Query 020760
Match_columns 321
No_of_seqs 211 out of 1342
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 07:47:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020760.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020760hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x93_A Hypothetical protein HP 26.6 23 0.00077 24.1 1.1 30 3-32 7-38 (55)
2 2k1o_A Putative; repressor, tr 17.1 41 0.0014 23.6 0.9 29 3-31 21-51 (66)
3 2wp7_A PPPDE peptidase domain- 13.0 64 0.0022 27.3 1.1 30 9-39 88-117 (168)
4 2bn5_A PSI; nuclear protein, s 12.5 53 0.0018 20.4 0.3 14 151-164 2-15 (33)
5 3h90_A Ferrous-iron efflux pum 12.0 2.1E+02 0.0073 25.2 4.5 51 79-129 109-159 (283)
6 1bh9_B TAFII28; histone fold, 10.2 1.8E+02 0.0063 21.8 2.8 46 4-57 1-46 (89)
7 2ki0_A DS119; beta-alpha-beta, 8.2 1.3E+02 0.0044 18.4 0.9 11 5-15 13-23 (36)
8 2lyc_A Spindle and kinetochore 6.8 1.3E+02 0.0043 24.4 0.6 17 1-17 7-23 (130)
9 2i68_A Protein EMRE; transmemb 4.7 1.2E+03 0.04 18.4 5.3 33 33-65 46-78 (137)
10 3fbi_A Mediator of RNA polymer 4.7 2.2E+02 0.0077 21.2 0.8 15 3-17 23-37 (84)
No 1
>1x93_A Hypothetical protein HP0222; JHP0208, transcription, regula METJ, MNT, PArg, COPG, REPA; NMR {Helicobacter pylori} SCOP: a.43.1.3
Probab=26.60 E-value=23 Score=24.13 Aligned_cols=30 Identities=20% Similarity=0.511 Sum_probs=22.9
Q ss_pred ccCHhhhhhhhccccccCCc--chhhhhhhhH
Q 020760 3 YIGAHGVAALQRYKYSGVDN--SYLAKYVLQP 32 (321)
Q Consensus 3 yi~~~~l~~l~~ykY~~~d~--S~l~~yv~~p 32 (321)
|+|+|+-+.|++-.+.-.+. |++-+|+++-
T Consensus 7 Y~SkEey~~L~klA~eE~eSV~sfIKR~IlK~ 38 (55)
T 1x93_A 7 YFSDEQYQKLEKMANEEEESVGSYIKRYILKA 38 (55)
T ss_dssp EECHHHHHHHHHHHHHTTSCTTHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999988866553 6777776543
No 2
>2k1o_A Putative; repressor, transcriptional regulator, D binding, ribbon-helix-helix, HP0564, JHP0511, unknown funct regulation; NMR {Helicobacter pylori}
Probab=17.13 E-value=41 Score=23.64 Aligned_cols=29 Identities=21% Similarity=0.452 Sum_probs=22.3
Q ss_pred ccCHhhhhhhhccccccCCc--chhhhhhhh
Q 020760 3 YIGAHGVAALQRYKYSGVDN--SYLAKYVLQ 31 (321)
Q Consensus 3 yi~~~~l~~l~~ykY~~~d~--S~l~~yv~~ 31 (321)
|+|+|+-+.|++-.+.-.+. |++-+|+++
T Consensus 21 Y~SkEey~~L~klA~eE~eSV~sfIKR~IlK 51 (66)
T 2k1o_A 21 YLSKEEHDVLRRLADEEVESVNSFVKRHILK 51 (66)
T ss_dssp EEEHHHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999988876664 566666654
No 3
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=13.00 E-value=64 Score=27.33 Aligned_cols=30 Identities=10% Similarity=0.225 Sum_probs=23.7
Q ss_pred hhhhhccccccCCcchhhhhhhhHHHHHHHh
Q 020760 9 VAALQRYKYSGVDNSYLAKYVLQPFWSRFVN 39 (321)
Q Consensus 9 l~~l~~ykY~~~d~S~l~~yv~~p~~~~~v~ 39 (321)
++.|++-+|.+....++++.+ +.|.+.+.+
T Consensus 88 l~~l~~~~~~g~~Y~Ll~~NC-NhFs~~l~~ 117 (168)
T 2wp7_A 88 LSSLGESLFRGEAYNLFEHNC-NTFSNEVAQ 117 (168)
T ss_dssp HHHHHTTTCSGGGCBTTTBSH-HHHHHHHHH
T ss_pred HHHhhhccCCcccCchhhhcc-chhHHHHHH
Confidence 466676679999999999997 778777765
No 4
>2bn5_A PSI; nuclear protein, splicing, protein-protein interaction, structure, proline-rich peptide; NMR {Drosophila melanogaster} PDB: 2bn6_A
Probab=12.48 E-value=53 Score=20.37 Aligned_cols=14 Identities=21% Similarity=0.759 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhce
Q 020760 151 PFFGATWEHYFTNT 164 (321)
Q Consensus 151 ~fy~s~we~y~tg~ 164 (321)
+.|.++|-||+...
T Consensus 2 ~DYSaQW~eYYrsi 15 (33)
T 2bn5_A 2 ADYSAQWAEYYRSV 15 (33)
T ss_dssp CTTHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHc
Confidence 35889999998863
No 5
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=12.03 E-value=2.1e+02 Score=25.23 Aligned_cols=51 Identities=12% Similarity=0.022 Sum_probs=32.0
Q ss_pred hHHHHHHHHHHHHHHhhhhcHHHHHhcCCCCcchhhhhhhhhHHHHHHHHH
Q 020760 79 WVHFAHGLLLFLYQTFDAVDGKQARRTNSSSPLGELFDHGCDALACAFEAM 129 (321)
Q Consensus 79 w~~~~~ai~lf~~~~lD~~DGk~ARrt~~sSplG~lfDh~~D~~~~~~~~l 129 (321)
|....+.+.+.+...+=-.-.+.+||+++..-.++..|+..|.++.....+
T Consensus 109 ~~l~v~~~s~~v~~~~~~~~~~~~~~~~s~~l~a~~~h~~~D~~~s~~vli 159 (283)
T 3h90_A 109 VGVIVTIVALICTIILVSFQRWVVRRTQSQAVRADMLHYQSDVMMNGAILL 159 (283)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCCSCSCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444333333345678888877778899999999887665433
No 6
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=10.16 E-value=1.8e+02 Score=21.78 Aligned_cols=46 Identities=9% Similarity=0.110 Sum_probs=31.5
Q ss_pred cCHhhhhhhhccccccCCcchhhhhhhhHHHHHHHhhCCCCCCccHHHHHHHHH
Q 020760 4 IGAHGVAALQRYKYSGVDNSYLAKYVLQPFWSRFVNFFPLWMPPNMITLTGFIF 57 (321)
Q Consensus 4 i~~~~l~~l~~ykY~~~d~S~l~~yv~~p~~~~~v~~~P~~vaPN~ITl~g~~~ 57 (321)
.|+||+++-+.|+=++-.++-+ +.+.+.+. -..+++|++..+|.+.
T Consensus 1 ft~eQ~~Rye~~Rrs~f~k~~v-----Krl~~~~~---~~~v~~~v~i~v~gla 46 (89)
T 1bh9_B 1 FSEEQLNRYEMYRRSAFPKAAI-----KRLIQSIT---GTSVSQNVVIAMSGIS 46 (89)
T ss_dssp CCHHHHHHHHHHHHCCCCHHHH-----HHHHHHHH---SSCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCHHHH-----HHHHHHHc---CCCCCccHHHHHHHHH
Confidence 4899999999998876665544 33334443 3578899887766543
No 7
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=8.17 E-value=1.3e+02 Score=18.41 Aligned_cols=11 Identities=9% Similarity=0.093 Sum_probs=8.8
Q ss_pred CHhhhhhhhcc
Q 020760 5 GAHGVAALQRY 15 (321)
Q Consensus 5 ~~~~l~~l~~y 15 (321)
+||++++||+-
T Consensus 13 tpeelkklkee 23 (36)
T 2ki0_A 13 TPEELKKLKEE 23 (36)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 68888888874
No 8
>2lyc_A Spindle and kinetochore-associated protein 1 HOMO; SKA1, microtubule, SKA1-MTBD, protein binding; NMR {Caenorhabditis elegans}
Probab=6.79 E-value=1.3e+02 Score=24.43 Aligned_cols=17 Identities=12% Similarity=0.303 Sum_probs=12.8
Q ss_pred CCccCHhhhhhhhcccc
Q 020760 1 MGYIGAHGVAALQRYKY 17 (321)
Q Consensus 1 m~yi~~~~l~~l~~ykY 17 (321)
|+|||+|+.+.+.+|--
T Consensus 7 ~~~IT~eEF~sIPkYmr 23 (130)
T 2lyc_A 7 VPQITDEEFKTIPKYQL 23 (130)
T ss_dssp SCCCCHHHHTTSCHHHH
T ss_pred eeeecHHHHhccCHHHH
Confidence 56888888888877743
No 9
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=4.75 E-value=1.2e+03 Score=18.35 Aligned_cols=33 Identities=6% Similarity=0.090 Sum_probs=16.5
Q ss_pred HHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHH
Q 020760 33 FWSRFVNFFPLWMPPNMITLTGFIFLVTSAVIG 65 (321)
Q Consensus 33 ~~~~~v~~~P~~vaPN~ITl~g~~~~~~~~~~~ 65 (321)
.|.+..+.+|...+--.-|-+|-++..+...++
T Consensus 46 l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~ 78 (137)
T 2i68_A 46 LLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGF 78 (137)
T ss_dssp HHHHHHC-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 356666778888775555666666665554443
No 10
>3fbi_A Mediator of RNA polymerase II transcription subunit 7; proline-rich stretches, right-handed four-helix bundle, protein-protein complex; 2.80A {Saccharomyces cerevisiae} PDB: 3fbn_A
Probab=4.66 E-value=2.2e+02 Score=21.21 Aligned_cols=15 Identities=20% Similarity=0.472 Sum_probs=13.1
Q ss_pred ccCHhhhhhhhcccc
Q 020760 3 YIGAHGVAALQRYKY 17 (321)
Q Consensus 3 yi~~~~l~~l~~ykY 17 (321)
+.|+|.+++|+++|=
T Consensus 23 ~FT~eNl~kl~e~k~ 37 (84)
T 3fbi_A 23 FFTQSNLEKLPKYKE 37 (84)
T ss_dssp GCCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHH
Confidence 579999999999974
Done!