BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020759
(321 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VDH1|FBX21_MOUSE F-box only protein 21 OS=Mus musculus GN=Fbxo21 PE=2 SV=1
Length = 627
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQLL 259
+ +G + HK +GY VI G DP C W+ V L G QPFY +L
Sbjct: 503 YSIGLVMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNVL 554
>sp|Q5R5S1|FBX21_PONAB F-box only protein 21 OS=Pongo abelii GN=FBXO21 PE=2 SV=1
Length = 621
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQLL 259
+ +G + HK +GY VI G DP C W+ V L G QPFY +L
Sbjct: 496 YSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNVL 547
>sp|O94952|FBX21_HUMAN F-box only protein 21 OS=Homo sapiens GN=FBXO21 PE=2 SV=2
Length = 628
Score = 48.9 bits (115), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 26/52 (50%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQLL 259
+ +G + HK +GY VI G DP C W+ V L G QPFY +L
Sbjct: 503 YSIGLIMKHKRYGYNCVIYGWDPTCMMGHEWIRNMNVHSLPHGHHQPFYNVL 554
>sp|P47319|UVRB_MYCGE UvrABC system protein B OS=Mycoplasma genitalium (strain ATCC 33530
/ G-37 / NCTC 10195) GN=uvrB PE=3 SV=1
Length = 656
Score = 37.0 bits (84), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 145 LSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAE 190
L +KS A+ A I +L +++KA ++NY LA ++RD I +LE E
Sbjct: 604 LKAKSNAEKNAALIKQLTKEMKKAAANQNYELAIEIRDSIFELEKE 649
>sp|Q6D6C5|HSPQ_ERWCT Heat shock protein HspQ OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=hspQ PE=3 SV=1
Length = 102
Score = 37.0 bits (84), Expect = 0.20, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDP-VCCESSSWMEIAQVEKLQQGPSQPFYQLL 259
F LGQ++ HK+ G+ VI +DP E+ +W EI+ + + S+P+Y ++
Sbjct: 6 FGLGQQIRHKLLGFPGVIIDIDPEYSLETPTWEEISGNDTPR---SEPWYHVV 55
>sp|Q8D251|HSPQ_WIGBR Heat shock protein HspQ OS=Wigglesworthia glossinidia brevipalpis
GN=hspQ PE=3 SV=2
Length = 105
Score = 35.8 bits (81), Expect = 0.48, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDP-VCCESSSWMEIAQVEKLQQGP 251
F +GQ+V HK+ GY VI +DP E S EI+ + L++ P
Sbjct: 6 FGIGQQVRHKLLGYLGVIIDVDPEYSLEKPSLEEISADDSLRRSP 50
>sp|P75558|UVRB_MYCPN UvrABC system protein B OS=Mycoplasma pneumoniae (strain ATCC 29342
/ M129) GN=uvrB PE=3 SV=1
Length = 657
Score = 35.4 bits (80), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 109 VQCALNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKA 168
+Q A N + + ++ +T L L +KS Q KA I +L ++++A
Sbjct: 578 IQMAYNEQHHKTPMTVQKPIT---------LNQPIKLKTKSSEQQKAALIKQLTKEMKQA 628
Query: 169 IDSENYALAADLRDQICKLEAE 190
++NY LA ++RD I +LE +
Sbjct: 629 AANQNYELAIEIRDSIFELEKQ 650
>sp|C6DKX0|HSPQ_PECCP Heat shock protein HspQ OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=hspQ PE=3 SV=1
Length = 102
Score = 35.4 bits (80), Expect = 0.59, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 32/53 (60%), Gaps = 4/53 (7%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDP-VCCESSSWMEIAQVEKLQQGPSQPFYQLL 259
F +GQ++ HK+ G+ V+ +DP E+ +W EI+ + + S+P+Y ++
Sbjct: 6 FGIGQQIRHKLLGFPGVVIDIDPEYSLETPTWEEISGNDTPR---SEPWYHVV 55
>sp|Q492P5|HSPQ_BLOPB Heat shock protein HspQ OS=Blochmannia pennsylvanicus (strain BPEN)
GN=hspQ PE=3 SV=1
Length = 105
Score = 34.7 bits (78), Expect = 0.89, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDP-VCCESSSWMEIAQVEKLQQGP 251
F +GQ+V HK+ GY VI +DP E + EI + + L++ P
Sbjct: 6 FGIGQQVRHKLLGYLGVIIDIDPEYSLEKPTLDEITKNDTLRKSP 50
>sp|Q2NU66|HSPQ_SODGM Heat shock protein HspQ OS=Sodalis glossinidius (strain morsitans)
GN=hspQ PE=3 SV=1
Length = 105
Score = 34.7 bits (78), Expect = 1.1, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDP-VCCESSSWMEIAQVEKLQQGP 251
F +GQ+V HK+ GY VI +DP E S +IA + L+ P
Sbjct: 6 FGIGQQVRHKLLGYLGVIIDVDPEYSLEKPSLDDIAADDSLRTAP 50
>sp|Q7VR10|HSPQ_BLOFL Heat shock protein HspQ OS=Blochmannia floridanus GN=hspQ PE=3 SV=1
Length = 105
Score = 34.3 bits (77), Expect = 1.2, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDP-VCCESSSWMEIAQVEKLQQGP 251
F++GQ+V HK+ GY V+ +DP E + E+ + + L++ P
Sbjct: 6 FKIGQQVRHKLLGYLGVVIDIDPEYSLEKPTLDEVTKNDSLRKFP 50
>sp|O31673|CLPE_BACSU ATP-dependent Clp protease ATP-binding subunit ClpE OS=Bacillus
subtilis (strain 168) GN=clpE PE=1 SV=1
Length = 699
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 152 QDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASA-TALAFE 202
+D A + + A+ KA++ ENY LAA LRD+ LE + ++SA TA+ E
Sbjct: 322 EDAAERLTAIEAEKTKALEEENYELAAKLRDEELALEKKLNSSSAHTAVTVE 373
>sp|Q1LT59|HSPQ_BAUCH Heat shock protein HspQ OS=Baumannia cicadellinicola subsp.
Homalodisca coagulata GN=hspQ PE=3 SV=1
Length = 105
Score = 34.3 bits (77), Expect = 1.3, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 208 FRLGQKVNHKIFGYRAVICGMDPVCCESSSWME-IAQVEKLQQGP 251
F +GQ+V HK+FGY VI +DP +++ IA + L+ P
Sbjct: 6 FGIGQQVRHKLFGYLGVIIDVDPEYSLDKPYIDKIAADDSLRTAP 50
>sp|A3PBT3|GLO2_PROM0 Hydroxyacylglutathione hydrolase OS=Prochlorococcus marinus (strain
MIT 9301) GN=gloB PE=3 SV=2
Length = 246
Score = 32.3 bits (72), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 9/71 (12%)
Query: 73 LFKGGSDRGLD-------ASSERSESANEDILFFFFQLDLATRVQCALNMEEYDIAQQLR 125
LF GG R + +S ER +S +D L + + + ALN++ D Q L+
Sbjct: 139 LFSGGCGRIFEGTYQQMYSSLERIKSLPKDTLIYCAHEYTKSNILWALNLKPKD--QDLK 196
Query: 126 NKLTEVEEEIS 136
NKL+EVE+++S
Sbjct: 197 NKLSEVEKKLS 207
>sp|Q15650|TRIP4_HUMAN Activating signal cointegrator 1 OS=Homo sapiens GN=TRIP4 PE=1 SV=4
Length = 581
Score = 32.0 bits (71), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 137 RQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAASA 196
++L K GL + +DK L R + ID E+ A+D + KLE E+L
Sbjct: 251 QELRIKSGLEKAIKHKDKLLEFDRTSIRRTQVIDDESDYFASDSNQWLSKLERETLQKRE 310
Query: 197 TALAFENARFAFRLGQKVNHKIFGYR 222
L R A RL +KV G +
Sbjct: 311 EEL--RELRHASRLSKKVTIDFAGRK 334
>sp|P70298|CUX2_MOUSE Homeobox protein cut-like 2 OS=Mus musculus GN=Cux2 PE=2 SV=2
Length = 1426
Score = 31.6 bits (70), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 7/74 (9%)
Query: 101 FQLDLATRVQCALNMEEYDI------AQQLRNKLTEVEEEISRQL-EAKRGLSSKSEAQD 153
F L R++ AL ++ +I AQQLR+ L E+EE + Q+ + +R L++KSEA +
Sbjct: 228 FALCSGPRLEAALASKDREILRLLKDAQQLRHSLQELEEVSANQIADLERQLAAKSEAIE 287
Query: 154 KALSIIRLRADLQK 167
K + +AD ++
Sbjct: 288 KLQEKLEAQADYEE 301
>sp|C0MBD7|UVRB_STRE4 UvrABC system protein B OS=Streptococcus equi subsp. equi (strain
4047) GN=uvrB PE=3 SV=1
Length = 663
Score = 31.2 bits (69), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 50/88 (56%), Gaps = 11/88 (12%)
Query: 109 VQCALNMEEYDIAQQLRNKLTEVEEEISRQLEAKRGLS-------SKSEAQDKALSIIRL 161
+Q A N E I Q ++ + ++ ISR +EAK + ++SE Q+ +I +L
Sbjct: 578 IQMAYNEEHGIIPQTIKKDIRDLIS-ISRAVEAKATEAETNYESMTRSERQE---AIKQL 633
Query: 162 RADLQKAIDSENYALAADLRDQICKLEA 189
+ ++Q+A + ++ LAA LRD I +L+A
Sbjct: 634 QKNMQEAAELLDFELAAQLRDLILELKA 661
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,933,454
Number of Sequences: 539616
Number of extensions: 3942530
Number of successful extensions: 11916
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 11872
Number of HSP's gapped (non-prelim): 128
length of query: 321
length of database: 191,569,459
effective HSP length: 117
effective length of query: 204
effective length of database: 128,434,387
effective search space: 26200614948
effective search space used: 26200614948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)