLDSDDFGESKHVS 171 (928)
T ss_pred CCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEe---CCCEEEEEeccceEEEEeecCccccCCCceee
Confidence 46778877 54443333332 67899999999999999987 66777765432 0
Q ss_pred ---CeEEEeeeC--------------------------CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE
Q 020756 158 ---GKQLGTTRA--------------------------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK 208 (321)
Q Consensus 158 ---~~~i~~~~~--------------------------~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~ 208 (321)
|++-+.|.+ ..-..++|-.||+|||+.+-.+-......++||+-.|.+...
T Consensus 172 VGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~st 251 (928)
T PF04762_consen 172 VGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQST 251 (928)
T ss_pred eccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEec
Confidence 111111110 023458999999999998843222123579999999987743
Q ss_pred -eccCce-EEEEEecCCCCCCCC
Q 020756 209 -KMFDKL-FQAEWKPVSPDKFGD 229 (321)
Q Consensus 209 -~~~~~~-~~~~w~P~~~~~~~~ 229 (321)
+..+.+ ..++|+|.+..|.+.
T Consensus 252 SE~v~gLe~~l~WrPsG~lIA~~ 274 (928)
T PF04762_consen 252 SEPVDGLEGALSWRPSGNLIASS 274 (928)
T ss_pred cccCCCccCCccCCCCCCEEEEE
Confidence 333333 358999999877654
No 251
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=98.29 E-value=0.00012 Score=63.71 Aligned_cols=153 Identities=10% Similarity=0.142 Sum_probs=106.5
Q ss_pred cceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEeC---Cc---------Ce
Q 020756 60 GESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILELG---SG---------PY 126 (321)
Q Consensus 60 g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~~---~~---------~~ 126 (321)
|...+|.+++..+..++.-..|.+.||++.--....++.. |.+|++++|||.++. .+..++ +. .+
T Consensus 134 GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qils--G~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi 211 (325)
T KOG0649|consen 134 GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILS--GAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI 211 (325)
T ss_pred CCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceee--cCCCccEEEEeccccceeEEeccccChhhcCcccCcee
Confidence 5667899999877777777789999999998444445555 799999999999653 444441 11 12
Q ss_pred eeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce
Q 020756 127 NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 205 (321)
Q Consensus 127 ~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~ 205 (321)
.+++- +...|+.++ ...+.+|.+++.++.+.+.-+ .+..+.|--| .++.++ ..+.+.-|.++|.+
T Consensus 212 gala~--~edWlvCGg----Gp~lslwhLrsse~t~vfpipa~v~~v~F~~d--~vl~~G------~g~~v~~~~l~Gvl 277 (325)
T KOG0649|consen 212 GALAV--NEDWLVCGG----GPKLSLWHLRSSESTCVFPIPARVHLVDFVDD--CVLIGG------EGNHVQSYTLNGVL 277 (325)
T ss_pred EEEec--cCceEEecC----CCceeEEeccCCCceEEEecccceeEeeeecc--eEEEec------cccceeeeeeccEE
Confidence 33333 345666654 357999999999888888765 5556666544 455555 37899999999987
Q ss_pred eEEec--cCceEEEEEecCCCCCCC
Q 020756 206 FFKKM--FDKLFQAEWKPVSPDKFG 228 (321)
Q Consensus 206 l~~~~--~~~~~~~~w~P~~~~~~~ 228 (321)
-.... ...++..+|+-.+-.+++
T Consensus 278 ~a~ip~~s~~c~s~s~~~~p~k~~s 302 (325)
T KOG0649|consen 278 QANIPVESTACYSASWQTSPIKFIS 302 (325)
T ss_pred EEeccCCccceeeecccCCceEEEE
Confidence 74443 346888999877644443
No 252
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.29 E-value=6e-06 Score=78.79 Aligned_cols=139 Identities=14% Similarity=0.205 Sum_probs=99.7
Q ss_pred CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeC-CCceeEEe---CCcCeeeEEEcCC--CCeEEEEccCCCCCcEEEE
Q 020756 80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL---GSGPYNTVRWNPK--GKFLCLAGFGNLPGDMAFW 153 (321)
Q Consensus 80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~~~~---~~~~~~~~~~sPd--G~~l~~~g~~n~~g~i~iw 153 (321)
.|.|-|+++.|+-+|..|+. |..|..+.|||. ..++++.+ |.+.|.++.|-|. .+.|+++. .|..|+++
T Consensus 48 GH~GCVN~LeWn~dG~lL~S--GSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA---gDk~i~lf 122 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLAS--GSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA---GDKLIKLF 122 (758)
T ss_pred cccceecceeecCCCCEEee--cCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc---CcceEEEE
Confidence 58999999999999999888 788889999997 55666666 6788999999995 34555555 67899999
Q ss_pred ECCCCe----------EEEeeeCC--CeeeEEEccCC-CEEEEEEcCCceeecCcEEEEeecCcee-------------E
Q 020756 154 DYVDGK----------QLGTTRAE--CSVTSEWSPDG-RYFMTATTAPRLQIDNGIKIFHHNGSLF-------------F 207 (321)
Q Consensus 154 D~~~~~----------~i~~~~~~--~~~~~~wSpdG-~~l~t~~s~~rl~~d~~v~iw~~~g~~l-------------~ 207 (321)
|+...+ .+..+..| .+-.++-.|+| ..+.+++ .|++++-+|+..... +
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Phtfwsas------EDGtirQyDiREph~c~p~~~~~~~l~ny 196 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSAS------EDGTIRQYDIREPHVCNPDEDCPSILVNY 196 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEec------CCcceeeecccCCccCCccccccHHHHHh
Confidence 998532 11112222 34457788898 5555565 599999999954211 1
Q ss_pred EeccCceEEEEEecCCCCCCCC
Q 020756 208 KKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 208 ~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
....-+++.+.-+|..+..+.-
T Consensus 197 ~~~lielk~ltisp~rp~~laV 218 (758)
T KOG1310|consen 197 NPQLIELKCLTISPSRPYYLAV 218 (758)
T ss_pred chhhheeeeeeecCCCCceEEe
Confidence 1222477888999988877643
No 253
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.27 E-value=0.0002 Score=69.32 Aligned_cols=162 Identities=19% Similarity=0.217 Sum_probs=104.3
Q ss_pred cceEEeCCCCCeeEEEEEec---ccCCCc--eeecceeEEEEEcCCCc-eeeeecCCCCCeEEEEECc-CCCEEEEEEc-
Q 020756 31 TVQLNWNRGSTGLLAVAQSD---VDKTNQ--SYYGESKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSY-SGSEFAVVYG- 102 (321)
Q Consensus 31 ~~~~~Wsp~G~~l~~~~~~d---~d~t~~--s~~g~~~l~~l~~~g~~-~~~v~l~~~~~v~~~~wsP-~g~~l~~~~g- 102 (321)
...+.||+..+.+++=-... +-.... .-+...++.++...+.. +....+..+....++.||- +..++.++.-
T Consensus 148 ~r~l~~N~~qDl~ivWW~~~~~e~~PWsP~~~e~draNl~L~~~~~~klEvL~yirTE~dPl~~~Fs~~~~~qi~tVE~s 227 (545)
T PF11768_consen 148 ERHLSVNSSQDLVIVWWPSAQDEVWPWSPISSEKDRANLHLLSCSGGKLEVLSYIRTENDPLDVEFSLNQPYQIHTVEQS 227 (545)
T ss_pred ceeEeeccCCCEEEEEecCCCCCcCCCCCccccchhccEEEEEecCCcEEEEEEEEecCCcEEEEccCCCCcEEEEEEEe
Confidence 34566777766666542221 111111 11123367777776643 3333344566667899987 4445555421
Q ss_pred -----cCCCeEEEEeCCCcee-----EEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCCCeee
Q 020756 103 -----FMPASATIFNKKCRPI-----LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVT 171 (321)
Q Consensus 103 -----~~~~~i~i~d~~~~~~-----~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~~~~ 171 (321)
.......+|+...+.+ .++ -...+.+.++||+...|++|. .||.|.+||...+.....-..--.+.
T Consensus 228 ~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC---~DgSiiLyD~~~~~t~~~ka~~~P~~ 304 (545)
T PF11768_consen 228 ISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGC---EDGSIILYDTTRGVTLLAKAEFIPTL 304 (545)
T ss_pred cCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEe---cCCeEEEEEcCCCeeeeeeecccceE
Confidence 1112566788743322 334 467899999999999999999 99999999997763333222226778
Q ss_pred EEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756 172 SEWSPDGRYFMTATTAPRLQIDNGIKIFHH 201 (321)
Q Consensus 172 ~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~ 201 (321)
++|+|+|..|++++. .+.+.+||.
T Consensus 305 iaWHp~gai~~V~s~------qGelQ~FD~ 328 (545)
T PF11768_consen 305 IAWHPDGAIFVVGSE------QGELQCFDM 328 (545)
T ss_pred EEEcCCCcEEEEEcC------CceEEEEEe
Confidence 999999999999994 788999998
No 254
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=98.24 E-value=2.2e-05 Score=80.05 Aligned_cols=171 Identities=14% Similarity=0.188 Sum_probs=110.4
Q ss_pred ceEEeCCCCCeeEEEEEecccCCCceeeccee-EEEEEcCCCc-eeeeecCCCCCeEEEEECc-CCCEEEEEEccCCCeE
Q 020756 32 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESK-LNYLTTDGTH-EGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFMPASA 108 (321)
Q Consensus 32 ~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~-l~~l~~~g~~-~~~v~l~~~~~v~~~~wsP-~g~~l~~~~g~~~~~i 108 (321)
+.+.|..+..+|++. |+.. +-+|+..... ...++...+.-|+.+.=+- .|+.|+. |+.||.+
T Consensus 1169 ~v~dWqQ~~G~Ll~t-------------Gd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~A--GfaDGsv 1233 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVT-------------GDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAA--GFADGSV 1233 (1387)
T ss_pred eeeehhhhCCeEEec-------------CCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEE--eecCCce
Confidence 667777777776664 3222 3344444431 2234444455566555443 4566665 8889999
Q ss_pred EEEeCCCcee----EEe--CCcC--eeeEEEcCCCC-eEEEEccCCCCCcEEEEECCCCeEE------EeeeCC-CeeeE
Q 020756 109 TIFNKKCRPI----LEL--GSGP--YNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQL------GTTRAE-CSVTS 172 (321)
Q Consensus 109 ~i~d~~~~~~----~~~--~~~~--~~~~~~sPdG~-~l~~~g~~n~~g~i~iwD~~~~~~i------~~~~~~-~~~~~ 172 (321)
.+||.+..+. ... |... |..+.+.+.|- .|++++ .+|.|++||++..... ...+.. ..+.+
T Consensus 1234 RvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs---~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal 1310 (1387)
T KOG1517|consen 1234 RVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGS---QDGDIQLLDLRMSSKETFLTIVAHWEYGSALTAL 1310 (1387)
T ss_pred EEeecccCCccccceeecccCCcccceeEEeecCCCcceeeec---cCCeEEEEecccCcccccceeeeccccCccceee
Confidence 9999975432 222 5444 88899988765 488887 8999999999863221 212222 47889
Q ss_pred EEccCCCEEEEEEcCCceeecCcEEEEeecCceeE--Ee-------ccCceEEEEEecCCCCCC
Q 020756 173 EWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFF--KK-------MFDKLFQAEWKPVSPDKF 227 (321)
Q Consensus 173 ~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~--~~-------~~~~~~~~~w~P~~~~~~ 227 (321)
..+++...||+|+ -..++||++.|+++. +. ....+..+.|||....+.
T Consensus 1311 ~VH~hapiiAsGs-------~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llA 1367 (1387)
T KOG1517|consen 1311 TVHEHAPIIASGS-------AQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLA 1367 (1387)
T ss_pred eeccCCCeeeecC-------cceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhh
Confidence 9999999999999 488999999998772 21 122456677777654444
No 255
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.22 E-value=0.00024 Score=66.91 Aligned_cols=201 Identities=14% Similarity=0.108 Sum_probs=111.3
Q ss_pred ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC---
Q 020756 5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK--- 81 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~--- 81 (321)
+.+-||++.+ +.+....-.........|||+|++++++. ..+||+.+..+....+++.+-
T Consensus 23 ~~y~i~d~~~----~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-------------~~nly~~~~~~~~~~~lT~dg~~~ 85 (353)
T PF00930_consen 23 GDYYIYDIET----GEITPLTPPPPKLQDAKWSPDGKYIAFVR-------------DNNLYLRDLATGQETQLTTDGEPG 85 (353)
T ss_dssp EEEEEEETTT----TEEEESS-EETTBSEEEE-SSSTEEEEEE-------------TTEEEEESSTTSEEEESES--TTT
T ss_pred eeEEEEecCC----CceEECcCCccccccceeecCCCeeEEEe-------------cCceEEEECCCCCeEEecccccee
Confidence 4567888877 22333332256778899999999999973 235777776555455554322
Q ss_pred --------------CCCeEEEEECcCCCEEEEEEccCC--------------------------------C--eEEEEeC
Q 020756 82 --------------EGPVHDVQWSYSGSEFAVVYGFMP--------------------------------A--SATIFNK 113 (321)
Q Consensus 82 --------------~~~v~~~~wsP~g~~l~~~~g~~~--------------------------------~--~i~i~d~ 113 (321)
-+.-..+-|||||++|++..-++. . .+.|+|+
T Consensus 86 i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~ 165 (353)
T PF00930_consen 86 IYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDL 165 (353)
T ss_dssp EEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEES
T ss_pred EEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEEC
Confidence 123457889999999988631110 0 2334565
Q ss_pred CCceeEEe--------CCcCeeeEEEcCCCCeEEE-EccC-CCCCcEEEEECCCCeE--EEeeeCC-C---eeeEEEc-c
Q 020756 114 KCRPILEL--------GSGPYNTVRWNPKGKFLCL-AGFG-NLPGDMAFWDYVDGKQ--LGTTRAE-C---SVTSEWS-P 176 (321)
Q Consensus 114 ~~~~~~~~--------~~~~~~~~~~sPdG~~l~~-~g~~-n~~g~i~iwD~~~~~~--i~~~~~~-~---~~~~~wS-p 176 (321)
.+..+..+ ....+..+.|+++++.|++ -..+ .....+.+.|..++++ +...... . ...+.|. +
T Consensus 166 ~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~ 245 (353)
T PF00930_consen 166 ASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGP 245 (353)
T ss_dssp SSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TT
T ss_pred CCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccC
Confidence 44433222 2234567999999994444 3321 1234677788877632 3322222 1 2235554 8
Q ss_pred CCCEEEEEEcCCceeecCcEEEEe--ecCceeEEecc--Cce-EEEEEecCCCCCC
Q 020756 177 DGRYFMTATTAPRLQIDNGIKIFH--HNGSLFFKKMF--DKL-FQAEWKPVSPDKF 227 (321)
Q Consensus 177 dG~~l~t~~s~~rl~~d~~v~iw~--~~g~~l~~~~~--~~~-~~~~w~P~~~~~~ 227 (321)
+|..++..+. .++--+||- .+|........ -+| .-+.|.++...+|
T Consensus 246 ~~~~~l~~s~-----~~G~~hly~~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iy 296 (353)
T PF00930_consen 246 DGNEFLWISE-----RDGYRHLYLYDLDGGKPRQLTSGDWEVTSILGWDEDNNRIY 296 (353)
T ss_dssp TSSEEEEEEE-----TTSSEEEEEEETTSSEEEESS-SSS-EEEEEEEECTSSEEE
T ss_pred CCCEEEEEEE-----cCCCcEEEEEcccccceeccccCceeecccceEcCCCCEEE
Confidence 8888887775 255555554 45655432222 234 4578888776655
No 256
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.21 E-value=8.4e-05 Score=70.07 Aligned_cols=119 Identities=18% Similarity=0.320 Sum_probs=86.2
Q ss_pred EEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEE
Q 020756 64 LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCL 140 (321)
Q Consensus 64 l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~ 140 (321)
|-..+..+...+++. ..-+-|.++.-+|+|+.+++. +....+.++|+++..+..+ ..+-+..+.|||++++|+.
T Consensus 384 l~iyd~~~~e~kr~e-~~lg~I~av~vs~dGK~~vva--Ndr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAY 460 (668)
T COG4946 384 LGIYDKDGGEVKRIE-KDLGNIEAVKVSPDGKKVVVA--NDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAY 460 (668)
T ss_pred EEEEecCCceEEEee-CCccceEEEEEcCCCcEEEEE--cCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEE
Confidence 444455554323332 345789999999999998884 5455888889987777666 3567899999999999999
Q ss_pred Ecc-CCCCCcEEEEECCCCeEEEeeeC-CCeeeEEEccCCCEEEEEE
Q 020756 141 AGF-GNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTAT 185 (321)
Q Consensus 141 ~g~-~n~~g~i~iwD~~~~~~i~~~~~-~~~~~~~wSpdG~~l~t~~ 185 (321)
+-. |.....|+++|+.+++....... ..-...+|.|||++|..-+
T Consensus 461 afP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 461 AFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence 743 22457899999988876554332 2445678999999988655
No 257
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.21 E-value=0.0011 Score=58.94 Aligned_cols=138 Identities=17% Similarity=0.179 Sum_probs=89.0
Q ss_pred CCCeEEEEECcCCCEEEEEEccCC------CeEEEEeCCCceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEE
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMP------ASATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD 154 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~------~~i~i~d~~~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD 154 (321)
....++++++|+|+..+...+... +.+..++..+...... +-...|.++|+|||+.|.++.. ..+.|+.+|
T Consensus 85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds--~~~~i~~~~ 162 (246)
T PF08450_consen 85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADS--FNGRIWRFD 162 (246)
T ss_dssp TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEET--TTTEEEEEE
T ss_pred cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeeccc--ccceeEEEe
Confidence 346789999999996666433221 4577777773322222 3456789999999998877653 457899999
Q ss_pred CCC--C-----eEEEeeeCCC--eeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe--ccCceEEEEEe-cC
Q 020756 155 YVD--G-----KQLGTTRAEC--SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK--MFDKLFQAEWK-PV 222 (321)
Q Consensus 155 ~~~--~-----~~i~~~~~~~--~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~--~~~~~~~~~w~-P~ 222 (321)
++. . +.+..+.... .-.+++..+|+..++... .+.|.+++-+|+++... ....+.+++|- |+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~------~~~I~~~~p~G~~~~~i~~p~~~~t~~~fgg~~ 236 (246)
T PF08450_consen 163 LDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG------GGRIVVFDPDGKLLREIELPVPRPTNCAFGGPD 236 (246)
T ss_dssp EETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET------TTEEEEEETTSCEEEEEE-SSSSEEEEEEESTT
T ss_pred ccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC------CCEEEEECCCccEEEEEcCCCCCEEEEEEECCC
Confidence 863 2 1222222322 456999999997776663 78999999999988544 33578888884 44
Q ss_pred CCCCC
Q 020756 223 SPDKF 227 (321)
Q Consensus 223 ~~~~~ 227 (321)
...||
T Consensus 237 ~~~L~ 241 (246)
T PF08450_consen 237 GKTLY 241 (246)
T ss_dssp SSEEE
T ss_pred CCEEE
Confidence 34333
No 258
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=98.19 E-value=1.4e-05 Score=81.16 Aligned_cols=127 Identities=16% Similarity=0.140 Sum_probs=99.4
Q ss_pred EEEEEcCCCceeee-ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCcee---EEe-CCcCeeeEEEcCCCCeE
Q 020756 64 LNYLTTDGTHEGLV-PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI---LEL-GSGPYNTVRWNPKGKFL 138 (321)
Q Consensus 64 l~~l~~~g~~~~~v-~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~---~~~-~~~~~~~~~~sPdG~~l 138 (321)
|+.+..... ...+ ...|++.|.++.|+-||++++++ .+|..+++|+++.... ..| |...+..+.|+|+ .|
T Consensus 157 iivW~~~~d-n~p~~l~GHeG~iF~i~~s~dg~~i~s~--SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i 231 (967)
T KOG0974|consen 157 IIVWKPHED-NKPIRLKGHEGSIFSIVTSLDGRYIASV--SDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RI 231 (967)
T ss_pred EEEEecccc-CCcceecccCCceEEEEEccCCcEEEEE--ecCcceeeeecccccccCcccccccceeEEEEeccc--ee
Confidence 444444433 2333 45699999999999999999998 6789999999965432 345 7889999999998 88
Q ss_pred EEEccCCCCCcEEEEECCCCeEEEeeeCC---CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce
Q 020756 139 CLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 205 (321)
Q Consensus 139 ~~~g~~n~~g~i~iwD~~~~~~i~~~~~~---~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~ 205 (321)
++.| .|.+..+|+. +++.+..+..| .+..+..+++.-.++|++. |+++++||+.+..
T Consensus 232 ~t~g---edctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~------Ds~lk~~~l~~r~ 291 (967)
T KOG0974|consen 232 ITVG---EDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGN------DSTLKLWDLNGRG 291 (967)
T ss_pred EEec---cceEEEEEec-ccceehhhhhhhhcceeEEEEcCCceEEEeecc------Ccchhhhhhhccc
Confidence 9998 8999999977 45555566666 6777888888888888884 9999999996643
No 259
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.18 E-value=3.8e-05 Score=73.51 Aligned_cols=183 Identities=13% Similarity=0.150 Sum_probs=124.6
Q ss_pred CCceEEEEEc---CCcC--CCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce---
Q 020756 3 SPASVQIYAC---GKDL--QSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE--- 74 (321)
Q Consensus 3 ~p~~v~v~~~---~~~~--~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~--- 74 (321)
..+.+.||++ ..-. .-++|.+...+++.+..+.-++.|..++... . .|...+|.+..+....
T Consensus 314 ed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg-~---------Dg~I~~w~~p~n~dp~ds~ 383 (577)
T KOG0642|consen 314 EDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG-I---------DGTIRCWNLPPNQDPDDSY 383 (577)
T ss_pred cccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec-c---------CceeeeeccCCCCCccccc
Confidence 4577889999 2200 1235555555667777777777777765531 1 1444445443322211
Q ss_pred -----eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCcee-------------------------------
Q 020756 75 -----GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI------------------------------- 118 (321)
Q Consensus 75 -----~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~------------------------------- 118 (321)
.-+-+.|.+.|..+++|+...+|+.| +.|+++++|+......
T Consensus 384 dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc--s~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~ 461 (577)
T KOG0642|consen 384 DPSVLSGTLLGHTDAVWLLALSSTKDRLLSC--SSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRF 461 (577)
T ss_pred Ccchhccceeccccceeeeeecccccceeee--cCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhccc
Confidence 11234588999999999988888887 5578998885421100
Q ss_pred --------------EEeC---------CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEE
Q 020756 119 --------------LELG---------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSE 173 (321)
Q Consensus 119 --------------~~~~---------~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~ 173 (321)
..+. ...++.+.|+|.+.+.+.+. .++.|.++|..+++.+....+| .+++++
T Consensus 462 ~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~h---ed~~Ir~~dn~~~~~l~s~~a~~~svtsla 538 (577)
T KOG0642|consen 462 GYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAH---EDRSIRFFDNKTGKILHSMVAHKDSVTSLA 538 (577)
T ss_pred ccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecc---cCCceecccccccccchheeeccceeccee
Confidence 0010 12456788999998877777 7899999999999999888777 678899
Q ss_pred EccCCCEEEEEEcCCceeecCcEEEEeecCcee
Q 020756 174 WSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF 206 (321)
Q Consensus 174 wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l 206 (321)
+.|+|-||++++. |+.+.+|.+.-..+
T Consensus 539 i~~ng~~l~s~s~------d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 539 IDPNGPYLMSGSH------DGSVRLWKLDVKTC 565 (577)
T ss_pred ecCCCceEEeecC------Cceeehhhccchhe
Confidence 9999999999995 99999998854433
No 260
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.18 E-value=3.8e-05 Score=75.52 Aligned_cols=206 Identities=14% Similarity=0.257 Sum_probs=127.6
Q ss_pred CCCceEEEEEcCCcCCC---Cc---eeee------ecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEc
Q 020756 2 GSPASVQIYACGKDLQS---QP---LARR------SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT 69 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~---~~---i~~~------~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~ 69 (321)
|..|-++|-.+.+..+. .. .++. .-+++.+..+.||-+.+.|-. .|.+|-. -+|.+-
T Consensus 33 G~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTt-----SDt~GlI-----iVWmly- 101 (1189)
T KOG2041|consen 33 GADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTT-----SDTSGLI-----IVWMLY- 101 (1189)
T ss_pred cccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccc-----cCCCceE-----EEEeee-
Confidence 67788888888763211 11 1222 234567778889988887633 2333322 112111
Q ss_pred CCC-ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEE--eCCcCeeeEEEcCCCCeEEEEccCCC
Q 020756 70 DGT-HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE--LGSGPYNTVRWNPKGKFLCLAGFGNL 146 (321)
Q Consensus 70 ~g~-~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~--~~~~~~~~~~~sPdG~~l~~~g~~n~ 146 (321)
+|. -+..+.-..+..|.+++|+-||..+|++ +.||.+.+=.++++.+.. +.......+.||||.+.+++.- .
T Consensus 102 kgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIv--YeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~---a 176 (1189)
T KOG2041|consen 102 KGSWCEEMINNRNKSVVVSMSWNLDGTKICIV--YEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKK---A 176 (1189)
T ss_pred cccHHHHHhhCcCccEEEEEEEcCCCcEEEEE--EccCCEEEEeeccceecchhcchheccceeecccHHHHHhhh---c
Confidence 221 2334444466788999999999999998 457888888888776643 3334455788999998888876 5
Q ss_pred CCcEEEEECCCC-------eE-E-------------Ee----------------------------------------e-
Q 020756 147 PGDMAFWDYVDG-------KQ-L-------------GT----------------------------------------T- 164 (321)
Q Consensus 147 ~g~i~iwD~~~~-------~~-i-------------~~----------------------------------------~- 164 (321)
.|.+.+||.+.. .+ + .. +
T Consensus 177 nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d 256 (1189)
T KOG2041|consen 177 NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD 256 (1189)
T ss_pred CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe
Confidence 678888876531 01 0 00 0
Q ss_pred eCCCeeeEEEccCCCEEEEEEcCC---ceeecCcEEEEeecCcee--EEeccCceEEEEEecCC
Q 020756 165 RAECSVTSEWSPDGRYFMTATTAP---RLQIDNGIKIFHHNGSLF--FKKMFDKLFQAEWKPVS 223 (321)
Q Consensus 165 ~~~~~~~~~wSpdG~~l~t~~s~~---rl~~d~~v~iw~~~g~~l--~~~~~~~~~~~~w~P~~ 223 (321)
.+-.++.+.|+|+|..|+.++... .-+..|.+++|..-|..+ ++..-..+..++|--.+
T Consensus 257 tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~g 320 (1189)
T KOG2041|consen 257 TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTG 320 (1189)
T ss_pred cccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCc
Confidence 001233468999999999887531 111346788888888777 44455577888886544
No 261
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=98.16 E-value=3.1e-05 Score=70.12 Aligned_cols=207 Identities=16% Similarity=0.211 Sum_probs=122.9
Q ss_pred CCCceEEEEEcCCcCCCCceeeeecccCc-cce--EEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce--ee
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFRCS-TVQ--LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE--GL 76 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~~~-~~~--~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~--~~ 76 (321)
+.+|.||+|+++. .+++++..+-+.. ... +.-|..++.+++- ++.-.+. ..|+++++..... ..
T Consensus 91 ssDG~Vr~wD~Rs---~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~G--tE~~~s~------A~v~lwDvR~~qq~l~~ 159 (376)
T KOG1188|consen 91 SSDGTVRLWDIRS---QAESARISWTQQSGTPFICLDLNCKKNIIACG--TELTRSD------ASVVLWDVRSEQQLLRQ 159 (376)
T ss_pred ccCCeEEEEEeec---chhhhheeccCCCCCcceEeeccCcCCeEEec--cccccCc------eEEEEEEeccccchhhh
Confidence 3578999999999 6666666654322 222 2223344444332 2211111 2255555533321 22
Q ss_pred eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-----eeEEe-CCcCeeeEEEcCCC--CeEEEEccCCCCC
Q 020756 77 VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-----PILEL-GSGPYNTVRWNPKG--KFLCLAGFGNLPG 148 (321)
Q Consensus 77 v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-----~~~~~-~~~~~~~~~~sPdG--~~l~~~g~~n~~g 148 (321)
..-.|.+.|+.++|+|..-.+++. |.-||.+.|||++.. ....+ +...|..+.|+-++ +..+++ -..
T Consensus 160 ~~eSH~DDVT~lrFHP~~pnlLlS-GSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clT----H~E 234 (376)
T KOG1188|consen 160 LNESHNDDVTQLRFHPSDPNLLLS-GSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLT----HME 234 (376)
T ss_pred hhhhccCcceeEEecCCCCCeEEe-ecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEE----ccC
Confidence 333589999999999987766654 788999999999654 23344 45568999999998 755555 457
Q ss_pred cEEEEECCCCeEEEeeeCCCeee------------E-EEcc-CCCEEEEEEcCCceeecCcEEEEee----cCcee----
Q 020756 149 DMAFWDYVDGKQLGTTRAECSVT------------S-EWSP-DGRYFMTATTAPRLQIDNGIKIFHH----NGSLF---- 206 (321)
Q Consensus 149 ~i~iwD~~~~~~i~~~~~~~~~~------------~-~wSp-dG~~l~t~~s~~rl~~d~~v~iw~~----~g~~l---- 206 (321)
+..+|+++.+.+...++.+.+.. + +.+| ++.+++++++. -|...|+-+ .|..+
T Consensus 235 tf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~-----~n~~~~~~~~~~~s~~~~~~~a 309 (376)
T KOG1188|consen 235 TFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTD-----SNKGTIFPLVDTSSGSLLTEPA 309 (376)
T ss_pred ceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccc-----cCceeEEEeeecccccccCccc
Confidence 89999999887666655442211 1 2334 55666666541 344444433 23222
Q ss_pred -EEe-ccCceEEEEEecCCCCCCCC
Q 020756 207 -FKK-MFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 207 -~~~-~~~~~~~~~w~P~~~~~~~~ 229 (321)
..+ +..-|.++.|.-....+|+.
T Consensus 310 ~l~g~~~eiVR~i~~~~~~~~l~TG 334 (376)
T KOG1188|consen 310 ILQGGHEEIVRDILFDVKNDVLYTG 334 (376)
T ss_pred cccCCcHHHHHHHhhhcccceeecc
Confidence 222 44456677776666666655
No 262
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=98.16 E-value=8.1e-06 Score=77.99 Aligned_cols=116 Identities=15% Similarity=0.260 Sum_probs=92.9
Q ss_pred CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC---------CceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCC
Q 020756 80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK---------CRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPG 148 (321)
Q Consensus 80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~---------~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g 148 (321)
.|.+-|.+.+|.|....|+.+ +.++.+.+|++. -+++.+| |.++|-|+.+++.|..+.++| .||
T Consensus 292 s~~d~ir~l~~~~sep~lit~--sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg---~Dg 366 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITA--SEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG---IDG 366 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEe--ccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec---cCc
Confidence 367778889999988888885 788999999881 2477788 899999999999999999999 999
Q ss_pred cEEEEECC------CC----eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee
Q 020756 149 DMAFWDYV------DG----KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF 206 (321)
Q Consensus 149 ~i~iwD~~------~~----~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l 206 (321)
+|+.|++- +. .....+.+| .+..+++|..-..|+++++ |+++++|+..+...
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~------DgTvr~w~~~~~~~ 430 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSS------DGTVRLWEPTEESP 430 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecC------CceEEeeccCCcCc
Confidence 99999543 11 233444555 5667899999888888885 99999999976544
No 263
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.16 E-value=0.0011 Score=62.10 Aligned_cols=112 Identities=16% Similarity=0.146 Sum_probs=76.8
Q ss_pred EECc-CCCEEEEEEccCCCeEEEEeCCCc------eeEEe---------CCcCeeeEEEcCCCCeEEEEccCC-------
Q 020756 89 QWSY-SGSEFAVVYGFMPASATIFNKKCR------PILEL---------GSGPYNTVRWNPKGKFLCLAGFGN------- 145 (321)
Q Consensus 89 ~wsP-~g~~l~~~~g~~~~~i~i~d~~~~------~~~~~---------~~~~~~~~~~sPdG~~l~~~g~~n------- 145 (321)
.+++ +|+++.+. +. +++.+.|+.+. .+..+ ..+...-++++|+|+.|.+...+.
T Consensus 200 ~~~~~dg~~~~vs--~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~ 276 (352)
T TIGR02658 200 AYSNKSGRLVWPT--YT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKT 276 (352)
T ss_pred ceEcCCCcEEEEe--cC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccC
Confidence 3455 88887774 43 89999996332 22222 122334599999999888853211
Q ss_pred CCCcEEEEECCCCeEEEeeeC-CCeeeEEEccCCC-EEEEEEcCCceeecCcEEEEeec-CceeEE
Q 020756 146 LPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGR-YFMTATTAPRLQIDNGIKIFHHN-GSLFFK 208 (321)
Q Consensus 146 ~~g~i~iwD~~~~~~i~~~~~-~~~~~~~wSpdG~-~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~ 208 (321)
..+.|.++|..+++.+..+.- ..+..+++||||+ +|.+..- .++.|.+.|.. ++.+..
T Consensus 277 ~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~-----~s~~VsViD~~t~k~i~~ 337 (352)
T TIGR02658 277 ASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALST-----GDKTLYIFDAETGKELSS 337 (352)
T ss_pred CCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCC-----CCCcEEEEECcCCeEEee
Confidence 125899999999999988764 4888999999999 5554442 47889999984 445543
No 264
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.14 E-value=0.00021 Score=74.17 Aligned_cols=133 Identities=13% Similarity=0.296 Sum_probs=85.1
Q ss_pred EEEECcCCCEEEEEE---ccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC--
Q 020756 87 DVQWSYSGSEFAVVY---GFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-- 158 (321)
Q Consensus 87 ~~~wsP~g~~l~~~~---g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~-- 158 (321)
.+.|--||++|++.+ .....++++||..+. +... ..+.-.+++|-|.|..|++..-...+++|.|+..+..
T Consensus 200 ~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~-Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~h 278 (1265)
T KOG1920|consen 200 SISWRGDGEYFAVSFVESETGTRKIRVYDREGA-LNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRH 278 (1265)
T ss_pred eEEEccCCcEEEEEEEeccCCceeEEEecccch-hhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccc
Confidence 599999999999842 222268999998732 2222 3445568999999999999764445678999987422
Q ss_pred -eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee---EEeccCceEEEEEecCC
Q 020756 159 -KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF---FKKMFDKLFQAEWKPVS 223 (321)
Q Consensus 159 -~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l---~~~~~~~~~~~~w~P~~ 223 (321)
+....+... .+..++|+-++..|++.++.. ....|++|.+....- ....++..--+.|+|-.
T Consensus 279 g~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~---e~~~v~lwt~~NyhWYLKq~l~~~~~~~~~W~p~~ 346 (1265)
T KOG1920|consen 279 GEFVLPFPLDEKEVEELAWNSNSDILAVVTSNL---ENSLVQLWTTGNYHWYLKQELQFSQKALLMWDPVT 346 (1265)
T ss_pred cccccCCcccccchheeeecCCCCceeeeeccc---ccceEEEEEecCeEEEEEEEEeccccccccccCCC
Confidence 222222222 377899999999999865431 133499998754322 12223333336777743
No 265
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.14 E-value=0.00028 Score=75.36 Aligned_cols=111 Identities=13% Similarity=0.070 Sum_probs=76.8
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeE--------------EeCC----------cCeeeEEEcCCCCeEE
Q 020756 84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL--------------ELGS----------GPYNTVRWNPKGKFLC 139 (321)
Q Consensus 84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~--------------~~~~----------~~~~~~~~sPdG~~l~ 139 (321)
..+.++++|+|+.|+++. ...++|.+||+...... .++. ..-..+.++|+|+.++
T Consensus 741 ~P~GIavspdG~~LYVAD-s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYV 819 (1057)
T PLN02919 741 QPSGISLSPDLKELYIAD-SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYV 819 (1057)
T ss_pred CccEEEEeCCCCEEEEEE-CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEE
Confidence 346799999999888763 44579999998643221 1110 0124688999998666
Q ss_pred EEccCCCCCcEEEEECCCCeEEEeeeC---------------CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc
Q 020756 140 LAGFGNLPGDMAFWDYVDGKQLGTTRA---------------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 204 (321)
Q Consensus 140 ~~g~~n~~g~i~iwD~~~~~~i~~~~~---------------~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~ 204 (321)
+-. .++.|.+||..++........ .....+++++||+.+++-+ .++.|++||+...
T Consensus 820 ADs---~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt------~Nn~Irvid~~~~ 890 (1057)
T PLN02919 820 ADS---YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADT------NNSLIRYLDLNKG 890 (1057)
T ss_pred EEC---CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEEC------CCCEEEEEECCCC
Confidence 554 568999999988765433211 1356689999999766665 4889999999653
No 266
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.10 E-value=0.00031 Score=63.93 Aligned_cols=175 Identities=14% Similarity=0.228 Sum_probs=118.5
Q ss_pred CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEE---EEecccCCCcee----ecceeEEEEEc-CCCcee
Q 020756 4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAV---AQSDVDKTNQSY----YGESKLNYLTT-DGTHEG 75 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~---~~~d~d~t~~s~----~g~~~l~~l~~-~g~~~~ 75 (321)
-|.|.||+.... -+.+.....+-.+--++.|.|||+.|++. ..|..| +|+.- .=..+|.+++. .|.-..
T Consensus 76 ~G~IgVyd~~~~--~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd-~GR~kLNl~tM~psL~~ld~~sG~ll~ 152 (305)
T PF07433_consen 76 RGVIGVYDAARG--YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPD-SGRAKLNLDTMQPSLVYLDARSGALLE 152 (305)
T ss_pred cEEEEEEECcCC--cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcc-cCceecChhhcCCceEEEecCCCceee
Confidence 478999999941 46677777788889999999999888775 122111 11110 01234667744 555455
Q ss_pred eeecC---CCCCeEEEEECcCCCEEEEEE--cc---CCCeEEEEeCCCceeEEe---------CCcCeeeEEEcCCCCeE
Q 020756 76 LVPLR---KEGPVHDVQWSYSGSEFAVVY--GF---MPASATIFNKKCRPILEL---------GSGPYNTVRWNPKGKFL 138 (321)
Q Consensus 76 ~v~l~---~~~~v~~~~wsP~g~~l~~~~--g~---~~~~i~i~d~~~~~~~~~---------~~~~~~~~~~sPdG~~l 138 (321)
++.+. |.-.|..++|+++|..++-.. |. .+-.+-+++.... +..+ -.+.+.+|+++++|++|
T Consensus 153 q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~-~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~i 231 (305)
T PF07433_consen 153 QVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA-LRLLPAPEEQWRRLNGYIGSIAADRDGRLI 231 (305)
T ss_pred eeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc-ceeccCChHHHHhhCCceEEEEEeCCCCEE
Confidence 55552 566899999999998655542 11 1124555554332 2222 14678899999999999
Q ss_pred EEEccCCCCCcEEEEECCCCeEEEeeeCCCeeeEEEccCCCEEEEEE
Q 020756 139 CLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTAT 185 (321)
Q Consensus 139 ~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~t~~ 185 (321)
++++. ..+.+.+||..+++.+....-.++..++-.++| |+++.+
T Consensus 232 a~tsP--rGg~~~~~d~~tg~~~~~~~l~D~cGva~~~~~-f~~ssG 275 (305)
T PF07433_consen 232 AVTSP--RGGRVAVWDAATGRLLGSVPLPDACGVAPTDDG-FLVSSG 275 (305)
T ss_pred EEECC--CCCEEEEEECCCCCEeeccccCceeeeeecCCc-eEEeCC
Confidence 88874 347999999999999998887888888888888 666655
No 267
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.08 E-value=0.00088 Score=59.84 Aligned_cols=129 Identities=17% Similarity=0.216 Sum_probs=87.4
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEEeCCC---ceeEEe--CCcCeeeEEEcCCC-CeEEEEccCCCCCcEEEEECC-C
Q 020756 85 VHDVQWSYSGSEFAVVYGFMPASATIFNKKC---RPILEL--GSGPYNTVRWNPKG-KFLCLAGFGNLPGDMAFWDYV-D 157 (321)
Q Consensus 85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~---~~~~~~--~~~~~~~~~~sPdG-~~l~~~g~~n~~g~i~iwD~~-~ 157 (321)
..++.|++.|..+++. ...+.+.+-+.+. +.++.+ |.-.+.+..|+-.. +.+.++| .|+.+..||++ .
T Consensus 124 ~lslD~~~~~~~i~vs--~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGg---DD~~l~~~D~R~p 198 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVS--DSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGG---DDGSLSCWDIRIP 198 (339)
T ss_pred eeEEEeeccCceEEEE--cCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecC---CCceEEEEEecCC
Confidence 4578999999998773 5556666443322 222223 66677777777544 4555566 89999999998 3
Q ss_pred CeEEEe-eeCC--CeeeEEEcc-CCCEEEEEEcCCceeecCcEEEEeec--CceeEEecc-CceEEEEEecCCC
Q 020756 158 GKQLGT-TRAE--CSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIFHHN--GSLFFKKMF-DKLFQAEWKPVSP 224 (321)
Q Consensus 158 ~~~i~~-~~~~--~~~~~~wSp-dG~~l~t~~s~~rl~~d~~v~iw~~~--g~~l~~~~~-~~~~~~~w~P~~~ 224 (321)
++.+-. ..-| .+.++.=|| ++.+|+|++ +|..+++||.. |+.++.... +.||-+.|+|...
T Consensus 199 ~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGs------YDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 199 KTFIWHNSKVHTSGVVSIYSSPPKPTYIATGS------YDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred cceeeecceeeecceEEEecCCCCCceEEEec------cccceeeeehhcccCccccCccccceEEEEecchhh
Confidence 343322 1112 566666665 688899998 79999999985 677765544 5899999999654
No 268
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.08 E-value=0.00079 Score=59.91 Aligned_cols=152 Identities=13% Similarity=0.250 Sum_probs=89.9
Q ss_pred EEeCCCCCeeEEEEEeccc-CCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEe
Q 020756 34 LNWNRGSTGLLAVAQSDVD-KTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFN 112 (321)
Q Consensus 34 ~~Wsp~G~~l~~~~~~d~d-~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d 112 (321)
+.-+.+|+.|+++..+.+. ++-+.-|+. +.+ .++|+-+..-.=.-++||||+..||+++ ..++|.+||
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~s-------i~~--kcqVpkD~~PQWRkl~WSpD~tlLa~a~--S~G~i~vfd 71 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSS-------IIG--KCQVPKDPNPQWRKLAWSPDCTLLAYAE--STGTIRVFD 71 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchh-------eeE--EEecCCCCCchheEEEECCCCcEEEEEc--CCCeEEEEe
Confidence 4557899999998533211 111111110 001 2344434444456899999999999974 356787777
Q ss_pred CCCceeE--------------------------------------------------------------Ee---CCcCee
Q 020756 113 KKCRPIL--------------------------------------------------------------EL---GSGPYN 127 (321)
Q Consensus 113 ~~~~~~~--------------------------------------------------------------~~---~~~~~~ 127 (321)
+.+..++ .| ....++
T Consensus 72 l~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~ 151 (282)
T PF15492_consen 72 LMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGIN 151 (282)
T ss_pred cccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCcee
Confidence 6321100 11 123577
Q ss_pred eEEEcCCCCeEEEEccCCCC--------CcEEEEECCCCe----EEE-------------------e--------eeCCC
Q 020756 128 TVRWNPKGKFLCLAGFGNLP--------GDMAFWDYVDGK----QLG-------------------T--------TRAEC 168 (321)
Q Consensus 128 ~~~~sPdG~~l~~~g~~n~~--------g~i~iwD~~~~~----~i~-------------------~--------~~~~~ 168 (321)
++.|+|.-++|+++|-.+.+ .-+.-|.+-++. ++. . .+...
T Consensus 152 ~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~ 231 (282)
T PF15492_consen 152 SAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDG 231 (282)
T ss_pred EEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCc
Confidence 88999998999988753322 134455433321 100 0 01236
Q ss_pred eeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756 169 SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 169 ~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
+..+..||||.+||+... .+.+.||++-
T Consensus 232 i~kmSlSPdg~~La~ih~------sG~lsLW~iP 259 (282)
T PF15492_consen 232 IFKMSLSPDGSLLACIHF------SGSLSLWEIP 259 (282)
T ss_pred eEEEEECCCCCEEEEEEc------CCeEEEEecC
Confidence 677899999999999995 8999999983
No 269
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.02 E-value=7.6e-05 Score=68.85 Aligned_cols=87 Identities=15% Similarity=0.040 Sum_probs=67.2
Q ss_pred eeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCc
Q 020756 74 EGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGD 149 (321)
Q Consensus 74 ~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~ 149 (321)
.....+.|...+.+++||||+++++++ +.|.+|++-... ...+..| |...|..++.-+ +..|+++| .|++
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~Iita--DRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~s---GD~t 216 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFIITA--DRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGS---GDKT 216 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEEEe--cCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecC---CCCc
Confidence 345556789999999999999999886 778888886663 3334444 677888888775 44578887 8899
Q ss_pred EEEEECCCCeEEEeeeC
Q 020756 150 MAFWDYVDGKQLGTTRA 166 (321)
Q Consensus 150 i~iwD~~~~~~i~~~~~ 166 (321)
|++||+.+|+++.++..
T Consensus 217 lr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 217 LRLWDITSGKLLDTCDL 233 (390)
T ss_pred EEEEecccCCcccccch
Confidence 99999999998866554
No 270
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.00 E-value=0.0051 Score=56.11 Aligned_cols=201 Identities=14% Similarity=0.128 Sum_probs=121.8
Q ss_pred EEEEEcCCcCCCCceeee------ecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC
Q 020756 7 VQIYACGKDLQSQPLARR------SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR 80 (321)
Q Consensus 7 v~v~~~~~~~~~~~i~~~------~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~ 80 (321)
..+|+..+ ++.+... .||- .-.||+||++|++. .+|. .++. |...+|.+ .....+.-++.
T Consensus 30 ~~v~D~~~---g~~~~~~~a~~gRHFyG----Hg~fs~dG~~LytT-End~-~~g~---G~IgVyd~--~~~~~ri~E~~ 95 (305)
T PF07433_consen 30 ALVFDCRT---GQLLQRLWAPPGRHFYG----HGVFSPDGRLLYTT-ENDY-ETGR---GVIGVYDA--ARGYRRIGEFP 95 (305)
T ss_pred EEEEEcCC---CceeeEEcCCCCCEEec----CEEEcCCCCEEEEe-cccc-CCCc---EEEEEEEC--cCCcEEEeEec
Confidence 45666666 4444333 2332 34689999998774 2222 1122 44345544 33333333333
Q ss_pred -CCCCeEEEEECcCCCEEEEEEcc----------------CCCeEEEEeCC-CceeEE--e----CCcCeeeEEEcCCCC
Q 020756 81 -KEGPVHDVQWSYSGSEFAVVYGF----------------MPASATIFNKK-CRPILE--L----GSGPYNTVRWNPKGK 136 (321)
Q Consensus 81 -~~~~v~~~~wsP~g~~l~~~~g~----------------~~~~i~i~d~~-~~~~~~--~----~~~~~~~~~~sPdG~ 136 (321)
+.-.-|++.|.|||+.|+++-|. |...+.+.|.. +..+.. + +...+..++++++|.
T Consensus 96 s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~ 175 (305)
T PF07433_consen 96 SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGT 175 (305)
T ss_pred CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCc
Confidence 22245789999999999997543 33345555553 333332 2 455788899999998
Q ss_pred eEEEEccCCC----CCcEEEEECCCCeEEEeeeC---------CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-c
Q 020756 137 FLCLAGFGNL----PGDMAFWDYVDGKQLGTTRA---------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-N 202 (321)
Q Consensus 137 ~l~~~g~~n~----~g~i~iwD~~~~~~i~~~~~---------~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~ 202 (321)
.++-.-+... ..-|.+++... .+..+.. +++-+++++.+|.++++++ || .+.+.+||. +
T Consensus 176 V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~ts--Pr---Gg~~~~~d~~t 248 (305)
T PF07433_consen 176 VAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTS--PR---GGRVAVWDAAT 248 (305)
T ss_pred EEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHHHHhhCCceEEEEEeCCCCEEEEEC--CC---CCEEEEEECCC
Confidence 7766543211 12344555433 2222222 3677899999999988776 44 899999987 6
Q ss_pred CceeEEeccCceEEEEEecCCCCCCCC
Q 020756 203 GSLFFKKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 203 g~~l~~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
|+++.......++.++-.++. .+++.
T Consensus 249 g~~~~~~~l~D~cGva~~~~~-f~~ss 274 (305)
T PF07433_consen 249 GRLLGSVPLPDACGVAPTDDG-FLVSS 274 (305)
T ss_pred CCEeeccccCceeeeeecCCc-eEEeC
Confidence 778777788888888877766 34443
No 271
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.00 E-value=0.0025 Score=68.18 Aligned_cols=133 Identities=11% Similarity=0.011 Sum_probs=86.6
Q ss_pred EEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe-CC----------------cCeeeEEEcCCCCeEEEEccCCCCC
Q 020756 86 HDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-GS----------------GPYNTVRWNPKGKFLCLAGFGNLPG 148 (321)
Q Consensus 86 ~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~-~~----------------~~~~~~~~sPdG~~l~~~g~~n~~g 148 (321)
++++++|++..+.++ ....+.|.+||.....+..+ +. ...+.++|+|+|+.|.++.. .++
T Consensus 686 ~gVa~dp~~g~LyVa-d~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs--~n~ 762 (1057)
T PLN02919 686 WDVCFEPVNEKVYIA-MAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS--ESS 762 (1057)
T ss_pred eEEEEecCCCeEEEE-ECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC--CCC
Confidence 589999966555554 34467899999865544433 11 12345899999998877764 348
Q ss_pred cEEEEECCCCeEEEeee-----------------------CCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce
Q 020756 149 DMAFWDYVDGKQLGTTR-----------------------AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 205 (321)
Q Consensus 149 ~i~iwD~~~~~~i~~~~-----------------------~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~ 205 (321)
.|.+||++++....... ......++++++|..+++-+ .++.|++||..+..
T Consensus 763 ~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs------~N~rIrviD~~tg~ 836 (1057)
T PLN02919 763 SIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADS------YNHKIKKLDPATKR 836 (1057)
T ss_pred eEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEEC------CCCEEEEEECCCCe
Confidence 99999998764221110 00234689999998666655 48899999997655
Q ss_pred eEEe----------------ccCceEEEEEecCCCCCC
Q 020756 206 FFKK----------------MFDKLFQAEWKPVSPDKF 227 (321)
Q Consensus 206 l~~~----------------~~~~~~~~~w~P~~~~~~ 227 (321)
+... .......+.+.|++..++
T Consensus 837 v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyV 874 (1057)
T PLN02919 837 VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFV 874 (1057)
T ss_pred EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEE
Confidence 4211 122566788888875333
No 272
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.99 E-value=2.2e-05 Score=48.70 Aligned_cols=35 Identities=29% Similarity=0.705 Sum_probs=31.4
Q ss_pred eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEE
Q 020756 117 PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD 154 (321)
Q Consensus 117 ~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD 154 (321)
.+..+ |...++++.|+|++++|++++ .|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~---~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGS---SDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEE---TTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeC---CCCEEEEEC
Confidence 44555 789999999999999999999 999999998
No 273
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.97 E-value=0.0002 Score=69.02 Aligned_cols=110 Identities=14% Similarity=0.127 Sum_probs=91.6
Q ss_pred ccCCCeEEEEeCCCceeEEe-----CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEE
Q 020756 102 GFMPASATIFNKKCRPILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEW 174 (321)
Q Consensus 102 g~~~~~i~i~d~~~~~~~~~-----~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~w 174 (321)
|...+.+.+|++....+..+ |.++++++.|+-+-.+|-+++ .++.+..|+......++.+... .+..++.
T Consensus 76 gt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~---ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~i 152 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVG---ADLKVVYILEKEKVIIRIWKEQKPLVSSLCI 152 (541)
T ss_pred ecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecC---CceeEEEEecccceeeeeeccCCCccceEEE
Confidence 55567899999866555443 678999999999999999999 9999999999999888887764 7788999
Q ss_pred ccCCCEEEEEEcCCceeecCcEEEEeecC-cee--EEeccCceEEEEEecC
Q 020756 175 SPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLF--FKKMFDKLFQAEWKPV 222 (321)
Q Consensus 175 SpdG~~l~t~~s~~rl~~d~~v~iw~~~g-~~l--~~~~~~~~~~~~w~P~ 222 (321)
+|||..+++++ ..|++|++.. +.+ +.+|.+.+..++|--.
T Consensus 153 s~D~~~l~~as--------~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 153 SPDGKILLTAS--------RQIKVLDIETKEVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred cCCCCEEEecc--------ceEEEEEccCceEEEEecCCCcceEEEEEEEe
Confidence 99999999888 4899999954 444 6678888888888776
No 274
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.97 E-value=0.00011 Score=74.83 Aligned_cols=126 Identities=13% Similarity=0.197 Sum_probs=97.5
Q ss_pred CCEEEEEEccCCCeEEEEeCC--Ccee-EEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEE-eeeCC--
Q 020756 94 GSEFAVVYGFMPASATIFNKK--CRPI-LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG-TTRAE-- 167 (321)
Q Consensus 94 g~~l~~~~g~~~~~i~i~d~~--~~~~-~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~-~~~~~-- 167 (321)
...+-+..|.--+.+.+|+.. ..++ ...|.+.+..+.||-||++|++.+ .|..+++|++++.+... +.-+|
T Consensus 143 ~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~S---dDRsiRlW~i~s~~~~~~~~fgHsa 219 (967)
T KOG0974|consen 143 AEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVS---DDRSIRLWPIDSREVLGCTGFGHSA 219 (967)
T ss_pred CcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEe---cCcceeeeecccccccCcccccccc
Confidence 334444446666788899874 3344 344899999999999999999999 99999999999987655 33344
Q ss_pred CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee--EEeccC-ceEEEEEecCCCCCCCCc
Q 020756 168 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF--FKKMFD-KLFQAEWKPVSPDKFGDI 230 (321)
Q Consensus 168 ~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l--~~~~~~-~~~~~~w~P~~~~~~~~~ 230 (321)
.+.++.++|+ +|++++ .|.+.++|+.+|..+ +.+|.. .++.+...+....+++..
T Consensus 220 Rvw~~~~~~n--~i~t~g------edctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g 277 (967)
T KOG0974|consen 220 RVWACCFLPN--RIITVG------EDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGG 277 (967)
T ss_pred eeEEEEeccc--eeEEec------cceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeec
Confidence 6888999999 889998 699999999988876 555553 677888877777776654
No 275
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=97.96 E-value=5.4e-05 Score=68.78 Aligned_cols=137 Identities=12% Similarity=0.171 Sum_probs=96.8
Q ss_pred ceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc------eeEEe-CCcCeeeEEEcC
Q 020756 61 ESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR------PILEL-GSGPYNTVRWNP 133 (321)
Q Consensus 61 ~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~------~~~~~-~~~~~~~~~~sP 133 (321)
.+.+-++++.++....+ ..+..|.+.+|.-.+..+.. |...+.|..+|+++. ..+.+ |...+.++.---
T Consensus 233 sqqv~L~nvetg~~qsf--~sksDVfAlQf~~s~nLv~~--GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq 308 (425)
T KOG2695|consen 233 SQQVLLTNVETGHQQSF--QSKSDVFALQFAGSDNLVFN--GCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQ 308 (425)
T ss_pred cceeEEEEeeccccccc--ccchhHHHHHhcccCCeeEe--cccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhc
Confidence 34456666666543333 36778888889876654443 788899999999643 44455 777777765544
Q ss_pred -CCCeEEEEccCCCCCcEEEEECCCCeE---EEeeeCC-C-ee--eEEEccCCCEEEEEEcCCceeecCcEEEEeec-Cc
Q 020756 134 -KGKFLCLAGFGNLPGDMAFWDYVDGKQ---LGTTRAE-C-SV--TSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GS 204 (321)
Q Consensus 134 -dG~~l~~~g~~n~~g~i~iwD~~~~~~---i~~~~~~-~-~~--~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~ 204 (321)
++++|+.++ ++|.|.+||++--++ +.+.++| + .. -+-..+....|++++. |.-.+||.+. |.
T Consensus 309 ~s~q~LmaS~---M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd------DcytRiWsl~~gh 379 (425)
T KOG2695|consen 309 FSQQKLMASD---MTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD------DCYTRIWSLDSGH 379 (425)
T ss_pred cccceEeecc---CcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccC------eeEEEEEecccCc
Confidence 578888888 999999999986666 8888887 2 22 2455677777888773 8889999994 77
Q ss_pred eeEEec
Q 020756 205 LFFKKM 210 (321)
Q Consensus 205 ~l~~~~ 210 (321)
++....
T Consensus 380 Ll~tip 385 (425)
T KOG2695|consen 380 LLCTIP 385 (425)
T ss_pred eeeccC
Confidence 765443
No 276
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.94 E-value=0.00019 Score=63.94 Aligned_cols=197 Identities=12% Similarity=0.100 Sum_probs=121.4
Q ss_pred CceEEEEEcCCcCC---CCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee--ee
Q 020756 4 PASVQIYACGKDLQ---SQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL--VP 78 (321)
Q Consensus 4 p~~v~v~~~~~~~~---~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~--v~ 78 (321)
.|.|.+|....... -.++..+.........+.|++.|+.+++.. ..|.. ..+......... .-
T Consensus 94 ~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~-----s~G~~-------~~v~~t~~~le~vq~w 161 (339)
T KOG0280|consen 94 RGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSD-----SRGSI-------SGVYETEMVLEKVQTW 161 (339)
T ss_pred cceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEc-----CCCcE-------EEEecceeeeeecccc
Confidence 46777777665210 012333333333466788999999877642 22221 111111111111 11
Q ss_pred cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEE-----eCCcCeeeEEEcC-CCCeEEEEccCCCCCcEEE
Q 020756 79 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE-----LGSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAF 152 (321)
Q Consensus 79 l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~-----~~~~~~~~~~~sP-dG~~l~~~g~~n~~g~i~i 152 (321)
-.|+-.+-.+.|+-....++.. |..|+.+..||++--..+. .|...|.+|.=|| ++.+|++++ .|-.|.+
T Consensus 162 k~He~E~Wta~f~~~~pnlvyt-GgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGs---YDe~i~~ 237 (339)
T KOG0280|consen 162 KVHEFEAWTAKFSDKEPNLVYT-GGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGS---YDECIRV 237 (339)
T ss_pred cccceeeeeeecccCCCceEEe-cCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEec---cccceee
Confidence 1366677777777655555554 7889999999997221222 2677888888876 577888888 7789999
Q ss_pred EECCCC-eEEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC---c---e--eEEeccCceEEEEEec
Q 020756 153 WDYVDG-KQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG---S---L--FFKKMFDKLFQAEWKP 221 (321)
Q Consensus 153 wD~~~~-~~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g---~---~--l~~~~~~~~~~~~w~P 221 (321)
||.++. +.+....- ..+..+.|+|.-.+.+.+.+ .-++++|-+.+- + . .++.|.+-+|...|+-
T Consensus 238 ~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~C-----Mh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~ 311 (339)
T KOG0280|consen 238 LDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAAC-----MHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDS 311 (339)
T ss_pred eehhcccCccccCccccceEEEEecchhhhHHHHHH-----HhcCceEEEecccccchheeeeccccccceeecccccc
Confidence 999864 55544332 38899999997554444444 488999988742 2 1 2556777889999943
No 277
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=97.94 E-value=3.5e-05 Score=47.73 Aligned_cols=37 Identities=30% Similarity=0.673 Sum_probs=32.7
Q ss_pred CeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEe
Q 020756 158 GKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 200 (321)
Q Consensus 158 ~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~ 200 (321)
++++.++.+| .+.+++|+|++.+|++++. |+.++|||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~------D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSS------DGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEET------TSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCC------CCEEEEEC
Confidence 3567788877 7999999999999999995 99999997
No 278
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.94 E-value=0.00015 Score=65.86 Aligned_cols=136 Identities=10% Similarity=0.194 Sum_probs=91.0
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEE---eC-------CcCeeeEEEcCCC-CeEEEEccCCCCC
Q 020756 81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILE---LG-------SGPYNTVRWNPKG-KFLCLAGFGNLPG 148 (321)
Q Consensus 81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~---~~-------~~~~~~~~~sPdG-~~l~~~g~~n~~g 148 (321)
|...|+++..+.|+..|+.+ .|-+|.||++. .+.-+. +. ..-+++..|+|.- +.++.++ ..|
T Consensus 163 HtyhiNSIS~NsD~Et~lSA---DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS---SKG 236 (433)
T KOG1354|consen 163 HTYHINSISVNSDKETFLSA---DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS---SKG 236 (433)
T ss_pred ceeEeeeeeecCccceEeec---cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec---CCC
Confidence 67788999999999988874 35589999883 222232 21 2346778999964 4556666 779
Q ss_pred cEEEEECCCCeE----EEeeeC--------------CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec--Ccee--
Q 020756 149 DMAFWDYVDGKQ----LGTTRA--------------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSLF-- 206 (321)
Q Consensus 149 ~i~iwD~~~~~~----i~~~~~--------------~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~--g~~l-- 206 (321)
+|++-|++...+ ...++. ..+.++.||++|+||++-. -.+|+|||++ .+.+
T Consensus 237 tIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-------yltvk~wD~nme~~pv~t 309 (433)
T KOG1354|consen 237 TIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-------YLTVKLWDLNMEAKPVET 309 (433)
T ss_pred cEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-------cceeEEEeccccCCcceE
Confidence 999999984311 011111 1556799999999999877 6899999994 2322
Q ss_pred EEecc------------Cc---eEEEEEecCCCCCCCC
Q 020756 207 FKKMF------------DK---LFQAEWKPVSPDKFGD 229 (321)
Q Consensus 207 ~~~~~------------~~---~~~~~w~P~~~~~~~~ 229 (321)
+..|. +. -..++|+-+...+++.
T Consensus 310 ~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TG 347 (433)
T KOG1354|consen 310 YPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTG 347 (433)
T ss_pred EeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecc
Confidence 22211 11 2457999988888775
No 279
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.90 E-value=0.00071 Score=67.80 Aligned_cols=160 Identities=14% Similarity=0.123 Sum_probs=94.7
Q ss_pred ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc------
Q 020756 30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF------ 103 (321)
Q Consensus 30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~------ 103 (321)
......-||+|+.++++... .+..+. ....||.++..+.. ..+. .........|+|||+.+.++...
T Consensus 351 ~vsspaiSpdG~~vA~v~~~-~~~~~d---~~s~Lwv~~~gg~~-~~lt--~g~~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTL-GRGAPD---PASSLWVGPLGGVA-VQVL--EGHSLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred CcccceECCCCCEEEEEEee-cCCCCC---cceEEEEEeCCCcc-eeee--cCCCCCCceECCCCCceEEEecCcceEEE
Confidence 34577889999999887543 332222 24468888765543 4443 22347889999999988776321
Q ss_pred ----CCCeEEEEeCCCceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEE---EECCCCe-EEEe---eeC-C-C-e
Q 020756 104 ----MPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF---WDYVDGK-QLGT---TRA-E-C-S 169 (321)
Q Consensus 104 ----~~~~i~i~d~~~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~i---wD~~~~~-~i~~---~~~-~-~-~ 169 (321)
..+.+.+.++++.....-..+.+..+.|||||..|++.. ++.|++ -....|. .+.. +.. . . +
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~----~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~ 499 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII----GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTA 499 (591)
T ss_pred eccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE----CCEEEEEEEEeCCCCceeecccEEeecccCCcc
Confidence 112333334433222111145799999999999999975 367877 4544553 1211 111 1 2 4
Q ss_pred eeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce
Q 020756 170 VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 205 (321)
Q Consensus 170 ~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~ 205 (321)
..+.|..++.++ .++.. .+..+...+++|..
T Consensus 500 ~~l~W~~~~~L~-V~~~~----~~~~v~~v~vDG~~ 530 (591)
T PRK13616 500 VSLDWRTGDSLV-VGRSD----PEHPVWYVNLDGSN 530 (591)
T ss_pred ccceEecCCEEE-EEecC----CCCceEEEecCCcc
Confidence 779999999965 44431 24445555556654
No 280
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.89 E-value=0.0017 Score=60.95 Aligned_cols=182 Identities=15% Similarity=0.080 Sum_probs=97.3
Q ss_pred EeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC
Q 020756 35 NWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK 114 (321)
Q Consensus 35 ~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~ 114 (321)
.|..+|+.|++.... .|..+||.|++......+++-..........++|+++.++.+. ....+.-.|+.
T Consensus 42 ~ft~dG~kllF~s~~---------dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~--~~~~l~~vdL~ 110 (386)
T PF14583_consen 42 CFTDDGRKLLFASDF---------DGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK--NGRSLRRVDLD 110 (386)
T ss_dssp -B-TTS-EEEEEE-T---------TSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE--TTTEEEEEETT
T ss_pred CcCCCCCEEEEEecc---------CCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE--CCCeEEEEECC
Confidence 689999999996432 2666799999988766665532222334678899999887653 23578888886
Q ss_pred Cc---eeEEeCCcCeeeEEE--cCCCCeEEEEcc-------------------CCCCCcEEEEECCCCeEEEeeeCC-Ce
Q 020756 115 CR---PILELGSGPYNTVRW--NPKGKFLCLAGF-------------------GNLPGDMAFWDYVDGKQLGTTRAE-CS 169 (321)
Q Consensus 115 ~~---~~~~~~~~~~~~~~~--sPdG~~l~~~g~-------------------~n~~g~i~iwD~~~~~~i~~~~~~-~~ 169 (321)
+. .+..+.........| +.|++.++-.-. -+....|.-.|+.+|+....+... .+
T Consensus 111 T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wl 190 (386)
T PF14583_consen 111 TLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWL 190 (386)
T ss_dssp T--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-E
T ss_pred cCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccc
Confidence 54 445556655555566 456777655411 013456777799998766666554 67
Q ss_pred eeEEEcc-CCCEEEEEEcCCceeecCcEEEEeecCceeEE---ecc-CceEEEEEecCCCCCC
Q 020756 170 VTSEWSP-DGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK---KMF-DKLFQAEWKPVSPDKF 227 (321)
Q Consensus 170 ~~~~wSp-dG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~---~~~-~~~~~~~w~P~~~~~~ 227 (321)
..+.+|| |...|+.|---|.-.+|..|.+-+.+|..+.. ... ..+-.=-|.|++..++
T Consensus 191 gH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 191 GHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp EEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred cCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence 7899999 47777777766665566666666666654422 211 1233445677765544
No 281
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.88 E-value=0.0029 Score=56.19 Aligned_cols=145 Identities=18% Similarity=0.222 Sum_probs=90.1
Q ss_pred EEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEEC-cCCCEEEEEEccCCCeEEEEe
Q 020756 34 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWS-YSGSEFAVVYGFMPASATIFN 112 (321)
Q Consensus 34 ~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~ws-P~g~~l~~~~g~~~~~i~i~d 112 (321)
+.|.+....|+++ |..+ ..|+.++..+.....+.+. + ...+.+. ++| .|+++ .. ..+.++|
T Consensus 5 p~~d~~~g~l~~~-----D~~~------~~i~~~~~~~~~~~~~~~~--~-~~G~~~~~~~g-~l~v~--~~-~~~~~~d 66 (246)
T PF08450_consen 5 PVWDPRDGRLYWV-----DIPG------GRIYRVDPDTGEVEVIDLP--G-PNGMAFDRPDG-RLYVA--DS-GGIAVVD 66 (246)
T ss_dssp EEEETTTTEEEEE-----ETTT------TEEEEEETTTTEEEEEESS--S-EEEEEEECTTS-EEEEE--ET-TCEEEEE
T ss_pred eEEECCCCEEEEE-----EcCC------CEEEEEECCCCeEEEEecC--C-CceEEEEccCC-EEEEE--Ec-CceEEEe
Confidence 5788866666664 2222 2478888887755444433 2 6677777 665 45554 22 3466669
Q ss_pred CCCceeEEe--------CCcCeeeEEEcCCCCeEEEEccCC---CC--CcEEEEECCCCeEEEeeeC-CCeeeEEEccCC
Q 020756 113 KKCRPILEL--------GSGPYNTVRWNPKGKFLCLAGFGN---LP--GDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDG 178 (321)
Q Consensus 113 ~~~~~~~~~--------~~~~~~~~~~sPdG~~l~~~g~~n---~~--g~i~iwD~~~~~~i~~~~~-~~~~~~~wSpdG 178 (321)
.....+..+ .....|.+.+.|+|++.++..... .. |.|+.++.. ++....... .....++|+|||
T Consensus 67 ~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg 145 (246)
T PF08450_consen 67 PDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDG 145 (246)
T ss_dssp TTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTS
T ss_pred cCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcc
Confidence 866544433 234578899999999666654211 11 678889987 554333333 366789999999
Q ss_pred CEEEEEEcCCceeecCcEEEEeec
Q 020756 179 RYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 179 ~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
++|..+.+ ..+.|..++++
T Consensus 146 ~~lyv~ds-----~~~~i~~~~~~ 164 (246)
T PF08450_consen 146 KTLYVADS-----FNGRIWRFDLD 164 (246)
T ss_dssp SEEEEEET-----TTTEEEEEEEE
T ss_pred hheeeccc-----ccceeEEEecc
Confidence 99887776 36667777774
No 282
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.87 E-value=0.00031 Score=64.75 Aligned_cols=99 Identities=18% Similarity=0.217 Sum_probs=74.9
Q ss_pred ecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeE-E-e--CCcCeeeEEEcCC
Q 020756 59 YGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL-E-L--GSGPYNTVRWNPK 134 (321)
Q Consensus 59 ~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~-~-~--~~~~~~~~~~sPd 134 (321)
|+...+|.....+..-..+.+ .+.++.++..-|+|+.+.+ |+.-+.+..||+++..+. . + -.+.+..+.-+|.
T Consensus 225 ~hqvR~YDt~~qRRPV~~fd~-~E~~is~~~l~p~gn~Iy~--gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~ 301 (412)
T KOG3881|consen 225 YHQVRLYDTRHQRRPVAQFDF-LENPISSTGLTPSGNFIYT--GNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPT 301 (412)
T ss_pred ceeEEEecCcccCcceeEecc-ccCcceeeeecCCCcEEEE--ecccchhheecccCceeeccccCCccCCcceEEEcCC
Confidence 466667765544433233332 4789999999999998777 566789999999765433 2 3 3678999999999
Q ss_pred CCeEEEEccCCCCCcEEEEECCCCeEEEe
Q 020756 135 GKFLCLAGFGNLPGDMAFWDYVDGKQLGT 163 (321)
Q Consensus 135 G~~l~~~g~~n~~g~i~iwD~~~~~~i~~ 163 (321)
+++|+++| +|..|+|+|+++.+++..
T Consensus 302 ~~~las~G---LDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 302 HPVLASCG---LDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred CceEEeec---cceeEEEeecccchhhhh
Confidence 99999999 999999999998766543
No 283
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=97.83 E-value=0.00029 Score=65.05 Aligned_cols=96 Identities=14% Similarity=0.120 Sum_probs=65.3
Q ss_pred eEEEEeCC-CceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeee-CC--CeeeEEEccCCCEE
Q 020756 107 SATIFNKK-CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-AE--CSVTSEWSPDGRYF 181 (321)
Q Consensus 107 ~i~i~d~~-~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~-~~--~~~~~~wSpdG~~l 181 (321)
.+.+|... +...-.+ |-..+..+.||||+++|+++. .|..|++-....--.+.++- +| .+..++.-++ +.|
T Consensus 133 ~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaD---RDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~L 208 (390)
T KOG3914|consen 133 SFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITAD---RDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLL 208 (390)
T ss_pred eeeeecccccCcchhhhhhhhhheeeecCCCCEEEEec---CCceEEEEecCcccchhhhccccHhheeeeeeccC-cee
Confidence 44445443 3333344 567788999999999999998 99999987665433333332 23 5666666554 557
Q ss_pred EEEEcCCceeecCcEEEEee-cCceeEEeccC
Q 020756 182 MTATTAPRLQIDNGIKIFHH-NGSLFFKKMFD 212 (321)
Q Consensus 182 ~t~~s~~rl~~d~~v~iw~~-~g~~l~~~~~~ 212 (321)
++++ .|+++++||+ +|+++...+..
T Consensus 209 lS~s------GD~tlr~Wd~~sgk~L~t~dl~ 234 (390)
T KOG3914|consen 209 LSGS------GDKTLRLWDITSGKLLDTCDLS 234 (390)
T ss_pred eecC------CCCcEEEEecccCCcccccchh
Confidence 8877 4999999999 68777555544
No 284
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.77 E-value=0.0011 Score=61.26 Aligned_cols=181 Identities=9% Similarity=0.115 Sum_probs=116.2
Q ss_pred CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEc--CCCceeeeec---CCCCCeEEEEECcCCCEEEEEEcc
Q 020756 29 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT--DGTHEGLVPL---RKEGPVHDVQWSYSGSEFAVVYGF 103 (321)
Q Consensus 29 ~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~--~g~~~~~v~l---~~~~~v~~~~wsP~g~~l~~~~g~ 103 (321)
.++..+.||.+|++|+... -|.-+ .||.++. -....+.+.+ .|..-|.+++|.-..+.+.. |.
T Consensus 57 GCiNAlqFS~N~~~L~SGG---DD~~~-------~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~S--G~ 124 (609)
T KOG4227|consen 57 GCINALQFSHNDRFLASGG---DDMHG-------RVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYS--GE 124 (609)
T ss_pred cccceeeeccCCeEEeecC---Cccee-------eeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEec--CC
Confidence 4566788999988876531 11111 1333321 0111122222 25577899999875555444 78
Q ss_pred CCCeEEEEeCCCceeE-Ee-C---CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC----eEEEeeeCC-CeeeEE
Q 020756 104 MPASATIFNKKCRPIL-EL-G---SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG----KQLGTTRAE-CSVTSE 173 (321)
Q Consensus 104 ~~~~i~i~d~~~~~~~-~~-~---~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~----~~i~~~~~~-~~~~~~ 173 (321)
.++++.+.|+...... .+ + .+.|..+.-+|-.+.|++.+ .++.|.|||.+.. +.+...... .-..+.
T Consensus 125 ~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t---~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~ 201 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVT---RAKLVSFIDNRDRQNPISLVLPANSGKNFYTAE 201 (609)
T ss_pred CcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEe---cCceEEEEeccCCCCCCceeeecCCCccceeee
Confidence 8899999999766443 34 3 35788999999999999888 8999999998754 333333222 556789
Q ss_pred EccC-CCEEEEEEcCCceeecCcEEEEeecCc--eeEE--------eccCceEEEEEecCCCCCCCCc
Q 020756 174 WSPD-GRYFMTATTAPRLQIDNGIKIFHHNGS--LFFK--------KMFDKLFQAEWKPVSPDKFGDI 230 (321)
Q Consensus 174 wSpd-G~~l~t~~s~~rl~~d~~v~iw~~~g~--~l~~--------~~~~~~~~~~w~P~~~~~~~~~ 230 (321)
|.|- -++|+++.+ ..++-+||..-. .++. ....+.+.+.|+|.+..+++.+
T Consensus 202 F~P~~P~Li~~~~~------~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiR 263 (609)
T KOG4227|consen 202 FHPETPALILVNSE------TGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIR 263 (609)
T ss_pred ecCCCceeEEeccc------cCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhh
Confidence 9996 566666664 888999998432 1211 1122456788999888777653
No 285
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.74 E-value=0.0018 Score=67.55 Aligned_cols=180 Identities=13% Similarity=0.242 Sum_probs=107.6
Q ss_pred ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 020756 30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT 109 (321)
Q Consensus 30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~ 109 (321)
..+.+.+-.++..+++.... | .+.+++........+- ..+..|..++||||++.++++.|. .++.
T Consensus 70 ~i~s~~fl~d~~~i~v~~~~----------G--~iilvd~et~~~eivg-~vd~GI~aaswS~Dee~l~liT~~--~tll 134 (1265)
T KOG1920|consen 70 EIVSVQFLADTNSICVITAL----------G--DIILVDPETLELEIVG-NVDNGISAASWSPDEELLALITGR--QTLL 134 (1265)
T ss_pred ceEEEEEecccceEEEEecC----------C--cEEEEcccccceeeee-eccCceEEEeecCCCcEEEEEeCC--cEEE
Confidence 55666666666666664311 2 1333332222111111 246789999999999999999663 3443
Q ss_pred EEeCCC----------------c--------eeEEeC-----------------------CcCeeeEEEcCCCCeEEEEc
Q 020756 110 IFNKKC----------------R--------PILELG-----------------------SGPYNTVRWNPKGKFLCLAG 142 (321)
Q Consensus 110 i~d~~~----------------~--------~~~~~~-----------------------~~~~~~~~~sPdG~~l~~~g 142 (321)
+-+... + .-..|+ ..+-.+|.|--||.++++..
T Consensus 135 ~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~ 214 (1265)
T KOG1920|consen 135 FMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSF 214 (1265)
T ss_pred EEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEE
Confidence 332110 0 001121 11223599999999999965
Q ss_pred cCC--CCCcEEEEECCCCeEEE--eeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee------EEeccC
Q 020756 143 FGN--LPGDMAFWDYVDGKQLG--TTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF------FKKMFD 212 (321)
Q Consensus 143 ~~n--~~g~i~iwD~~~~~~i~--~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l------~~~~~~ 212 (321)
.-. ....|.|||.+ |.+-. ......-..++|-|.|..|++--+.+. |+.|.++.-+|-.- ...+..
T Consensus 215 ~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~s---d~~IvffErNGL~hg~f~l~~p~de~ 290 (1265)
T KOG1920|consen 215 VESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTS---DSDIVFFERNGLRHGEFVLPFPLDEK 290 (1265)
T ss_pred EeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCC---CCcEEEEecCCccccccccCCccccc
Confidence 322 22689999997 43222 112224566999999999998776543 66899999877432 112333
Q ss_pred ceEEEEEecCCCCCCC
Q 020756 213 KLFQAEWKPVSPDKFG 228 (321)
Q Consensus 213 ~~~~~~w~P~~~~~~~ 228 (321)
++.++.|+-++..+.-
T Consensus 291 ~ve~L~Wns~sdiLAv 306 (1265)
T KOG1920|consen 291 EVEELAWNSNSDILAV 306 (1265)
T ss_pred chheeeecCCCCceee
Confidence 5888999988765553
No 286
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.72 E-value=0.0033 Score=62.39 Aligned_cols=92 Identities=13% Similarity=0.161 Sum_probs=60.8
Q ss_pred eEEEEeCCCc-eeEEe-CCcCeeeEEEcCCCCeEEEEccCC-------------------------------------CC
Q 020756 107 SATIFNKKCR-PILEL-GSGPYNTVRWNPKGKFLCLAGFGN-------------------------------------LP 147 (321)
Q Consensus 107 ~i~i~d~~~~-~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n-------------------------------------~~ 147 (321)
.+.+.|.... ...++ -.+...-+.++|||+++.++++.+ .+
T Consensus 216 ~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~g 295 (635)
T PRK02888 216 LFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGG 295 (635)
T ss_pred EEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECC
Confidence 4556666543 22333 122334578999999988876311 11
Q ss_pred CcEEEEECCC-----CeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756 148 GDMAFWDYVD-----GKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 203 (321)
Q Consensus 148 g~i~iwD~~~-----~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g 203 (321)
+.|.+.|..+ .+.+..+.-. ....+.+||||+|++++.- .++.+.|.|+..
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank-----lS~tVSVIDv~k 352 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK-----LSPTVTVIDVRK 352 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC-----CCCcEEEEEChh
Confidence 3577788776 3445544443 6777999999999999885 589999999854
No 287
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=97.70 E-value=2.6e-05 Score=77.74 Aligned_cols=109 Identities=15% Similarity=0.227 Sum_probs=91.3
Q ss_pred cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC
Q 020756 79 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 155 (321)
Q Consensus 79 l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~ 155 (321)
+.|...|+++.|...|.++++ |+.|..++||...+. ...+. |.+.+..++.+-..-+++.++ .|.-|.+|-+
T Consensus 187 lgH~naVyca~fDrtg~~Iit--gsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS---~D~vIrvWrl 261 (1113)
T KOG0644|consen 187 LGHRNAVYCAIFDRTGRYIIT--GSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAAS---NDKVIRVWRL 261 (1113)
T ss_pred HhhhhheeeeeeccccceEee--cCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcc---cCceEEEEec
Confidence 357889999999999999888 677889999997543 44444 788899999998888888888 8889999999
Q ss_pred CCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756 156 VDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 156 ~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
.++..+..+.+| .++.++|||-- +++ .|++++|||..
T Consensus 262 ~~~~pvsvLrghtgavtaiafsP~~-----sss-----~dgt~~~wd~r 300 (1113)
T KOG0644|consen 262 PDGAPVSVLRGHTGAVTAIAFSPRA-----SSS-----DDGTCRIWDAR 300 (1113)
T ss_pred CCCchHHHHhccccceeeeccCccc-----cCC-----CCCceEecccc
Confidence 999999988887 69999999975 222 38899999874
No 288
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.68 E-value=0.00094 Score=66.96 Aligned_cols=135 Identities=13% Similarity=0.079 Sum_probs=83.8
Q ss_pred CCeEEEEECcCCCEEEEEEc------cCCCeEEEEeCCCceeEEeCCcCeeeEEEcCCCCeEEEEccCC---------CC
Q 020756 83 GPVHDVQWSYSGSEFAVVYG------FMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGN---------LP 147 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g------~~~~~i~i~d~~~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n---------~~ 147 (321)
..+.+.+.||||+.++++.. .....+.+++..+....-+.........|+|||+.|.+..-++ ..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~ 429 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT 429 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence 35789999999999988752 1123566667644432222222377899999999887764221 23
Q ss_pred CcEEEEECCCCeEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee----cCc-ee-----EEeccC-ceEE
Q 020756 148 GDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH----NGS-LF-----FKKMFD-KLFQ 216 (321)
Q Consensus 148 g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~----~g~-~l-----~~~~~~-~~~~ 216 (321)
+.+++.+++.++....+ ...+..+.|||||.+|+... ++.+.|--+ .|. .+ ...... .+.+
T Consensus 430 gql~~~~vd~ge~~~~~-~g~Issl~wSpDG~RiA~i~-------~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 430 GQLARTPVDASAVASRV-PGPISELQLSRDGVRAAMII-------GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred ceEEEEeccCchhhhcc-CCCcCeEEECCCCCEEEEEE-------CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 46666677655433322 23689999999999999877 455555222 333 11 111222 3578
Q ss_pred EEEecCCCC
Q 020756 217 AEWKPVSPD 225 (321)
Q Consensus 217 ~~w~P~~~~ 225 (321)
+.|.++..-
T Consensus 502 l~W~~~~~L 510 (591)
T PRK13616 502 LDWRTGDSL 510 (591)
T ss_pred ceEecCCEE
Confidence 899998763
No 289
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.67 E-value=0.005 Score=54.57 Aligned_cols=119 Identities=14% Similarity=0.155 Sum_probs=79.2
Q ss_pred ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee-cCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 020756 30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-LRKEGPVHDVQWSYSGSEFAVVYGFMPASA 108 (321)
Q Consensus 30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~-l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i 108 (321)
....+..++|++.+.++- .+ -...+|-|+..+.....+. -+.++.-....||.....||++ ..|+.+
T Consensus 160 ~~ns~~~snd~~~~~~Vg--------ds--~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~--~Qdg~~ 227 (344)
T KOG4532|consen 160 TQNSLHYSNDPSWGSSVG--------DS--RRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVV--FQDGTC 227 (344)
T ss_pred ceeeeEEcCCCceEEEec--------CC--CcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEE--ecCCcE
Confidence 355778899999988762 11 1222444444443322222 2345566788999999999995 778999
Q ss_pred EEEeCCCc--eeEEe------CCcCeeeEEEcCCCC--eEEEEccCCCCCcEEEEECCCCeEEEe
Q 020756 109 TIFNKKCR--PILEL------GSGPYNTVRWNPKGK--FLCLAGFGNLPGDMAFWDYVDGKQLGT 163 (321)
Q Consensus 109 ~i~d~~~~--~~~~~------~~~~~~~~~~sPdG~--~l~~~g~~n~~g~i~iwD~~~~~~i~~ 163 (321)
.|||++.. ++... |.+.+..+.|+|-|- +|+++- .-+.+.+.|+++++....
T Consensus 228 ~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sE---hfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 228 AIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISE---HFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred EEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEec---CcceEEEEEcccCceeeE
Confidence 99999653 33222 678899999999765 344443 457899999998854433
No 290
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=97.65 E-value=0.0001 Score=70.54 Aligned_cols=74 Identities=22% Similarity=0.392 Sum_probs=62.0
Q ss_pred EeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeC-C--CeeeEEEcc--CCCEEEEEEcCCceeecC
Q 020756 120 ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-E--CSVTSEWSP--DGRYFMTATTAPRLQIDN 194 (321)
Q Consensus 120 ~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~-~--~~~~~~wSp--dG~~l~t~~s~~rl~~d~ 194 (321)
+-|.+=||++.|+-+|.+|++++ .|-.+.|||.-..+++..+.. | +|.++.|-| +.+.++++. .|.
T Consensus 47 ~GH~GCVN~LeWn~dG~lL~SGS---DD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgA------gDk 117 (758)
T KOG1310|consen 47 TGHTGCVNCLEWNADGELLASGS---DDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGA------GDK 117 (758)
T ss_pred ccccceecceeecCCCCEEeecC---CcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEecc------Ccc
Confidence 34788899999999999999998 899999999988887776654 4 889999988 456666666 499
Q ss_pred cEEEEeec
Q 020756 195 GIKIFHHN 202 (321)
Q Consensus 195 ~v~iw~~~ 202 (321)
.|+++|++
T Consensus 118 ~i~lfdl~ 125 (758)
T KOG1310|consen 118 LIKLFDLD 125 (758)
T ss_pred eEEEEecc
Confidence 99999995
No 291
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.65 E-value=0.00027 Score=64.31 Aligned_cols=129 Identities=14% Similarity=0.280 Sum_probs=85.7
Q ss_pred eeEEEEEcCCCceeeeecCC------CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCcee-------EEeC------
Q 020756 62 SKLNYLTTDGTHEGLVPLRK------EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-------LELG------ 122 (321)
Q Consensus 62 ~~l~~l~~~g~~~~~v~l~~------~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~-------~~~~------ 122 (321)
.+||.+.+..+.-.+|.+.. ..-|++..|+|....+++. ....|.|+|-|++...+ +...
T Consensus 187 INLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~Y-SSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~r 265 (433)
T KOG1354|consen 187 INLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVY-SSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSR 265 (433)
T ss_pred eeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEE-ecCCCcEEEeechhhhhhcchhhhhccccCCcch
Confidence 45666655444334444431 3568899999976544432 45578999999973211 1111
Q ss_pred ------CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC-CCeEEEeeeCC--------------Ce---eeEEEccCC
Q 020756 123 ------SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV-DGKQLGTTRAE--------------CS---VTSEWSPDG 178 (321)
Q Consensus 123 ------~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~-~~~~i~~~~~~--------------~~---~~~~wSpdG 178 (321)
-..+..+.||+.|++|++-.+ -+|++||++ ..+.+.++.-| ++ ..++||-++
T Consensus 266 sffseiIsSISDvKFs~sGryilsRDy----ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~ 341 (433)
T KOG1354|consen 266 SFFSEIISSISDVKFSHSGRYILSRDY----LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGND 341 (433)
T ss_pred hhHHHHhhhhhceEEccCCcEEEEecc----ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCc
Confidence 124678999999999999752 579999984 33444443322 22 348999999
Q ss_pred CEEEEEEcCCceeecCcEEEEee
Q 020756 179 RYFMTATTAPRLQIDNGIKIFHH 201 (321)
Q Consensus 179 ~~l~t~~s~~rl~~d~~v~iw~~ 201 (321)
.+++||+ +.|-+++++.
T Consensus 342 ~~v~TGs------y~n~frvf~~ 358 (433)
T KOG1354|consen 342 SYVMTGS------YNNVFRVFNL 358 (433)
T ss_pred ceEeccc------ccceEEEecC
Confidence 9999999 6999999985
No 292
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=97.62 E-value=0.011 Score=55.40 Aligned_cols=102 Identities=15% Similarity=0.123 Sum_probs=71.1
Q ss_pred eeEEEEEcCCCc-eeeeecCCCCCeEEEEECcCCCEEEEEEcc--------CCCeEEEEeCCC-ceeEEeC--Cc-----
Q 020756 62 SKLNYLTTDGTH-EGLVPLRKEGPVHDVQWSYSGSEFAVVYGF--------MPASATIFNKKC-RPILELG--SG----- 124 (321)
Q Consensus 62 ~~l~~l~~~g~~-~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~--------~~~~i~i~d~~~-~~~~~~~--~~----- 124 (321)
..++.|+..... ...++... .|. .+ .||||+.|.++..+ .+..|.+||... +.+.++. ..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~-~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGF-LPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEECCCCEEEEEEEccC-CCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 457788775542 23444432 333 34 99999999998552 456899999954 5665652 22
Q ss_pred --CeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC
Q 020756 125 --PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE 167 (321)
Q Consensus 125 --~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~ 167 (321)
....+.+||||++|++..+. -+..|.++|+.+++.+..+.-+
T Consensus 104 ~~~~~~~~ls~dgk~l~V~n~~-p~~~V~VvD~~~~kvv~ei~vp 147 (352)
T TIGR02658 104 GTYPWMTSLTPDNKTLLFYQFS-PSPAVGVVDLEGKAFVRMMDVP 147 (352)
T ss_pred cCccceEEECCCCCEEEEecCC-CCCEEEEEECCCCcEEEEEeCC
Confidence 23478999999999988632 2589999999999988877654
No 293
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.62 E-value=0.0015 Score=67.23 Aligned_cols=176 Identities=11% Similarity=0.131 Sum_probs=109.1
Q ss_pred CCCceEEEEEcCCcCCCCceeeeeccc-CccceEEeCC-CCCeeEEEEEecccCCCceeecceeEEEEEcCCCc-eeeee
Q 020756 2 GSPASVQIYACGKDLQSQPLARRSFFR-CSTVQLNWNR-GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTH-EGLVP 78 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~~~i~~~~~f~-~~~~~~~Wsp-~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~-~~~v~ 78 (321)
|.--.||||+... .+.++..-+.. .....+.=+- .|+.|++... | |...+|.....-.. ...+.
T Consensus 1184 Gd~r~IRIWDa~~---E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfa-D---------GsvRvyD~R~a~~ds~v~~~ 1250 (1387)
T KOG1517|consen 1184 GDVRSIRIWDAHK---EQVVADIPYGSSTLVTALSADLVHGNIIAAGFA-D---------GSVRVYDRRMAPPDSLVCVY 1250 (1387)
T ss_pred CCeeEEEEEeccc---ceeEeecccCCCccceeecccccCCceEEEeec-C---------CceEEeecccCCccccceee
Confidence 3446899999876 33333333321 1222222222 2455544321 1 55556654332221 11222
Q ss_pred cCCCCC--eEEEEECcCCCE-EEEEEccCCCeEEEEeCCCceeEEe-----CC--c-CeeeEEEcCCCCeEEEEccCCCC
Q 020756 79 LRKEGP--VHDVQWSYSGSE-FAVVYGFMPASATIFNKKCRPILEL-----GS--G-PYNTVRWNPKGKFLCLAGFGNLP 147 (321)
Q Consensus 79 l~~~~~--v~~~~wsP~g~~-l~~~~g~~~~~i~i~d~~~~~~~~~-----~~--~-~~~~~~~sPdG~~l~~~g~~n~~ 147 (321)
..|... |..+.+.+.|-- |+. |..+|.|.+||++.....++ +. + ...++..+++...|++++ .
T Consensus 1251 R~h~~~~~Iv~~slq~~G~~elvS--gs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs---~- 1324 (1387)
T KOG1517|consen 1251 REHNDVEPIVHLSLQRQGLGELVS--GSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGS---A- 1324 (1387)
T ss_pred cccCCcccceeEEeecCCCcceee--eccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecC---c-
Confidence 234443 999999887754 444 68899999999987433222 21 3 378899999999999987 5
Q ss_pred CcEEEEECCCCeEEEeeeC---------CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756 148 GDMAFWDYVDGKQLGTTRA---------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 203 (321)
Q Consensus 148 g~i~iwD~~~~~~i~~~~~---------~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g 203 (321)
+.|.|||+. |+.+..+.. ..+++++|+|---++|++. .|+.|.||....
T Consensus 1325 q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~------~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1325 QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGS------ADSTVSIYSCEK 1382 (1387)
T ss_pred ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhcc------CCceEEEeecCC
Confidence 899999994 444443332 1567899999988888886 599999998743
No 294
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=97.55 E-value=0.00056 Score=68.13 Aligned_cols=131 Identities=20% Similarity=0.360 Sum_probs=91.3
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcCeeeEEEcCC------CC------eEEEEccCCCCCc
Q 020756 85 VHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGPYNTVRWNPK------GK------FLCLAGFGNLPGD 149 (321)
Q Consensus 85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~~~~~~~sPd------G~------~l~~~g~~n~~g~ 149 (321)
-.++.|+|.| .||+ |+ ...+.+.|... +.+..+ |...++.+.|.|- +. .|+++. ..|.
T Consensus 18 ~~A~Dw~~~G-LiAy--gs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD---~~Gr 90 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAY--GS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD---ISGR 90 (1062)
T ss_pred ccccccCccc-eEEE--ec-CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEecc---ccCc
Confidence 4578999988 4555 33 23688888743 344444 7889999999974 22 233333 6799
Q ss_pred EEEEECCCCeEEEeeeCC--CeeeEEEcc---CCCEEEEEEcCCceeecCcEEEEee-cCceeEEeccC--ceEEEEEec
Q 020756 150 MAFWDYVDGKQLGTTRAE--CSVTSEWSP---DGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKKMFD--KLFQAEWKP 221 (321)
Q Consensus 150 i~iwD~~~~~~i~~~~~~--~~~~~~wSp---dG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~~~~--~~~~~~w~P 221 (321)
|.+||...+..+..+.++ .+.+++|-+ |.|+++.+-. ..+.+.+|+. +|+.+.+..+. .+.++...|
T Consensus 91 Iil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh-----~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DP 165 (1062)
T KOG1912|consen 91 IILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIH-----GSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDP 165 (1062)
T ss_pred EEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEec-----CCcEEEEEEccCCceeeccccCCcceeeeeeCC
Confidence 999999988888888776 566677754 6777777765 3788999965 78888665554 566688888
Q ss_pred CCCCCC
Q 020756 222 VSPDKF 227 (321)
Q Consensus 222 ~~~~~~ 227 (321)
..+.-+
T Consensus 166 fd~rh~ 171 (1062)
T KOG1912|consen 166 FDSRHF 171 (1062)
T ss_pred CCcceE
Confidence 665444
No 295
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.55 E-value=0.0058 Score=63.91 Aligned_cols=118 Identities=14% Similarity=0.192 Sum_probs=81.6
Q ss_pred CCCCeEE-EEECcCCCEEEEEEccCCCeEEEEeCCCc-----eeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEE
Q 020756 81 KEGPVHD-VQWSYSGSEFAVVYGFMPASATIFNKKCR-----PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD 154 (321)
Q Consensus 81 ~~~~v~~-~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-----~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD 154 (321)
+.+.+.+ -++.-..+...++|+..-+.+..||.+.. ....+.++-+.+++.+|.++.+++|. ..|.+.+||
T Consensus 1147 ~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGt---s~G~l~lWD 1223 (1431)
T KOG1240|consen 1147 KDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGT---SRGQLVLWD 1223 (1431)
T ss_pred CCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEec---CCceEEEEE
Confidence 4555544 33433222234445566678999998643 12233678899999999999999998 789999999
Q ss_pred CCCCeEEEeeeCC---CeeeEEEcc---CCCEEEEEEcCCceeecCcEEEEeecCce
Q 020756 155 YVDGKQLGTTRAE---CSVTSEWSP---DGRYFMTATTAPRLQIDNGIKIFHHNGSL 205 (321)
Q Consensus 155 ~~~~~~i~~~~~~---~~~~~~wSp---dG~~l~t~~s~~rl~~d~~v~iw~~~g~~ 205 (321)
++=+..+...+.+ .+..+..+| .....+++++. ..|-+.+|++.+..
T Consensus 1224 LRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~----~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1224 LRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS----SNNEVSTWNMETGL 1276 (1431)
T ss_pred eecCceeecccCcccCCcceEEeeccCCCCceEEEeccc----CCCceeeeecccCc
Confidence 9988888887765 455555555 34566666642 37889999986543
No 296
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=97.51 E-value=0.0044 Score=54.90 Aligned_cols=112 Identities=7% Similarity=-0.021 Sum_probs=78.7
Q ss_pred cCCCeEEEEeCCCceeEE-eCCc--CeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC--eEEEeeeCC---CeeeEEE
Q 020756 103 FMPASATIFNKKCRPILE-LGSG--PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRAE---CSVTSEW 174 (321)
Q Consensus 103 ~~~~~i~i~d~~~~~~~~-~~~~--~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~--~~i~~~~~~---~~~~~~w 174 (321)
..|.+++++++.+..... .|.. ..+.+.+|||++++++.| .-..|-+|-++.. ..+.+..++ ...+.+|
T Consensus 135 sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vg---ds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~ 211 (344)
T KOG4532|consen 135 SNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVG---DSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSF 211 (344)
T ss_pred cCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEec---CCCcceEEEeCCccceeeeeEecccCCCceeeee
Confidence 557788888876543332 2433 388999999999999998 6678888877643 333323332 4556899
Q ss_pred ccCCCEEEEEEcCCceeecCcEEEEeec--CceeE------EeccCceEEEEEecCC
Q 020756 175 SPDGRYFMTATTAPRLQIDNGIKIFHHN--GSLFF------KKMFDKLFQAEWKPVS 223 (321)
Q Consensus 175 SpdG~~l~t~~s~~rl~~d~~v~iw~~~--g~~l~------~~~~~~~~~~~w~P~~ 223 (321)
|.....+|+++ .|+.+.|||+. +.++. ..|.+.+..+.|+|-+
T Consensus 212 s~~~~~FAv~~------Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 212 SENDLQFAVVF------QDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYG 262 (344)
T ss_pred ccCcceEEEEe------cCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCC
Confidence 99999999999 59999999984 33331 1244578888888744
No 297
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.49 E-value=0.00071 Score=66.90 Aligned_cols=140 Identities=16% Similarity=0.273 Sum_probs=104.5
Q ss_pred eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-------c-----------eeEEeCCcCeeeEEEcCCCCeE
Q 020756 77 VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-------R-----------PILELGSGPYNTVRWNPKGKFL 138 (321)
Q Consensus 77 v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-------~-----------~~~~~~~~~~~~~~~sPdG~~l 138 (321)
+.+......+++.|+-...++++ |..+|.+++.-+.+ . +...-|.+.+..+.|+-+.+.|
T Consensus 9 i~iPnnvkL~c~~WNke~gyIAc--gG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL 86 (1189)
T KOG2041|consen 9 IGIPNNVKLHCAEWNKESGYIAC--GGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKL 86 (1189)
T ss_pred cCCCCCceEEEEEEcccCCeEEe--ccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccc
Confidence 44455677899999999989888 67899888885421 1 1112277889999999999998
Q ss_pred EEEccCCCCCcEEEEECCCCe----EEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEecc--C
Q 020756 139 CLAGFGNLPGDMAFWDYVDGK----QLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMF--D 212 (321)
Q Consensus 139 ~~~g~~n~~g~i~iwD~~~~~----~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~--~ 212 (321)
-++. .+|-|.+|-+-++. .+..-...-+.+++|..||..|...- .|+.|.+=.++|..+.-... .
T Consensus 87 TtSD---t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvY------eDGavIVGsvdGNRIwgKeLkg~ 157 (1189)
T KOG2041|consen 87 TTSD---TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVY------EDGAVIVGSVDGNRIWGKELKGQ 157 (1189)
T ss_pred cccC---CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEE------ccCCEEEEeeccceecchhcchh
Confidence 8887 78999999887663 22222223567899999999999988 59999988888888744333 3
Q ss_pred ceEEEEEecCCCCCC
Q 020756 213 KLFQAEWKPVSPDKF 227 (321)
Q Consensus 213 ~~~~~~w~P~~~~~~ 227 (321)
.+..+.|+||...++
T Consensus 158 ~l~hv~ws~D~~~~L 172 (1189)
T KOG2041|consen 158 LLAHVLWSEDLEQAL 172 (1189)
T ss_pred eccceeecccHHHHH
Confidence 566789999986554
No 298
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.47 E-value=0.018 Score=57.34 Aligned_cols=69 Identities=16% Similarity=0.253 Sum_probs=50.8
Q ss_pred eeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE------------EEeeeC-CCeeeEEEccCCCEEEEEEcCCceee
Q 020756 126 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ------------LGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQI 192 (321)
Q Consensus 126 ~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~------------i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~ 192 (321)
...+.+||||+++++++ .+..+|.|.|+.+.+. +...+- ......+|+++|.-+.+-. .
T Consensus 323 PHGV~vSPDGkylyVan--klS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf------~ 394 (635)
T PRK02888 323 PHGVNTSPDGKYFIANG--KLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLF------L 394 (635)
T ss_pred ccceEECCCCCEEEEeC--CCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEe------e
Confidence 34689999999999987 3578999999987542 333322 2555679999997444444 6
Q ss_pred cCcEEEEeec
Q 020756 193 DNGIKIFHHN 202 (321)
Q Consensus 193 d~~v~iw~~~ 202 (321)
|+.+..|++.
T Consensus 395 dsqv~kwn~~ 404 (635)
T PRK02888 395 DSQIVKWNIE 404 (635)
T ss_pred cceeEEEehH
Confidence 9999999984
No 299
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.39 E-value=0.027 Score=52.97 Aligned_cols=150 Identities=15% Similarity=0.143 Sum_probs=78.0
Q ss_pred ceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC-CCeEEEEECcCCCEEEEEEccC---CCe
Q 020756 32 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE-GPVHDVQWSYSGSEFAVVYGFM---PAS 107 (321)
Q Consensus 32 ~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~-~~v~~~~wsP~g~~l~~~~g~~---~~~ 107 (321)
-.+.+||....+++.+...- ... -...+|.++.+|.....+.-..+ ..+..=-|.|||..|....... +.-
T Consensus 191 gH~~fsP~dp~li~fCHEGp--w~~---Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~ 265 (386)
T PF14583_consen 191 GHVQFSPTDPTLIMFCHEGP--WDL---VDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFW 265 (386)
T ss_dssp EEEEEETTEEEEEEEEE-S---TTT---SS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EE
T ss_pred cCcccCCCCCCEEEEeccCC--cce---eceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceE
Confidence 57888998777777765321 111 12358999999976655542222 3444556899999888753222 224
Q ss_pred EEEEeCCCceeEEe-CCcCeeeEEEcCCCCeEEEEccCC-------------CCCcEEEEECCCCeEEEeeeC-------
Q 020756 108 ATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGN-------------LPGDMAFWDYVDGKQLGTTRA------- 166 (321)
Q Consensus 108 i~i~d~~~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n-------------~~g~i~iwD~~~~~~i~~~~~------- 166 (321)
|.-+|..+.....+ .......+--|+||++++--|... .+.-|++++++.+.......+
T Consensus 266 i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~ 345 (386)
T PF14583_consen 266 IAGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVL 345 (386)
T ss_dssp EEEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------B
T ss_pred EEeeCCCCCCceEEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceee
Confidence 55567755433333 223456677789999987755211 123677888887754322111
Q ss_pred --C---CeeeEEEccCCCEEEEEEc
Q 020756 167 --E---CSVTSEWSPDGRYFMTATT 186 (321)
Q Consensus 167 --~---~~~~~~wSpdG~~l~t~~s 186 (321)
+ .-....|||||++++..+.
T Consensus 346 ~~~~q~~hPhp~FSPDgk~VlF~Sd 370 (386)
T PF14583_consen 346 DGDRQVTHPHPSFSPDGKWVLFRSD 370 (386)
T ss_dssp TTBSSTT----EE-TTSSEEEEEE-
T ss_pred cCCCccCCCCCccCCCCCEEEEECC
Confidence 1 1234899999999999996
No 300
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=97.33 E-value=0.03 Score=50.19 Aligned_cols=143 Identities=16% Similarity=0.220 Sum_probs=90.1
Q ss_pred ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE
Q 020756 30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT 109 (321)
Q Consensus 30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~ 109 (321)
+.....+|++|+.++++.. ..+...|+.....+...... ....+....|+++|...++..+ +....
T Consensus 25 ~~~s~AvS~dg~~~A~v~~---------~~~~~~L~~~~~~~~~~~~~---~g~~l~~PS~d~~g~~W~v~~~--~~~~~ 90 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSE---------GDGGRSLYVGPAGGPVRPVL---TGGSLTRPSWDPDGWVWTVDDG--SGGVR 90 (253)
T ss_pred cccceEECCCCCeEEEEEE---------cCCCCEEEEEcCCCcceeec---cCCccccccccCCCCEEEEEcC--CCceE
Confidence 6778899999999988741 11444577776655432222 3447888999999887777533 33333
Q ss_pred EE-e-CCCce-eEEe---CCc-CeeeEEEcCCCCeEEEEccCCCCCcEEEEECC---CC--eEE----Eee--eCCCeee
Q 020756 110 IF-N-KKCRP-ILEL---GSG-PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV---DG--KQL----GTT--RAECSVT 171 (321)
Q Consensus 110 i~-d-~~~~~-~~~~---~~~-~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~---~~--~~i----~~~--~~~~~~~ 171 (321)
++ + ..+.. ...+ ... .|..+.+||||..+++....+.++.|++--+. .+ ..+ ... ....++.
T Consensus 91 ~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~ 170 (253)
T PF10647_consen 91 VVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTD 170 (253)
T ss_pred EEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCccee
Confidence 33 2 22221 1111 222 89999999999999887644456788876433 22 111 111 1226778
Q ss_pred EEEccCCCEEEEEEc
Q 020756 172 SEWSPDGRYFMTATT 186 (321)
Q Consensus 172 ~~wSpdG~~l~t~~s 186 (321)
+.|.+++.+++.+..
T Consensus 171 v~W~~~~~L~V~~~~ 185 (253)
T PF10647_consen 171 VAWSDDSTLVVLGRS 185 (253)
T ss_pred eeecCCCEEEEEeCC
Confidence 999999998887775
No 301
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.12 Score=49.32 Aligned_cols=203 Identities=15% Similarity=0.152 Sum_probs=127.7
Q ss_pred ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC-C
Q 020756 5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE-G 83 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~-~ 83 (321)
+.+.+++... ........++. ....+.-+++|..+++.... .+ .+..++.. .........-. .
T Consensus 11 ~~~~v~~~~~---~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~----~~-------~~~~~~~~-~n~~~~~~~~g~~ 74 (381)
T COG3391 11 ADVSVINTGT---NKVTAAISLGR-GPGGVAVNPDGTQVYVANSG----SN-------DVSVIDAT-SNTVTQSLSVGGV 74 (381)
T ss_pred CceEEEeecc---cEEEEEeecCC-CCceeEEcCccCEEEEEeec----Cc-------eeeecccc-cceeeeeccCCCc
Confidence 3345555544 34444444443 66677788888888775211 00 22333222 11111111111 2
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe-CCc-CeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEE
Q 020756 84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-GSG-PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQL 161 (321)
Q Consensus 84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~-~~~-~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i 161 (321)
.-..+..++.+..+.+.. .....+.+.|.....+... ..+ .-..+.++|+|+.+.++..++.++.+.+.|..+++.+
T Consensus 75 ~p~~i~v~~~~~~vyv~~-~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTT-GDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred cccceeeCCCCCeEEEec-CCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 335678888888777653 3356899999765544333 211 4457999999999998875434689999999988877
Q ss_pred EeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE-------eccCceEEEEEecCCCCCCCC
Q 020756 162 GTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK-------KMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 162 ~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~-------~~~~~~~~~~w~P~~~~~~~~ 229 (321)
.+.... ....+.++|+|..+..+.. .++.+.+.+.++..+.. .....-+.+.++|+...+|-.
T Consensus 154 ~~~~vG~~P~~~a~~p~g~~vyv~~~-----~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~ 224 (381)
T COG3391 154 ATIPVGNTPTGVAVDPDGNKVYVTNS-----DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVA 224 (381)
T ss_pred EEEecCCCcceEEECCCCCeEEEEec-----CCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEE
Confidence 765443 3478999999998887774 48999999987776653 122345778999998877754
No 302
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.28 E-value=0.0047 Score=61.96 Aligned_cols=98 Identities=15% Similarity=0.239 Sum_probs=71.0
Q ss_pred CcCCCEEEEEEccCCCeEEEEeCC-CceeEEeC-CcCeeeEEEcCC-----CCeEEEEccCCCCCcEEEEECC---CCeE
Q 020756 91 SYSGSEFAVVYGFMPASATIFNKK-CRPILELG-SGPYNTVRWNPK-----GKFLCLAGFGNLPGDMAFWDYV---DGKQ 160 (321)
Q Consensus 91 sP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~~-~~~~~~~~~sPd-----G~~l~~~g~~n~~g~i~iwD~~---~~~~ 160 (321)
.-+|.++++| .+||++.|..+- .+..+++. ..++.+++++|| .+.++++| ..| +.++..+ +...
T Consensus 80 ~~~Gey~asC--S~DGkv~I~sl~~~~~~~~~df~rpiksial~Pd~~~~~sk~fv~GG---~ag-lvL~er~wlgnk~~ 153 (846)
T KOG2066|consen 80 ILEGEYVASC--SDDGKVVIGSLFTDDEITQYDFKRPIKSIALHPDFSRQQSKQFVSGG---MAG-LVLSERNWLGNKDS 153 (846)
T ss_pred ccCCceEEEe--cCCCcEEEeeccCCccceeEecCCcceeEEeccchhhhhhhheeecC---cce-EEEehhhhhcCccc
Confidence 5579999997 779999998773 33444342 678999999998 56788888 777 7776533 2222
Q ss_pred E-EeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756 161 L-GTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 203 (321)
Q Consensus 161 i-~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g 203 (321)
+ ..-....+.++.| .|.+||.+. |-++++||...
T Consensus 154 v~l~~~eG~I~~i~W--~g~lIAWan-------d~Gv~vyd~~~ 188 (846)
T KOG2066|consen 154 VVLSEGEGPIHSIKW--RGNLIAWAN-------DDGVKVYDTPT 188 (846)
T ss_pred eeeecCccceEEEEe--cCcEEEEec-------CCCcEEEeccc
Confidence 3 2222237888999 688999999 99999999843
No 303
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.27 E-value=0.0064 Score=54.44 Aligned_cols=105 Identities=18% Similarity=0.288 Sum_probs=73.9
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCC-eEEEEeCCCc-eeEEe----CCcCeeeEEEcCCCCeEEEE--ccCCCCCcEEE
Q 020756 81 KEGPVHDVQWSYSGSEFAVVYGFMPA-SATIFNKKCR-PILEL----GSGPYNTVRWNPKGKFLCLA--GFGNLPGDMAF 152 (321)
Q Consensus 81 ~~~~v~~~~wsP~g~~l~~~~g~~~~-~i~i~d~~~~-~~~~~----~~~~~~~~~~sPdG~~l~~~--g~~n~~g~i~i 152 (321)
-....|++.++|....-++. ...|+ -..+||..+. ....+ +......=.|||||++|..+ +|.+..|-|-|
T Consensus 66 lpaR~Hgi~~~p~~~ravaf-ARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGv 144 (366)
T COG3490 66 LPARGHGIAFHPALPRAVAF-ARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGV 144 (366)
T ss_pred cccccCCeecCCCCcceEEE-EecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEE
Confidence 34677899999976543332 35677 5678998543 22232 22233445899999999886 44445789999
Q ss_pred EECCCC-eEEEeeeCC--CeeeEEEccCCCEEEEEEc
Q 020756 153 WDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATT 186 (321)
Q Consensus 153 wD~~~~-~~i~~~~~~--~~~~~~wSpdG~~l~t~~s 186 (321)
||.+.+ ..+..+..+ ....+.|.+||+.|+.+..
T Consensus 145 Yd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 145 YDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred EecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 998755 677777776 5678999999999998764
No 304
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.00087 Score=67.42 Aligned_cols=111 Identities=19% Similarity=0.234 Sum_probs=80.0
Q ss_pred EEEEECcCCCEEEEEE--ccCCCeEEEEeCCCceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEE
Q 020756 86 HDVQWSYSGSEFAVVY--GFMPASATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLG 162 (321)
Q Consensus 86 ~~~~wsP~g~~l~~~~--g~~~~~i~i~d~~~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~ 162 (321)
+-..|+|.--.|++++ ....|.++||--.+++-... -.-.+.++.|+|.--.|+.+= ..|.+.||...+.+.-+
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~hatSLCWHpe~~vLa~gw---e~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVHATSLCWHPEEFVLAQGW---EMGVSDVQKTNTTETHT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEecCCCCCcccccceehhhhccChHHHHHhhcc---ccceeEEEecCCceeee
Confidence 3468999999999875 33456899996666655544 233456799999654444443 45899999987665444
Q ss_pred eeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec--Cce
Q 020756 163 TTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN--GSL 205 (321)
Q Consensus 163 ~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~--g~~ 205 (321)
....| .+..+.|||+|..++++.. -+.+.+|.++ |+.
T Consensus 96 v~~th~a~i~~l~wS~~G~~l~t~d~------~g~v~lwr~d~~g~~ 136 (1416)
T KOG3617|consen 96 VVETHPAPIQGLDWSHDGTVLMTLDN------PGSVHLWRYDVIGEI 136 (1416)
T ss_pred eccCCCCCceeEEecCCCCeEEEcCC------CceeEEEEeeecccc
Confidence 44334 7888999999999999984 7789999886 553
No 305
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.23 E-value=0.15 Score=48.47 Aligned_cols=201 Identities=12% Similarity=0.171 Sum_probs=127.4
Q ss_pred eEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee-eecCCCCC
Q 020756 6 SVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL-VPLRKEGP 84 (321)
Q Consensus 6 ~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~-v~l~~~~~ 84 (321)
.|.+.+... ...+....... ....+.++++|.++.+.-.. + +...+..++........ +... ..|
T Consensus 97 ~v~vid~~~---~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~-----~----~~~~vsvid~~t~~~~~~~~vG-~~P 162 (381)
T COG3391 97 TVSVIDTAT---NTVLGSIPVGL-GPVGLAVDPDGKYVYVANAG-----N----GNNTVSVIDAATNKVTATIPVG-NTP 162 (381)
T ss_pred eEEEEcCcc---cceeeEeeecc-CCceEEECCCCCEEEEEecc-----c----CCceEEEEeCCCCeEEEEEecC-CCc
Confidence 455555444 34444555444 77789999999999885210 0 23446666665543222 2222 235
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEE------eC-CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756 85 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILE------LG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 157 (321)
Q Consensus 85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~------~~-~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~ 157 (321)
..++++|+|..+.++. ..+..+.++|..+..+.. .. ...-..+.++|+|.++.+....+.++.+...|..+
T Consensus 163 -~~~a~~p~g~~vyv~~-~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~ 240 (381)
T COG3391 163 -TGVAVDPDGNKVYVTN-SDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTAT 240 (381)
T ss_pred -ceEEECCCCCeEEEEe-cCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCC
Confidence 8999999999888874 446799999987776653 22 12235689999999888876544557899999988
Q ss_pred CeEEEe-eeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEE-e-c----cCceEEEEEecCCCCCC
Q 020756 158 GKQLGT-TRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFK-K-M----FDKLFQAEWKPVSPDKF 227 (321)
Q Consensus 158 ~~~i~~-~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~-~-~----~~~~~~~~w~P~~~~~~ 227 (321)
+..... .... ....+..+|+|.++....+ ..+.+.+-|.....+.. . . ....+.+.+.+.....+
T Consensus 241 ~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~-----~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (381)
T COG3391 241 GNVTATDLPVGSGAPRGVAVDPAGKAAYVANS-----QGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLYDTNY 314 (381)
T ss_pred ceEEEeccccccCCCCceeECCCCCEEEEEec-----CCCeEEEEeCCCCceeeeecccccccccceeccceeeccccc
Confidence 866654 2211 2456899999999998875 25778887775443322 1 1 11355666666543333
No 306
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.13 E-value=0.27 Score=47.09 Aligned_cols=198 Identities=11% Similarity=0.048 Sum_probs=107.0
Q ss_pred ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCcee--eeecCCC
Q 020756 5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG--LVPLRKE 82 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~--~v~l~~~ 82 (321)
..|+|+++.+ ++.+.. .+-......+.|.++|+.+++....+...+..+. -...+|+..+...... .+--...
T Consensus 150 ~~l~v~Dl~t---g~~l~d-~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~-~~~~v~~~~~gt~~~~d~lvfe~~~ 224 (414)
T PF02897_consen 150 YTLRVFDLET---GKFLPD-GIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSG-YPRQVYRHKLGTPQSEDELVFEEPD 224 (414)
T ss_dssp EEEEEEETTT---TEEEEE-EEEEEESEEEEECTTSSEEEEEECSTTTSS-CCG-CCEEEEEEETTS-GGG-EEEEC-TT
T ss_pred EEEEEEECCC---CcCcCC-cccccccceEEEeCCCCEEEEEEeCcccccccCC-CCcEEEEEECCCChHhCeeEEeecC
Confidence 3588888888 554432 2222222239999999998886422211100111 1234777776555433 2221222
Q ss_pred -CC-eEEEEECcCCCEEEEEEc-cCC-CeEEEEeCCCc-----eeEEe--CC-cCeeeEEEcCCCCeEEEEccCCCCCcE
Q 020756 83 -GP-VHDVQWSYSGSEFAVVYG-FMP-ASATIFNKKCR-----PILEL--GS-GPYNTVRWNPKGKFLCLAGFGNLPGDM 150 (321)
Q Consensus 83 -~~-v~~~~wsP~g~~l~~~~g-~~~-~~i~i~d~~~~-----~~~~~--~~-~~~~~~~~sPdG~~l~~~g~~n~~g~i 150 (321)
.- ..++.+++||+++++... ... ..+.+.|+... ....+ .. +....+... .+.+++.+..+...+.|
T Consensus 225 ~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l 303 (414)
T PF02897_consen 225 EPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRL 303 (414)
T ss_dssp CTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EE
T ss_pred CCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEE
Confidence 23 568999999998887543 333 46777788542 33333 22 333444444 45566666533346788
Q ss_pred EEEECCCCe----EEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-CceeEEecc
Q 020756 151 AFWDYVDGK----QLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLFFKKMF 211 (321)
Q Consensus 151 ~iwD~~~~~----~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l~~~~~ 211 (321)
.-.++.+.. ....+.. ..+.-..++..+.+|+.... ..+...|+++++. +........
T Consensus 304 ~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~---~~~~~~l~v~~~~~~~~~~~~~~ 367 (414)
T PF02897_consen 304 VAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYR---ENGSSRLRVYDLDDGKESREIPL 367 (414)
T ss_dssp EEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEE---ETTEEEEEEEETT-TEEEEEEES
T ss_pred EEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEE---ECCccEEEEEECCCCcEEeeecC
Confidence 888888664 2222332 24455577778888887763 1123458889988 776655444
No 307
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=97.12 E-value=0.0052 Score=56.10 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=60.2
Q ss_pred CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCcee--EEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC
Q 020756 80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI--LEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 155 (321)
Q Consensus 80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~--~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~ 155 (321)
.|.+.+.+..|.|....|.. |..+..+.+||+-+..- ..+ |...+..+.+-+.-+.|.+++ .||.|.+||+
T Consensus 195 ~h~~~~~~l~Wd~~~~~LfS--g~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~---edg~i~~w~m 269 (404)
T KOG1409|consen 195 GHTGEVTCLKWDPGQRLLFS--GASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCG---EDGGIVVWNM 269 (404)
T ss_pred CcccceEEEEEcCCCcEEEe--ccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeecc---CCCeEEEEec
Confidence 47899999999998877777 57788999999955422 222 778888999999999999999 9999999998
Q ss_pred CC
Q 020756 156 VD 157 (321)
Q Consensus 156 ~~ 157 (321)
+.
T Consensus 270 n~ 271 (404)
T KOG1409|consen 270 NV 271 (404)
T ss_pred cc
Confidence 75
No 308
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.11 E-value=0.029 Score=53.76 Aligned_cols=117 Identities=15% Similarity=0.188 Sum_probs=73.2
Q ss_pred eEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeE-EEEECcCCCEEEEEEccC-------
Q 020756 33 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVH-DVQWSYSGSEFAVVYGFM------- 104 (321)
Q Consensus 33 ~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~-~~~wsP~g~~l~~~~g~~------- 104 (321)
.+.+||+|+++++..+ ..|.-.+ .|+.+++..+....-.+ ...-. .+.|.+||+.|+...-..
T Consensus 128 ~~~~Spdg~~la~~~s----~~G~e~~---~l~v~Dl~tg~~l~d~i--~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~ 198 (414)
T PF02897_consen 128 GFSVSPDGKRLAYSLS----DGGSEWY---TLRVFDLETGKFLPDGI--ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDS 198 (414)
T ss_dssp EEEETTTSSEEEEEEE----ETTSSEE---EEEEEETTTTEEEEEEE--EEEESEEEEECTTSSEEEEEECSTTTSS-CC
T ss_pred eeeECCCCCEEEEEec----CCCCceE---EEEEEECCCCcCcCCcc--cccccceEEEeCCCCEEEEEEeCcccccccC
Confidence 4678999999999753 3343322 47888886652211111 12222 399999999887764222
Q ss_pred --CCeEEEEeCCCc-----eeEEeCC-cC-eeeEEEcCCCCeEEEEccCCCC-CcEEEEECCCC
Q 020756 105 --PASATIFNKKCR-----PILELGS-GP-YNTVRWNPKGKFLCLAGFGNLP-GDMAFWDYVDG 158 (321)
Q Consensus 105 --~~~i~i~d~~~~-----~~~~~~~-~~-~~~~~~sPdG~~l~~~g~~n~~-g~i~iwD~~~~ 158 (321)
+..|.+|.+... .++.-.. .. ...+..++||++|++....... ..+++.|+..+
T Consensus 199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 456888888543 2333322 22 5678999999999886544445 68999999874
No 309
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0026 Score=62.25 Aligned_cols=89 Identities=15% Similarity=0.234 Sum_probs=69.3
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe--CCcCee-eEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYN-TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 159 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~-~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~ 159 (321)
..|.-+.|+|.-..||+. ...+.+.++-+....+-++ +...+. +++|.|||++|+++= .||+|.+.|+.++.
T Consensus 21 ~~i~~~ewnP~~dLiA~~--t~~gelli~R~n~qRlwtip~p~~~v~~sL~W~~DGkllaVg~---kdG~I~L~Dve~~~ 95 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATR--TEKGELLIHRLNWQRLWTIPIPGENVTASLCWRPDGKLLAVGF---KDGTIRLHDVEKGG 95 (665)
T ss_pred cceEEEEEcCccchhhee--ccCCcEEEEEeccceeEeccCCCCccceeeeecCCCCEEEEEe---cCCeEEEEEccCCC
Confidence 456789999999999985 6677888877766556555 455555 999999999999986 78999999999998
Q ss_pred EEEeeeC---CCeeeEEEcc
Q 020756 160 QLGTTRA---ECSVTSEWSP 176 (321)
Q Consensus 160 ~i~~~~~---~~~~~~~wSp 176 (321)
.+..+.. ..++..-|++
T Consensus 96 ~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 96 RLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ceeccccccccchheeeccc
Confidence 7776322 2677778863
No 310
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.02 E-value=0.11 Score=46.34 Aligned_cols=177 Identities=14% Similarity=0.138 Sum_probs=94.5
Q ss_pred CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 020756 29 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA 108 (321)
Q Consensus 29 ~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i 108 (321)
.+...+.|+|+.+.|.++. |.. ..|+.++..|.-.+.+++...+..-++++--+|.+ ++. ...++.+
T Consensus 22 ~e~SGLTy~pd~~tLfaV~----d~~-------~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~-vl~-~Er~~~L 88 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAVQ----DEP-------GEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRY-VLS-EERDQRL 88 (248)
T ss_dssp S-EEEEEEETTTTEEEEEE----TTT-------TEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEE-EEE-ETTTTEE
T ss_pred CCccccEEcCCCCeEEEEE----CCC-------CEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEE-EEE-EcCCCcE
Confidence 3567899999988877763 222 23788888888778888877778889999877744 443 3557789
Q ss_pred EEEeCC--Cc-----eeE--Ee-----CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC--CCCeE-EEe--------
Q 020756 109 TIFNKK--CR-----PIL--EL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY--VDGKQ-LGT-------- 163 (321)
Q Consensus 109 ~i~d~~--~~-----~~~--~~-----~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~--~~~~~-i~~-------- 163 (321)
.++++. +. .+. .+ ++..+..++|.|.++.|+++--.+ ...|+-++. ..... +..
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~-P~~l~~~~~~~~~~~~~~~~~~~~~~~~ 167 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERK-PKRLYEVNGFPGGFDLFVSDDQDLDDDK 167 (248)
T ss_dssp EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESS-SEEEEEEESTT-SS--EEEE-HHHH-HT
T ss_pred EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCC-ChhhEEEccccCccceeecccccccccc
Confidence 888772 11 111 22 234578899999887777764111 123444443 11111 111
Q ss_pred eeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEecc-----------CceEEEEEecCCC
Q 020756 164 TRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMF-----------DKLFQAEWKPVSP 224 (321)
Q Consensus 164 ~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~-----------~~~~~~~w~P~~~ 224 (321)
......+.++++|...+|+.-+. ....+.++|.+|+.+..... ..--.+++.+++.
T Consensus 168 ~~~~d~S~l~~~p~t~~lliLS~-----es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~ 234 (248)
T PF06977_consen 168 LFVRDLSGLSYDPRTGHLLILSD-----ESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN 234 (248)
T ss_dssp --SS---EEEEETTTTEEEEEET-----TTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--
T ss_pred ceeccccceEEcCCCCeEEEEEC-----CCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCC
Confidence 11125677899997554544443 46778888888886632211 2345677777653
No 311
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.01 E-value=0.031 Score=58.75 Aligned_cols=115 Identities=14% Similarity=0.146 Sum_probs=78.3
Q ss_pred eecC-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc--------eeE--Ee-CCcCee-eEEEcC-CCC-eEEEE
Q 020756 77 VPLR-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--------PIL--EL-GSGPYN-TVRWNP-KGK-FLCLA 141 (321)
Q Consensus 77 v~l~-~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~--------~~~--~~-~~~~~~-~~~~sP-dG~-~l~~~ 141 (321)
.+.. ....+..+...+.|+.||+. ..||.+.+++++-. +.. .. ..+.+. ..+|.- .+. .|+.+
T Consensus 1092 ltys~~~sr~~~vt~~~~~~~~Av~--t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~ 1169 (1431)
T KOG1240|consen 1092 LTYSPEGSRVEKVTMCGNGDQFAVS--TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYA 1169 (1431)
T ss_pred EEEeccCCceEEEEeccCCCeEEEE--cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEE
Confidence 3334 46788899999999999995 77999999987431 111 11 122222 233333 234 44445
Q ss_pred ccCCCCCcEEEEECCCCeEEE----eeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756 142 GFGNLPGDMAFWDYVDGKQLG----TTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 142 g~~n~~g~i~iwD~~~~~~i~----~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
. ..+.|..||+.....+- ...+..+++++.+|.+.+++.|++ .+.+.+||+.
T Consensus 1170 T---~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts------~G~l~lWDLR 1225 (1431)
T KOG1240|consen 1170 T---DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTS------RGQLVLWDLR 1225 (1431)
T ss_pred E---eccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecC------CceEEEEEee
Confidence 4 56889999998764332 333448999999999999999997 7789999984
No 312
>PRK10115 protease 2; Provisional
Probab=96.99 E-value=0.096 Score=53.79 Aligned_cols=115 Identities=9% Similarity=0.055 Sum_probs=72.1
Q ss_pred ceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc----CCCe
Q 020756 32 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF----MPAS 107 (321)
Q Consensus 32 ~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~----~~~~ 107 (321)
..+.|||+|++|++. .|..|.-.+ .|+.++..++....-.+ .+.-..++|++|++.|++..-. .+..
T Consensus 130 ~~~~~Spdg~~la~~----~d~~G~E~~---~l~v~d~~tg~~l~~~i--~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 130 GGMAITPDNTIMALA----EDFLSRRQY---GIRFRNLETGNWYPELL--DNVEPSFVWANDSWTFYYVRKHPVTLLPYQ 200 (686)
T ss_pred eEEEECCCCCEEEEE----ecCCCcEEE---EEEEEECCCCCCCCccc--cCcceEEEEeeCCCEEEEEEecCCCCCCCE
Confidence 357899999999887 445555443 47888886552111111 1222569999999988776421 3347
Q ss_pred EEEEeCCCc-----eeEEeCCcCeeeEEEcC-CCCeEEEEccCCCCCcEEEEEC
Q 020756 108 ATIFNKKCR-----PILELGSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDY 155 (321)
Q Consensus 108 i~i~d~~~~-----~~~~~~~~~~~~~~~sP-dG~~l~~~g~~n~~g~i~iwD~ 155 (321)
+.++++.+. .++.-.........|.+ |++++++....+.++.+.+|+.
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 888888543 23332223333334444 9999888766666788999994
No 313
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=96.92 E-value=0.0089 Score=54.71 Aligned_cols=124 Identities=14% Similarity=0.165 Sum_probs=80.9
Q ss_pred cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEc--CCCceeeeecCCCCCeEEEEECc-CCCEEEEEEccC
Q 020756 28 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT--DGTHEGLVPLRKEGPVHDVQWSY-SGSEFAVVYGFM 104 (321)
Q Consensus 28 ~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~--~g~~~~~v~l~~~~~v~~~~wsP-~g~~l~~~~g~~ 104 (321)
+.|+..+.|.-.+..+..-+. + |+...+.+.. .|...+..-+-|...|++++.-. ++++|.+ .+|
T Consensus 252 ksDVfAlQf~~s~nLv~~GcR-----n-----geI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~Lma--S~M 319 (425)
T KOG2695|consen 252 KSDVFALQFAGSDNLVFNGCR-----N-----GEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMA--SDM 319 (425)
T ss_pred chhHHHHHhcccCCeeEeccc-----C-----CcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEee--ccC
Confidence 456666666665555444321 1 3322233322 23345555667888999988876 5555555 589
Q ss_pred CCeEEEEeCCC----ceeEEeCCcCeeeEE-----EcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC
Q 020756 105 PASATIFNKKC----RPILELGSGPYNTVR-----WNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE 167 (321)
Q Consensus 105 ~~~i~i~d~~~----~~~~~~~~~~~~~~~-----~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~ 167 (321)
+++|++||++. +.+.+. .+++|..+ ..|...+|+.+| .|...+||.++++.++.++.-+
T Consensus 320 ~gkikLyD~R~~K~~~~V~qY-eGHvN~~a~l~~~v~~eeg~I~s~G---dDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 320 TGKIKLYDLRATKCKKSVMQY-EGHVNLSAYLPAHVKEEEGSIFSVG---DDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cCceeEeeehhhhcccceeee-ecccccccccccccccccceEEEcc---CeeEEEEEecccCceeeccCCC
Confidence 99999999853 224444 45555544 445667888888 8999999999999999987765
No 314
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.91 E-value=0.0047 Score=61.48 Aligned_cols=146 Identities=18% Similarity=0.269 Sum_probs=97.9
Q ss_pred eEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCC--CCeEEEEECcCCC--EEEEEEccCCCeE
Q 020756 33 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKE--GPVHDVQWSYSGS--EFAVVYGFMPASA 108 (321)
Q Consensus 33 ~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~--~~v~~~~wsP~g~--~l~~~~g~~~~~i 108 (321)
.+.-+|.|+-+++. +.+| ||.++++.......-+.|- -.|-+++|||... +-+| ...+.+.
T Consensus 29 a~si~p~grdi~lA----------sr~g---l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiV--sts~qka 93 (1081)
T KOG0309|consen 29 AVSINPSGRDIVLA----------SRQG---LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIV--STSNQKA 93 (1081)
T ss_pred ceeeccccchhhhh----------hhcC---eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEE--ecCcchh
Confidence 45567888877653 2233 7888887665554444543 4578999998654 4444 3556678
Q ss_pred EEEeCC--CceeEEe----CCcCeeeEEEcCCCC-eEEEEccCCCCCcEEEEECCCC-eEEEeeeC--CCeeeEEEccCC
Q 020756 109 TIFNKK--CRPILEL----GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDG-KQLGTTRA--ECSVTSEWSPDG 178 (321)
Q Consensus 109 ~i~d~~--~~~~~~~----~~~~~~~~~~sPdG~-~l~~~g~~n~~g~i~iwD~~~~-~~i~~~~~--~~~~~~~wSpdG 178 (321)
.+|++. .....+| |...+..+.|+|+-. .+++++ .+..+..||+++- ..+..+.. ...+++.|+-..
T Consensus 94 iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcs---vdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~ 170 (1081)
T KOG0309|consen 94 IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCS---VDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKD 170 (1081)
T ss_pred hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeecc---ccccceeeeccCCCcceeeeecccccCceeeecccC
Confidence 889873 2222233 567788999999876 456666 8899999999875 44554443 267789999854
Q ss_pred CEEEEEEcCCceeecCcEEEEeec
Q 020756 179 RYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 179 ~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
-.++..+. .+.+.|||..
T Consensus 171 p~vlassh------g~~i~vwd~r 188 (1081)
T KOG0309|consen 171 PNVLASSH------GNDIFVWDLR 188 (1081)
T ss_pred cchhhhcc------CCceEEEecc
Confidence 44554442 8899999983
No 315
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.90 E-value=0.051 Score=54.84 Aligned_cols=136 Identities=14% Similarity=0.302 Sum_probs=89.0
Q ss_pred CCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcC-----CCEEEEEEccCCCeEEEE
Q 020756 37 NRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS-----GSEFAVVYGFMPASATIF 111 (321)
Q Consensus 37 sp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~-----g~~l~~~~g~~~~~i~i~ 111 (321)
+.+|.|++.++. | |...+ ...... ....+.+-..++..++++|+ .++|++ |++.| +.++
T Consensus 80 ~~~Gey~asCS~-D---------Gkv~I--~sl~~~-~~~~~~df~rpiksial~Pd~~~~~sk~fv~--GG~ag-lvL~ 143 (846)
T KOG2066|consen 80 ILEGEYVASCSD-D---------GKVVI--GSLFTD-DEITQYDFKRPIKSIALHPDFSRQQSKQFVS--GGMAG-LVLS 143 (846)
T ss_pred ccCCceEEEecC-C---------CcEEE--eeccCC-ccceeEecCCcceeEEeccchhhhhhhheee--cCcce-EEEe
Confidence 567888877631 1 22222 222222 22333455689999999998 445665 67766 8888
Q ss_pred eCC--Cc--ee-EEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--------CeeeEEEccCC
Q 020756 112 NKK--CR--PI-LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--------CSVTSEWSPDG 178 (321)
Q Consensus 112 d~~--~~--~~-~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--------~~~~~~wSpdG 178 (321)
..+ ++ .+ ..-+.+++.++.|. |++||.+. |-.|.|||+.+++.++.++-+ ....+.|.++.
T Consensus 144 er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan----d~Gv~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~ 217 (846)
T KOG2066|consen 144 ERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN----DDGVKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED 217 (846)
T ss_pred hhhhhcCccceeeecCccceEEEEec--CcEEEEec----CCCcEEEeccccceeeccCCCCCCCCcccCCCceEecCCC
Confidence 653 11 22 22268999999997 99999995 446999999999888776643 22348999998
Q ss_pred CEEEEEEcCCceeecCcEEEEeec
Q 020756 179 RYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 179 ~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
++++--+ .+|+|..+.
T Consensus 218 ~LVIGW~--------d~v~i~~I~ 233 (846)
T KOG2066|consen 218 RLVIGWG--------DSVKICSIK 233 (846)
T ss_pred eEEEecC--------CeEEEEEEe
Confidence 8665433 356666664
No 316
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=96.90 E-value=0.0033 Score=67.98 Aligned_cols=114 Identities=13% Similarity=0.269 Sum_probs=90.4
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC-C-
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-G- 158 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~-~- 158 (321)
..|..+.|+-+|..|.++ ..|+.+.+|...-+++... |+...+.++|- |..++++|..+.++++.+||..- +
T Consensus 2252 s~vtr~~f~~qGnk~~i~--d~dg~l~l~q~~pk~~~s~qchnk~~~Df~Fi--~s~~~tag~s~d~~n~~lwDtl~~~~ 2327 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIV--DGDGDLSLWQASPKPYTSWQCHNKALSDFRFI--GSLLATAGRSSDNRNVCLWDTLLPPM 2327 (2439)
T ss_pred chhhhhhhcccCCceeee--ccCCceeecccCCcceeccccCCccccceeee--ehhhhccccCCCCCcccchhcccCcc
Confidence 567788999999999996 4578999999987777766 66667777776 48888888777889999999542 2
Q ss_pred -eEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee
Q 020756 159 -KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF 206 (321)
Q Consensus 159 -~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l 206 (321)
.++.+-..+.++.+++-|..+.|++++ .++.++|||+..+.+
T Consensus 2328 ~s~v~~~H~~gaT~l~~~P~~qllisgg------r~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2328 NSLVHTCHDGGATVLAYAPKHQLLISGG------RKGEVCLFDIRQRQL 2370 (2439)
T ss_pred cceeeeecCCCceEEEEcCcceEEEecC------CcCcEEEeehHHHHH
Confidence 455544344899999999999999999 599999999965443
No 317
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=96.88 E-value=0.0035 Score=55.26 Aligned_cols=71 Identities=14% Similarity=0.219 Sum_probs=59.0
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc--eeEEe--CCcCeeeEEEcC-CCCeEEEEccCCCCCcEEEEECCC
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PILEL--GSGPYNTVRWNP-KGKFLCLAGFGNLPGDMAFWDYVD 157 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~--~~~~~--~~~~~~~~~~sP-dG~~l~~~g~~n~~g~i~iwD~~~ 157 (321)
..|+.++=+|..++++++ |..++.+.+||.+.. +...+ |+.+++.+.|+| ++..|++++ .+|.++-||..+
T Consensus 180 ~~v~~l~~hp~qq~~v~c-gt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s---edGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCC-GTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS---EDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEE-ecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec---CCCcEEEEcCCC
Confidence 458899999988888777 788999999999754 33333 899999999999 678999998 899999999864
No 318
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=96.81 E-value=0.0023 Score=60.77 Aligned_cols=141 Identities=15% Similarity=0.171 Sum_probs=89.9
Q ss_pred CCCceEEEEEcCCcCCC------Cceeeee---cccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC
Q 020756 2 GSPASVQIYACGKDLQS------QPLARRS---FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT 72 (321)
Q Consensus 2 g~p~~v~v~~~~~~~~~------~~i~~~~---~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~ 72 (321)
|.|..+|||+.+..... ...+... -+.+.+..+.+|.+|.-|++.. ....+|+......
T Consensus 301 G~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY------------nDe~IYLF~~~~~ 368 (559)
T KOG1334|consen 301 GSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY------------NDEDIYLFNKSMG 368 (559)
T ss_pred ChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee------------cccceEEeccccc
Confidence 67888999999874200 1112222 2345666788898887776642 2333565533221
Q ss_pred c-------------eeeeecCC--CCCeEEEEE-CcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcC
Q 020756 73 H-------------EGLVPLRK--EGPVHDVQW-SYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNP 133 (321)
Q Consensus 73 ~-------------~~~v~l~~--~~~v~~~~w-sP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sP 133 (321)
. ..++-..| ...|..+-| -|...+++. |..-|.|.||+.++..+..+ ...-||||.=+|
T Consensus 369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvS--GSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP 446 (559)
T KOG1334|consen 369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVS--GSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP 446 (559)
T ss_pred cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEe--cCccceEEEEecchhHHHHHhhcccceEeccCCCC
Confidence 1 11111122 235667776 465555444 66667999999987766555 345899999999
Q ss_pred CCCeEEEEccCCCCCcEEEEECCCCe
Q 020756 134 KGKFLCLAGFGNLPGDMAFWDYVDGK 159 (321)
Q Consensus 134 dG~~l~~~g~~n~~g~i~iwD~~~~~ 159 (321)
.--.||++| .+..|+||-..+-+
T Consensus 447 ~~PvLAsSG---id~DVKIWTP~~~e 469 (559)
T KOG1334|consen 447 HLPVLASSG---IDHDVKIWTPLTAE 469 (559)
T ss_pred CCchhhccC---CccceeeecCCccc
Confidence 999999999 99999999874443
No 319
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=96.73 E-value=0.041 Score=55.38 Aligned_cols=130 Identities=12% Similarity=0.150 Sum_probs=82.2
Q ss_pred EEEEEcCCCceeeeecCCCCCeEEEEECcC----------CCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEE
Q 020756 64 LNYLTTDGTHEGLVPLRKEGPVHDVQWSYS----------GSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVR 130 (321)
Q Consensus 64 l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~----------g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~ 130 (321)
+..++...-+.-+.--.|...|+.+.|.|- ...+.++.++..|+|.+||.... .+..+ +..++..+.
T Consensus 37 V~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~ 116 (1062)
T KOG1912|consen 37 VSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLC 116 (1062)
T ss_pred EEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhhee
Confidence 455554433221211236788999999762 23455555777889999998543 33333 566777776
Q ss_pred EcC---CCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEcc-CCCEEEEEEcCCceeecCcEEEEee
Q 020756 131 WNP---KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIFHH 201 (321)
Q Consensus 131 ~sP---dG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSp-dG~~l~t~~s~~rl~~d~~v~iw~~ 201 (321)
|-| +.+.++++-. ....|-+|+..+|+++=..... ...++.+.| |.+++..-++ .+.+.+.++
T Consensus 117 W~~~rd~Srd~LlaIh--~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s------~g~vl~~~~ 185 (1062)
T KOG1912|consen 117 WVPARDDSRDVLLAIH--GSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGS------KGFVLSCKD 185 (1062)
T ss_pred eeeccCcchheeEEec--CCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEcc------CceEEEEec
Confidence 665 5545444432 3378999999999887665553 344588888 7788777764 666666655
No 320
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=96.71 E-value=0.001 Score=66.87 Aligned_cols=93 Identities=11% Similarity=0.227 Sum_probs=83.3
Q ss_pred CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEE
Q 020756 122 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 199 (321)
Q Consensus 122 ~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw 199 (321)
|...|.|..|.-.|++|++++ .|.-++||.+++..++.+..+| .++.++.+.+.-++++++. |.-|++|
T Consensus 189 H~naVyca~fDrtg~~Iitgs---dd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~------D~vIrvW 259 (1113)
T KOG0644|consen 189 HRNAVYCAIFDRTGRYIITGS---DDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASN------DKVIRVW 259 (1113)
T ss_pred hhhheeeeeeccccceEeecC---ccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhccc------CceEEEE
Confidence 667789999999999999998 8999999999999999999888 7999999999999999984 9999999
Q ss_pred ee-cCcee--EEeccCceEEEEEecCC
Q 020756 200 HH-NGSLF--FKKMFDKLFQAEWKPVS 223 (321)
Q Consensus 200 ~~-~g~~l--~~~~~~~~~~~~w~P~~ 223 (321)
-+ +|..+ ..+|.+.|..++|+|..
T Consensus 260 rl~~~~pvsvLrghtgavtaiafsP~~ 286 (1113)
T KOG0644|consen 260 RLPDGAPVSVLRGHTGAVTAIAFSPRA 286 (1113)
T ss_pred ecCCCchHHHHhccccceeeeccCccc
Confidence 98 45554 77899999999999976
No 321
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.66 E-value=0.00087 Score=67.77 Aligned_cols=189 Identities=12% Similarity=0.152 Sum_probs=119.5
Q ss_pred CceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC
Q 020756 4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG 83 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~ 83 (321)
-|.|++|++.+ |......+-+++-...+.-+.+|..++..+... . -...||.+...++ .. +...
T Consensus 1122 ~Geik~~nv~s---G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S-----~---PlsaLW~~~s~~~--~~---Hsf~ 1185 (1516)
T KOG1832|consen 1122 AGEIKIFNVSS---GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS-----S---PLSALWDASSTGG--PR---HSFD 1185 (1516)
T ss_pred cceEEEEEccC---ccccccccccccccccccccCCcceeeeecccc-----C---chHHHhccccccC--cc---cccc
Confidence 47899999999 777777788888888999999999988864211 0 0122444332222 11 1234
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeEEe------CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756 84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PILEL------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 156 (321)
Q Consensus 84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~~~------~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~ 156 (321)
.-+.+.|+.... +.++ |.....+.|||+.+. +..++ ..-..|...|||+..+|+--| -+||++
T Consensus 1186 ed~~vkFsn~~q-~r~~-gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIlndG--------vLWDvR 1255 (1516)
T KOG1832|consen 1186 EDKAVKFSNSLQ-FRAL-GTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILNDG--------VLWDVR 1255 (1516)
T ss_pred ccceeehhhhHH-HHHh-cccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEeeCc--------eeeeec
Confidence 456788887643 3333 455568999999543 44332 123458899999999887654 379998
Q ss_pred CCeEEEeeeCCCee-eEEEccCCCEEEEEEcCCceeecCcEEEEeecC-ceeEEeccCceEEEEEecCCCCCCCC
Q 020756 157 DGKQLGTTRAECSV-TSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 157 ~~~~i~~~~~~~~~-~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g-~~l~~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
..+.|..|....++ .=.|+|.|.-++.-+ .|||+.. ++++....=.-+.+.|+-.+.-+|..
T Consensus 1256 ~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----------EIwD~RTF~lLh~VP~Ldqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1256 IPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----------EIWDMRTFKLLHSVPSLDQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred cHHHHhhhhhheecccccccCCCceEEeec-----------hhhhhHHHHHHhcCccccceEEEeccCccchhhh
Confidence 88888877765332 247999999988877 5676633 22332222233445555555555543
No 322
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=96.65 E-value=0.12 Score=50.17 Aligned_cols=117 Identities=16% Similarity=0.246 Sum_probs=67.0
Q ss_pred CCEEEEEEccCCCeEEEEeCC-CceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC--------------
Q 020756 94 GSEFAVVYGFMPASATIFNKK-CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-------------- 158 (321)
Q Consensus 94 g~~l~~~~g~~~~~i~i~d~~-~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~-------------- 158 (321)
|..|++.. +..|.+||.. ++.+.++.-.++..+.||++|+++++.+ . ..++|++.+..
T Consensus 117 G~LL~~~~---~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t---~-~~i~il~~~~~~~~~~~~~g~e~~f 189 (443)
T PF04053_consen 117 GNLLGVKS---SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVT---K-DSIYILKYNLEAVAAIPEEGVEDAF 189 (443)
T ss_dssp SSSEEEEE---TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE----S--SEEEEEE-HHHHHHBTTTB-GGGE
T ss_pred CcEEEEEC---CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEe---C-CeEEEEEecchhcccccccCchhce
Confidence 88787752 3379999996 5677888766689999999999999996 3 47888765433
Q ss_pred eEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEecc-CceEEEEEecCCCCCCC
Q 020756 159 KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMF-DKLFQAEWKPVSPDKFG 228 (321)
Q Consensus 159 ~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~-~~~~~~~w~P~~~~~~~ 228 (321)
..+..+ ...+.+..|.-| -|+..+ .+.++. =+.|+.-...+. ..+|-+.+.|....+|.
T Consensus 190 ~~~~E~-~~~IkSg~W~~d--~fiYtT-------~~~lkY-l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~ 249 (443)
T PF04053_consen 190 ELIHEI-SERIKSGCWVED--CFIYTT-------SNHLKY-LVNGETGIIAHLDKPLYLLGYLPKENRLYL 249 (443)
T ss_dssp EEEEEE--S--SEEEEETT--EEEEE--------TTEEEE-EETTEEEEEEE-SS--EEEEEETTTTEEEE
T ss_pred EEEEEe-cceeEEEEEEcC--EEEEEc-------CCeEEE-EEcCCcceEEEcCCceEEEEEEccCCEEEE
Confidence 222222 347888899887 555555 235555 245554433333 36777777775555553
No 323
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.62 E-value=0.41 Score=44.24 Aligned_cols=179 Identities=9% Similarity=0.118 Sum_probs=94.5
Q ss_pred ceEEEEEcCCcCCCCceeeeecccCccc----eEEeCCC----CCeeEEEEEecccCCCceeecceeEEEEEcCCC----
Q 020756 5 ASVQIYACGKDLQSQPLARRSFFRCSTV----QLNWNRG----STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT---- 72 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~----~~~Wsp~----G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~---- 72 (321)
+.|+|++--+ .+.+.+..|-..+.+ .+.+..+ -.+|++.+............|. |+++.+...
T Consensus 2 s~i~l~d~~~---~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gr--i~v~~i~~~~~~~ 76 (321)
T PF03178_consen 2 SSIRLVDPTT---FEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGR--ILVFEISESPENN 76 (321)
T ss_dssp -EEEEEETTT---SSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EE--EEEEEECSS----
T ss_pred cEEEEEeCCC---CeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcE--EEEEEEEcccccc
Confidence 4678888777 456666665443332 2223322 3455554432211111111143 444444442
Q ss_pred --ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCce-eEEe--CCcCeeeEEEcCCCCeEEEEccCCCC
Q 020756 73 --HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILEL--GSGPYNTVRWNPKGKFLCLAGFGNLP 147 (321)
Q Consensus 73 --~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~-~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~ 147 (321)
-........+++|++++-- +..|+++.| .++.+|++.... +... ...+.........+++|+++. ..
T Consensus 77 ~~l~~i~~~~~~g~V~ai~~~--~~~lv~~~g---~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD---~~ 148 (321)
T PF03178_consen 77 FKLKLIHSTEVKGPVTAICSF--NGRLVVAVG---NKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGD---AM 148 (321)
T ss_dssp -EEEEEEEEEESS-EEEEEEE--TTEEEEEET---TEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEE---SS
T ss_pred eEEEEEEEEeecCcceEhhhh--CCEEEEeec---CEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEE---cc
Confidence 1112222357899887765 344666544 589999986554 3332 333334444444477999988 66
Q ss_pred CcEEEE--ECCCC--eEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756 148 GDMAFW--DYVDG--KQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 148 g~i~iw--D~~~~--~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
..|.++ |.... ..+..-... .++++++-+|+..++.+. .++.+.++.+.
T Consensus 149 ~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D------~~gnl~~l~~~ 202 (321)
T PF03178_consen 149 KSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD------KDGNLFVLRYN 202 (321)
T ss_dssp SSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE------TTSEEEEEEE-
T ss_pred cCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc------CCCeEEEEEEC
Confidence 677776 44222 223322222 678888987877777777 38889998885
No 324
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.60 E-value=0.53 Score=42.56 Aligned_cols=144 Identities=13% Similarity=0.154 Sum_probs=83.2
Q ss_pred ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeE--EEEECcCCCEEEEEEccC
Q 020756 27 FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVH--DVQWSYSGSEFAVVYGFM 104 (321)
Q Consensus 27 f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~--~~~wsP~g~~l~~~~g~~ 104 (321)
-.+..-.|.++|.-..-++.+.. .| +..+.++.++..+.++....++... .=.|||||.+|....++.
T Consensus 66 lpaR~Hgi~~~p~~~ravafARr----PG------tf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndf 135 (366)
T COG3490 66 LPARGHGIAFHPALPRAVAFARR----PG------TFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDF 135 (366)
T ss_pred cccccCCeecCCCCcceEEEEec----CC------ceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCC
Confidence 34455567777765555554321 12 2245666666644443333333221 357999999988765443
Q ss_pred C---CeEEEEeCCCc--eeEEeC--CcCeeeEEEcCCCCeEEEEccC------------C---CCCcEEEEECCCCeEEE
Q 020756 105 P---ASATIFNKKCR--PILELG--SGPYNTVRWNPKGKFLCLAGFG------------N---LPGDMAFWDYVDGKQLG 162 (321)
Q Consensus 105 ~---~~i~i~d~~~~--~~~~~~--~~~~~~~~~sPdG~~l~~~g~~------------n---~~g~i~iwD~~~~~~i~ 162 (321)
+ +-|-|||.+.. .+-++. .-.-..+.|.+||+.|+.++-| | +...+-+.|..+|..+.
T Consensus 136 d~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie 215 (366)
T COG3490 136 DPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE 215 (366)
T ss_pred CCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh
Confidence 3 47889998632 333442 2234578999999999987421 1 23456667766666554
Q ss_pred eeeCC------CeeeEEEccCCCE
Q 020756 163 TTRAE------CSVTSEWSPDGRY 180 (321)
Q Consensus 163 ~~~~~------~~~~~~wSpdG~~ 180 (321)
+..-+ .+..++..+||+.
T Consensus 216 kh~Lp~~l~~lSiRHld~g~dgtv 239 (366)
T COG3490 216 KHTLPASLRQLSIRHLDIGRDGTV 239 (366)
T ss_pred hccCchhhhhcceeeeeeCCCCcE
Confidence 43322 4555677777764
No 325
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.60 E-value=0.0078 Score=54.38 Aligned_cols=108 Identities=7% Similarity=0.154 Sum_probs=75.1
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-----eeEEe--------------CCcCeeeEEEcCCCCeEEEEcc
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-----PILEL--------------GSGPYNTVRWNPKGKFLCLAGF 143 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-----~~~~~--------------~~~~~~~~~~sPdG~~l~~~g~ 143 (321)
.-|++..|+|....+... ....|.|.+-|++.. ....+ -...+..+.|+|.|++|++-.+
T Consensus 222 eVItSaeFhp~~cn~fmY-SsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy 300 (460)
T COG5170 222 EVITSAEFHPEMCNVFMY-SSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY 300 (460)
T ss_pred HHHhhcccCHhHcceEEE-ecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc
Confidence 457889999965544432 455789999998632 11111 1235678999999999999762
Q ss_pred CCCCCcEEEEECCCC-eEEEeeeCC--------------Ce---eeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756 144 GNLPGDMAFWDYVDG-KQLGTTRAE--------------CS---VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 201 (321)
Q Consensus 144 ~n~~g~i~iwD~~~~-~~i~~~~~~--------------~~---~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~ 201 (321)
-+|.|||++.. .++.++.-| .+ ..+.||-|..++++++ +.|.+.||-.
T Consensus 301 ----ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgs------y~NNfgiyp~ 366 (460)
T COG5170 301 ----LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGS------YSNNFGIYPT 366 (460)
T ss_pred ----ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccc------cccceeeecc
Confidence 47999998744 455555322 22 2388999999999999 6888888764
No 326
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.60 E-value=0.17 Score=45.15 Aligned_cols=135 Identities=10% Similarity=0.183 Sum_probs=83.3
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC-
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG- 158 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~- 158 (321)
.-+..++|+|+++.|+++ .+.++.|..++++++.+..+ +.+....|.|.-+|.+++... .++.+.++++...
T Consensus 22 ~e~SGLTy~pd~~tLfaV-~d~~~~i~els~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~E---r~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 22 DELSGLTYNPDTGTLFAV-QDEPGEIYELSLDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEE---RDQRLYIFTIDDDT 97 (248)
T ss_dssp S-EEEEEEETTTTEEEEE-ETTTTEEEEEETT--EEEEEE-SS-SSEEEEEE-STTEEEEEET---TTTEEEEEEE----
T ss_pred CCccccEEcCCCCeEEEE-ECCCCEEEEEcCCCCEEEEEeCCCCCCceeEEEECCCEEEEEEc---CCCcEEEEEEeccc
Confidence 348999999987766555 46788999999988877776 456788899998888877765 6789999988432
Q ss_pred -----eEEEeeeC-----C--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC---c-eeEE----------eccC
Q 020756 159 -----KQLGTTRA-----E--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG---S-LFFK----------KMFD 212 (321)
Q Consensus 159 -----~~i~~~~~-----~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g---~-~l~~----------~~~~ 212 (321)
..+..+.- + ..=.++|+|.+..|+.+. ...-..||.+.+ . .+.. ....
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k------E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK------ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE------ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe------CCCChhhEEEccccCccceeeccccccccccceec
Confidence 11222221 1 234599999877777766 355667887765 1 1111 1223
Q ss_pred ceEEEEEecCCCCCC
Q 020756 213 KLFQAEWKPVSPDKF 227 (321)
Q Consensus 213 ~~~~~~w~P~~~~~~ 227 (321)
.+..++++|....++
T Consensus 172 d~S~l~~~p~t~~ll 186 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLL 186 (248)
T ss_dssp ---EEEEETTTTEEE
T ss_pred cccceEEcCCCCeEE
Confidence 677888888766554
No 327
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.16 Score=48.32 Aligned_cols=175 Identities=11% Similarity=0.142 Sum_probs=108.4
Q ss_pred CceEEEEEcCCcCCCCce-eeeecccCccceEEeC-CCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee--ec
Q 020756 4 PASVQIYACGKDLQSQPL-ARRSFFRCSTVQLNWN-RGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV--PL 79 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i-~~~~~f~~~~~~~~Ws-p~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v--~l 79 (321)
..++++|++.++. .+ -.+..|--.-+ .|. ..|..+..++-.. -++++ ++.++..+..-... .-
T Consensus 75 Dhs~KvfDvEn~D---minmiKL~~lPg~a--~wv~skGd~~s~IAVs~-~~sg~-------i~VvD~~~d~~q~~~fkk 141 (558)
T KOG0882|consen 75 DHSVKVFDVENFD---MINMIKLVDLPGFA--EWVTSKGDKISLIAVSL-FKSGK-------IFVVDGFGDFCQDGYFKK 141 (558)
T ss_pred ccceeEEEeeccc---hhhhcccccCCCce--EEecCCCCeeeeEEeec-ccCCC-------cEEECCcCCcCccceecc
Confidence 5678899988843 22 12222222222 343 3454444433221 12222 45555555431111 11
Q ss_pred CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-------ceeEE---------e--CCcCeeeEEEcCCCCeEEEE
Q 020756 80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-------RPILE---------L--GSGPYNTVRWNPKGKFLCLA 141 (321)
Q Consensus 80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-------~~~~~---------~--~~~~~~~~~~sPdG~~l~~~ 141 (321)
-|..||..+.++|-++.+..+ ...|.|.-|...+ +.... + ......++.|+|+|..|...
T Consensus 142 lH~sPV~~i~y~qa~Ds~vSi--D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl 219 (558)
T KOG0882|consen 142 LHFSPVKKIRYNQAGDSAVSI--DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTL 219 (558)
T ss_pred cccCceEEEEeeccccceeec--cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCccccc
Confidence 268899999999999988874 6667899998753 11111 1 23455689999999999998
Q ss_pred ccCCCCCcEEEEECCCCeEEEeeeC--------------------------------C---CeeeEEEccCCCEEEEEEc
Q 020756 142 GFGNLPGDMAFWDYVDGKQLGTTRA--------------------------------E---CSVTSEWSPDGRYFMTATT 186 (321)
Q Consensus 142 g~~n~~g~i~iwD~~~~~~i~~~~~--------------------------------~---~~~~~~wSpdG~~l~t~~s 186 (321)
+ .|..|.+++.++++.+..++. + .-+.+.|.-.|.||+.++
T Consensus 220 ~---~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t- 295 (558)
T KOG0882|consen 220 N---PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGT- 295 (558)
T ss_pred C---cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeec-
Confidence 7 889999999998865443221 1 113367889999999998
Q ss_pred CCceeecCcEEEEeecC
Q 020756 187 APRLQIDNGIKIFHHNG 203 (321)
Q Consensus 187 ~~rl~~d~~v~iw~~~g 203 (321)
--++++.++..
T Consensus 296 ------~~gikvin~~t 306 (558)
T KOG0882|consen 296 ------ILGIKVINLDT 306 (558)
T ss_pred ------ceeEEEEEeec
Confidence 56778877743
No 328
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.016 Score=56.89 Aligned_cols=89 Identities=17% Similarity=0.337 Sum_probs=68.6
Q ss_pred cCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--Cee-eEEEccCCCEEEEEEcCCceeecCcEEEEe
Q 020756 124 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSV-TSEWSPDGRYFMTATTAPRLQIDNGIKIFH 200 (321)
Q Consensus 124 ~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~-~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~ 200 (321)
..+..+.|+|.=.+||+.. .+|.|-++-++ .+.+-++.-+ +++ +++|.|||++||.+-. |++|+|.|
T Consensus 21 ~~i~~~ewnP~~dLiA~~t---~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~k------dG~I~L~D 90 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRT---EKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFK------DGTIRLHD 90 (665)
T ss_pred cceEEEEEcCccchhheec---cCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEec------CCeEEEEE
Confidence 3466789999999999987 88999999886 6667666633 666 8999999999999995 99999999
Q ss_pred e-cCceeEEe---ccCceEEEEEecC
Q 020756 201 H-NGSLFFKK---MFDKLFQAEWKPV 222 (321)
Q Consensus 201 ~-~g~~l~~~---~~~~~~~~~w~P~ 222 (321)
+ .|..+... ....+...-|.|.
T Consensus 91 ve~~~~l~~~~~s~e~~is~~~w~~~ 116 (665)
T KOG4640|consen 91 VEKGGRLVSFLFSVETDISKGIWDRI 116 (665)
T ss_pred ccCCCceeccccccccchheeecccc
Confidence 8 45555432 2235667778654
No 329
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.44 E-value=0.12 Score=50.83 Aligned_cols=113 Identities=15% Similarity=0.219 Sum_probs=68.5
Q ss_pred CCCCCeEEEEECcCC-----CEEEEEEccCCCeEEEEeCC------CceeE----EeC-CcCe--eeEEEcCCCCeEEEE
Q 020756 80 RKEGPVHDVQWSYSG-----SEFAVVYGFMPASATIFNKK------CRPIL----ELG-SGPY--NTVRWNPKGKFLCLA 141 (321)
Q Consensus 80 ~~~~~v~~~~wsP~g-----~~l~~~~g~~~~~i~i~d~~------~~~~~----~~~-~~~~--~~~~~sPdG~~l~~~ 141 (321)
...+.|+.+.|+|-+ ..|||-+ ...+++|.+. .+.+. ++. .-++ ..+.|+|....|++-
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQH---kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VL 130 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQH---KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVL 130 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEec---cceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEE
Confidence 455689999999953 3566643 3589999873 22221 221 1121 236799999888775
Q ss_pred ccCCCCCcEEEEECC--CCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756 142 GFGNLPGDMAFWDYV--DGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 203 (321)
Q Consensus 142 g~~n~~g~i~iwD~~--~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g 203 (321)
.- .|-. -++++. +......+... -|.+.+|.+||+.|+.+..+ -=..+|||-.-
T Consensus 131 T~--~dvS-V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGS-----sLHSyiWd~~q 187 (671)
T PF15390_consen 131 TA--RDVS-VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGS-----SLHSYIWDSAQ 187 (671)
T ss_pred ec--Ccee-EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCC-----eEEEEEecCch
Confidence 41 2222 245544 22333444444 78889999999999988832 22467888643
No 330
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=96.41 E-value=0.0051 Score=55.54 Aligned_cols=110 Identities=11% Similarity=0.191 Sum_probs=73.4
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-c---eeEEe--C-----CcCeeeEEEcCCCCeEEE-EccCCCCC
Q 020756 81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-R---PILEL--G-----SGPYNTVRWNPKGKFLCL-AGFGNLPG 148 (321)
Q Consensus 81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~---~~~~~--~-----~~~~~~~~~sPdG~~l~~-~g~~n~~g 148 (321)
|...|+++.++.|.+.++.+ .+-+|.+|++.- . .+-.+ + ..-+++..|+|.-..++. ++ ..|
T Consensus 171 H~yhiNSiS~NsD~et~lSa---DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs---SkG 244 (460)
T COG5170 171 HPYHINSISFNSDKETLLSA---DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS---SKG 244 (460)
T ss_pred ceeEeeeeeecCchheeeec---cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec---CCC
Confidence 55667888998888777763 355899998742 2 22222 1 234677899997654433 44 679
Q ss_pred cEEEEECCCCeE----EEe------------eeC--CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756 149 DMAFWDYVDGKQ----LGT------------TRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 203 (321)
Q Consensus 149 ~i~iwD~~~~~~----i~~------------~~~--~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g 203 (321)
+|++-|++...+ ... ++. ..+.++.||++||||++-. -.+++|||++-
T Consensus 245 ~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-------yltvkiwDvnm 310 (460)
T COG5170 245 EIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-------YLTVKIWDVNM 310 (460)
T ss_pred cEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-------cceEEEEeccc
Confidence 999999873210 000 111 1566799999999999877 78999999853
No 331
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=96.38 E-value=0.03 Score=50.06 Aligned_cols=71 Identities=21% Similarity=0.325 Sum_probs=51.8
Q ss_pred EEEcCCCCeEEEEccCCCCCcEEEEECCCC--eEEEeeeC-----CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756 129 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQLGTTRA-----ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 201 (321)
Q Consensus 129 ~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~--~~i~~~~~-----~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~ 201 (321)
++-+.||++||.. .|..|+|=..++. .++.+..- +.-..++||||+.+||.+.+ .+.|+++|+
T Consensus 3 ~~~~~~Gk~lAi~----qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S------~G~i~vfdl 72 (282)
T PF15492_consen 3 LALSSDGKLLAIL----QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAES------TGTIRVFDL 72 (282)
T ss_pred eeecCCCcEEEEE----eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcC------CCeEEEEec
Confidence 5667899999997 5678888665432 22232222 13446999999999999997 889999999
Q ss_pred cCceeEEe
Q 020756 202 NGSLFFKK 209 (321)
Q Consensus 202 ~g~~l~~~ 209 (321)
.|..++..
T Consensus 73 ~g~~lf~I 80 (282)
T PF15492_consen 73 MGSELFVI 80 (282)
T ss_pred ccceeEEc
Confidence 98777543
No 332
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=96.37 E-value=0.0041 Score=59.11 Aligned_cols=109 Identities=19% Similarity=0.297 Sum_probs=80.8
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeCC---C------c----eeEEeCCcC-----eeeE-EEcCCCCeEEEEcc
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKK---C------R----PILELGSGP-----YNTV-RWNPKGKFLCLAGF 143 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~---~------~----~~~~~~~~~-----~~~~-~~sPdG~~l~~~g~ 143 (321)
-.|++++++-+|..|.+.| .+-.|+||... + . -+...-.+. |..+ .|-|...|+++++
T Consensus 337 v~ITgl~Ysh~~sElLaSY--nDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS- 413 (559)
T KOG1334|consen 337 VNITGLVYSHDGSELLASY--NDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS- 413 (559)
T ss_pred ccceeEEecCCccceeeee--cccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecC-
Confidence 3578999998888888864 45689999542 2 1 111111122 2233 5789999999998
Q ss_pred CCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756 144 GNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 144 ~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
.-|.|.|||..+++.|..+++. -+.+++=+|---.||+++ .|..|+||.-.
T Consensus 414 --DCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSG------id~DVKIWTP~ 466 (559)
T KOG1334|consen 414 --DCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSG------IDHDVKIWTPL 466 (559)
T ss_pred --ccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccC------CccceeeecCC
Confidence 8899999999999988877764 667788888888898888 59999999873
No 333
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.35 E-value=0.079 Score=47.83 Aligned_cols=112 Identities=15% Similarity=0.175 Sum_probs=80.8
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK 159 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~ 159 (321)
.-+.++.|+|+.+.|+++ .+.+..+.-.+.+++.+.++ +-....++.|.-+|+|+++-- .+..++++.++...
T Consensus 86 ~nvS~LTynp~~rtLFav-~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dE---R~~~l~~~~vd~~t 161 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAV-TNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDE---RDRALYLFTVDADT 161 (316)
T ss_pred ccccceeeCCCcceEEEe-cCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEeh---hcceEEEEEEcCCc
Confidence 348999999999977776 56777777778899998887 344556799999898888876 78888888776542
Q ss_pred EEEee-----eC------C-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc
Q 020756 160 QLGTT-----RA------E-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 204 (321)
Q Consensus 160 ~i~~~-----~~------~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~ 204 (321)
.+..+ .- . .--.++|+|..+.|..+- ..+-+.||.+++.
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK------Er~P~~I~~~~~~ 212 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK------ERNPIGIFEVTQS 212 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEE------ccCCcEEEEEecC
Confidence 21111 11 1 122389999988888888 4677788777543
No 334
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.29 E-value=0.35 Score=44.61 Aligned_cols=146 Identities=17% Similarity=0.185 Sum_probs=84.5
Q ss_pred EEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeC
Q 020756 34 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK 113 (321)
Q Consensus 34 ~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~ 113 (321)
..|.++...|+.+ |- ....++.++...+....+. ..+.+..+..--.+..|+++ ...+.+++.
T Consensus 30 P~w~~~~~~L~w~-----DI------~~~~i~r~~~~~g~~~~~~--~p~~~~~~~~~d~~g~Lv~~----~~g~~~~~~ 92 (307)
T COG3386 30 PVWDPDRGALLWV-----DI------LGGRIHRLDPETGKKRVFP--SPGGFSSGALIDAGGRLIAC----EHGVRLLDP 92 (307)
T ss_pred ccCcCCCCEEEEE-----eC------CCCeEEEecCCcCceEEEE--CCCCcccceeecCCCeEEEE----ccccEEEec
Confidence 3688888877664 11 2334677766543333333 23334444443344445554 224556665
Q ss_pred CCcee-EEe-------CCcCeeeEEEcCCCCeEEEEcc-----C---CCCCcEEEEECCCCeEEEeeeCC--CeeeEEEc
Q 020756 114 KCRPI-LEL-------GSGPYNTVRWNPKGKFLCLAGF-----G---NLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWS 175 (321)
Q Consensus 114 ~~~~~-~~~-------~~~~~~~~~~sPdG~~l~~~g~-----~---n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wS 175 (321)
+.... ..+ .....|.+...|+|++-+.... . ...|.|+.+|. .+..+.....+ ....++||
T Consensus 93 ~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~S 171 (307)
T COG3386 93 DTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFS 171 (307)
T ss_pred cCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEEC
Confidence 42222 322 2345688999999998877543 1 12466777775 45555545443 44569999
Q ss_pred cCCCEEEEEEcCCceeecCcEEEEeec
Q 020756 176 PDGRYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 176 pdG~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
|||+.|..+-+ ..+.++-|++.
T Consensus 172 pDg~tly~aDT-----~~~~i~r~~~d 193 (307)
T COG3386 172 PDGKTLYVADT-----PANRIHRYDLD 193 (307)
T ss_pred CCCCEEEEEeC-----CCCeEEEEecC
Confidence 99999988887 35666666664
No 335
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.29 E-value=0.022 Score=57.76 Aligned_cols=110 Identities=15% Similarity=0.257 Sum_probs=73.9
Q ss_pred ceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 020756 32 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF 111 (321)
Q Consensus 32 ~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~ 111 (321)
.-..|+|....+++..-+ . .. .|...||. ..|.....|+ ..-.+.+++|+|.--.|+. |-.-+.+.+|
T Consensus 19 ti~SWHPsePlfAVA~fS-~-er----~GSVtIfa--dtGEPqr~Vt--~P~hatSLCWHpe~~vLa~--gwe~g~~~v~ 86 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFS-P-ER----GGSVTIFA--DTGEPQRDVT--YPVHATSLCWHPEEFVLAQ--GWEMGVSDVQ 86 (1416)
T ss_pred cccccCCCCceeEEEEec-C-CC----CceEEEEe--cCCCCCcccc--cceehhhhccChHHHHHhh--ccccceeEEE
Confidence 345799998888775321 1 11 14444442 2343333332 2233457999997644444 6667889999
Q ss_pred eCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756 112 NKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 156 (321)
Q Consensus 112 d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~ 156 (321)
.......++. |..++.-+.|||+|..|+++. .-|.|.+|.++
T Consensus 87 ~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d---~~g~v~lwr~d 131 (1416)
T KOG3617|consen 87 KTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLD---NPGSVHLWRYD 131 (1416)
T ss_pred ecCCceeeeeccCCCCCceeEEecCCCCeEEEcC---CCceeEEEEee
Confidence 8866666655 788999999999999999998 77889999765
No 336
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.67 Score=47.47 Aligned_cols=182 Identities=13% Similarity=0.122 Sum_probs=106.8
Q ss_pred EEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEc-CCCceee-------ee
Q 020756 7 VQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT-DGTHEGL-------VP 78 (321)
Q Consensus 7 v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~-~g~~~~~-------v~ 78 (321)
.+||.+++- -+.+.-...++.+.+++.|.-+++.+++.... |..|... ...+|.++- ++....+ ++
T Consensus 45 G~V~~Ln~s--~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~E--d~~~np~--llkiw~lek~~~n~sP~c~~~~ri~~ 118 (933)
T KOG2114|consen 45 GRVVILNSS--FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGE--DEQGNPV--LLKIWDLEKVDKNNSPQCLYEHRIFT 118 (933)
T ss_pred ccEEEeccc--ceeeehheecchhhhhHhhcccCceEEEEEee--cCCCCce--EEEEecccccCCCCCcceeeeeeeec
Confidence 345555551 22334444555566788899999887776543 2332220 112343332 2332111 11
Q ss_pred c--C-CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-----Cc-eeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCC
Q 020756 79 L--R-KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-----CR-PILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPG 148 (321)
Q Consensus 79 l--~-~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-----~~-~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g 148 (321)
+ . ...|+..++.|-+-+.+|+ |+.+|.|.++.-+ +- ..... +..++..+.+.-+|+.+++.. ...
T Consensus 119 ~~np~~~~p~s~l~Vs~~l~~Iv~--Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~---Tt~ 193 (933)
T KOG2114|consen 119 IKNPTNPSPASSLAVSEDLKTIVC--GFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVA---TTE 193 (933)
T ss_pred cCCCCCCCcceEEEEEccccEEEE--EecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEE---ecc
Confidence 1 1 2567888999988554444 8889999988431 11 11112 678999999999999866655 446
Q ss_pred cEEEEECCCCe-EEEeeeCCCe--eeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee
Q 020756 149 DMAFWDYVDGK-QLGTTRAECS--VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF 206 (321)
Q Consensus 149 ~i~iwD~~~~~-~i~~~~~~~~--~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l 206 (321)
.|.+|.+.... ....+..+.+ .+..+++...-|++++ ++.+.+|+.+|+-.
T Consensus 194 ~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-------~e~l~fY~sd~~~~ 247 (933)
T KOG2114|consen 194 QVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-------SEFLYFYDSDGRGP 247 (933)
T ss_pred eeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-------CceEEEEcCCCcce
Confidence 89999987443 2444555543 3344444333377777 68899999877543
No 337
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.24 E-value=0.016 Score=33.53 Aligned_cols=30 Identities=37% Similarity=0.840 Sum_probs=26.8
Q ss_pred CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEE
Q 020756 122 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWD 154 (321)
Q Consensus 122 ~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD 154 (321)
+...+.++.|+|+++++++++ .++.+.+||
T Consensus 11 ~~~~i~~~~~~~~~~~~~~~~---~d~~~~~~~ 40 (40)
T smart00320 11 HTGPVTSVAFSPDGKYLASAS---DDGTIKLWD 40 (40)
T ss_pred cCCceeEEEECCCCCEEEEec---CCCeEEEcC
Confidence 567889999999999999998 889999996
No 338
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.19 E-value=0.11 Score=53.60 Aligned_cols=126 Identities=10% Similarity=0.199 Sum_probs=78.9
Q ss_pred eEEEEEcCCCce-eeeecCCCCCeEEEEECc-----CCCEEEEEEccCCCeEEEEeCCCc---eeEE----e-CCcCeee
Q 020756 63 KLNYLTTDGTHE-GLVPLRKEGPVHDVQWSY-----SGSEFAVVYGFMPASATIFNKKCR---PILE----L-GSGPYNT 128 (321)
Q Consensus 63 ~l~~l~~~g~~~-~~v~l~~~~~v~~~~wsP-----~g~~l~~~~g~~~~~i~i~d~~~~---~~~~----~-~~~~~~~ 128 (321)
.||.|++..+.. ....+....+|.+++=+- +...-++ |..+..+..||.+.. .+.. + ......|
T Consensus 505 ~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tfl--Gls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~ 582 (794)
T PF08553_consen 505 KLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFL--GLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSC 582 (794)
T ss_pred ceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEE--EECCCceEEeccCCCCCceeeccccccccCCCceE
Confidence 488888876532 223344455566554431 1111122 344568889998532 2211 1 2344566
Q ss_pred EEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeC--CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756 129 VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 201 (321)
Q Consensus 129 ~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~--~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~ 201 (321)
++=+-+| +||+++ .+|.|++||....+..+.+.+ ..|+.++.+.||+||+..+ +..+.|++.
T Consensus 583 ~aTt~~G-~iavgs---~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-------~tyLlLi~t 646 (794)
T PF08553_consen 583 FATTEDG-YIAVGS---NKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-------KTYLLLIDT 646 (794)
T ss_pred EEecCCc-eEEEEe---CCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-------cceEEEEEE
Confidence 7666666 667777 899999999643333344444 3899999999999999888 788888875
No 339
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=96.17 E-value=0.021 Score=57.07 Aligned_cols=156 Identities=12% Similarity=0.211 Sum_probs=94.7
Q ss_pred CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC-ceeeeecCCCCCeEEEEECcCCC-EEEEEEccCCC
Q 020756 29 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPLRKEGPVHDVQWSYSGS-EFAVVYGFMPA 106 (321)
Q Consensus 29 ~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-~~~~v~l~~~~~v~~~~wsP~g~-~l~~~~g~~~~ 106 (321)
=.+.+..||+.-..=.-++++.. .+. -+|++..... ....+.-.|...|.++.|+|... .++++ ..+.
T Consensus 68 w~vad~qws~h~a~~~wiVsts~---qka-----iiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatc--svdt 137 (1081)
T KOG0309|consen 68 WQVADVQWSPHPAKPYWIVSTSN---QKA-----IIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATC--SVDT 137 (1081)
T ss_pred chhcceecccCCCCceeEEecCc---chh-----hhhhhhcCCccceEEEEecCccceeccccCCCCCcceeec--cccc
Confidence 34667789886553333333211 111 1333332221 12223335788999999999765 56665 4567
Q ss_pred eEEEEeCCCc--eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC-eEEEeeeCC--CeeeEEEccC-C
Q 020756 107 SATIFNKKCR--PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG-KQLGTTRAE--CSVTSEWSPD-G 178 (321)
Q Consensus 107 ~i~i~d~~~~--~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~-~~i~~~~~~--~~~~~~wSpd-G 178 (321)
.+..||++.- ++..+ -......+.|+--.-.++..+ ....|.+||++.+ ..+.+++.+ .+..++|..- -
T Consensus 138 ~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass---hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~ 214 (1081)
T KOG0309|consen 138 YVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS---HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY 214 (1081)
T ss_pred cceeeeccCCCcceeeeecccccCceeeecccCcchhhhc---cCCceEEEeccCCCcceEEecccceeeehHHHhhhhh
Confidence 8999999653 44444 355677899997554555555 3458999999876 567777775 3445566442 2
Q ss_pred CEEEEEEcCCceeecCcEEEEeecC
Q 020756 179 RYFMTATTAPRLQIDNGIKIFHHNG 203 (321)
Q Consensus 179 ~~l~t~~s~~rl~~d~~v~iw~~~g 203 (321)
..++++. .|++|+.|+++.
T Consensus 215 s~~~s~~------~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 215 SEIMSSS------NDGTVKFWDYSK 233 (1081)
T ss_pred hhhcccC------CCCceeeecccc
Confidence 3345555 399999999953
No 340
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.14 E-value=0.2 Score=46.22 Aligned_cols=118 Identities=14% Similarity=0.178 Sum_probs=70.6
Q ss_pred eEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC---c---e--eEEe--CCcCeeeEEEc
Q 020756 63 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC---R---P--ILEL--GSGPYNTVRWN 132 (321)
Q Consensus 63 ~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~---~---~--~~~~--~~~~~~~~~~s 132 (321)
.||.++..+...+.+ .++-..-+.++||||++.|.++ ....+.+.-|++.. . . ...+ +.+.--.++.-
T Consensus 144 ~lyr~~p~g~~~~l~-~~~~~~~NGla~SpDg~tly~a-DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD 221 (307)
T COG3386 144 SLYRVDPDGGVVRLL-DDDLTIPNGLAFSPDGKTLYVA-DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD 221 (307)
T ss_pred eEEEEcCCCCEEEee-cCcEEecCceEECCCCCEEEEE-eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEe
Confidence 489888655533333 2334455789999999988887 34456888887642 1 1 1111 12222233444
Q ss_pred CCCCeEEEEccCCCC-CcEEEEECCCCeEEEeeeCC--CeeeEEE-ccCCCEEEEEEc
Q 020756 133 PKGKFLCLAGFGNLP-GDMAFWDYVDGKQLGTTRAE--CSVTSEW-SPDGRYFMTATT 186 (321)
Q Consensus 133 PdG~~l~~~g~~n~~-g~i~iwD~~~~~~i~~~~~~--~~~~~~w-SpdG~~l~t~~s 186 (321)
-+|.+-+.+. .+ +.|.+|+.+ ++++..+.-+ .+++++| .|+.+.|...+.
T Consensus 222 adG~lw~~a~---~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 222 ADGNLWVAAV---WGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCCEEEecc---cCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 4566554333 23 389999997 8888877765 5667777 556666555553
No 341
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.11 E-value=0.29 Score=43.82 Aligned_cols=138 Identities=16% Similarity=0.125 Sum_probs=84.9
Q ss_pred CeEEEEECcCCCEEEEEEc-cCCCeEEEEeCCCceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEE-ECCCCe--
Q 020756 84 PVHDVQWSYSGSEFAVVYG-FMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW-DYVDGK-- 159 (321)
Q Consensus 84 ~v~~~~wsP~g~~l~~~~g-~~~~~i~i~d~~~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw-D~~~~~-- 159 (321)
.+.++++|++|+.++++.. .....+.++...+.....+.........|+++|...++.. .+....++ +..++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~---~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDD---GSGGVRVVRDSASGTGE 101 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEc---CCCceEEEEecCCCcce
Confidence 6889999999999988751 2223666666554444433344778899999988777765 33444444 333332
Q ss_pred E--EEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee----cC-c-ee---EEe---ccCceEEEEEecCCC
Q 020756 160 Q--LGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH----NG-S-LF---FKK---MFDKLFQAEWKPVSP 224 (321)
Q Consensus 160 ~--i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~----~g-~-~l---~~~---~~~~~~~~~w~P~~~ 224 (321)
. +...... .|+.+.+||||..+|...... .+..+.|--+ .| . .+ ... ....+.++.|.++..
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~---~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDG---GGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDST 178 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecC---CCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCE
Confidence 1 1111112 688999999999999887310 1344555444 34 1 11 111 234788999999876
Q ss_pred CCC
Q 020756 225 DKF 227 (321)
Q Consensus 225 ~~~ 227 (321)
.++
T Consensus 179 L~V 181 (253)
T PF10647_consen 179 LVV 181 (253)
T ss_pred EEE
Confidence 544
No 342
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.11 E-value=1.4 Score=42.38 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=40.5
Q ss_pred cCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC---CeeeEEEccCCCE
Q 020756 124 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE---CSVTSEWSPDGRY 180 (321)
Q Consensus 124 ~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~---~~~~~~wSpdG~~ 180 (321)
+++..++.||+|++||+-. .+|.+.+...+-.+.+..+... ...++.|+-+..-
T Consensus 217 ~~i~~iavSpng~~iAl~t---~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav 273 (410)
T PF04841_consen 217 GPIIKIAVSPNGKFIALFT---DSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAV 273 (410)
T ss_pred CCeEEEEECCCCCEEEEEE---CCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcE
Confidence 5788999999999999987 7799999876544555554433 5667888877543
No 343
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.11 E-value=0.29 Score=46.30 Aligned_cols=151 Identities=15% Similarity=0.165 Sum_probs=80.7
Q ss_pred ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEc---CCCcee-eeecCCCCCeEEEEECcCCCEEEEEEccCC
Q 020756 30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT---DGTHEG-LVPLRKEGPVHDVQWSYSGSEFAVVYGFMP 105 (321)
Q Consensus 30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~---~g~~~~-~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~ 105 (321)
....|.|.++|+.+++-..+-....+........|+.+.. +|..++ .+-.+.....+.+.+.++| +.++ ..+
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV~--~~~ 90 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG--VYVA--TPP 90 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC--EEEe--CCC
Confidence 5678999999996654321100000000001124666654 333222 2222334456889999999 4443 333
Q ss_pred CeEEEE-eCCCc--------eeE-EeC------CcCeeeEEEcCCCCeEEEEccC-C---------------CCCcEEEE
Q 020756 106 ASATIF-NKKCR--------PIL-ELG------SGPYNTVRWNPKGKFLCLAGFG-N---------------LPGDMAFW 153 (321)
Q Consensus 106 ~~i~i~-d~~~~--------~~~-~~~------~~~~~~~~~sPdG~~l~~~g~~-n---------------~~g~i~iw 153 (321)
.|..| |..+. .+. .++ ....+.+.|.|||.+.+..+.. + ..|.|.-+
T Consensus 91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 45544 54321 121 232 2336789999999877765521 1 12567777
Q ss_pred ECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEE
Q 020756 154 DYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTAT 185 (321)
Q Consensus 154 D~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~ 185 (321)
|.+.++........ +...++|+|+|+++++-.
T Consensus 170 ~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 170 NPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence 77655432222222 567799999999876644
No 344
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.016 Score=54.02 Aligned_cols=73 Identities=15% Similarity=0.179 Sum_probs=61.9
Q ss_pred CCcCeeeEEEcCCCC-eEEEEccCCCCCcEEEEECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEE
Q 020756 122 GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 199 (321)
Q Consensus 122 ~~~~~~~~~~sPdG~-~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw 199 (321)
+...+..++|||+.+ +|.+++ .+..|.|.|+.+...+..+..+ .+.+++|.-|.++++.++. ..+.|.||
T Consensus 192 ~g~~IrdlafSp~~~GLl~~as---l~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl-----~nG~Vlvy 263 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLAS---LGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGL-----QNGMVLVY 263 (463)
T ss_pred cchhhhhhccCccccceeeeec---cCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEec-----cCceEEEE
Confidence 345678899999988 677777 7779999999999888888776 7889999999999999986 47789999
Q ss_pred eec
Q 020756 200 HHN 202 (321)
Q Consensus 200 ~~~ 202 (321)
|..
T Consensus 264 D~R 266 (463)
T KOG1645|consen 264 DMR 266 (463)
T ss_pred Ecc
Confidence 983
No 345
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.089 Score=49.91 Aligned_cols=120 Identities=20% Similarity=0.302 Sum_probs=81.4
Q ss_pred EEEccCCCeEEEEeCCCc--ee---EEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC-C-----eE-------
Q 020756 99 VVYGFMPASATIFNKKCR--PI---LELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD-G-----KQ------- 160 (321)
Q Consensus 99 ~~~g~~~~~i~i~d~~~~--~~---~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~-~-----~~------- 160 (321)
.+.....+.+.++|..+. +. ..+|..++..+.++|-|..+++.. ..|-|+-|.... . +.
T Consensus 115 AVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD---~~gmVEyWs~e~~~qfPr~~l~~~~K~e 191 (558)
T KOG0882|consen 115 AVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID---ISGMVEYWSAEGPFQFPRTNLNFELKHE 191 (558)
T ss_pred EeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc---ccceeEeecCCCcccCcccccccccccc
Confidence 334566778999998543 22 234899999999999999999987 678999998762 1 11
Q ss_pred ---EEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEeccCceEEEEEecCCCCCC
Q 020756 161 ---LGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEWKPVSPDKF 227 (321)
Q Consensus 161 ---i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~~~~~~~~w~P~~~~~~ 227 (321)
....+.. ..++++|||+|..|.+-.. |..|+++.+.++.+...-.....+....|..++-+
T Consensus 192 TdLy~f~K~Kt~pts~Efsp~g~qistl~~------DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l 256 (558)
T KOG0882|consen 192 TDLYGFPKAKTEPTSFEFSPDGAQISTLNP------DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGL 256 (558)
T ss_pred chhhcccccccCccceEEccccCcccccCc------ccEEEEEEeccchhhhhhhccchhhhhcccccccc
Confidence 0111111 5677999999999998873 99999999966554333333344445555554433
No 346
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.04 E-value=0.081 Score=51.96 Aligned_cols=97 Identities=18% Similarity=0.293 Sum_probs=62.8
Q ss_pred ceEEEEEcCCcC--CCCce-eeee----cccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeee
Q 020756 5 ASVQIYACGKDL--QSQPL-ARRS----FFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLV 77 (321)
Q Consensus 5 ~~v~v~~~~~~~--~~~~i-~~~~----~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v 77 (321)
-.|.||.+.--. .++.+ .|-. -|..=.-...|+|....|.+++..|+ + -++.+..+.. ....
T Consensus 82 khVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dv-----S-----V~~sV~~d~s-rVka 150 (671)
T PF15390_consen 82 KHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDV-----S-----VLPSVHCDSS-RVKA 150 (671)
T ss_pred ceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCce-----e-----EeeeeeeCCc-eEEE
Confidence 368999997411 11211 1111 12223335689999999999976542 1 2455655554 3445
Q ss_pred ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeC
Q 020756 78 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK 113 (321)
Q Consensus 78 ~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~ 113 (321)
.+...|-||+.+|.+||++|+++.|. .=..+|||-
T Consensus 151 Di~~~G~IhCACWT~DG~RLVVAvGS-sLHSyiWd~ 185 (671)
T PF15390_consen 151 DIKTSGLIHCACWTKDGQRLVVAVGS-SLHSYIWDS 185 (671)
T ss_pred eccCCceEEEEEecCcCCEEEEEeCC-eEEEEEecC
Confidence 56678999999999999999998775 235678876
No 347
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=95.94 E-value=1.6 Score=42.08 Aligned_cols=79 Identities=8% Similarity=0.101 Sum_probs=49.4
Q ss_pred eEEeCCCCCeeEEEEEecccCCCceeecce-eEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 020756 33 QLNWNRGSTGLLAVAQSDVDKTNQSYYGES-KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF 111 (321)
Q Consensus 33 ~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~-~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~ 111 (321)
.+.-+|.|..|+++... .+......... .|...+..|.....+..++ +.|.++.|+.+-+.+++ ..+|.+.+|
T Consensus 33 ~va~a~~gGpIAi~~d~--~k~~~~~~~~p~~I~iys~sG~ll~~i~w~~-~~iv~~~wt~~e~LvvV---~~dG~v~vy 106 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDE--SKLVPVGSAKPNSIQIYSSSGKLLSSIPWDS-GRIVGMGWTDDEELVVV---QSDGTVRVY 106 (410)
T ss_pred eEEEcCCCceEEEEecC--cccccccCCCCcEEEEECCCCCEeEEEEECC-CCEEEEEECCCCeEEEE---EcCCEEEEE
Confidence 34556667777665221 01111001111 3677777887777777777 89999999986555544 458899999
Q ss_pred eCCCce
Q 020756 112 NKKCRP 117 (321)
Q Consensus 112 d~~~~~ 117 (321)
|+.++.
T Consensus 107 ~~~G~~ 112 (410)
T PF04841_consen 107 DLFGEF 112 (410)
T ss_pred eCCCce
Confidence 996655
No 348
>PRK10115 protease 2; Provisional
Probab=95.91 E-value=0.25 Score=50.79 Aligned_cols=114 Identities=8% Similarity=-0.004 Sum_probs=69.4
Q ss_pred CeEEEEECcCCCEEEEEEc---cCCCeEEEEeCCCce-eEEeCCcCeeeEEEcCCCCeEEEEccC-C--CCCcEEEEECC
Q 020756 84 PVHDVQWSYSGSEFAVVYG---FMPASATIFNKKCRP-ILELGSGPYNTVRWNPKGKFLCLAGFG-N--LPGDMAFWDYV 156 (321)
Q Consensus 84 ~v~~~~wsP~g~~l~~~~g---~~~~~i~i~d~~~~~-~~~~~~~~~~~~~~sPdG~~l~~~g~~-n--~~g~i~iwD~~ 156 (321)
.+..+.|||||++|++... ++...+.+.|+.+.. +.+.-......+.|++||+.|+.+... + ....|+++++.
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lg 207 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIG 207 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECC
Confidence 4678999999999988642 222367788885443 222111122569999999988887642 1 23579999998
Q ss_pred CC--e--EEEeeeCCCeeeEEEcc-CCCEEEEEEcCCceeecCcEEEEe
Q 020756 157 DG--K--QLGTTRAECSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIFH 200 (321)
Q Consensus 157 ~~--~--~i~~~~~~~~~~~~wSp-dG~~l~t~~s~~rl~~d~~v~iw~ 200 (321)
++ + ++............|.+ |+++++..+... .++.+.+++
T Consensus 208 t~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~---~~~~~~l~~ 253 (686)
T PRK10115 208 TPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASA---TTSEVLLLD 253 (686)
T ss_pred CChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECC---ccccEEEEE
Confidence 77 3 33332222233234544 999887655421 245566666
No 349
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=95.78 E-value=0.036 Score=31.86 Aligned_cols=27 Identities=33% Similarity=0.695 Sum_probs=23.9
Q ss_pred CeeeEEEccCCCEEEEEEcCCceeecCcEEEEe
Q 020756 168 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 200 (321)
Q Consensus 168 ~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~ 200 (321)
.+..+.|++++.++++++. |+.+++|+
T Consensus 14 ~i~~~~~~~~~~~~~~~~~------d~~~~~~~ 40 (40)
T smart00320 14 PVTSVAFSPDGKYLASASD------DGTIKLWD 40 (40)
T ss_pred ceeEEEECCCCCEEEEecC------CCeEEEcC
Confidence 6888999999999998884 89999996
No 350
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.66 E-value=0.15 Score=51.25 Aligned_cols=101 Identities=18% Similarity=0.333 Sum_probs=65.6
Q ss_pred EEECcCCCEEEEEEccCCCeEEEEeCCCcee---EEe-CCcCeeeEEEc--CCCCeEEEEccCCCCCcEEEEEC-----C
Q 020756 88 VQWSYSGSEFAVVYGFMPASATIFNKKCRPI---LEL-GSGPYNTVRWN--PKGKFLCLAGFGNLPGDMAFWDY-----V 156 (321)
Q Consensus 88 ~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~---~~~-~~~~~~~~~~s--PdG~~l~~~g~~n~~g~i~iwD~-----~ 156 (321)
+.-|. -+.+|++. .....++|||.+.... ..| ....|.++.|. |||+.|+..||+ ..|.+|-- .
T Consensus 35 i~gss-~~k~a~V~-~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~---~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 35 ISGSS-IKKIAVVD-SSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFP---HHVLLYTQLRYDYT 109 (631)
T ss_pred Eeecc-cCcEEEEE-CCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcC---cEEEEEEccchhhh
Confidence 33344 33566663 3345999999965432 223 46788999887 799999999954 47777632 2
Q ss_pred CC----eE-----EEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756 157 DG----KQ-----LGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 201 (321)
Q Consensus 157 ~~----~~-----i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~ 201 (321)
+. .. +..++.|.+.+..|.+||.+++.+ +|.+.|++-
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--------GNqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--------GNQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--------CCEEEEECC
Confidence 11 12 333455688899999999966554 467777764
No 351
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=95.64 E-value=0.023 Score=50.19 Aligned_cols=76 Identities=13% Similarity=0.211 Sum_probs=60.5
Q ss_pred cCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE-EEeeeCC--CeeeEEEcc-CCCEEEEEEcCCceeecCcEEEE
Q 020756 124 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ-LGTTRAE--CSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIF 199 (321)
Q Consensus 124 ~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~-i~~~~~~--~~~~~~wSp-dG~~l~t~~s~~rl~~d~~v~iw 199 (321)
..+.+++-+|..+.++.+|. .+|.+-+||.++... +..+..| .+..+-|+| ++.+|.+++ .|+.+.-|
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt--~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~s------edGslw~w 251 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGT--DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCS------EDGSLWHW 251 (319)
T ss_pred ccchhhhCCcccccEEEEec--CCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEec------CCCcEEEE
Confidence 34888999998888888772 679999999988743 3334444 788899999 699999999 59999999
Q ss_pred eecCceeE
Q 020756 200 HHNGSLFF 207 (321)
Q Consensus 200 ~~~g~~l~ 207 (321)
|-++..+.
T Consensus 252 das~~~l~ 259 (319)
T KOG4714|consen 252 DASTTFLS 259 (319)
T ss_pred cCCCceEE
Confidence 99887664
No 352
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.092 Score=49.14 Aligned_cols=76 Identities=11% Similarity=0.163 Sum_probs=58.3
Q ss_pred CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCcee-EEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756 80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 157 (321)
Q Consensus 80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~-~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~ 157 (321)
.+...|.+++|||..+-|+.. +..+.+|.|+|+....+ ..+ -...+.+++|.-|.+..+.+|. .+|.|+|||++.
T Consensus 191 ~~g~~IrdlafSp~~~GLl~~-asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl--~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 191 GEGSFIRDLAFSPFNEGLLGL-ASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGL--QNGMVLVYDMRQ 267 (463)
T ss_pred ccchhhhhhccCccccceeee-eccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEec--cCceEEEEEccC
Confidence 456689999999988844443 45677999999976533 333 3478889999999998888884 459999999985
Q ss_pred C
Q 020756 158 G 158 (321)
Q Consensus 158 ~ 158 (321)
-
T Consensus 268 ~ 268 (463)
T KOG1645|consen 268 P 268 (463)
T ss_pred C
Confidence 4
No 353
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.54 E-value=1.3 Score=38.36 Aligned_cols=140 Identities=13% Similarity=0.066 Sum_probs=80.0
Q ss_pred CceEEEEEcCCcCCCCceeeeecccCccceEE--eCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC
Q 020756 4 PASVQIYACGKDLQSQPLARRSFFRCSTVQLN--WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK 81 (321)
Q Consensus 4 p~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~--Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~ 81 (321)
-+.|..|+..+ ++.+.+..+.+ ...... -.+++..+++.. +...|+.++...+ ........
T Consensus 2 ~g~l~~~d~~t---G~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~------------~~~~l~~~d~~tG-~~~W~~~~ 64 (238)
T PF13360_consen 2 DGTLSALDPRT---GKELWSYDLGP-GIGGPVATAVPDGGRVYVAS------------GDGNLYALDAKTG-KVLWRFDL 64 (238)
T ss_dssp TSEEEEEETTT---TEEEEEEECSS-SCSSEEETEEEETTEEEEEE------------TTSEEEEEETTTS-EEEEEEEC
T ss_pred CCEEEEEECCC---CCEEEEEECCC-CCCCccceEEEeCCEEEEEc------------CCCEEEEEECCCC-CEEEEeec
Confidence 36889999988 88888887733 222222 223555655541 4446888887433 22222222
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeC-CCceeEEe--CC---c-CeeeEEEcCCCCeEEEEccCCCCCcEEEEE
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL--GS---G-PYNTVRWNPKGKFLCLAGFGNLPGDMAFWD 154 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~~~~--~~---~-~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD 154 (321)
.+++.... ..++..+++. ..++.+..+|. .++.+..+ .. . .........+|..++++. ..+.|..+|
T Consensus 65 ~~~~~~~~-~~~~~~v~v~--~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~l~~~d 138 (238)
T PF13360_consen 65 PGPISGAP-VVDGGRVYVG--TSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGT---SSGKLVALD 138 (238)
T ss_dssp SSCGGSGE-EEETTEEEEE--ETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEE---TCSEEEEEE
T ss_pred ccccccee-eecccccccc--cceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEe---ccCcEEEEe
Confidence 33332222 2345555554 34568999996 55555553 11 1 122233333478787776 679999999
Q ss_pred CCCCeEEEeeeC
Q 020756 155 YVDGKQLGTTRA 166 (321)
Q Consensus 155 ~~~~~~i~~~~~ 166 (321)
+++|+.+-....
T Consensus 139 ~~tG~~~w~~~~ 150 (238)
T PF13360_consen 139 PKTGKLLWKYPV 150 (238)
T ss_dssp TTTTEEEEEEES
T ss_pred cCCCcEEEEeec
Confidence 999988766654
No 354
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.41 E-value=0.044 Score=35.60 Aligned_cols=34 Identities=12% Similarity=0.371 Sum_probs=29.5
Q ss_pred CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeE
Q 020756 123 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQ 160 (321)
Q Consensus 123 ~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~ 160 (321)
...+..+.|+|...+|+++. .+|.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t---~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGT---EDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEE---CCCeEEEEEC-CCcC
Confidence 45688999999999999998 8999999998 5544
No 355
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=95.39 E-value=0.63 Score=43.23 Aligned_cols=128 Identities=17% Similarity=0.177 Sum_probs=79.7
Q ss_pred eEEEEEcCCC-ceeeeecCCCCCeEEEEECcCCCEEEEEEc--------cCCCeEEEEeCCCc-eeEEe--CC-------
Q 020756 63 KLNYLTTDGT-HEGLVPLRKEGPVHDVQWSYSGSEFAVVYG--------FMPASATIFNKKCR-PILEL--GS------- 123 (321)
Q Consensus 63 ~l~~l~~~g~-~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g--------~~~~~i~i~d~~~~-~~~~~--~~------- 123 (321)
.+|+++.+.. ...+++ .+-...+..||||+.+.++.. ...--|.+||..+- +..++ ..
T Consensus 18 rv~viD~d~~k~lGmi~---~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 18 RVYVIDADSGKLLGMID---TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEETTTTEEEEEEE---EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred eEEEEECCCCcEEEEee---cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 5677775443 222333 234455788999999987532 22236889998653 44433 22
Q ss_pred cCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756 124 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 201 (321)
Q Consensus 124 ~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~ 201 (321)
...+.+..|.||+++++..|. -...|.|.|+..++.+..+.-+.+..+-=+...+|.+.|. |+.+.-..+
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~T-Pa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~-------DGsl~~v~L 164 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFT-PATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCG-------DGSLLTVTL 164 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEES-SSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEET-------TSCEEEEEE
T ss_pred ccccceEEccCCcEEEEEccC-CCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEec-------CCceEEEEE
Confidence 233568999999999998643 2468999999999999988887544443333334554444 777766666
No 356
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=95.36 E-value=0.28 Score=50.44 Aligned_cols=63 Identities=13% Similarity=0.240 Sum_probs=46.3
Q ss_pred CCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcCeeeEEEcCCCCeEEEEccC------CCCCcEEEEECCCCe
Q 020756 93 SGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGPYNTVRWNPKGKFLCLAGFG------NLPGDMAFWDYVDGK 159 (321)
Q Consensus 93 ~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~------n~~g~i~iwD~~~~~ 159 (321)
+++.|++ |...|+|.+-|.+ .+.+++| |.+.+.. |.=+|+.|+++|+. +.|.-|.|||++..+
T Consensus 186 Nnr~lf~--G~t~G~V~LrD~~s~~~iht~~aHs~siSD--fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmr 257 (1118)
T KOG1275|consen 186 NNRNLFC--GDTRGTVFLRDPNSFETIHTFDAHSGSISD--FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMR 257 (1118)
T ss_pred cCcEEEe--ecccceEEeecCCcCceeeeeeccccceee--eeccCCeEEEeecccccccccccchhhhhhhhhhh
Confidence 4555555 6777899999985 5677787 5665555 45569999999973 257889999998643
No 357
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.01 E-value=0.18 Score=50.31 Aligned_cols=99 Identities=12% Similarity=0.170 Sum_probs=72.3
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe----CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 158 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~----~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~ 158 (321)
..|.=-+++-.++++++ |...|.+++|+..++.+..+ ..+....+..|++..++|+++ ..|.|.++-++..
T Consensus 34 ~~v~lTc~dst~~~l~~--GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt---~~g~V~v~ql~~~ 108 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAM--GSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGT---ASGRVSVFQLNKE 108 (726)
T ss_pred ceEEEEEeecCCceEEE--ecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhc---CCceEEeehhhcc
Confidence 34445566777888888 56678999999877655444 345566788999998888888 7789999987753
Q ss_pred ---e--EEEeeeC-C--CeeeEEEccCCCEEEEEEc
Q 020756 159 ---K--QLGTTRA-E--CSVTSEWSPDGRYFMTATT 186 (321)
Q Consensus 159 ---~--~i~~~~~-~--~~~~~~wSpdG~~l~t~~s 186 (321)
. .+..... | .|++++||+||..+.+|-+
T Consensus 109 ~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~ 144 (726)
T KOG3621|consen 109 LPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDS 144 (726)
T ss_pred CCCcceeeccccccCCceEEEEEecccccEEeecCC
Confidence 1 2222222 2 6889999999999998885
No 358
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.99 E-value=0.15 Score=49.54 Aligned_cols=121 Identities=12% Similarity=0.210 Sum_probs=78.9
Q ss_pred eeeec-CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeC-CCceeEEe----CCcCeeeEEEcCC-CCeEEEEccCCCC
Q 020756 75 GLVPL-RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNK-KCRPILEL----GSGPYNTVRWNPK-GKFLCLAGFGNLP 147 (321)
Q Consensus 75 ~~v~l-~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~-~~~~~~~~----~~~~~~~~~~sPd-G~~l~~~g~~n~~ 147 (321)
++.+. .|+.+|+++.|--+-++++.+ |+.+.+||- .+.++... ..+....+.--|+ .+.|+.+|- ...
T Consensus 776 CQfTY~aHkk~i~~igfL~~lr~i~Sc----D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgc-sae 850 (1034)
T KOG4190|consen 776 CQFTYQAHKKPIHDIGFLADLRSIASC----DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGC-SAE 850 (1034)
T ss_pred eeeEhhhccCcccceeeeeccceeeec----cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeec-cch
Confidence 44443 378999999999999988876 567999996 44443322 1222233333343 454544431 156
Q ss_pred CcEEEEECCCCeEEEeee-----CC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec-Ccee
Q 020756 148 GDMAFWDYVDGKQLGTTR-----AE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN-GSLF 206 (321)
Q Consensus 148 g~i~iwD~~~~~~i~~~~-----~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~-g~~l 206 (321)
.+|+++|.+.++-+..+. .+ .+.+++..+.|.+++.+-+ .+++.+.|.. |..+
T Consensus 851 STVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LS------nGci~~LDaR~G~vI 911 (1034)
T KOG4190|consen 851 STVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALS------NGCIAILDARNGKVI 911 (1034)
T ss_pred hhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhc------CCcEEEEecCCCcee
Confidence 899999998775433322 22 3456899999999999986 7888888874 4433
No 359
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.91 E-value=0.07 Score=34.65 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=29.4
Q ss_pred CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee
Q 020756 168 CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF 206 (321)
Q Consensus 168 ~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l 206 (321)
.+..++|||+..+||.++. ++.|.||.++++.+
T Consensus 13 ~v~~~~w~P~mdLiA~~t~------~g~v~v~Rl~~qri 45 (47)
T PF12894_consen 13 RVSCMSWCPTMDLIALGTE------DGEVLVYRLNWQRI 45 (47)
T ss_pred cEEEEEECCCCCEEEEEEC------CCeEEEEECCCcCc
Confidence 5778999999999999994 99999999988765
No 360
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.85 E-value=0.2 Score=48.84 Aligned_cols=182 Identities=12% Similarity=0.163 Sum_probs=108.7
Q ss_pred CCceEEEEEcCCcC--CCCceeeeec--ccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCce-eee
Q 020756 3 SPASVQIYACGKDL--QSQPLARRSF--FRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHE-GLV 77 (321)
Q Consensus 3 ~p~~v~v~~~~~~~--~~~~i~~~~~--f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~-~~v 77 (321)
.+-.|++|++..-. .+...+|.++ ++....++.+-.+-++++.+ ...+++|+.+.+.. .++
T Consensus 755 kDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--------------D~giHlWDPFigr~Laq~ 820 (1034)
T KOG4190|consen 755 KDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--------------DGGIHLWDPFIGRLLAQM 820 (1034)
T ss_pred CCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--------------cCcceeecccccchhHhh
Confidence 35678999997621 1223344443 34455566666666666543 11267776654321 111
Q ss_pred -ecCCCCCeEEEEECcC-CCEEEEEEccCCCeEEEEeCCCcee-EEe-------CCcCeeeEEEcCCCCeEEEEccCCCC
Q 020756 78 -PLRKEGPVHDVQWSYS-GSEFAVVYGFMPASATIFNKKCRPI-LEL-------GSGPYNTVRWNPKGKFLCLAGFGNLP 147 (321)
Q Consensus 78 -~l~~~~~v~~~~wsP~-g~~l~~~~g~~~~~i~i~d~~~~~~-~~~-------~~~~~~~~~~sPdG~~l~~~g~~n~~ 147 (321)
.-.+++.+..+.--|+ .+.++++.-....++++||.+...+ .++ .++-+.+++..|.|+.++.+- ..
T Consensus 821 ~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~L---Sn 897 (1034)
T KOG4190|consen 821 EDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAAL---SN 897 (1034)
T ss_pred hcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHh---cC
Confidence 2235666666666665 4444443113455899999863322 111 345678899999999999876 67
Q ss_pred CcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEE-Eee-cCceeEE
Q 020756 148 GDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKI-FHH-NGSLFFK 208 (321)
Q Consensus 148 g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~i-w~~-~g~~l~~ 208 (321)
|.|-+.|.++|+.+.....- ...++ -.|..++|+.... |..+-+ |+. +|...++
T Consensus 898 Gci~~LDaR~G~vINswrpmecdllql-aapsdq~L~~sal------dHslaVnWhaldgimh~q 955 (1034)
T KOG4190|consen 898 GCIAILDARNGKVINSWRPMECDLLQL-AAPSDQALAQSAL------DHSLAVNWHALDGIMHLQ 955 (1034)
T ss_pred CcEEEEecCCCceeccCCcccchhhhh-cCchhHHHHhhcc------cceeEeeehhcCCeeeec
Confidence 99999999999988765432 22222 2455666666553 888888 886 4443343
No 361
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.57 E-value=3.3 Score=42.66 Aligned_cols=102 Identities=14% Similarity=0.130 Sum_probs=65.5
Q ss_pred eecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCce-eEE-e--CCcCeeeEEEcCCCC-eEEEEccCCCCCcEE
Q 020756 77 VPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP-ILE-L--GSGPYNTVRWNPKGK-FLCLAGFGNLPGDMA 151 (321)
Q Consensus 77 v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~-~~~-~--~~~~~~~~~~sPdG~-~l~~~g~~n~~g~i~ 151 (321)
....-++||+.+.+.-+++..+++.. ...|.+|.+.++. ... + +....+|..+++--. +|+.++ .-|+
T Consensus 166 ~~~~~~~pITgL~~~~d~~s~lFv~T--t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~-----e~l~ 238 (933)
T KOG2114|consen 166 YSHRGKEPITGLALRSDGKSVLFVAT--TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGS-----EFLY 238 (933)
T ss_pred eeccCCCCceeeEEecCCceeEEEEe--cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecC-----ceEE
Confidence 33345789999999999987443322 3479999997665 333 3 456789999997655 555544 6899
Q ss_pred EEECCCCeEEEeeeCCCeeeEEEccCCCEEEEEE
Q 020756 152 FWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTAT 185 (321)
Q Consensus 152 iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~t~~ 185 (321)
|||.+....--.+....-..+-|..-|.+|+...
T Consensus 239 fY~sd~~~~cfaf~~g~kk~~~~~~~g~~L~v~~ 272 (933)
T KOG2114|consen 239 FYDSDGRGPCFAFEVGEKKEMLVFSFGLLLCVTT 272 (933)
T ss_pred EEcCCCcceeeeecCCCeEEEEEEecCEEEEEEc
Confidence 9999765555555523333345555566555443
No 362
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.52 E-value=3.1 Score=36.69 Aligned_cols=93 Identities=13% Similarity=0.217 Sum_probs=58.3
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC--C------ceeEEeCC-cCee-----eEEEcCCCCeEEEEccCCC
Q 020756 81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK--C------RPILELGS-GPYN-----TVRWNPKGKFLCLAGFGNL 146 (321)
Q Consensus 81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~--~------~~~~~~~~-~~~~-----~~~~sPdG~~l~~~g~~n~ 146 (321)
.-+.-+.++|+-+.+.|.++ ....-.+.-||.+ + +.++.+.. .+.. -+...-+|.+.+.+= .
T Consensus 156 ~v~IsNgl~Wd~d~K~fY~i-Dsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~---n 231 (310)
T KOG4499|consen 156 CVGISNGLAWDSDAKKFYYI-DSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATF---N 231 (310)
T ss_pred hccCCccccccccCcEEEEE-ccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEe---c
Confidence 34555789999999988887 3445567667742 1 23444421 1111 122233455544443 4
Q ss_pred CCcEEEEECCCCeEEEeeeCC--CeeeEEEccC
Q 020756 147 PGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPD 177 (321)
Q Consensus 147 ~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpd 177 (321)
.++|.-.|..+|+.+..+.-+ .+++++|---
T Consensus 232 g~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 232 GGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred CcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 579999999999999888765 7888888543
No 363
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=94.42 E-value=1.9 Score=43.85 Aligned_cols=99 Identities=18% Similarity=0.180 Sum_probs=60.3
Q ss_pred eEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEc--cCCCeEEE
Q 020756 33 QLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYG--FMPASATI 110 (321)
Q Consensus 33 ~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g--~~~~~i~i 110 (321)
...-++.|..++.+... .+..... ....+|..+... ...+...+.+..+.|+|+|+.+++... .....+.+
T Consensus 17 ~~~~~~~~~~~~~i~~~-~~~~~~~--~~~~~~~~d~~~----~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l 89 (620)
T COG1506 17 DPRVSPPGGRLAYILTG-LDFLKPL--YKSSLWVSDGKT----VRLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYL 89 (620)
T ss_pred CcccCCCCceeEEeecc-ccccccc--cccceEEEeccc----ccccccCCcccccccCCCCCEEEEEeccCCCcceEEE
Confidence 34557777777776432 2222222 222344432221 223346678889999999999999752 22235666
Q ss_pred EeCCCceeEEeCCcCeeeEEEcCCCCeEEE
Q 020756 111 FNKKCRPILELGSGPYNTVRWNPKGKFLCL 140 (321)
Q Consensus 111 ~d~~~~~~~~~~~~~~~~~~~sPdG~~l~~ 140 (321)
.+..+ ........+....|+|+|+.+++
T Consensus 90 ~~~~g--~~~~~~~~v~~~~~~~~g~~~~~ 117 (620)
T COG1506 90 VDVGG--LITKTAFGVSDARWSPDGDRIAF 117 (620)
T ss_pred EecCC--ceeeeecccccceeCCCCCeEEE
Confidence 66663 33335667888999999999888
No 364
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.38 E-value=0.51 Score=45.93 Aligned_cols=127 Identities=13% Similarity=0.219 Sum_probs=77.5
Q ss_pred eeEEEEEcCCCceeeeecCCCCCeEEEEECcCCC--EEEE---EEccCCCeEEEEeCCCce--eEEe-------CCcCee
Q 020756 62 SKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGS--EFAV---VYGFMPASATIFNKKCRP--ILEL-------GSGPYN 127 (321)
Q Consensus 62 ~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~--~l~~---~~g~~~~~i~i~d~~~~~--~~~~-------~~~~~~ 127 (321)
..||.|++..+. ..-.-..+..|.-+.+.|+.+ ++.. ..|-.+..+.-||.+-+. +... .....+
T Consensus 356 ~~l~klDIE~GK-IVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFs 434 (644)
T KOG2395|consen 356 DKLYKLDIERGK-IVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFS 434 (644)
T ss_pred Ccceeeecccce-eeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccc
Confidence 347778776652 111112233477777777655 2221 124456678888875321 2211 223344
Q ss_pred eEEEcCCCCeEEEEccCCCCCcEEEEECCCCe-EEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756 128 TVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK-QLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 201 (321)
Q Consensus 128 ~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~-~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~ 201 (321)
|++=--+| +|++++ .+|.|++||. .+. -.+.+.+. .|..+..+.||++|+..+ ++.+.|-+.
T Consensus 435 c~aTT~sG-~IvvgS---~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-------~tyLlLi~t 499 (644)
T KOG2395|consen 435 CFATTESG-YIVVGS---LKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-------KTYLLLIDT 499 (644)
T ss_pred eeeecCCc-eEEEee---cCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-------ccEEEEEEE
Confidence 55444444 788888 9999999998 443 33334443 789999999999998877 777777765
No 365
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=94.37 E-value=0.78 Score=42.12 Aligned_cols=90 Identities=17% Similarity=0.389 Sum_probs=62.4
Q ss_pred eeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe--EEEeeeCCCeeeEEEccCCCEEEEEEcCCce-------------
Q 020756 126 YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK--QLGTTRAECSVTSEWSPDGRYFMTATTAPRL------------- 190 (321)
Q Consensus 126 ~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~--~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl------------- 190 (321)
-.+.+|+ +|++-++-+ ..|.|.-+|.++|+ .+..+.+ ....+.|. |++++++.|.+|-
T Consensus 205 PhSPRWh-dgrLwvlds---gtGev~~vD~~~G~~e~Va~vpG-~~rGL~f~--G~llvVgmSk~R~~~~f~glpl~~~l 277 (335)
T TIGR03032 205 PHSPRWY-QGKLWLLNS---GRGELGYVDPQAGKFQPVAFLPG-FTRGLAFA--GDFAFVGLSKLRESRVFGGLPIEERL 277 (335)
T ss_pred CcCCcEe-CCeEEEEEC---CCCEEEEEcCCCCcEEEEEECCC-CCccccee--CCEEEEEeccccCCCCcCCCchhhhh
Confidence 3455666 566666655 66899999988774 4444443 66778888 9999999998872
Q ss_pred e-ecCcEEEEee-cCcee----EEeccCceEEEEEecC
Q 020756 191 Q-IDNGIKIFHH-NGSLF----FKKMFDKLFQAEWKPV 222 (321)
Q Consensus 191 ~-~d~~v~iw~~-~g~~l----~~~~~~~~~~~~w~P~ 222 (321)
. ...++.+-|+ +|..+ +.....++++++.=|.
T Consensus 278 ~~~~CGv~vidl~tG~vv~~l~feg~v~EifdV~vLPg 315 (335)
T TIGR03032 278 DALGCGVAVIDLNSGDVVHWLRFEGVIEEIYDVAVLPG 315 (335)
T ss_pred hhhcccEEEEECCCCCEEEEEEeCCceeEEEEEEEecC
Confidence 1 1256888887 56655 3345569999988875
No 366
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.14 E-value=4.7 Score=37.15 Aligned_cols=134 Identities=16% Similarity=0.229 Sum_probs=68.0
Q ss_pred eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc---eeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEE
Q 020756 75 GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---PILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMA 151 (321)
Q Consensus 75 ~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~---~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~ 151 (321)
..+.....+.+.++.-++||+++++. ....-..-||--.. +........+..+.|+|++.+.+++ ..|.|.
T Consensus 137 ~~~~~~~~gs~~~~~r~~dG~~vavs--~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~----~Gg~~~ 210 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSSDGRYVAVS--SRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA----RGGQIQ 210 (302)
T ss_dssp EEEE-S----EEEEEE-TTS-EEEEE--TTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE----TTTEEE
T ss_pred eEcccCCcceeEeEEECCCCcEEEEE--CcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe----CCcEEE
Confidence 44444557889999999999988883 33334455665332 2223357789999999999887765 457888
Q ss_pred EEE-CCCCeEEEe----e--eCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC-ceeEEec-----cCceEEEE
Q 020756 152 FWD-YVDGKQLGT----T--RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG-SLFFKKM-----FDKLFQAE 218 (321)
Q Consensus 152 iwD-~~~~~~i~~----~--~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g-~~l~~~~-----~~~~~~~~ 218 (321)
+=| ....+.-.. + ....+.+++|.++++..+++. .+.+ +...+| +--.+.. ...+|.+.
T Consensus 211 ~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-------~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~ 282 (302)
T PF14870_consen 211 FSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-------SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIV 282 (302)
T ss_dssp EEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-------TT-E-EEESSTTSS-EE-GGGTTSSS---EEE
T ss_pred EccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-------CccE-EEeCCCCccceECccccCCCCceEEEE
Confidence 776 222222211 1 122578899999999888777 3433 333443 3222221 23678887
Q ss_pred EecC
Q 020756 219 WKPV 222 (321)
Q Consensus 219 w~P~ 222 (321)
|.+.
T Consensus 283 f~~~ 286 (302)
T PF14870_consen 283 FVNP 286 (302)
T ss_dssp EEET
T ss_pred EcCC
Confidence 7654
No 367
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=93.94 E-value=2.8 Score=43.81 Aligned_cols=133 Identities=17% Similarity=0.326 Sum_probs=82.7
Q ss_pred eecCCCCCeEEEEEC---c----CCCEEEEEEccCCCeEEEEe------C----------CCceeEEe-----CCcCeee
Q 020756 77 VPLRKEGPVHDVQWS---Y----SGSEFAVVYGFMPASATIFN------K----------KCRPILEL-----GSGPYNT 128 (321)
Q Consensus 77 v~l~~~~~v~~~~ws---P----~g~~l~~~~g~~~~~i~i~d------~----------~~~~~~~~-----~~~~~~~ 128 (321)
..+.-..||..+.|+ . ..+.|+|- ....++|+. . ..+++..+ +..+...
T Consensus 74 w~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vr---t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aD 150 (765)
T PF10214_consen 74 WSIDDGSPIKQIKFATLSESFDEKSRWLAVR---TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHAD 150 (765)
T ss_pred eEcCCCCCeeEEEecccccccCCcCcEEEEE---cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccce
Confidence 444567899999998 2 23467764 345677776 1 12455555 4457788
Q ss_pred EEEcC-CCCeEEEEccCCCCCcEEEEECCCCe-----EE-------Eee-eCC----CeeeEEEccCCCEEEEEEcCCce
Q 020756 129 VRWNP-KGKFLCLAGFGNLPGDMAFWDYVDGK-----QL-------GTT-RAE----CSVTSEWSPDGRYFMTATTAPRL 190 (321)
Q Consensus 129 ~~~sP-dG~~l~~~g~~n~~g~i~iwD~~~~~-----~i-------~~~-~~~----~~~~~~wSpdG~~l~t~~s~~rl 190 (321)
++|+| +.+.||+.. ..|+..|||+.... .+ ..+ ... .-..+.|.++-..|+.+.
T Consensus 151 v~FnP~~~~q~AiVD---~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~----- 222 (765)
T PF10214_consen 151 VAFNPWDQRQFAIVD---EKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN----- 222 (765)
T ss_pred EEeccCccceEEEEe---ccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-----
Confidence 99999 456888887 78999999992110 01 112 111 223689999988888888
Q ss_pred eecCcEEEEeecCcee-----EEeccCceEEEEEecC
Q 020756 191 QIDNGIKIFHHNGSLF-----FKKMFDKLFQAEWKPV 222 (321)
Q Consensus 191 ~~d~~v~iw~~~g~~l-----~~~~~~~~~~~~w~P~ 222 (321)
...+.++|+.+... .....+.+.++.=+|.
T Consensus 223 --r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 223 --RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred --CCceEEEECCCCCccchhccCCChhheeeEEecCC
Confidence 67888888855422 2223345555555554
No 368
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=93.86 E-value=5.6 Score=37.08 Aligned_cols=117 Identities=13% Similarity=0.141 Sum_probs=69.2
Q ss_pred EEEEECcCCCEEEEEEccCCCeEEEEeCCCceeE---Ee------------CCcCeeeEEEcCCCCeEEEEcc----CC-
Q 020756 86 HDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL---EL------------GSGPYNTVRWNPKGKFLCLAGF----GN- 145 (321)
Q Consensus 86 ~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~---~~------------~~~~~~~~~~sPdG~~l~~~g~----~n- 145 (321)
..-+++..+..+.++ .-.|.++-.|+.+.... .+ ..+...-+++++..+.|.+.-. ++
T Consensus 187 ~~~~~~~~~~~~~F~--Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsH 264 (342)
T PF06433_consen 187 EHPAYSRDGGRLYFV--SYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSH 264 (342)
T ss_dssp S--EEETTTTEEEEE--BTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-T
T ss_pred cccceECCCCeEEEE--ecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCc
Confidence 355666555555543 33567777777554221 11 1234456888876554444311 11
Q ss_pred --CCCcEEEEECCCCeEEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEE
Q 020756 146 --LPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFK 208 (321)
Q Consensus 146 --~~g~i~iwD~~~~~~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~ 208 (321)
-...|+++|+.+++.+..++. +.+.++..|.|.+=++.+.+. .++.+.|||. +|+++..
T Consensus 265 KdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~----~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 265 KDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSA----GDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp TS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEET----TTTEEEEEETTT--EEEE
T ss_pred cCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcC----CCCeEEEEeCcCCcEEee
Confidence 123799999999999998885 367789999998866655431 3678999997 6777744
No 369
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=93.81 E-value=0.42 Score=49.22 Aligned_cols=92 Identities=14% Similarity=0.169 Sum_probs=69.2
Q ss_pred CeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCCCeeeEEEccCCCEEE
Q 020756 106 ASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFM 182 (321)
Q Consensus 106 ~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~ 182 (321)
..+..+|+.+...... ....+.-++.+ ++++..+. ..|+|.+-|.++.+.+.++.+|.-.-.+|+-.|..|+
T Consensus 157 ~~li~~Dl~~~~e~r~~~v~a~~v~imR~N--nr~lf~G~---t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~GNlLi 231 (1118)
T KOG1275|consen 157 EKLIHIDLNTEKETRTTNVSASGVTIMRYN--NRNLFCGD---TRGTVFLRDPNSFETIHTFDAHSGSISDFDVQGNLLI 231 (1118)
T ss_pred hheeeeecccceeeeeeeccCCceEEEEec--CcEEEeec---ccceEEeecCCcCceeeeeeccccceeeeeccCCeEE
Confidence 3566677765544333 34446566664 67777776 7799999999999999999999666668999999999
Q ss_pred EEEcCCce---eecCcEEEEeec
Q 020756 183 TATTAPRL---QIDNGIKIFHHN 202 (321)
Q Consensus 183 t~~s~~rl---~~d~~v~iw~~~ 202 (321)
+++-+-|. -.|.-+++||+.
T Consensus 232 tCG~S~R~~~l~~D~FvkVYDLR 254 (1118)
T KOG1275|consen 232 TCGYSMRRYNLAMDPFVKVYDLR 254 (1118)
T ss_pred Eeecccccccccccchhhhhhhh
Confidence 98866554 368889999983
No 370
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.75 E-value=0.56 Score=49.52 Aligned_cols=138 Identities=11% Similarity=0.090 Sum_probs=87.0
Q ss_pred ecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc---------eeEE----e-CCcCeeeEEEcCCCCeEEEEcc
Q 020756 78 PLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---------PILE----L-GSGPYNTVRWNPKGKFLCLAGF 143 (321)
Q Consensus 78 ~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~---------~~~~----~-~~~~~~~~~~sPdG~~l~~~g~ 143 (321)
.+.++-+|+.+...+|+...+++....+--|..||++.- ++.. + .....-++.|+|.=-...+...
T Consensus 96 ~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l 175 (1405)
T KOG3630|consen 96 KVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDL 175 (1405)
T ss_pred eeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhc
Confidence 345678999999999999888876666558889998421 1111 1 1223457899986433222221
Q ss_pred CCCCCcEEEEECCCCe-EEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEec------cCceE
Q 020756 144 GNLPGDMAFWDYVDGK-QLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKM------FDKLF 215 (321)
Q Consensus 144 ~n~~g~i~iwD~~~~~-~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~------~~~~~ 215 (321)
.|+.|.+.-+.-.. .+.++.- ...++++|||.|+-++.+.. .+++.-|...++.....+ ...+.
T Consensus 176 --~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n------nGt~vQy~P~leik~~ip~Pp~~e~yrvl 247 (1405)
T KOG3630|consen 176 --SDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN------NGTEVQYEPSLEIKSEIPEPPVEENYRVL 247 (1405)
T ss_pred --cccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC------CCeEEEeecccceeecccCCCcCCCccee
Confidence 45777776654332 2233222 37788999999999999984 677888888777543332 23566
Q ss_pred EEEEecCC
Q 020756 216 QAEWKPVS 223 (321)
Q Consensus 216 ~~~w~P~~ 223 (321)
++.|--..
T Consensus 248 ~v~Wl~t~ 255 (1405)
T KOG3630|consen 248 SVTWLSTQ 255 (1405)
T ss_pred EEEEecce
Confidence 77775433
No 371
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=93.65 E-value=0.53 Score=48.88 Aligned_cols=77 Identities=16% Similarity=0.137 Sum_probs=54.1
Q ss_pred eEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCC--C--eEEEEeCCCc--eeE--EeCCcCeeeEEEcCC
Q 020756 63 KLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMP--A--SATIFNKKCR--PIL--ELGSGPYNTVRWNPK 134 (321)
Q Consensus 63 ~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~--~--~i~i~d~~~~--~~~--~~~~~~~~~~~~sPd 134 (321)
+|.+++.+|...+.+.+....+|...+|||||++|+.|.+.+. + .|.+-|+... ... ......|-.-+..++
T Consensus 330 ~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~aaiprwrv~e~ 409 (912)
T TIGR02171 330 NLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVENAAIPRWRVLEN 409 (912)
T ss_pred eEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeecccccccceEecCC
Confidence 6899999998777787888999999999999999999666655 4 4666677432 222 224444545555666
Q ss_pred CCeEE
Q 020756 135 GKFLC 139 (321)
Q Consensus 135 G~~l~ 139 (321)
|..++
T Consensus 410 gdt~i 414 (912)
T TIGR02171 410 GDTVI 414 (912)
T ss_pred CCeEE
Confidence 66443
No 372
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=93.24 E-value=0.63 Score=46.91 Aligned_cols=87 Identities=21% Similarity=0.471 Sum_probs=59.6
Q ss_pred eEEEEEcCCCc-eeeeecCCCCCeEEEEEC--cCCCEEEEEEccCCCeEEEEeC-C---------CceeEEe-----CCc
Q 020756 63 KLNYLTTDGTH-EGLVPLRKEGPVHDVQWS--YSGSEFAVVYGFMPASATIFNK-K---------CRPILEL-----GSG 124 (321)
Q Consensus 63 ~l~~l~~~g~~-~~~v~l~~~~~v~~~~ws--P~g~~l~~~~g~~~~~i~i~d~-~---------~~~~~~~-----~~~ 124 (321)
.|..++..+.. +....+...+.|.|+.|. |+|+.+..+ |+ +..|.+|.. + ..++..+ ...
T Consensus 52 ~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaV-Gf-~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h 129 (631)
T PF12234_consen 52 ELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAV-GF-PHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPH 129 (631)
T ss_pred EEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEE-Ec-CcEEEEEEccchhhhcCCcccceeEEEEeecCCCC
Confidence 46677766543 222333568899999994 688876665 44 678888843 1 1233333 347
Q ss_pred CeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756 125 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 156 (321)
Q Consensus 125 ~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~ 156 (321)
++.+..|-++|.+++.+| ..+.|+|-.
T Consensus 130 ~Igds~Wl~~G~LvV~sG-----Nqlfv~dk~ 156 (631)
T PF12234_consen 130 PIGDSIWLKDGTLVVGSG-----NQLFVFDKW 156 (631)
T ss_pred CccceeEecCCeEEEEeC-----CEEEEECCC
Confidence 899999999999998887 588888753
No 373
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=93.09 E-value=5.3 Score=34.47 Aligned_cols=100 Identities=15% Similarity=0.171 Sum_probs=58.6
Q ss_pred CCCEEEEEEccCCCeEEEEeCC-CceeEEe--CCcC----------e-eeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756 93 SGSEFAVVYGFMPASATIFNKK-CRPILEL--GSGP----------Y-NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 158 (321)
Q Consensus 93 ~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~~~~----------~-~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~ 158 (321)
++..+++. ...+.+..+|.+ ++.+... +... . ..+.+. +| .|.+++ .++.+.-+|+.++
T Consensus 121 ~~~~~~~~--~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~---~~g~~~~~d~~tg 193 (238)
T PF13360_consen 121 DGDRLYVG--TSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSS---GDGRVVAVDLATG 193 (238)
T ss_dssp ETTEEEEE--ETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEEC---CTSSEEEEETTTT
T ss_pred ecCEEEEE--eccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEc---CCCeEEEEECCCC
Confidence 37777764 447799999985 5554444 2211 1 223333 45 666655 4554443499999
Q ss_pred eEEEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCcee
Q 020756 159 KQLGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLF 206 (321)
Q Consensus 159 ~~i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l 206 (321)
+.+-........ .....+|..|+.++. ++.+.+||. +|+.+
T Consensus 194 ~~~w~~~~~~~~-~~~~~~~~~l~~~~~------~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 194 EKLWSKPISGIY-SLPSVDGGTLYVTSS------DGRLYALDLKTGKVV 235 (238)
T ss_dssp EEEEEECSS-EC-ECEECCCTEEEEEET------TTEEEEEETTTTEEE
T ss_pred CEEEEecCCCcc-CCceeeCCEEEEEeC------CCEEEEEECCCCCEE
Confidence 866332212222 225677888887774 899999998 45544
No 374
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=93.07 E-value=0.12 Score=53.11 Aligned_cols=79 Identities=11% Similarity=0.214 Sum_probs=63.6
Q ss_pred ceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCcee
Q 020756 116 RPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQ 191 (321)
Q Consensus 116 ~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~ 191 (321)
..+.+| ++....+++||-+.++|+++. ..|.|++|++.+|....+...| .++.++=|-||..+++.+++-+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~---~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~-- 1166 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGS---HAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS-- 1166 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeee---ccceEEEEEccCccccccccccccccccccccCCcceeeeeccccC--
Confidence 345556 567788999999999999998 8899999999999888777776 6888999999999998886422
Q ss_pred ecCcEEEEee
Q 020756 192 IDNGIKIFHH 201 (321)
Q Consensus 192 ~d~~v~iw~~ 201 (321)
--..+|+.
T Consensus 1167 --PlsaLW~~ 1174 (1516)
T KOG1832|consen 1167 --PLSALWDA 1174 (1516)
T ss_pred --chHHHhcc
Confidence 13456766
No 375
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.01 E-value=0.52 Score=47.19 Aligned_cols=119 Identities=11% Similarity=0.054 Sum_probs=77.2
Q ss_pred eeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC-CCCCeEEEEECcCCCEEEEE
Q 020756 22 ARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-KEGPVHDVQWSYSGSEFAVV 100 (321)
Q Consensus 22 ~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~-~~~~v~~~~wsP~g~~l~~~ 100 (321)
.+..||.....-=.....+++|++.+++ | .||+.+..++........ ..+.+..+..|++....|.
T Consensus 27 ~~~~~~~~~v~lTc~dst~~~l~~GsS~----------G--~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAa- 93 (726)
T KOG3621|consen 27 LQPGFFPARVKLTCVDATEEYLAMGSSA----------G--SVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAA- 93 (726)
T ss_pred hccccCcceEEEEEeecCCceEEEeccc----------c--eEEEEecCchhhhcccccCccceEEEEEecchhHhhhh-
Confidence 3445554444444456777888776432 2 266666666544443322 3556677788887766655
Q ss_pred EccCCCeEEEEeCCC----cee--EEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756 101 YGFMPASATIFNKKC----RPI--LEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 157 (321)
Q Consensus 101 ~g~~~~~i~i~d~~~----~~~--~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~ 157 (321)
|...+.|.+|-+.. ..+ ..+ |...|.++.|+++|..+.++. ..|.|..--+++
T Consensus 94 -gt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD---~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 94 -GTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGD---SQGKVVLTELDS 155 (726)
T ss_pred -hcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecC---CCceEEEEEech
Confidence 66678999997632 112 122 467899999999999999987 778888776665
No 376
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.98 E-value=7.1 Score=35.60 Aligned_cols=158 Identities=14% Similarity=0.146 Sum_probs=93.0
Q ss_pred CccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 020756 29 CSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA 108 (321)
Q Consensus 29 ~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i 108 (321)
.+...+.|||+.+.|..++. +. ..|.-++..|.-...+++.--..-..+.|.-+|.+.++ ...+..+
T Consensus 86 ~nvS~LTynp~~rtLFav~n-------~p----~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~--dER~~~l 152 (316)
T COG3204 86 ANVSSLTYNPDTRTLFAVTN-------KP----AAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIV--DERDRAL 152 (316)
T ss_pred ccccceeeCCCcceEEEecC-------CC----ceEEEEecCCceEEEecccccCChhHeEEecCCEEEEE--ehhcceE
Confidence 45778999999998887632 11 23556677787777788775555567888877765444 4567788
Q ss_pred EEEeCCCc--------eeEEeC-----CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe----EEE------eee
Q 020756 109 TIFNKKCR--------PILELG-----SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK----QLG------TTR 165 (321)
Q Consensus 109 ~i~d~~~~--------~~~~~~-----~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~----~i~------~~~ 165 (321)
+++.+... ....++ +....-++|.|..+.|.++-..+ --.|+.|+..... ... .+.
T Consensus 153 ~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~-P~~I~~~~~~~~~l~~~~~~~~~~~~~~f 231 (316)
T COG3204 153 YLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN-PIGIFEVTQSPSSLSVHASLDPTADRDLF 231 (316)
T ss_pred EEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC-CcEEEEEecCCcccccccccCcccccceE
Confidence 88866322 122332 34556799999998888876222 1244444422110 000 111
Q ss_pred CCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce
Q 020756 166 AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 205 (321)
Q Consensus 166 ~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~ 205 (321)
...++.++|.+...+|+.-+. .+..+.-.|..|+.
T Consensus 232 ~~DvSgl~~~~~~~~LLVLS~-----ESr~l~Evd~~G~~ 266 (316)
T COG3204 232 VLDVSGLEFNAITNSLLVLSD-----ESRRLLEVDLSGEV 266 (316)
T ss_pred eeccccceecCCCCcEEEEec-----CCceEEEEecCCCe
Confidence 125566788875444444442 34445556666654
No 377
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=92.98 E-value=3.5 Score=41.94 Aligned_cols=149 Identities=15% Similarity=0.233 Sum_probs=86.7
Q ss_pred ecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEc--
Q 020756 25 SFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYG-- 102 (321)
Q Consensus 25 ~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g-- 102 (321)
..+......+.|+|+|..+++... .+.. ...+|++...+ .+ ..+...+....|+|+|+.+++...
T Consensus 56 ~~~~~~~~~~~~spdg~~~~~~~~-----~~~~---~~~l~l~~~~g----~~-~~~~~~v~~~~~~~~g~~~~~~~~~~ 122 (620)
T COG1506 56 LTFGGGVSELRWSPDGSVLAFVST-----DGGR---VAQLYLVDVGG----LI-TKTAFGVSDARWSPDGDRIAFLTAEG 122 (620)
T ss_pred cccCCcccccccCCCCCEEEEEec-----cCCC---cceEEEEecCC----ce-eeeecccccceeCCCCCeEEEEeccc
Confidence 345667788999999999998741 1111 34577777663 11 134567889999999999888310
Q ss_pred --cCCCe-------EEEE-eCCC-c-----------eeEEe--CCcCeeeEEEcCCCCeEEEEccCCC-C---CcEEEEE
Q 020756 103 --FMPAS-------ATIF-NKKC-R-----------PILEL--GSGPYNTVRWNPKGKFLCLAGFGNL-P---GDMAFWD 154 (321)
Q Consensus 103 --~~~~~-------i~i~-d~~~-~-----------~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~-~---g~i~iwD 154 (321)
..++. +.+| +.++ + ..... ....+....++++++.++....... + ....+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (620)
T COG1506 123 ASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGLGNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLI 202 (620)
T ss_pred ccccCCceeeeecccceeecCCCCcccceEEEccCcccccccCCCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEe
Confidence 11111 2222 2222 1 11111 3445566677777777777653211 2 2344444
Q ss_pred CCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEc
Q 020756 155 YVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATT 186 (321)
Q Consensus 155 ~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s 186 (321)
..++......... .+..+.|.++|+.++....
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~~ 235 (620)
T COG1506 203 EGNGELESLTPGEGSISKLAFDADGKSIALLGT 235 (620)
T ss_pred cCCCceEEEcCCCceeeeeeeCCCCCeeEEecc
Confidence 4466555555543 6778899999997666554
No 378
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.86 E-value=3.1 Score=39.26 Aligned_cols=139 Identities=14% Similarity=0.152 Sum_probs=75.6
Q ss_pred CeEEEEECcCCCEEEEEEc---------cCCC-eEEEEeC-C--Cc--eeEEe--CCcCeeeEEEcCCCCeEEEEccCCC
Q 020756 84 PVHDVQWSYSGSEFAVVYG---------FMPA-SATIFNK-K--CR--PILEL--GSGPYNTVRWNPKGKFLCLAGFGNL 146 (321)
Q Consensus 84 ~v~~~~wsP~g~~l~~~~g---------~~~~-~i~i~d~-~--~~--~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~ 146 (321)
....++|.++|+.+++... ...+ +|.+++- . +. ....| +......+.+.++| ++++.
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~----- 88 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVAT----- 88 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeC-----
Confidence 3457899999997766321 1122 6776643 2 22 23444 33445779999999 44432
Q ss_pred CCcEEEE-ECCC-------CeEE-Eeee------CCCeeeEEEccCCCEEEEEEcC-------C------ceeecCcEEE
Q 020756 147 PGDMAFW-DYVD-------GKQL-GTTR------AECSVTSEWSPDGRYFMTATTA-------P------RLQIDNGIKI 198 (321)
Q Consensus 147 ~g~i~iw-D~~~-------~~~i-~~~~------~~~~~~~~wSpdG~~l~t~~s~-------~------rl~~d~~v~i 198 (321)
...|..| |.+. .+.+ ..+. +|....+.|.|||.+.++-++. + .....+.+.-
T Consensus 89 ~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r 168 (367)
T TIGR02604 89 PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFR 168 (367)
T ss_pred CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEE
Confidence 2456655 4431 1222 2222 2346679999999877765531 0 0111234555
Q ss_pred EeecCcee--EEeccCceEEEEEecCCCCCCC
Q 020756 199 FHHNGSLF--FKKMFDKLFQAEWKPVSPDKFG 228 (321)
Q Consensus 199 w~~~g~~l--~~~~~~~~~~~~w~P~~~~~~~ 228 (321)
++.+|..+ +.......+.+.|+|+....++
T Consensus 169 ~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 169 YNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFC 200 (367)
T ss_pred EecCCCeEEEEecCcCCCccceECCCCCEEEE
Confidence 55565544 2233445678899997655444
No 379
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=92.85 E-value=4.2 Score=37.71 Aligned_cols=40 Identities=15% Similarity=0.417 Sum_probs=33.1
Q ss_pred eEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc
Q 020756 159 KQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 204 (321)
Q Consensus 159 ~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~ 204 (321)
..+.++.+| .++.+.|.+..+.|.++.+ |..+..||+-|.
T Consensus 188 ~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~------d~~vi~wdigg~ 229 (404)
T KOG1409|consen 188 QLITTFNGHTGEVTCLKWDPGQRLLFSGAS------DHSVIMWDIGGR 229 (404)
T ss_pred ceEEEEcCcccceEEEEEcCCCcEEEeccc------cCceEEEeccCC
Confidence 456677776 7888999999998999885 999999999553
No 380
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=92.74 E-value=0.32 Score=29.71 Aligned_cols=31 Identities=23% Similarity=0.589 Sum_probs=20.6
Q ss_pred CcCeeeEEEcCCCCeEEEEccCCCCCcEEEE
Q 020756 123 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW 153 (321)
Q Consensus 123 ~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw 153 (321)
...-....|||||+.|++++..+..|...||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 4456679999999999998844322555555
No 381
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=92.70 E-value=0.25 Score=30.23 Aligned_cols=27 Identities=26% Similarity=0.690 Sum_probs=20.0
Q ss_pred CeeeEEEccCCCEEEEEEcCCceeec--CcEEEE
Q 020756 168 CSVTSEWSPDGRYFMTATTAPRLQID--NGIKIF 199 (321)
Q Consensus 168 ~~~~~~wSpdG~~l~t~~s~~rl~~d--~~v~iw 199 (321)
......|||||++|+.++.. + +...||
T Consensus 10 ~~~~p~~SpDGk~i~f~s~~-----~~~g~~diy 38 (39)
T PF07676_consen 10 DDGSPAWSPDGKYIYFTSNR-----NDRGSFDIY 38 (39)
T ss_dssp SEEEEEE-TTSSEEEEEEEC-----T--SSEEEE
T ss_pred cccCEEEecCCCEEEEEecC-----CCCCCcCEE
Confidence 56678999999999999963 4 556666
No 382
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=92.69 E-value=0.72 Score=47.02 Aligned_cols=93 Identities=15% Similarity=0.343 Sum_probs=58.1
Q ss_pred eeeEEEcCCCCeEEEEccCCC--CCcEEEEECCCCeEEEee-----eCCCeeeEEEccCCCEEEEEEcCCceeecCcEEE
Q 020756 126 YNTVRWNPKGKFLCLAGFGNL--PGDMAFWDYVDGKQLGTT-----RAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKI 198 (321)
Q Consensus 126 ~~~~~~sPdG~~l~~~g~~n~--~g~i~iwD~~~~~~i~~~-----~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~i 198 (321)
-..++|-|+|+.+++.+.... .-.|.|+..+ |-.-..+ ........+|.-...-++.+. .|.+++
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErN-GLrHGef~lr~~~dEk~~~~~wn~~s~vlav~~-------~n~~~l 320 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERN-GLRHGEFDLRVGCDEKAFLENWNLLSTVLAVAE-------GNLLKL 320 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEccC-CcccCCccccCCchhhhhhhhhhHHHHHHHHhh-------cceEEE
Confidence 345899999999999873222 1256666543 2111111 112445578888877777777 889999
Q ss_pred EeecCcee---EEeccCceEEEEEecCCCCC
Q 020756 199 FHHNGSLF---FKKMFDKLFQAEWKPVSPDK 226 (321)
Q Consensus 199 w~~~g~~l---~~~~~~~~~~~~w~P~~~~~ 226 (321)
|....... .....+.+.-+.|+|.....
T Consensus 321 wttkNyhWYLK~e~~ip~~s~vkwhpe~~nT 351 (1243)
T COG5290 321 WTTKNYHWYLKVERQIPGISYVKWHPEEKNT 351 (1243)
T ss_pred EEccceEEEEEEeecCCCcceeeeccccCcE
Confidence 97543322 33345677778999976543
No 383
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.68 E-value=3.9 Score=38.13 Aligned_cols=142 Identities=11% Similarity=0.189 Sum_probs=74.7
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEEeCCCce---eEEe------CCcCeeeEEEcCC----CCeEEEEcc---CC--C
Q 020756 85 VHDVQWSYSGSEFAVVYGFMPASATIFNKKCRP---ILEL------GSGPYNTVRWNPK----GKFLCLAGF---GN--L 146 (321)
Q Consensus 85 v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~---~~~~------~~~~~~~~~~sPd----G~~l~~~g~---~n--~ 146 (321)
-..++|.|||+.|+. ...++|.+++..+.. +..+ +......++++|+ +.+.++... .+ .
T Consensus 4 P~~~a~~pdG~l~v~---e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA---ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp EEEEEEETTSCEEEE---ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred ceEEEEeCCCcEEEE---eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 357999999987776 457899999954443 2232 3456678999995 443333321 00 1
Q ss_pred CCcEEEEECCCC-------e-EEEeee-----CCCeeeEEEccCCCEEEEEEcCCc------ee-ecCcEEEEeecCc--
Q 020756 147 PGDMAFWDYVDG-------K-QLGTTR-----AECSVTSEWSPDGRYFMTATTAPR------LQ-IDNGIKIFHHNGS-- 204 (321)
Q Consensus 147 ~g~i~iwD~~~~-------~-~i~~~~-----~~~~~~~~wSpdG~~l~t~~s~~r------l~-~d~~v~iw~~~g~-- 204 (321)
...|.-|.+... + .+.... .|....+.|.|||.++++.++.-- +. ..+.|.-.+.+|.
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 124444444332 1 122222 246677999999977776664221 00 1122333344554
Q ss_pred -------------eeEEeccCceEEEEEecCCCCCCCC
Q 020756 205 -------------LFFKKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 205 -------------~l~~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
.++..-....+.++|.|....++..
T Consensus 161 ~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~ 198 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAA 198 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEE
T ss_pred CCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEE
Confidence 2233444567789999985566644
No 384
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=92.59 E-value=0.035 Score=54.78 Aligned_cols=140 Identities=15% Similarity=0.217 Sum_probs=87.5
Q ss_pred CCCCCeEEEEECcC-CCEEEEEEc--cCCCeEEEEeCCCc---eeEE--e---CCcCeeeEEEcCCCCeEEEEccCCCCC
Q 020756 80 RKEGPVHDVQWSYS-GSEFAVVYG--FMPASATIFNKKCR---PILE--L---GSGPYNTVRWNPKGKFLCLAGFGNLPG 148 (321)
Q Consensus 80 ~~~~~v~~~~wsP~-g~~l~~~~g--~~~~~i~i~d~~~~---~~~~--~---~~~~~~~~~~sPdG~~l~~~g~~n~~g 148 (321)
.+..++++++|++- ...||.... ..+..+.|||+... +.-+ | -....++++|--|-++|+++. ...
T Consensus 100 ~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm---~sr 176 (783)
T KOG1008|consen 100 GYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGM---TSR 176 (783)
T ss_pred cccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhccc---ccc
Confidence 45678999999984 455655211 23447899998432 2221 1 123566888987776666665 456
Q ss_pred cEEEEECC-CCeEEEeeeCCCeeeEEEcc-CCCEEEEEEcCCceeecCcEEEEee-c--Ccee----EE--eccCceEEE
Q 020756 149 DMAFWDYV-DGKQLGTTRAECSVTSEWSP-DGRYFMTATTAPRLQIDNGIKIFHH-N--GSLF----FK--KMFDKLFQA 217 (321)
Q Consensus 149 ~i~iwD~~-~~~~i~~~~~~~~~~~~wSp-dG~~l~t~~s~~rl~~d~~v~iw~~-~--g~~l----~~--~~~~~~~~~ 217 (321)
.+.++|++ +......+....+..+..+| .+.|++... |+.+-|||. . ...+ .. ..++.+..+
T Consensus 177 ~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-------dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~ 249 (783)
T KOG1008|consen 177 SVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-------DGDIAIWDTYRNIENPLQIILRNENKKPKQLFAL 249 (783)
T ss_pred hhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-------cCceeeccchhhhccHHHHHhhCCCCcccceeeE
Confidence 89999987 32333333333445567777 777877666 999999993 1 1111 11 123469999
Q ss_pred EEecCCCCCCCC
Q 020756 218 EWKPVSPDKFGD 229 (321)
Q Consensus 218 ~w~P~~~~~~~~ 229 (321)
+|.|..+.++..
T Consensus 250 aycPtrtglla~ 261 (783)
T KOG1008|consen 250 AYCPTRTGLLAV 261 (783)
T ss_pred EeccCCcchhhh
Confidence 999988877754
No 385
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.29 E-value=0.98 Score=39.54 Aligned_cols=62 Identities=13% Similarity=0.244 Sum_probs=45.1
Q ss_pred EcCCCCeEEEEccCCCCCcEEEEECCCCeEEEee----------------eCCCeeeEEEccCCCEEEEEEcCCceeecC
Q 020756 131 WNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT----------------RAECSVTSEWSPDGRYFMTATTAPRLQIDN 194 (321)
Q Consensus 131 ~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~----------------~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~ 194 (321)
...+|++|++.. .+|.+++||+.+++.+... ....+..+..+.+|.-|++-+ ++
T Consensus 18 l~~~~~~Ll~iT---~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-------ng 87 (219)
T PF07569_consen 18 LECNGSYLLAIT---SSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-------NG 87 (219)
T ss_pred EEeCCCEEEEEe---CCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-------CC
Confidence 445688888877 8899999999988765432 223667788888888887766 56
Q ss_pred cEEEEeec
Q 020756 195 GIKIFHHN 202 (321)
Q Consensus 195 ~v~iw~~~ 202 (321)
....||.+
T Consensus 88 ~~y~y~~~ 95 (219)
T PF07569_consen 88 DSYSYSPD 95 (219)
T ss_pred CEEEeccc
Confidence 66777654
No 386
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=92.13 E-value=2.4 Score=31.47 Aligned_cols=53 Identities=17% Similarity=0.163 Sum_probs=35.9
Q ss_pred CCCcEEEEECCCCeEEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756 146 LPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 203 (321)
Q Consensus 146 ~~g~i~iwD~~~~~~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g 203 (321)
..|.+.-||..+++....... .....++.|+|+.+++.+-+. ...|.=|.+.|
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~-----~~Ri~rywl~G 88 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETG-----RYRILRYWLKG 88 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGG-----GTEEEEEESSS
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEecc-----CceEEEEEEeC
Confidence 468899999999875444444 377889999999999999863 44444444454
No 387
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.80 E-value=7.8 Score=37.49 Aligned_cols=100 Identities=11% Similarity=0.179 Sum_probs=68.2
Q ss_pred CCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCcee---E----EeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEE
Q 020756 80 RKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI---L----ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF 152 (321)
Q Consensus 80 ~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~---~----~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~i 152 (321)
..+|+|.++.||+|.+.+|+- ..+..+.+++..++.- . ..+...+-.+.|+.. +-|++.. +..|.+
T Consensus 64 ~d~G~I~SIkFSlDnkilAVQ--R~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~----~~G~e~ 136 (657)
T KOG2377|consen 64 DDKGEIKSIKFSLDNKILAVQ--RTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFIT----DQGIEF 136 (657)
T ss_pred cCCCceeEEEeccCcceEEEE--ecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEe----cCCeEE
Confidence 368899999999999999995 6678999998743311 1 114455777889866 6666664 345777
Q ss_pred EECCCC-eEEEeeeCC--CeeeEEEccCCCEEEEEEc
Q 020756 153 WDYVDG-KQLGTTRAE--CSVTSEWSPDGRYFMTATT 186 (321)
Q Consensus 153 wD~~~~-~~i~~~~~~--~~~~~~wSpdG~~l~t~~s 186 (321)
|-+... ..+...+.+ ++.=..|.|+-+.++.+++
T Consensus 137 y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 137 YQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred EEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 765543 222223333 5666789999998888775
No 388
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.61 E-value=1.2 Score=46.98 Aligned_cols=81 Identities=16% Similarity=0.198 Sum_probs=58.4
Q ss_pred ccCCCeEEEEeCCCcee--EE-e-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-----CeeeE
Q 020756 102 GFMPASATIFNKKCRPI--LE-L-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-----CSVTS 172 (321)
Q Consensus 102 g~~~~~i~i~d~~~~~~--~~-~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-----~~~~~ 172 (321)
|...+.+-.+|..++.- +. . ..+++.+++|+-+|++++.|- .+|.|.+||+..++.++.+..+ .+..+
T Consensus 105 ~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~---~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v 181 (1206)
T KOG2079|consen 105 GTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGL---GDGHVTVWDMHRAKILKVITEHGAPVTGVIFV 181 (1206)
T ss_pred EcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceecccc---CCCcEEEEEccCCcceeeeeecCCccceEEEE
Confidence 45566788888876522 11 1 367899999999999988876 6799999999988776665543 45556
Q ss_pred EEccCCCEEEEEE
Q 020756 173 EWSPDGRYFMTAT 185 (321)
Q Consensus 173 ~wSpdG~~l~t~~ 185 (321)
-|..++..++++.
T Consensus 182 ~~t~~nS~llt~D 194 (1206)
T KOG2079|consen 182 GRTSQNSKLLTSD 194 (1206)
T ss_pred EEeCCCcEEEEcc
Confidence 7777777555544
No 389
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=91.32 E-value=14 Score=35.42 Aligned_cols=114 Identities=11% Similarity=0.038 Sum_probs=67.3
Q ss_pred EEEEEcCCCce-eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-----eeEEeC----CcCeeeEEEcC
Q 020756 64 LNYLTTDGTHE-GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-----PILELG----SGPYNTVRWNP 133 (321)
Q Consensus 64 l~~l~~~g~~~-~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-----~~~~~~----~~~~~~~~~sP 133 (321)
+|.-...|... ..+.......+.++.|.++|..+++. ..+.+..-+-.+. ...... ...+..+.|.+
T Consensus 261 ~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g---~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~ 337 (398)
T PLN00033 261 FYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT---RGGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRS 337 (398)
T ss_pred EEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe---CCceEEEecCCCCcccccceeecccCCCCcceEEEEEcC
Confidence 44444445432 45666667789999999999877662 3444433332332 122221 12367889999
Q ss_pred CCCeEEEEccCCCCCcEEEEECCCCeEEEeee-----CCCeeeEEEccCCCEEEEEE
Q 020756 134 KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR-----AECSVTSEWSPDGRYFMTAT 185 (321)
Q Consensus 134 dG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~-----~~~~~~~~wSpdG~~l~t~~ 185 (321)
++..++++ ..|.|... .+.++.-.... ..+.+.+.|.++++.++++.
T Consensus 338 d~~~~a~G----~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 338 KKEAWAAG----GSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN 389 (398)
T ss_pred CCcEEEEE----CCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEeC
Confidence 88877776 44655544 33443322221 12567889999888888876
No 390
>PRK13684 Ycf48-like protein; Provisional
Probab=90.90 E-value=9.5 Score=35.55 Aligned_cols=104 Identities=15% Similarity=0.140 Sum_probs=60.2
Q ss_pred eeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEE-EEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcE
Q 020756 75 GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASAT-IFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDM 150 (321)
Q Consensus 75 ~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~-i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i 150 (321)
..+.....+.++++.+.|++..+++ +. .+.+. .+|-.+...... ....++.+.+.|+|+.++++. .|.+
T Consensus 165 ~~~~~~~~g~~~~i~~~~~g~~v~~--g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~----~G~~ 237 (334)
T PRK13684 165 EALVEDAAGVVRNLRRSPDGKYVAV--SS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR----GGQI 237 (334)
T ss_pred eeCcCCCcceEEEEEECCCCeEEEE--eC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec----CCEE
Confidence 3343344678999999999876655 33 33332 223223333333 345678899999999877754 3555
Q ss_pred EEEECCCCeE---EEee---eCCCeeeEEEccCCCEEEEEE
Q 020756 151 AFWDYVDGKQ---LGTT---RAECSVTSEWSPDGRYFMTAT 185 (321)
Q Consensus 151 ~iwD~~~~~~---i~~~---~~~~~~~~~wSpdG~~l~t~~ 185 (321)
.+=..+.+.. +... ....++.+.+.|+++.++++.
T Consensus 238 ~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~ 278 (334)
T PRK13684 238 RFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGG 278 (334)
T ss_pred EEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcC
Confidence 4323344422 2211 112466788999988776655
No 391
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=90.84 E-value=13 Score=38.95 Aligned_cols=90 Identities=17% Similarity=0.240 Sum_probs=58.2
Q ss_pred CCCeEEEEECc-CCCEEEEEEccCCCeEEEEeCCC------ceeEE-------e-----CCcCeeeEEEcCCCCeEEEEc
Q 020756 82 EGPVHDVQWSY-SGSEFAVVYGFMPASATIFNKKC------RPILE-------L-----GSGPYNTVRWNPKGKFLCLAG 142 (321)
Q Consensus 82 ~~~v~~~~wsP-~g~~l~~~~g~~~~~i~i~d~~~------~~~~~-------~-----~~~~~~~~~~sPdG~~l~~~g 142 (321)
..+.-||+|+| +.++||++ +..|...|||+.. ..+.. + .......+.|.++-+.|+++.
T Consensus 145 g~~~aDv~FnP~~~~q~AiV--D~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~ 222 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIV--DEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN 222 (765)
T ss_pred CCccceEEeccCccceEEEE--eccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc
Confidence 34788999999 55689998 5678999999921 11111 1 112334688999988888884
Q ss_pred cCCCCCcEEEEECCCCeEEE-eeeC---CCeeeEEEccC
Q 020756 143 FGNLPGDMAFWDYVDGKQLG-TTRA---ECSVTSEWSPD 177 (321)
Q Consensus 143 ~~n~~g~i~iwD~~~~~~i~-~~~~---~~~~~~~wSpd 177 (321)
...+.++|+++..... .... ..+.++.=+|+
T Consensus 223 ----r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~ 257 (765)
T PF10214_consen 223 ----RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPD 257 (765)
T ss_pred ----CCceEEEECCCCCccchhccCCChhheeeEEecCC
Confidence 4679999998764322 1111 25555655655
No 392
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.78 E-value=0.03 Score=53.73 Aligned_cols=137 Identities=12% Similarity=0.258 Sum_probs=91.7
Q ss_pred ccceEEeCCCCCeeEEEE-EecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeE
Q 020756 30 STVQLNWNRGSTGLLAVA-QSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASA 108 (321)
Q Consensus 30 ~~~~~~Wsp~G~~l~~~~-~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i 108 (321)
......|-+.|..+++.+ .+. .+|| +...+....+...+...+++|.-+|..+++.... .+.+
T Consensus 36 ~pi~~~w~~e~~nlavaca~ti-----v~~Y----------D~agq~~le~n~tg~aldm~wDkegdvlavlAek-~~pi 99 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTI-----VIYY----------DKAGQVILELNPTGKALDMAWDKEGDVLAVLAEK-TGPI 99 (615)
T ss_pred ccceeeEecCCCceehhhhhhH-----HHhh----------hhhcceecccCCchhHhhhhhccccchhhhhhhc-CCCe
Confidence 456789999888877642 111 1111 1111233334455677789999999988887433 3579
Q ss_pred EEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEE
Q 020756 109 TIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMT 183 (321)
Q Consensus 109 ~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t 183 (321)
.+||+..+-...+ ++..-.-+.|++-+..++.+. ..|.+.|++..+-+.+.....| .+++++|.+.+.-+..
T Consensus 100 ylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~---~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 100 YLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGN---NAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred eechhhhhhHHHHhccCcchHHHHhhccCCccccccc---cccceEEEeccchhhhhhhcccccceeEEEecccceeeec
Confidence 9999965543333 233333489999999999886 8899999998766555444323 7899999999887665
Q ss_pred EE
Q 020756 184 AT 185 (321)
Q Consensus 184 ~~ 185 (321)
..
T Consensus 177 dc 178 (615)
T KOG2247|consen 177 DC 178 (615)
T ss_pred Cc
Confidence 54
No 393
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=90.53 E-value=11 Score=32.78 Aligned_cols=57 Identities=11% Similarity=0.182 Sum_probs=40.4
Q ss_pred CEEEEEEccCCCeEEEEeCC---CceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCC---cEEEE
Q 020756 95 SEFAVVYGFMPASATIFNKK---CRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPG---DMAFW 153 (321)
Q Consensus 95 ~~l~~~~g~~~~~i~i~d~~---~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g---~i~iw 153 (321)
+.|+++ ....+|.+|++. +..+.+| --+.+..+.|+..|.+|++.--.+... .+++|
T Consensus 29 d~Lfva--~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVA--ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEE--cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 444443 234589999985 4466677 357899999999999999987555555 55554
No 394
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=90.42 E-value=12 Score=33.21 Aligned_cols=106 Identities=14% Similarity=0.192 Sum_probs=65.4
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc-eeE---------------Ee-CCcCeeeEE--EcCCCC-eEEE
Q 020756 81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR-PIL---------------EL-GSGPYNTVR--WNPKGK-FLCL 140 (321)
Q Consensus 81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~-~~~---------------~~-~~~~~~~~~--~sPdG~-~l~~ 140 (321)
+..+|..+..-|+-+.|++.. ++.+.+|++..- ... .+ ....+..++ =.+.+. +|++
T Consensus 34 ~~~~I~ql~vl~~~~~llvLs---d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~v 110 (275)
T PF00780_consen 34 KLSSITQLSVLPELNLLLVLS---DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCV 110 (275)
T ss_pred ecceEEEEEEecccCEEEEEc---CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEE
Confidence 444599999999888777764 378999987321 000 12 223344443 113343 4444
Q ss_pred EccCCCCCcEEEEECCC----C-eEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756 141 AGFGNLPGDMAFWDYVD----G-KQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 141 ~g~~n~~g~i~iwD~~~----~-~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
+ ....|.+|.... . +.+..+.-+ .+..++|. +..|+.+. .+.+.+.|++
T Consensus 111 a----~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~-------~~~f~~idl~ 165 (275)
T PF00780_consen 111 A----VKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT-------SKGFYLIDLN 165 (275)
T ss_pred E----ECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe-------CCceEEEecC
Confidence 4 345788776543 2 345555544 67888998 67777777 6778888886
No 395
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=90.35 E-value=19 Score=37.57 Aligned_cols=135 Identities=20% Similarity=0.203 Sum_probs=68.6
Q ss_pred ceEEEEEcCCcCCCCceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC-CC
Q 020756 5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK-EG 83 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~-~~ 83 (321)
+.+++++.......-++....|.........-+||..++++.... ....-.+|++.-.++.+.... ......+ .+
T Consensus 73 ~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~d~~~~~~~~~~-~~~~rhs~~~~~~~~~~~~~~---~~~~~~~~~~ 148 (755)
T KOG2100|consen 73 GNIVVSNALYGLSSVPLTNSTFGRLRYSSDLISPDRKYILLGRNY-KKRFRHSYTAKYHLYDLNTGE---KLHPPEYEGS 148 (755)
T ss_pred CceEeecccCcccEEEecccchhhccccccccChhhhhheeccCc-ccccceeeEEEEEEEEcCCCC---cccCcccCCC
Confidence 455666666532122344444432221113567788887775321 122333555655555554444 1222223 34
Q ss_pred CeEEEEECcCCCEEEEEEccC-CC-------eE-EEEeCCCceeEEe-C--------CcCeeeEEEcCCCCeEEEEcc
Q 020756 84 PVHDVQWSYSGSEFAVVYGFM-PA-------SA-TIFNKKCRPILEL-G--------SGPYNTVRWNPKGKFLCLAGF 143 (321)
Q Consensus 84 ~v~~~~wsP~g~~l~~~~g~~-~~-------~i-~i~d~~~~~~~~~-~--------~~~~~~~~~sPdG~~l~~~g~ 143 (321)
.+..+.|+|.|+.++.++... .. .+ .+++-....++.. . -.....+.|+|+|.+++...+
T Consensus 149 ~~~~~~wsp~~~~l~yv~~~niy~~~~~~~~~~~~~~~~~~~~i~ng~~Dw~yeeEv~~~~~a~wwsp~g~~la~~~~ 226 (755)
T KOG2100|consen 149 KIQYASWSPLGNDLAYVLHNNIYYQSSEEDEDVRIVSNGGEDVIFNGKPDWIYEEEVLSSDSAIWWSPDGDRLAYASF 226 (755)
T ss_pred eeEEEEEcCCCCEEEEEEecccccccCcCCCceEEEecCCCceEEcCCCCceeehhhcccCccceeCCCCceeEEEEe
Confidence 568999999999988875421 00 11 1222111112221 1 123446789999999997754
No 396
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.82 E-value=3 Score=43.03 Aligned_cols=68 Identities=22% Similarity=0.364 Sum_probs=45.3
Q ss_pred CeeeEEEcCCCCeEEEEccCCCCCcEEEEECC----------CCe--EEE-e-------ee-C--CCeeeEEEccC---C
Q 020756 125 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV----------DGK--QLG-T-------TR-A--ECSVTSEWSPD---G 178 (321)
Q Consensus 125 ~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~----------~~~--~i~-~-------~~-~--~~~~~~~wSpd---G 178 (321)
.|..+..||+|++|++.| .. .|.|..+- .++ ..+ + +. . ..+..+.|+|. +
T Consensus 86 ~v~~i~~n~~g~~lal~G---~~-~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVG---PR-GVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred eEEEEEECCCCCEEEEEc---CC-cEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 577899999999999998 33 33333321 111 111 1 11 1 15667999996 5
Q ss_pred CEEEEEEcCCceeecCcEEEEeec
Q 020756 179 RYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 179 ~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
.+|+.=++ ||.+++||+.
T Consensus 162 ~~l~vLts------dn~lR~y~~~ 179 (717)
T PF10168_consen 162 SHLVVLTS------DNTLRLYDIS 179 (717)
T ss_pred CeEEEEec------CCEEEEEecC
Confidence 88887775 9999999984
No 397
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=89.57 E-value=3.5 Score=39.65 Aligned_cols=81 Identities=12% Similarity=0.142 Sum_probs=49.9
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe----CCcCeeeEEEcCC-----------------CCeEEE
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL----GSGPYNTVRWNPK-----------------GKFLCL 140 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~----~~~~~~~~~~sPd-----------------G~~l~~ 140 (321)
...+.++..+|+++..++. +.-|+|.|+|+....+..+ .+..+..+.-... ..+|++
T Consensus 307 ~R~~~~i~~sP~~~laA~t--DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvI 384 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVT--DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVI 384 (415)
T ss_pred CceEEEEEECCCCCEEEEE--cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEE
Confidence 3457889999998877774 4457999999865433322 1222221111111 123433
Q ss_pred EccCCCCCcEEEEECCCCeEEEeeeC
Q 020756 141 AGFGNLPGDMAFWDYVDGKQLGTTRA 166 (321)
Q Consensus 141 ~g~~n~~g~i~iwD~~~~~~i~~~~~ 166 (321)
-. -..|-|+||++++|.++..+.-
T Consensus 385 ya--prRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 385 YA--PRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred Ee--ccCCeEEEEecCCCCEEEEEEe
Confidence 22 2689999999999988887654
No 398
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=89.35 E-value=18 Score=33.59 Aligned_cols=100 Identities=14% Similarity=0.153 Sum_probs=50.3
Q ss_pred cceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceee------eecCCCCCeEEEEECcC---CCEEEEEE
Q 020756 31 TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGL------VPLRKEGPVHDVQWSYS---GSEFAVVY 101 (321)
Q Consensus 31 ~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~------v~l~~~~~v~~~~wsP~---g~~l~~~~ 101 (321)
-..|.|.|+|+.++.- +.|+ |+++..++..... +....+....+++++|+ ..+|.+.+
T Consensus 4 P~~~a~~pdG~l~v~e------~~G~-------i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~ 70 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAE------RSGR-------IWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYY 70 (331)
T ss_dssp EEEEEEETTSCEEEEE------TTTE-------EEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEE
T ss_pred ceEEEEeCCCcEEEEe------CCce-------EEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEE
Confidence 4578999998665431 2233 5566645543111 11224667899999994 34555554
Q ss_pred ccC-----CC--eEEEEeCCCc--------eeE-Ee-C----CcCeeeEEEcCCCCeEEEEcc
Q 020756 102 GFM-----PA--SATIFNKKCR--------PIL-EL-G----SGPYNTVRWNPKGKFLCLAGF 143 (321)
Q Consensus 102 g~~-----~~--~i~i~d~~~~--------~~~-~~-~----~~~~~~~~~sPdG~~l~~~g~ 143 (321)
... .. .|.-|.+... .+. .+ . ...-..+.|.|||.+.+..|.
T Consensus 71 t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~ 133 (331)
T PF07995_consen 71 TNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGD 133 (331)
T ss_dssp EEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-
T ss_pred EcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCC
Confidence 321 11 2333333111 111 11 1 234467999999977777664
No 399
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=89.25 E-value=2.4 Score=25.91 Aligned_cols=40 Identities=15% Similarity=0.138 Sum_probs=28.2
Q ss_pred CCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-CeeeEEE
Q 020756 133 PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEW 174 (321)
Q Consensus 133 PdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-~~~~~~w 174 (321)
|+|++|.++.. ..+.|.++|..+++.+..+.-. ....+.|
T Consensus 1 pd~~~lyv~~~--~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNS--GSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeC--CCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 78898888763 3589999999888877766543 3344444
No 400
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=89.20 E-value=12 Score=36.21 Aligned_cols=123 Identities=15% Similarity=0.179 Sum_probs=63.2
Q ss_pred ceEEEEEcCCcCCCCceeeeecccCc----cceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEc--CCC--ceee
Q 020756 5 ASVQIYACGKDLQSQPLARRSFFRCS----TVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTT--DGT--HEGL 76 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~~~~f~~~----~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~--~g~--~~~~ 76 (321)
.++.+|++.. ++.+....+.... .+.+.|+|+..+-.+.+. -..+||.+-. ++. .++.
T Consensus 222 ~~l~vWD~~~---r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a-----------Lss~i~~~~k~~~g~W~a~kV 287 (461)
T PF05694_consen 222 HSLHVWDWST---RKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA-----------LSSSIWRFYKDDDGEWAAEKV 287 (461)
T ss_dssp -EEEEEETTT---TEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE-------------EEEEEEEE-ETTEEEEEEE
T ss_pred CeEEEEECCC---CcEeeEEecCCCCCceEEEEecCCCCccceEEEEe-----------ccceEEEEEEcCCCCeeeeEE
Confidence 5789999999 8889888887543 345566777766555432 1222343322 221 1223
Q ss_pred eecCC------------------CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC--ceeE--Ee--C----------
Q 020756 77 VPLRK------------------EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC--RPIL--EL--G---------- 122 (321)
Q Consensus 77 v~l~~------------------~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~--~~~~--~~--~---------- 122 (321)
+.+.- ..-|+|+..|.|.++|.+. .-+.+.++.||+.. ++.. ++ +
T Consensus 288 i~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs-~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~ 366 (461)
T PF05694_consen 288 IDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVS-NWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPV 366 (461)
T ss_dssp EEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEE-ETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TT
T ss_pred EECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEE-cccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCcc
Confidence 33321 2457999999999988886 56788999999942 2222 21 1
Q ss_pred ------CcCeeeEEEcCCCCeEEEEc
Q 020756 123 ------SGPYNTVRWNPKGKFLCLAG 142 (321)
Q Consensus 123 ------~~~~~~~~~sPdG~~l~~~g 142 (321)
.+..+.+..|-||+.|.++.
T Consensus 367 v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 367 VKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp S------S----EEE-TTSSEEEEE-
T ss_pred ccccccCCCCCeEEEccCCeEEEEEe
Confidence 11235688888999887765
No 401
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=89.02 E-value=2.9 Score=43.63 Aligned_cols=87 Identities=8% Similarity=0.018 Sum_probs=54.6
Q ss_pred EEEEEEccCCCeEEEEeCCCceeEE--e-CCcCeeeEEEcCCCCeEEE-EccCC--CCCcEEEEECCCC-eEEEeeeC--
Q 020756 96 EFAVVYGFMPASATIFNKKCRPILE--L-GSGPYNTVRWNPKGKFLCL-AGFGN--LPGDMAFWDYVDG-KQLGTTRA-- 166 (321)
Q Consensus 96 ~l~~~~g~~~~~i~i~d~~~~~~~~--~-~~~~~~~~~~sPdG~~l~~-~g~~n--~~g~i~iwD~~~~-~~i~~~~~-- 166 (321)
.|+++. ...+.|.+-|..+..... + +..++.+.+|||||++|+. .+|.. ....|++-|+.+. ..+..+.-
T Consensus 320 kiAfv~-~~~~~L~~~D~dG~n~~~ve~~~~~~i~sP~~SPDG~~vAY~ts~e~~~g~s~vYv~~L~t~~~~~vkl~ve~ 398 (912)
T TIGR02171 320 KLAFRN-DVTGNLAYIDYTKGASRAVEIEDTISVYHPDISPDGKKVAFCTGIEGLPGKSSVYVRNLNASGSGLVKLPVEN 398 (912)
T ss_pred eEEEEE-cCCCeEEEEecCCCCceEEEecCCCceecCcCCCCCCEEEEEEeecCCCCCceEEEEehhccCCCceEeeccc
Confidence 455553 233588888887643332 4 6788999999999999999 67655 3456999998753 22222221
Q ss_pred CCeeeEEEccCCCEEEE
Q 020756 167 ECSVTSEWSPDGRYFMT 183 (321)
Q Consensus 167 ~~~~~~~wSpdG~~l~t 183 (321)
..|..-....+|...++
T Consensus 399 aaiprwrv~e~gdt~iv 415 (912)
T TIGR02171 399 AAIPRWRVLENGDTVIV 415 (912)
T ss_pred ccccceEecCCCCeEEE
Confidence 24444445566655544
No 402
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=88.93 E-value=1.5 Score=27.82 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=24.7
Q ss_pred CeeeEEEcCCCC---eEEEEccCCCCCcEEEEECCC
Q 020756 125 PYNTVRWNPKGK---FLCLAGFGNLPGDMAFWDYVD 157 (321)
Q Consensus 125 ~~~~~~~sPdG~---~l~~~g~~n~~g~i~iwD~~~ 157 (321)
.+.++.|||... +|+.+. ..|.|.|+|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E---~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAE---HQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEc---cCCeEEEEEccc
Confidence 567899998544 888887 779999999985
No 403
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.71 E-value=20 Score=36.79 Aligned_cols=93 Identities=10% Similarity=0.061 Sum_probs=59.0
Q ss_pred cCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeC--C-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEe
Q 020756 124 GPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--E-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFH 200 (321)
Q Consensus 124 ~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~--~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~ 200 (321)
..+.-+..||++++|++-. ..|.|.+-+.+..+++..+.. + ..-+++|.-+.. ...+ .++.+.+..
T Consensus 217 ~~~~ki~VS~n~~~laLyt---~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnda---Vvl~-----~e~~l~lvg 285 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYT---ETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGNDA---VVLS-----WEVNLMLVG 285 (829)
T ss_pred ceEEEEEEcCCcceEEEEe---cCCcEEEEecchhhhhhccCCCCCCchHhceeecCCc---eEEE-----EeeeEEEEc
Confidence 4566788999999999987 789999988877777776653 2 334688977652 1111 356666666
Q ss_pred ecCcee-EEeccCceEEEEEecCCCCCCCC
Q 020756 201 HNGSLF-FKKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 201 ~~g~~l-~~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
-.|..+ +-.....+ +.=-+|+-.+++.
T Consensus 286 p~gd~V~f~yd~t~~--l~~E~DGVRI~t~ 313 (829)
T KOG2280|consen 286 PPGDSVQFYYDETAI--LSAEVDGVRIITS 313 (829)
T ss_pred CCCCccccccCCCce--eeeccCeeEEecc
Confidence 566555 22222221 4444566667765
No 404
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.58 E-value=26 Score=34.28 Aligned_cols=102 Identities=12% Similarity=0.145 Sum_probs=54.1
Q ss_pred ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCcee-eeec------CCCCCeEEEEECcCC------CE
Q 020756 30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG-LVPL------RKEGPVHDVQWSYSG------SE 96 (321)
Q Consensus 30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~-~v~l------~~~~~v~~~~wsP~g------~~ 96 (321)
.-..|.|.|+|+.|+.- . ..| .|+.++..+.... ...+ .-++...+++++|+= .+
T Consensus 31 ~Pw~maflPDG~llVtE-R----~~G-------~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~ 98 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTE-R----ATG-------KILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPY 98 (454)
T ss_pred CceEEEEcCCCeEEEEE-e----cCC-------EEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcE
Confidence 45688999999655432 1 012 2555544332111 1111 136778999999873 35
Q ss_pred EEEEEcc--------CCCeEEEEeCCC--------ceeEE-e---CCcCeeeEEEcCCCCeEEEEcc
Q 020756 97 FAVVYGF--------MPASATIFNKKC--------RPILE-L---GSGPYNTVRWNPKGKFLCLAGF 143 (321)
Q Consensus 97 l~~~~g~--------~~~~i~i~d~~~--------~~~~~-~---~~~~~~~~~~sPdG~~l~~~g~ 143 (321)
|.+.|.. ....|.-|.+.. ..+.. + ....-..|.|.|||.+.++.|-
T Consensus 99 lYvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 99 VYISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred EEEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence 6665522 122444454421 11221 2 1223457899999997777663
No 405
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.58 E-value=0.071 Score=51.24 Aligned_cols=137 Identities=18% Similarity=0.238 Sum_probs=95.9
Q ss_pred EEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEee
Q 020756 86 HDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT 164 (321)
Q Consensus 86 ~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~ 164 (321)
....|-|.+..+++. +.+..+..||..++.+... ..+..-.++|.-+|..+++... ..+.+++||+.+.. ...+
T Consensus 38 i~~~w~~e~~nlava--ca~tiv~~YD~agq~~le~n~tg~aldm~wDkegdvlavlAe--k~~piylwd~n~ey-tqqL 112 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVA--CANTIVIYYDKAGQVILELNPTGKALDMAWDKEGDVLAVLAE--KTGPIYLWDVNSEY-TQQL 112 (615)
T ss_pred ceeeEecCCCceehh--hhhhHHHhhhhhcceecccCCchhHhhhhhccccchhhhhhh--cCCCeeechhhhhh-HHHH
Confidence 357899988887774 5556788899988877776 4566667889989987777553 45899999997542 1111
Q ss_pred eC---CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCc--eeEEe-ccCceEEEEEecCCCCCCCCcchh
Q 020756 165 RA---ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS--LFFKK-MFDKLFQAEWKPVSPDKFGDISEL 233 (321)
Q Consensus 165 ~~---~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~--~l~~~-~~~~~~~~~w~P~~~~~~~~~~~~ 233 (321)
+. +.-.-+.||+-+..++.+. ..+.+.|++-... ....+ |.....+++|.+.+-.+....+++
T Consensus 113 E~gg~~s~sll~wsKg~~el~ig~------~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~ 181 (615)
T KOG2247|consen 113 ESGGTSSKSLLAWSKGTPELVIGN------NAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNT 181 (615)
T ss_pred hccCcchHHHHhhccCCccccccc------cccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHH
Confidence 11 2222378999999999887 5888999886322 22334 778889999999776555554433
No 406
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=88.50 E-value=14 Score=32.74 Aligned_cols=131 Identities=11% Similarity=0.116 Sum_probs=73.9
Q ss_pred CCCeEEEEECcCCCEEEEEEccCC-------CeEEEEeCCCceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEE
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMP-------ASATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW 153 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~-------~~i~i~d~~~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw 153 (321)
+...+|..-+|+|++++-.-.+.+ +.++.|-.....-.-+ .-.--|.++|+-+.+.+..... ++-+|.-|
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDs--ln~~V~a~ 185 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDS--LNYEVDAY 185 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEcc--CceEEeee
Confidence 556778888999998653211111 2233333222211112 1234477999999998888763 45677667
Q ss_pred E--CCCC-----eEEEeeeC------CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeEEe--ccCceEEE
Q 020756 154 D--YVDG-----KQLGTTRA------ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFFKK--MFDKLFQA 217 (321)
Q Consensus 154 D--~~~~-----~~i~~~~~------~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~~~--~~~~~~~~ 217 (321)
| ..+| +.+..++. ...-.++...+|.+.++.-+ .+++.-.|. +|++|.+. ....+.++
T Consensus 186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n------g~~V~~~dp~tGK~L~eiklPt~qitsc 259 (310)
T KOG4499|consen 186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN------GGTVQKVDPTTGKILLEIKLPTPQITSC 259 (310)
T ss_pred ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec------CcEEEEECCCCCcEEEEEEcCCCceEEE
Confidence 7 4444 22222222 12222445667887777664 566666665 67777443 45577777
Q ss_pred EEe
Q 020756 218 EWK 220 (321)
Q Consensus 218 ~w~ 220 (321)
+|-
T Consensus 260 cFg 262 (310)
T KOG4499|consen 260 CFG 262 (310)
T ss_pred Eec
Confidence 774
No 407
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=87.90 E-value=9 Score=35.97 Aligned_cols=97 Identities=13% Similarity=0.197 Sum_probs=54.2
Q ss_pred CCEEEEEEccCCCeEEEEeC-CCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-Ce
Q 020756 94 GSEFAVVYGFMPASATIFNK-KCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CS 169 (321)
Q Consensus 94 g~~l~~~~g~~~~~i~i~d~-~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-~~ 169 (321)
+..+++ +..++.+..+|. .++.+-.+ +......+.. ++..|++++ .++.|+.+|..+|+.+-..... .+
T Consensus 65 ~~~v~v--~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~---~~g~l~ald~~tG~~~W~~~~~~~~ 137 (377)
T TIGR03300 65 GGKVYA--ADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGT---EKGEVIALDAEDGKELWRAKLSSEV 137 (377)
T ss_pred CCEEEE--ECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEc---CCCEEEEEECCCCcEeeeeccCcee
Confidence 455555 355678888886 45555443 2222222222 466777776 7799999999999876544332 11
Q ss_pred eeEEEcc--CCCEEEEEEcCCceeecCcEEEEee-cCcee
Q 020756 170 VTSEWSP--DGRYFMTATTAPRLQIDNGIKIFHH-NGSLF 206 (321)
Q Consensus 170 ~~~~wSp--dG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l 206 (321)
. -+| ++..++.++. ++.+..||. +|+.+
T Consensus 138 ~---~~p~v~~~~v~v~~~------~g~l~a~d~~tG~~~ 168 (377)
T TIGR03300 138 L---SPPLVANGLVVVRTN------DGRLTALDAATGERL 168 (377)
T ss_pred e---cCCEEECCEEEEECC------CCeEEEEEcCCCcee
Confidence 1 111 2334444442 666777776 45544
No 408
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=87.74 E-value=24 Score=34.14 Aligned_cols=128 Identities=14% Similarity=0.194 Sum_probs=60.7
Q ss_pred CCeEEEEECc-----------CCCEEEEEEccCCCeEEEEeCCCc----ee-EEeC---------CcCeeeEEEcCCCCe
Q 020756 83 GPVHDVQWSY-----------SGSEFAVVYGFMPASATIFNKKCR----PI-LELG---------SGPYNTVRWNPKGKF 137 (321)
Q Consensus 83 ~~v~~~~wsP-----------~g~~l~~~~g~~~~~i~i~d~~~~----~~-~~~~---------~~~~~~~~~sPdG~~ 137 (321)
+..|..-|+. +.++|++ -+-...+|.|+|+..+ .+ +.+. -..-.++.--|+|+.
T Consensus 65 DElHH~GWNaCSsc~~~~~~~~Rr~Li~-PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~i 143 (461)
T PF05694_consen 65 DELHHSGWNACSSCHYGDPSKERRYLIL-PGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRI 143 (461)
T ss_dssp --B---EES--GGSTT--TT--S-EEEE-EBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--E
T ss_pred CccccccCcccccccCCCCcccCCcEEe-eeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccE
Confidence 4677788861 3344444 3666779999999643 22 2221 122345666799998
Q ss_pred EEEEc---cCCCCCcEEEEECCCCeEEEeeeCC-----CeeeEEEccCCCEEEEEEc-CC-------------ceeecCc
Q 020756 138 LCLAG---FGNLPGDMAFWDYVDGKQLGTTRAE-----CSVTSEWSPDGRYFMTATT-AP-------------RLQIDNG 195 (321)
Q Consensus 138 l~~~g---~~n~~g~i~iwD~~~~~~i~~~~~~-----~~~~~~wSpdG~~l~t~~s-~~-------------rl~~d~~ 195 (321)
++++- .|+..|.+-++|-++.+.+...+.. ...++-|.|.-..++++.= .| ..+..+.
T Consensus 144 mIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~ 223 (461)
T PF05694_consen 144 MISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHS 223 (461)
T ss_dssp EEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--E
T ss_pred EEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCe
Confidence 88752 2345678999999988888777653 4566889998887777641 01 1235789
Q ss_pred EEEEeecCcee-EEecc
Q 020756 196 IKIFHHNGSLF-FKKMF 211 (321)
Q Consensus 196 v~iw~~~g~~l-~~~~~ 211 (321)
+.+||+..+.+ .....
T Consensus 224 l~vWD~~~r~~~Q~idL 240 (461)
T PF05694_consen 224 LHVWDWSTRKLLQTIDL 240 (461)
T ss_dssp EEEEETTTTEEEEEEES
T ss_pred EEEEECCCCcEeeEEec
Confidence 99999966544 33333
No 409
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=87.60 E-value=5 Score=37.70 Aligned_cols=67 Identities=9% Similarity=0.174 Sum_probs=40.5
Q ss_pred CCEEEEEEccCCCeEEEEeCC-CceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC
Q 020756 94 GSEFAVVYGFMPASATIFNKK-CRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE 167 (321)
Q Consensus 94 g~~l~~~~g~~~~~i~i~d~~-~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~ 167 (321)
+..+++. ..++.+..+|.. ++.+-.. .......... .|..|++++ .+|.|+++|..+++.+..++.+
T Consensus 279 ~~~vyv~--~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~---~~G~l~~~d~~tG~~~~~~~~~ 349 (377)
T TIGR03300 279 DNRLYVT--DADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGD---FEGYLHWLSREDGSFVARLKTD 349 (377)
T ss_pred CCEEEEE--CCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEe---CCCEEEEEECCCCCEEEEEEcC
Confidence 4455543 456778888874 3333222 1111222222 466777776 7899999999999888777643
No 410
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.10 E-value=12 Score=33.59 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=46.5
Q ss_pred CCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCCC--eeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756 134 KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC--SVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 134 dG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~--~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
-|.+++++. ..|.++|.+.++|+++-.+.... -.+..-.+||..|..++ .|++++..|+.
T Consensus 62 vgdfVV~GC---y~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgs------hd~~~yalD~~ 123 (354)
T KOG4649|consen 62 VGDFVVLGC---YSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGS------HDGNFYALDPK 123 (354)
T ss_pred ECCEEEEEE---ccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEec------CCCcEEEeccc
Confidence 588899998 78999999999998777665542 23356788999888888 48888877763
No 411
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=87.01 E-value=12 Score=38.82 Aligned_cols=70 Identities=23% Similarity=0.365 Sum_probs=46.5
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeC--C---------Cc-ee--EEe----------CCcCeeeEEEcCCC---
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNK--K---------CR-PI--LEL----------GSGPYNTVRWNPKG--- 135 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~--~---------~~-~~--~~~----------~~~~~~~~~~sPdG--- 135 (321)
-.|+.+..||+|++++++ |. ..+.|..+ + ++ .+ .++ ....+..+.|+|.+
T Consensus 85 f~v~~i~~n~~g~~lal~-G~--~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALV-GP--RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred eeEEEEEECCCCCEEEEE-cC--CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 468899999999999997 43 34444433 0 01 01 111 23456789999974
Q ss_pred CeEEEEccCCCCCcEEEEECCCC
Q 020756 136 KFLCLAGFGNLPGDMAFWDYVDG 158 (321)
Q Consensus 136 ~~l~~~g~~n~~g~i~iwD~~~~ 158 (321)
.+|++-. .|+.|++||+...
T Consensus 162 ~~l~vLt---sdn~lR~y~~~~~ 181 (717)
T PF10168_consen 162 SHLVVLT---SDNTLRLYDISDP 181 (717)
T ss_pred CeEEEEe---cCCEEEEEecCCC
Confidence 6777666 7899999998753
No 412
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.64 E-value=4.9 Score=33.61 Aligned_cols=24 Identities=21% Similarity=0.529 Sum_probs=18.3
Q ss_pred eeeEEEcCCCCeEEEEccCCCCCcEEEEE
Q 020756 126 YNTVRWNPKGKFLCLAGFGNLPGDMAFWD 154 (321)
Q Consensus 126 ~~~~~~sPdG~~l~~~g~~n~~g~i~iwD 154 (321)
.++++||.||++.+.++ ..|+|.|
T Consensus 7 ~~~l~WS~Dg~laV~t~-----~~v~IL~ 30 (173)
T PF12657_consen 7 PNALAWSEDGQLAVATG-----ESVHILD 30 (173)
T ss_pred CcCeeECCCCCEEEEcC-----CeEEEEe
Confidence 36899999998777765 5777773
No 413
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=86.00 E-value=12 Score=36.75 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=45.2
Q ss_pred CCCeEEEEeCCCceeEEeCCcC--eeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCCC-----eeeEEEcc
Q 020756 104 MPASATIFNKKCRPILELGSGP--YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC-----SVTSEWSP 176 (321)
Q Consensus 104 ~~~~i~i~d~~~~~~~~~~~~~--~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~-----~~~~~wSp 176 (321)
....+.++|..+..+..+.... ...+..-++|.+++..+ ..+..+|+ .|+.+....... -+.+.+-|
T Consensus 126 ~~~~~~~iD~~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~-----~~~~e~D~-~G~v~~~~~l~~~~~~~HHD~~~l~ 199 (477)
T PF05935_consen 126 SSSYTYLIDNNGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG-----NRLYEIDL-LGKVIWEYDLPGGYYDFHHDIDELP 199 (477)
T ss_dssp BEEEEEEEETTS-EEEEE-GGGT--SSEEE-TTS-EEEEEB-----TEEEEE-T-T--EEEEEE--TTEE-B-S-EEE-T
T ss_pred CCceEEEECCCccEEEEEccCccccceeeEcCCCCEEEecC-----CceEEEcC-CCCEEEeeecCCcccccccccEECC
Confidence 3457888899998777663222 22277889999998876 68888888 465555444432 35588899
Q ss_pred CCCEEEEEE
Q 020756 177 DGRYFMTAT 185 (321)
Q Consensus 177 dG~~l~t~~ 185 (321)
+|.+|+.+.
T Consensus 200 nGn~L~l~~ 208 (477)
T PF05935_consen 200 NGNLLILAS 208 (477)
T ss_dssp TS-EEEEEE
T ss_pred CCCEEEEEe
Confidence 999999888
No 414
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=85.79 E-value=34 Score=32.82 Aligned_cols=93 Identities=8% Similarity=0.112 Sum_probs=55.1
Q ss_pred CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe-----EEEeeeC----CCeeeEEEccCCCEEEEEEcCCceeec
Q 020756 123 SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK-----QLGTTRA----ECSVTSEWSPDGRYFMTATTAPRLQID 193 (321)
Q Consensus 123 ~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~-----~i~~~~~----~~~~~~~wSpdG~~l~t~~s~~rl~~d 193 (321)
...+..+.|.++|..++++. .|.|. +....++ ....... ..++.+.|.+|+..++++. .
T Consensus 280 ~~~l~~v~~~~dg~l~l~g~----~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~-------~ 347 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLTR----GGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGG-------S 347 (398)
T ss_pred ccceeeeeEcCCCCEEEEeC----CceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEEC-------C
Confidence 45677899999999888764 35553 3343442 2222221 1477889999988777766 4
Q ss_pred CcEEEEeecCceeEEe-----ccCceEEEEEecCCCCCC
Q 020756 194 NGIKIFHHNGSLFFKK-----MFDKLFQAEWKPVSPDKF 227 (321)
Q Consensus 194 ~~v~iw~~~g~~l~~~-----~~~~~~~~~w~P~~~~~~ 227 (321)
+.+.+..-.|+.-... ....+|.+.|.++....+
T Consensus 348 G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~ 386 (398)
T PLN00033 348 GILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFV 386 (398)
T ss_pred CcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEE
Confidence 4444443344432221 134789998877544333
No 415
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=85.79 E-value=34 Score=32.81 Aligned_cols=150 Identities=18% Similarity=0.198 Sum_probs=76.2
Q ss_pred ccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC---CCCeEEEEECcCCCEEEEEEccC--
Q 020756 30 STVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK---EGPVHDVQWSYSGSEFAVVYGFM-- 104 (321)
Q Consensus 30 ~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~---~~~v~~~~wsP~g~~l~~~~g~~-- 104 (321)
..+.|.-||..+-|++....-.+....-.|+. ||..++....-+.+.... ...-|.+.-.|.| +|.+ .|..
T Consensus 68 sn~sl~~nPekeELilfGGEf~ngqkT~vYnd--Ly~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~-~l~~-fGGEfa 143 (521)
T KOG1230|consen 68 SNPSLFANPEKEELILFGGEFYNGQKTHVYND--LYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSN-ILWL-FGGEFA 143 (521)
T ss_pred CCcceeeccCcceeEEecceeecceeEEEeee--eeEEeccccceeEeccCCCcCCCccceeEEeccC-eEEE-eccccC
Confidence 34577788888766655221112111112333 555555444333333221 1122333333444 2222 2321
Q ss_pred -C--------CeEEEEeCCCceeEEe--C--C---cCeeeEEEcCCCCeEEEEccCCCC------CcEEEEECCCCe--E
Q 020756 105 -P--------ASATIFNKKCRPILEL--G--S---GPYNTVRWNPKGKFLCLAGFGNLP------GDMAFWDYVDGK--Q 160 (321)
Q Consensus 105 -~--------~~i~i~d~~~~~~~~~--~--~---~~~~~~~~sPdG~~l~~~g~~n~~------g~i~iwD~~~~~--~ 160 (321)
| ..+.+||++.+....+ + . ....-++|- -++|+++||.... ++|+++|+++.+ .
T Consensus 144 SPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK--~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~K 221 (521)
T KOG1230|consen 144 SPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWK--RQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSK 221 (521)
T ss_pred CcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEee--eeEEEEcceecCCCceEEeeeeEEEeccceeeee
Confidence 1 2466778876655554 1 1 222346664 4789999996532 468888998764 2
Q ss_pred EEeee-CC---CeeeEEEccCCCEEEEEE
Q 020756 161 LGTTR-AE---CSVTSEWSPDGRYFMTAT 185 (321)
Q Consensus 161 i~~~~-~~---~~~~~~wSpdG~~l~t~~ 185 (321)
+..-. .+ .-.++..+|+|..++.++
T Consensus 222 lepsga~PtpRSGcq~~vtpqg~i~vyGG 250 (521)
T KOG1230|consen 222 LEPSGAGPTPRSGCQFSVTPQGGIVVYGG 250 (521)
T ss_pred ccCCCCCCCCCCcceEEecCCCcEEEEcc
Confidence 32211 12 334566778888888776
No 416
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=85.38 E-value=0.22 Score=49.38 Aligned_cols=134 Identities=15% Similarity=0.209 Sum_probs=82.0
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc--eeEEe---CCcCeeeEEEcCCCCeEEEEccCC--CCCcEEEEE
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR--PILEL---GSGPYNTVRWNPKGKFLCLAGFGN--LPGDMAFWD 154 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~--~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n--~~g~i~iwD 154 (321)
...+.+++|+-+.++=+...|..+|.|.+-.++.. .-.++ +..++++++|++-..-++.+|+.. .+..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34566777776555222222677788888776432 11222 567889999999665555555422 367899999
Q ss_pred CCCC--eE-----EEeeeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee--EEeccCceEEEEEec
Q 020756 155 YVDG--KQ-----LGTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF--FKKMFDKLFQAEWKP 221 (321)
Q Consensus 155 ~~~~--~~-----i~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l--~~~~~~~~~~~~w~P 221 (321)
+.++ .. +..-.......++|-.|.+++++|.+ ...++|+|+...+. ......-+..+...|
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~------sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp 205 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMT------SRSVHIFDLRQSLDSVSSVNTKYVQGITVDP 205 (783)
T ss_pred cccccCCCccccccccccccCccccccccCcchhhcccc------cchhhhhhhhhhhhhhhhhhhhhcccceecC
Confidence 9876 11 11111124557899999998888885 67899999854333 112222344455556
No 417
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=85.30 E-value=11 Score=36.27 Aligned_cols=47 Identities=13% Similarity=0.270 Sum_probs=38.0
Q ss_pred CeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCCCeeeEEE
Q 020756 125 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECSVTSEW 174 (321)
Q Consensus 125 ~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~~~~~~w 174 (321)
.+.++.-+|+|++.+++. .-|.|.++|+.++..+...++-.-.++.|
T Consensus 309 ~~~~i~~sP~~~laA~tD---slGRV~LiD~~~~~vvrmWKGYRdAqc~w 355 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTD---SLGRVLLIDVARGIVVRMWKGYRDAQCGW 355 (415)
T ss_pred eEEEEEECCCCCEEEEEc---CCCcEEEEECCCChhhhhhccCccceEEE
Confidence 456799999999999987 77999999999998888877764444555
No 418
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.02 E-value=16 Score=35.42 Aligned_cols=92 Identities=13% Similarity=0.218 Sum_probs=61.1
Q ss_pred CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe--EE----EeeeCCCeeeEEEccCCCEEEEEEcCCceeecCc
Q 020756 122 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK--QL----GTTRAECSVTSEWSPDGRYFMTATTAPRLQIDNG 195 (321)
Q Consensus 122 ~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~--~i----~~~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~ 195 (321)
..+++.++.||||.+.|++-- .+.+|.+.+....+ .+ +.....++..+.|+.. +-+|..+ +.+
T Consensus 65 d~G~I~SIkFSlDnkilAVQR---~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~-------~~G 133 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQR---TSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFIT-------DQG 133 (657)
T ss_pred CCCceeEEEeccCcceEEEEe---cCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEe-------cCC
Confidence 578999999999999999976 67899999884321 11 1122236888999987 6677777 678
Q ss_pred EEEEeecCce----eEEeccCceEEEEEecCCC
Q 020756 196 IKIFHHNGSL----FFKKMFDKLFQAEWKPVSP 224 (321)
Q Consensus 196 v~iw~~~g~~----l~~~~~~~~~~~~w~P~~~ 224 (321)
+-+|.+.-+. +.+.+.-.+.=+.|.|+-.
T Consensus 134 ~e~y~v~pekrslRlVks~~~nvnWy~yc~et~ 166 (657)
T KOG2377|consen 134 IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETA 166 (657)
T ss_pred eEEEEEchhhhhhhhhhhcccCccEEEEccccc
Confidence 8888763221 1222333455556666544
No 419
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=84.36 E-value=5.8 Score=37.33 Aligned_cols=139 Identities=17% Similarity=0.252 Sum_probs=77.2
Q ss_pred ceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCC----CeEEEEECcCCC------------
Q 020756 32 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEG----PVHDVQWSYSGS------------ 95 (321)
Q Consensus 32 ~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~----~v~~~~wsP~g~------------ 95 (321)
..+++...|.-|++. .-|+| |+.++..|+....+.-.-++ -.+++..+++|.
T Consensus 118 LGl~f~~~ggdL~Va---------DAYlG---L~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~ 185 (376)
T KOG1520|consen 118 LGIRFDKKGGDLYVA---------DAYLG---LLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDR 185 (376)
T ss_pred ceEEeccCCCeEEEE---------eccee---eEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccch
Confidence 467788777666554 23666 77777666543322211111 122333344332
Q ss_pred ---EEEEEEccCCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEe---eeC-
Q 020756 96 ---EFAVVYGFMPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGT---TRA- 166 (321)
Q Consensus 96 ---~l~~~~g~~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~---~~~- 166 (321)
.+++..+...|++.-||..++....+ +-...|-++.|||+.+++++-+.. ..|.-|-++ +....+ +..
T Consensus 186 rd~~~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~--~ri~rywi~-g~k~gt~EvFa~~ 262 (376)
T KOG1520|consen 186 RDFVFAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTT--ARIKRYWIK-GPKAGTSEVFAEG 262 (376)
T ss_pred hheEEeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeecc--ceeeeeEec-CCccCchhhHhhc
Confidence 23334455567888888877766666 456678899999999999986432 233333232 222211 111
Q ss_pred -C-CeeeEEEccCCCEEEEEE
Q 020756 167 -E-CSVTSEWSPDGRYFMTAT 185 (321)
Q Consensus 167 -~-~~~~~~wSpdG~~l~t~~ 185 (321)
+ ..-.+.-+.+|.|.+.-.
T Consensus 263 LPG~PDNIR~~~~G~fWVal~ 283 (376)
T KOG1520|consen 263 LPGYPDNIRRDSTGHFWVALH 283 (376)
T ss_pred CCCCCcceeECCCCCEEEEEe
Confidence 1 333467778998766554
No 420
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.35 E-value=6.6 Score=41.93 Aligned_cols=99 Identities=14% Similarity=0.186 Sum_probs=63.9
Q ss_pred CCCCeEEEEECcCCC-EEEEEEccCCCeEEEEeCC--CceeEEeC-CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756 81 KEGPVHDVQWSYSGS-EFAVVYGFMPASATIFNKK--CRPILELG-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 156 (321)
Q Consensus 81 ~~~~v~~~~wsP~g~-~l~~~~g~~~~~i~i~d~~--~~~~~~~~-~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~ 156 (321)
+-.-..++.|+|.=- .++++ ..+..|.++.+. ...+..+. .....+++|+|-|+.++++- ..|++.-|-.
T Consensus 154 k~vf~~~~~wnP~vp~n~av~--l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~---nnGt~vQy~P- 227 (1405)
T KOG3630|consen 154 KPVFQLKNVWNPLVPLNSAVD--LSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGR---NNGTEVQYEP- 227 (1405)
T ss_pred cccccccccccCCccchhhhh--ccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEec---CCCeEEEeec-
Confidence 344566899998533 23332 345667666553 22333442 44567899999999999987 6688887765
Q ss_pred CCeEEEeeeCC------CeeeEEEccCCCEEEEEE
Q 020756 157 DGKQLGTTRAE------CSVTSEWSPDGRYFMTAT 185 (321)
Q Consensus 157 ~~~~i~~~~~~------~~~~~~wSpdG~~l~t~~ 185 (321)
.++....+..+ .+.+++|--.-.|+++-.
T Consensus 228 ~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 228 SLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred ccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 34433333332 577899988888888654
No 421
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=84.05 E-value=24 Score=36.91 Aligned_cols=65 Identities=15% Similarity=0.204 Sum_probs=46.3
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCcee-EEe-C-CcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC
Q 020756 84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPI-LEL-G-SGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 155 (321)
Q Consensus 84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~-~~~-~-~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~ 155 (321)
...+++=+.+| +||+ |+..|.|+|||.-+..- ..| + ..+|..|..+-||++|+.++ +..|.|+|.
T Consensus 579 ~Fs~~aTt~~G-~iav--gs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc----~tyLlLi~t 646 (794)
T PF08553_consen 579 NFSCFATTEDG-YIAV--GSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC----KTYLLLIDT 646 (794)
T ss_pred CceEEEecCCc-eEEE--EeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee----cceEEEEEE
Confidence 44566666666 5666 68899999999744322 223 2 47899999999999998874 456777774
No 422
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=83.53 E-value=13 Score=36.54 Aligned_cols=58 Identities=10% Similarity=0.240 Sum_probs=43.2
Q ss_pred CCeEEEEccCCCCCcEEEEECCCCeEEEeeeC--CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756 135 GKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA--ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 135 G~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~--~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
..+|+.++ ..|.|++||.-.-.-.+.+.+ ..+..+..+.+|.||++.+ .+.+.+-|+.
T Consensus 573 sGyIa~as---~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-------k~yllL~d~~ 632 (776)
T COG5167 573 SGYIAAAS---RKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATC-------KNYLLLTDVP 632 (776)
T ss_pred CceEEEec---CCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEee-------cceEEEEecc
Confidence 34788887 789999999754433333333 2778899999999998877 7888888873
No 423
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=83.24 E-value=19 Score=27.87 Aligned_cols=60 Identities=10% Similarity=0.109 Sum_probs=34.4
Q ss_pred cCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEeCCcCeeeEEE
Q 020756 69 TDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRW 131 (321)
Q Consensus 69 ~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~~~~~~~~~~ 131 (321)
+....+....+...+.|..+.-...+ .|+. +...|+|-+|+.....++.-....+.++.+
T Consensus 29 vf~~~e~~~Ei~e~~~v~~L~~~~~~-~F~Y--~l~NGTVGvY~~~~RlWRiKSK~~~~~~~~ 88 (111)
T PF14783_consen 29 VFKGDEIVAEITETDKVTSLCSLGGG-RFAY--ALANGTVGVYDRSQRLWRIKSKNQVTSMAF 88 (111)
T ss_pred EEeCCcEEEEEecccceEEEEEcCCC-EEEE--EecCCEEEEEeCcceeeeeccCCCeEEEEE
Confidence 33333455555556677777766654 4554 466778888887555444444444554433
No 424
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=83.06 E-value=33 Score=30.42 Aligned_cols=138 Identities=14% Similarity=0.144 Sum_probs=72.6
Q ss_pred eEEEEEcCCcC-CC-CceeeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee-cCC-
Q 020756 6 SVQIYACGKDL-QS-QPLARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP-LRK- 81 (321)
Q Consensus 6 ~v~v~~~~~~~-~~-~~i~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~-l~~- 81 (321)
.|.||.+.... .. ..+.... .......+.|. ++.|++... ...++++........+. ...
T Consensus 115 ~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~-------------~~f~~idl~~~~~~~l~~~~~~ 178 (275)
T PF00780_consen 115 KILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS-------------KGFYLIDLNTGSPSELLDPSDS 178 (275)
T ss_pred EEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC-------------CceEEEecCCCCceEEeCccCC
Confidence 56777776521 01 1222222 24566788888 567766532 12345555432222221 111
Q ss_pred ----------CCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeE----EeCCcCeeeEEEcCCCCeEEEEccCCCC
Q 020756 82 ----------EGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL----ELGSGPYNTVRWNPKGKFLCLAGFGNLP 147 (321)
Q Consensus 82 ----------~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~----~~~~~~~~~~~~sPdG~~l~~~g~~n~~ 147 (321)
..++.-+..+. + +|++++. ....+.|..|.+.. .+...+.....+.| +|+..+ +
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~-~-e~Ll~~~---~~g~fv~~~G~~~r~~~i~W~~~p~~~~~~~p---yli~~~----~ 246 (275)
T PF00780_consen 179 SSSFKSRNSSSKPLGIFQLSD-N-EFLLCYD---NIGVFVNKNGEPSRKSTIQWSSAPQSVAYSSP---YLIAFS----S 246 (275)
T ss_pred cchhhhcccCCCceEEEEeCC-c-eEEEEec---ceEEEEcCCCCcCcccEEEcCCchhEEEEECC---EEEEEC----C
Confidence 22444444443 3 5666543 24455576665443 23344443344443 666654 3
Q ss_pred CcEEEEECCCCeEEEeeeCCCeee
Q 020756 148 GDMAFWDYVDGKQLGTTRAECSVT 171 (321)
Q Consensus 148 g~i~iwD~~~~~~i~~~~~~~~~~ 171 (321)
..|+||++.++++++.+..+.+..
T Consensus 247 ~~iEV~~~~~~~lvQ~i~~~~~~~ 270 (275)
T PF00780_consen 247 NSIEVRSLETGELVQTIPLPNIRL 270 (275)
T ss_pred CEEEEEECcCCcEEEEEECCCEEE
Confidence 569999999999999988765543
No 425
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=82.21 E-value=11 Score=27.97 Aligned_cols=40 Identities=18% Similarity=0.144 Sum_probs=30.1
Q ss_pred CCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEcc
Q 020756 104 MPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGF 143 (321)
Q Consensus 104 ~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~ 143 (321)
..|++.-||..++....+ +-..-|-++.+||+++|+++-.
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et 76 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAET 76 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEG
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEec
Confidence 346788899988877666 4567899999999999999863
No 426
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=81.80 E-value=55 Score=32.15 Aligned_cols=115 Identities=12% Similarity=0.015 Sum_probs=54.6
Q ss_pred EEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCC--CCCeEEEEECcCCCEEEEEEc-------c-
Q 020756 34 LNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRK--EGPVHDVQWSYSGSEFAVVYG-------F- 103 (321)
Q Consensus 34 ~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~--~~~v~~~~wsP~g~~l~~~~g-------~- 103 (321)
+...++|..++.. ...++.++..|.......+.. ....|++.+-|+|+.|+++.. .
T Consensus 153 ~~~l~nG~ll~~~--------------~~~~~e~D~~G~v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~~~~~~~ 218 (477)
T PF05935_consen 153 FKQLPNGNLLIGS--------------GNRLYEIDLLGKVIWEYDLPGGYYDFHHDIDELPNGNLLILASETKYVDEDKD 218 (477)
T ss_dssp EEE-TTS-EEEEE--------------BTEEEEE-TT--EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTEE-TS-E
T ss_pred eeEcCCCCEEEec--------------CCceEEEcCCCCEEEeeecCCcccccccccEECCCCCEEEEEeecccccCCCC
Confidence 5666777777553 134677777776444444443 234789999999999888751 1
Q ss_pred ----CC---------CeEEEEeCCC--ceeEE-------e----------CCcCeeeEEEcCCCCeEEEEccCCCCCcEE
Q 020756 104 ----MP---------ASATIFNKKC--RPILE-------L----------GSGPYNTVRWNPKGKFLCLAGFGNLPGDMA 151 (321)
Q Consensus 104 ----~~---------~~i~i~d~~~--~~~~~-------~----------~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~ 151 (321)
.| ..+..||+.. .+... + .-.++|++.|.|....|++++. ....|.
T Consensus 219 ~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR--~~s~V~ 296 (477)
T PF05935_consen 219 VDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSR--HQSAVI 296 (477)
T ss_dssp E---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEET--TT-EEE
T ss_pred ccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcC--cceEEE
Confidence 11 1233444311 01111 0 0136899999995555555551 234788
Q ss_pred EEECCCCeEEEee
Q 020756 152 FWDYVDGKQLGTT 164 (321)
Q Consensus 152 iwD~~~~~~i~~~ 164 (321)
..|..+++..-.+
T Consensus 297 ~Id~~t~~i~Wil 309 (477)
T PF05935_consen 297 KIDYRTGKIKWIL 309 (477)
T ss_dssp EEE-TTS-EEEEE
T ss_pred EEECCCCcEEEEe
Confidence 8887777655433
No 427
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=81.01 E-value=34 Score=29.15 Aligned_cols=84 Identities=17% Similarity=0.251 Sum_probs=56.9
Q ss_pred CCeEEEEE--CcCCCEEEEEEccCC-------CeEEEEeCCCceeEEe--CC----cCeeeEEEcCCCCeEEEEccC--C
Q 020756 83 GPVHDVQW--SYSGSEFAVVYGFMP-------ASATIFNKKCRPILEL--GS----GPYNTVRWNPKGKFLCLAGFG--N 145 (321)
Q Consensus 83 ~~v~~~~w--sP~g~~l~~~~g~~~-------~~i~i~d~~~~~~~~~--~~----~~~~~~~~sPdG~~l~~~g~~--n 145 (321)
.+-..-.| |-+|.+-|++.|-.+ |.|+|+|+.......+ +. ..-..+.|--|..++++.|+. .
T Consensus 56 ~~~f~t~wk~s~~~~~saciegkg~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK~i~WiDD~~L~vIIG~a~GT 135 (200)
T PF15525_consen 56 EPKFNTKWKNSENGKYSACIEGKGPEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPKYIEWIDDNNLAVIIGYAHGT 135 (200)
T ss_pred ccccccccccccCCceeEEEEcCCCccccccceeEEEEecCCCceEEEEecCcccccCCceeEEecCCcEEEEEccccce
Confidence 34455667 456888888766432 5899999876655444 21 112368899999999988753 2
Q ss_pred --CCCcEEEEECCCCeEEEeeeC
Q 020756 146 --LPGDMAFWDYVDGKQLGTTRA 166 (321)
Q Consensus 146 --~~g~i~iwD~~~~~~i~~~~~ 166 (321)
..|.|+++++.+++.......
T Consensus 136 vS~GGnLy~~nl~tg~~~~ly~~ 158 (200)
T PF15525_consen 136 VSKGGNLYKYNLNTGNLTELYEW 158 (200)
T ss_pred EccCCeEEEEEccCCceeEeeec
Confidence 468999999999865554443
No 428
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=80.63 E-value=47 Score=30.52 Aligned_cols=68 Identities=19% Similarity=0.289 Sum_probs=47.9
Q ss_pred CeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-------CeeeEEEccCCCEEEEEEcCCceeecCcEE
Q 020756 125 PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-------CSVTSEWSPDGRYFMTATTAPRLQIDNGIK 197 (321)
Q Consensus 125 ~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~ 197 (321)
++|++...++|.+|+++- .-..|++.|..+++.+=.+.+. ....++|-.|=+++-... .++.|.
T Consensus 145 HiNsV~~~~~G~yLiS~R---~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~------~~~~Is 215 (299)
T PF14269_consen 145 HINSVDKDDDGDYLISSR---NTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESN------DDGTIS 215 (299)
T ss_pred EeeeeeecCCccEEEEec---ccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCC------CCCEEE
Confidence 468888889999998876 4568999999899877666554 223366766666654443 266777
Q ss_pred EEee
Q 020756 198 IFHH 201 (321)
Q Consensus 198 iw~~ 201 (321)
|+|-
T Consensus 216 lFDN 219 (299)
T PF14269_consen 216 LFDN 219 (299)
T ss_pred EEcC
Confidence 7775
No 429
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.11 E-value=7.5 Score=41.25 Aligned_cols=60 Identities=18% Similarity=0.279 Sum_probs=42.5
Q ss_pred CCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCC-ceeEEe--CCcC---eeeEEEcCCCCeEEEEc
Q 020756 81 KEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKC-RPILEL--GSGP---YNTVRWNPKGKFLCLAG 142 (321)
Q Consensus 81 ~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~-~~~~~~--~~~~---~~~~~~sPdG~~l~~~g 142 (321)
-.++|.+++|+-+|+.++. |..+|.|.+||... +.++.+ +..+ +-.+.|--++..++++.
T Consensus 129 v~~~Vtsvafn~dg~~l~~--G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D 194 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLA--GLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSD 194 (1206)
T ss_pred cCCcceeeEecCCCceecc--ccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEcc
Confidence 3589999999999998887 67788999999965 444444 3333 34455666666566654
No 430
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=80.10 E-value=7.1 Score=24.76 Aligned_cols=31 Identities=16% Similarity=0.151 Sum_probs=22.7
Q ss_pred CCeEEEEECcCCC---EEEEEEccCCCeEEEEeCCC
Q 020756 83 GPVHDVQWSYSGS---EFAVVYGFMPASATIFNKKC 115 (321)
Q Consensus 83 ~~v~~~~wsP~g~---~l~~~~g~~~~~i~i~d~~~ 115 (321)
|.|.++.|||... .|+.. ..-+.+.|+|++.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~--E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWA--EHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEE--ccCCeEEEEEccc
Confidence 5788999998544 66664 3346999999974
No 431
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=80.09 E-value=50 Score=30.57 Aligned_cols=116 Identities=17% Similarity=0.173 Sum_probs=68.0
Q ss_pred EEEEECcCCCEEEEEEcc----CCCeEEEEeCCCceeEEe-----------------CCcCeeeEEEcCCCCeEEEEccC
Q 020756 86 HDVQWSYSGSEFAVVYGF----MPASATIFNKKCRPILEL-----------------GSGPYNTVRWNPKGKFLCLAGFG 144 (321)
Q Consensus 86 ~~~~wsP~g~~l~~~~g~----~~~~i~i~d~~~~~~~~~-----------------~~~~~~~~~~sPdG~~l~~~g~~ 144 (321)
-++++.++|..++...+. .+..|..|+..+..+..+ .+.....++++|||+.|+++...
T Consensus 88 Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~ 167 (326)
T PF13449_consen 88 EGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMES 167 (326)
T ss_pred hHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECc
Confidence 367887777766664222 015788888776543332 23345689999999966665432
Q ss_pred C--CCC-----------cEEEEECCC-Ce----EEEeee-------CCCeeeEEEccCCCEEEEEEcCCceeecCcEEEE
Q 020756 145 N--LPG-----------DMAFWDYVD-GK----QLGTTR-------AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIF 199 (321)
Q Consensus 145 n--~~g-----------~i~iwD~~~-~~----~i~~~~-------~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw 199 (321)
. .++ .|..||..+ +. -...+. ...++.+.+-+|+++|+.-...... ..+.++|+
T Consensus 168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~-~~~~~ri~ 246 (326)
T PF13449_consen 168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPG-TGNYKRIY 246 (326)
T ss_pred cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCC-ccceEEEE
Confidence 2 121 244566654 21 222232 2467889999999988876642111 24566776
Q ss_pred eec
Q 020756 200 HHN 202 (321)
Q Consensus 200 ~~~ 202 (321)
.++
T Consensus 247 ~v~ 249 (326)
T PF13449_consen 247 RVD 249 (326)
T ss_pred EEE
Confidence 653
No 432
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=79.34 E-value=8.7 Score=33.69 Aligned_cols=63 Identities=14% Similarity=0.173 Sum_probs=36.0
Q ss_pred ccCCCeEEEEeCCCc-eeE---EeCCcCeee-EEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC
Q 020756 102 GFMPASATIFNKKCR-PIL---ELGSGPYNT-VRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE 167 (321)
Q Consensus 102 g~~~~~i~i~d~~~~-~~~---~~~~~~~~~-~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~ 167 (321)
|..++.+++|..... ... .+....+-+ |.---++.+.++++ .+|.|+.|+..-++.+....+|
T Consensus 76 G~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~---~dg~ir~~n~~p~k~~g~~g~h 143 (238)
T KOG2444|consen 76 GTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGA---QDGRIRACNIKPNKVLGYVGQH 143 (238)
T ss_pred ecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEec---cCCceeeeccccCceeeeeccc
Confidence 677888888866421 111 112222222 21122344556666 7899999999888777665554
No 433
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=79.34 E-value=50 Score=30.10 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=70.4
Q ss_pred EEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe------CCcCeeeEEEcCCCCe
Q 020756 64 LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL------GSGPYNTVRWNPKGKF 137 (321)
Q Consensus 64 l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~------~~~~~~~~~~sPdG~~ 137 (321)
+-.++-..+...+++|.....-+.+...|||..-++- ...-|.-+|-++-.+.+| .....++..|.|.|++
T Consensus 85 iGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd---~~~aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~l 161 (353)
T COG4257 85 IGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITD---TGLAIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNL 161 (353)
T ss_pred ceecCCCCCceEEEecCCCCCCceEEECCCCCeeEec---CcceeEEecCcccceEEeecccccCCCcccceeeCCCccE
Confidence 4455555555667777777777889999999876662 111344556655555555 3567889999999998
Q ss_pred EEEEccCC---C---CCcEEEEECCCCeEEEeeeCCCeeeEEEccCCCEEEEEE
Q 020756 138 LCLAGFGN---L---PGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTAT 185 (321)
Q Consensus 138 l~~~g~~n---~---~g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~t~~ 185 (321)
-+++..|- + .+.|++|+.-. +.....++-.|||+...+.-
T Consensus 162 WFt~q~G~yGrLdPa~~~i~vfpaPq--------G~gpyGi~atpdGsvwyasl 207 (353)
T COG4257 162 WFTGQIGAYGRLDPARNVISVFPAPQ--------GGGPYGICATPDGSVWYASL 207 (353)
T ss_pred EEeeccccceecCcccCceeeeccCC--------CCCCcceEECCCCcEEEEec
Confidence 88764321 1 23455554421 23556678888888766644
No 434
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=78.98 E-value=52 Score=30.12 Aligned_cols=67 Identities=7% Similarity=0.063 Sum_probs=40.5
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEE--eCCCceeEEe----CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIF--NKKCRPILEL----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 156 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~--d~~~~~~~~~----~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~ 156 (321)
-.+.++... ++++++ |+.-..+.++ +.....+..+ ....+.++.+-++++.++.+. .+|+|.++...
T Consensus 130 ~~i~sl~~~--~~~I~v--gD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D---~~gnl~~l~~~ 202 (321)
T PF03178_consen 130 FYITSLSVF--KNYILV--GDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD---KDGNLFVLRYN 202 (321)
T ss_dssp SSEEEEEEE--TTEEEE--EESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE---TTSEEEEEEE-
T ss_pred EEEEEEecc--ccEEEE--EEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc---CCCeEEEEEEC
Confidence 355555554 556666 4555556665 5444434333 344567788887778777777 88999998765
No 435
>PF15359 CDV3: Carnitine deficiency-associated protein 3
Probab=78.57 E-value=2.1 Score=34.18 Aligned_cols=16 Identities=44% Similarity=0.831 Sum_probs=12.9
Q ss_pred CCCCCccCCCCCCChh
Q 020756 264 ATKPAAYRPPHAKQAA 279 (321)
Q Consensus 264 ~~~~~~y~pp~~r~~~ 279 (321)
++..++||||++|++.
T Consensus 83 ~~~~gvY~PP~~R~~~ 98 (129)
T PF15359_consen 83 ATTSGVYRPPAARNTT 98 (129)
T ss_pred CCCCceecCccccccc
Confidence 4455699999999975
No 436
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=78.57 E-value=55 Score=30.15 Aligned_cols=133 Identities=8% Similarity=0.084 Sum_probs=65.1
Q ss_pred ceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCC-ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEE
Q 020756 32 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGT-HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATI 110 (321)
Q Consensus 32 ~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~-~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i 110 (321)
..+.-+++|+++++.. . | ++|.-...|. .-..........|..+.|+|++...++. ..+.+.+
T Consensus 148 ~~~~r~~dG~~vavs~------~-----G--~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~---~Gg~~~~ 211 (302)
T PF14870_consen 148 NDITRSSDGRYVAVSS------R-----G--NFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA---RGGQIQF 211 (302)
T ss_dssp EEEEE-TTS-EEEEET------T-----S--SEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE---TTTEEEE
T ss_pred EeEEECCCCcEEEEEC------c-----c--cEEEEecCCCccceEEccCccceehhceecCCCCEEEEe---CCcEEEE
Confidence 3444567777776641 1 2 2333333342 2334444456889999999998876663 4567777
Q ss_pred EeC--CCceeEE----e--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCe---EEEeee--CCCeeeEEEccC
Q 020756 111 FNK--KCRPILE----L--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGK---QLGTTR--AECSVTSEWSPD 177 (321)
Q Consensus 111 ~d~--~~~~~~~----~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~---~i~~~~--~~~~~~~~wSpd 177 (321)
=+. ..+.... + ..-.+-.++|.|++...++++ .|.| +...+.|+ ...... ..+.+.+.|.++
T Consensus 212 s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg----~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~ 286 (302)
T PF14870_consen 212 SDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG----SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNP 286 (302)
T ss_dssp EE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES----TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEET
T ss_pred ccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC----CccE-EEeCCCCccceECccccCCCCceEEEEEcCC
Confidence 662 2222221 1 122356789999988888876 2334 34455553 332221 126677888777
Q ss_pred CCEEEEEE
Q 020756 178 GRYFMTAT 185 (321)
Q Consensus 178 G~~l~t~~ 185 (321)
.+-++.+.
T Consensus 287 ~~gf~lG~ 294 (302)
T PF14870_consen 287 DKGFVLGQ 294 (302)
T ss_dssp TEEEEE-S
T ss_pred CceEEECC
Confidence 77777776
No 437
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.96 E-value=11 Score=37.23 Aligned_cols=69 Identities=28% Similarity=0.483 Sum_probs=43.5
Q ss_pred CeeeEEEcCCCCeEEEEccCCCCCcEE--E---EEC----CCCeEE--E-e-------ee--CC-CeeeEEEccCC---C
Q 020756 125 PYNTVRWNPKGKFLCLAGFGNLPGDMA--F---WDY----VDGKQL--G-T-------TR--AE-CSVTSEWSPDG---R 179 (321)
Q Consensus 125 ~~~~~~~sPdG~~l~~~g~~n~~g~i~--i---wD~----~~~~~i--~-~-------~~--~~-~~~~~~wSpdG---~ 179 (321)
.|..+..||.|+.++++| .+|-+. + |-. ++++.+ + + +. .+ .+.+++|+|+. .
T Consensus 105 eV~~vl~s~~GS~VaL~G---~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~ 181 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIG---IKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDP 181 (741)
T ss_pred EEEEEEecCCCceEEEec---CCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCc
Confidence 456788999999999999 666433 3 322 223211 1 0 11 11 44568999975 5
Q ss_pred EEEEEEcCCceeecCcEEEEeec
Q 020756 180 YFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 180 ~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
+|+.-++ ||.|+||+++
T Consensus 182 hL~iL~s------dnviRiy~lS 198 (741)
T KOG4460|consen 182 HLVLLTS------DNVIRIYSLS 198 (741)
T ss_pred eEEEEec------CcEEEEEecC
Confidence 5555554 9999999985
No 438
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=77.51 E-value=60 Score=30.03 Aligned_cols=98 Identities=17% Similarity=0.166 Sum_probs=60.8
Q ss_pred eeEEEcCCCCeEEEEccCCCC------CcEEEEECCCCeEEEeeeCC-----------------CeeeEEEccCCCEEEE
Q 020756 127 NTVRWNPKGKFLCLAGFGNLP------GDMAFWDYVDGKQLGTTRAE-----------------CSVTSEWSPDGRYFMT 183 (321)
Q Consensus 127 ~~~~~sPdG~~l~~~g~~n~~------g~i~iwD~~~~~~i~~~~~~-----------------~~~~~~wSpdG~~l~t 183 (321)
..+++.++|.++++.- .. ..|..+|.+ |+.+..+.-+ ..=.++++|||+.|.+
T Consensus 88 Egi~~~~~g~~~is~E---~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 88 EGIAVPPDGSFWISSE---GGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred hHeEEecCCCEEEEeC---CccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 3688888888888875 44 788888876 6554443211 1224899999997777
Q ss_pred EEcCCceeecC---------cEEEEeec----Cce----eEEec-------cCceEEEEEecCCCCCCCC
Q 020756 184 ATTAPRLQIDN---------GIKIFHHN----GSL----FFKKM-------FDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 184 ~~s~~rl~~d~---------~v~iw~~~----g~~----l~~~~-------~~~~~~~~w~P~~~~~~~~ 229 (321)
+.-.+... |. .++|+.++ |+. .|... ...+.++.+-|+...++-+
T Consensus 164 ~~E~~l~~-d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 164 AMESPLKQ-DGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred EECccccC-CCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 76554221 21 26777664 211 23333 2467788888887755544
No 439
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=77.46 E-value=18 Score=30.22 Aligned_cols=30 Identities=17% Similarity=0.464 Sum_probs=21.0
Q ss_pred cCeeeEEEcCCC-----Ce-EEEEccCCCCCcEEEEECC
Q 020756 124 GPYNTVRWNPKG-----KF-LCLAGFGNLPGDMAFWDYV 156 (321)
Q Consensus 124 ~~~~~~~~sPdG-----~~-l~~~g~~n~~g~i~iwD~~ 156 (321)
..+..++|||-| +. |++.. .++.|.||...
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLT---s~~~l~l~~~~ 121 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLT---SNGRLSLYGPP 121 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEc---CCCeEEEEecC
Confidence 478899999954 43 34444 67889998764
No 440
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.65 E-value=35 Score=30.78 Aligned_cols=87 Identities=14% Similarity=0.142 Sum_probs=55.2
Q ss_pred CCEEEEEEccCCCeEEEEeCCCc-eeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCCCe-
Q 020756 94 GSEFAVVYGFMPASATIFNKKCR-PILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAECS- 169 (321)
Q Consensus 94 g~~l~~~~g~~~~~i~i~d~~~~-~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~~- 169 (321)
|+++++ |.-.+.+++.+.++. ++..| ...--......++|..|..++ .|++.+..|..+..++.+.+....
T Consensus 63 gdfVV~--GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgs---hd~~~yalD~~~~~cVykskcgG~~ 137 (354)
T KOG4649|consen 63 GDFVVL--GCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGS---HDGNFYALDPKTYGCVYKSKCGGGT 137 (354)
T ss_pred CCEEEE--EEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEec---CCCcEEEecccccceEEecccCCce
Confidence 444333 566678888888544 55555 222222345677899998888 889999999999988887665421
Q ss_pred -eeEEEcc-CCCEEEEEE
Q 020756 170 -VTSEWSP-DGRYFMTAT 185 (321)
Q Consensus 170 -~~~~wSp-dG~~l~t~~ 185 (321)
......| +|.++++.+
T Consensus 138 f~sP~i~~g~~sly~a~t 155 (354)
T KOG4649|consen 138 FVSPVIAPGDGSLYAAIT 155 (354)
T ss_pred eccceecCCCceEEEEec
Confidence 2234555 455444333
No 441
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=76.39 E-value=80 Score=30.89 Aligned_cols=101 Identities=11% Similarity=0.158 Sum_probs=57.3
Q ss_pred CeEEEEECcCCCEEEEEEccCCCeEEEEeCCCc---eeEEe-------CCcCeeeEEEcCCC------CeEEEE-ccCC-
Q 020756 84 PVHDVQWSYSGSEFAVVYGFMPASATIFNKKCR---PILEL-------GSGPYNTVRWNPKG------KFLCLA-GFGN- 145 (321)
Q Consensus 84 ~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~---~~~~~-------~~~~~~~~~~sPdG------~~l~~~-g~~n- 145 (321)
.-.+++|.|||+.|++. ...++|.+++..+. .+..+ +......|+++|+- ++|.++ +...
T Consensus 31 ~Pw~maflPDG~llVtE--R~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTE--RATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CceEEEEcCCCeEEEEE--ecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 44689999999877763 22478888875322 22211 34566789999974 234333 1110
Q ss_pred -----CCCcEEEEECCC-------Ce-EEEeee---CCCeeeEEEccCCCEEEEEEc
Q 020756 146 -----LPGDMAFWDYVD-------GK-QLGTTR---AECSVTSEWSPDGRYFMTATT 186 (321)
Q Consensus 146 -----~~g~i~iwD~~~-------~~-~i~~~~---~~~~~~~~wSpdG~~l~t~~s 186 (321)
....|.-|.+.. .+ .+..+. .|....+.|.|||.++++.+.
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD 165 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGE 165 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECC
Confidence 123455555431 11 122221 245667999999998776664
No 442
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=76.06 E-value=45 Score=33.24 Aligned_cols=57 Identities=19% Similarity=0.286 Sum_probs=33.7
Q ss_pred EEEcCCCCeEEEEccCCC---------CCcEE-----------EEECCCCeEEEeeeCC---CeeeEEEccCCCEEEEEE
Q 020756 129 VRWNPKGKFLCLAGFGNL---------PGDMA-----------FWDYVDGKQLGTTRAE---CSVTSEWSPDGRYFMTAT 185 (321)
Q Consensus 129 ~~~sPdG~~l~~~g~~n~---------~g~i~-----------iwD~~~~~~i~~~~~~---~~~~~~wSpdG~~l~t~~ 185 (321)
|.|+|+|++++...-++. +|.++ ..|...++....+..+ +++.++|+|||+.|....
T Consensus 441 L~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~~~~~~~~~g~~~rf~~~P~gaE~tG~~fspDg~tlFvni 520 (524)
T PF05787_consen 441 LAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNNVWAYDPDTGELKRFLVGPNGAEITGPCFSPDGRTLFVNI 520 (524)
T ss_pred eEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccceeeeccccccceeeeccCCCCcccccceECCCCCEEEEEE
Confidence 789999997777543221 12222 1223333333333332 788899999999987754
No 443
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.98 E-value=19 Score=37.01 Aligned_cols=93 Identities=15% Similarity=0.268 Sum_probs=61.2
Q ss_pred EEECcCCCEEEEEEcc--------CCCeEEEEeCCCceeEEe--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756 88 VQWSYSGSEFAVVYGF--------MPASATIFNKKCRPILEL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 157 (321)
Q Consensus 88 ~~wsP~g~~l~~~~g~--------~~~~i~i~d~~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~ 157 (321)
++-.|.|.-||+.... --..|.||+..|..+..+ .++.+-.+.||-+..+|++. .+|.+.+|++-
T Consensus 38 fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~sG~lL~~~~w~~~~lI~mgWs~~eeLI~v~----k~g~v~Vy~~~- 112 (829)
T KOG2280|consen 38 FACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNISGQLLGRILWKHGELIGMGWSDDEELICVQ----KDGTVHVYGLL- 112 (829)
T ss_pred EEecccCCceEEEecccccccccccceeEEEEeccccchHHHHhcCCCeeeecccCCceEEEEe----ccceEEEeecc-
Confidence 4445566666665332 112689999988877665 45578889999988888886 68999999984
Q ss_pred CeEEEee----e--CCCeeeEEEccCCCEEEEEE
Q 020756 158 GKQLGTT----R--AECSVTSEWSPDGRYFMTAT 185 (321)
Q Consensus 158 ~~~i~~~----~--~~~~~~~~wSpdG~~l~t~~ 185 (321)
|+.+... + ...|..+.+..+|-.+++.+
T Consensus 113 ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~ 146 (829)
T KOG2280|consen 113 GEFIESNSVGFESQMSDIVECRFFHNGVAVLTVS 146 (829)
T ss_pred hhhhcccccccccccCceeEEEEecCceEEEecC
Confidence 3333221 1 12566666666776666555
No 444
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=74.88 E-value=5.6 Score=41.48 Aligned_cols=134 Identities=14% Similarity=0.204 Sum_probs=69.5
Q ss_pred cceeEEEEEc-CCCceeeeecC---C-CCCeEEEEECcC-CCEEEEEEccCCCeEEEEeCCCc--eeEEeCCc-------
Q 020756 60 GESKLNYLTT-DGTHEGLVPLR---K-EGPVHDVQWSYS-GSEFAVVYGFMPASATIFNKKCR--PILELGSG------- 124 (321)
Q Consensus 60 g~~~l~~l~~-~g~~~~~v~l~---~-~~~v~~~~wsP~-g~~l~~~~g~~~~~i~i~d~~~~--~~~~~~~~------- 124 (321)
|+-.+|.+++ .|.-...+.+. . ..++.-+.|.|- -....+|++..++.+.+.+.... .++.-|..
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~ 232 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAF 232 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHH
Confidence 5555666654 44433443332 1 234566778772 11244555777777776554221 11111222
Q ss_pred ----CeeeEEEcCCCCeEEEEccCCCCCcEEEEEC-----CCCeEEEeeeCCC-eeeEEEccCC-----------CEEEE
Q 020756 125 ----PYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY-----VDGKQLGTTRAEC-SVTSEWSPDG-----------RYFMT 183 (321)
Q Consensus 125 ----~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~-----~~~~~i~~~~~~~-~~~~~wSpdG-----------~~l~t 183 (321)
...--..||||..++.+. .||.+.+|.. ....|+...+.|. --.++|..+. +++++
T Consensus 233 ~~~g~~~l~~lSpDGtv~a~a~---~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~It 309 (1283)
T KOG1916|consen 233 FAEGVLKLASLSPDGTVFAWAI---SDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRIT 309 (1283)
T ss_pred HhhchhhheeeCCCCcEEEEee---cCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEe
Confidence 222235899999999988 7777766653 3334455444442 2334554321 23334
Q ss_pred EEcCCceeecCcEEEEee
Q 020756 184 ATTAPRLQIDNGIKIFHH 201 (321)
Q Consensus 184 ~~s~~rl~~d~~v~iw~~ 201 (321)
++. +...+++|..
T Consensus 310 ttd-----~nre~k~w~~ 322 (1283)
T KOG1916|consen 310 TTD-----VNREEKFWAE 322 (1283)
T ss_pred ccc-----CCcceeEeec
Confidence 443 4567888875
No 445
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=74.35 E-value=7.4 Score=34.10 Aligned_cols=93 Identities=16% Similarity=0.088 Sum_probs=47.8
Q ss_pred cceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CC-cCeeeEEEcCCC
Q 020756 60 GESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GS-GPYNTVRWNPKG 135 (321)
Q Consensus 60 g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~-~~~~~~~~sPdG 135 (321)
|...+|.+...|....++....+.....+.--.++...++ +..++.++.++++-...... |. .+...+..+-.+
T Consensus 80 g~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~--~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd 157 (238)
T KOG2444|consen 80 GAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCV--GAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSD 157 (238)
T ss_pred ceEEEecCCccchHHHhhhcccccceeccccccccceeEE--eccCCceeeeccccCceeeeeccccCCCcceeEEecCC
Confidence 4444555555555444444332222222222223333333 57788999998854433322 23 344445555556
Q ss_pred CeEEEE--ccCCCCCcEEEEECCC
Q 020756 136 KFLCLA--GFGNLPGDMAFWDYVD 157 (321)
Q Consensus 136 ~~l~~~--g~~n~~g~i~iwD~~~ 157 (321)
++|+++ + .+..+++||+..
T Consensus 158 ~~i~~a~~S---~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 158 EFLKIADTS---HDRVLKKWNVEK 178 (238)
T ss_pred ceEEeeccc---cchhhhhcchhh
Confidence 666666 4 556677777653
No 446
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=72.62 E-value=35 Score=30.34 Aligned_cols=81 Identities=14% Similarity=0.177 Sum_probs=48.2
Q ss_pred CeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC--eE-E----EeeeCC-CeeeEEE
Q 020756 106 ASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG--KQ-L----GTTRAE-CSVTSEW 174 (321)
Q Consensus 106 ~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~--~~-i----~~~~~~-~~~~~~w 174 (321)
....+||+..+.+..+ .+..+..-.+-|||++|.++|.......+++++..+. .+ . ..+... .-....-
T Consensus 46 a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~ 125 (243)
T PF07250_consen 46 AHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATT 125 (243)
T ss_pred EEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceE
Confidence 3455677766655544 2344555578899999999986544456888886541 11 0 111111 1112344
Q ss_pred ccCCCEEEEEEc
Q 020756 175 SPDGRYFMTATT 186 (321)
Q Consensus 175 SpdG~~l~t~~s 186 (321)
-|||+.|+.+++
T Consensus 126 L~DG~vlIvGG~ 137 (243)
T PF07250_consen 126 LPDGRVLIVGGS 137 (243)
T ss_pred CCCCCEEEEeCc
Confidence 569999999886
No 447
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=72.37 E-value=43 Score=25.95 Aligned_cols=61 Identities=16% Similarity=0.240 Sum_probs=41.1
Q ss_pred ECcCCC-EEEEEEccCCCeEEEEeCCCceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756 90 WSYSGS-EFAVVYGFMPASATIFNKKCRPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 157 (321)
Q Consensus 90 wsP~g~-~l~~~~g~~~~~i~i~d~~~~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~ 157 (321)
|.-||. +|++ |+.|..|++|+-. +.+.++ ....+..+.-...++ ++.+- .+|+|-+|+...
T Consensus 10 ~d~dg~~eLlv--Gs~D~~IRvf~~~-e~~~Ei~e~~~v~~L~~~~~~~-F~Y~l---~NGTVGvY~~~~ 72 (111)
T PF14783_consen 10 FDGDGENELLV--GSDDFEIRVFKGD-EIVAEITETDKVTSLCSLGGGR-FAYAL---ANGTVGVYDRSQ 72 (111)
T ss_pred cCCCCcceEEE--ecCCcEEEEEeCC-cEEEEEecccceEEEEEcCCCE-EEEEe---cCCEEEEEeCcc
Confidence 334544 5555 6889999999865 455666 466777777777655 45544 568898887643
No 448
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=68.80 E-value=47 Score=33.77 Aligned_cols=62 Identities=18% Similarity=0.340 Sum_probs=46.8
Q ss_pred CeeeEEEcCCCCeEEEEc--cCCCCCcEEEEECCCCeEEEeeeCCCeeeEEEccCCCEEEEEEc
Q 020756 125 PYNTVRWNPKGKFLCLAG--FGNLPGDMAFWDYVDGKQLGTTRAECSVTSEWSPDGRYFMTATT 186 (321)
Q Consensus 125 ~~~~~~~sPdG~~l~~~g--~~n~~g~i~iwD~~~~~~i~~~~~~~~~~~~wSpdG~~l~t~~s 186 (321)
.+..++.|||+++|+.+- .|+..-++.|.|+.+++.+-..-......++|.+|++.|.....
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~~~~~~~~Wa~d~~~lfYt~~ 193 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEITNTSGSFAWAADGKTLFYTRL 193 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhcccccceEEecCCCeEEEEEE
Confidence 345788999999999863 23445679999999997665444445667899999999988875
No 449
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=67.90 E-value=28 Score=25.59 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=26.6
Q ss_pred CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC
Q 020756 122 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV 156 (321)
Q Consensus 122 ~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~ 156 (321)
+-...|.|.++|++++|.+++. ..+.|.+|.+.
T Consensus 52 g~~~aNGI~~s~~~k~lyVa~~--~~~~I~vy~~~ 84 (86)
T PF01731_consen 52 GFSFANGIAISPDKKYLYVASS--LAHSIHVYKRH 84 (86)
T ss_pred cCCCCceEEEcCCCCEEEEEec--cCCeEEEEEec
Confidence 3456788999999999999874 45899999865
No 450
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=65.95 E-value=28 Score=25.60 Aligned_cols=48 Identities=19% Similarity=0.438 Sum_probs=33.5
Q ss_pred CcEEEEECCCCeEEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756 148 GDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 148 g~i~iwD~~~~~~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
+.|..||....+ ..... .....+..|||+++|..++. ..+.|++|+..
T Consensus 36 ~~Vvyyd~~~~~--~va~g~~~aNGI~~s~~~k~lyVa~~-----~~~~I~vy~~~ 84 (86)
T PF01731_consen 36 GNVVYYDGKEVK--VVASGFSFANGIAISPDKKYLYVASS-----LAHSIHVYKRH 84 (86)
T ss_pred ceEEEEeCCEeE--EeeccCCCCceEEEcCCCCEEEEEec-----cCCeEEEEEec
Confidence 567777764322 22222 25667999999999999987 47889988753
No 451
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=65.93 E-value=1.3e+02 Score=29.06 Aligned_cols=105 Identities=16% Similarity=0.255 Sum_probs=63.4
Q ss_pred eeecCCCCCeEEEEECc-----CCCEEEEEEccCCCeEEEEeCC---Cc-----ee--EEe--CCc--CeeeEEEcCCC-
Q 020756 76 LVPLRKEGPVHDVQWSY-----SGSEFAVVYGFMPASATIFNKK---CR-----PI--LEL--GSG--PYNTVRWNPKG- 135 (321)
Q Consensus 76 ~v~l~~~~~v~~~~wsP-----~g~~l~~~~g~~~~~i~i~d~~---~~-----~~--~~~--~~~--~~~~~~~sPdG- 135 (321)
.+....+.||-.+..-. +..+||| -.|.++.||.+. +. .. ..+ |.- ....+.+-|.|
T Consensus 65 llE~~l~~PILqv~~G~F~s~~~~~~LaV---LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg 141 (418)
T PF14727_consen 65 LLETQLKDPILQVECGKFVSGSEDLQLAV---LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGG 141 (418)
T ss_pred EEEEecCCcEEEEEeccccCCCCcceEEE---ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCC
Confidence 34445678999888854 3447777 458899999872 11 11 111 211 12233344443
Q ss_pred ----CeEEEEccCCCCCcEEEEECCCCeEEEeeeCC-CeeeEEEccCCCEEEEEEc
Q 020756 136 ----KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE-CSVTSEWSPDGRYFMTATT 186 (321)
Q Consensus 136 ----~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~-~~~~~~wSpdG~~l~t~~s 186 (321)
.+|++=+ +||.+.||+-+.......+... -...+.+++.-..|+++++
T Consensus 142 ~~~~~~IcVQS---~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 142 VKGRDFICVQS---MDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred CCCceEEEEEe---cCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecC
Confidence 3666666 8999999998765444444332 2334788888777888775
No 452
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=65.79 E-value=80 Score=29.85 Aligned_cols=28 Identities=14% Similarity=0.367 Sum_probs=19.2
Q ss_pred CCeEEEEccCCCCCcEEEEECCCCeEEEeee
Q 020756 135 GKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR 165 (321)
Q Consensus 135 G~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~ 165 (321)
+..|++++ .+|.|+++|..+|+.+...+
T Consensus 335 ~g~l~v~~---~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 335 NGYLVVGD---SEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred CCEEEEEe---CCCEEEEEECCCCCEEEEEE
Confidence 44555555 67888888888887766554
No 453
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=65.74 E-value=35 Score=35.52 Aligned_cols=95 Identities=18% Similarity=0.288 Sum_probs=58.8
Q ss_pred CCCeEEEEECcCCCEEEEEE--ccCCC-eEEEEeCCCceeEEe-----CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEE
Q 020756 82 EGPVHDVQWSYSGSEFAVVY--GFMPA-SATIFNKKCRPILEL-----GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW 153 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~--g~~~~-~i~i~d~~~~~~~~~-----~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw 153 (321)
.|.-+.+.|-|+|..++++. |+.+. .+.+|...+-.--.| ....+..+.|+-....++.+ ....|.+|
T Consensus 246 ~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~vlav~----~~n~~~lw 321 (1243)
T COG5290 246 TGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLSTVLAVA----EGNLLKLW 321 (1243)
T ss_pred ccchhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHHHHHHh----hcceEEEE
Confidence 35557799999999999984 12222 566676543211111 23344567787666655554 34689999
Q ss_pred ECCCCe--EEEeeeCCCeeeEEEccCCCE
Q 020756 154 DYVDGK--QLGTTRAECSVTSEWSPDGRY 180 (321)
Q Consensus 154 D~~~~~--~i~~~~~~~~~~~~wSpdG~~ 180 (321)
-..+.. +......+.+..+.|+|.-..
T Consensus 322 ttkNyhWYLK~e~~ip~~s~vkwhpe~~n 350 (1243)
T COG5290 322 TTKNYHWYLKVERQIPGISYVKWHPEEKN 350 (1243)
T ss_pred EccceEEEEEEeecCCCcceeeeccccCc
Confidence 887764 333344567888999996443
No 454
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=65.69 E-value=1.7e+02 Score=30.14 Aligned_cols=151 Identities=13% Similarity=0.158 Sum_probs=81.0
Q ss_pred cCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCcee--eeecCCCC------CeEEEEECcCCCEEEE
Q 020756 28 RCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEG--LVPLRKEG------PVHDVQWSYSGSEFAV 99 (321)
Q Consensus 28 ~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~--~v~l~~~~------~v~~~~wsP~g~~l~~ 99 (321)
+...+.+++..++..++++... |...+|..+.... +. ...+.+.. -|.++...-..+++++
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~n----------G~i~~~d~~~~~l-~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~ 197 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLEN----------GSIQIYDFSENSL-EKVPQLKLKSSINVSYSKFVNDFELENGKDLLLT 197 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcC----------CcEEEEecccccc-ccccccccccccceehhhhhcccccccCCceEEE
Confidence 5567788888888888876432 5555665511111 11 11112222 2222222222334444
Q ss_pred EEc-cCC-CeEEEEeC--CCceeEEeC-----C-cCe-eeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCCC
Q 020756 100 VYG-FMP-ASATIFNK--KCRPILELG-----S-GPY-NTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAEC 168 (321)
Q Consensus 100 ~~g-~~~-~~i~i~d~--~~~~~~~~~-----~-~~~-~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~~ 168 (321)
++. ... -..+++.+ ....+..+. . ... ..++|. +|.+..+.. .+|.+|++-+.+...++.-+.
T Consensus 198 v~~~~~~k~~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l~~-----~~i~~ysip~f~~~~tI~l~~ 271 (670)
T PF10395_consen 198 VSQLSNSKLSYKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQLSK-----KTISSYSIPNFQIQKTISLPS 271 (670)
T ss_pred EEEcCCCcEEEEEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEEeC-----CEEEEEEcCCceEEEEEEech
Confidence 433 222 25667777 445555442 1 111 234555 777776643 699999998887766665541
Q ss_pred ee------eEEE-ccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756 169 SV------TSEW-SPDGRYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 169 ~~------~~~w-SpdG~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
+. .+++ +|+-.+++.+. ++.+++.|+.
T Consensus 272 ii~~~~~~~vSl~~~s~nRvLLs~-------~nkIyLld~~ 305 (670)
T PF10395_consen 272 IIDKESDDLVSLKPPSPNRVLLSV-------NNKIYLLDLK 305 (670)
T ss_pred hhccccccceEeecCCCCeEEEEc-------CCEEEEEeeh
Confidence 11 1233 45666666666 7899999984
No 455
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=64.75 E-value=2e+02 Score=30.81 Aligned_cols=106 Identities=9% Similarity=0.214 Sum_probs=67.0
Q ss_pred CeEEEEECcC-CCEEEEEEcc--------CCCeEEEEeCCC-ceeEEeC----CcCeeeE-EEcCCCCeEEEEccCCCCC
Q 020756 84 PVHDVQWSYS-GSEFAVVYGF--------MPASATIFNKKC-RPILELG----SGPYNTV-RWNPKGKFLCLAGFGNLPG 148 (321)
Q Consensus 84 ~v~~~~wsP~-g~~l~~~~g~--------~~~~i~i~d~~~-~~~~~~~----~~~~~~~-~~sPdG~~l~~~g~~n~~g 148 (321)
.|.++.|..| +.+++|..+. ..|+|.+|.... +.+...+ .+.+.++ .| +|++||..+ .
T Consensus 776 Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ngkllA~In-----~ 848 (1096)
T KOG1897|consen 776 SIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--NGKLLAGIN-----Q 848 (1096)
T ss_pred eeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh--CCeEEEecC-----c
Confidence 4566778777 6677774321 125777776633 3333333 3333333 33 477777765 7
Q ss_pred cEEEEECCCCeEEEeeeCC--CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeec
Q 020756 149 DMAFWDYVDGKQLGTTRAE--CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 149 ~i~iwD~~~~~~i~~~~~~--~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
.|++|+..+.+.+..-..+ .+..+...-.|..|+.|-. -..+.+..+.
T Consensus 849 ~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDl------m~Sitll~y~ 898 (1096)
T KOG1897|consen 849 SVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDL------MRSITLLQYK 898 (1096)
T ss_pred EEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeec------cceEEEEEEe
Confidence 8999999887666544443 6777888889999999884 5566665553
No 456
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=64.55 E-value=44 Score=29.11 Aligned_cols=24 Identities=17% Similarity=0.153 Sum_probs=18.5
Q ss_pred ECcCCCEEEEEEccCCCeEEEEeCCC
Q 020756 90 WSYSGSEFAVVYGFMPASATIFNKKC 115 (321)
Q Consensus 90 wsP~g~~l~~~~g~~~~~i~i~d~~~ 115 (321)
...++++++++ ...|.+++||+..
T Consensus 18 l~~~~~~Ll~i--T~~G~l~vWnl~~ 41 (219)
T PF07569_consen 18 LECNGSYLLAI--TSSGLLYVWNLKK 41 (219)
T ss_pred EEeCCCEEEEE--eCCCeEEEEECCC
Confidence 44568888777 5578999999964
No 457
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=64.45 E-value=1e+02 Score=27.36 Aligned_cols=121 Identities=17% Similarity=0.165 Sum_probs=67.3
Q ss_pred eeeecCCCCCeEEEEECcCCCEEEEEEccCCC--eEEEEeCCC----ceeEEe----C-CcCeeeEEEcCCCCeEEEEcc
Q 020756 75 GLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKC----RPILEL----G-SGPYNTVRWNPKGKFLCLAGF 143 (321)
Q Consensus 75 ~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~--~i~i~d~~~----~~~~~~----~-~~~~~~~~~sPdG~~l~~~g~ 143 (321)
+.+.+...--+..-.+-|||+.+.+- |..++ .+++|+--. ..+.+. . ....-+..--|||+.|+++|.
T Consensus 59 rpl~v~td~FCSgg~~L~dG~ll~tG-G~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~ 137 (243)
T PF07250_consen 59 RPLTVQTDTFCSGGAFLPDGRLLQTG-GDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGS 137 (243)
T ss_pred EeccCCCCCcccCcCCCCCCCEEEeC-CCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCc
Confidence 33444444444455677899877653 44443 677887522 122222 1 112234556689999999995
Q ss_pred CCCCCcEEEEECCCC--eEEEe--ee---C--C-Cee-eEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee
Q 020756 144 GNLPGDMAFWDYVDG--KQLGT--TR---A--E-CSV-TSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF 206 (321)
Q Consensus 144 ~n~~g~i~iwD~~~~--~~i~~--~~---~--~-~~~-~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l 206 (321)
. ....++|..... ..... +. . . +.. .+...|||+.|+.+. +.-.|||+....+
T Consensus 138 ~--~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an--------~~s~i~d~~~n~v 201 (243)
T PF07250_consen 138 N--NPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFAN--------RGSIIYDYKTNTV 201 (243)
T ss_pred C--CCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEc--------CCcEEEeCCCCeE
Confidence 4 356778876321 11111 11 0 1 111 256689999998877 2456778866543
No 458
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=64.34 E-value=80 Score=29.93 Aligned_cols=117 Identities=17% Similarity=0.167 Sum_probs=63.3
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe----C---CcCeeeEEEcCCCCeEEE--------------E
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL----G---SGPYNTVRWNPKGKFLCL--------------A 141 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~----~---~~~~~~~~~sPdG~~l~~--------------~ 141 (321)
|.--.++|...|..|+++.++. -+..-+..++....+ . -.-.|.+...|+|....+ .
T Consensus 115 GRPLGl~f~~~ggdL~VaDAYl--GL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~~a~ 192 (376)
T KOG1520|consen 115 GRPLGIRFDKKGGDLYVADAYL--GLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFVFAA 192 (376)
T ss_pred CCcceEEeccCCCeEEEEecce--eeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheEEee
Confidence 5666899999888888874432 222233333322211 0 012344555554433222 2
Q ss_pred ccCCCCCcEEEEECCCCeEEEeeeC-CCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee
Q 020756 142 GFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF 206 (321)
Q Consensus 142 g~~n~~g~i~iwD~~~~~~i~~~~~-~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l 206 (321)
-.+...|.+.-||..+.......+. .-...++.|||+.+++++-+. -..++-|-+.|...
T Consensus 193 l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~-----~~ri~rywi~g~k~ 253 (376)
T KOG1520|consen 193 LEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETT-----TARIKRYWIKGPKA 253 (376)
T ss_pred ecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeec-----cceeeeeEecCCcc
Confidence 2223467777788765533222222 255668999999999998863 33444444665433
No 459
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=64.03 E-value=1.4e+02 Score=28.64 Aligned_cols=70 Identities=16% Similarity=0.255 Sum_probs=45.3
Q ss_pred CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCCeEEEeee--C--------CCeeeEEEcc-----CC---CEEEE
Q 020756 122 GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTR--A--------ECSVTSEWSP-----DG---RYFMT 183 (321)
Q Consensus 122 ~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~--~--------~~~~~~~wSp-----dG---~~l~t 183 (321)
..+++.++.-| |=-|++++- .+|.+.|.|++.-..|.... . ..++.++|+- |+ -.+++
T Consensus 85 ~~g~vtal~~S-~iGFvaigy---~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 85 KQGPVTALKNS-DIGFVAIGY---ESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp -S-SEEEEEE--BTSEEEEEE---TTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred cCCcEeEEecC-CCcEEEEEe---cCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 46788888887 445888876 78999999997666655421 1 1566788873 33 45666
Q ss_pred EEcCCceeecCcEEEEee
Q 020756 184 ATTAPRLQIDNGIKIFHH 201 (321)
Q Consensus 184 ~~s~~rl~~d~~v~iw~~ 201 (321)
+++ .+.+.+|.+
T Consensus 161 GTn------~G~v~~fkI 172 (395)
T PF08596_consen 161 GTN------SGNVLTFKI 172 (395)
T ss_dssp EET------TSEEEEEEE
T ss_pred EeC------CCCEEEEEE
Confidence 664 567777766
No 460
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=61.20 E-value=58 Score=30.08 Aligned_cols=59 Identities=22% Similarity=0.348 Sum_probs=43.0
Q ss_pred CeEEEEeCCCceeEEe-CCcCeee---EEE-----cCCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeC
Q 020756 106 ASATIFNKKCRPILEL-GSGPYNT---VRW-----NPKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA 166 (321)
Q Consensus 106 ~~i~i~d~~~~~~~~~-~~~~~~~---~~~-----sPdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~ 166 (321)
+-|-+||..+..++++ ..+..|+ ++- -.-..-|+++.|| ||+|..+|..+++.+..+..
T Consensus 222 G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFG--DG~InaFD~~sG~~~g~L~~ 289 (336)
T TIGR03118 222 GYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFG--DGTINAYDPQSGAQLGQLLD 289 (336)
T ss_pred ceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecC--CceeEEecCCCCceeeeecC
Confidence 4688999999999988 4444443 333 3334567778776 59999999999987777665
No 461
>PRK13615 lipoprotein LpqB; Provisional
Probab=60.90 E-value=1.9e+02 Score=29.15 Aligned_cols=154 Identities=6% Similarity=0.022 Sum_probs=82.2
Q ss_pred ceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEE
Q 020756 32 VQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIF 111 (321)
Q Consensus 32 ~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~ 111 (321)
..+.-|++|..++++. ..+ .+.+...+.....+ .....+....|+++|-.-.+. ......+..+
T Consensus 337 ~s~avS~dg~~~A~v~-----~~~--------~l~vg~~~~~~~~~--~~~~~Lt~PS~d~~g~vWtv~-~g~~~~l~~~ 400 (557)
T PRK13615 337 DAATLSADGRQAAVRN-----ASG--------VWSVGDGDRDAVLL--DTRPGLVAPSLDAQGYVWSTP-ASDPRGLVAW 400 (557)
T ss_pred ccceEcCCCceEEEEc-----CCc--------eEEEecCCCcceee--ccCCccccCcCcCCCCEEEEe-CCCceEEEEe
Confidence 3556678888877751 111 23333333222222 223357778899888333332 2222333333
Q ss_pred eCCCceeE-Ee---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC--CCC--eEE-Eee-e----CCCeeeEEEccC
Q 020756 112 NKKCRPIL-EL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY--VDG--KQL-GTT-R----AECSVTSEWSPD 177 (321)
Q Consensus 112 d~~~~~~~-~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~--~~~--~~i-~~~-~----~~~~~~~~wSpd 177 (321)
...+.... .. ....|..+..|+||-.+++....+..+.|+|--+ ..+ ..+ ... + ...+.+++|..+
T Consensus 401 ~~~G~~~~v~v~~~~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~ 480 (557)
T PRK13615 401 GPDGVGHPVAVSWTATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDE 480 (557)
T ss_pred cCCCceEEeeccccCCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCC
Confidence 33333321 11 3467999999999998888643334466776322 223 223 111 1 116778999999
Q ss_pred CCEEEEEEcCCceeecCcEEEEeecCc
Q 020756 178 GRYFMTATTAPRLQIDNGIKIFHHNGS 204 (321)
Q Consensus 178 G~~l~t~~s~~rl~~d~~v~iw~~~g~ 204 (321)
+...+.+.... .+..+++..+.|.
T Consensus 481 ~~laVl~~~~~---~~~~v~~v~v~g~ 504 (557)
T PRK13615 481 LDVATLTLAPD---GERQVELHQVGGP 504 (557)
T ss_pred CEEEEEeccCC---CCceEEEEECCCc
Confidence 99877764311 2455777777653
No 462
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=59.38 E-value=38 Score=29.48 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=31.4
Q ss_pred CCcEEEEECC--CCeEEEeeeC-CCeeeEEEccCCCEEEEEEc
Q 020756 147 PGDMAFWDYV--DGKQLGTTRA-ECSVTSEWSPDGRYFMTATT 186 (321)
Q Consensus 147 ~g~i~iwD~~--~~~~i~~~~~-~~~~~~~wSpdG~~l~t~~s 186 (321)
.+.|++||+. ..+.+..|.. ..+..+.++..|.||+|--.
T Consensus 37 g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 37 GCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred CCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEe
Confidence 3789999988 2356666655 37889999999999998764
No 463
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=58.23 E-value=1.3e+02 Score=27.49 Aligned_cols=111 Identities=12% Similarity=0.232 Sum_probs=64.7
Q ss_pred eEEEEeCCCceeEEeC---CcCeeeEEEcCCCCeEEEEccC---CCCCcEEEEECCCCeEEEeeeC------CCeeeEEE
Q 020756 107 SATIFNKKCRPILELG---SGPYNTVRWNPKGKFLCLAGFG---NLPGDMAFWDYVDGKQLGTTRA------ECSVTSEW 174 (321)
Q Consensus 107 ~i~i~d~~~~~~~~~~---~~~~~~~~~sPdG~~l~~~g~~---n~~g~i~iwD~~~~~~i~~~~~------~~~~~~~w 174 (321)
.+++||....++..++ .+.|..+.|.-+.++++.+.|. +....+-.||.++..-...... ..++.+.+
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~~ 96 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALTF 96 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEEe
Confidence 7999999998888884 4678999999555555555442 1345678899877643221110 14445544
Q ss_pred c-cCCC-EEEEEEcCCceeecCcEEEEeecCceeEEec------cCceEEEEEecC
Q 020756 175 S-PDGR-YFMTATTAPRLQIDNGIKIFHHNGSLFFKKM------FDKLFQAEWKPV 222 (321)
Q Consensus 175 S-pdG~-~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~------~~~~~~~~w~P~ 222 (321)
. -|+. +++.+.. .++.-.|..++|..-.... ...+.++.+-|-
T Consensus 97 ~~~d~~~~~~aG~~-----~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 97 ISNDGSNFWVAGRS-----ANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLPL 147 (281)
T ss_pred eccCCceEEEecee-----cCCCceEEEEcCCceEeccccccCCCCEEEEEEEEec
Confidence 2 3544 4444443 2555566666665432211 235666666665
No 464
>PRK13684 Ycf48-like protein; Provisional
Probab=57.24 E-value=1.6e+02 Score=27.26 Aligned_cols=102 Identities=7% Similarity=0.017 Sum_probs=56.4
Q ss_pred eeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEe--C----CcCeeeEEEcCCCCeEEEEccCCCCC
Q 020756 76 LVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILEL--G----SGPYNTVRWNPKGKFLCLAGFGNLPG 148 (321)
Q Consensus 76 ~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~--~----~~~~~~~~~sPdG~~l~~~g~~n~~g 148 (321)
.+.......++++.+.|+++.+++ |. .+.+.+=+.+ +...... + ...+..+.+.|+++.++++ .+|
T Consensus 208 ~~~~~~~~~l~~i~~~~~g~~~~v--g~-~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G----~~G 280 (334)
T PRK13684 208 PHQRNSSRRLQSMGFQPDGNLWML--AR-GGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG----GNG 280 (334)
T ss_pred EeeCCCcccceeeeEcCCCCEEEE--ec-CCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc----CCC
Confidence 334345678899999999987665 32 3444322222 2222222 1 2346678999988866655 445
Q ss_pred cEEEEECCCCeEEEeee---C--CCeeeEEEccCCCEEEEEE
Q 020756 149 DMAFWDYVDGKQLGTTR---A--ECSVTSEWSPDGRYFMTAT 185 (321)
Q Consensus 149 ~i~iwD~~~~~~i~~~~---~--~~~~~~~wSpdG~~l~t~~ 185 (321)
.|. .-.+.++.-.... . .....+.|..+++.++++.
T Consensus 281 ~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 321 (334)
T PRK13684 281 TLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQ 321 (334)
T ss_pred eEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECC
Confidence 554 3344343222221 1 1456677777777777665
No 465
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.14 E-value=1.2e+02 Score=30.14 Aligned_cols=127 Identities=13% Similarity=0.132 Sum_probs=69.9
Q ss_pred EEEEEccCCCeEEEEeC-CCceeEEeC-CcCeeeEEEcCCCCeEEEEccCC----CCCcEEEEECCC-Ce-EEEeeeCC-
Q 020756 97 FAVVYGFMPASATIFNK-KCRPILELG-SGPYNTVRWNPKGKFLCLAGFGN----LPGDMAFWDYVD-GK-QLGTTRAE- 167 (321)
Q Consensus 97 l~~~~g~~~~~i~i~d~-~~~~~~~~~-~~~~~~~~~sPdG~~l~~~g~~n----~~g~i~iwD~~~-~~-~i~~~~~~- 167 (321)
+++..+.....++-.|+ +++.+.+.. ...++-+.+.|++++--+..... .+..|.-||.+- ++ .+...+.+
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 33333444456666677 455555551 22378888898865332221111 357899999762 22 33333333
Q ss_pred Ce----eeEEEccCCCEEEEEEcCCceeecCcEEEEeecCcee---EEeccCceEEEEEecCCCCCCCC
Q 020756 168 CS----VTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLF---FKKMFDKLFQAEWKPVSPDKFGD 229 (321)
Q Consensus 168 ~~----~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l---~~~~~~~~~~~~w~P~~~~~~~~ 229 (321)
.. .++.-....-||+.++ .++.|+|||-.|..- +.+--..+..+.-.-++..|+..
T Consensus 427 y~~k~nFsc~aTT~sG~IvvgS------~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~T 489 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESGYIVVGS------LKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILAT 489 (644)
T ss_pred cccccccceeeecCCceEEEee------cCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEe
Confidence 11 2222222345688888 499999999865543 22222456666666677766654
No 466
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=53.09 E-value=1.2e+02 Score=30.33 Aligned_cols=29 Identities=10% Similarity=0.285 Sum_probs=17.5
Q ss_pred CeEEEEECcCC---CEEEEEEccCCCeEEEEeCC
Q 020756 84 PVHDVQWSYSG---SEFAVVYGFMPASATIFNKK 114 (321)
Q Consensus 84 ~v~~~~wsP~g---~~l~~~~g~~~~~i~i~d~~ 114 (321)
.+..++|+|++ .+|.+. ..|..+++||+.
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL--~sdnviRiy~lS 198 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLL--TSDNVIRIYSLS 198 (741)
T ss_pred eeeeccccCCccCCceEEEE--ecCcEEEEEecC
Confidence 45567777765 355554 345677777763
No 467
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=50.01 E-value=1.3e+02 Score=24.12 Aligned_cols=63 Identities=14% Similarity=0.158 Sum_probs=35.8
Q ss_pred CCeEEEEccCCCCCcEEEEECCCCeEEEeeeC-CCeeeEEE---cc-CCCEEEEEEcCCceeecCcEEEEeecCceeE
Q 020756 135 GKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA-ECSVTSEW---SP-DGRYFMTATTAPRLQIDNGIKIFHHNGSLFF 207 (321)
Q Consensus 135 G~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~-~~~~~~~w---Sp-dG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~ 207 (321)
++-+++.| ....|..||+.+..-+-.-+- ..+..+.+ .. +..+++.++ ...|.-||..|..++
T Consensus 63 ~~D~LliG---t~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGG-------ncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 63 GRDCLLIG---TQTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGG-------NCSIQGFDYEGNEIF 130 (136)
T ss_pred CcCEEEEe---ccceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECc-------eEEEEEeCCCCcEEE
Confidence 34344444 456899999987643322222 24444443 22 455555555 567777888877663
No 468
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=49.93 E-value=38 Score=33.72 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=27.1
Q ss_pred eeeEEEcC----CCCeEEEEccCCCCCcEEEEECCCCeEEEee
Q 020756 126 YNTVRWNP----KGKFLCLAGFGNLPGDMAFWDYVDGKQLGTT 164 (321)
Q Consensus 126 ~~~~~~sP----dG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~ 164 (321)
...+..++ +..+|++.. .|+.|++||+.+++++.+.
T Consensus 217 ~~~~~~~~~~~~~~~~l~tl~---~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 217 AASLAVSSSEINDDTFLFTLS---RDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EEEEEE-----ETTTEEEEEE---TTSEEEEEETTTTCEEEEE
T ss_pred cceEEEecceeCCCCEEEEEe---CCCeEEEEECCCCeEEEEe
Confidence 44566666 667887777 8999999999999986654
No 469
>PRK13614 lipoprotein LpqB; Provisional
Probab=49.39 E-value=3e+02 Score=27.91 Aligned_cols=74 Identities=12% Similarity=0.079 Sum_probs=48.4
Q ss_pred CeEEEEECcCCCEEEEEEccCCC--eEEEEeC----CCceeE-----Ee-CCcCeeeEEEcCCCCeEEEEccCCCCCcEE
Q 020756 84 PVHDVQWSYSGSEFAVVYGFMPA--SATIFNK----KCRPIL-----EL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMA 151 (321)
Q Consensus 84 ~v~~~~wsP~g~~l~~~~g~~~~--~i~i~d~----~~~~~~-----~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~ 151 (321)
.|..++.|+||-.++++... ++ +|.|--+ .+.+.. .+ ....+.++.|..++.+++.+.....+..++
T Consensus 435 ~I~~lrvSrDG~R~Avi~~~-~g~~~V~va~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~V~~~~~~~~~~~~ 513 (573)
T PRK13614 435 TVKELRVSREGVRALVISEQ-NGKSRVQVAGIVRNEDGTPRELTAPITLAADSDADTGAWVGDSTVVVTKASATSNVVPE 513 (573)
T ss_pred eeEEEEECCCccEEEEEEEe-CCccEEEEEEEEeCCCCCeEEccCceecccCCCcceeEEcCCCEEEEEeccCCCcceEE
Confidence 49999999999999987532 33 3555432 333121 11 235778899999999888865322345677
Q ss_pred EEECCCC
Q 020756 152 FWDYVDG 158 (321)
Q Consensus 152 iwD~~~~ 158 (321)
+..+..+
T Consensus 514 ~v~v~~g 520 (573)
T PRK13614 514 LLSVDAG 520 (573)
T ss_pred EEEeCCC
Confidence 7777544
No 470
>KOG4305 consensus RhoGEF GTPase [Signal transduction mechanisms]
Probab=48.63 E-value=2.4e+02 Score=30.56 Aligned_cols=90 Identities=17% Similarity=0.092 Sum_probs=53.4
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-----CceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCC
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-----CRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVD 157 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-----~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~ 157 (321)
-||.-+..++ .|+.||.. -+.+-|-. ...++.+...+...-.|.| +|+.-+ +.-|.|||+++
T Consensus 914 kp~~ifri~~---~Fllcy~~---~~f~vn~~G~~~~~~~~~~w~g~p~~~a~~~~---yiia~~----~~fIeI~~~~t 980 (1029)
T KOG4305|consen 914 KPVAIFRISG---EFLLCYDE---FAFFVNDQGWRSRTSWIFLWEGEPQEFALSYP---YIIAFG----DNFIEIRDLET 980 (1029)
T ss_pred ceeEEEEecC---eEEEEecc---eEEEEcCCcceecccEEEEEcCccceeeeecc---eEEEec----CceEEEEeccc
Confidence 3455555555 77777542 12222322 2233444455666666766 555543 46899999999
Q ss_pred CeEEEeeeCCCee----eEEEccCCCEEEEEE
Q 020756 158 GKQLGTTRAECSV----TSEWSPDGRYFMTAT 185 (321)
Q Consensus 158 ~~~i~~~~~~~~~----~~~wSpdG~~l~t~~ 185 (321)
++++....++.+- ...|.-+|..++...
T Consensus 981 ~eli~~i~~~~Ir~~~~~~~~l~~~~~~~~~~ 1012 (1029)
T KOG4305|consen 981 GELIQIILGQNIRLLTSGLGPLLHGGKIIYYC 1012 (1029)
T ss_pred ceeeEEeeccceeEeecCcccccCCCeEEEEE
Confidence 9999887776443 255666655555554
No 471
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=47.68 E-value=2.2e+02 Score=25.91 Aligned_cols=98 Identities=21% Similarity=0.288 Sum_probs=57.4
Q ss_pred EEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEcc------CCCeEEEEeCCCceeEEeCC-------cCeeeEE
Q 020756 64 LNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGF------MPASATIFNKKCRPILELGS-------GPYNTVR 130 (321)
Q Consensus 64 l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~------~~~~i~i~d~~~~~~~~~~~-------~~~~~~~ 130 (321)
|.+++..+.+-...--.-.+.|+++.|.-+ +.+++. |. ....+..||.+...+..++. +++..+.
T Consensus 18 lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~-~~Llv~-G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~~ 95 (281)
T PF12768_consen 18 LCLYDTDNSQWSSPGNGISGTVTDLQWASN-NQLLVG-GNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTALT 95 (281)
T ss_pred EEEEECCCCEeecCCCCceEEEEEEEEecC-CEEEEE-EeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEEE
Confidence 444444443333222234688999999844 445443 22 34578889998888877733 5677776
Q ss_pred Ec-CCCCeEEEEcc-CCCCCcEEEEECCCCeEEEe
Q 020756 131 WN-PKGKFLCLAGF-GNLPGDMAFWDYVDGKQLGT 163 (321)
Q Consensus 131 ~s-PdG~~l~~~g~-~n~~g~i~iwD~~~~~~i~~ 163 (321)
+. -|+..+.++|. .+....|..||-.+...+..
T Consensus 96 ~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~ 130 (281)
T PF12768_consen 96 FISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGS 130 (281)
T ss_pred eeccCCceEEEeceecCCCceEEEEcCCceEeccc
Confidence 64 35555554443 33345677887766655544
No 472
>PRK13615 lipoprotein LpqB; Provisional
Probab=46.75 E-value=3.1e+02 Score=27.65 Aligned_cols=131 Identities=12% Similarity=0.090 Sum_probs=73.6
Q ss_pred EEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECC-CCeEEEe-
Q 020756 86 HDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYV-DGKQLGT- 163 (321)
Q Consensus 86 ~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~-~~~~i~~- 163 (321)
.+++.|++|..++++.+ ++.+.++...+.....+.........|.++| .+=+..-++ ...+.... +++....
T Consensus 337 ~s~avS~dg~~~A~v~~--~~~l~vg~~~~~~~~~~~~~~Lt~PS~d~~g-~vWtv~~g~---~~~l~~~~~~G~~~~v~ 410 (557)
T PRK13615 337 DAATLSADGRQAAVRNA--SGVWSVGDGDRDAVLLDTRPGLVAPSLDAQG-YVWSTPASD---PRGLVAWGPDGVGHPVA 410 (557)
T ss_pred ccceEcCCCceEEEEcC--CceEEEecCCCcceeeccCCccccCcCcCCC-CEEEEeCCC---ceEEEEecCCCceEEee
Confidence 67899999999998733 5577777665443333344456778888888 443333111 23333322 2332211
Q ss_pred ---eeCCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEee--cCc---ee----EE--eccCceEEEEEecCCCC
Q 020756 164 ---TRAECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH--NGS---LF----FK--KMFDKLFQAEWKPVSPD 225 (321)
Q Consensus 164 ---~~~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~--~g~---~l----~~--~~~~~~~~~~w~P~~~~ 225 (321)
.....|+.+..|+||-.++.-.... ....+.|--+ .+. .| .. .....+.++.|..+..-
T Consensus 411 v~~~~~~~I~~lrvSrDG~R~Avi~~~~---g~~~V~va~V~R~~~~P~~L~~~p~~l~~~l~~v~sl~W~~~~~l 483 (557)
T PRK13615 411 VSWTATGRVVSLEVARDGARVLVQLETG---AGPQLLVASIVRDGGVPTSLTTTPLELLASPGTPLDATWVDELDV 483 (557)
T ss_pred ccccCCCeeEEEEeCCCccEEEEEEecC---CCCEEEEEEEEeCCCcceEeeeccEEcccCcCcceeeEEcCCCEE
Confidence 1112688999999999999865310 0133444222 222 12 11 12337788999988764
No 473
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=46.70 E-value=2.8e+02 Score=26.87 Aligned_cols=126 Identities=13% Similarity=0.223 Sum_probs=69.2
Q ss_pred eecceeEEEEEcCCCceeeeecCC----CCCeEEEEECcCCCEEEEEEccCC--------CeEEEEeCCCceeEEe---C
Q 020756 58 YYGESKLNYLTTDGTHEGLVPLRK----EGPVHDVQWSYSGSEFAVVYGFMP--------ASATIFNKKCRPILEL---G 122 (321)
Q Consensus 58 ~~g~~~l~~l~~~g~~~~~v~l~~----~~~v~~~~wsP~g~~l~~~~g~~~--------~~i~i~d~~~~~~~~~---~ 122 (321)
+|.-..+|++++....-.++.+.- .....-++|- ++|++..|+.+ ..+++||++.-.+..+ +
T Consensus 150 F~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK---~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsg 226 (521)
T KOG1230|consen 150 FHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWK---RQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSG 226 (521)
T ss_pred hhhhhheeeeeeccchheeeccCCCCCCCccceeEEee---eeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCC
Confidence 334444677776555445554331 1223345554 23444434433 2477888877666666 2
Q ss_pred --CcCee--eEEEcCCCCeEEEEccCC------C-----CCcEEEEECCCC-------eEEEeeeC---C-CeeeEEEcc
Q 020756 123 --SGPYN--TVRWNPKGKFLCLAGFGN------L-----PGDMAFWDYVDG-------KQLGTTRA---E-CSVTSEWSP 176 (321)
Q Consensus 123 --~~~~~--~~~~sPdG~~l~~~g~~n------~-----~g~i~iwD~~~~-------~~i~~~~~---~-~~~~~~wSp 176 (321)
..++. ++...|+|..++.+|+.- . -.++.+.+.+.+ ..+..+.. + .-.+++..+
T Consensus 227 a~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~ 306 (521)
T KOG1230|consen 227 AGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAK 306 (521)
T ss_pred CCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEec
Confidence 22333 466678999999998721 1 123444455442 12222211 1 345678889
Q ss_pred CCCEEEEEEc
Q 020756 177 DGRYFMTATT 186 (321)
Q Consensus 177 dG~~l~t~~s 186 (321)
+++-+++++-
T Consensus 307 n~kal~FGGV 316 (521)
T KOG1230|consen 307 NHKALFFGGV 316 (521)
T ss_pred CCceEEecce
Confidence 9999998874
No 474
>PHA03098 kelch-like protein; Provisional
Probab=45.45 E-value=3.1e+02 Score=27.02 Aligned_cols=52 Identities=12% Similarity=0.145 Sum_probs=29.5
Q ss_pred eEEEEeCCCceeEEeCCc---CeeeEEEcCCCCeEEEEccCCCC-----CcEEEEECCCC
Q 020756 107 SATIFNKKCRPILELGSG---PYNTVRWNPKGKFLCLAGFGNLP-----GDMAFWDYVDG 158 (321)
Q Consensus 107 ~i~i~d~~~~~~~~~~~~---~~~~~~~sPdG~~l~~~g~~n~~-----g~i~iwD~~~~ 158 (321)
.+..||...+.+...... ........-+++..+++|..+.+ ..+++||..+.
T Consensus 407 ~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~ 466 (534)
T PHA03098 407 TVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTN 466 (534)
T ss_pred eEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCC
Confidence 578889877666655221 11122233356666777643211 24889998765
No 475
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=43.91 E-value=3e+02 Score=26.38 Aligned_cols=90 Identities=14% Similarity=0.131 Sum_probs=47.9
Q ss_pred CCeEEEEeC-CCceeEEeCCc--CeeeEEEc-----CCCCeEEEEccCCCCCcEEEEECCCCeEEEeeeCC------Cee
Q 020756 105 PASATIFNK-KCRPILELGSG--PYNTVRWN-----PKGKFLCLAGFGNLPGDMAFWDYVDGKQLGTTRAE------CSV 170 (321)
Q Consensus 105 ~~~i~i~d~-~~~~~~~~~~~--~~~~~~~s-----PdG~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~~------~~~ 170 (321)
...++++.. +.+..+..-+. .+..+.+- ..+..|++-. .+|.|++|-+=..+.+.....+ .+.
T Consensus 234 e~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~---~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~ 310 (395)
T PF08596_consen 234 ESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF---NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLS 310 (395)
T ss_dssp SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE---TTSEEEEEETTT--EEEEEE-SS---HHHHT
T ss_pred ccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE---CCCcEEEEECCCchHhhcccCCCcccccccc
Confidence 457888876 33333332122 22234442 2344444444 5699999999888888777664 234
Q ss_pred eEEEccCCCEEEEEEcCCceeecCcEEEEeecCc
Q 020756 171 TSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGS 204 (321)
Q Consensus 171 ~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~ 204 (321)
..+++++|..++..+ ...+.++.+.++
T Consensus 311 ~ssis~~Gdi~~~~g-------psE~~l~sv~~~ 337 (395)
T PF08596_consen 311 SSSISRNGDIFYWTG-------PSEIQLFSVWGE 337 (395)
T ss_dssp T-EE-TTS-EEEE-S-------SSEEEEEEEES-
T ss_pred ccEECCCCCEEEEeC-------cccEEEEEEEcc
Confidence 478899999887776 667777776444
No 476
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=43.10 E-value=2.5e+02 Score=25.31 Aligned_cols=157 Identities=16% Similarity=0.143 Sum_probs=82.7
Q ss_pred ecceeEEEEEcCCC-ceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCC-CceeEEeC-CcCeeeEEEcCCC
Q 020756 59 YGESKLNYLTTDGT-HEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKK-CRPILELG-SGPYNTVRWNPKG 135 (321)
Q Consensus 59 ~g~~~l~~l~~~g~-~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~-~~~~~~~~-~~~~~~~~~sPdG 135 (321)
||.+.|..++...+ ....+.++...--..+..- ++.|... .-..+...+||.. .+.+.+|. .+.-.-++ .||
T Consensus 65 yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qL-TWk~~~~f~yd~~tl~~~~~~~y~~EGWGLt--~dg 139 (264)
T PF05096_consen 65 YGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQL-TWKEGTGFVYDPNTLKKIGTFPYPGEGWGLT--SDG 139 (264)
T ss_dssp TTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEE-ESSSSEEEEEETTTTEEEEEEE-SSS--EEE--ECS
T ss_pred CCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEE-EecCCeEEEEccccceEEEEEecCCcceEEE--cCC
Confidence 57788888887654 3345555543322333333 3334333 2556788899985 45566661 22222233 567
Q ss_pred CeEEEEccCCCCCcEEEEECCCCeEEEeeeC---C----CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee-cCceeE
Q 020756 136 KFLCLAGFGNLPGDMAFWDYVDGKQLGTTRA---E----CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH-NGSLFF 207 (321)
Q Consensus 136 ~~l~~~g~~n~~g~i~iwD~~~~~~i~~~~~---~----~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~-~g~~l~ 207 (321)
+.|+.+. ....|+++|..+.+.+..+.- . .+..++|- +|...|=.= ..+.|..-|. +|+.+.
T Consensus 140 ~~Li~SD---GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW------~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 140 KRLIMSD---GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW------QTDRIVRIDPETGKVVG 209 (264)
T ss_dssp SCEEEE----SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET------TSSEEEEEETTT-BEEE
T ss_pred CEEEEEC---CccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC------CCCeEEEEeCCCCeEEE
Confidence 7777776 457899999988765544332 1 45557775 565333222 2444444454 343321
Q ss_pred Ee-----------------ccCceEEEEEecCCCCCCCCc
Q 020756 208 KK-----------------MFDKLFQAEWKPVSPDKFGDI 230 (321)
Q Consensus 208 ~~-----------------~~~~~~~~~w~P~~~~~~~~~ 230 (321)
.. ..+.+..++|.|....++-..
T Consensus 210 ~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 210 WIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 11 124578899999888777554
No 477
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=41.77 E-value=4.8e+02 Score=28.18 Aligned_cols=167 Identities=14% Similarity=0.119 Sum_probs=86.9
Q ss_pred ceEEEEEcCCcCCCCceeeeecccC----ccceEEeCCC-CCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeee-
Q 020756 5 ASVQIYACGKDLQSQPLARRSFFRC----STVQLNWNRG-STGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVP- 78 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~~~~f~~----~~~~~~Wsp~-G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~- 78 (321)
+.+++++-.+ -+.++...|-.- ..+...+..| ++++++-+.--....+..-.|-.-+|.+.- +..-+.+.
T Consensus 750 s~l~vlD~nT---f~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e-~~~L~~v~e 825 (1096)
T KOG1897|consen 750 SFLRVLDQNT---FEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE-LNSLELVAE 825 (1096)
T ss_pred EEEEEecCCc---eeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec-CCceeeeee
Confidence 3566666555 234433333221 2223445555 777777654322222222234444555544 22222222
Q ss_pred cCCCCCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeEEe---CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEE--
Q 020756 79 LRKEGPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPILEL---GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFW-- 153 (321)
Q Consensus 79 l~~~~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~~~---~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iw-- 153 (321)
..-+|.++++.-- +|+.+|.+ ...++||+...+..... +..++..+...-.|.+|+++. ..+.+.+.
T Consensus 826 ~~v~Gav~aL~~f-ngkllA~I----n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgD---lm~Sitll~y 897 (1096)
T KOG1897|consen 826 TVVKGAVYALVEF-NGKLLAGI----NQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGD---LMRSITLLQY 897 (1096)
T ss_pred eeeccceeehhhh-CCeEEEec----CcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEee---ccceEEEEEE
Confidence 1225666554332 57777765 34899999865522222 466778888888999999998 66666554
Q ss_pred ECCCCeEEEee---eCCCeeeEEEccCCCEEEE
Q 020756 154 DYVDGKQLGTT---RAECSVTSEWSPDGRYFMT 183 (321)
Q Consensus 154 D~~~~~~i~~~---~~~~~~~~~wSpdG~~l~t 183 (321)
+...|..+-.- ...+.+.++.--+..|+.+
T Consensus 898 ~~~eg~f~evArD~~p~Wmtaveil~~d~ylga 930 (1096)
T KOG1897|consen 898 KGDEGNFEEVARDYNPNWMTAVEILDDDTYLGA 930 (1096)
T ss_pred eccCCceEEeehhhCccceeeEEEecCceEEee
Confidence 44443232221 1125566665555555443
No 478
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=40.97 E-value=6.6 Score=21.31 Aligned_cols=8 Identities=63% Similarity=1.219 Sum_probs=6.5
Q ss_pred EEccCCCE
Q 020756 173 EWSPDGRY 180 (321)
Q Consensus 173 ~wSpdG~~ 180 (321)
.|||+|++
T Consensus 7 ~FSp~Grl 14 (23)
T PF10584_consen 7 TFSPDGRL 14 (23)
T ss_dssp SBBTTSSB
T ss_pred eECCCCeE
Confidence 58999986
No 479
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=40.65 E-value=3.2e+02 Score=25.73 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=18.9
Q ss_pred CCeEEEEccCCCCCcEEEEECCCCeEEEe
Q 020756 135 GKFLCLAGFGNLPGDMAFWDYVDGKQLGT 163 (321)
Q Consensus 135 G~~l~~~g~~n~~g~i~iwD~~~~~~i~~ 163 (321)
+..|++++ .+|.++.+|..+++.+=.
T Consensus 256 ~~~vy~~~---~~g~l~ald~~tG~~~W~ 281 (394)
T PRK11138 256 GGVVYALA---YNGNLVALDLRSGQIVWK 281 (394)
T ss_pred CCEEEEEE---cCCeEEEEECCCCCEEEe
Confidence 55666665 678999999999876543
No 480
>PHA03098 kelch-like protein; Provisional
Probab=40.57 E-value=2.7e+02 Score=27.51 Aligned_cols=96 Identities=9% Similarity=0.047 Sum_probs=47.3
Q ss_pred eEEEEeCCCceeEEeCC---cCeeeEEEcCCCCeEEEEccCC--CCCcEEEEECCCCe--EEEeeeCCCeeeEEEccCCC
Q 020756 107 SATIFNKKCRPILELGS---GPYNTVRWNPKGKFLCLAGFGN--LPGDMAFWDYVDGK--QLGTTRAECSVTSEWSPDGR 179 (321)
Q Consensus 107 ~i~i~d~~~~~~~~~~~---~~~~~~~~sPdG~~l~~~g~~n--~~g~i~iwD~~~~~--~i~~~~~~~~~~~~wSpdG~ 179 (321)
.+..||...+.+..+.. .........-+|+..+++|..+ ....++.||..+.+ .+..+.........-.-+|+
T Consensus 312 ~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~ 391 (534)
T PHA03098 312 SVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNL 391 (534)
T ss_pred cEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCE
Confidence 57788887777766522 1111222223677888888542 13468889987653 22222222111112234667
Q ss_pred EEEEEEcCCceeecCcEEEEeec
Q 020756 180 YFMTATTAPRLQIDNGIKIFHHN 202 (321)
Q Consensus 180 ~l~t~~s~~rl~~d~~v~iw~~~ 202 (321)
.++.|+.......-+.+..||..
T Consensus 392 iYv~GG~~~~~~~~~~v~~yd~~ 414 (534)
T PHA03098 392 IYVIGGISKNDELLKTVECFSLN 414 (534)
T ss_pred EEEECCcCCCCcccceEEEEeCC
Confidence 66666621100011446666653
No 481
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=40.08 E-value=2.8e+02 Score=25.01 Aligned_cols=107 Identities=12% Similarity=0.075 Sum_probs=57.6
Q ss_pred CCeEEEEECcCCCEEEEEEccCCCeEEEEeCCCceeE---EeCCcC-eeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756 83 GPVHDVQWSYSGSEFAVVYGFMPASATIFNKKCRPIL---ELGSGP-YNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 158 (321)
Q Consensus 83 ~~v~~~~wsP~g~~l~~~~g~~~~~i~i~d~~~~~~~---~~~~~~-~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~ 158 (321)
.-...+.|..+|..+-....+....+..+|+.+..+. .+.... -.-+... +++...+.= ..+...+||.++.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTW---k~~~~f~yd~~tl 120 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTW---KEGTGFVYDPNTL 120 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEES---SSSEEEEEETTTT
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEe---cCCeEEEEccccc
Confidence 3345677766665444432222237888998765332 232221 2223333 223333332 5689999999999
Q ss_pred eEEEeeeCC-CeeeEEEccCCCEEEEEEcCCceeecCcEEEEee
Q 020756 159 KQLGTTRAE-CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHH 201 (321)
Q Consensus 159 ~~i~~~~~~-~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~ 201 (321)
+.+..+... .-..++ .||..|+.+.. .+.++++|.
T Consensus 121 ~~~~~~~y~~EGWGLt--~dg~~Li~SDG------S~~L~~~dP 156 (264)
T PF05096_consen 121 KKIGTFPYPGEGWGLT--SDGKRLIMSDG------SSRLYFLDP 156 (264)
T ss_dssp EEEEEEE-SSS--EEE--ECSSCEEEE-S------SSEEEEE-T
T ss_pred eEEEEEecCCcceEEE--cCCCEEEEECC------ccceEEECC
Confidence 999988765 344444 67777776663 455555554
No 482
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=37.44 E-value=2.7e+02 Score=27.88 Aligned_cols=87 Identities=8% Similarity=0.095 Sum_probs=49.6
Q ss_pred EEEEEcCCCceeeeecCCCCCeEEEEECc----CCCEEEEEEccCCCeEEEEeCCCceeEE-e-C-CcCeeeEEEcCCCC
Q 020756 64 LNYLTTDGTHEGLVPLRKEGPVHDVQWSY----SGSEFAVVYGFMPASATIFNKKCRPILE-L-G-SGPYNTVRWNPKGK 136 (321)
Q Consensus 64 l~~l~~~g~~~~~v~l~~~~~v~~~~wsP----~g~~l~~~~g~~~~~i~i~d~~~~~~~~-~-~-~~~~~~~~~sPdG~ 136 (321)
++.|+..-...+......++.+.--.||. .+.++|++ ...|.|++||.-+..-.+ + + ...+..+..+-+|+
T Consensus 539 vFrIDPR~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~a--s~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk 616 (776)
T COG5167 539 VFRIDPRARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAA--SRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGK 616 (776)
T ss_pred eEEecccccCCceeeeeehhccccccccccccccCceEEEe--cCCCceeeehhhcchhhhcCcccccceeeeEeecCCc
Confidence 56665322112222223334444444543 33467774 667899999974432222 2 1 34577788899999
Q ss_pred eEEEEccCCCCCcEEEEECC
Q 020756 137 FLCLAGFGNLPGDMAFWDYV 156 (321)
Q Consensus 137 ~l~~~g~~n~~g~i~iwD~~ 156 (321)
+|+.++ ...|.+.|+.
T Consensus 617 ~ilaTC----k~yllL~d~~ 632 (776)
T COG5167 617 HILATC----KNYLLLTDVP 632 (776)
T ss_pred EEEEee----cceEEEEecc
Confidence 988764 3567777754
No 483
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=36.19 E-value=1.6e+02 Score=30.83 Aligned_cols=57 Identities=16% Similarity=0.200 Sum_probs=39.5
Q ss_pred EEEcCCCCeEEEEccCC------CCCcEEEEECCCCe-EEEeee-CCCeeeEEEccCCCEEEEEE
Q 020756 129 VRWNPKGKFLCLAGFGN------LPGDMAFWDYVDGK-QLGTTR-AECSVTSEWSPDGRYFMTAT 185 (321)
Q Consensus 129 ~~~sPdG~~l~~~g~~n------~~g~i~iwD~~~~~-~i~~~~-~~~~~~~~wSpdG~~l~t~~ 185 (321)
...+||..+++++...+ ..+...++++.++. .+.... ...+..+.|||.|..++..-
T Consensus 102 ~~~s~d~~~~~~~~~~~~~~rhs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wsp~~~~l~yv~ 166 (755)
T KOG2100|consen 102 DLISPDRKYILLGRNYKKRFRHSYTAKYHLYDLNTGEKLHPPEYEGSKIQYASWSPLGNDLAYVL 166 (755)
T ss_pred cccChhhhhheeccCcccccceeeEEEEEEEEcCCCCcccCcccCCCeeEEEEEcCCCCEEEEEE
Confidence 47789999888876321 23567788888776 222222 22557799999999999887
No 484
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=35.70 E-value=3.4e+02 Score=24.62 Aligned_cols=184 Identities=16% Similarity=0.257 Sum_probs=96.1
Q ss_pred ceEEEEEcCCcCCCCceeeeecccCccceEE--eCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecC--
Q 020756 5 ASVQIYACGKDLQSQPLARRSFFRCSTVQLN--WNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLR-- 80 (321)
Q Consensus 5 ~~v~v~~~~~~~~~~~i~~~~~f~~~~~~~~--Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~-- 80 (321)
+-++||++.- +.+....+.+-..+++. |.-.|+.|-+.+.++ ++... ..+|.|+-+.+....+.-.
T Consensus 77 ~Gl~VYDLsG----kqLqs~~~Gk~NNVDLrygF~LgG~~idiaaASd--R~~~~----i~~y~Idp~~~~L~sitD~n~ 146 (364)
T COG4247 77 AGLRVYDLSG----KQLQSVNPGKYNNVDLRYGFQLGGQSIDIAAASD--RQNDK----IVFYKIDPNPQYLESITDSNA 146 (364)
T ss_pred CCeEEEecCC----CeeeecCCCcccccccccCcccCCeEEEEEeccc--ccCCe----EEEEEeCCCccceeeccCCCC
Confidence 4468888854 66777777776666665 456677776665433 33322 2255554444322222211
Q ss_pred ----CCCCeEEEEE--CcC-CCEEEEEEccCCCeEEEEeC--------CCceeEEe--CCcCeeeEEEcCCCCeEEEEcc
Q 020756 81 ----KEGPVHDVQW--SYS-GSEFAVVYGFMPASATIFNK--------KCRPILEL--GSGPYNTVRWNPKGKFLCLAGF 143 (321)
Q Consensus 81 ----~~~~v~~~~w--sP~-g~~l~~~~g~~~~~i~i~d~--------~~~~~~~~--~~~~~~~~~~sPdG~~l~~~g~ 143 (321)
....++.++. ||. |.+.+++.+ ..+.+.-|.+ .++.++.| ....-.+++=.-.| +|..+-
T Consensus 147 p~ss~~s~~YGl~lyrs~ktgd~yvfV~~-~qG~~~Qy~l~d~gnGkv~~k~vR~fk~~tQTEG~VaDdEtG-~LYIae- 223 (364)
T COG4247 147 PYSSSSSSAYGLALYRSPKTGDYYVFVNR-RQGDIAQYKLIDQGNGKVGTKLVRQFKIPTQTEGMVADDETG-FLYIAE- 223 (364)
T ss_pred ccccCcccceeeEEEecCCcCcEEEEEec-CCCceeEEEEEecCCceEcceeeEeeecCCcccceeeccccc-eEEEee-
Confidence 1223444444 564 776666643 4566666654 12344444 22111112111111 233322
Q ss_pred CCCCCcEEEEECC-------CCeEEEeeeCC-------CeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEe
Q 020756 144 GNLPGDMAFWDYV-------DGKQLGTTRAE-------CSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKK 209 (321)
Q Consensus 144 ~n~~g~i~iwD~~-------~~~~i~~~~~~-------~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~ 209 (321)
-.+-||.+. +++.+...... .-..+-+.|+|+-.+.+++. ..|++-.|...|..-|..
T Consensus 224 ----EdvaiWK~~Aep~~G~~g~~idr~~d~~~LtdDvEGltiYy~pnGkGYL~aSSQ----GnNtya~y~ReG~N~YVg 295 (364)
T COG4247 224 ----EDVAIWKYEAEPNRGNTGRLIDRIKDLSYLTDDVEGLTIYYGPNGKGYLLASSQ----GNNTYAAYTREGNNDYVG 295 (364)
T ss_pred ----ccceeeecccCCCCCCccchhhhhcCchhhcccccccEEEEcCCCcEEEEEecC----CCceEEEEEeeCCCceEE
Confidence 356677654 23444433331 33457899999877777763 577888888777655443
No 485
>PRK13613 lipoprotein LpqB; Provisional
Probab=34.79 E-value=5.1e+02 Score=26.41 Aligned_cols=120 Identities=16% Similarity=0.147 Sum_probs=66.5
Q ss_pred CCCeEEEEECcCCCEEEEEEccCCC--eEEEEeCCCceeE----EeCCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEEC
Q 020756 82 EGPVHDVQWSYSGSEFAVVYGFMPA--SATIFNKKCRPIL----ELGSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDY 155 (321)
Q Consensus 82 ~~~v~~~~wsP~g~~l~~~~g~~~~--~i~i~d~~~~~~~----~~~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~ 155 (321)
...+....|.++|. +=++.+..++ .+.++.-.+.... .+....|..++.|+||-.+++..-.+..+.|+|=-+
T Consensus 408 ~~~Lt~PS~d~~g~-vWtvd~~~~~~~vl~v~~~~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V 486 (599)
T PRK13613 408 DGRLTSPSWDGRGD-LWVVDRDPADPRLLWLLQGDGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRI 486 (599)
T ss_pred cCcccCCcCcCCCC-EEEecCCCCCceEEEEEcCCCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEE
Confidence 44577788888884 3333232233 2555544333321 122237999999999998887542223456655322
Q ss_pred C---CCe-EEEeee-----CCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecCce
Q 020756 156 V---DGK-QLGTTR-----AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSL 205 (321)
Q Consensus 156 ~---~~~-~i~~~~-----~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~ 205 (321)
. .+. .+..+. ...+.+++|..++.+++.+.+.+ .+..+.+-+++|..
T Consensus 487 ~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~sL~Vlg~~~~---~~~~v~~v~vdG~~ 542 (599)
T PRK13613 487 VRDAKAVVSVEEFRSLAPELEDVTDMSWAGDSQLVVLGREEG---GVQQARYVQVDGST 542 (599)
T ss_pred EeCCCCcEEeeccEEeccCCCccceeEEcCCCEEEEEeccCC---CCcceEEEecCCcC
Confidence 2 232 222111 11578899999999888675421 13345555566643
No 486
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=33.80 E-value=90 Score=17.44 Aligned_cols=23 Identities=17% Similarity=0.157 Sum_probs=16.6
Q ss_pred eEEEEccCCCCCcEEEEECCCCeEEE
Q 020756 137 FLCLAGFGNLPGDMAFWDYVDGKQLG 162 (321)
Q Consensus 137 ~l~~~g~~n~~g~i~iwD~~~~~~i~ 162 (321)
.|++++ .+|.|..+|.++|+.+=
T Consensus 8 ~v~~~~---~~g~l~a~d~~~G~~~W 30 (33)
T smart00564 8 TVYVGS---TDGTLYALDAKTGEILW 30 (33)
T ss_pred EEEEEc---CCCEEEEEEcccCcEEE
Confidence 455555 67899999988887553
No 487
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=32.97 E-value=4.9e+02 Score=25.68 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=30.8
Q ss_pred CCcEEEEECCCCeEEEeee-CCCeeeEEEccCCCEEEEEEcCCceeecCcEEEEeecC
Q 020756 147 PGDMAFWDYVDGKQLGTTR-AECSVTSEWSPDGRYFMTATTAPRLQIDNGIKIFHHNG 203 (321)
Q Consensus 147 ~g~i~iwD~~~~~~i~~~~-~~~~~~~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g 203 (321)
.|++.++.....+.+-... ...+..+++||.+.++++-. .++++++.++.
T Consensus 337 ~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~Ll~e~-------~gki~~~~l~N 387 (733)
T COG4590 337 NGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYLLSED-------QGKIRLAQLEN 387 (733)
T ss_pred CCceeeeecccCcceehhhhhcCcceeeeCcccchheeec-------CCceEEEEecC
Confidence 4555555443333222111 12556689999999998876 67888887754
No 488
>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]
Probab=30.08 E-value=1.4e+02 Score=28.65 Aligned_cols=68 Identities=10% Similarity=0.147 Sum_probs=0.0
Q ss_pred eEEeCCCCCeeEEEEEec-------ccCCCce---eecceeEEEEEcCCCceeeeecCCCCCeEEEEECcC-CCEEEEEE
Q 020756 33 QLNWNRGSTGLLAVAQSD-------VDKTNQS---YYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYS-GSEFAVVY 101 (321)
Q Consensus 33 ~~~Wsp~G~~l~~~~~~d-------~d~t~~s---~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~-g~~l~~~~ 101 (321)
.+.|+||| +|++.+... ...+-.- ......+..++..+.....+...|..++ .++|+|- |...++..
T Consensus 181 ~l~f~pDG-~Lyvs~G~~~~~~~aq~~~~~~Gk~~r~~~a~~~~~d~p~~~~~i~s~G~RN~q-Gl~w~P~tg~Lw~~e~ 258 (399)
T COG2133 181 RLVFGPDG-KLYVTTGSNGDPALAQDNVSLAGKVLRIDRAGIIPADNPFPNSEIWSYGHRNPQ-GLAWHPVTGALWTTEH 258 (399)
T ss_pred cEEECCCC-cEEEEeCCCCCcccccCccccccceeeeccCcccccCCCCCCcceEEeccCCcc-ceeecCCCCcEEEEec
Q ss_pred c
Q 020756 102 G 102 (321)
Q Consensus 102 g 102 (321)
|
T Consensus 259 g 259 (399)
T COG2133 259 G 259 (399)
T ss_pred C
No 489
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=29.87 E-value=76 Score=21.16 Aligned_cols=15 Identities=13% Similarity=0.317 Sum_probs=11.5
Q ss_pred eEEEcCCCCeEEEEc
Q 020756 128 TVRWNPKGKFLCLAG 142 (321)
Q Consensus 128 ~~~~sPdG~~l~~~g 142 (321)
-+..+++|++|+.+.
T Consensus 35 i~Y~~~dg~yli~G~ 49 (57)
T PF10411_consen 35 ILYVDEDGRYLIQGQ 49 (57)
T ss_dssp EEEEETTSSEEEES-
T ss_pred EEEEcCCCCEEEEeE
Confidence 567788999998864
No 490
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=29.21 E-value=1.1e+02 Score=19.18 Aligned_cols=28 Identities=21% Similarity=0.343 Sum_probs=19.2
Q ss_pred EcCCCCeEEEEcc--CC---CCCcEEEEECCCC
Q 020756 131 WNPKGKFLCLAGF--GN---LPGDMAFWDYVDG 158 (321)
Q Consensus 131 ~sPdG~~l~~~g~--~n---~~g~i~iwD~~~~ 158 (321)
-.+++++++++|. .+ ....+.+||+++.
T Consensus 8 ~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~ 40 (49)
T PF07646_consen 8 VVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETN 40 (49)
T ss_pred EEECCEEEEECCcccCCCCcccceeEEEECCCC
Confidence 3567888888887 22 2357888888765
No 491
>COG4247 Phy 3-phytase (myo-inositol-hexaphosphate 3-phosphohydrolase) [Lipid metabolism]
Probab=29.11 E-value=73 Score=28.72 Aligned_cols=42 Identities=14% Similarity=0.253 Sum_probs=30.1
Q ss_pred EEEccCCCEEEEEEcCCceeecCcEEEEeecCceeEEeccCceEEEEE
Q 020756 172 SEWSPDGRYFMTATTAPRLQIDNGIKIFHHNGSLFFKKMFDKLFQAEW 219 (321)
Q Consensus 172 ~~wSpdG~~l~t~~s~~rl~~d~~v~iw~~~g~~l~~~~~~~~~~~~w 219 (321)
-.=.|+-..+++.. ...++++||++|+++.......+.++..
T Consensus 61 h~t~P~kS~vItt~------Kk~Gl~VYDLsGkqLqs~~~Gk~NNVDL 102 (364)
T COG4247 61 HATNPDKSLVITTV------KKAGLRVYDLSGKQLQSVNPGKYNNVDL 102 (364)
T ss_pred ccCCcCcceEEEee------ccCCeEEEecCCCeeeecCCCccccccc
Confidence 34467767677666 3788999999999997776665555443
No 492
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=28.71 E-value=1.8e+02 Score=28.84 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=20.2
Q ss_pred eeEEEcc----CCCEEEEEEcCCceeecCcEEEEeecCce
Q 020756 170 VTSEWSP----DGRYFMTATTAPRLQIDNGIKIFHHNGSL 205 (321)
Q Consensus 170 ~~~~wSp----dG~~l~t~~s~~rl~~d~~v~iw~~~g~~ 205 (321)
..+..++ +..++++.+ .|+.+||||+....
T Consensus 218 ~~~~~~~~~~~~~~~l~tl~------~D~~LRiW~l~t~~ 251 (547)
T PF11715_consen 218 ASLAVSSSEINDDTFLFTLS------RDHTLRIWSLETGQ 251 (547)
T ss_dssp EEEEE-----ETTTEEEEEE------TTSEEEEEETTTTC
T ss_pred ceEEEecceeCCCCEEEEEe------CCCeEEEEECCCCe
Confidence 4456666 667777777 59999999995443
No 493
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=28.51 E-value=73 Score=19.91 Aligned_cols=28 Identities=11% Similarity=0.138 Sum_probs=15.5
Q ss_pred cCCCCeEEEEccCC---CCCcEEEEECCCCe
Q 020756 132 NPKGKFLCLAGFGN---LPGDMAFWDYVDGK 159 (321)
Q Consensus 132 sPdG~~l~~~g~~n---~~g~i~iwD~~~~~ 159 (321)
.+++++++++|... .-.++++||+.+++
T Consensus 10 ~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~ 40 (49)
T PF13418_consen 10 IGDNSIYVFGGRDSSGSPLNDLWIFDIETNT 40 (49)
T ss_dssp E-TTEEEEE--EEE-TEE---EEEEETTTTE
T ss_pred EeCCeEEEECCCCCCCcccCCEEEEECCCCE
Confidence 45677888887532 22478899988764
No 494
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=28.44 E-value=3e+02 Score=25.08 Aligned_cols=68 Identities=15% Similarity=0.059 Sum_probs=0.0
Q ss_pred ceEEeCC----CCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEEccCCCe
Q 020756 32 VQLNWNR----GSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVYGFMPAS 107 (321)
Q Consensus 32 ~~~~Wsp----~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~g~~~~~ 107 (321)
+...|+. +|++|++. .+.+||.++..+.......+....+|+.+...+.-+.|+++ .+....
T Consensus 1 ~~~~~~~~~~~~~~~lL~G-------------Te~Gly~~~~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~L-sgk~~~ 66 (302)
T smart00036 1 NTAKWNHPITCDGKWLLVG-------------TEEGLYVLNISDQPGTLEKLIGRRSVTQIWVLEENNVLLMI-SGKKPQ 66 (302)
T ss_pred CCceEccccccCCcEEEEE-------------eCCceEEEEcccCCCCeEEecCcCceEEEEEEhhhCEEEEE-eCCcce
Q ss_pred EEEEeC
Q 020756 108 ATIFNK 113 (321)
Q Consensus 108 i~i~d~ 113 (321)
++.|++
T Consensus 67 L~~~~L 72 (302)
T smart00036 67 LYSHPL 72 (302)
T ss_pred EEEEEH
No 495
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=28.10 E-value=1.9e+02 Score=19.31 Aligned_cols=19 Identities=21% Similarity=0.162 Sum_probs=15.1
Q ss_pred eeeEEEcCCCCeEEEEccC
Q 020756 126 YNTVRWNPKGKFLCLAGFG 144 (321)
Q Consensus 126 ~~~~~~sPdG~~l~~~g~~ 144 (321)
+..+..-|||+.|+.+.+.
T Consensus 3 ~~~~~~q~DGkIlv~G~~~ 21 (55)
T TIGR02608 3 AYAVAVQSDGKILVAGYVD 21 (55)
T ss_pred eEEEEECCCCcEEEEEEee
Confidence 4678888999999998753
No 496
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=27.50 E-value=3e+02 Score=21.50 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=12.2
Q ss_pred eeEEEccCCCEEEEEE
Q 020756 170 VTSEWSPDGRYFMTAT 185 (321)
Q Consensus 170 ~~~~wSpdG~~l~t~~ 185 (321)
..-.|||||++|-+..
T Consensus 71 HvHvfSpDG~~lSFTY 86 (122)
T PF12566_consen 71 HVHVFSPDGSWLSFTY 86 (122)
T ss_pred cceEECCCCCEEEEEe
Confidence 3357999999887766
No 497
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=27.26 E-value=1.2e+02 Score=16.78 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=13.6
Q ss_pred eEEEEECcCCCEEEEEEccCCCeEEEE
Q 020756 85 VHDVQWSYSGSEFAVVYGFMPASATIF 111 (321)
Q Consensus 85 v~~~~wsP~g~~l~~~~g~~~~~i~i~ 111 (321)
.++++.+++|+.+++ ......|.+|
T Consensus 4 P~gvav~~~g~i~Va--D~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVA--DSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEE--ECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEE--ECCCCEEEEC
Confidence 356777766654443 2444466554
No 498
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=26.34 E-value=7.4e+02 Score=25.59 Aligned_cols=126 Identities=12% Similarity=0.108 Sum_probs=68.7
Q ss_pred eeeecccCccceEEeCCCCCeeEEEEEecccCCCceeecceeEEEEEcCCCceeeeecCCCCCeEEEEECcCCCEEEEEE
Q 020756 22 ARRSFFRCSTVQLNWNRGSTGLLAVAQSDVDKTNQSYYGESKLNYLTTDGTHEGLVPLRKEGPVHDVQWSYSGSEFAVVY 101 (321)
Q Consensus 22 ~~~~~f~~~~~~~~Wsp~G~~l~~~~~~d~d~t~~s~~g~~~l~~l~~~g~~~~~v~l~~~~~v~~~~wsP~g~~l~~~~ 101 (321)
.-+.||.-. .+.-|||+++++.. +|-.|...|. |..-++..+ ..+...-.+....+.|.+|++.|....
T Consensus 124 ~g~~f~~Lg--~~~~s~D~~~la~s----~D~~G~e~y~---lr~kdL~tg--~~~~d~i~~~~~~~~Wa~d~~~lfYt~ 192 (682)
T COG1770 124 EGHDFFSLG--AASISPDHNLLAYS----VDVLGDEQYT---LRFKDLATG--EELPDEITNTSGSFAWAADGKTLFYTR 192 (682)
T ss_pred Ccccceeee--eeeeCCCCceEEEE----EecccccEEE---EEEEecccc--cccchhhcccccceEEecCCCeEEEEE
Confidence 334555433 44568999999886 4445554442 333333332 122222334567899999999887764
Q ss_pred cc---CCCeEEEEeCCC-----ceeEEe-CCcCeeeEEEcCCCCeEEEEccCCCCCcEEEEECCCC
Q 020756 102 GF---MPASATIFNKKC-----RPILEL-GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAFWDYVDG 158 (321)
Q Consensus 102 g~---~~~~i~i~d~~~-----~~~~~~-~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~iwD~~~~ 158 (321)
-. .+.++....+.+ +.+..- .......+.=+-..++|++....-..+.+++.|.+..
T Consensus 193 ~d~~~rp~kv~~h~~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p 258 (682)
T COG1770 193 LDENHRPDKVWRHRLGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDP 258 (682)
T ss_pred EcCCCCcceEEEEecCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCC
Confidence 32 223444334433 123332 2334445666667777777542223467888887653
No 499
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=26.28 E-value=1.4e+02 Score=17.66 Aligned_cols=21 Identities=24% Similarity=0.121 Sum_probs=16.3
Q ss_pred CCCcEEEEECCCCeEEEeeeC
Q 020756 146 LPGDMAFWDYVDGKQLGTTRA 166 (321)
Q Consensus 146 ~~g~i~iwD~~~~~~i~~~~~ 166 (321)
.+|.|+-+|.++|+.+=.+..
T Consensus 8 ~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 8 PDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp TTSEEEEEETTTTSEEEEEES
T ss_pred CCCEEEEEECCCCCEEEeeeC
Confidence 778899899988887755544
No 500
>PRK13613 lipoprotein LpqB; Provisional
Probab=25.47 E-value=7.3e+02 Score=25.29 Aligned_cols=73 Identities=14% Similarity=0.078 Sum_probs=46.2
Q ss_pred CeEEEEECcCCCEEEEEEccC-CCeEEEEeC----CCc-eeE---Ee--CCcCeeeEEEcCCCCeEEEEccCCCCCcEEE
Q 020756 84 PVHDVQWSYSGSEFAVVYGFM-PASATIFNK----KCR-PIL---EL--GSGPYNTVRWNPKGKFLCLAGFGNLPGDMAF 152 (321)
Q Consensus 84 ~v~~~~wsP~g~~l~~~~g~~-~~~i~i~d~----~~~-~~~---~~--~~~~~~~~~~sPdG~~l~~~g~~n~~g~i~i 152 (321)
.|..++.|+||-.++++.+.. .+++.|--+ .+. .+. .+ ....+..+.|..++++++++.....+..+++
T Consensus 456 ~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l~~v~~~~W~~~~sL~Vlg~~~~~~~~v~~ 535 (599)
T PRK13613 456 RVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPELEDVTDMSWAGDSQLVVLGREEGGVQQARY 535 (599)
T ss_pred EeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCCCccceeEEcCCCEEEEEeccCCCCcceEE
Confidence 899999999999999876432 235555433 232 111 12 3345789999999998887632112345666
Q ss_pred EECC
Q 020756 153 WDYV 156 (321)
Q Consensus 153 wD~~ 156 (321)
..+.
T Consensus 536 v~vd 539 (599)
T PRK13613 536 VQVD 539 (599)
T ss_pred EecC
Confidence 5664
Done!