Query 020760
Match_columns 321
No_of_seqs 211 out of 1342
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 07:47:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020760.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020760hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bh9b_ a.22.1.3 (B:) TAF(II)2 14.5 70 0.0051 22.4 3.5 47 4-58 1-47 (89)
2 d1x93a1 a.43.1.3 (A:31-73) Unc 13.6 32 0.0023 20.4 1.1 30 3-32 7-38 (43)
3 d1qr0a1 d.150.1.1 (A:1-101) 4' 9.5 34 0.0025 24.1 0.3 31 2-32 22-53 (101)
4 d2g3qa1 a.5.2.1 (A:1339-1381) 9.4 43 0.0031 20.5 0.7 18 1-18 14-31 (43)
5 d1x3ha2 g.39.1.3 (A:43-74) Leu 8.8 41 0.003 19.3 0.4 13 307-319 5-17 (32)
6 d1v6ga2 g.39.1.3 (A:42-81) Act 8.3 53 0.0039 19.5 0.8 12 306-317 5-16 (40)
7 d2a5yb1 a.4.5.80 (B:386-543) C 6.2 46 0.0033 24.7 -0.4 25 90-114 34-58 (158)
8 d1iyjb2 a.171.1.1 (B:2761-2897 5.2 68 0.0049 24.4 0.0 21 1-21 88-108 (137)
9 d1mo6a2 d.48.1.1 (A:270-329) R 4.7 89 0.0064 20.2 0.3 11 110-120 2-12 (60)
10 d2fbqa2 a.121.1.1 (A:81-214) T 4.6 3.1E+02 0.022 19.5 3.7 58 69-126 69-127 (134)
No 1
>d1bh9b_ a.22.1.3 (B:) TAF(II)28 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.52 E-value=70 Score=22.45 Aligned_cols=47 Identities=9% Similarity=0.093 Sum_probs=32.5
Q ss_pred cCHhhhhhhhccccccCCcchhhhhhhhHHHHHHHhhCCCCCCccHHHHHHHHHH
Q 020760 4 IGAHGVAALQRYKYSGVDNSYLAKYVLQPFWSRFVNFFPLWMPPNMITLTGFIFL 58 (321)
Q Consensus 4 i~~~~l~~l~~ykY~~~d~S~l~~yv~~p~~~~~v~~~P~~vaPN~ITl~g~~~~ 58 (321)
.||||+++-+.|+=++-.++-+ +.+.+.+. -..++||+++.++-+.=
T Consensus 1 Fs~eQ~~RyE~fRRs~~~K~~v-----krl~~~~~---g~sv~~~v~i~v~giaK 47 (89)
T d1bh9b_ 1 FSEEQLNRYEMYRRSAFPKAAI-----KRLIQSIT---GTSVSQNVVIAMSGISK 47 (89)
T ss_dssp CCHHHHHHHHHHHHCCCCHHHH-----HHHHHHHH---SSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCHHHH-----HHHHHHHc---CCCCChhHHHHHHHHHH
Confidence 3899999999999887665544 44444444 35789998877665443
No 2
>d1x93a1 a.43.1.3 (A:31-73) Uncharacterized protein HP0222 {Helicobacter pylori [TaxId: 210]}
Probab=13.56 E-value=32 Score=20.37 Aligned_cols=30 Identities=20% Similarity=0.505 Sum_probs=18.8
Q ss_pred ccCHhhhhhhhccccccCC--cchhhhhhhhH
Q 020760 3 YIGAHGVAALQRYKYSGVD--NSYLAKYVLQP 32 (321)
Q Consensus 3 yi~~~~l~~l~~ykY~~~d--~S~l~~yv~~p 32 (321)
|.|+||-++|++..-.-+. .|.+.+|+++.
T Consensus 7 yfsdeqyqklekmaneeeesvgsyikryilka 38 (43)
T d1x93a1 7 YFSDEQYQKLEKMANEEEESVGSYIKRYILKA 38 (43)
T ss_dssp EECHHHHHHHHHHHHHTTSCTTHHHHHHHHHH
T ss_pred EecHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 7889998888875432222 25666666543
No 3
>d1qr0a1 d.150.1.1 (A:1-101) 4'-Phosphopantetheinyl transferase SFP {Bacillus subtilis [TaxId: 1423]}
Probab=9.55 E-value=34 Score=24.08 Aligned_cols=31 Identities=10% Similarity=0.239 Sum_probs=21.6
Q ss_pred CccCHhhhhhhhcccccc-CCcchhhhhhhhH
Q 020760 2 GYIGAHGVAALQRYKYSG-VDNSYLAKYVLQP 32 (321)
Q Consensus 2 ~yi~~~~l~~l~~ykY~~-~d~S~l~~yv~~p 32 (321)
.++++++.++.++|++.. ...+++.+.++|-
T Consensus 22 ~~Ls~~e~~r~~r~~~~~dr~~~l~~r~llr~ 53 (101)
T d1qr0a1 22 TFISPEKREKCRRFYHKEDAHRTLLGDVLVRS 53 (101)
T ss_dssp TTSCHHHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 579999999999999854 3334555554443
No 4
>d2g3qa1 a.5.2.1 (A:1339-1381) Endocytic protein Ede1, YBL047C {Saccharomyces cerevisiae [TaxId: 4932]}
Probab=9.41 E-value=43 Score=20.49 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=15.5
Q ss_pred CCccCHhhhhhhhccccc
Q 020760 1 MGYIGAHGVAALQRYKYS 18 (321)
Q Consensus 1 m~yi~~~~l~~l~~ykY~ 18 (321)
|+|-.+++.+.|++++++
T Consensus 14 MGF~e~~A~~AL~k~~wn 31 (43)
T d2g3qa1 14 MGFTEEEAHNALEKCNWD 31 (43)
T ss_dssp TTSCHHHHHHHHHHHTSC
T ss_pred cCCCHHHHHHHHHHcCCC
Confidence 788888899999999885
No 5
>d1x3ha2 g.39.1.3 (A:43-74) Leupaxin {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.84 E-value=41 Score=19.33 Aligned_cols=13 Identities=38% Similarity=0.960 Sum_probs=11.4
Q ss_pred hcCCCCCccchhc
Q 020760 307 CLFPFNSHIFFEF 319 (321)
Q Consensus 307 ck~pf~~~~~~~~ 319 (321)
|..||+--+|||.
T Consensus 5 C~~PF~~~~Fy~~ 17 (32)
T d1x3ha2 5 CFTSFSTGSFFEL 17 (32)
T ss_dssp SCCBSCSSCCEES
T ss_pred cCCcCCCCCeEeE
Confidence 7899999999884
No 6
>d1v6ga2 g.39.1.3 (A:42-81) Actin-binding LIM protein 2, abLIM2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.28 E-value=53 Score=19.53 Aligned_cols=12 Identities=25% Similarity=0.562 Sum_probs=9.6
Q ss_pred HhcCCCCCccch
Q 020760 306 ICLFPFNSHIFF 317 (321)
Q Consensus 306 mck~pf~~~~~~ 317 (321)
.|++|||.-|--
T Consensus 5 vCr~pFP~GDRV 16 (40)
T d1v6ga2 5 VCRLPFPPGDRV 16 (40)
T ss_dssp SSCCCCCSSSCE
T ss_pred ccCCCCCCCCeE
Confidence 589999988743
No 7
>d2a5yb1 a.4.5.80 (B:386-543) Cell death protein 4, CED-4 {Caenorhabditis elegans [TaxId: 6239]}
Probab=6.16 E-value=46 Score=24.71 Aligned_cols=25 Identities=24% Similarity=0.216 Sum_probs=17.7
Q ss_pred HHHHhhhhcHHHHHhcCCCCcchhh
Q 020760 90 LYQTFDAVDGKQARRTNSSSPLGEL 114 (321)
Q Consensus 90 ~~~~lD~~DGk~ARrt~~sSplG~l 114 (321)
.+.-=|.+|-+.|.|.+.-|..|++
T Consensus 34 csnee~qlddevadrlkrlskrgal 58 (158)
T d2a5yb1 34 CSNEEEQLDDEVADRLKRLSKRGAL 58 (158)
T ss_dssp -----CCCTHHHHHHHHHTTTBSSC
T ss_pred cCChHhhhhHHHHHHHHHHHhccch
Confidence 3556789999999999888888874
No 8
>d1iyjb2 a.171.1.1 (B:2761-2897) BRCA2 tower domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.16 E-value=68 Score=24.37 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=0.0
Q ss_pred CCccCHhhhhhhhccccccCC
Q 020760 1 MGYIGAHGVAALQRYKYSGVD 21 (321)
Q Consensus 1 m~yi~~~~l~~l~~ykY~~~d 21 (321)
|.++|++|++.|.+|+=+=.+
T Consensus 88 e~~lS~eQl~al~~yq~~l~e 108 (137)
T d1iyjb2 88 ETCFSEEQLRALNNYRQMLSD 108 (137)
T ss_dssp ---------------------
T ss_pred HHHcCHHHHHHHHHHHHHHHH
Confidence 458999999999999865444
No 9
>d1mo6a2 d.48.1.1 (A:270-329) RecA protein, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=4.67 E-value=89 Score=20.18 Aligned_cols=11 Identities=45% Similarity=0.691 Sum_probs=5.5
Q ss_pred cchhhhhhhhh
Q 020760 110 PLGELFDHGCD 120 (321)
Q Consensus 110 plG~lfDh~~D 120 (321)
+-|+++|-++|
T Consensus 2 r~gellDla~~ 12 (60)
T d1mo6a2 2 REGSLIDMGVD 12 (60)
T ss_dssp HHHHHHHHHHT
T ss_pred chhHHHHHHHH
Confidence 44555555544
No 10
>d2fbqa2 a.121.1.1 (A:81-214) Transcriptional regulator PsrA {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.58 E-value=3.1e+02 Score=19.49 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=31.6
Q ss_pred cCCCCCCCchhHHHHH-HHHHHHHHHhhhhcHHHHHhcCCCCcchhhhhhhhhHHHHHH
Q 020760 69 SPCLDTAPPRWVHFAH-GLLLFLYQTFDAVDGKQARRTNSSSPLGELFDHGCDALACAF 126 (321)
Q Consensus 69 ~~~~~~~~p~w~~~~~-ai~lf~~~~lD~~DGk~ARrt~~sSplG~lfDh~~D~~~~~~ 126 (321)
.|+.+.+.-.|.+... +.+++...--|.++..-....++.+...++.||.++.+...+
T Consensus 69 lP~l~~~el~wr~~f~vga~~~~l~~~~~~~~l~~~~~~~~~d~e~~~~~Li~F~~aGl 127 (134)
T d2fbqa2 69 APKLPPIELFWRVHFMLGAAAFSMSGIKALRAMAETDFGVNTSTEQVMHLMVPFFAAGM 127 (134)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHcchHHHHhcccccCCCCCHHHHHHHHHHHHHHHh
Confidence 3554443344543332 233333333455555444445666778889999988765544
Done!