Query 020759
Match_columns 321
No_of_seqs 218 out of 521
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 07:46:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020759.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020759hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vbv_A Hypothetical protein B0 99.9 1.8E-26 6.1E-31 189.6 2.3 83 205-289 3-100 (105)
2 1e52_A Excinuclease ABC subuni 97.6 7E-05 2.4E-09 56.6 4.4 35 157-191 25-59 (63)
3 2d7d_A Uvrabc system protein B 95.3 0.0091 3.1E-07 60.9 3.5 35 156-190 626-660 (661)
4 1c4o_A DNA nucleotide excision 94.0 0.0098 3.3E-07 60.7 0.0 35 157-191 612-646 (664)
5 3pxg_A Negative regulator of g 74.3 8.3 0.00028 37.3 7.8 39 156-194 401-439 (468)
6 3he5_B Synzip2; heterodimeric 72.2 5.7 0.0002 28.3 4.5 30 154-191 18-47 (52)
7 3hht_B NitrIle hydratase beta 60.8 4.6 0.00016 37.0 2.8 56 203-264 137-205 (229)
8 3r8n_P 30S ribosomal protein S 49.3 8.7 0.0003 30.2 2.2 15 250-264 11-26 (82)
9 3qyh_B CO-type nitrIle hydrata 46.9 8.7 0.0003 34.9 2.2 56 203-264 126-194 (219)
10 4fm4_B NitrIle hydratase beta 46.4 5.3 0.00018 36.0 0.7 54 205-264 116-182 (206)
11 2cot_A Zinc finger protein 435 44.0 9.4 0.00032 26.6 1.6 41 85-125 8-63 (77)
12 3pys_P 30S ribosomal protein S 42.0 8.4 0.00029 30.3 1.1 15 250-264 11-26 (83)
13 3mjh_B Early endosome antigen 40.0 7.4 0.00025 25.9 0.4 24 109-132 6-29 (34)
14 3a8g_B NitrIle hydratase subun 39.8 24 0.00082 31.9 3.9 53 203-264 118-188 (212)
15 2zzd_A Thiocyanate hydrolase s 39.1 17 0.00059 30.6 2.7 58 201-264 30-100 (126)
16 4a4z_A Antiviral helicase SKI2 33.6 50 0.0017 35.4 5.8 55 172-229 576-633 (997)
17 3bn0_A 30S ribosomal protein S 33.5 13 0.00043 30.9 0.9 15 250-264 12-27 (112)
18 1ugp_B NitrIle hydratase beta 31.3 23 0.00077 32.4 2.3 57 202-264 133-202 (226)
19 1pjr_A PCRA; DNA repair, DNA r 31.2 10 0.00035 38.7 0.0 24 206-230 671-694 (724)
20 2lce_A B-cell lymphoma 6 prote 31.0 23 0.00079 24.3 1.9 33 93-125 15-62 (74)
21 1llm_C Chimera of ZIF23-GCN4; 27.5 43 0.0015 23.7 2.9 41 95-135 31-85 (88)
22 1x5w_A Zinc finger protein 64, 27.2 33 0.0011 23.2 2.1 34 93-126 7-55 (70)
23 1ed7_A Chitinase A1, (CHBD-CHI 26.8 12 0.00041 25.6 -0.3 28 204-231 4-36 (45)
24 3lay_A Zinc resistance-associa 26.4 1.6E+02 0.0053 25.7 6.7 37 157-193 93-131 (175)
25 3ghg_A Fibrinogen alpha chain; 25.2 2.2E+02 0.0074 29.4 8.3 15 178-192 141-155 (562)
26 1ez3_A Syntaxin-1A; three heli 25.0 2.4E+02 0.0082 21.8 8.1 52 119-175 61-112 (127)
27 3m1d_A Baculoviral IAP repeat- 24.7 22 0.00075 27.5 0.9 25 68-107 34-58 (85)
28 4dvc_A Thiol:disulfide interch 24.6 26 0.00088 27.9 1.3 19 109-130 31-49 (184)
29 2ct1_A Transcriptional repress 24.1 57 0.0019 22.4 2.9 33 94-126 14-63 (77)
30 1z6m_A Conserved hypothetical 23.8 35 0.0012 27.3 2.0 21 108-131 36-56 (175)
31 2p06_A Hypothetical protein AF 23.7 1.5E+02 0.0052 23.8 5.6 21 164-187 71-91 (114)
32 2lv2_A Insulinoma-associated p 23.7 28 0.00095 26.2 1.2 40 93-132 26-80 (85)
33 3siq_A Apoptosis 1 inhibitor; 23.5 23 0.00078 30.1 0.8 25 68-107 58-82 (136)
34 3bbn_P Ribosomal protein S16; 23.4 21 0.00071 28.4 0.5 15 250-264 11-26 (88)
35 1se0_A Apoptosis 1 inhibitor; 23.3 23 0.0008 29.0 0.8 25 68-107 36-60 (116)
36 1rpq_W Peptide E131; receptor- 22.1 24 0.00081 22.1 0.4 8 109-116 1-9 (26)
37 1f5n_A Interferon-induced guan 21.9 1.3E+02 0.0044 30.7 6.1 38 154-191 545-583 (592)
38 2k48_A Nucleoprotein; viral pr 21.7 3.1E+02 0.011 22.5 7.2 20 177-196 84-103 (107)
39 1jd5_A DIAP1, apoptosis 1 inhi 20.5 29 0.00098 28.9 0.8 25 68-107 48-72 (124)
No 1
>1vbv_A Hypothetical protein B0966; protein degradation, structural genomics, unknown function; 2.70A {Escherichia coli} SCOP: b.34.17.1
Probab=99.92 E-value=1.8e-26 Score=189.62 Aligned_cols=83 Identities=23% Similarity=0.361 Sum_probs=52.5
Q ss_pred ccccccCcEEEeeecCceEEEEcccccccCChhHHHHhhhhccCCCCCCCceEEEEeCC-------ccCccccccCC---
Q 020759 205 RFAFRLGQKVNHKIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQLLRRIC-------WLLTNQTWQGL--- 274 (321)
Q Consensus 205 ~vkFrVGQVvrHR~ygYrGVIvGWDp~c~a~eeW~~~~~v~~l~~gr~QPFYhVLVD~r-------~v~~~ql~~~~--- 274 (321)
.++|+|||||+||+|||+|||+||||.|+++++|+..|+.+ .++++|||||||||++ ||++++|.+..
T Consensus 3 ~~kf~IGqvvrHr~~gyrGVI~d~Dp~~~~~eew~~~~~~~--~~~~~QPfYhVL~e~~~~~~~~~YVaEenL~~~~s~~ 80 (105)
T 1vbv_A 3 ASKFGIGQQVRHSLLGYLGVVVDIDPVYSLSEPSPDELAVN--DELRAAPWYHVVMEDDNGLPVHTYLAEAQLSSELQDE 80 (105)
T ss_dssp CCSSCTTCEEEETTTCCEEEEEEEECC--------------------CCCEEEEEEECSSCCEEEEEEEGGGEEECCCSC
T ss_pred cceecCCCEEEecccCCCEEEEeECcccCCCHHHHHhcccc--CccCCCCceEEEEeCCCCceeeeEEcHHhccccCCCC
Confidence 47999999999999999999999999999999999999766 4799999999999865 46666655311
Q ss_pred -----CccceeeeecceEEE
Q 020759 275 -----IIPIFLSCFTGRIQL 289 (321)
Q Consensus 275 -----~i~~~f~~FdGr~y~ 289 (321)
.|+.+|+.|+|.+|+
T Consensus 81 ~i~HP~i~~~F~~f~~~~y~ 100 (105)
T 1vbv_A 81 HPEQPSMDELAQTIRKQLQA 100 (105)
T ss_dssp CTTCHHHHHHHHHHTTC---
T ss_pred CcCCCCHHHHhHhhcCCccc
Confidence 344899999999996
No 2
>1e52_A Excinuclease ABC subunit; DNA excision repair, UVRB, DNA repair, UVRC binding domain; NMR {Escherichia coli} SCOP: a.2.9.1 PDB: 1qoj_A
Probab=97.56 E-value=7e-05 Score=56.59 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhchhhHHHhhHHHHHHhhHHHhh
Q 020759 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (321)
Q Consensus 157 qLlqLr~~L~~AI~~E~YE~AA~LRD~Ir~Leeq~ 191 (321)
.|.+|+.+|++|.+..+||+||.+||+|+.|+.+.
T Consensus 25 ~i~~Le~~M~~AA~~leFE~AA~lRD~I~~L~~~l 59 (63)
T 1e52_A 25 KIHELEGLMMQHAQNLEFEEAAQIRDQLHQLRELF 59 (63)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999998763
No 3
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.28 E-value=0.0091 Score=60.89 Aligned_cols=35 Identities=26% Similarity=0.457 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHhhchhhHHHhhHHHHHHhhHHHh
Q 020759 156 LSIIRLRADLQKAIDSENYALAADLRDQICKLEAE 190 (321)
Q Consensus 156 ~qLlqLr~~L~~AI~~E~YE~AA~LRD~Ir~Leeq 190 (321)
..|.+|+.+|++|.++++||+||+|||+|+.|+++
T Consensus 626 ~~i~~l~~~m~~aa~~~~fe~Aa~~Rd~i~~l~~~ 660 (661)
T 2d7d_A 626 KVVEQMEHEMKEAAKALDFERAAELRDLLLELKAE 660 (661)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHhc
Confidence 34778899999999999999999999999999865
No 4
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=93.98 E-value=0.0098 Score=60.71 Aligned_cols=35 Identities=34% Similarity=0.429 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhchhhHHHhhHHHHHHhhHHHhh
Q 020759 157 SIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (321)
Q Consensus 157 qLlqLr~~L~~AI~~E~YE~AA~LRD~Ir~Leeq~ 191 (321)
.|.+|+.+|++|.+.++||+||.|||+|++|+++.
T Consensus 612 ~i~~l~~~m~~aa~~l~fe~Aa~lRd~i~~l~~~~ 646 (664)
T 1c4o_A 612 RIAELELAMWQAAEALDFERAARLRDEIRALEARL 646 (664)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 47788899999999999999999999999999874
No 5
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=74.34 E-value=8.3 Score=37.27 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhhchhhHHHhhHHHHHHhhHHHhhhhh
Q 020759 156 LSIIRLRADLQKAIDSENYALAADLRDQICKLEAESLAA 194 (321)
Q Consensus 156 ~qLlqLr~~L~~AI~~E~YE~AA~LRD~Ir~Leeq~~aa 194 (321)
.+|.++..+...++..+||++|+.|++++.+|+++.+..
T Consensus 401 ~~i~~l~~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~ 439 (468)
T 3pxg_A 401 QKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDT 439 (468)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 358888888899999999999999999999999887743
No 6
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=72.18 E-value=5.7 Score=28.35 Aligned_cols=30 Identities=43% Similarity=0.628 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhhchhhHHHhhHHHHHHhhHHHhh
Q 020759 154 KALSIIRLRADLQKAIDSENYALAADLRDQICKLEAES 191 (321)
Q Consensus 154 ~a~qLlqLr~~L~~AI~~E~YE~AA~LRD~Ir~Leeq~ 191 (321)
+..||++....|.+.| |-|||+|..|+.+-
T Consensus 18 dnlqlerdeqnlekii--------anlrdeiarlenev 47 (52)
T 3he5_B 18 DNLQLERDEQNLEKII--------ANLRDEIARLENEV 47 (52)
T ss_dssp HHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred hhhhhhhhHhhHHHHH--------HHHHHHHHHHHHHH
Confidence 3446777777788887 89999999998764
No 7
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=60.81 E-value=4.6 Score=36.99 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=36.7
Q ss_pred ccccccccCcEEE--------e-----eecCceEEEEcccccccCChhHHHHhhhhccCCCCCCCceEEEEeCCc
Q 020759 203 NARFAFRLGQKVN--------H-----KIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQLLRRICW 264 (321)
Q Consensus 203 n~~vkFrVGQVvr--------H-----R~ygYrGVIvGWDp~c~a~eeW~~~~~v~~l~~gr~QPFYhVLVD~r~ 264 (321)
....+|+|||.|+ | -.-|-.|+|.-.-..+-.++. .. .- .....||+|+|-++.++
T Consensus 137 ~~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~g~~~~pd~----~a-~g-~~~~p~~lY~V~F~~~e 205 (229)
T 3hht_B 137 SASPRFKVGERIKTKNIHPTGHTRFPRYARDKYGVIDEVYGAHVFPDD----AA-HR-KGENPQYLYRVRFEAEE 205 (229)
T ss_dssp SSCCSCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEEEEEECCHHH----HT-TT-SCCCCEEEEEEEEEHHH
T ss_pred CCCCCCCCCCEEEECCCCCCCcccCcHHHCCCeeEEEEEecCccCccc----cc-CC-CCCCCceeEEEEecchh
Confidence 3456899999997 3 235678999877655554432 11 11 12357999999987653
No 8
>3r8n_P 30S ribosomal protein S16; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ...
Probab=49.29 E-value=8.7 Score=30.15 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=11.7
Q ss_pred CCCCCceEEEE-eCCc
Q 020759 250 GPSQPFYQLLR-RICW 264 (321)
Q Consensus 250 gr~QPFYhVLV-D~r~ 264 (321)
.+++|||++.| |.|.
T Consensus 11 ~kk~PfYrIVvadsr~ 26 (82)
T 3r8n_P 11 AKKRPFYQVVVADSRN 26 (82)
T ss_dssp CTTSCCEEEEEEETTS
T ss_pred CCCCCEEEEEEeecCC
Confidence 47899999996 6554
No 9
>3qyh_B CO-type nitrIle hydratase beta subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} SCOP: b.34.4.0 PDB: 3qxe_B 3qz5_B 3qyg_B 3qz9_B
Probab=46.91 E-value=8.7 Score=34.93 Aligned_cols=56 Identities=21% Similarity=0.179 Sum_probs=37.1
Q ss_pred ccccccccCcEEE--------e-----eecCceEEEEcccccccCChhHHHHhhhhccCCCCCCCceEEEEeCCc
Q 020759 203 NARFAFRLGQKVN--------H-----KIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQLLRRICW 264 (321)
Q Consensus 203 n~~vkFrVGQVvr--------H-----R~ygYrGVIvGWDp~c~a~eeW~~~~~v~~l~~gr~QPFYhVLVD~r~ 264 (321)
....+|+|||.|+ | -.-|-.|+|.-.-..+-.+++ .. .- .....||+|+|-++.++
T Consensus 126 ~~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~RG~~G~I~~~~g~~~~pd~----~a-~g-~~~~p~~lY~V~F~~~e 194 (219)
T 3qyh_B 126 GARARFAVGDKVRVLNKNPVGHTRMPRYTRGKVGTVVIDHGVFVTPDT----AA-HG-KGEHPQHVYTVSFTSVE 194 (219)
T ss_dssp CSCCCCCTTCEEEECCCCCSSCCCSCGGGTTCEEEEEEEEEEECCHHH----HT-TT-SCCCCEEEEEEEEEHHH
T ss_pred CCCCCCCCCCEEEECCCCCCCcccccHHHCCCeeEEEEEecCccCccc----cc-cC-CCCCCceeEEEEecchh
Confidence 4456899999997 3 235677999877655555432 11 11 13467999999988654
No 10
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=46.44 E-value=5.3 Score=35.97 Aligned_cols=54 Identities=30% Similarity=0.414 Sum_probs=34.6
Q ss_pred ccccccCcEEE--------e-----eecCceEEEEcccccccCChhHHHHhhhhccCCCCCCCceEEEEeCCc
Q 020759 205 RFAFRLGQKVN--------H-----KIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQLLRRICW 264 (321)
Q Consensus 205 ~vkFrVGQVvr--------H-----R~ygYrGVIvGWDp~c~a~eeW~~~~~v~~l~~gr~QPFYhVLVD~r~ 264 (321)
..+|+|||.|+ | -.-|-.|+|+-.-..+-.++. .. .. .....||.|.|-++.++
T Consensus 116 ~~~F~vGd~Vrv~~~~~~gHtRlP~Y~rg~~G~I~~~~g~~v~Pd~----~A-~g-~ge~p~~lY~V~F~~~e 182 (206)
T 4fm4_B 116 EGGFKLGQRVHVKNEFVPGHTRFPAYIRGKAGVVVGISPAYPYPDA----AA-HG-EYGFSEPTYDVCFKSKD 182 (206)
T ss_dssp TTCCCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEECCCEECHHH----HT-TT-CCSCEECEEEEEEEHHH
T ss_pred CCCCcCCCEEEeCCCCCCCcccccHhhcCCeeEEEEEecCcCCccc----cc-CC-CCCCcceeEEEEEeccc
Confidence 35799999998 3 234667999976554444331 11 11 12345899999987654
No 11
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=44.00 E-value=9.4 Score=26.56 Aligned_cols=41 Identities=10% Similarity=-0.005 Sum_probs=27.9
Q ss_pred cccccccccCceeeecccccccc---------------cccccccHHhhHHHHHHH
Q 020759 85 SSERSESANEDILFFFFQLDLAT---------------RVQCALNMEEYDIAQQLR 125 (321)
Q Consensus 85 ~~e~s~s~n~~i~cf~cqldl~~---------------RLgCp~cYe~F~~a~~Lr 125 (321)
+.+..........|..|+..+.. .+.|+.|-..|.....|.
T Consensus 8 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~L~ 63 (77)
T 2cot_A 8 RSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLI 63 (77)
T ss_dssp CCCSCCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESSHHHHH
T ss_pred CCcCcCCCCCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCCHHHHH
Confidence 34444455566779999987764 478999999998633443
No 12
>3pys_P 30S ribosomal protein S16; ribosome, IGR, IRES, PSIV, CRPV; 3.40A {Thermus thermophilus} PDB: 1pnx_P 1voq_P 1vos_P 1vov_P 1vox_P 1voz_P 1pns_P 3ms0_P 3mr8_P 3pyq_P 3pyn_P 3pyu_P 3fic_P* 1emw_A 1fjg_P* 1hnw_P* 1hnx_P* 1hnz_P* 1hr0_P 1i94_P* ...
Probab=41.97 E-value=8.4 Score=30.29 Aligned_cols=15 Identities=13% Similarity=0.330 Sum_probs=11.6
Q ss_pred CCCCCceEEEE-eCCc
Q 020759 250 GPSQPFYQLLR-RICW 264 (321)
Q Consensus 250 gr~QPFYhVLV-D~r~ 264 (321)
.+++|||++.| |.|.
T Consensus 11 ~kkrPfYrIVvadsr~ 26 (83)
T 3pys_P 11 SKHNPHYRIVVTDARR 26 (83)
T ss_dssp STTCCCCCCEEEESSS
T ss_pred CCCCCeEEEEEEecCC
Confidence 47899999996 6553
No 13
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=39.98 E-value=7.4 Score=25.91 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=18.6
Q ss_pred ccccccHHhhHHHHHHHHHHHHHH
Q 020759 109 VQCALNMEEYDIAQQLRNKLTEVE 132 (321)
Q Consensus 109 LgCp~cYe~F~~a~~Lr~~L~~ih 132 (321)
+.||+|...|..+.+|..--++.|
T Consensus 6 FiCP~C~~~l~s~~~L~~Hye~~H 29 (34)
T 3mjh_B 6 FICPQCMKSLGSADELFKHYEAVH 29 (34)
T ss_dssp EECTTTCCEESSHHHHHHHHHHHT
T ss_pred cCCcHHHHHcCCHHHHHHHHHhcc
Confidence 789999999999888876554444
No 14
>3a8g_B NitrIle hydratase subunit beta; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 2ahj_B 2cyz_B* 2cz0_B 2cz6_B 2cz7_B 2d0q_B 2cz1_B 2zcf_B 2zpb_B 2zpe_B 2zpf_B 2zpg_B 2zph_B 2zpi_B 2qdy_B 3a8h_B 3a8l_B 3a8o_B 3a8m_B 1ahj_B
Probab=39.83 E-value=24 Score=31.92 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=33.2
Q ss_pred ccccccccCcEEE--------e-----eecCceEEE-EcccccccCChhHHHHhhhhccCCC----CCCCceEEEEeCCc
Q 020759 203 NARFAFRLGQKVN--------H-----KIFGYRAVI-CGMDPVCCESSSWMEIAQVEKLQQG----PSQPFYQLLRRICW 264 (321)
Q Consensus 203 n~~vkFrVGQVvr--------H-----R~ygYrGVI-vGWDp~c~a~eeW~~~~~v~~l~~g----r~QPFYhVLVD~r~ 264 (321)
....+|+|||.|+ | -.-|-.|+| .-.-..+-.+ +.+.+| ..||.|+|-++.++
T Consensus 118 ~~~~~F~vGd~Vrv~~~~~~gHtR~P~YvRGk~G~I~~~~~g~~~~P---------d~~a~g~~~~~~~p~Y~V~F~~~e 188 (212)
T 3a8g_B 118 VETTTFEVGQRVRVRDEYVPGHIRMPAYCRGRVGTISHRTTEKWPFP---------DAIGHGRNDAGEEPTYHVKFAAEE 188 (212)
T ss_dssp SCCCCCCTTCEEEECCCCCSSCCSCCGGGTTCEEEEEEECSSCBCCH---------HHHTTTCSCCCCBCEEEEEEEHHH
T ss_pred CcCcccCCCCeEEEecCCCCCcccccHHHCCCeEEEEEEeccCccCc---------chhccCcccCCCCCeEEEEechHH
Confidence 3356899999998 3 234667999 4333333332 222233 67899999987653
No 15
>2zzd_A Thiocyanate hydrolase subunit alpha; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dd4_A 2dxb_A 2dd5_A* 2dxc_A*
Probab=39.12 E-value=17 Score=30.62 Aligned_cols=58 Identities=12% Similarity=0.036 Sum_probs=37.9
Q ss_pred ccccccccccCcEEEe-------------eecCceEEEEcccccccCChhHHHHhhhhccCCCCCCCceEEEEeCCc
Q 020759 201 FENARFAFRLGQKVNH-------------KIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQLLRRICW 264 (321)
Q Consensus 201 ~~n~~vkFrVGQVvrH-------------R~ygYrGVIvGWDp~c~a~eeW~~~~~v~~l~~gr~QPFYhVLVD~r~ 264 (321)
......+|+|||.|+= -.-|..|+|.-.-..+-.++. .. .- .....||+|.|-++.++
T Consensus 30 ~~~~~prF~vGDrVrvr~~~p~gHtRlP~YvRGk~G~I~~~~G~~v~Pd~----~A-~G-~ge~p~~lY~VrF~~~e 100 (126)
T 2zzd_A 30 GMAGKSKFNVGDRVRIKDLPDLFYTRTMTYTRGATGTIVRLVYESPAAED----EA-FG-NEENVEWFYSIVFAQKD 100 (126)
T ss_dssp TTTCSCSSCTTCEEEECCCCCSSCCSSCGGGTTCEEEEEEEEEEECCHHH----HT-TT-CCSCCEEEEEEEEEHHH
T ss_pred CCCCCCccCCCCEEEEccCCCCCceeccHHhCCCEEEEEEEecccCCcch----hc-cC-CCCCcceeEEEEecchh
Confidence 3344568999999983 235678999866655554432 11 11 24578999999987654
No 16
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=33.62 E-value=50 Score=35.39 Aligned_cols=55 Identities=5% Similarity=-0.033 Sum_probs=34.7
Q ss_pred hhHHHhhHHHHHHhhHHHhhhhhhhhhhhccccccccccCcEEEeee--cCc-eEEEEccc
Q 020759 172 ENYALAADLRDQICKLEAESLAASATALAFENARFAFRLGQKVNHKI--FGY-RAVICGMD 229 (321)
Q Consensus 172 E~YE~AA~LRD~Ir~Leeq~~aasa~a~~~~n~~vkFrVGQVvrHR~--ygY-rGVIvGWD 229 (321)
+++++++.+|++|++++.+..... ..+......+..|.||.-+. .++ -|||+..+
T Consensus 576 ~~~~~~~~~r~~~~~~~~~~~~~~---~~~~~~~~~l~~gr~v~~~~~~~~~~~~~v~~~~ 633 (997)
T 4a4z_A 576 NDIEKFLELMLAYKEATVNLMQEM---VKSPSILHILKEGRLVAFRDPNDCLKLGFVFKVS 633 (997)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHH---TTSTTHHHHTCTTEEEEEECTTCCEEEEEEEEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH---hcCHhHHhhCCCCCEEEEecCCCCeeEEEEEeec
Confidence 478899999999999998764322 22333334789999996543 233 58888764
No 17
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A {Aquifex aeolicus} SCOP: d.27.1.1
Probab=33.52 E-value=13 Score=30.89 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=11.1
Q ss_pred CCCCCceEEEE-eCCc
Q 020759 250 GPSQPFYQLLR-RICW 264 (321)
Q Consensus 250 gr~QPFYhVLV-D~r~ 264 (321)
.+++|||++.| |.|.
T Consensus 12 ~KkrPfYrIVVaDsR~ 27 (112)
T 3bn0_A 12 RKHHPIYRIVVMDAKS 27 (112)
T ss_dssp ETTEEEEEEEEEECC-
T ss_pred CCCCCeEEEEEEecCC
Confidence 46899999996 6553
No 18
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=31.27 E-value=23 Score=32.35 Aligned_cols=57 Identities=12% Similarity=0.070 Sum_probs=37.6
Q ss_pred cccccccccCcEEE--------e-----eecCceEEEEcccccccCChhHHHHhhhhccCCCCCCCceEEEEeCCc
Q 020759 202 ENARFAFRLGQKVN--------H-----KIFGYRAVICGMDPVCCESSSWMEIAQVEKLQQGPSQPFYQLLRRICW 264 (321)
Q Consensus 202 ~n~~vkFrVGQVvr--------H-----R~ygYrGVIvGWDp~c~a~eeW~~~~~v~~l~~gr~QPFYhVLVD~r~ 264 (321)
.....+|+|||.|+ | -.-|-.|+|.-.-..+-.+++ .. +- .....||+|.|-++.++
T Consensus 133 ~~~~~~F~vGd~Vrv~~~~~~~HtR~P~Y~Rgk~G~I~~~~g~~~~pd~----~a-~g-~~~~p~~lY~V~F~~~e 202 (226)
T 1ugp_B 133 VDRPPKFKEGDVVRFSTASPKGHARRARYVRGKTGTVVKHHGAYIYPDT----AG-NG-LGECPEHLYTVRFTAQE 202 (226)
T ss_dssp CSSCCSCCTTCEEEECCCCCSSCCCCCGGGTTCEEEEEEEEEEECCHHH----HT-TT-SCCCCEEEEEEEEEHHH
T ss_pred CCCCCcCCCCCeEEEccCCCCCcccccHHhCCCeEEEEEEecCCCCcch----hc-cC-CCCCCceeEEEEechhh
Confidence 34456899999998 3 234677999966655555432 11 11 24567899999987654
No 19
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=31.22 E-value=10 Score=38.70 Aligned_cols=24 Identities=17% Similarity=0.527 Sum_probs=0.0
Q ss_pred cccccCcEEEeeecCceEEEEcccc
Q 020759 206 FAFRLGQKVNHKIFGYRAVICGMDP 230 (321)
Q Consensus 206 vkFrVGQVvrHR~ygYrGVIvGWDp 230 (321)
..|.+|+.|+|+.||. |+|++.+.
T Consensus 671 ~~~~~g~~v~h~~fg~-g~v~~~~~ 694 (724)
T 1pjr_A 671 GSWKVGDRANHRKWGI-GTVVSVRG 694 (724)
T ss_dssp -------------------------
T ss_pred cccccCCEeeccCCCC-ceEEEEec
Confidence 3599999999999996 99988764
No 20
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=31.01 E-value=23 Score=24.28 Aligned_cols=33 Identities=9% Similarity=0.147 Sum_probs=22.4
Q ss_pred cCceeeecccccccc---------------cccccccHHhhHHHHHHH
Q 020759 93 NEDILFFFFQLDLAT---------------RVQCALNMEEYDIAQQLR 125 (321)
Q Consensus 93 n~~i~cf~cqldl~~---------------RLgCp~cYe~F~~a~~Lr 125 (321)
...-.|..|+..+.. .+.|+.|-..|.....|.
T Consensus 15 ~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~~~~L~ 62 (74)
T 2lce_A 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK 62 (74)
T ss_dssp CCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESCHHHHH
T ss_pred CCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCCHHHHH
Confidence 344568888877654 468888888887644443
No 21
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=27.55 E-value=43 Score=23.66 Aligned_cols=41 Identities=10% Similarity=0.015 Sum_probs=31.7
Q ss_pred ceeeecccccccc--------------cccccccHHhhHHHHHHHHHHHHHHHHH
Q 020759 95 DILFFFFQLDLAT--------------RVQCALNMEEYDIAQQLRNKLTEVEEEI 135 (321)
Q Consensus 95 ~i~cf~cqldl~~--------------RLgCp~cYe~F~~a~~Lr~~L~~ih~~~ 135 (321)
...|..|+..+.. .+.|+.|-..|.....|..=|+++|+.+
T Consensus 31 ~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~c~~C~~~f~~~~~L~~H~~~~h~~~ 85 (88)
T 1llm_C 31 PFACDICGRKFARSDERKRHRDIQHILPILEDKVEELLSKNYHLENEVARLKKLV 85 (88)
T ss_dssp CEECTTTCCEESSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccCCCCCCccCCHHHHHHHHHHhCCCcchHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 3668888887765 4679999999988888888888877543
No 22
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.16 E-value=33 Score=23.16 Aligned_cols=34 Identities=6% Similarity=-0.009 Sum_probs=24.4
Q ss_pred cCceeeecccccccc---------------cccccccHHhhHHHHHHHH
Q 020759 93 NEDILFFFFQLDLAT---------------RVQCALNMEEYDIAQQLRN 126 (321)
Q Consensus 93 n~~i~cf~cqldl~~---------------RLgCp~cYe~F~~a~~Lr~ 126 (321)
.....|..|+..+.. .+.|+.|-..|.....|..
T Consensus 7 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~~~~~L~~ 55 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSK 55 (70)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEESSHHHHHH
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccCCHHHHHH
Confidence 445679999877654 4789999999986444443
No 23
>1ed7_A Chitinase A1, (CHBD-CHIA1); twisted beta-sandwich, hydrolase; NMR {Bacillus circulans} SCOP: b.72.2.1
Probab=26.76 E-value=12 Score=25.65 Aligned_cols=28 Identities=25% Similarity=0.332 Sum_probs=20.2
Q ss_pred cccccccCcEEEeeecCceEEEE-----ccccc
Q 020759 204 ARFAFRLGQKVNHKIFGYRAVIC-----GMDPV 231 (321)
Q Consensus 204 ~~vkFrVGQVvrHR~ygYrGVIv-----GWDp~ 231 (321)
+...|.+|++|.|.--.|+++.- ||+|.
T Consensus 4 ~~~~Y~~Gd~Vty~G~~Y~c~q~hts~~~w~P~ 36 (45)
T 1ed7_A 4 VNTAYTAGQLVTYNGKTYKCLQPHTSLAGWEPS 36 (45)
T ss_dssp SSEEECTTCCEEETTEEECBCSCEEECTTCSSC
T ss_pred CCceEcCCCEEEECCeEEEEEecCcCcCCcccC
Confidence 35689999999986666776643 56653
No 24
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=26.43 E-value=1.6e+02 Score=25.68 Aligned_cols=37 Identities=8% Similarity=0.076 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhhchhhHH--HhhHHHHHHhhHHHhhhh
Q 020759 157 SIIRLRADLQKAIDSENYA--LAADLRDQICKLEAESLA 193 (321)
Q Consensus 157 qLlqLr~~L~~AI~~E~YE--~AA~LRD~Ir~Leeq~~a 193 (321)
+|...+.+|+..+..+++. ++..|.++|.+|+.+...
T Consensus 93 ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~ 131 (175)
T 3lay_A 93 QLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDE 131 (175)
T ss_dssp HHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4777788999999888876 445666777777766553
No 25
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.16 E-value=2.2e+02 Score=29.39 Aligned_cols=15 Identities=13% Similarity=0.009 Sum_probs=8.1
Q ss_pred hHHHHHHhhHHHhhh
Q 020759 178 ADLRDQICKLEAESL 192 (321)
Q Consensus 178 A~LRD~Ir~Leeq~~ 192 (321)
+.+|-+|++||....
T Consensus 141 edq~~kIQRLEvDId 155 (562)
T 3ghg_A 141 RAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444555666665544
No 26
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=25.03 E-value=2.4e+02 Score=21.82 Aligned_cols=52 Identities=21% Similarity=0.290 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcccCCCcchhHHHHHHHHHHHHHHHHHhhchhhHH
Q 020759 119 DIAQQLRNKLTEVEEEISRQLEAKRGLSSKSEAQDKALSIIRLRADLQKAIDSENYA 175 (321)
Q Consensus 119 ~~a~~Lr~~L~~ih~~~~~~h~GK~p~~~~~~~~d~a~qLlqLr~~L~~AI~~E~YE 175 (321)
..|..|+.+|+.|...... -.|+.| ......+ ...+..-|+..|++++ .+|-
T Consensus 61 ~~a~~ik~~Lk~l~~~~~~-~~~~~~-~s~~~Ri-r~~q~~~L~~kf~e~m--~~y~ 112 (127)
T 1ez3_A 61 KTANKVRSKLKSIEQSIEQ-EEGLNR-SSADLRI-RKTQHSTLSRKFVEVM--SEYN 112 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHTTSC-CCHHHHH-HHHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-hcccCC-CcHHHHH-HHHHHHHHHHHHHHHH--HHHH
Confidence 4466899999999887753 345444 3333333 4447788888999988 6674
No 27
>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D
Probab=24.69 E-value=22 Score=27.46 Aligned_cols=25 Identities=32% Similarity=0.587 Sum_probs=18.7
Q ss_pred eecccccccCCCCCCCccccccccccCceeeecccccccc
Q 020759 68 ANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLAT 107 (321)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~e~s~s~n~~i~cf~cqldl~~ 107 (321)
+.||+.+.| .+..+.||+|+..|.+
T Consensus 34 A~AGFyy~g---------------~~D~v~Cf~C~~~l~~ 58 (85)
T 3m1d_A 34 ARAGFYYTG---------------VNDKVKCFCCGLMLDN 58 (85)
T ss_dssp HHTTEEECS---------------STTCEEETTTCCEECS
T ss_pred HHCCCeEeC---------------CCCEEEeCCcCCEecC
Confidence 567777764 2567889999998765
No 28
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=24.58 E-value=26 Score=27.89 Aligned_cols=19 Identities=5% Similarity=-0.078 Sum_probs=13.3
Q ss_pred ccccccHHhhHHHHHHHHHHHH
Q 020759 109 VQCALNMEEYDIAQQLRNKLTE 130 (321)
Q Consensus 109 LgCp~cYe~F~~a~~Lr~~L~~ 130 (321)
++||+|+.... .|.+++++
T Consensus 31 y~Cp~C~~~~~---~~~~l~~~ 49 (184)
T 4dvc_A 31 FYCPHCNTFEP---IIAQLKQQ 49 (184)
T ss_dssp TTCHHHHHHHH---HHHHHHHT
T ss_pred CCCHhHHHHhH---HHHHHHhh
Confidence 69999986533 56666555
No 29
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.12 E-value=57 Score=22.38 Aligned_cols=33 Identities=6% Similarity=0.093 Sum_probs=22.5
Q ss_pred Cceeeecccccccc-----------------cccccccHHhhHHHHHHHH
Q 020759 94 EDILFFFFQLDLAT-----------------RVQCALNMEEYDIAQQLRN 126 (321)
Q Consensus 94 ~~i~cf~cqldl~~-----------------RLgCp~cYe~F~~a~~Lr~ 126 (321)
....|.+|+..+.. .+.|+.|-..|.....|..
T Consensus 14 k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~ 63 (77)
T 2ct1_A 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGV 63 (77)
T ss_dssp CSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHH
T ss_pred CCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHH
Confidence 44678888866544 3678999888886444444
No 30
>1z6m_A Conserved hypothetical protein; structural genomics, MCSG,, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.30A {Enterococcus faecalis} SCOP: c.47.1.13
Probab=23.83 E-value=35 Score=27.35 Aligned_cols=21 Identities=14% Similarity=0.355 Sum_probs=15.9
Q ss_pred cccccccHHhhHHHHHHHHHHHHH
Q 020759 108 RVQCALNMEEYDIAQQLRNKLTEV 131 (321)
Q Consensus 108 RLgCp~cYe~F~~a~~Lr~~L~~i 131 (321)
-..||.||.... .|.+++++.
T Consensus 36 D~~Cp~C~~~~~---~~~~~~~~~ 56 (175)
T 1z6m_A 36 NVRCPYCRKWFE---ESEELLAQS 56 (175)
T ss_dssp CTTCHHHHHHHH---HHHHHHHHH
T ss_pred CCCCcchHHHHH---HHHHHHHHH
Confidence 458999999877 577777654
No 31
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=23.71 E-value=1.5e+02 Score=23.79 Aligned_cols=21 Identities=29% Similarity=0.770 Sum_probs=15.5
Q ss_pred HHHHhhchhhHHHhhHHHHHHhhH
Q 020759 164 DLQKAIDSENYALAADLRDQICKL 187 (321)
Q Consensus 164 ~L~~AI~~E~YE~AA~LRD~Ir~L 187 (321)
+|.+||+.|++| -|||++-..
T Consensus 71 elreavekedwe---nlrdelldv 91 (114)
T 2p06_A 71 ELREAVEKEDWE---NLRDELLDV 91 (114)
T ss_dssp HHHHHHHTTCHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHH
Confidence 778899999985 577776443
No 32
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=23.66 E-value=28 Score=26.17 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=29.5
Q ss_pred cCceeeecccccccc---------------cccccccHHhhHHHHHHHHHHHHHH
Q 020759 93 NEDILFFFFQLDLAT---------------RVQCALNMEEYDIAQQLRNKLTEVE 132 (321)
Q Consensus 93 n~~i~cf~cqldl~~---------------RLgCp~cYe~F~~a~~Lr~~L~~ih 132 (321)
.+.-+|.+||-.+.. .+.|+.|-..|.....|..=++++|
T Consensus 26 ~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H 80 (85)
T 2lv2_A 26 AECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCH 80 (85)
T ss_dssp CTTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEESSHHHHHHHHHTTC
T ss_pred CCCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeCCHHHHHHhCcccC
Confidence 344579999988877 5789999999987666666555544
No 33
>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster}
Probab=23.55 E-value=23 Score=30.13 Aligned_cols=25 Identities=24% Similarity=0.570 Sum_probs=18.6
Q ss_pred eecccccccCCCCCCCccccccccccCceeeecccccccc
Q 020759 68 ANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLAT 107 (321)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~e~s~s~n~~i~cf~cqldl~~ 107 (321)
+.|||.+.| .+..+.||+|+..|.+
T Consensus 58 A~AGFYYtG---------------~~D~V~Cf~C~~~L~~ 82 (136)
T 3siq_A 58 AQTGMYFTH---------------AGDKVKCFFCGVEIGS 82 (136)
T ss_dssp HHTTEEECS---------------STTCEEETTTCCEEEC
T ss_pred HHCCCeEcC---------------CCCeEEEeccCCEecC
Confidence 467777754 2467889999998875
No 34
>3bbn_P Ribosomal protein S16; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=23.38 E-value=21 Score=28.36 Aligned_cols=15 Identities=7% Similarity=0.248 Sum_probs=11.6
Q ss_pred CCCCCceEEEE-eCCc
Q 020759 250 GPSQPFYQLLR-RICW 264 (321)
Q Consensus 250 gr~QPFYhVLV-D~r~ 264 (321)
.+++|||++.| |.|.
T Consensus 11 ~KkrPfYrIVvadsr~ 26 (88)
T 3bbn_P 11 RKQRAVYRIVAIDVRS 26 (88)
T ss_dssp CTTCCCCCCCCEETTS
T ss_pred CCCCCeEEEEEEecCC
Confidence 57899999996 6553
No 35
>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E
Probab=23.34 E-value=23 Score=29.00 Aligned_cols=25 Identities=24% Similarity=0.570 Sum_probs=18.5
Q ss_pred eecccccccCCCCCCCccccccccccCceeeecccccccc
Q 020759 68 ANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLAT 107 (321)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~e~s~s~n~~i~cf~cqldl~~ 107 (321)
+.||+.+.| .+..+.||+|+..|..
T Consensus 36 A~AGFyy~g---------------~~D~V~Cf~C~~~L~~ 60 (116)
T 1se0_A 36 AQTGMYFTH---------------AGDKVKCFFCGVEIGS 60 (116)
T ss_dssp HHTTEEECS---------------STTCEEETTTCCEEES
T ss_pred HHcCCcCcC---------------CCCEEEecCcCCEecC
Confidence 567777764 2467889999998864
No 36
>1rpq_W Peptide E131; receptor-peptide complex, membrane protein; HET: NAG BMA NDG CIT; 3.00A {Homo sapiens} PDB: 1kco_A
Probab=22.13 E-value=24 Score=22.08 Aligned_cols=8 Identities=50% Similarity=0.733 Sum_probs=4.1
Q ss_pred ccccc-cHH
Q 020759 109 VQCAL-NME 116 (321)
Q Consensus 109 LgCp~-cYe 116 (321)
+|||+ |||
T Consensus 1 vqcphfcye 9 (26)
T 1rpq_W 1 VQCPHFCYE 9 (26)
T ss_dssp CCCCTHHHH
T ss_pred CCCCeeeee
Confidence 35664 554
No 37
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=21.86 E-value=1.3e+02 Score=30.69 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHhhchhhHH-HhhHHHHHHhhHHHhh
Q 020759 154 KALSIIRLRADLQKAIDSENYA-LAADLRDQICKLEAES 191 (321)
Q Consensus 154 ~a~qLlqLr~~L~~AI~~E~YE-~AA~LRD~Ir~Leeq~ 191 (321)
+..+.+..+.+.++.+-.|+|+ +|..|..+|..|+++.
T Consensus 545 e~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ei~~l~~~~ 583 (592)
T 1f5n_A 545 EQERTLALKLQEQEQLLKEGFQKESRIMKNEIQDLQTKM 583 (592)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3335566666777788888887 8888999999998773
No 38
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=21.71 E-value=3.1e+02 Score=22.47 Aligned_cols=20 Identities=15% Similarity=0.202 Sum_probs=14.7
Q ss_pred hhHHHHHHhhHHHhhhhhhh
Q 020759 177 AADLRDQICKLEAESLAASA 196 (321)
Q Consensus 177 AA~LRD~Ir~Leeq~~aasa 196 (321)
...|++.|..|+.+.+.+.+
T Consensus 84 Vsalq~KiaeLKrqLAd~va 103 (107)
T 2k48_A 84 VSTLETKLGELKRQLADLVA 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 46788899999888774433
No 39
>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A
Probab=20.53 E-value=29 Score=28.89 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=19.1
Q ss_pred eecccccccCCCCCCCccccccccccCceeeecccccccc
Q 020759 68 ANAGWLFKGGSDRGLDASSERSESANEDILFFFFQLDLAT 107 (321)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~e~s~s~n~~i~cf~cqldl~~ 107 (321)
+.||+.+.|. +..+.||+|+..|.+
T Consensus 48 A~AGFyYtg~---------------~D~V~Cf~C~~~L~~ 72 (124)
T 1jd5_A 48 AEAGFFYTGV---------------GDRVRCFSCGGGLMD 72 (124)
T ss_dssp HHTTEEECSS---------------TTCEEETTTCCEEEC
T ss_pred HHcCCCCcCC---------------CCEEEecCCCCEecC
Confidence 5688888652 467889999998855
Done!