Query 020761
Match_columns 321
No_of_seqs 147 out of 1729
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 04:56:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020761.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020761hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06027 DUF914: Eukaryotic pr 100.0 4.4E-37 9.4E-42 273.7 28.1 277 16-292 6-313 (334)
2 PLN00411 nodulin MtN21 family 100.0 2.5E-29 5.3E-34 228.6 28.3 271 19-290 9-334 (358)
3 PRK11689 aromatic amino acid e 100.0 4.8E-27 1E-31 210.0 25.3 254 28-287 8-290 (295)
4 PRK11272 putative DMT superfam 100.0 1.8E-26 4E-31 206.0 28.2 256 22-287 6-288 (292)
5 KOG2766 Predicted membrane pro 100.0 2.3E-30 5E-35 214.1 2.3 273 18-293 13-308 (336)
6 TIGR00817 tpt Tpt phosphate/ph 100.0 1.9E-26 4.2E-31 207.0 23.2 239 44-290 22-299 (302)
7 PRK11453 O-acetylserine/cystei 100.0 1E-25 2.2E-30 201.9 27.4 250 29-287 9-290 (299)
8 TIGR00950 2A78 Carboxylate/Ami 100.0 9.2E-26 2E-30 198.4 25.7 236 36-280 1-260 (260)
9 PRK10532 threonine and homoser 99.9 9.3E-25 2E-29 195.1 26.7 255 22-290 11-287 (293)
10 PRK15430 putative chlorampheni 99.9 5E-25 1.1E-29 197.2 24.3 250 21-285 6-286 (296)
11 PTZ00343 triose or hexose phos 99.9 1.2E-23 2.5E-28 192.0 27.1 234 44-285 69-349 (350)
12 TIGR03340 phn_DUF6 phosphonate 99.9 5.7E-22 1.2E-26 176.2 20.1 246 25-281 3-280 (281)
13 COG0697 RhaT Permeases of the 99.9 1.7E-19 3.6E-24 160.6 26.7 256 23-285 7-288 (292)
14 KOG4510 Permease of the drug/m 99.9 7.5E-23 1.6E-27 170.8 1.4 261 23-287 38-328 (346)
15 PF08449 UAA: UAA transporter 99.9 3.2E-19 6.9E-24 160.1 24.9 238 52-289 31-302 (303)
16 TIGR00688 rarD rarD protein. T 99.9 4.2E-19 9.1E-24 155.7 24.3 219 24-259 3-255 (256)
17 KOG2765 Predicted membrane pro 99.8 2.4E-18 5.2E-23 150.6 18.3 274 17-290 8-396 (416)
18 COG5006 rhtA Threonine/homoser 99.8 9.6E-17 2.1E-21 133.6 25.6 240 37-289 26-287 (292)
19 TIGR00776 RhaT RhaT L-rhamnose 99.8 2.7E-17 5.8E-22 146.5 22.4 248 29-284 6-288 (290)
20 KOG1441 Glucose-6-phosphate/ph 99.7 4E-18 8.7E-23 150.4 6.3 236 49-291 44-314 (316)
21 COG2962 RarD Predicted permeas 99.7 3.4E-15 7.4E-20 127.6 22.0 249 22-286 6-285 (293)
22 KOG2234 Predicted UDP-galactos 99.7 2.8E-13 6.1E-18 119.1 29.7 207 83-289 92-327 (345)
23 KOG3912 Predicted integral mem 99.7 3E-14 6.5E-19 120.3 20.0 248 37-284 16-334 (372)
24 PF04142 Nuc_sug_transp: Nucle 99.6 3.2E-14 6.9E-19 123.0 19.7 197 79-275 13-244 (244)
25 KOG1443 Predicted integral mem 99.6 6.9E-14 1.5E-18 119.7 19.7 231 48-285 40-316 (349)
26 KOG1581 UDP-galactose transpor 99.6 4.5E-13 9.8E-18 114.8 21.8 240 49-289 47-318 (327)
27 KOG1580 UDP-galactose transpor 99.6 4E-14 8.7E-19 116.7 12.5 235 53-288 53-317 (337)
28 COG2510 Predicted membrane pro 99.5 2.1E-13 4.6E-18 102.0 10.6 127 28-155 7-139 (140)
29 KOG1582 UDP-galactose transpor 99.5 6.6E-13 1.4E-17 111.8 14.7 267 17-287 36-335 (367)
30 PF00892 EamA: EamA-like trans 99.4 4.9E-12 1.1E-16 98.0 9.4 118 35-154 2-125 (126)
31 KOG1444 Nucleotide-sugar trans 99.3 2E-10 4.2E-15 99.9 19.8 245 40-291 28-307 (314)
32 KOG4314 Predicted carbohydrate 99.3 3.8E-11 8.2E-16 96.8 11.8 195 90-289 60-281 (290)
33 PF13536 EmrE: Multidrug resis 99.3 2.7E-11 5.8E-16 92.5 10.4 100 58-158 2-109 (113)
34 KOG1583 UDP-N-acetylglucosamin 99.2 1.6E-11 3.4E-16 103.9 5.2 256 31-286 10-316 (330)
35 KOG1442 GDP-fucose transporter 99.2 4.2E-12 9.1E-17 107.2 1.0 237 50-291 58-334 (347)
36 PF06800 Sugar_transport: Suga 99.2 5.7E-09 1.2E-13 90.2 18.9 198 81-281 43-268 (269)
37 TIGR00950 2A78 Carboxylate/Ami 99.1 5E-09 1.1E-13 91.9 15.2 130 22-151 127-260 (260)
38 COG2510 Predicted membrane pro 98.9 5.5E-08 1.2E-12 73.2 13.1 113 171-284 4-139 (140)
39 COG5070 VRG4 Nucleotide-sugar 98.9 7.8E-08 1.7E-12 79.3 14.8 239 48-288 32-300 (309)
40 TIGR00803 nst UDP-galactose tr 98.8 1.7E-07 3.6E-12 80.4 14.4 174 108-282 3-222 (222)
41 PRK11272 putative DMT superfam 98.8 1.6E-07 3.4E-12 84.0 14.1 130 23-155 150-285 (292)
42 PLN00411 nodulin MtN21 family 98.8 2.2E-07 4.7E-12 85.1 15.0 135 22-157 188-330 (358)
43 PF03151 TPT: Triose-phosphate 98.8 1.3E-07 2.8E-12 76.0 11.8 114 171-284 1-153 (153)
44 PRK10532 threonine and homoser 98.7 3.1E-07 6.8E-12 82.1 14.9 133 22-157 147-283 (293)
45 PF00892 EamA: EamA-like trans 98.7 1.1E-07 2.4E-12 73.3 8.4 103 180-283 1-125 (126)
46 PRK11689 aromatic amino acid e 98.6 1.3E-06 2.9E-11 78.1 14.2 128 23-155 156-287 (295)
47 PF05653 Mg_trans_NIPA: Magnes 98.6 5.7E-06 1.2E-10 73.9 17.9 64 94-157 61-124 (300)
48 PRK11453 O-acetylserine/cystei 98.6 2.8E-06 6E-11 76.3 15.7 136 22-157 142-289 (299)
49 PRK15051 4-amino-4-deoxy-L-ara 98.6 1.3E-06 2.8E-11 66.2 11.3 66 90-155 43-109 (111)
50 PRK13499 rhamnose-proton sympo 98.5 4.4E-05 9.6E-10 68.9 22.1 206 79-285 69-342 (345)
51 TIGR03340 phn_DUF6 phosphonate 98.5 6.5E-07 1.4E-11 79.6 9.8 68 85-152 212-280 (281)
52 TIGR00776 RhaT RhaT L-rhamnose 98.5 2.2E-06 4.9E-11 76.4 12.5 130 21-155 150-288 (290)
53 PRK15430 putative chlorampheni 98.5 3.9E-06 8.4E-11 75.2 13.9 71 86-156 216-286 (296)
54 PF03151 TPT: Triose-phosphate 98.5 7.9E-06 1.7E-10 65.6 14.1 128 25-152 2-150 (153)
55 TIGR00817 tpt Tpt phosphate/ph 98.4 2.8E-06 6.1E-11 76.3 12.1 135 22-157 144-295 (302)
56 COG0697 RhaT Permeases of the 98.3 2.5E-05 5.4E-10 69.2 15.9 132 21-155 152-287 (292)
57 KOG2922 Uncharacterized conser 98.3 4.3E-06 9.4E-11 73.1 10.1 69 90-158 70-139 (335)
58 PTZ00343 triose or hexose phos 98.2 4.1E-05 8.8E-10 70.2 14.6 132 22-154 193-347 (350)
59 TIGR00688 rarD rarD protein. T 98.1 3.4E-05 7.4E-10 67.5 11.9 112 170-283 2-141 (256)
60 PRK02971 4-amino-4-deoxy-L-ara 98.1 1.7E-05 3.7E-10 61.6 7.7 70 86-155 50-122 (129)
61 PRK02971 4-amino-4-deoxy-L-ara 97.9 9.3E-05 2E-09 57.5 9.6 109 170-287 2-125 (129)
62 PF06800 Sugar_transport: Suga 97.9 0.00014 2.9E-09 63.3 10.8 121 18-143 133-255 (269)
63 COG4975 GlcU Putative glucose 97.9 2.9E-07 6.3E-12 77.2 -5.5 247 30-283 8-284 (288)
64 PRK10650 multidrug efflux syst 97.8 0.00048 1E-08 51.6 10.9 66 88-153 40-106 (109)
65 PRK10452 multidrug efflux syst 97.7 0.0005 1.1E-08 52.4 9.8 64 93-156 40-104 (120)
66 COG2076 EmrE Membrane transpor 97.7 0.00048 1E-08 50.9 8.9 63 93-155 40-103 (106)
67 PRK10452 multidrug efflux syst 97.7 0.0023 5.1E-08 48.8 12.9 40 248-287 67-106 (120)
68 PRK11431 multidrug efflux syst 97.6 0.0012 2.6E-08 49.2 10.1 62 93-154 39-101 (105)
69 PF08449 UAA: UAA transporter 97.5 0.0024 5.3E-08 57.3 13.8 134 24-157 155-299 (303)
70 PRK09541 emrE multidrug efflux 97.5 0.0012 2.7E-08 49.6 9.8 62 94-155 41-103 (110)
71 PRK09541 emrE multidrug efflux 97.4 0.0056 1.2E-07 46.1 12.3 102 172-286 4-105 (110)
72 PRK15051 4-amino-4-deoxy-L-ara 97.4 0.004 8.8E-08 47.0 11.5 37 247-283 72-108 (111)
73 COG2962 RarD Predicted permeas 97.3 0.0039 8.4E-08 54.3 11.6 117 168-285 5-145 (293)
74 COG5006 rhtA Threonine/homoser 97.2 0.009 2E-07 50.9 12.0 104 52-155 175-282 (292)
75 PF04657 DUF606: Protein of un 97.2 0.014 3.1E-07 45.8 12.4 120 31-152 9-138 (138)
76 PF05653 Mg_trans_NIPA: Magnes 97.1 0.0043 9.3E-08 55.5 10.1 110 166-287 3-125 (300)
77 PF07857 DUF1632: CEO family ( 96.9 0.0075 1.6E-07 52.3 9.5 115 171-289 1-139 (254)
78 PF06027 DUF914: Eukaryotic pr 96.9 0.015 3.2E-07 52.7 11.8 51 237-287 104-154 (334)
79 PF00893 Multi_Drug_Res: Small 96.8 0.0085 1.8E-07 43.7 7.9 54 93-146 39-93 (93)
80 PF04657 DUF606: Protein of un 96.8 0.047 1E-06 42.9 12.1 111 171-281 2-138 (138)
81 PF10639 UPF0546: Uncharacteri 96.7 0.0027 5.8E-08 47.8 4.6 69 85-153 43-112 (113)
82 PRK11431 multidrug efflux syst 96.6 0.083 1.8E-06 39.3 11.9 38 248-285 66-103 (105)
83 KOG1441 Glucose-6-phosphate/ph 96.6 0.009 1.9E-07 53.5 7.6 135 21-156 161-308 (316)
84 PF13536 EmrE: Multidrug resis 96.6 0.0047 1E-07 46.8 5.1 45 243-287 65-109 (113)
85 PRK10650 multidrug efflux syst 96.5 0.1 2.2E-06 39.2 11.9 101 170-283 7-107 (109)
86 TIGR00803 nst UDP-galactose tr 96.5 0.027 5.9E-07 48.1 10.2 67 86-152 155-221 (222)
87 COG2076 EmrE Membrane transpor 96.3 0.15 3.2E-06 37.8 11.4 39 248-286 67-105 (106)
88 PF06379 RhaT: L-rhamnose-prot 96.2 0.91 2E-05 40.9 18.3 166 22-191 6-194 (344)
89 KOG1580 UDP-galactose transpor 96.1 0.056 1.2E-06 45.7 9.3 77 78-154 236-312 (337)
90 PRK13499 rhamnose-proton sympo 95.9 0.27 5.8E-06 44.7 13.4 69 87-156 264-342 (345)
91 COG4975 GlcU Putative glucose 95.8 0.0011 2.3E-08 56.2 -2.0 77 77-153 203-283 (288)
92 COG3238 Uncharacterized protei 95.8 0.38 8.1E-06 38.1 12.1 128 25-153 7-144 (150)
93 COG3238 Uncharacterized protei 95.6 0.42 9.1E-06 37.9 11.8 118 169-286 4-148 (150)
94 KOG4510 Permease of the drug/m 95.5 0.0074 1.6E-07 51.8 1.9 81 75-155 245-325 (346)
95 PF00893 Multi_Drug_Res: Small 95.1 0.41 8.9E-06 34.8 9.9 28 248-275 66-93 (93)
96 KOG1581 UDP-galactose transpor 94.9 0.19 4.2E-06 44.2 8.8 136 21-156 170-314 (327)
97 PF04142 Nuc_sug_transp: Nucle 94.6 0.12 2.5E-06 44.9 6.8 54 236-289 41-94 (244)
98 KOG2765 Predicted membrane pro 93.3 1.3 2.7E-05 40.4 10.7 137 21-158 245-393 (416)
99 PF07857 DUF1632: CEO family ( 93.3 1.7 3.7E-05 37.8 11.3 164 29-196 5-209 (254)
100 KOG2922 Uncharacterized conser 93.0 0.021 4.6E-07 50.5 -0.7 113 166-290 17-142 (335)
101 PF10639 UPF0546: Uncharacteri 92.5 0.35 7.6E-06 36.4 5.3 35 248-282 78-112 (113)
102 PRK02237 hypothetical protein; 90.6 4.8 0.0001 29.8 9.3 50 107-156 56-106 (109)
103 PF02694 UPF0060: Uncharacteri 89.1 3.9 8.5E-05 30.2 7.8 54 104-157 51-105 (107)
104 PF12811 BaxI_1: Bax inhibitor 88.7 16 0.00035 32.2 18.8 115 106-221 143-263 (274)
105 KOG4831 Unnamed protein [Funct 88.6 3.5 7.6E-05 30.3 7.2 70 85-154 54-124 (125)
106 PF02694 UPF0060: Uncharacteri 86.7 1.1 2.3E-05 33.1 3.8 40 248-287 67-106 (107)
107 PRK02237 hypothetical protein; 86.1 1.2 2.7E-05 32.9 3.8 39 248-286 69-107 (109)
108 KOG1442 GDP-fucose transporter 85.9 0.78 1.7E-05 39.9 3.1 137 21-157 183-329 (347)
109 COG5070 VRG4 Nucleotide-sugar 85.0 6.7 0.00015 33.3 8.1 106 49-155 182-296 (309)
110 KOG1582 UDP-galactose transpor 80.6 18 0.0004 31.7 9.2 73 86-158 263-335 (367)
111 COG1742 Uncharacterized conser 79.0 8.9 0.00019 28.2 5.9 45 113-157 62-106 (109)
112 KOG1444 Nucleotide-sugar trans 77.7 5.5 0.00012 35.5 5.5 76 82-157 227-302 (314)
113 PRK09412 anaerobic C4-dicarbox 75.7 48 0.001 31.5 11.6 33 122-156 6-38 (433)
114 COG2271 UhpC Sugar phosphate p 75.6 10 0.00022 35.6 6.8 39 248-287 169-208 (448)
115 PF04342 DUF486: Protein of un 74.4 33 0.00071 25.4 9.6 34 250-283 74-107 (108)
116 PF06570 DUF1129: Protein of u 74.0 45 0.00097 28.0 10.0 33 78-110 141-173 (206)
117 PF08507 COPI_assoc: COPI asso 72.3 4.6 0.0001 31.5 3.3 31 252-283 74-104 (136)
118 COG1742 Uncharacterized conser 72.3 7.8 0.00017 28.5 4.1 40 248-287 68-107 (109)
119 PF06379 RhaT: L-rhamnose-prot 71.9 27 0.00059 31.7 8.4 26 167-192 4-29 (344)
120 PF05684 DUF819: Protein of un 71.4 88 0.0019 29.1 12.8 81 131-213 13-98 (378)
121 PF04342 DUF486: Protein of un 71.2 5 0.00011 29.6 3.0 32 122-153 75-106 (108)
122 TIGR00770 Dcu anaerobic c4-dic 68.6 1E+02 0.0022 29.3 12.0 31 123-155 3-33 (430)
123 COG3169 Uncharacterized protei 67.2 12 0.00025 27.3 4.1 36 248-283 79-114 (116)
124 COG3169 Uncharacterized protei 67.2 9.3 0.0002 27.7 3.6 32 123-154 83-114 (116)
125 KOG1583 UDP-N-acetylglucosamin 65.8 46 0.001 29.4 8.2 48 110-157 269-316 (330)
126 KOG1443 Predicted integral mem 64.8 1.1E+02 0.0023 27.6 10.8 50 104-153 264-313 (349)
127 COG4858 Uncharacterized membra 62.2 89 0.0019 25.8 10.1 103 24-131 101-206 (226)
128 PF09656 PGPGW: Putative trans 60.0 37 0.00081 21.7 5.0 45 138-194 4-48 (53)
129 PF10749 DUF2534: Protein of u 59.6 58 0.0013 22.8 7.2 41 223-263 42-84 (85)
130 PF05297 Herpes_LMP1: Herpesvi 59.1 3.1 6.7E-05 36.3 0.0 74 102-180 42-117 (381)
131 PF03547 Mem_trans: Membrane t 53.4 91 0.002 28.7 8.8 8 249-256 112-119 (385)
132 TIGR00895 2A0115 benzoate tran 52.9 1.1E+02 0.0025 27.4 9.4 19 131-149 75-93 (398)
133 COG4657 RnfA Predicted NADH:ub 49.6 1.4E+02 0.003 24.1 8.0 79 128-213 90-181 (193)
134 PF10754 DUF2569: Protein of u 48.3 72 0.0016 25.2 6.2 74 120-194 67-145 (149)
135 KOG2322 N-methyl-D-aspartate r 46.6 68 0.0015 27.5 6.0 36 168-203 193-229 (237)
136 KOG3912 Predicted integral mem 46.5 2.2E+02 0.0047 25.5 10.8 50 104-153 283-332 (372)
137 PF11023 DUF2614: Protein of u 46.1 76 0.0016 23.8 5.4 24 132-155 5-28 (114)
138 TIGR00964 secE_bact preprotein 45.9 56 0.0012 20.9 4.3 36 10-45 16-51 (55)
139 COG2917 Intracellular septatio 44.7 1.7E+02 0.0037 23.8 8.0 90 97-192 10-100 (180)
140 TIGR00905 2A0302 transporter, 44.6 2.6E+02 0.0057 26.6 10.7 18 168-185 418-435 (473)
141 COG4760 Predicted membrane pro 44.0 1.9E+02 0.0042 24.3 12.0 105 114-220 149-264 (276)
142 TIGR00997 ispZ intracellular s 40.1 2E+02 0.0044 23.6 7.7 57 98-155 11-68 (178)
143 PF00584 SecE: SecE/Sec61-gamm 39.5 1E+02 0.0022 19.7 5.0 36 10-45 17-52 (57)
144 PF02487 CLN3: CLN3 protein; 38.6 3.4E+02 0.0074 25.5 13.7 40 117-156 68-109 (402)
145 KOG2766 Predicted membrane pro 38.4 77 0.0017 27.7 5.1 39 249-287 115-153 (336)
146 PF15345 TMEM51: Transmembrane 38.2 11 0.00025 31.9 0.2 22 269-290 66-87 (233)
147 PRK07597 secE preprotein trans 36.6 93 0.002 20.6 4.4 36 10-45 25-60 (64)
148 PF03605 DcuA_DcuB: Anaerobic 35.5 3.6E+02 0.0079 24.9 11.8 31 123-155 3-33 (364)
149 PF05977 MFS_3: Transmembrane 35.3 4.3E+02 0.0094 25.7 20.2 36 244-279 352-388 (524)
150 TIGR00145 FTR1 family protein. 34.1 3.4E+02 0.0073 24.1 13.8 25 13-37 33-57 (283)
151 KOG2533 Permease of the major 32.2 1.9E+02 0.0041 28.0 7.4 20 268-287 210-229 (495)
152 COG5505 Predicted integral mem 30.9 4.1E+02 0.0088 24.1 9.7 83 131-216 22-106 (384)
153 PF03348 Serinc: Serine incorp 30.7 4.8E+02 0.01 24.8 13.1 25 263-287 282-306 (429)
154 KOG2234 Predicted UDP-galactos 30.4 4.3E+02 0.0094 24.2 13.6 58 97-154 264-321 (345)
155 COG3086 RseC Positive regulato 29.8 96 0.0021 24.5 4.0 38 108-146 73-110 (150)
156 PF15048 OSTbeta: Organic solu 29.7 27 0.00058 26.6 0.9 10 258-267 26-35 (125)
157 PF11361 DUF3159: Protein of u 29.2 2E+02 0.0042 23.9 6.0 73 112-190 29-101 (187)
158 TIGR02840 spore_YtaF putative 28.2 1.3E+02 0.0028 25.3 5.0 46 238-283 33-80 (206)
159 PF06123 CreD: Inner membrane 27.7 5.1E+02 0.011 24.7 9.2 58 129-195 317-376 (430)
160 PF07168 Ureide_permease: Urei 27.2 16 0.00034 32.6 -0.7 107 30-138 2-127 (336)
161 PF04246 RseC_MucC: Positive r 27.0 1.1E+02 0.0023 23.7 4.0 42 108-150 66-107 (135)
162 PF12606 RELT: Tumour necrosis 26.9 49 0.0011 20.9 1.6 13 276-288 15-27 (50)
163 COG0690 SecE Preprotein transl 26.8 1.6E+02 0.0034 20.2 4.3 36 10-45 35-70 (73)
164 COG0670 Integral membrane prot 26.2 4.2E+02 0.0091 22.8 17.7 27 169-195 170-196 (233)
165 PRK02935 hypothetical protein; 25.9 2.1E+02 0.0045 21.3 4.9 25 131-155 5-29 (110)
166 PF10131 PTPS_related: 6-pyruv 25.2 7E+02 0.015 25.0 16.1 64 86-152 54-117 (616)
167 PRK12489 anaerobic C4-dicarbox 25.1 6.1E+02 0.013 24.2 14.0 32 122-155 6-37 (443)
168 PRK13108 prolipoprotein diacyl 25.1 82 0.0018 30.1 3.5 23 264-286 254-276 (460)
169 PRK11089 PTS system glucose-sp 24.9 5E+02 0.011 25.1 8.7 94 11-107 269-379 (477)
170 PF14351 DUF4401: Domain of un 24.5 5.2E+02 0.011 23.2 15.1 63 124-191 262-325 (326)
171 KOG3747 Concentrative Na+-nucl 24.3 6.7E+02 0.014 24.4 11.3 111 99-215 165-281 (602)
172 PF02447 GntP_permease: GntP f 23.9 6.4E+02 0.014 24.0 10.7 20 258-277 165-184 (441)
173 PRK05740 secE preprotein trans 23.4 1.7E+02 0.0038 21.0 4.2 37 10-46 51-87 (92)
174 TIGR01167 LPXTG_anchor LPXTG-m 22.8 99 0.0021 17.2 2.3 20 264-283 10-29 (34)
175 PRK10862 SoxR reducing system 22.4 1.3E+02 0.0028 24.0 3.8 24 107-130 72-95 (154)
176 PRK10213 nepI ribonucleoside t 22.1 6.1E+02 0.013 23.2 11.7 43 108-150 53-97 (394)
177 PF02592 DUF165: Uncharacteriz 22.0 3.9E+02 0.0084 20.8 6.7 33 6-38 15-47 (145)
178 PRK11715 inner membrane protei 21.8 7E+02 0.015 23.8 9.3 55 131-194 325-381 (436)
179 PRK15071 lipopolysaccharide AB 21.7 3.5E+02 0.0076 24.6 7.0 41 24-64 304-344 (356)
180 PF06123 CreD: Inner membrane 21.4 7.1E+02 0.015 23.7 12.5 80 76-155 318-398 (430)
181 PRK11715 inner membrane protei 20.7 7.4E+02 0.016 23.6 12.5 79 76-154 324-403 (436)
182 TIGR02611 conserved hypothetic 20.6 3.9E+02 0.0085 20.4 5.7 44 138-193 28-71 (121)
183 PF13127 DUF3955: Protein of u 20.5 2.4E+02 0.0053 18.7 4.1 39 19-57 2-41 (63)
184 PF15102 TMEM154: TMEM154 prot 20.3 1.1E+02 0.0025 24.1 2.9 22 269-290 66-87 (146)
185 COG0795 Predicted permeases [G 20.0 3E+02 0.0064 25.2 6.2 28 33-60 319-346 (364)
No 1
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=100.00 E-value=4.4e-37 Score=273.67 Aligned_cols=277 Identities=40% Similarity=0.745 Sum_probs=247.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhcccc------cchhhHHHHHH
Q 020761 16 QMALRTLYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQR------LQVSWYWYLLL 89 (321)
Q Consensus 16 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~------~~~~~~~~~~~ 89 (321)
..+|+.++++++++++|+++.+++.....+.+.+...|..+++..+....++..+...+|++. .+++|++++++
T Consensus 6 ~~~~~~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~ll 85 (334)
T PF06027_consen 6 LFTRRFWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLL 85 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHH
Confidence 367888999999999999999999999999999998899999999999888888776655432 57789999999
Q ss_pred HHHHHHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcccccccc--CCCCCc
Q 020761 90 GFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMA--GGGGSR 167 (321)
Q Consensus 90 g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~~--~~~~~~ 167 (321)
+++++.+|++.+.|++|++.+.++++.++..+++++++++++|||+++.|++|++++++|+.++...|...+ +..+++
T Consensus 86 a~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~ 165 (334)
T PF06027_consen 86 ALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSN 165 (334)
T ss_pred HHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999886422 123467
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHhhcccccccccchhhHH------------
Q 020761 168 PLLGDILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIL------------ 235 (321)
Q Consensus 168 ~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~------------ 235 (321)
...|++++++|+++||+++++.|+..|+.+..++.++..+++.++..+....+|..++....|.+...
T Consensus 166 ~i~GDll~l~~a~lya~~nV~~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~~i~~~~w~~~~~~~~v~~~~~lf~ 245 (334)
T PF06027_consen 166 PILGDLLALLGAILYAVSNVLEEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERSGIESIHWTSQVIGLLVGYALCLFL 245 (334)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehhhhhccCCChhhHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999998888888887777666655432
Q ss_pred -----------HhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccCCCCCCC
Q 020761 236 -----------SGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDLLPI 292 (321)
Q Consensus 236 -----------~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~~ 292 (321)
.+|...|++.++..+++++++++++|+++++..++|.++|++|.++|+..++++.++
T Consensus 246 ~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~~~~ 313 (334)
T PF06027_consen 246 FYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPEEEA 313 (334)
T ss_pred HHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCccccc
Confidence 777888888889999999999999999999999999999999999999887765544
No 2
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.97 E-value=2.5e-29 Score=228.58 Aligned_cols=271 Identities=15% Similarity=0.134 Sum_probs=204.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhcc--cc-c---chhhHHHHHHHHH
Q 020761 19 LRTLYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRR--QR-L---QVSWYWYLLLGFV 92 (321)
Q Consensus 19 ~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~--~~-~---~~~~~~~~~~g~~ 92 (321)
++..+....++++-+.-.+.....+...+.+. +|+.+.++|+.+++++++++.+.++ ++ . ++++..+.+.|++
T Consensus 9 ~~~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~-~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~ 87 (358)
T PLN00411 9 RREAVFLTAMLATETSVVGISTLFKVATSKGL-NIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFL 87 (358)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHHHHHCCC-CccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHH
Confidence 33445555556666677777777777777788 9999999999999999988765432 11 2 3455667778888
Q ss_pred HHHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHH------hhcchhHHHHHHHHHHHHhhhhhccccccc------
Q 020761 93 DVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVF------LGTRYSVWQLFGASLCVLGLGLMLLSDAEM------ 160 (321)
Q Consensus 93 ~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~------l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~------ 160 (321)
+...+.+++.|++|+++++++++.+++|+++.++++++ +|||+++++++|++++++|+.++...+...
T Consensus 88 g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~ 167 (358)
T PLN00411 88 GSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASS 167 (358)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccc
Confidence 74446789999999999999999999999999999999 699999999999999999999987532100
Q ss_pred -----------cCCC-CCcchhhhHHHHHHHHHHHHHHHHHHHhhccCChh-hHHHHHHHHHHHHHHHHHHhhccccccc
Q 020761 161 -----------AGGG-GSRPLLGDILVIAGAIFFAMSYVGEEFLVKKIDRV-EVVCMIGVYGLLVSVVQLSTLELKSLES 227 (321)
Q Consensus 161 -----------~~~~-~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 227 (321)
+... ..+...|+.++++++++||+|.+++|+..+++++. ..++++..++.+...++....+..+.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~ 247 (358)
T PLN00411 168 PPYLNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSV 247 (358)
T ss_pred cccccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCccc
Confidence 0001 11234699999999999999999999998888554 5566777766666645555444321111
Q ss_pred --ccchh---hHH-------------------HhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheee
Q 020761 228 --VKWST---DIL-------------------SGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYS 283 (321)
Q Consensus 228 --~~~~~---~~~-------------------~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 283 (321)
..|.. .++ .++..+++..+++|+++++++++++||++++.+++|+++|+.|+++..
T Consensus 248 ~~~~~~~~~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~ 327 (358)
T PLN00411 248 WIIHFDITLITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVM 327 (358)
T ss_pred ceeccchHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 11110 000 778888888889999999999999999999999999999999999988
Q ss_pred ccCCCCC
Q 020761 284 TTAKDLL 290 (321)
Q Consensus 284 ~~~~~~~ 290 (321)
+.+++|.
T Consensus 328 ~~~~~~~ 334 (358)
T PLN00411 328 WGKANEE 334 (358)
T ss_pred hhhhhhh
Confidence 7665543
No 3
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.96 E-value=4.8e-27 Score=210.03 Aligned_cols=254 Identities=13% Similarity=0.115 Sum_probs=186.4
Q ss_pred HHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHH-HHHHHHhhhc
Q 020761 28 GQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQRLQVSWYWYLLLGFVDVQG-NFLFNKAFQF 106 (321)
Q Consensus 28 ~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~al~~ 106 (321)
..+.+.+.|+++++..|...+++ +|..+.++|+.++++++.++.. +++.+++++...+.+.++... +.+++.+++|
T Consensus 8 ~~l~a~~~Wg~~~~~~k~~~~~~-~P~~~~~~R~~~a~l~l~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~ 84 (295)
T PRK11689 8 IGLIAILLWSTMVGLIRGVSESL-GPVGGAAMIYSVSGLLLLLTVG--FPRLRQFPKRYLLAGGLLFVSYEICLALSLGY 84 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHccC-ChHHHHHHHHHHHHHHHHHHcc--ccccccccHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 35777888999999999998888 9999999999999998876532 222233333455555555544 6667777754
Q ss_pred ----chhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccccccccC----CCCCcchhhhHHHHHH
Q 020761 107 ----TSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAG----GGGSRPLLGDILVIAG 178 (321)
Q Consensus 107 ----~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~~~----~~~~~~~~G~~l~l~a 178 (321)
.++++++++.+++|+++.+++++++|||++++++++++++++|+.++..++...+. ....+...|+++++++
T Consensus 85 ~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l~a 164 (295)
T PRK11689 85 ANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAFIG 164 (295)
T ss_pred hhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHHHH
Confidence 57788899999999999999999999999999999999999999999875431010 0111335699999999
Q ss_pred HHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHhhcccc--cccccchhhHH------------------HhH
Q 020761 179 AIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKS--LESVKWSTDIL------------------SGA 238 (321)
Q Consensus 179 a~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~------------------~~a 238 (321)
+++||.|.++.||..++.++..... ..+.+....+....+... .+...|..... .++
T Consensus 165 a~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a 241 (295)
T PRK11689 165 AFIWAAYCNVTRKYARGKNGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNM 241 (295)
T ss_pred HHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCH
Confidence 9999999999999987777654322 223333312222222111 11111211111 677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccCC
Q 020761 239 TMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAK 287 (321)
Q Consensus 239 ~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 287 (321)
...+...+++|+++++++++++||++++.+++|+++|+.|+++....++
T Consensus 242 ~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~~ 290 (295)
T PRK11689 242 TLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLATR 290 (295)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhHh
Confidence 7888888899999999999999999999999999999999988765543
No 4
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.96 E-value=1.8e-26 Score=206.05 Aligned_cols=256 Identities=14% Similarity=0.091 Sum_probs=199.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhccc--ccchhhHHHHHHHHHHHHH-HH
Q 020761 22 LYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQ--RLQVSWYWYLLLGFVDVQG-NF 98 (321)
Q Consensus 22 ~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~--~~~~~~~~~~~~g~~~~~~-~~ 98 (321)
...+++..+...++|+++++..|...++. +|..++++|+.+++++++++...+++ +.++++......|.++... +.
T Consensus 6 ~~~~~~~~~~~~~iWg~~~~~~K~~~~~~-~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (292)
T PRK11272 6 LLPLFGALFALYIIWGSTYLVIRIGVESW-PPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNG 84 (292)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888899999999999887777 99999999999999998887654432 3455677677788776444 77
Q ss_pred HHHHhh-hcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccccccccCCCCCcchhhhHHHHH
Q 020761 99 LFNKAF-QFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIA 177 (321)
Q Consensus 99 ~~~~al-~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~ 177 (321)
+++.+. ++++++.++++.++.|+++.+++++ +|||++++++++++++++|+.++...+. . +....|++++++
T Consensus 85 ~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~-----~-~~~~~G~l~~l~ 157 (292)
T PRK11272 85 MVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGN-----L-SGNPWGAILILI 157 (292)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcc-----c-ccchHHHHHHHH
Confidence 888888 9999999999999999999999986 6999999999999999999998865221 1 234579999999
Q ss_pred HHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHhh-cccc-c--ccccchhhHH------------------
Q 020761 178 GAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTL-ELKS-L--ESVKWSTDIL------------------ 235 (321)
Q Consensus 178 aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~-~--~~~~~~~~~~------------------ 235 (321)
++++||.+.+..||..++ ++...+.+....+.... .+.... +... . +...|.....
T Consensus 158 a~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~ 235 (292)
T PRK11272 158 ASASWAFGSVWSSRLPLP-VGMMAGAAEMLAAGVVL-LIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISAYMYLLR 235 (292)
T ss_pred HHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHH-HHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999997644 44555667777777766 333322 2211 1 1112322111
Q ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccCC
Q 020761 236 -SGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAK 287 (321)
Q Consensus 236 -~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 287 (321)
.++...+...+++|+++++++++++||++++.+++|+.+++.|+++.++.++
T Consensus 236 ~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 236 NVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677777788899999999999999999999999999999999998876544
No 5
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.96 E-value=2.3e-30 Score=214.10 Aligned_cols=273 Identities=43% Similarity=0.833 Sum_probs=246.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHH
Q 020761 18 ALRTLYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQRLQVSWYWYLLLGFVDVQGN 97 (321)
Q Consensus 18 ~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 97 (321)
.||.++++.+++.+++++.++++....++.++...|..+++..+...+++..++..+|++-.+..|+.|++++++++-+|
T Consensus 13 tkk~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~~~~~~~hYilla~~DVEaN 92 (336)
T KOG2766|consen 13 TKKTLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKYIKAKWRHYILLAFVDVEAN 92 (336)
T ss_pred chhhhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHhhheeEEeeccc
Confidence 67789999999999999999999999999998889999999999999999999999888878888999999999999999
Q ss_pred HHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcccccc-ccCCCCCcchhhhHHHH
Q 020761 98 FLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAE-MAGGGGSRPLLGDILVI 176 (321)
Q Consensus 98 ~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~-~~~~~~~~~~~G~~l~l 176 (321)
++...|.||++...++++.+-..+.+.+++|+|+|.|.++.++.|+++|++|+.+++..|.+ ++.+.+++..+|+.+.+
T Consensus 93 y~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi 172 (336)
T KOG2766|consen 93 YFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVI 172 (336)
T ss_pred EEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999976 45556778899999999
Q ss_pred HHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHhhcccccccccchhhHH---------------------
Q 020761 177 AGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIL--------------------- 235 (321)
Q Consensus 177 ~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--------------------- 235 (321)
++|-+||+.++..+.+.|+.|..+.+....++|+++..+. ..++........|.+.+.
T Consensus 173 ~GATlYaVSNv~EEflvkn~d~~elm~~lgLfGaIIsaIQ-~i~~~~~~~tl~w~~~i~~yl~f~L~MFllYsl~pil~k 251 (336)
T KOG2766|consen 173 AGATLYAVSNVSEEFLVKNADRVELMGFLGLFGAIISAIQ-FIFERHHVSTLHWDSAIFLYLRFALTMFLLYSLAPILIK 251 (336)
T ss_pred ecceeeeeccccHHHHHhcCcHHHHHHHHHHHHHHHHHHH-HhhhccceeeEeehHHHHHHHHHHHHHHHHHHhhHHhee
Confidence 9999999999999999999999999999999999999777 667777766667754332
Q ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccCCCCCCCC
Q 020761 236 -SGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDLLPIP 293 (321)
Q Consensus 236 -~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~~~ 293 (321)
.+++..|++.+++..|+++. ..||-..+|...+..+.+..|.++|..+++.+++.+
T Consensus 252 ~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~re~~~~e~r 308 (336)
T KOG2766|consen 252 TNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTREKDEEELR 308 (336)
T ss_pred cCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeeccccCcHhhc
Confidence 77888888888999999988 567777999999999999999999977766555443
No 6
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.95 E-value=1.9e-26 Score=207.02 Aligned_cols=239 Identities=11% Similarity=0.090 Sum_probs=189.7
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHHhh---hc-ccccchhhHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHhhcCc
Q 020761 44 VITDLGVDAPITQSVLCYLSLALAYGGILL---YR-RQRLQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCA 119 (321)
Q Consensus 44 ~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~---~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~ 119 (321)
|...+++.+|...++.|+.++.+.+.+... ++ ++..+++++..+..|+++.....+.+.+++|++++.++++.++.
T Consensus 22 K~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~ 101 (302)
T TIGR00817 22 KKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAME 101 (302)
T ss_pred HHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcc
Confidence 444456668999999999998877665421 12 22346688888999999766688999999999999999999999
Q ss_pred hHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccccccccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhc--cCC
Q 020761 120 IPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVK--KID 197 (321)
Q Consensus 120 pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~--~~~ 197 (321)
|+++++++++++|||++++++.+++++++|+.+....+ .+....|++++++++++|+++.+..||..+ +.|
T Consensus 102 Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~-------~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~ 174 (302)
T TIGR00817 102 PFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTE-------LSFNWAGFLSAMISNITFVSRNIFSKKAMTIKSLD 174 (302)
T ss_pred hHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCc-------ccccHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 99999999999999999999999999999998764321 123457999999999999999999999988 789
Q ss_pred hhhHHHHHHHHHHHHHHHHHHh-hccccccc---------cc----chhhHH-------------------HhHHHHHHH
Q 020761 198 RVEVVCMIGVYGLLVSVVQLST-LELKSLES---------VK----WSTDIL-------------------SGATMLILS 244 (321)
Q Consensus 198 ~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~---------~~----~~~~~~-------------------~~a~~~~~~ 244 (321)
+.+.+.++...+++.. .|... .+...... .. |..... .++...++.
T Consensus 175 ~~~~~~~~~~~~~~~l-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~ 253 (302)
T TIGR00817 175 KTNLYAYISIMSLFLL-SPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVG 253 (302)
T ss_pred cccHHHHHHHHHHHHH-HHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHH
Confidence 9999999999998887 55433 33211000 00 100000 566667777
Q ss_pred HHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccCCCCC
Q 020761 245 VLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDLL 290 (321)
Q Consensus 245 ~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~ 290 (321)
.+++|+++++++++++||++++.+++|+++++.|++++++.+++|+
T Consensus 254 ~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~~~ 299 (302)
T TIGR00817 254 NCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQKP 299 (302)
T ss_pred hhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhccCc
Confidence 7789999999999999999999999999999999999997665443
No 7
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.95 E-value=1e-25 Score=201.91 Aligned_cols=250 Identities=15% Similarity=0.134 Sum_probs=181.9
Q ss_pred HHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHH-HHHHHHhhhc-
Q 020761 29 QLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQRLQVSWYWYLLLGFVDVQG-NFLFNKAFQF- 106 (321)
Q Consensus 29 ~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~al~~- 106 (321)
.+++.++|+++++..|...++. +|..+.++|+.++++.+.++..+++ .+++.....|...... ..+++.+++|
T Consensus 9 ~l~~~~~Wg~~~~~~k~~~~~~-~p~~~~~~R~~~a~~~l~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 83 (299)
T PRK11453 9 ALLVVVVWGLNFVVIKVGLHNM-PPLMLAGLRFMLVAFPAIFFVARPK----VPLNLLLGYGLTISFGQFAFLFCAINFG 83 (299)
T ss_pred HHHHHHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHhcCCC----CchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5677899999999999887787 9999999999998776655443222 2233344445554444 5577889988
Q ss_pred chhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccccccccCCCCCcchhhhHHHHHHHHHHHHHH
Q 020761 107 TSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSY 186 (321)
Q Consensus 107 ~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~ 186 (321)
.+++.++++.+++|+++.+++++++|||++++++++++++++|+.++..++. + ..+.+..|++++++++++|+.|.
T Consensus 84 ~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~---~-~~~~~~~G~~l~l~aal~~a~~~ 159 (299)
T PRK11453 84 MPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSL---N-GQHVAMLGFMLTLAAAFSWACGN 159 (299)
T ss_pred CCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccC---C-CcchhHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999999999999999999999999999886432 1 11223579999999999999999
Q ss_pred HHHHHhhccCChh---hHHHHHHHHHHHHHHHHHHhhcccc--------cccccchhhHH-------------------H
Q 020761 187 VGEEFLVKKIDRV---EVVCMIGVYGLLVSVVQLSTLELKS--------LESVKWSTDIL-------------------S 236 (321)
Q Consensus 187 v~~k~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~-------------------~ 236 (321)
++.||..++.+.. ....+....+.+.........+.+. .+...|..... .
T Consensus 160 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~ 239 (299)
T PRK11453 160 IFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAFVATIVGYGIWGTLLGRY 239 (299)
T ss_pred HHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999986655433 2334444444332212112222211 11111221111 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccCC
Q 020761 237 GATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAK 287 (321)
Q Consensus 237 ~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 287 (321)
++...+...+++|+++.+++++++||++++.+++|+++|+.|+++..+.++
T Consensus 240 ~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 240 ETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 556666777789999999999999999999999999999999998776554
No 8
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.95 E-value=9.2e-26 Score=198.36 Aligned_cols=236 Identities=17% Similarity=0.096 Sum_probs=186.9
Q ss_pred HhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHH-HHHHHHhhhcchhhHHHH
Q 020761 36 ALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQRLQVSWYWYLLLGFVDVQG-NFLFNKAFQFTSISSVTL 114 (321)
Q Consensus 36 ~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~al~~~~~~~~~~ 114 (321)
||++++..|...++..+|....+.|++.+.+.+.+...++ +.++++++++..|.++... +.++++|++|++++++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~i 78 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR--PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAAL 78 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc--cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHH
Confidence 7788888888765555889999999988888877665544 4555667788888877666 889999999999999999
Q ss_pred hhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccccccccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhc
Q 020761 115 LDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVK 194 (321)
Q Consensus 115 i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~ 194 (321)
+.++.|+++.+++++++|||++++++.+++++++|+.++...+. .+.+..|+.+++.++++|+.+.+..|+..+
T Consensus 79 i~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~------~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~ 152 (260)
T TIGR00950 79 LLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGN------LSINPAGLLLGLGSGISFALGTVLYKRLVK 152 (260)
T ss_pred HHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCc------ccccHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 99999999999999999999999999999999999999875321 224468999999999999999999999987
Q ss_pred cCChh--hHHHHHHHHHHHHHHHHHHhhcccccc--cccchhhHH-------------------HhHHHHHHHHHHHHHH
Q 020761 195 KIDRV--EVVCMIGVYGLLVSVVQLSTLELKSLE--SVKWSTDIL-------------------SGATMLILSVLTSDMW 251 (321)
Q Consensus 195 ~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~-------------------~~a~~~~~~~~~~pv~ 251 (321)
+.++. ....+.+.++.++. .+.........+ ...|..... .++...+...+++|++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~ 231 (260)
T TIGR00950 153 KEGPELLQFTGWVLLLGALLL-LPFAWFLGPNPQALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLV 231 (260)
T ss_pred cCCchHHHHHHHHHHHHHHHH-HHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 77644 44446677777766 554433322211 112321111 6677777778899999
Q ss_pred HHHHHHHHhcccchHHHHhHHHHHhhhhh
Q 020761 252 AVILRIFCYHQQVNWTYYLAFAAVLIGLI 280 (321)
Q Consensus 252 ~~~~~~~~~~e~~~~~~~~G~~li~~g~~ 280 (321)
+++++++++||++++.++.|+.+++.|+.
T Consensus 232 ~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 232 ALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999863
No 9
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.94 E-value=9.3e-25 Score=195.11 Aligned_cols=255 Identities=15% Similarity=0.081 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhcc-cccchhhHHHHHHHHHHHHHHHHH
Q 020761 22 LYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRR-QRLQVSWYWYLLLGFVDVQGNFLF 100 (321)
Q Consensus 22 ~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~ 100 (321)
.+++.. .+++.+.|+++....|...++. +|..+.++|+++++++++++..+++ +..+++++..+..|.+....+.++
T Consensus 11 ~~~~~~-~~la~~~~~~~~~~~K~~~~~~-~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 88 (293)
T PRK10532 11 WLPILL-LLIAMASIQSGASLAKSLFPLV-GAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGMNYLF 88 (293)
T ss_pred chHHHH-HHHHHHHHHhhHHHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 5677777777777777777677 9999999999999988887654333 234556777778888766668889
Q ss_pred HHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccccccccCCCCCcchhhhHHHHHHHH
Q 020761 101 NKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAI 180 (321)
Q Consensus 101 ~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~ 180 (321)
+++++|+|++.++++.++.|+++.+++ +||+++. .++.++++|+.++...+. + .++.+..|+++++++++
T Consensus 89 ~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~li~~~~~--~--~~~~~~~G~ll~l~aa~ 158 (293)
T PRK10532 89 YLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWFLLPLGQ--D--VSHVDLTGAALALGAGA 158 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHHH--HHHHHHHHHHheeeecCC--C--cccCChHHHHHHHHHHH
Confidence 999999999999999999999999887 3666544 456778999998875332 1 12234579999999999
Q ss_pred HHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHhhcccccc--cccchhhHH-------------------HhHH
Q 020761 181 FFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLE--SVKWSTDIL-------------------SGAT 239 (321)
Q Consensus 181 ~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~-------------------~~a~ 239 (321)
+||.|.+..||..++.++... .+...+++++. .+....+....+ ...|..... .++.
T Consensus 159 ~~a~~~v~~r~~~~~~~~~~~-~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~ 236 (293)
T PRK10532 159 CWAIYILSGQRAGAEHGPATV-AIGSLIAALIF-VPIGALQAGEALWHWSILPLGLAVAILSTALPYSLEMIALTRLPTR 236 (293)
T ss_pred HHHHHHHHHHHHhccCCchHH-HHHHHHHHHHH-HHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 999999999999877777665 45555666555 444443322111 111211111 7778
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccCCCCC
Q 020761 240 MLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDLL 290 (321)
Q Consensus 240 ~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~ 290 (321)
..+...+++|+++.+++++++||++++.+++|+.+|+.|++...++.+++.
T Consensus 237 ~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~~~ 287 (293)
T PRK10532 237 TFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRREP 287 (293)
T ss_pred HHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 888888899999999999999999999999999999999999987665443
No 10
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.94 E-value=5e-25 Score=197.15 Aligned_cols=250 Identities=15% Similarity=0.079 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhccc--c----c-chhhHHHHHHHHHH
Q 020761 21 TLYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQ--R----L-QVSWYWYLLLGFVD 93 (321)
Q Consensus 21 ~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~--~----~-~~~~~~~~~~g~~~ 93 (321)
..+|.+.. +.+.+.|+.+....|.. ++. +|.++.++|+.++.+++.++...+++ . . +++.......+.++
T Consensus 6 ~~~g~~~~-l~a~~~wg~~~~~~k~~-~~~-~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (296)
T PRK15430 6 TRQGVLLA-LAAYFIWGIAPAYFKLI-YYV-PADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAVL 82 (296)
T ss_pred hhhHHHHH-HHHHHHHHHHHHHHHHh-cCC-CHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHHH
Confidence 34666554 55566677766666765 466 99999999999998877766543221 1 1 11111233455555
Q ss_pred HHH-HHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccccccccCCCCCcchhhh
Q 020761 94 VQG-NFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGD 172 (321)
Q Consensus 94 ~~~-~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~ 172 (321)
... +.++++|++++|+++++++.++.|+++++++++++|||++++++.+++++++|+.++..++. +. .
T Consensus 83 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~-------~~----~ 151 (296)
T PRK15430 83 IGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG-------SL----P 151 (296)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC-------Cc----c
Confidence 555 88999999999999999999999999999999999999999999999999999999875321 11 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCC--hhhHHHHHHHHHHHHHHHHHHhhcccccccccch--h-hHH------------
Q 020761 173 ILVIAGAIFFAMSYVGEEFLVKKID--RVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWS--T-DIL------------ 235 (321)
Q Consensus 173 ~l~l~aa~~~a~~~v~~k~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~-~~~------------ 235 (321)
+++++++++||.|.+..||..++.. ......+...++.+.. .+............++. . ...
T Consensus 152 ~~~l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~i~~~~~ 230 (296)
T PRK15430 152 IIALGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYL-FAIADSSTSHMGQNPMSLNLLLIAAGIVTTVPLLCF 230 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHH-HHHccCCcccccCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 5688899999999999998753221 2233344444443332 22111111111111121 1 110
Q ss_pred ------HhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeecc
Q 020761 236 ------SGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTT 285 (321)
Q Consensus 236 ------~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 285 (321)
.++...+...+++|+++++++++++||++++.+++|+++|+.|+.+....
T Consensus 231 ~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 231 TAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888999999999999999999999999999998887766543
No 11
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.93 E-value=1.2e-23 Score=192.03 Aligned_cols=234 Identities=15% Similarity=0.136 Sum_probs=182.1
Q ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHHhhh--cc-cc---cchhhHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHhhc
Q 020761 44 VITDLGVDAPITQSVLCYLSLALAYGGILLY--RR-QR---LQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDC 117 (321)
Q Consensus 44 ~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~--~~-~~---~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~ 117 (321)
|...+.++.|..++.+|++++.+++..+... ++ ++ .+.+++..+..|+++...+...+.|+++++++.++++.+
T Consensus 69 K~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~~svs~~~iika 148 (350)
T PTZ00343 69 KLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGLGAVSFTHVVKA 148 (350)
T ss_pred HHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 4444567339999999999997766544322 11 21 234677888999999888777789999999999999999
Q ss_pred CchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccccccccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCC
Q 020761 118 CAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVKKID 197 (321)
Q Consensus 118 ~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~ 197 (321)
+.|+++++++++++|||++++++.+++++++|+.+....+. +.+..|++++++|+++++++.+..|+..++.+
T Consensus 149 ~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~-------~~~~~G~~~~l~s~~~~a~~~i~~k~~~~~~~ 221 (350)
T PTZ00343 149 AEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKEL-------HFTWLAFWCAMLSNLGSSLRSIFAKKTMKNKS 221 (350)
T ss_pred hhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999876332 23467999999999999999999999887543
Q ss_pred -------hhhHHHHHHHHHHHHHHHHHHh-hccccc---------ccccchh--h---HH-------------------H
Q 020761 198 -------RVEVVCMIGVYGLLVSVVQLST-LELKSL---------ESVKWST--D---IL-------------------S 236 (321)
Q Consensus 198 -------~~~~~~~~~~~~~~~~~i~~~~-~~~~~~---------~~~~~~~--~---~~-------------------~ 236 (321)
+.....+....++++. +|... .|.... +...+.. . ++ .
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~-lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~ 300 (350)
T PTZ00343 222 EIGENLTASNIYMLLTLIASLIS-LPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKV 300 (350)
T ss_pred cccccCCHHHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4445555577788777 55543 432110 0001110 0 00 6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeecc
Q 020761 237 GATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTT 285 (321)
Q Consensus 237 ~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 285 (321)
++...++...++|+++++++++++||++++.+++|.++++.|+++|++.
T Consensus 301 s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 301 NQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred chhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 6777778888999999999999999999999999999999999999864
No 12
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.89 E-value=5.7e-22 Score=176.20 Aligned_cols=246 Identities=14% Similarity=0.095 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhc-----ccccchhhHHHHHHHHH-HHHHHH
Q 020761 25 LLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYR-----RQRLQVSWYWYLLLGFV-DVQGNF 98 (321)
Q Consensus 25 ~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~-----~~~~~~~~~~~~~~g~~-~~~~~~ 98 (321)
+++.++.++.+...+...++...++ ++. .+++....++++.++...+ +++.+++++.....+.+ +...+.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~--~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE--PDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFL 78 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch--hHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 3455556666666677777666542 443 3666666676776665432 22233444445455554 444588
Q ss_pred HHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccccccccCCCCCcchhhhHHHHHH
Q 020761 99 LFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAG 178 (321)
Q Consensus 99 ~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~a 178 (321)
++++|+++.++++++++.++.|+++.+++++++|||+++++++|+.+++.|+.++..++. . ..+..|+.+++++
T Consensus 79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~---~---~~~~~g~~~~l~a 152 (281)
T TIGR03340 79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRF---A---QHRRKAYAWALAA 152 (281)
T ss_pred HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccc---c---ccchhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999876432 1 1234688899999
Q ss_pred HHHHHHHHHHHHHhhccCChhhH----HHHHHHHH-HHHHHHHHHhhcccccccc--cchhhHH----------------
Q 020761 179 AIFFAMSYVGEEFLVKKIDRVEV----VCMIGVYG-LLVSVVQLSTLELKSLESV--KWSTDIL---------------- 235 (321)
Q Consensus 179 a~~~a~~~v~~k~~~~~~~~~~~----~~~~~~~~-~~~~~i~~~~~~~~~~~~~--~~~~~~~---------------- 235 (321)
+++|+.|.+..|+..++.++... ..+..... ..+. ......+....... .+.....
T Consensus 153 al~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~~l~~~a 231 (281)
T TIGR03340 153 ALGTAIYSLSDKAAALGVPAFYSALGYLGIGFLAMGWPFL-LLYLKRHGRSMFPYARQILPSATLGGLMIGGAYALVLWA 231 (281)
T ss_pred HHHHHHhhhhccccccchhcccccHHHHHHHHHHHHHHHH-HHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887555444322 22222222 1111 11111111111111 1111111
Q ss_pred ---HhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhhe
Q 020761 236 ---SGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLII 281 (321)
Q Consensus 236 ---~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l 281 (321)
.++...+...+++|+++.+++++++||+++..+++|+.+++.|+++
T Consensus 232 l~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 232 MTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 2222222233378999999999999999999999999999999875
No 13
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.87 E-value=1.7e-19 Score=160.62 Aligned_cols=256 Identities=22% Similarity=0.252 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhcc---cccchhhHHHHHHHHHHHHH-HH
Q 020761 23 YLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRR---QRLQVSWYWYLLLGFVDVQG-NF 98 (321)
Q Consensus 23 ~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~---~~~~~~~~~~~~~g~~~~~~-~~ 98 (321)
.+.... +.+.+.|+......+...++..++....+.|.....+...+...+++ ++.+++++...+.+.+.... +.
T Consensus 7 ~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (292)
T COG0697 7 LGLLAL-LLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFL 85 (292)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHH
Confidence 333443 33336677766666665555436666667799888887444333322 22222333455556555555 89
Q ss_pred HHHHhhhcchhhHHHHhhcCchHHHHHHHH-HHhhcchhHHHHHHHHHHHHhhhhhccccccccCCCCCcchhhhHHHHH
Q 020761 99 LFNKAFQFTSISSVTLLDCCAIPCAIVFTW-VFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIA 177 (321)
Q Consensus 99 ~~~~al~~~~~~~~~~i~~~~pi~~~ils~-l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~ 177 (321)
+++.++++++++.++++.++.|+++.++++ +++|||++++++.++.+++.|+.++..++..++ .. ...|++++++
T Consensus 86 ~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~---~~-~~~g~~~~l~ 161 (292)
T COG0697 86 LLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGG---IL-SLLGLLLALA 161 (292)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcch---hH-HHHHHHHHHH
Confidence 999999999999999999999999999997 667999999999999999999999998664111 11 5689999999
Q ss_pred HHHHHHHHHHHHHHhhccCChhhHHH-HHHHHHHHHHHHHHHhhccc-ccccccchhhHH-------------------H
Q 020761 178 GAIFFAMSYVGEEFLVKKIDRVEVVC-MIGVYGLLVSVVQLSTLELK-SLESVKWSTDIL-------------------S 236 (321)
Q Consensus 178 aa~~~a~~~v~~k~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~-------------------~ 236 (321)
+++++|++.+..|+.. +.++..... +... +......+....+.. ......|..... .
T Consensus 162 a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~ 239 (292)
T COG0697 162 AALLWALYTALVKRLS-RLGPVTLALLLQLL-LALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLLWYYALRLL 239 (292)
T ss_pred HHHHHHHHHHHHHHhc-CCChHHHHHHHHHH-HHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999987 556666555 4444 222222333332222 111111221111 4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeecc
Q 020761 237 GATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTT 285 (321)
Q Consensus 237 ~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 285 (321)
++...+...+++|+++++++++++||+++..+++|+.+++.|+.+...+
T Consensus 240 ~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 240 GASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 5555555557899999999999999999999999999999999998866
No 14
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.86 E-value=7.5e-23 Score=170.78 Aligned_cols=261 Identities=16% Similarity=0.234 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhccccc---chhhHHHHHHHHHHHHHHHH
Q 020761 23 YLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQRL---QVSWYWYLLLGFVDVQGNFL 99 (321)
Q Consensus 23 ~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~ 99 (321)
+|+++..+. ...-.+.++..+.. +. +|.++.-.|++.-.++-.+...+++... +....++++.|+.|..+.++
T Consensus 38 ~gl~l~~vs-~ff~~~~vv~t~~~--e~-~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvml 113 (346)
T KOG4510|consen 38 LGLLLLTVS-YFFNSCMVVSTKVL--EN-DPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVML 113 (346)
T ss_pred cCceehhhH-HHHhhHHHhhhhhh--cc-ChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHHH
Confidence 455554444 44445556666655 33 7888888887776666666555443221 11223467889999999999
Q ss_pred HHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcccccc-ccCC------CCCcchhhh
Q 020761 100 FNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAE-MAGG------GGSRPLLGD 172 (321)
Q Consensus 100 ~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~-~~~~------~~~~~~~G~ 172 (321)
.|||++|.+.+++.++.++.|.+|.+++|.++|||+++.+.++..+.+.|+++++.+... |+.+ ..+.+..|.
T Consensus 114 myya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt 193 (346)
T KOG4510|consen 114 MYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGT 193 (346)
T ss_pred HHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCch
Confidence 999999999999999999999999999999999999999999999999999999987753 2221 113456789
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHhhcccccccc--cchhhHH------H--------
Q 020761 173 ILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLESV--KWSTDIL------S-------- 236 (321)
Q Consensus 173 ~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~--~~~~~~~------~-------- 236 (321)
..++.++++-|--.++.|++.|+.|....+.|..+.+++...+.....+.-.+|.. +|...+. .
T Consensus 194 ~aai~s~lf~asvyIilR~iGk~~h~~msvsyf~~i~lV~s~I~~~~ig~~~lP~cgkdr~l~~~lGvfgfigQIllTm~ 273 (346)
T KOG4510|consen 194 VAAISSVLFGASVYIILRYIGKNAHAIMSVSYFSLITLVVSLIGCASIGAVQLPHCGKDRWLFVNLGVFGFIGQILLTMG 273 (346)
T ss_pred HHHHHhHhhhhhHHHHHHHhhccccEEEEehHHHHHHHHHHHHHHhhccceecCccccceEEEEEehhhhhHHHHHHHHH
Confidence 99999999999888999999999998888888888888877555554443334432 2221110 1
Q ss_pred ----hHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccCC
Q 020761 237 ----GATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAK 287 (321)
Q Consensus 237 ----~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 287 (321)
-+-..++.-++..+++.+|.+++||+.||++.|.|+++|+.+.+.....+.
T Consensus 274 lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kw 328 (346)
T KOG4510|consen 274 LQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKW 328 (346)
T ss_pred hhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHH
Confidence 111122333468999999999999999999999999999999887765553
No 15
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.85 E-value=3.2e-19 Score=160.14 Aligned_cols=238 Identities=19% Similarity=0.238 Sum_probs=192.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhc--ccccchhhHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHH
Q 020761 52 APITQSVLCYLSLALAYGGILLYR--RQRLQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWV 129 (321)
Q Consensus 52 ~p~~~~~~r~~~~~l~l~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l 129 (321)
.|..+++.++....+...+..... +++.+.+++.+...+++......+.+.|++|+|.+...++.++.|+++++++.+
T Consensus 31 ~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l 110 (303)
T PF08449_consen 31 FPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVL 110 (303)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHH
Confidence 499999999999887766655433 345667888899999999999999999999999999999999999999999999
Q ss_pred HhhcchhHHHHHHHHHHHHhhhhhccccccccCCCCC---cchhhhHHHHHHHHHHHHHHHHHHHhhccC--ChhhHHHH
Q 020761 130 FLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGS---RPLLGDILVIAGAIFFAMSYVGEEFLVKKI--DRVEVVCM 204 (321)
Q Consensus 130 ~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~---~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~--~~~~~~~~ 204 (321)
++|+|++.++++++++..+|+++....|...+...+. ....|+++.+.+.++.|+..+.+||..+++ ++.+.+++
T Consensus 111 ~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy 190 (303)
T PF08449_consen 111 ILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFY 190 (303)
T ss_pred hcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 9999999999999999999999999877532221111 223499999999999999999999998876 57889999
Q ss_pred HHHHHHHHHHHHHHhh-cccccc-------ccc-chhhHH------------------HhHHHHHHHHHHHHHHHHHHHH
Q 020761 205 IGVYGLLVSVVQLSTL-ELKSLE-------SVK-WSTDIL------------------SGATMLILSVLTSDMWAVILRI 257 (321)
Q Consensus 205 ~~~~~~~~~~i~~~~~-~~~~~~-------~~~-~~~~~~------------------~~a~~~~~~~~~~pv~~~~~~~ 257 (321)
...++.++..+..... ..+..+ .+. +..... .++...++...++.++++++|.
T Consensus 191 ~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~ 270 (303)
T PF08449_consen 191 TNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSV 270 (303)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHH
Confidence 9999998885444441 111111 001 111111 7777777778889999999999
Q ss_pred HHhcccchHHHHhHHHHHhhhhheeeccCCCC
Q 020761 258 FCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDL 289 (321)
Q Consensus 258 ~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 289 (321)
+++++++++.+|.|.++++.|..++++.++|+
T Consensus 271 ~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 271 IIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 99999999999999999999999999887765
No 16
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.85 E-value=4.2e-19 Score=155.71 Aligned_cols=219 Identities=15% Similarity=0.032 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhh-cc-c----c---c-chh-hHHHHHHHHH
Q 020761 24 LLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLY-RR-Q----R---L-QVS-WYWYLLLGFV 92 (321)
Q Consensus 24 ~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~-~~-~----~---~-~~~-~~~~~~~g~~ 92 (321)
|.+. .+++.+.|+++....|.. .+. +|.+++++|++++++++.++... ++ + + . +++ +......|.+
T Consensus 3 g~~~-~i~a~~~wg~~~~~~k~~-~~~-~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 3 GIIV-SLLASFLFGYMYYYSKLL-KPL-PATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred cHHH-HHHHHHHHHHHHHHHHHh-ccC-CHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 4444 456666777777777764 456 99999999999998887765432 21 1 1 1 122 2234555666
Q ss_pred HHHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccccccccCCCCCcchhhh
Q 020761 93 DVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGD 172 (321)
Q Consensus 93 ~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~ 172 (321)
....+.++++|++++++++++++.+++|+++++++++++|||++++++++++++++|+.++..++. +. .
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~-------~~----~ 148 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKG-------SL----P 148 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcC-------Cc----h
Confidence 555689999999999999999999999999999999999999999999999999999998865221 11 1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHhh-ccc---cccc-ccchhhHH------------
Q 020761 173 ILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTL-ELK---SLES-VKWSTDIL------------ 235 (321)
Q Consensus 173 ~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~---~~~~-~~~~~~~~------------ 235 (321)
+++++++++||.|.+..||..++ +....... .+....+. .+.... +.. ..+. ..|.....
T Consensus 149 ~~~l~aa~~~a~~~i~~~~~~~~-~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~t~i~~~l~ 225 (256)
T TIGR00688 149 WEALVLAFSFTAYGLIRKALKNT-DLAGFCLE-TLSLMPVA-IYYLLQTDFATVQQTNPFPIWLLLVLAGLITGTPLLAF 225 (256)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCC-CcchHHHH-HHHHHHHH-HHHHHHhccCcccccCchhHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999997543 33322221 11222222 111111 111 1111 13433222
Q ss_pred ------HhHHHHHHHHHHHHHHHHHHHHHH
Q 020761 236 ------SGATMLILSVLTSDMWAVILRIFC 259 (321)
Q Consensus 236 ------~~a~~~~~~~~~~pv~~~~~~~~~ 259 (321)
.++...+...+++|+++++++.++
T Consensus 226 ~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 226 VIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 777788888889999999998764
No 17
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.81 E-value=2.4e-18 Score=150.62 Aligned_cols=274 Identities=20% Similarity=0.255 Sum_probs=199.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHHHHh-------h--hc--c--------
Q 020761 17 MALRTLYLLLLGQLVSFSLALSSFTTAVITDL-GVDAPITQSVLCYLSLALAYGGIL-------L--YR--R-------- 76 (321)
Q Consensus 17 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~-~~~~p~~~~~~r~~~~~l~l~~~~-------~--~~--~-------- 76 (321)
+.+++..|+.+..++..+|.+++.....+..+ .+..|+..++..-..-.+.+.++. . .| +
T Consensus 8 ~~~r~~lGl~lL~~V~viWV~SSeLT~~if~~~~f~kPFfiTY~~ts~fivYL~~~~~~d~~~~~~~~R~~~~~~~~~~e 87 (416)
T KOG2765|consen 8 KRWRWTLGLVLLLLVVVIWVASSELTQSIFEDYNFRKPFFITYLKTSLFIVYLPPFILIDAPWRILETRSKRSNHAIMEE 87 (416)
T ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHHHHhhcccCCceeEeeecccceehhhhhhhhhcchhhhhhhhccccchhhhhh
Confidence 44556788888888888999999888877654 455799988766433333333211 0 11 0
Q ss_pred ----------------------------------c-------------------ccc------------hhhHHHHHHHH
Q 020761 77 ----------------------------------Q-------------------RLQ------------VSWYWYLLLGF 91 (321)
Q Consensus 77 ----------------------------------~-------------------~~~------------~~~~~~~~~g~ 91 (321)
. +.| +--+.-+....
T Consensus 88 ~d~e~y~~~~~~~~~~~~~l~~~~~~~~~~~~l~s~~~~~~~s~~~e~~~~~~~~~rs~l~~~~~~t~~~~ak~sl~fc~ 167 (416)
T KOG2765|consen 88 ADAEGYFSACTTDKTMESGLSGPESVPDKSPLLGSGEEEKPESTNLEVREKANTKKRSNLKERGKLTATQTAKLSLFFCP 167 (416)
T ss_pred hhhhccccccccccccccccCCceeeeccccccccccccCCCCccccccccCCcccccchhhhhhhHHHHHHHHHHHHHH
Confidence 0 001 01123355666
Q ss_pred HHHHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccccccc-cCCCCCcchh
Q 020761 92 VDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEM-AGGGGSRPLL 170 (321)
Q Consensus 92 ~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~-~~~~~~~~~~ 170 (321)
+...+++.++.|+.|++++..+++.++.-+||.+++.++.+||+++.+.+++.+++.|+++++-+|... +....+....
T Consensus 168 lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~ll 247 (416)
T KOG2765|consen 168 LWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLL 247 (416)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhH
Confidence 788889999999999999999999999999999999999999999999999999999999999887542 2234456689
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccC-Chhh---HHHHHHHHHHHHHHHHHH-----hhccccccccc------------
Q 020761 171 GDILVIAGAIFFAMSYVGEEFLVKKI-DRVE---VVCMIGVYGLLVSVVQLS-----TLELKSLESVK------------ 229 (321)
Q Consensus 171 G~~l~l~aa~~~a~~~v~~k~~~~~~-~~~~---~~~~~~~~~~~~~~i~~~-----~~~~~~~~~~~------------ 229 (321)
|+++++++|+.||+|.++.||-.++. +... +.++..++..+++..+.. ..|..+.|...
T Consensus 248 G~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~lig 327 (416)
T KOG2765|consen 248 GNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNLIG 327 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhHHH
Confidence 99999999999999999999987776 3433 344444444444421221 22333333211
Q ss_pred -------chhhHH-HhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccCCCCC
Q 020761 230 -------WSTDIL-SGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDLL 290 (321)
Q Consensus 230 -------~~~~~~-~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~ 290 (321)
|.+..+ .++....+.+.++.+++++.+..+-+..+++.+++|...|++|.+..++..+...
T Consensus 328 tvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~~ 396 (416)
T KOG2765|consen 328 TVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENSK 396 (416)
T ss_pred HHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccccc
Confidence 221111 7777777777788999999999999999999999999999999999998765433
No 18
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.80 E-value=9.6e-17 Score=133.58 Aligned_cols=240 Identities=15% Similarity=0.059 Sum_probs=181.8
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhc-ccccchhhHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHh
Q 020761 37 LSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYR-RQRLQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLL 115 (321)
Q Consensus 37 ~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i 115 (321)
..+-+++.+. ..+ .|...+.+|..++++++.+++..+ +|..+++|+..+..|......|.+||.+++.+|.+.+..+
T Consensus 26 ~Gas~Ak~LF-P~v-G~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAi 103 (292)
T COG5006 26 SGASFAKSLF-PLV-GAAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAI 103 (292)
T ss_pred hhHHHHHHHc-ccc-ChhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhh
Confidence 3333444443 345 788999999999999998877643 4556778888999999988889999999999999999999
Q ss_pred hcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccccccccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 020761 116 DCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVKK 195 (321)
Q Consensus 116 ~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~ 195 (321)
-++-|+.+..++ .+|.. ..+-+.+++.|+.++.-.+. +..+.+..|..+++.++.||+.|.+..||..+.
T Consensus 104 EF~GPL~vA~~~----sRr~~--d~vwvaLAvlGi~lL~p~~~----~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~ 173 (292)
T COG5006 104 EFTGPLAVALLS----SRRLR--DFVWVALAVLGIWLLLPLGQ----SVWSLDPVGVALALGAGACWALYIVLGQRAGRA 173 (292)
T ss_pred hhccHHHHHHHh----ccchh--hHHHHHHHHHHHHhheeccC----CcCcCCHHHHHHHHHHhHHHHHHHHHcchhccc
Confidence 999999888766 44444 34445667888888765332 234566789999999999999999999999876
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHhhccc-ccccccchhhH-----H---------------HhHHHHHHHHHHHHHHHHH
Q 020761 196 IDRVEVVCMIGVYGLLVSVVQLSTLELK-SLESVKWSTDI-----L---------------SGATMLILSVLTSDMWAVI 254 (321)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~-----~---------------~~a~~~~~~~~~~pv~~~~ 254 (321)
.|..+.+..-+.+++++. +|+...+.. .+....-.... + .+....++.+.++|.++.+
T Consensus 174 ~~g~~g~a~gm~vAaviv-~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl 252 (292)
T COG5006 174 EHGTAGVAVGMLVAALIV-LPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAAL 252 (292)
T ss_pred CCCchHHHHHHHHHHHHH-hhhhhhhcchhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHH
Confidence 677788888888888888 776543321 11110000000 0 5566666777789999999
Q ss_pred HHHHHhcccchHHHHhHHHHHhhhhheeeccCCCC
Q 020761 255 LRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDL 289 (321)
Q Consensus 255 ~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 289 (321)
.+++++||.+|+.||+|+..|+.++.-.+...+|+
T Consensus 253 ~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~~ 287 (292)
T COG5006 253 SGLIFLGETLTLIQWLAIAAVIAASAGSTLTARKP 287 (292)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhccccccCCC
Confidence 99999999999999999999999887666555544
No 19
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.79 E-value=2.7e-17 Score=146.47 Aligned_cols=248 Identities=13% Similarity=0.041 Sum_probs=170.3
Q ss_pred HHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhcccc---cchhhHHHHHHHHHHHHHHHHHHHhhh
Q 020761 29 QLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQR---LQVSWYWYLLLGFVDVQGNFLFNKAFQ 105 (321)
Q Consensus 29 ~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~al~ 105 (321)
.+++.+.||+.....|... ++ ++.... |..++.+++..+....+++ .++-+..-++.|.....++.+++.+.+
T Consensus 6 ~lia~~~wGs~g~~~k~~~-g~-~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~~ai~ 81 (290)
T TIGR00776 6 ALIPALFWGSFVLINVKIG-GG-PYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQFKSMR 81 (290)
T ss_pred HHHHHHHHhhhHHHHhccC-CC-HHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 4566677777555555443 66 554443 6767766665543322221 122333344455556666999999999
Q ss_pred cchhhHHHHhhc-CchHHHHHHHHHHhhcchhHHH----HHHHHHHHHhhhhhccccccccCCCC--CcchhhhHHHHHH
Q 020761 106 FTSISSVTLLDC-CAIPCAIVFTWVFLGTRYSVWQ----LFGASLCVLGLGLMLLSDAEMAGGGG--SRPLLGDILVIAG 178 (321)
Q Consensus 106 ~~~~~~~~~i~~-~~pi~~~ils~l~l~er~~~~~----~~~~~l~~~Gv~l~~~~~~~~~~~~~--~~~~~G~~l~l~a 178 (321)
+++++.+.++.+ +.++++.+++.+++|||.++++ ++|++++++|+.++...+.. +.+++ .+...|+.+++++
T Consensus 82 ~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~-~~~~~~~~~~~~Gi~~~l~s 160 (290)
T TIGR00776 82 YMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDK-SAGIKSEFNFKKGILLLLMS 160 (290)
T ss_pred HHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccc-ccccccccchhhHHHHHHHH
Confidence 999999999988 8899999999999999999999 99999999999998775431 11111 2336899999999
Q ss_pred HHHHHHHHHHHHHhhccCChhhHHHHHHH---HHHHHHHHHHHhhcccccccccchhhHH------------------Hh
Q 020761 179 AIFFAMSYVGEEFLVKKIDRVEVVCMIGV---YGLLVSVVQLSTLELKSLESVKWSTDIL------------------SG 237 (321)
Q Consensus 179 a~~~a~~~v~~k~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~------------------~~ 237 (321)
+++|+.|.+..|+. ++||...++.+.. .+..+...+.. ...+..+...|..... .+
T Consensus 161 g~~y~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Gi~~~ia~~~y~~~~~~~~~ 237 (290)
T TIGR00776 161 TIGYLVYVVVAKAF--GVDGLSVLLPQAIGMVIGGIIFNLGHI-LAKPLKKYAILLNILPGLMWGIGNFFYLFSAQPKVG 237 (290)
T ss_pred HHHHHHHHHHHHHc--CCCcceehhHHHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Confidence 99999999999986 4788877544443 33333323331 0111111111111000 44
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHH----hHHHHHhhhhheeec
Q 020761 238 ATMLILSVLTSDMWAVILRIFCYHQQVNWTYY----LAFAAVLIGLIIYST 284 (321)
Q Consensus 238 a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~----~G~~li~~g~~l~~~ 284 (321)
+...+.....+|+.+.+++++++||+.+..++ +|+++++.|+.+...
T Consensus 238 ~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 238 VATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 55566667789999999999999999999999 999999999887643
No 20
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.73 E-value=4e-18 Score=150.43 Aligned_cols=236 Identities=17% Similarity=0.271 Sum_probs=189.7
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhcc---cc--cchhhHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHhhcCchHHH
Q 020761 49 GVDAPITQSVLCYLSLALAYGGILLYRR---QR--LQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCA 123 (321)
Q Consensus 49 ~~~~p~~~~~~r~~~~~l~l~~~~~~~~---~~--~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~ 123 (321)
++..|..++..+...+.+.+......+- ++ .+..++..+.+|+....+..+-+.++.|.|++.++++..++|+++
T Consensus 44 ~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~t 123 (316)
T KOG1441|consen 44 GFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFT 123 (316)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHHHHHHhhcchhH
Confidence 7878999999977777776665544331 12 345788888999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHhhhhhccccccccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhcc----CChh
Q 020761 124 IVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVKK----IDRV 199 (321)
Q Consensus 124 ~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~----~~~~ 199 (321)
.++++++.+|+++...+.+++....|+.+.++.|. +.++.|.+.++.+.+..++.+++.|+..++ .|+.
T Consensus 124 vl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~-------~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~ 196 (316)
T KOG1441|consen 124 VLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTEL-------SFNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSM 196 (316)
T ss_pred HHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccc-------cccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCch
Confidence 99999999999999999999999999999988443 467799999999999999999999999842 4889
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccc-cc---ccccchhhHH----------------------HhHHHHHHHHHHHHHHHH
Q 020761 200 EVVCMIGVYGLLVSVVQLSTLELK-SL---ESVKWSTDIL----------------------SGATMLILSVLTSDMWAV 253 (321)
Q Consensus 200 ~~~~~~~~~~~~~~~i~~~~~~~~-~~---~~~~~~~~~~----------------------~~a~~~~~~~~~~pv~~~ 253 (321)
+...++..++++++++|+...+.. .. ....|..... +++...++...+.-++.+
T Consensus 197 ~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi 276 (316)
T KOG1441|consen 197 NLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVI 276 (316)
T ss_pred HHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEE
Confidence 999999999999995487654332 22 1112322211 445555554555566678
Q ss_pred HHHHHHhcccchHHHHhHHHHHhhhhheeeccCCCCCC
Q 020761 254 ILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDLLP 291 (321)
Q Consensus 254 ~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~ 291 (321)
+.|+.+|+++.++.+..|.++.+.|+++|++.+.++++
T Consensus 277 ~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~ 314 (316)
T KOG1441|consen 277 VVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEKK 314 (316)
T ss_pred EeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhhc
Confidence 88999999999999999999999999999988776543
No 21
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.71 E-value=3.4e-15 Score=127.60 Aligned_cols=249 Identities=16% Similarity=0.113 Sum_probs=175.7
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhh--hcccc----cchh-hHHHHHHHHHHH
Q 020761 22 LYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILL--YRRQR----LQVS-WYWYLLLGFVDV 94 (321)
Q Consensus 22 ~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~--~~~~~----~~~~-~~~~~~~g~~~~ 94 (321)
.+|++++ +.+-+.||....-.|+.. .. ++.++...|.+-+...++.+.. ++++. .+++ ......++....
T Consensus 6 ~~Gil~~-l~Ay~lwG~lp~y~kll~-~~-~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li 82 (293)
T COG2962 6 RKGILLA-LLAYLLWGLLPLYFKLLE-PL-PATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLI 82 (293)
T ss_pred cchhHHH-HHHHHHHHHHHHHHHHHc-cC-CHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 4666776 566677777665556553 55 8899999998887777665543 22221 1112 122333344444
Q ss_pred HH-HHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccccccccCCCCCcchhhhH
Q 020761 95 QG-NFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDI 173 (321)
Q Consensus 95 ~~-~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~ 173 (321)
.. ...|.+|.....+-++++-++..|++.++++.+++|||+++.|+++++++.+||...+.... +.+ +
T Consensus 83 ~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g-------~lp----w 151 (293)
T COG2962 83 GLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG-------SLP----W 151 (293)
T ss_pred HHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC-------CCc----H
Confidence 55 55677899999999999999999999999999999999999999999999999999888322 233 3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHhhcccc--c---ccccchhhHH-------------
Q 020761 174 LVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKS--L---ESVKWSTDIL------------- 235 (321)
Q Consensus 174 l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~---~~~~~~~~~~------------- 235 (321)
.++.=++.|+.|..+-|+. +.|+.+........-.+...+.....+.+. . +...|...+.
T Consensus 152 val~la~sf~~Ygl~RK~~--~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~~~~LLv~aG~vTavpL~lf~ 229 (293)
T COG2962 152 VALALALSFGLYGLLRKKL--KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANSLWLLLVLAGLVTAVPLLLFA 229 (293)
T ss_pred HHHHHHHHHHHHHHHHHhc--CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCchHHHHHHHhhHHHHHHHHHHH
Confidence 4466678899999887765 357777777777666666634333333322 1 1112222221
Q ss_pred -----HhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccC
Q 020761 236 -----SGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTA 286 (321)
Q Consensus 236 -----~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 286 (321)
..-....+..+.+|..-.+++++++||+++..+....++|..|+.++....
T Consensus 230 ~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~ 285 (293)
T COG2962 230 AAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDG 285 (293)
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333444566678999999999999999999999999999999999988654
No 22
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.68 E-value=2.8e-13 Score=119.12 Aligned_cols=207 Identities=14% Similarity=0.133 Sum_probs=156.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcccccccc-
Q 020761 83 WYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMA- 161 (321)
Q Consensus 83 ~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~~- 161 (321)
..+..+.+++...-|.++|.++.+.++++.++..++..+.|+++++++++||++++||.++++.++|+.++-.+...+.
T Consensus 92 ~lk~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~ 171 (345)
T KOG2234|consen 92 TLKVSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTG 171 (345)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 3456666777766677999999999999999999999999999999999999999999999999999999984333211
Q ss_pred ---CCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCC--hhhHHHHHHHHHHHHHHHHHHhhcccccc------ccc-
Q 020761 162 ---GGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVKKID--RVEVVCMIGVYGLLVSVVQLSTLELKSLE------SVK- 229 (321)
Q Consensus 162 ---~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~~~- 229 (321)
.....+.+.|....+.+++..++..++.+|..|+.+ ....+....++|.++.++.....+.+... ..+
T Consensus 172 a~~~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~ 251 (345)
T KOG2234|consen 172 AKSESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSS 251 (345)
T ss_pred ccCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccH
Confidence 123456789999999999999999999999998753 44455666677777774444433332221 111
Q ss_pred chhhHH----------------HhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccCCCC
Q 020761 230 WSTDIL----------------SGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDL 289 (321)
Q Consensus 230 ~~~~~~----------------~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 289 (321)
+.|.+. .+-..-........+++.+.++.+++-+||....+|..+++.++.+|...+.++
T Consensus 252 ~vw~vVl~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 252 IVWLVVLLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred HHHHHHHHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 111111 333333344446788999999999999999999999999999999999555543
No 23
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.65 E-value=3e-14 Score=120.35 Aligned_cols=248 Identities=23% Similarity=0.287 Sum_probs=184.0
Q ss_pred hHHHHHHHHHhc-------CCChhHHHHHHHHHHHHHHHHHHhhhcccc---------------c--chhhHHHHHHHHH
Q 020761 37 LSSFTTAVITDL-------GVDAPITQSVLCYLSLALAYGGILLYRRQR---------------L--QVSWYWYLLLGFV 92 (321)
Q Consensus 37 ~~~~~~~~l~~~-------~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~---------------~--~~~~~~~~~~g~~ 92 (321)
..|+...|.++. ++..|+.++...++.-.++++.+...|.+. . +.+...++..+++
T Consensus 16 s~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p~lfl~Pal~ 95 (372)
T KOG3912|consen 16 SFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNPVLFLPPALC 95 (372)
T ss_pred cHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCcceecChHHH
Confidence 337777887643 477899999999998888887766543211 1 1123445667889
Q ss_pred HHHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccccccccCC---CCCcch
Q 020761 93 DVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGG---GGSRPL 169 (321)
Q Consensus 93 ~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~---~~~~~~ 169 (321)
+..+..++|.++.+++++..+++.....+|+.+++..+++++++.+||+|+.....|++++...|.+.+.. +.++..
T Consensus 96 Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~p~~d~s~ii 175 (372)
T KOG3912|consen 96 DIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTDPYTDYSSII 175 (372)
T ss_pred HHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccCCccccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999887653322 235567
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccC--ChhhHHHHHHHHHHHHHHH---HHHhhccc-cccc------ccchhhHH--
Q 020761 170 LGDILVIAGAIFFAMSYVGEEFLVKKI--DRVEVVCMIGVYGLLVSVV---QLSTLELK-SLES------VKWSTDIL-- 235 (321)
Q Consensus 170 ~G~~l~l~aa~~~a~~~v~~k~~~~~~--~~~~~~~~~~~~~~~~~~i---~~~~~~~~-~~~~------~~~~~~~~-- 235 (321)
.|+++.+.+-+.-|+..+.-+|..+++ +|.+.++|..++|..+..+ |....... .+.. .+|.....
T Consensus 176 tGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~eD~~~~~~~~ 255 (372)
T KOG3912|consen 176 TGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLEDWGDAFAAL 255 (372)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchhhHHHHHHHh
Confidence 999999999999999999999998876 6999999999999655422 22221111 1110 01111000
Q ss_pred ------------------------------HhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeec
Q 020761 236 ------------------------------SGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYST 284 (321)
Q Consensus 236 ------------------------------~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 284 (321)
.++..-.+.=.....+-=+++.....|.++..|+.|.++.+.|+++|+-
T Consensus 256 ~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY~~ 334 (372)
T KOG3912|consen 256 QESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILYNQ 334 (372)
T ss_pred cCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222222244555566777888999999999999999999999874
No 24
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.64 E-value=3.2e-14 Score=122.98 Aligned_cols=197 Identities=19% Similarity=0.207 Sum_probs=151.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccccc
Q 020761 79 LQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDA 158 (321)
Q Consensus 79 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~ 158 (321)
.+++..++.+.+++....|.+.+.++++.+++..+++.++..++|++++++++|+|++.+||.++.+.+.|+.++-..+.
T Consensus 13 ~~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~ 92 (244)
T PF04142_consen 13 SPKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSS 92 (244)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCc
Confidence 34456678899999999999999999999999999999999999999999999999999999999999999999877654
Q ss_pred ccc---CCC-------CCcchhhhHHHHHHHHHHHHHHHHHHHhhccC--ChhhHHHHHHHHHHHHHHHHHHhhcccccc
Q 020761 159 EMA---GGG-------GSRPLLGDILVIAGAIFFAMSYVGEEFLVKKI--DRVEVVCMIGVYGLLVSVVQLSTLELKSLE 226 (321)
Q Consensus 159 ~~~---~~~-------~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 226 (321)
... .+. ..+...|.+..++++++.|+..++.||..|+. +......+..++|.++..+.....+.....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~ 172 (244)
T PF04142_consen 93 QSSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAIS 172 (244)
T ss_pred cccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 321 111 22456999999999999999999999999987 445566777777877774443333222211
Q ss_pred ------ccc-chhhHH----------------HhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHH
Q 020761 227 ------SVK-WSTDIL----------------SGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAV 275 (321)
Q Consensus 227 ------~~~-~~~~~~----------------~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li 275 (321)
..+ |.+..+ .+...-+.....+.+++.+.++.+|+.+++....+|..++
T Consensus 173 ~~g~f~G~~~~~~~~i~~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~~V 244 (244)
T PF04142_consen 173 ESGFFHGYSWWVWIVIFLQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAALV 244 (244)
T ss_pred cCCchhhcchHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhheecC
Confidence 111 122111 4444444555578999999999999999999999997653
No 25
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.63 E-value=6.9e-14 Score=119.70 Aligned_cols=231 Identities=15% Similarity=0.211 Sum_probs=170.7
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhh-hc-cc---ccchhhHHHH----HHHHHHHHHHHHHHHhhhcchhhHHHHhhcC
Q 020761 48 LGVDAPITQSVLCYLSLALAYGGILL-YR-RQ---RLQVSWYWYL----LLGFVDVQGNFLFNKAFQFTSISSVTLLDCC 118 (321)
Q Consensus 48 ~~~~~p~~~~~~r~~~~~l~l~~~~~-~~-~~---~~~~~~~~~~----~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~ 118 (321)
+++.-|+.++.+++++-.+.-..... ++ +. +.+.+|..++ ..|++....-.+-+++++|++.+.+++..++
T Consensus 40 ~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSS 119 (349)
T KOG1443|consen 40 KNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSS 119 (349)
T ss_pred cCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeecccc
Confidence 45767999999988776555443322 22 11 2233555444 4444444446788999999999999999999
Q ss_pred chHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccccccccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccC--
Q 020761 119 AIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVKKI-- 196 (321)
Q Consensus 119 ~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~-- 196 (321)
.++|+.+++.+|-=||+++.-...+.+..+|+.+.++.+. +.+..|..+..++.++.|+...+.++..++.
T Consensus 120 si~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsT-------qf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~ 192 (349)
T KOG1443|consen 120 SILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKST-------QFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPS 192 (349)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEeccc-------ceeehhHHHHHHHHHhhhhhHHHHHHHHhcCcc
Confidence 9999999999988899999999999999999999998443 3567899999999999999998888887776
Q ss_pred ---ChhhHHHHHHHHHHHHHHHHHHhhccccccc---------c--c-chhhHH--------------------HhHHHH
Q 020761 197 ---DRVEVVCMIGVYGLLVSVVQLSTLELKSLES---------V--K-WSTDIL--------------------SGATML 241 (321)
Q Consensus 197 ---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~---------~--~-~~~~~~--------------------~~a~~~ 241 (321)
+|............+.++...+.+|+..... . . +....+ ++....
T Consensus 193 ~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltl 272 (349)
T KOG1443|consen 193 AKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTL 272 (349)
T ss_pred ccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccceee
Confidence 4677777766666666634455566532210 0 0 110000 555555
Q ss_pred HHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeecc
Q 020761 242 ILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTT 285 (321)
Q Consensus 242 ~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 285 (321)
++.+...-+-+.+++..+.+|.++...|+|..+...|+.++...
T Consensus 273 SIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~~~~ 316 (349)
T KOG1443|consen 273 SIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLHRNE 316 (349)
T ss_pred eHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHhccC
Confidence 56666677888999999999999999999999999999999443
No 26
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.60 E-value=4.5e-13 Score=114.82 Aligned_cols=240 Identities=16% Similarity=0.235 Sum_probs=193.5
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhc--ccccchhhHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHhhcCchHHHHHH
Q 020761 49 GVDAPITQSVLCYLSLALAYGGILLYR--RQRLQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVF 126 (321)
Q Consensus 49 ~~~~p~~~~~~r~~~~~l~l~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~il 126 (321)
.+.+|..+.+.+.+.+.+.-..++-.+ +...+.+|+.+...++.+.....|.+.|++|++-.+..+-.+...+-+++.
T Consensus 47 rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlm 126 (327)
T KOG1581|consen 47 RFEHSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLM 126 (327)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHH
Confidence 367888889888888777654433322 233466889999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchhHHHHHHHHHHHHhhhhhccccccccC--CCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccC--ChhhHH
Q 020761 127 TWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAG--GGGSRPLLGDILVIAGAIFFAMSYVGEEFLVKKI--DRVEVV 202 (321)
Q Consensus 127 s~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~~~--~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~--~~~~~~ 202 (321)
..++.|+|++.++.+...+...|+.+....+..++. +...+...|..+....-++-+..+..+.++.++. ++..++
T Consensus 127 g~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM 206 (327)
T KOG1581|consen 127 GTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMM 206 (327)
T ss_pred HHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHH
Confidence 999999999999999999999999999887543211 2334677999999999999999999999998876 688999
Q ss_pred HHHHHHHHHHHHHHHHhhccccccc---------ccchhhHH-----------------HhHHHHHHHHHHHHHHHHHHH
Q 020761 203 CMIGVYGLLVSVVQLSTLELKSLES---------VKWSTDIL-----------------SGATMLILSVLTSDMWAVILR 256 (321)
Q Consensus 203 ~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~~~~~-----------------~~a~~~~~~~~~~pv~~~~~~ 256 (321)
++.++++++..... .+.+....+. ..|..... .|+.....+..++-++++.++
T Consensus 207 ~~vNLf~~i~~~~~-li~qg~~~~av~F~~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS 285 (327)
T KOG1581|consen 207 FGVNLFSAILNGTY-LILQGHLLPAVSFIKEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLS 285 (327)
T ss_pred HHHHHHHHHHHHHh-hhcCCCCchHHHHHHcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHH
Confidence 99999999988443 3333322221 11111111 778888888889999999999
Q ss_pred HHHhcccchHHHHhHHHHHhhhhheeeccCCCC
Q 020761 257 IFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDL 289 (321)
Q Consensus 257 ~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 289 (321)
.+.+|.++++.||.|..+++.|+.+-.+.++++
T Consensus 286 ~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~~ 318 (327)
T KOG1581|consen 286 CIVFGHPLSSEQWLGVLIVFGGIFLEILLKKKK 318 (327)
T ss_pred HHHhCCccchhhccCeeeehHHHHHHHHHHHhc
Confidence 999999999999999999999998877766653
No 27
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.57 E-value=4e-14 Score=116.71 Aligned_cols=235 Identities=11% Similarity=0.152 Sum_probs=173.3
Q ss_pred hHHHHHHHHHHHHHHHHHHhh-hc-ccccchhhHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHH
Q 020761 53 PITQSVLCYLSLALAYGGILL-YR-RQRLQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVF 130 (321)
Q Consensus 53 p~~~~~~r~~~~~l~l~~~~~-~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~ 130 (321)
...+++++...-.+.-=.++. ++ .+.++.+-+.|...++....++...+.|+||+|-.+..+-.+..|+-++++++++
T Consensus 53 alaLVf~qC~~N~vfAkvl~~ir~~~~~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~ 132 (337)
T KOG1580|consen 53 ALALVFFQCTANTVFAKVLFLIRKKTEIDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLF 132 (337)
T ss_pred HHHHHHHHHHHHHHHHHhheeecccccccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhh
Confidence 344555554444333222222 22 3445556667888888888889999999999999999999999999999999999
Q ss_pred hhcchhHHHHHHHHHHHHhhhhhccccccccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccC--ChhhHHHHHHHH
Q 020761 131 LGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVKKI--DRVEVVCMIGVY 208 (321)
Q Consensus 131 l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~--~~~~~~~~~~~~ 208 (321)
.+++.+|++..+++++++|+++..+.+....+.++.....|.++.+++-.+-++....+.|+.+.+ +...++.+.+++
T Consensus 133 ~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~Nlw 212 (337)
T KOG1580|consen 133 AHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLW 212 (337)
T ss_pred hcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHH
Confidence 999999999999999999999999976433344555667999999999999999999999987766 456788899999
Q ss_pred HHHHHHHHHHhhccccc---------ccccchhhHH-----------------HhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020761 209 GLLVSVVQLSTLELKSL---------ESVKWSTDIL-----------------SGATMLILSVLTSDMWAVILRIFCYHQ 262 (321)
Q Consensus 209 ~~~~~~i~~~~~~~~~~---------~~~~~~~~~~-----------------~~a~~~~~~~~~~pv~~~~~~~~~~~e 262 (321)
+.+.+.....+ .++.+ |..-|....+ .++..-++...+.-.++++.|+++++.
T Consensus 213 StL~Lg~g~lf-TGElweF~yF~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~n 291 (337)
T KOG1580|consen 213 STLYLGAGLLF-TGELWEFFYFVQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNN 291 (337)
T ss_pred HHHHhhhhhee-hhhHHHHHHHHHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcC
Confidence 98888544332 22111 1111221111 333333333447789999999999999
Q ss_pred cchHHHHhHHHHHhhhhheeeccCCC
Q 020761 263 QVNWTYYLAFAAVLIGLIIYSTTAKD 288 (321)
Q Consensus 263 ~~~~~~~~G~~li~~g~~l~~~~~~~ 288 (321)
+++..||+|..+++.+...-....++
T Consensus 292 pls~rQwlgtvlVF~aL~~D~~~GK~ 317 (337)
T KOG1580|consen 292 PLSGRQWLGTVLVFSALTADVVDGKK 317 (337)
T ss_pred cCcHHHHHHHHHHHHHhhhHhhcCCc
Confidence 99999999999999998776654443
No 28
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.51 E-value=2.1e-13 Score=102.00 Aligned_cols=127 Identities=25% Similarity=0.256 Sum_probs=106.8
Q ss_pred HHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhccc------ccchhhHHHHHHHHHHHHHHHHHH
Q 020761 28 GQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQ------RLQVSWYWYLLLGFVDVQGNFLFN 101 (321)
Q Consensus 28 ~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~~~~ 101 (321)
..+++..+++...+..|+..++. +|...+..|-....+.++.+.....+ ..++.|....+.|..+..+.++||
T Consensus 7 ~ALLsA~fa~L~~iF~KIGl~~v-dp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl~Yf 85 (140)
T COG2510 7 YALLSALFAGLTPIFAKIGLEGV-DPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWLLYF 85 (140)
T ss_pred HHHHHHHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHHHHH
Confidence 34566677788788888988888 99999999998888777776654321 245667666666766667799999
Q ss_pred HhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcc
Q 020761 102 KAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLL 155 (321)
Q Consensus 102 ~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~ 155 (321)
.|++...++.+.++..++|+++++++++++|||++.++|+|+++..+|++++..
T Consensus 86 ~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 86 RALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 999999999999999999999999999999999999999999999999988754
No 29
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.50 E-value=6.6e-13 Score=111.81 Aligned_cols=267 Identities=16% Similarity=0.165 Sum_probs=195.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHHH--HhcCCC-hhHHHHHHHHHHHHHHHHHHhh-hcccccchhhHHHHHHHHH
Q 020761 17 MALRTLYLLLLGQLVSFSLALSSFTTAVI--TDLGVD-APITQSVLCYLSLALAYGGILL-YRRQRLQVSWYWYLLLGFV 92 (321)
Q Consensus 17 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~l--~~~~~~-~p~~~~~~r~~~~~l~l~~~~~-~~~~~~~~~~~~~~~~g~~ 92 (321)
.++++|.-.+++....+......-....+ ..+++. ..+.+++.+++....+-+.... .+.++...+|+.|..++++
T Consensus 36 s~kpkw~QFlic~~g~Ff~Yl~yGy~qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~r~iP~rtY~~la~~ 115 (367)
T KOG1582|consen 36 SDKPKWTQFLICSAGVFFLYLVYGYLQELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKRRVIPWRTYVILAFL 115 (367)
T ss_pred ccCchhhhHHHHHhHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHhhhheEEEeecccceecchhHhhhhHhh
Confidence 34455555444433333333332222211 234662 2456777777776544333222 3344556689999999999
Q ss_pred HHHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccccccccCCCCCcchhhh
Q 020761 93 DVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGD 172 (321)
Q Consensus 93 ~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~ 172 (321)
..+.+.+.+.++.|.+-....+..++.-+-+++.+.++-+.|..+....+..+..+|.++.+..|.+ ...+.+..|.
T Consensus 116 t~gtmGLsn~SlgYLNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~---~sPNF~~~Gv 192 (367)
T KOG1582|consen 116 TVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQ---TSPNFNLIGV 192 (367)
T ss_pred hhhccccCcCccccccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccc---cCCCcceeeH
Confidence 8888999999999999999999999999999999999999999999999999999999999998862 2345667899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccC--ChhhHHHHHHHHHHHHHHHHHHhhcccccc------cccc-hhhH--H------
Q 020761 173 ILVIAGAIFFAMSYVGEEFLVKKI--DRVEVVCMIGVYGLLVSVVQLSTLELKSLE------SVKW-STDI--L------ 235 (321)
Q Consensus 173 ~l~l~aa~~~a~~~v~~k~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------~~~~-~~~~--~------ 235 (321)
.+.-.+-++-|.--.++++.++.. +..+++++...+|.+....|....+ +-++ ..+| .... +
T Consensus 193 ~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTg-e~f~a~~fcaehp~~tyGy~~~~s~~gy 271 (367)
T KOG1582|consen 193 MMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTG-ELFSAWTFCAEHPVRTYGYAFLFSLAGY 271 (367)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcc-cchhhhHHHHhCcHhHHHHHHHHHHHhH
Confidence 999999999999888999998876 4578899999999988866654332 2111 1122 1111 1
Q ss_pred ------------HhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccCC
Q 020761 236 ------------SGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAK 287 (321)
Q Consensus 236 ------------~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 287 (321)
.|+..+.......-.+++++|+++|..|+|.+..-|..+|+.|+++-.+++.
T Consensus 272 lG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 272 LGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred hhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 5566666666668889999999999999999999999999999999888773
No 30
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.35 E-value=4.9e-12 Score=98.03 Aligned_cols=118 Identities=24% Similarity=0.388 Sum_probs=94.6
Q ss_pred HHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhh--cc---cccchhhHHHHHHHHHH-HHHHHHHHHhhhcch
Q 020761 35 LALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLY--RR---QRLQVSWYWYLLLGFVD-VQGNFLFNKAFQFTS 108 (321)
Q Consensus 35 ~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~--~~---~~~~~~~~~~~~~g~~~-~~~~~~~~~al~~~~ 108 (321)
.|+......|...++. +|....++|+..+.+ +.++... ++ +..++++......+.+. ...+.++++++++.+
T Consensus 2 ~~a~~~~~~k~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 79 (126)
T PF00892_consen 2 SWAIYSVFSKKLLKKI-SPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYIS 79 (126)
T ss_pred eeeeHHHHHHHHhccC-CHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcc
Confidence 4566555666655566 999999999999986 4443332 22 22344566677777774 555999999999999
Q ss_pred hhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhc
Q 020761 109 ISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLML 154 (321)
Q Consensus 109 ~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~ 154 (321)
++.++++.++.|+++.+++++++|||+++++++|++++++|+.++.
T Consensus 80 ~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 80 ASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999875
No 31
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=2e-10 Score=99.93 Aligned_cols=245 Identities=14% Similarity=0.060 Sum_probs=174.0
Q ss_pred HHHHHHHhc--CCChhHHHHHHHHHHHHHHHHHHhhhc----ccccchhhHHHHHHHHHHHHHHHHHHHhhhcchhhHHH
Q 020761 40 FTTAVITDL--GVDAPITQSVLCYLSLALAYGGILLYR----RQRLQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVT 113 (321)
Q Consensus 40 ~~~~~l~~~--~~~~p~~~~~~r~~~~~l~l~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~ 113 (321)
.+.-|.... ++...+.....+.+.+.+.+...-..+ ++-.++..++.+...++..+..+.-..+++|.++...+
T Consensus 28 ~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~t~~~slk~lnVpm~t 107 (314)
T KOG1444|consen 28 TVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLFTGSKSLKYLNVPMFT 107 (314)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHHHccccccccCchHHH
Confidence 334454443 443334444478777776665443322 22223444556666666666666667899999999999
Q ss_pred HhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccccccccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHhh
Q 020761 114 LLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLV 193 (321)
Q Consensus 114 ~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~ 193 (321)
++....|+++++....++|.|++..-|.++....+|.......|. +.+..|..+++...++.+.+.+..|+..
T Consensus 108 v~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~-------sf~~~gY~w~~~n~~~~a~~~v~~kk~v 180 (314)
T KOG1444|consen 108 VFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDL-------SFNLRGYSWALANCLTTAAFVVYVKKSV 180 (314)
T ss_pred HHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccc-------eecchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999988877665 3344599999999999999999999987
Q ss_pred ccC--ChhhHHHHHHHHHHHHHHHHHHhhcccc---cccccch------hhHH------------------HhHHHHHHH
Q 020761 194 KKI--DRVEVVCMIGVYGLLVSVVQLSTLELKS---LESVKWS------TDIL------------------SGATMLILS 244 (321)
Q Consensus 194 ~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~------~~~~------------------~~a~~~~~~ 244 (321)
+.. +.+..++|..+.+.....+....++..+ .....|. ...+ .++....+.
T Consensus 181 d~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tiv 260 (314)
T KOG1444|consen 181 DSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIV 260 (314)
T ss_pred ccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeeh
Confidence 665 4677889999998888855444443211 1111121 1111 333333344
Q ss_pred HHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccCCCCCC
Q 020761 245 VLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDLLP 291 (321)
Q Consensus 245 ~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~ 291 (321)
+..+...+.+-...++|++.++...+|..+-+.|-++|++.+.++++
T Consensus 261 G~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~ 307 (314)
T KOG1444|consen 261 GAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKK 307 (314)
T ss_pred hhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhcc
Confidence 44456667777788889999999999999999999999988765543
No 32
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.30 E-value=3.8e-11 Score=96.78 Aligned_cols=195 Identities=14% Similarity=0.228 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccccccccCCCCCcch
Q 020761 90 GFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPL 169 (321)
Q Consensus 90 g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~ 169 (321)
.....+.++.|..|++..++++++.+....-.|+.+++++.+|+|+...++++.++++.|++++.+.|. +..+++
T Consensus 60 ~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN-----~~a~e~ 134 (290)
T KOG4314|consen 60 SIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADN-----EHADEI 134 (290)
T ss_pred EEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccc-----hhhhhh
Confidence 344566799999999999999999999999999999999999999999999999999999999999764 456788
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHH---HHHHHHHHh-----hcc-cccccccchhhHH-----
Q 020761 170 LGDILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGL---LVSVVQLST-----LEL-KSLESVKWSTDIL----- 235 (321)
Q Consensus 170 ~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~---~~~~i~~~~-----~~~-~~~~~~~~~~~~~----- 235 (321)
.|+..+..++.+.|+|-|+.|+..++.+--+...+....|. ++...|... .|. +.+...+|.....
T Consensus 135 iGi~~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qsFA~~PWG~l~G~A~L~ 214 (290)
T KOG4314|consen 135 IGIACAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGVEHLQSFAAAPWGCLCGAAGLS 214 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHHHhhCCchhhhhHHHHH
Confidence 99999999999999999999999887654333333332332 222222221 121 1233345543221
Q ss_pred -------------HhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccCCCC
Q 020761 236 -------------SGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDL 289 (321)
Q Consensus 236 -------------~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 289 (321)
..+...++.+....+.....+.++-+-..+.....|..+|..|.++...++.+.
T Consensus 215 lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~d~~ 281 (290)
T KOG4314|consen 215 LAFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPEDKD 281 (290)
T ss_pred HHHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheecccchh
Confidence 222222222222333345556555455567788999999999999988766543
No 33
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.30 E-value=2.7e-11 Score=92.53 Aligned_cols=100 Identities=24% Similarity=0.410 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHhhhccc------c-cchhhHHHHHHHHHHH-HHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHH
Q 020761 58 VLCYLSLALAYGGILLYRRQ------R-LQVSWYWYLLLGFVDV-QGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWV 129 (321)
Q Consensus 58 ~~r~~~~~l~l~~~~~~~~~------~-~~~~~~~~~~~g~~~~-~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l 129 (321)
.+|+..+.+.+..+...+++ . .++++.+....|.++. ..+.++++|+++.+ +.++++.++.|+++.+++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 46888888877776654321 1 2334555666688776 55889999999999 58889999999999999999
Q ss_pred HhhcchhHHHHHHHHHHHHhhhhhccccc
Q 020761 130 FLGTRYSVWQLFGASLCVLGLGLMLLSDA 158 (321)
Q Consensus 130 ~l~er~~~~~~~~~~l~~~Gv~l~~~~~~ 158 (321)
++|||++++++.+++++++|++++.++|.
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999999765
No 34
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.20 E-value=1.6e-11 Score=103.89 Aligned_cols=256 Identities=13% Similarity=0.146 Sum_probs=172.8
Q ss_pred HHHHHHhHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHHHHhh-hcccccchhhHHHHHHHHHHHHHHHHHHHhhhc-c
Q 020761 31 VSFSLALSSFTTAVITDL-GVDAPITQSVLCYLSLALAYGGILL-YRRQRLQVSWYWYLLLGFVDVQGNFLFNKAFQF-T 107 (321)
Q Consensus 31 ~a~~~~~~~~~~~~l~~~-~~~~p~~~~~~r~~~~~l~l~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~-~ 107 (321)
..+.-++++...-..... +-.+--.+++.++++-+.-=++..- ....+.+.+.+.|...-......+.+-++++++ +
T Consensus 10 ~vf~GCcsnvv~lE~L~~~~pgsgNLITFaqFlFia~eGlif~skf~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I 89 (330)
T KOG1583|consen 10 LVFGGCCSNVVFLELLVRNEPGSGNLITFAQFLFIATEGLIFTSKFFTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNI 89 (330)
T ss_pred HHHHhhhchHHHHHHHHHhCCCCeeehHHHHHHHHHHhceeeeccccccCCCCchhhhheehheeeeeeeeccceeeecc
Confidence 333334445444443322 2223456777777765543322221 112234455666666666656668899999987 5
Q ss_pred hhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcccccc---c------cCC---CCCcchhhhHHH
Q 020761 108 SISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAE---M------AGG---GGSRPLLGDILV 175 (321)
Q Consensus 108 ~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~---~------~~~---~~~~~~~G~~l~ 175 (321)
|...-.++.+-.++.+++++++++|+|.+.+|+.++.+..+|+++.+..+.. + .++ .......|+.+.
T Consensus 90 ~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL 169 (330)
T KOG1583|consen 90 PMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALL 169 (330)
T ss_pred cceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHH
Confidence 6667778889999999999999999999999999999999999998875432 1 010 111234888888
Q ss_pred HHHHHHHHHHHHHHHHhhccC--ChhhHHHHHHHHHHHHHHHHH--------Hhhccc--ccc------cccchhhHH--
Q 020761 176 IAGAIFFAMSYVGEEFLVKKI--DRVEVVCMIGVYGLLVSVVQL--------STLELK--SLE------SVKWSTDIL-- 235 (321)
Q Consensus 176 l~aa~~~a~~~v~~k~~~~~~--~~~~~~~~~~~~~~~~~~i~~--------~~~~~~--~~~------~~~~~~~~~-- 235 (321)
..+-+..|...+.++...+++ |+.+.++|..+.+....++.. ..+..+ ..| +..|.....
T Consensus 170 ~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~ 249 (330)
T KOG1583|consen 170 VFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNV 249 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHHHHHHHHH
Confidence 899999999999999988887 789999999988877662221 011111 111 112332221
Q ss_pred ----------------HhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccC
Q 020761 236 ----------------SGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTA 286 (321)
Q Consensus 236 ----------------~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 286 (321)
.++...++...++-.++.++|.+.|+.+++++.|+|..++..|.+++...-
T Consensus 250 L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~ 316 (330)
T KOG1583|consen 250 LTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVW 316 (330)
T ss_pred HHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 333333344457899999999999999999999999999999999987543
No 35
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.19 E-value=4.2e-12 Score=107.18 Aligned_cols=237 Identities=16% Similarity=0.160 Sum_probs=175.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHhhhcc--------cccc---hhhHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHhhcC
Q 020761 50 VDAPITQSVLCYLSLALAYGGILLYRR--------QRLQ---VSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCC 118 (321)
Q Consensus 50 ~~~p~~~~~~r~~~~~l~l~~~~~~~~--------~~~~---~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~ 118 (321)
.+.|...++++.+....++..+..-.+ .+.+ +..+..+-+.++...+-.+-++.++|++++...+-.++
T Consensus 58 Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsL 137 (347)
T KOG1442|consen 58 LDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSL 137 (347)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccch
Confidence 568999999999988777766543211 1111 12234445555555555566789999999999999999
Q ss_pred chHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccccccccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCC-
Q 020761 119 AIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVKKID- 197 (321)
Q Consensus 119 ~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~- 197 (321)
..+|+++++++++|+|-+..-..+..+.+.|-.+=+..+ +..+...+.|.+++..+.++-|+..+..||.....+
T Consensus 138 ttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE----~~~~~ls~~GvifGVlaSl~vAlnaiytkk~l~~v~~ 213 (347)
T KOG1442|consen 138 TTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQE----GSTGTLSWIGVIFGVLASLAVALNAIYTKKVLPPVGD 213 (347)
T ss_pred hhhHHHHhHHhhcccccccccceeehhheehheeccccc----cccCccchhhhHHHHHHHHHHHHHHHhhheecccccC
Confidence 999999999999999999999999888888876644422 234556789999999999999999999998655542
Q ss_pred -hhhHHHHHHHHHHHHHHHHHHhhccc-----ccccc--cchhhHH--------------------HhHHHHHHHHHHHH
Q 020761 198 -RVEVVCMIGVYGLLVSVVQLSTLELK-----SLESV--KWSTDIL--------------------SGATMLILSVLTSD 249 (321)
Q Consensus 198 -~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~--~~~~~~~--------------------~~a~~~~~~~~~~p 249 (321)
-...++|..+.+.++. +|.....++ .+|.. .|.|..+ .++..-|++....-
T Consensus 214 ~iw~lt~ynnv~a~lLf-lpll~lnge~~~v~~~~~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka 292 (347)
T KOG1442|consen 214 CIWRLTAYNNVNALLLF-LPLLILNGEFQAVVGFPHLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKA 292 (347)
T ss_pred eehhhHHHHHHHHHHHH-HHHHHHcchHHHHcCcccchHHHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHH
Confidence 4577888898888888 776654431 11221 1222222 66666667666677
Q ss_pred HHHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccCCCCCC
Q 020761 250 MWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDLLP 291 (321)
Q Consensus 250 v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~~ 291 (321)
..-.+++..+++|..+..-|.|-.+++.|...|++.++++.+
T Consensus 293 ~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~em~ 334 (347)
T KOG1442|consen 293 AAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEHEMR 334 (347)
T ss_pred HHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHHHHH
Confidence 777888899999999999999999999999999987765543
No 36
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.16 E-value=5.7e-09 Score=90.25 Aligned_cols=198 Identities=15% Similarity=0.171 Sum_probs=138.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHhh-cCchHHHHHHHHHHhhcchhHHHHH----HHHHHHHhhhhhcc
Q 020761 81 VSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLD-CCAIPCAIVFTWVFLGTRYSVWQLF----GASLCVLGLGLMLL 155 (321)
Q Consensus 81 ~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~-~~~pi~~~ils~l~l~er~~~~~~~----~~~l~~~Gv~l~~~ 155 (321)
..+..-++.|++...++..++.++++.+++.+.++. ...-+.+.+++.++++|.-+..+++ ++++.++|+.+.+.
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 566667788888899999999999999999999997 5556679999999999988766554 88888999999998
Q ss_pred ccccccCC-CCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHhhccc-ccccccchhh
Q 020761 156 SDAEMAGG-GGSRPLLGDILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELK-SLESVKWSTD 233 (321)
Q Consensus 156 ~~~~~~~~-~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~ 233 (321)
.|..++.. .+.+...|....+++.+.|..|.+..|.. +.|+.....=+. .|.++..+.+...... ..++..|...
T Consensus 123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~--~~~~~~~~lPqa-iGm~i~a~i~~~~~~~~~~~k~~~~ni 199 (269)
T PF06800_consen 123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF--HVSGWSAFLPQA-IGMLIGAFIFNLFSKKPFFEKKSWKNI 199 (269)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc--CCChhHhHHHHH-HHHHHHHHHHhhcccccccccchHHhh
Confidence 77532221 23455689999999999999999998763 457766555443 3333332333332221 1222222211
Q ss_pred H---H--------------HhHHHHHHHHHHHHHHHHHHHHHHhcccchHH----HHhHHHHHhhhhhe
Q 020761 234 I---L--------------SGATMLILSVLTSDMWAVILRIFCYHQQVNWT----YYLAFAAVLIGLII 281 (321)
Q Consensus 234 ~---~--------------~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~----~~~G~~li~~g~~l 281 (321)
. + .+.........+.++++.+.+.+++||.-+.. .++|.++++.|.++
T Consensus 200 l~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 200 LTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred HHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 1 1 33333334445789999999999999987754 56788888887654
No 37
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.07 E-value=5e-09 Score=91.92 Aligned_cols=130 Identities=22% Similarity=0.257 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhcccc---cchhhHHHHHHHHHHHH-HH
Q 020761 22 LYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQR---LQVSWYWYLLLGFVDVQ-GN 97 (321)
Q Consensus 22 ~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~---~~~~~~~~~~~g~~~~~-~~ 97 (321)
.+|....++.++.+...+...++...+.-.++.....+++.++.+++.+.....++. .+++|...+..+.++.. ++
T Consensus 127 ~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (260)
T TIGR00950 127 PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALAY 206 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 467777766666666667766666542211344555577888888887776543222 23455556667777644 48
Q ss_pred HHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhh
Q 020761 98 FLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLG 151 (321)
Q Consensus 98 ~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~ 151 (321)
.++++++++.+++.++.+.++.|++++++++++++||++..++.|..+.+.|+.
T Consensus 207 ~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 207 FLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999999999999999863
No 38
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.92 E-value=5.5e-08 Score=73.19 Aligned_cols=113 Identities=19% Similarity=0.225 Sum_probs=85.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHhhcccc----cccccchhhHHHhHHHHH---H
Q 020761 171 GDILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKS----LESVKWSTDILSGATMLI---L 243 (321)
Q Consensus 171 G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~a~~~~---~ 243 (321)
...+++++|+++++..++.|-..++.||...+..-.+...+++.......+..+ ..+..|...++.+ .... +
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSG-la~glswl 82 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSG-LAGGLSWL 82 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHH-HHHHHHHH
Confidence 578999999999999999999999899998888888887777744433333322 2334555444411 1111 1
Q ss_pred HHH----------------HHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeec
Q 020761 244 SVL----------------TSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYST 284 (321)
Q Consensus 244 ~~~----------------~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 284 (321)
..+ ++|++++++++++++|++|..+++|+++|++|.++..+
T Consensus 83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 111 67999999999999999999999999999999998775
No 39
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=98.90 E-value=7.8e-08 Score=79.30 Aligned_cols=239 Identities=12% Similarity=0.071 Sum_probs=168.0
Q ss_pred cCCChhHHHHHHHHHHHHHHHHHHhhhc---ccccchhhHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHhhcCchHHHH
Q 020761 48 LGVDAPITQSVLCYLSLALAYGGILLYR---RQRLQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAI 124 (321)
Q Consensus 48 ~~~~~p~~~~~~r~~~~~l~l~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ 124 (321)
.++.--+.+.+.+-+.+...+..+-+.+ .| .++.+..+..+++.+..-+.-..++||.++...++..++..+.++
T Consensus 32 ~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR--~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFKNltII~iA 109 (309)
T COG5070 32 LGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFR--LTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFKNLTIILIA 109 (309)
T ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhHhhee--hhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhccceeehhH
Confidence 3554455666666555544443332211 12 122223334455555554555689999999999999999999999
Q ss_pred HHHHHHhhcchhHHHHHHHHHHHHhhhhhccccccccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccCC--hhhHH
Q 020761 125 VFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVKKID--RVEVV 202 (321)
Q Consensus 125 ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~--~~~~~ 202 (321)
....+++|.|.+..+..+.++.++.-+...++|.............|.+++...++..+.+....|+..+-.+ ..+.+
T Consensus 110 ygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtm 189 (309)
T COG5070 110 YGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTM 189 (309)
T ss_pred hhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHH
Confidence 9999999999999999999999999888888775211111112337999999999999999999998776543 67789
Q ss_pred HHHHHHHHHHHHHHHHhhcccccc-------cccchhhHH------------------HhHHHHHHHHHHHHHHHHHHHH
Q 020761 203 CMIGVYGLLVSVVQLSTLELKSLE-------SVKWSTDIL------------------SGATMLILSVLTSDMWAVILRI 257 (321)
Q Consensus 203 ~~~~~~~~~~~~i~~~~~~~~~~~-------~~~~~~~~~------------------~~a~~~~~~~~~~pv~~~~~~~ 257 (321)
+|..+.+..+++.....+|..... .....+..+ .++...+..+.++-.-..+.|.
T Consensus 190 fYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGl 269 (309)
T COG5070 190 FYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGL 269 (309)
T ss_pred HHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhh
Confidence 999999999985555555432111 101011111 6777777777788888899999
Q ss_pred HHhcccchHHHHhHHHHHhhhhheeeccCCC
Q 020761 258 FCYHQQVNWTYYLAFAAVLIGLIIYSTTAKD 288 (321)
Q Consensus 258 ~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~ 288 (321)
++|+|+.+...+..+.+=..+-.+|.+.+++
T Consensus 270 vffdap~nf~si~sillGflsg~iYavaks~ 300 (309)
T COG5070 270 VFFDAPVNFLSIFSILLGFLSGAIYAVAKSK 300 (309)
T ss_pred hhcCCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988877776777766554
No 40
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.80 E-value=1.7e-07 Score=80.39 Aligned_cols=174 Identities=14% Similarity=0.196 Sum_probs=113.8
Q ss_pred hhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcccccc----------------ccC----CCCCc
Q 020761 108 SISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAE----------------MAG----GGGSR 167 (321)
Q Consensus 108 ~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~----------------~~~----~~~~~ 167 (321)
+........+..++++++..+.+.+||++..++++.++...|++.....|.. ++. ....+
T Consensus 3 svPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g~ 82 (222)
T TIGR00803 3 SVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFGN 82 (222)
T ss_pred cccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCcccccccc
Confidence 3444566778888888888888888888888888888888887754333221 000 11124
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhccCChh--hHHHHHHHHHHHHHHHHHHhhcc-cc---------cccccchhhHH
Q 020761 168 PLLGDILVIAGAIFFAMSYVGEEFLVKKIDRV--EVVCMIGVYGLLVSVVQLSTLEL-KS---------LESVKWSTDIL 235 (321)
Q Consensus 168 ~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~-~~---------~~~~~~~~~~~ 235 (321)
...|....+.+.++.+...+.+++..|+.+.. .......+++.+.. ........ .. .+...|.....
T Consensus 83 ~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (222)
T TIGR00803 83 PVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFST-FSVLLWSDGTLISNFGFFIGYPTAVWIVGLL 161 (222)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHH-HHHHhhcccchhhccCcccCCchHHHHHHHH
Confidence 56778888888888889999999987765322 12222222332222 11111111 10 01111111111
Q ss_pred --------------HhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhhee
Q 020761 236 --------------SGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIY 282 (321)
Q Consensus 236 --------------~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~ 282 (321)
.++...++...++++++.+++.+++||+++..++.|+.+++.|+++|
T Consensus 162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222 (222)
T ss_pred HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence 77888888888999999999999999999999999999999998765
No 41
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.78 E-value=1.6e-07 Score=84.02 Aligned_cols=130 Identities=12% Similarity=-0.015 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhccc-----ccchhhHHHHHHHHHHHHH-
Q 020761 23 YLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQ-----RLQVSWYWYLLLGFVDVQG- 96 (321)
Q Consensus 23 ~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~-----~~~~~~~~~~~~g~~~~~~- 96 (321)
.|.+.+++.++++...+...++... . ++...+.+.+.++++.+.+....... .....|......+++....
T Consensus 150 ~G~l~~l~a~~~~a~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~ 226 (292)
T PRK11272 150 WGAILILIASASWAFGSVWSSRLPL--P-VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIA 226 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--C-cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 4555655555555555555555432 1 34455667777777776665543211 1234566666777765544
Q ss_pred HHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcc
Q 020761 97 NFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLL 155 (321)
Q Consensus 97 ~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~ 155 (321)
+.++++++++.+++.++++.++.|++++++++++++|+++..+++|.++.+.|+.+...
T Consensus 227 ~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 227 ISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999998866
No 42
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.78 E-value=2.2e-07 Score=85.12 Aligned_cols=135 Identities=16% Similarity=0.128 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhc-cccc-------chhhHHHHHHHHHH
Q 020761 22 LYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYR-RQRL-------QVSWYWYLLLGFVD 93 (321)
Q Consensus 22 ~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~-~~~~-------~~~~~~~~~~g~~~ 93 (321)
..|.++....+++|.......++... .++++...+++...++++.+.+..... +... .......+..++..
T Consensus 188 ~lG~~l~l~aa~~wa~~~il~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~y~~i~t 266 (358)
T PLN00411 188 LIGGALLTIQGIFVSVSFILQAHIMS-EYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITLITIVTMAIIT 266 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHHHHHHHHHHHH
Confidence 44656654444444444555555543 453555666666666555554433321 1110 11111122233333
Q ss_pred HHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcccc
Q 020761 94 VQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSD 157 (321)
Q Consensus 94 ~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~ 157 (321)
..++.++++++++.+++.+++..++.|++++++++++++|++++.+++|.++.+.|+.++...+
T Consensus 267 ~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~~~ 330 (358)
T PLN00411 267 SVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMWGK 330 (358)
T ss_pred HHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhhh
Confidence 3347789999999999999999999999999999999999999999999999999999988654
No 43
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.77 E-value=1.3e-07 Score=76.05 Aligned_cols=114 Identities=18% Similarity=0.243 Sum_probs=90.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhcc-------CChhhHHHHHHHHHHHHHHHHHHhhccccccc------------c-c-
Q 020761 171 GDILVIAGAIFFAMSYVGEEFLVKK-------IDRVEVVCMIGVYGLLVSVVQLSTLELKSLES------------V-K- 229 (321)
Q Consensus 171 G~~l~l~aa~~~a~~~v~~k~~~~~-------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~------------~-~- 229 (321)
|.++++.|.++.|++.++.|+..++ .++.+...+....+.+++.++....|...... . .
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 6789999999999999999998766 26888999999999999855555555432110 0 0
Q ss_pred chhhHH------------------HhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeec
Q 020761 230 WSTDIL------------------SGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYST 284 (321)
Q Consensus 230 ~~~~~~------------------~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~ 284 (321)
+..... .++...++......+..++.++++++|+++..++.|.++.+.|+++|++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence 110100 7888888888899999999999999999999999999999999999975
No 44
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.75 E-value=3.1e-07 Score=82.11 Aligned_cols=133 Identities=15% Similarity=-0.027 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhcccc---cchhhHHHHHHHHHHHHH-H
Q 020761 22 LYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQR---LQVSWYWYLLLGFVDVQG-N 97 (321)
Q Consensus 22 ~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~---~~~~~~~~~~~g~~~~~~-~ 97 (321)
..|.++++..++.+.......++.. ++. +|....+. ..++++.+.+........ ....+...+..|++.... +
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~-~~~-~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~ 223 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAG-AEH-GPATVAIG-SLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPY 223 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHh-ccC-CchHHHHH-HHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHH
Confidence 3566676555655555555556654 344 56665544 445555555554433221 112233345667665555 7
Q ss_pred HHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcccc
Q 020761 98 FLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSD 157 (321)
Q Consensus 98 ~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~ 157 (321)
.++++++++.+++.++++.++.|+++.++++++++|+++..+++|..+.+.|++......
T Consensus 224 ~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 224 SLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999999999999999999986644
No 45
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=98.67 E-value=1.1e-07 Score=73.33 Aligned_cols=103 Identities=19% Similarity=0.295 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHhhccc---ccccccchhhHH-------------------Hh
Q 020761 180 IFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELK---SLESVKWSTDIL-------------------SG 237 (321)
Q Consensus 180 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~-------------------~~ 237 (321)
++||.+.+..|+..++.|+...+.+.+..+.+ ..+.....+.. ..+...+..... .+
T Consensus 1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 79 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYIS 79 (126)
T ss_pred ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcc
Confidence 46889999999999999999999999999987 42333333322 122222221111 66
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheee
Q 020761 238 ATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYS 283 (321)
Q Consensus 238 a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 283 (321)
+...+....++|+++.++++++++|++++.+++|+.+++.|+++.+
T Consensus 80 ~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 80 ASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 6677777778999999999999999999999999999999988754
No 46
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.59 E-value=1.3e-06 Score=78.12 Aligned_cols=128 Identities=17% Similarity=0.019 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhccc----ccchhhHHHHHHHHHHHHHHH
Q 020761 23 YLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQ----RLQVSWYWYLLLGFVDVQGNF 98 (321)
Q Consensus 23 ~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~----~~~~~~~~~~~~g~~~~~~~~ 98 (321)
.|.++.++.++++...+...++... +. +|..... ...+..+.+....... .....|...+..+.....++.
T Consensus 156 ~G~~~~l~aa~~~A~~~v~~k~~~~-~~-~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~ 230 (295)
T PRK11689 156 LSYGLAFIGAFIWAAYCNVTRKYAR-GK-NGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYA 230 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccC-CC-CchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHH
Confidence 3556655555555555666666643 34 5554322 2223333322221211 112344444555544444599
Q ss_pred HHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcc
Q 020761 99 LFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLL 155 (321)
Q Consensus 99 ~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~ 155 (321)
++++++++.+++.++.+.++.|++.+++++++++|+++..+++|.++.+.|+.+...
T Consensus 231 l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 231 AWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 999999999999999999999999999999999999999999999999999988765
No 47
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.59 E-value=5.7e-06 Score=73.85 Aligned_cols=64 Identities=27% Similarity=0.397 Sum_probs=58.6
Q ss_pred HHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcccc
Q 020761 94 VQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSD 157 (321)
Q Consensus 94 ~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~ 157 (321)
..+..+.+.|+.+.|++..+++..+.-++..+++..++|||+++.++.|..+++.|..++....
T Consensus 61 ~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 61 VLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA 124 (300)
T ss_pred hcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence 3447788899999999999999999999999999999999999999999999999999877643
No 48
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.57 E-value=2.8e-06 Score=76.26 Aligned_cols=136 Identities=16% Similarity=0.099 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHhh-hcc---------cccchhhHHHHHHH
Q 020761 22 LYLLLLGQLVSFSLALSSFTTAVITDLGV-DAPITQSVLCYLSLALAYGGILL-YRR---------QRLQVSWYWYLLLG 90 (321)
Q Consensus 22 ~~~~~~~~~~a~~~~~~~~~~~~l~~~~~-~~p~~~~~~r~~~~~l~l~~~~~-~~~---------~~~~~~~~~~~~~g 90 (321)
..|..+.++.++++.......++...+.- ........+..+.+.+.+..... ... ......|...+..|
T Consensus 142 ~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 221 (299)
T PRK11453 142 MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLA 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHH
Confidence 35777776666666666777777653221 12223333334443333322211 111 11223566666777
Q ss_pred HHHHHH-HHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcccc
Q 020761 91 FVDVQG-NFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSD 157 (321)
Q Consensus 91 ~~~~~~-~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~ 157 (321)
.+.... +.+++.++++.+++.++.+..+.|++..++++++++|+++..+++|.++.+.|+.+...+.
T Consensus 222 i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 222 FVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 766655 8889999999999999999999999999999999999999999999999999999887644
No 49
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.57 E-value=1.3e-06 Score=66.17 Aligned_cols=66 Identities=8% Similarity=-0.021 Sum_probs=58.9
Q ss_pred HHHHHHH-HHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcc
Q 020761 90 GFVDVQG-NFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLL 155 (321)
Q Consensus 90 g~~~~~~-~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~ 155 (321)
+.+..+. ..++..+++..|.+.+..+.++.++++.+++++++|||++++|++|+.+.++|++++..
T Consensus 43 ~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 43 ALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3344444 88889999999999999999999999999999999999999999999999999988754
No 50
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.53 E-value=4.4e-05 Score=68.91 Aligned_cols=206 Identities=12% Similarity=0.074 Sum_probs=129.1
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHh-hcCchHHHHHHHHHHhhcch-------hHHHHHHHHHHHHhh
Q 020761 79 LQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLL-DCCAIPCAIVFTWVFLGTRY-------SVWQLFGASLCVLGL 150 (321)
Q Consensus 79 ~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~ils~l~l~er~-------~~~~~~~~~l~~~Gv 150 (321)
....+..-++.|.+...++..++.+++|..++.+.++ ..+.-+...++..++++|-. ......|+++.++|+
T Consensus 69 ~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi 148 (345)
T PRK13499 69 SGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGV 148 (345)
T ss_pred CHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHH
Confidence 3445566677788888889999999999999999877 47888899999999988654 234677899999999
Q ss_pred hhhccccccccC------CCCCcchhhhHHHHHHHHHHHHHH-------HHHHHhh-ccCChhhHHHHHHH---HHHHHH
Q 020761 151 GLMLLSDAEMAG------GGGSRPLLGDILVIAGAIFFAMSY-------VGEEFLV-KKIDRVEVVCMIGV---YGLLVS 213 (321)
Q Consensus 151 ~l~~~~~~~~~~------~~~~~~~~G~~l~l~aa~~~a~~~-------v~~k~~~-~~~~~~~~~~~~~~---~~~~~~ 213 (321)
++........+. +.+.+...|++.++++.+.++.|. ...+... ...++.....-+.. .+.++.
T Consensus 149 ~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~~~g~~~~~~~lp~~~~~~~G~~~~ 228 (345)
T PRK13499 149 AIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAAALGVDPLYAALPSYVVIMGGGAIT 228 (345)
T ss_pred HHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhcCCCchHHHHHHHHHHHHHHHHH
Confidence 999883322111 123455699999999999999999 4444321 12233322222221 333333
Q ss_pred HHHHHhh---ccccc----cc-cc----chhh---HH-------------HhHH---------HHHHHHHHHHHHHHHHH
Q 020761 214 VVQLSTL---ELKSL----ES-VK----WSTD---IL-------------SGAT---------MLILSVLTSDMWAVILR 256 (321)
Q Consensus 214 ~i~~~~~---~~~~~----~~-~~----~~~~---~~-------------~~a~---------~~~~~~~~~pv~~~~~~ 256 (321)
-..+-.+ ..... +. .+ +... ++ .++. -..+.+.+..+++.+++
T Consensus 229 n~~~~~~~~~k~~~~~~~~~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwG 308 (345)
T PRK13499 229 NLGFCFIRLAKNKDLSLKADFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWG 308 (345)
T ss_pred HHHHHHHHHhhCCCcccchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhh
Confidence 2222221 11111 10 00 2110 11 1111 11133345678899999
Q ss_pred HHHhcccch------HHHHhHHHHHhhhhheeecc
Q 020761 257 IFCYHQQVN------WTYYLAFAAVLIGLIIYSTT 285 (321)
Q Consensus 257 ~~~~~e~~~------~~~~~G~~li~~g~~l~~~~ 285 (321)
.+ +||.=+ ...++|+++++.|..+....
T Consensus 309 i~-lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 309 LV-LKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred hh-hhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 84 899866 67789999999988776544
No 51
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.51 E-value=6.5e-07 Score=79.58 Aligned_cols=68 Identities=25% Similarity=0.224 Sum_probs=59.8
Q ss_pred HHHHHHHHH-HHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhh
Q 020761 85 WYLLLGFVD-VQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGL 152 (321)
Q Consensus 85 ~~~~~g~~~-~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l 152 (321)
.....+.+. ..++.++++++++.+++.++...++.|++..+++++++||+++..+++|..+.++|+.+
T Consensus 212 ~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 212 PSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 344444444 44588999999999999999999999999999999999999999999999999999976
No 52
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.48 E-value=2.2e-06 Score=76.44 Aligned_cols=130 Identities=12% Similarity=0.120 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHH----HHHHHHHHHhhhcccccchhhHHHHHHHHHHHHH
Q 020761 21 TLYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYL----SLALAYGGILLYRRQRLQVSWYWYLLLGFVDVQG 96 (321)
Q Consensus 21 ~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~----~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 96 (321)
..+|++.+++.++..+......+.. +. +|...++.... .+.++..+. .+.++...+..+..++.|++...+
T Consensus 150 ~~~Gi~~~l~sg~~y~~~~~~~~~~---~~-~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Gi~~~ia 224 (290)
T TIGR00776 150 FKKGILLLLMSTIGYLVYVVVAKAF---GV-DGLSVLLPQAIGMVIGGIIFNLGH-ILAKPLKKYAILLNILPGLMWGIG 224 (290)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHc---CC-CcceehhHHHHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHHHHH
Confidence 3568888888877776666555544 24 67776444433 333333332 111222222333455577776555
Q ss_pred HHHHHHhhh-cchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHH----HHHHHHHHhhhhhcc
Q 020761 97 NFLFNKAFQ-FTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQL----FGASLCVLGLGLMLL 155 (321)
Q Consensus 97 ~~~~~~al~-~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~----~~~~l~~~Gv~l~~~ 155 (321)
+.+|+.+.+ +.+++.++++.+..|+...+++++++||+.+++++ +|.++.+.|+.++..
T Consensus 225 ~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 225 NFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 889999999 99999999999999999999999999999999999 999999999988754
No 53
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.47 E-value=3.9e-06 Score=75.20 Aligned_cols=71 Identities=11% Similarity=0.201 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccc
Q 020761 86 YLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLS 156 (321)
Q Consensus 86 ~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~ 156 (321)
....|.....++.++++++++.+++.++++.++.|++..++++++++|+++..++.|.++.++|+.++...
T Consensus 216 ~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~ 286 (296)
T PRK15430 216 LIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMD 286 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556999999999999999999999999999999999999999999999999999998887663
No 54
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.46 E-value=7.9e-06 Score=65.56 Aligned_cols=128 Identities=15% Similarity=0.115 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhc-----CCChhHHHHHHHHHHHHHHHHHHhhhc-ccc---------------cchhh
Q 020761 25 LLLGQLVSFSLALSSFTTAVITDL-----GVDAPITQSVLCYLSLALAYGGILLYR-RQR---------------LQVSW 83 (321)
Q Consensus 25 ~~~~~~~a~~~~~~~~~~~~l~~~-----~~~~p~~~~~~r~~~~~l~l~~~~~~~-~~~---------------~~~~~ 83 (321)
.++++..++....-....++...+ ...+|..+..+.-..+.+.+.+..... +.. .++.+
T Consensus 2 ~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 81 (153)
T PF03151_consen 2 FILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFI 81 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHH
Confidence 344445555555556666665544 234889988888888888887765422 111 11233
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhh
Q 020761 84 YWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGL 152 (321)
Q Consensus 84 ~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l 152 (321)
...+..|.+....++..+..++++++...+++.....+.+.++++++++|+++..++.|++++++|+.+
T Consensus 82 ~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 82 FLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 444455666666699999999999999999999999999999999999999999999999999999875
No 55
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.43 E-value=2.8e-06 Score=76.29 Aligned_cols=135 Identities=13% Similarity=0.093 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhc-CCChhHHHHHHHHHHHHHHHHHHhhhccc-c-cch---------h---hHH-
Q 020761 22 LYLLLLGQLVSFSLALSSFTTAVITDL-GVDAPITQSVLCYLSLALAYGGILLYRRQ-R-LQV---------S---WYW- 85 (321)
Q Consensus 22 ~~~~~~~~~~a~~~~~~~~~~~~l~~~-~~~~p~~~~~~r~~~~~l~l~~~~~~~~~-~-~~~---------~---~~~- 85 (321)
..|.+++++.++.+.......++...+ +. +|.....+....+.+.+.|....... . ... . ...
T Consensus 144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~-~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (302)
T TIGR00817 144 WAGFLSAMISNITFVSRNIFSKKAMTIKSL-DKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTV 222 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCC-CcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHH
Confidence 356666655555555545555555432 45 88888888888888888877553211 1 110 0 011
Q ss_pred HHHHHHHHHH-HHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcccc
Q 020761 86 YLLLGFVDVQ-GNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSD 157 (321)
Q Consensus 86 ~~~~g~~~~~-~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~ 157 (321)
.+..+..... .+.+++.+++++++..+++.....|++++++++++++|+++..+++|.+++++|+.+....+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k 295 (302)
T TIGR00817 223 SLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVK 295 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHh
Confidence 1111221111 24566789999999999999999999999999999999999999999999999999876643
No 56
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.35 E-value=2.5e-05 Score=69.19 Aligned_cols=132 Identities=28% Similarity=0.312 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHH-HHHHHHHHHHHHHhhhcc--cccchhhHHHHHHHHHHHH-H
Q 020761 21 TLYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSV-LCYLSLALAYGGILLYRR--QRLQVSWYWYLLLGFVDVQ-G 96 (321)
Q Consensus 21 ~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~-~r~~~~~l~l~~~~~~~~--~~~~~~~~~~~~~g~~~~~-~ 96 (321)
...|..++.+.++.+.......++.. .. ++..... +.+........+...... ......+......|.+... +
T Consensus 152 ~~~g~~~~l~a~~~~a~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~ 228 (292)
T COG0697 152 SLLGLLLALAAALLWALYTALVKRLS--RL-GPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLA 228 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc--CC-ChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHH
Confidence 45667776666666665566655555 32 4555554 333322332322222222 2334567777777887775 5
Q ss_pred HHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcc
Q 020761 97 NFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLL 155 (321)
Q Consensus 97 ~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~ 155 (321)
+.+++++++..+++.++++..+.|++..++++++++|+++..++.|..+.+.|+.+...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~ 287 (292)
T COG0697 229 YLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL 287 (292)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998865
No 57
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=4.3e-06 Score=73.07 Aligned_cols=69 Identities=22% Similarity=0.441 Sum_probs=60.8
Q ss_pred HHHH-HHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccccc
Q 020761 90 GFVD-VQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDA 158 (321)
Q Consensus 90 g~~~-~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~ 158 (321)
|.+- ..+...-|.|+.|.|++..+++..+..+..++++..+++||+++...+|..++++|-.+++....
T Consensus 70 G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP 139 (335)
T KOG2922|consen 70 GMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAP 139 (335)
T ss_pred HHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecC
Confidence 4433 33477788999999999999999999999999999999999999999999999999999988443
No 58
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.22 E-value=4.1e-05 Score=70.23 Aligned_cols=132 Identities=12% Similarity=0.062 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhc------CCChhHHHHHHHHHHHHHHHHHHhh-hccccc-----------ch-h
Q 020761 22 LYLLLLGQLVSFSLALSSFTTAVITDL------GVDAPITQSVLCYLSLALAYGGILL-YRRQRL-----------QV-S 82 (321)
Q Consensus 22 ~~~~~~~~~~a~~~~~~~~~~~~l~~~------~~~~p~~~~~~r~~~~~l~l~~~~~-~~~~~~-----------~~-~ 82 (321)
+.|.+++++.++.+..-+...++...+ .. ++.....+...+++++++|+.. ...... .. .
T Consensus 193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~ 271 (350)
T PTZ00343 193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENL-TASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYT 271 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccC-CHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccc
Confidence 467777766665555557777776543 13 4555555556777777777654 211100 01 1
Q ss_pred hHHHHHHHHHHHHH----HHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhc
Q 020761 83 WYWYLLLGFVDVQG----NFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLML 154 (321)
Q Consensus 83 ~~~~~~~g~~~~~~----~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~ 154 (321)
+...+...+..... +.+.+++++++++.++++..++.|++++++++++++|+++..+++|.+++++|+.+-.
T Consensus 272 ~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 272 KGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 11111112222222 4444469999999999999999999999999999999999999999999999998754
No 59
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.14 E-value=3.4e-05 Score=67.54 Aligned_cols=112 Identities=13% Similarity=0.183 Sum_probs=83.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHH-hhccc-----ccc---cccchhhH-H----
Q 020761 170 LGDILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLS-TLELK-----SLE---SVKWSTDI-L---- 235 (321)
Q Consensus 170 ~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~-----~~~---~~~~~~~~-~---- 235 (321)
.|..+.++++++|+...+..|. ..+.+|.+..++-++++.++. .+.. ...+. ..+ ...+.... .
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~-~~~~~~~~i~~~R~~~a~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 79 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKL-LKPLPATDILGHRMIWSFPFM-LLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLL 79 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-hccCCHHHHHHHHHHHHHHHH-HHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHH
Confidence 4889999999999999999998 456899999999999988776 3332 22210 111 11111000 0
Q ss_pred --------------HhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheee
Q 020761 236 --------------SGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYS 283 (321)
Q Consensus 236 --------------~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 283 (321)
.++...++...+.|+++.++++++++|+++..+++|..+.+.|+.+..
T Consensus 80 ~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~ 141 (256)
T TIGR00688 80 IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNI 141 (256)
T ss_pred HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 445566666778999999999999999999999999999999987654
No 60
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.08 E-value=1.7e-05 Score=61.58 Aligned_cols=70 Identities=19% Similarity=0.277 Sum_probs=61.7
Q ss_pred HHHHHHHHHHH-HHHHHHhhhcchhhHHHHhhcCchHHHHHHHHH--HhhcchhHHHHHHHHHHHHhhhhhcc
Q 020761 86 YLLLGFVDVQG-NFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWV--FLGTRYSVWQLFGASLCVLGLGLMLL 155 (321)
Q Consensus 86 ~~~~g~~~~~~-~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l--~l~er~~~~~~~~~~l~~~Gv~l~~~ 155 (321)
++..|+..... ..++.++++..|++.+.++.+..+.++.+.++. ++||++++.+++|+++.++|+.++..
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~ 122 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINL 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 45666665555 889999999999999999999999889888885 89999999999999999999999876
No 61
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.95 E-value=9.3e-05 Score=57.46 Aligned_cols=109 Identities=8% Similarity=0.119 Sum_probs=64.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHH-------------HHHHHHHHHHHHHhhcccccccccchhhHHH
Q 020761 170 LGDILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMI-------------GVYGLLVSVVQLSTLELKSLESVKWSTDILS 236 (321)
Q Consensus 170 ~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~-------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 236 (321)
.|.++.+.+.++.+..+++.|+-.++.+..+..... ...+.+...+....+.. .... .
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~~~~~~~~~~p~~~i~lgl~~~~la~~~w~~-aL~~--------~ 72 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDFIAALLAFGLALRAVLLGLAGYALSMLCWLK-ALRY--------L 72 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-HHHh--------C
Confidence 378899999999999999999988776433221110 00111111111111110 0000 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH--HhcccchHHHHhHHHHHhhhhheeeccCC
Q 020761 237 GATMLILSVLTSDMWAVILRIF--CYHQQVNWTYYLAFAAVLIGLIIYSTTAK 287 (321)
Q Consensus 237 ~a~~~~~~~~~~pv~~~~~~~~--~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 287 (321)
+...+.-.....+++..+.++. ++||++|+.+++|+.+|++|+++.++.++
T Consensus 73 ~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~~ 125 (129)
T PRK02971 73 PLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPTT 125 (129)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 1222222223345666666664 89999999999999999999999886544
No 62
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.91 E-value=0.00014 Score=63.32 Aligned_cols=121 Identities=11% Similarity=0.018 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH-hhh-cccccchhhHHHHHHHHHHHH
Q 020761 18 ALRTLYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGI-LLY-RRQRLQVSWYWYLLLGFVDVQ 95 (321)
Q Consensus 18 ~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~-~~~-~~~~~~~~~~~~~~~g~~~~~ 95 (321)
.++..+++....+.++..|.-..+.+.. +. +|....+-. .++.++-..+ ... +++..++..+.-++-|++...
T Consensus 133 ~~~~~kgi~~Ll~stigy~~Y~~~~~~~---~~-~~~~~~lPq-aiGm~i~a~i~~~~~~~~~~~k~~~~nil~G~~w~i 207 (269)
T PF06800_consen 133 KSNMKKGILALLISTIGYWIYSVIPKAF---HV-SGWSAFLPQ-AIGMLIGAFIFNLFSKKPFFEKKSWKNILTGLIWGI 207 (269)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHhc---CC-ChhHhHHHH-HHHHHHHHHHHhhcccccccccchHHhhHHHHHHHH
Confidence 3455667776656655555554443332 22 444433322 2222222111 111 222223333456788999999
Q ss_pred HHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHH
Q 020761 96 GNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGA 143 (321)
Q Consensus 96 ~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~ 143 (321)
++++++.+.+....+.+-.+.++.++...+.+.+++||+=+++++...
T Consensus 208 gnl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~ 255 (269)
T PF06800_consen 208 GNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYT 255 (269)
T ss_pred HHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHH
Confidence 999999999999999999999999999999999999999998877543
No 63
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.89 E-value=2.9e-07 Score=77.16 Aligned_cols=247 Identities=14% Similarity=0.110 Sum_probs=148.0
Q ss_pred HHHHHHHhH-HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhh-cccccchhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 020761 30 LVSFSLALS-SFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLY-RRQRLQVSWYWYLLLGFVDVQGNFLFNKAFQFT 107 (321)
Q Consensus 30 ~~a~~~~~~-~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~ 107 (321)
+...+.||+ .+++.|... .|..++.-..+.+.++-..+++. ++....+.+..-++.|.....++...+.|.++.
T Consensus 8 L~P~l~WGsip~v~~k~GG----~p~qQ~lGtT~GALifaiiv~~~~~p~~T~~~~iv~~isG~~Ws~GQ~~Qfka~~~i 83 (288)
T COG4975 8 LLPALGWGSIPLVANKFGG----KPYQQTLGTTLGALIFAIIVFLFVSPELTLTIFIVGFISGAFWSFGQANQFKAIQLI 83 (288)
T ss_pred HHHHHHhcccceeeeecCC----ChhHhhhhccHHHHHHHHHHheeecCccchhhHHHHHHhhhHhhhhhhhhhhheeee
Confidence 555677777 444444432 55555544333333332222222 333444555555667777888899999999999
Q ss_pred hhhHHHHhh-cCchHHHHHHHHHHhhcchhHHHH----HHHHHHHHhhhhhcccccc-ccCCCCCcchhhhHHHHHHHHH
Q 020761 108 SISSVTLLD-CCAIPCAIVFTWVFLGTRYSVWQL----FGASLCVLGLGLMLLSDAE-MAGGGGSRPLLGDILVIAGAIF 181 (321)
Q Consensus 108 ~~~~~~~i~-~~~pi~~~ils~l~l~er~~~~~~----~~~~l~~~Gv~l~~~~~~~-~~~~~~~~~~~G~~l~l~aa~~ 181 (321)
+++.+.++. .+.-+-+.+++++.++|..+..+. .++++.++|+.+-.+.|.+ .+.++.++.-.|....+.+.+.
T Consensus 84 GVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L~iSt~G 163 (288)
T COG4975 84 GVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVILLISTLG 163 (288)
T ss_pred eeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeeeeeeccc
Confidence 999999986 455677889999999999887654 4778889999998887752 1222333455899999999999
Q ss_pred HHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHhhcc-cccccccchhhHH-----Hh-------HHHHH-----H
Q 020761 182 FAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLEL-KSLESVKWSTDIL-----SG-------ATMLI-----L 243 (321)
Q Consensus 182 ~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~-----~~-------a~~~~-----~ 243 (321)
|-.|.++.+... .|-.....-+. .|.++..+....... ....+..|...+- .+ +.... -
T Consensus 164 Yv~yvvl~~~f~--v~g~saiLPqA-iGMv~~ali~~~~~~~~~~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FS 240 (288)
T COG4975 164 YVGYVVLFQLFD--VDGLSAILPQA-IGMVIGALILGFFKMEKRFNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFS 240 (288)
T ss_pred eeeeEeeecccc--ccchhhhhHHH-HHHHHHHHHHhhcccccchHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeee
Confidence 999999988753 33333222222 222222122222221 1112222221111 11 11100 1
Q ss_pred HHHHHHHHHHHHHHHHhcccchHHH----HhHHHHHhhhhheee
Q 020761 244 SVLTSDMWAVILRIFCYHQQVNWTY----YLAFAAVLIGLIIYS 283 (321)
Q Consensus 244 ~~~~~pv~~~~~~~~~~~e~~~~~~----~~G~~li~~g~~l~~ 283 (321)
...+..+++.+-+.++++|+-|..+ ++|+++++.|..+..
T Consensus 241 lSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg 284 (288)
T COG4975 241 LSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLG 284 (288)
T ss_pred HhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhh
Confidence 1224577788888899999888754 567777777765543
No 64
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.80 E-value=0.00048 Score=51.61 Aligned_cols=66 Identities=17% Similarity=0.229 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHHHhhhcchhhHHH-HhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhh
Q 020761 88 LLGFVDVQGNFLFNKAFQFTSISSVT-LLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLM 153 (321)
Q Consensus 88 ~~g~~~~~~~~~~~~al~~~~~~~~~-~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~ 153 (321)
..-.....+.+++..++++.|.+.+- +-...-.+.+.+.+++++||++++.|++++.+.+.|++.+
T Consensus 40 ~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 40 LSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 33333344477888999999999975 4457889999999999999999999999999999999876
No 65
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.70 E-value=0.0005 Score=52.44 Aligned_cols=64 Identities=14% Similarity=0.172 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhhhcchhhHHHHh-hcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccc
Q 020761 93 DVQGNFLFNKAFQFTSISSVTLL-DCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLS 156 (321)
Q Consensus 93 ~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~ 156 (321)
...+.+++..++++.|.+.+-.+ .....+.+.+++.++++|++++.+++++.+.++|++++-..
T Consensus 40 ~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 40 ISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 34448888999999999998766 47889999999999999999999999999999999988553
No 66
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.67 E-value=0.00048 Score=50.86 Aligned_cols=63 Identities=16% Similarity=0.198 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhhcchhhHHH-HhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcc
Q 020761 93 DVQGNFLFNKAFQFTSISSVT-LLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLL 155 (321)
Q Consensus 93 ~~~~~~~~~~al~~~~~~~~~-~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~ 155 (321)
......++-.++++.|.+.+- +-...-.+.+.+.+++++|||++..+++++.+.++|++.+-.
T Consensus 40 ~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 40 YGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred HHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 344477888999999999874 556888999999999999999999999999999999988744
No 67
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.66 E-value=0.0023 Score=48.80 Aligned_cols=40 Identities=3% Similarity=0.335 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccCC
Q 020761 248 SDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAK 287 (321)
Q Consensus 248 ~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 287 (321)
..+...+.++++|+|++|+.+++|+.+|+.|++..+...+
T Consensus 67 G~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~~ 106 (120)
T PRK10452 67 GILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGTR 106 (120)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCCC
Confidence 5666788999999999999999999999999999876553
No 68
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.57 E-value=0.0012 Score=49.15 Aligned_cols=62 Identities=18% Similarity=0.108 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhhhcchhhHHH-HhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhc
Q 020761 93 DVQGNFLFNKAFQFTSISSVT-LLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLML 154 (321)
Q Consensus 93 ~~~~~~~~~~al~~~~~~~~~-~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~ 154 (321)
...+.+++..+++..|.+.+- +-...-.+.+.+.+++++||++++.+++++.+.++|++.+-
T Consensus 39 ~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~ 101 (105)
T PRK11431 39 MIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLK 101 (105)
T ss_pred HHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhh
Confidence 344477888999999999875 44678899999999999999999999999999999998874
No 69
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.55 E-value=0.0024 Score=57.33 Aligned_cols=134 Identities=15% Similarity=0.100 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhh--ccc---------ccchhhHHHHHHHHH
Q 020761 24 LLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLY--RRQ---------RLQVSWYWYLLLGFV 92 (321)
Q Consensus 24 ~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~--~~~---------~~~~~~~~~~~~g~~ 92 (321)
|+++..+..++-...+..-.+...+.-.++.+..++..+.+.+..++.... ..+ ..+.-+...+....+
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 766654444444445555555554333388888888887777776655544 211 122234555666777
Q ss_pred HHHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcccc
Q 020761 93 DVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSD 157 (321)
Q Consensus 93 ~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~ 157 (321)
+..++.+.+.-.+..++...+++..+.-+++.+++.+++++++++.+|.|+++.+.|..+=...+
T Consensus 235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~ 299 (303)
T PF08449_consen 235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAK 299 (303)
T ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhh
Confidence 77777777788899999999999999999999999999999999999999999999998876633
No 70
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.54 E-value=0.0012 Score=49.63 Aligned_cols=62 Identities=16% Similarity=0.340 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhhcchhhHHHHh-hcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcc
Q 020761 94 VQGNFLFNKAFQFTSISSVTLL-DCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLL 155 (321)
Q Consensus 94 ~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~ 155 (321)
..+..++..++++.|.+.+-.+ .....+.+.+++++++||++++.+++|+.+.++|++++-.
T Consensus 41 ~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 41 CASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3347778899999999998666 5688899999999999999999999999999999999854
No 71
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.44 E-value=0.0056 Score=46.06 Aligned_cols=102 Identities=10% Similarity=0.025 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHhHHHHHHHHHHHHHH
Q 020761 172 DILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDILSGATMLILSVLTSDMW 251 (321)
Q Consensus 172 ~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~ 251 (321)
.++.+++.++........|+..+..++.........++..+...... . ...|. . ..-+.-..+ ..+.
T Consensus 4 wl~L~~a~~~Ev~~~~~lK~s~gf~~~~~~i~~~~~~~~sf~~l~~a-l--~~ipl---~---iAYavw~Gl----G~v~ 70 (110)
T PRK09541 4 YIYLGGAILAEVIGTTLMKFSEGFTRLWPSVGTIICYCASFWLLAQT-L--AYIPT---G---IAYAIWSGV----GIVL 70 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH-H--hhCCc---h---hHHHHHHHH----HHHH
Confidence 45677788888888888887643223333222222222222211111 1 11221 1 011111122 5566
Q ss_pred HHHHHHHHhcccchHHHHhHHHHHhhhhheeeccC
Q 020761 252 AVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTA 286 (321)
Q Consensus 252 ~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 286 (321)
+.+.++++|+|++++.+++|+.+|+.|++..+...
T Consensus 71 ~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 71 ISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 78999999999999999999999999999987544
No 72
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.43 E-value=0.004 Score=47.03 Aligned_cols=37 Identities=16% Similarity=0.365 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheee
Q 020761 247 TSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYS 283 (321)
Q Consensus 247 ~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 283 (321)
+.++++.+.+++++||++++.+++|..+++.|+++..
T Consensus 72 l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 72 LNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999999997754
No 73
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=97.33 E-value=0.0039 Score=54.27 Aligned_cols=117 Identities=11% Similarity=0.136 Sum_probs=85.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHhhcc-ccc---ccccch------------
Q 020761 168 PLLGDILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLEL-KSL---ESVKWS------------ 231 (321)
Q Consensus 168 ~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~---~~~~~~------------ 231 (321)
...|+++++.+-+.|+....+.|-. +..++.+...+-.+.+.++..+....... .+. -..+..
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~ 83 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL-EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIG 83 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 3479999999999999999998865 55688899888888888877444333221 111 011111
Q ss_pred --hhHH------HhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeecc
Q 020761 232 --TDIL------SGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTT 285 (321)
Q Consensus 232 --~~~~------~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 285 (321)
|... ....-+++..+++|++.++++.++++|+++..|++...+..+|+..-.+.
T Consensus 84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~ 145 (293)
T COG2962 84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL 145 (293)
T ss_pred HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 0000 34555667777899999999999999999999999999999999876543
No 74
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.19 E-value=0.009 Score=50.93 Aligned_cols=104 Identities=14% Similarity=-0.041 Sum_probs=77.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccccchhh---HHHHHHHHHHHHH-HHHHHHhhhcchhhHHHHhhcCchHHHHHHH
Q 020761 52 APITQSVLCYLSLALAYGGILLYRRQRLQVSW---YWYLLLGFVDVQG-NFLFNKAFQFTSISSVTLLDCCAIPCAIVFT 127 (321)
Q Consensus 52 ~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~---~~~~~~g~~~~~~-~~~~~~al~~~~~~~~~~i~~~~pi~~~ils 127 (321)
+.-.-+..-+++++++.+|+-.....+.-.++ ..-+..+++.... +.+=..++...|...-+++.++.|.+..+.+
T Consensus 175 ~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G 254 (292)
T COG5006 175 HGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSG 254 (292)
T ss_pred CCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHH
Confidence 44444556677888888887664433322222 2233445555555 7777899999999999999999999999999
Q ss_pred HHHhhcchhHHHHHHHHHHHHhhhhhcc
Q 020761 128 WVFLGTRYSVWQLFGASLCVLGLGLMLL 155 (321)
Q Consensus 128 ~l~l~er~~~~~~~~~~l~~~Gv~l~~~ 155 (321)
+++++|+++..||+++...+.+..-.+.
T Consensus 255 ~i~L~e~ls~~qwlaI~~ViaAsaG~~l 282 (292)
T COG5006 255 LIFLGETLTLIQWLAIAAVIAASAGSTL 282 (292)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999988877764443
No 75
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.17 E-value=0.014 Score=45.84 Aligned_cols=120 Identities=17% Similarity=0.191 Sum_probs=85.2
Q ss_pred HHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhccc-c---c-chhhHHHHHHHHHHHHHHHHHHHhhh
Q 020761 31 VSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQ-R---L-QVSWYWYLLLGFVDVQGNFLFNKAFQ 105 (321)
Q Consensus 31 ~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~-~---~-~~~~~~~~~~g~~~~~~~~~~~~al~ 105 (321)
.-......+....++.++ ..+|..-++..+..+.+.+..+....++ . . +.+|+ +..-|.++...-.+..+..+
T Consensus 9 aG~~i~~q~~~N~~L~~~-~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w-~~lGG~lG~~~V~~~~~~vp 86 (138)
T PF04657_consen 9 AGALIALQAAFNGQLGKA-LGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWW-AYLGGLLGVFFVLSNIILVP 86 (138)
T ss_pred HHHHHHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChH-HhccHHHHHHHHHHHHHHhh
Confidence 333444445555566543 2269999999999998888776654433 2 2 22444 45577888888888888889
Q ss_pred cchhhHHHHh-hcCchHHHHHHHHH----HhhcchhHHHHHHHHHHHHhhhh
Q 020761 106 FTSISSVTLL-DCCAIPCAIVFTWV----FLGTRYSVWQLFGASLCVLGLGL 152 (321)
Q Consensus 106 ~~~~~~~~~i-~~~~pi~~~ils~l----~l~er~~~~~~~~~~l~~~Gv~l 152 (321)
..+++....+ ..-+-+...++.++ .-|+++++.|.+|+++.++|+.+
T Consensus 87 ~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 87 RLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9988887655 45566777777775 46799999999999999999864
No 76
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.12 E-value=0.0043 Score=55.54 Aligned_cols=110 Identities=15% Similarity=0.227 Sum_probs=70.5
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHhhccCCh---------hh----HHHHHHHHHHHHHHHHHHhhcccccccccchh
Q 020761 166 SRPLLGDILVIAGAIFFAMSYVGEEFLVKKIDR---------VE----VVCMIGVYGLLVSVVQLSTLELKSLESVKWST 232 (321)
Q Consensus 166 ~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~---------~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 232 (321)
.+...|..+++.|+++.+....++|+...+.+. .. ..+|..+....+. +.. +...
T Consensus 3 ~~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~~~~~~~l~~~~W~~G~~~~~~g-------~~~-----~~~A 70 (300)
T PF05653_consen 3 TDFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAGSGGRSYLRRPLWWIGLLLMVLG-------EIL-----NFVA 70 (300)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhHHHhhHHHHHHHHHHhcc-------hHH-----HHHH
Confidence 356789999999999999999999997555432 01 1122221111100 000 0111
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccCC
Q 020761 233 DILSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAK 287 (321)
Q Consensus 233 ~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 287 (321)
.....+....-...+..+++.+++..+++|+++..++.|+.+++.|..+......
T Consensus 71 l~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~ 125 (300)
T PF05653_consen 71 LGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAP 125 (300)
T ss_pred HHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCC
Confidence 1112233333334457889999999999999999999999999999877665443
No 77
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.93 E-value=0.0075 Score=52.26 Aligned_cols=115 Identities=19% Similarity=0.175 Sum_probs=60.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHhhcccccccccchhhHH---------------
Q 020761 171 GDILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDIL--------------- 235 (321)
Q Consensus 171 G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--------------- 235 (321)
|.+.++.|+++++-..+=.||.- ..|.....++.+....+...+.....+.+.+.+.......+
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~-~gDg~~fQw~~~~~i~~~g~~v~~~~~~p~f~p~amlgG~lW~~gN~~~vpii~~i 79 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFD-TGDGFFFQWVMCSGIFLVGLVVNLILGFPPFYPWAMLGGALWATGNILVVPIIKTI 79 (254)
T ss_pred CchhHHHHHHHhcccceeeEecc-CCCcHHHHHHHHHHHHHHHHHHHHhcCCCcceeHHHhhhhhhhcCceeehhHhhhh
Confidence 56778899999998888888754 34666555555544444442222222222221111010111
Q ss_pred ---HhHHHHHHHHHHHHHHHHHHHHH-Hhccc-----chHHHHhHHHHHhhhhheeeccCCCC
Q 020761 236 ---SGATMLILSVLTSDMWAVILRIF-CYHQQ-----VNWTYYLAFAAVLIGLIIYSTTAKDL 289 (321)
Q Consensus 236 ---~~a~~~~~~~~~~pv~~~~~~~~-~~~e~-----~~~~~~~G~~li~~g~~l~~~~~~~~ 289 (321)
.+..+-+ ..+.+.+-..+-+ +|+++ -++..++|.+++++|..++..-|++.
T Consensus 80 GLglg~liW~---s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 80 GLGLGMLIWG---SVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hhHHHHHHHH---HHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 1111111 1234444444432 44432 34678999999999988887655443
No 78
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=96.93 E-value=0.015 Score=52.70 Aligned_cols=51 Identities=18% Similarity=0.267 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccCC
Q 020761 237 GATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAK 287 (321)
Q Consensus 237 ~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 287 (321)
+.....+......++++++++++++++.++.+++|+++.+.|+.+......
T Consensus 104 svtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~ 154 (334)
T PF06027_consen 104 SVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV 154 (334)
T ss_pred cHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence 333334444468999999999999999999999999999999998877654
No 79
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.85 E-value=0.0085 Score=43.71 Aligned_cols=54 Identities=15% Similarity=0.156 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhhcchhhHHHHh-hcCchHHHHHHHHHHhhcchhHHHHHHHHHH
Q 020761 93 DVQGNFLFNKAFQFTSISSVTLL-DCCAIPCAIVFTWVFLGTRYSVWQLFGASLC 146 (321)
Q Consensus 93 ~~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~ils~l~l~er~~~~~~~~~~l~ 146 (321)
......++..++++.|.+.+-.+ ..+..+.+.+.+.+++||++|..|++|+.+.
T Consensus 39 ~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 39 YGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 34447788899999999998655 5689999999999999999999999998763
No 80
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=96.76 E-value=0.047 Score=42.94 Aligned_cols=111 Identities=19% Similarity=0.227 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccCC-hhhHHHHHHHHHHHHHHHHHHhhccccc---ccccchhhH---H--------
Q 020761 171 GDILVIAGAIFFAMSYVGEEFLVKKID-RVEVVCMIGVYGLLVSVVQLSTLELKSL---ESVKWSTDI---L-------- 235 (321)
Q Consensus 171 G~~l~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~---~-------- 235 (321)
..++++.+.++.++....+.++.++.+ |.......+..+++...+.....+..+. +..+|.... +
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~ 81 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSN 81 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHH
Confidence 467889999999999999999988875 9999999999999988665555444222 222332211 1
Q ss_pred ------HhHHHHH-HHHHHHHHHHHHHHHH----HhcccchHHHHhHHHHHhhhhhe
Q 020761 236 ------SGATMLI-LSVLTSDMWAVILRIF----CYHQQVNWTYYLAFAAVLIGLII 281 (321)
Q Consensus 236 ------~~a~~~~-~~~~~~pv~~~~~~~~----~~~e~~~~~~~~G~~li~~g~~l 281 (321)
.++.... +...-+.+.+++++.+ .-++++++.+.+|..++++|+++
T Consensus 82 ~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 82 IILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 2222222 2233456666777764 33478999999999999999864
No 81
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=96.74 E-value=0.0027 Score=47.75 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchhhHHHHhh-cCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhh
Q 020761 85 WYLLLGFVDVQGNFLFNKAFQFTSISSVTLLD-CCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLM 153 (321)
Q Consensus 85 ~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~-~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~ 153 (321)
+|.+.=.++..+...|++.+...+.+.+.++. ++.=++|++.++++.+|..+++.++|+++.+.|+.++
T Consensus 43 ~y~ipf~lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 43 KYIIPFLLNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 35555556777799999999999999999885 8888999999988888888889999999999999765
No 82
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.62 E-value=0.083 Score=39.34 Aligned_cols=38 Identities=18% Similarity=0.190 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeecc
Q 020761 248 SDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTT 285 (321)
Q Consensus 248 ~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~ 285 (321)
..+.+.+.++++|+|++|+.++.|+.+++.|++..+..
T Consensus 66 G~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l~ 103 (105)
T PRK11431 66 GAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKLS 103 (105)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhcc
Confidence 55667889999999999999999999999999987643
No 83
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.57 E-value=0.009 Score=53.50 Aligned_cols=135 Identities=14% Similarity=0.150 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHh---cCCChhHHHHHHHHHHHHHHHH-HHhhhccc---------ccchhhHHHH
Q 020761 21 TLYLLLLGQLVSFSLALSSFTTAVITD---LGVDAPITQSVLCYLSLALAYG-GILLYRRQ---------RLQVSWYWYL 87 (321)
Q Consensus 21 ~~~~~~~~~~~a~~~~~~~~~~~~l~~---~~~~~p~~~~~~r~~~~~l~l~-~~~~~~~~---------~~~~~~~~~~ 87 (321)
.+.|....+...+....-+...+++.. +.+ ++..+..+.--++...++ |+.....+ +..-+.....
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~-~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESL-NSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILL 239 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc-CchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHH
Confidence 467766665555555555777777663 245 777777776666777777 66554321 1112223334
Q ss_pred HHHHHHHHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccc
Q 020761 88 LLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLS 156 (321)
Q Consensus 88 ~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~ 156 (321)
...++....|...|..+..+++.+.++.....-.++...++++++++.++.+.+|.++++.|+.+=...
T Consensus 240 ~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~ 308 (316)
T KOG1441|consen 240 LNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRA 308 (316)
T ss_pred HHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHH
Confidence 444555666889999999999999999999999999999999999999999999999999999875543
No 84
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=96.57 E-value=0.0047 Score=46.81 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccCC
Q 020761 243 LSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAK 287 (321)
Q Consensus 243 ~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 287 (321)
....++|+++.++++++++|+++..++.|.+++++|+++..+.+.
T Consensus 65 ~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 65 AIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 445569999999999999999999999999999999998886553
No 85
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.53 E-value=0.1 Score=39.15 Aligned_cols=101 Identities=8% Similarity=0.054 Sum_probs=57.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHhHHHHHHHHHHHH
Q 020761 170 LGDILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDILSGATMLILSVLTSD 249 (321)
Q Consensus 170 ~G~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~p 249 (321)
...++.+++.++--......|+..+-.++.........++..+..+-.. ....|. ...+.+-.-...
T Consensus 7 ~~~~~L~~Ai~~Ev~~t~~Lk~s~gf~~~~~~~~~~~~~~~sf~~Ls~a---l~~lpv----------gvAYAvW~GiG~ 73 (109)
T PRK10650 7 IHAAWLALAIVLEIVANIFLKFSDGFRRKIYGILSLAAVLAAFSALSQA---VKGIDL----------SVAYALWGGFGI 73 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHH---HhhCch----------HHHHHHHHHHHH
Confidence 4566677778888888888776533223332222222111111101111 112221 111111111255
Q ss_pred HHHHHHHHHHhcccchHHHHhHHHHHhhhhheee
Q 020761 250 MWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYS 283 (321)
Q Consensus 250 v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 283 (321)
+.+.+.++++|+|++++.++.|+.+|+.|++..+
T Consensus 74 v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 74 AATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 6678889999999999999999999999998764
No 86
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.53 E-value=0.027 Score=48.06 Aligned_cols=67 Identities=15% Similarity=0.257 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhh
Q 020761 86 YLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGL 152 (321)
Q Consensus 86 ~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l 152 (321)
.....+.+.....+..+.++|.+....++...+.++++.+++.++++|+++..++.|+.+.+.|+.+
T Consensus 155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 3344455555578889999999999999999999999999999999999999999999999988753
No 87
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.32 E-value=0.15 Score=37.83 Aligned_cols=39 Identities=13% Similarity=0.238 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccC
Q 020761 248 SDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTA 286 (321)
Q Consensus 248 ~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 286 (321)
-.+.+.+.++++|+|+.+..+++|..++++|++..+...
T Consensus 67 G~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~s 105 (106)
T COG2076 67 GIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLGS 105 (106)
T ss_pred HHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhcC
Confidence 566688899999999999999999999999998877543
No 88
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=96.19 E-value=0.91 Score=40.90 Aligned_cols=166 Identities=13% Similarity=0.136 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhc----------ccccchhhHHHHHHHH
Q 020761 22 LYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYR----------RQRLQVSWYWYLLLGF 91 (321)
Q Consensus 22 ~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~----------~~~~~~~~~~~~~~g~ 91 (321)
..|++.-.+.+++......+.+|...=. .+..+.-..+.+-+++|+..-. +...........+.|+
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkvk~Ws----WEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~ 81 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKVKGWS----WESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV 81 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhcCCcc----HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence 4555555555555555555555554322 3333433444444444544311 1222334555677888
Q ss_pred HHHHHHHHHHHhhhcchhhHHH-HhhcCchHHHHHHHHHHhh-------cchhHHHHHHHHHHHHhhhhhcccccccc--
Q 020761 92 VDVQGNFLFNKAFQFTSISSVT-LLDCCAIPCAIVFTWVFLG-------TRYSVWQLFGASLCVLGLGLMLLSDAEMA-- 161 (321)
Q Consensus 92 ~~~~~~~~~~~al~~~~~~~~~-~i~~~~pi~~~ils~l~l~-------er~~~~~~~~~~l~~~Gv~l~~~~~~~~~-- 161 (321)
+...+.+.|-.+.+|...+..+ +...+...+-.++-.++.+ .+-....++|++++++|+.++...+...+
T Consensus 82 lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~ 161 (344)
T PF06379_consen 82 LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKE 161 (344)
T ss_pred HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhh
Confidence 8888888888999999888754 4445555555555445433 22234678899999999999987654321
Q ss_pred ---CCCCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 020761 162 ---GGGGSRPLLGDILVIAGAIFFAMSYVGEEF 191 (321)
Q Consensus 162 ---~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~ 191 (321)
...+.+...|.+.++++.++.|..+.-.+.
T Consensus 162 ~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~a 194 (344)
T PF06379_consen 162 LGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDA 194 (344)
T ss_pred hccchhhhhhhhhHHHHHHHHHHHHHHHHHHHc
Confidence 112233459999999999999988776654
No 89
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.12 E-value=0.056 Score=45.70 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=68.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhc
Q 020761 78 RLQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLML 154 (321)
Q Consensus 78 ~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~ 154 (321)
+.+.-|+...++++++..++++.|....+-++-.-+++..+--.|+++.|+++++..++.+||+|.++.+.|...=.
T Consensus 236 RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 236 RHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred hccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 34556677888999999999999999999998899999999999999999999999999999999999998876543
No 90
>PRK13499 rhamnose-proton symporter; Provisional
Probab=95.88 E-value=0.27 Score=44.74 Aligned_cols=69 Identities=13% Similarity=0.134 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcchhhHHHH---hh-cCchHHHHHHHHHHhhcchh------HHHHHHHHHHHHhhhhhccc
Q 020761 87 LLLGFVDVQGNFLFNKAFQFTSISSVTL---LD-CCAIPCAIVFTWVFLGTRYS------VWQLFGASLCVLGLGLMLLS 156 (321)
Q Consensus 87 ~~~g~~~~~~~~~~~~al~~~~~~~~~~---i~-~~~pi~~~ils~l~l~er~~------~~~~~~~~l~~~Gv~l~~~~ 156 (321)
.+-|++....+.++..+-+..+.+.+.+ +. ++..++..+.+. ++||+=+ ..-++++++.++|..++...
T Consensus 264 ~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 264 ALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 4445555666777888777775544433 55 667788888887 5998877 45577888888888887663
No 91
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=95.82 E-value=0.0011 Score=56.16 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=62.3
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHH----HHHHHHhhhh
Q 020761 77 QRLQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFG----ASLCVLGLGL 152 (321)
Q Consensus 77 ~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~----~~l~~~Gv~l 152 (321)
++..++.+.-++.|+....+|+++++|-+....+++-.+.++..+...+-+.+++|||=+++++.. +++.++|..+
T Consensus 203 ~~~~K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~ 282 (288)
T COG4975 203 KRFNKYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAIL 282 (288)
T ss_pred cchHHHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhh
Confidence 333444556788999999999999999999999888889999999999999999999999998764 4444555554
Q ss_pred h
Q 020761 153 M 153 (321)
Q Consensus 153 ~ 153 (321)
+
T Consensus 283 l 283 (288)
T COG4975 283 L 283 (288)
T ss_pred h
Confidence 4
No 92
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.77 E-value=0.38 Score=38.13 Aligned_cols=128 Identities=14% Similarity=0.142 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhcccc--c---chhhHHHHHHHHHHHHHHHH
Q 020761 25 LLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQR--L---QVSWYWYLLLGFVDVQGNFL 99 (321)
Q Consensus 25 ~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~--~---~~~~~~~~~~g~~~~~~~~~ 99 (321)
++.+++.-.+.-..+-+..++.+..- +|+.-++..+..+..++..+.+.+.++ . ++..++...-|.++...-..
T Consensus 7 ll~~i~aG~~l~~Q~~iN~qL~~~~~-spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~vt~ 85 (150)
T COG3238 7 LLFAILAGALLPLQAAINGRLARYLG-SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFVTS 85 (150)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhhhh
Confidence 44444555555556666677776444 899999999999888877766543221 1 22223355555555554333
Q ss_pred HHHhhhcchhh-HHHHhhcCchHHHHHHHHHHh----hcchhHHHHHHHHHHHHhhhhh
Q 020761 100 FNKAFQFTSIS-SVTLLDCCAIPCAIVFTWVFL----GTRYSVWQLFGASLCVLGLGLM 153 (321)
Q Consensus 100 ~~~al~~~~~~-~~~~i~~~~pi~~~ils~l~l----~er~~~~~~~~~~l~~~Gv~l~ 153 (321)
-........++ ....+..-.-+..+++..+=+ +++++..++.|+++.++|++++
T Consensus 86 s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 86 SILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred hHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 33444444444 444556666667777666543 3899999999999999995554
No 93
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.59 E-value=0.42 Score=37.86 Aligned_cols=118 Identities=14% Similarity=0.166 Sum_probs=74.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhccCC-hhhHHHHHHHHHHHHHHHHHHhhcccccc----cccchhhHH--------
Q 020761 169 LLGDILVIAGAIFFAMSYVGEEFLVKKID-RVEVVCMIGVYGLLVSVVQLSTLELKSLE----SVKWSTDIL-------- 235 (321)
Q Consensus 169 ~~G~~l~l~aa~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~-------- 235 (321)
.+..++++++.++..+..-.+.++.+..+ |.......+..|.+++.+.....+..... ..+|.....
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~v 83 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFV 83 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhh
Confidence 46788899999999999999999887764 77778888888887774444443322111 123322211
Q ss_pred ---------HhHH-HHHHHHHHHHHHHHHHHHHHhc----ccchHHHHhHHHHHhhhhheeeccC
Q 020761 236 ---------SGAT-MLILSVLTSDMWAVILRIFCYH----QQVNWTYYLAFAAVLIGLIIYSTTA 286 (321)
Q Consensus 236 ---------~~a~-~~~~~~~~~pv~~~~~~~~~~~----e~~~~~~~~G~~li~~g~~l~~~~~ 286 (321)
.++. ...+...-+.+.+++.+.+=++ .+++...++|.+++++|+++..+.+
T Consensus 84 t~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~~~ 148 (150)
T COG3238 84 TSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARRFG 148 (150)
T ss_pred hhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcccc
Confidence 2222 2222222345556666654333 5799999999999999976665443
No 94
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=95.52 E-value=0.0074 Score=51.83 Aligned_cols=81 Identities=17% Similarity=0.354 Sum_probs=71.3
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhc
Q 020761 75 RRQRLQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLML 154 (321)
Q Consensus 75 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~ 154 (321)
..+.-+++|+.+..+|+.+..++.+.-.++|.=-++-+++..++..++..++-.+++++-+++..|.|+++.+...+...
T Consensus 245 ~lP~cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a 324 (346)
T KOG4510|consen 245 QLPHCGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVA 324 (346)
T ss_pred ecCccccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHH
Confidence 34556777777889999999999999999999999999999999999999999999999999999999888766666555
Q ss_pred c
Q 020761 155 L 155 (321)
Q Consensus 155 ~ 155 (321)
.
T Consensus 325 ~ 325 (346)
T KOG4510|consen 325 L 325 (346)
T ss_pred H
Confidence 4
No 95
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.14 E-value=0.41 Score=34.78 Aligned_cols=28 Identities=7% Similarity=0.313 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHhcccchHHHHhHHHHH
Q 020761 248 SDMWAVILRIFCYHQQVNWTYYLAFAAV 275 (321)
Q Consensus 248 ~pv~~~~~~~~~~~e~~~~~~~~G~~li 275 (321)
..+...+.+.+++||++|+.++.|+.+|
T Consensus 66 g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 66 GIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 5677888999999999999999999876
No 96
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.95 E-value=0.19 Score=44.20 Aligned_cols=136 Identities=14% Similarity=0.048 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhcc---------cccchhhHHHHHHHH
Q 020761 21 TLYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRR---------QRLQVSWYWYLLLGF 91 (321)
Q Consensus 21 ~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~---------~~~~~~~~~~~~~g~ 91 (321)
...|+.+...--+.=..++..=.++..+.-..+..+.+.--+..++.-........ +..+.-++..++.+.
T Consensus 170 s~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~ 249 (327)
T KOG1581|consen 170 SPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST 249 (327)
T ss_pred chHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH
Confidence 34555543222122223343334444332237777777666666665554443221 224455677889999
Q ss_pred HHHHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccc
Q 020761 92 VDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLS 156 (321)
Q Consensus 92 ~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~ 156 (321)
++..++.+.++.++.-++-.-+.+..+--+++++++.+.++.++++.||.|+.+.+.|+.+=.+.
T Consensus 250 ~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~ 314 (327)
T KOG1581|consen 250 CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILL 314 (327)
T ss_pred hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHH
Confidence 99999988888887766666677788889999999999999999999999999999998876653
No 97
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=94.60 E-value=0.12 Score=44.91 Aligned_cols=54 Identities=6% Similarity=0.234 Sum_probs=47.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccCCCC
Q 020761 236 SGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDL 289 (321)
Q Consensus 236 ~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~ 289 (321)
.++....+...+..+++.++++++++.+++..||.+..+.+.|+.+........
T Consensus 41 ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 41 LDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred CCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 556677777778999999999999999999999999999999999988776654
No 98
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=93.28 E-value=1.3 Score=40.41 Aligned_cols=137 Identities=20% Similarity=0.189 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHh-cC--CChhHHHHHHHHHHHHHHHHHHhh----hcccc----cchhhHHHHHH
Q 020761 21 TLYLLLLGQLVSFSLALSSFTTAVITD-LG--VDAPITQSVLCYLSLALAYGGILL----YRRQR----LQVSWYWYLLL 89 (321)
Q Consensus 21 ~~~~~~~~~~~a~~~~~~~~~~~~l~~-~~--~~~p~~~~~~r~~~~~l~l~~~~~----~~~~~----~~~~~~~~~~~ 89 (321)
...|-+++++.|++-..-.+..++-.. +| .+-+..+. +--++..++++|..+ ..+++ ...+....++.
T Consensus 245 ~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffG-fvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~ 323 (416)
T KOG2765|consen 245 PLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFG-FVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN 323 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHH-HHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence 356777776666665555555555443 32 32333333 223344444444332 22221 12233344566
Q ss_pred HHHHHHH-HHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccccc
Q 020761 90 GFVDVQG-NFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDA 158 (321)
Q Consensus 90 g~~~~~~-~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~ 158 (321)
+.++... .+++..|.-.+++-.+++-.+++.+..++.-.++-+.++++..++|.+..++|-+++...+.
T Consensus 324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 7776665 99999999999999999999999999999999988999999999999999999999988554
No 99
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=93.26 E-value=1.7 Score=37.83 Aligned_cols=164 Identities=13% Similarity=0.124 Sum_probs=98.1
Q ss_pred HHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhcccccchhhHHHHHHHHHHHHHHHHHHHhhhcch
Q 020761 29 QLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRRQRLQVSWYWYLLLGFVDVQGNFLFNKAFQFTS 108 (321)
Q Consensus 29 ~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~ 108 (321)
.++|.+..|+++.-.|-...+ +++..-++......+.-+.....+ ..++-+.+.++-|.+...+|.+-...++...
T Consensus 5 ~~va~~~fGs~~vPvK~~~~g--Dg~~fQw~~~~~i~~~g~~v~~~~--~~p~f~p~amlgG~lW~~gN~~~vpii~~iG 80 (254)
T PF07857_consen 5 CIVAVLFFGSNFVPVKKFDTG--DGFFFQWVMCSGIFLVGLVVNLIL--GFPPFYPWAMLGGALWATGNILVVPIIKTIG 80 (254)
T ss_pred HHHHHHHhcccceeeEeccCC--CcHHHHHHHHHHHHHHHHHHHHhc--CCCcceeHHHhhhhhhhcCceeehhHhhhhh
Confidence 356666777765555443322 455544444332222222222222 2222333456677888888999999999999
Q ss_pred hhHHHHhhcCchH-HHHHHHHH-Hhhc---c--hhHHHHHHHHHHHHhhhhhccccccc---------------------
Q 020761 109 ISSVTLLDCCAIP-CAIVFTWV-FLGT---R--YSVWQLFGASLCVLGLGLMLLSDAEM--------------------- 160 (321)
Q Consensus 109 ~~~~~~i~~~~pi-~~~ils~l-~l~e---r--~~~~~~~~~~l~~~Gv~l~~~~~~~~--------------------- 160 (321)
.+....+-++.-. .--..+++ ++++ . -.+..++|++++++|..+...-+...
T Consensus 81 Lglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~~~~~~~~~~~ 160 (254)
T PF07857_consen 81 LGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETPLSIEDVIEIE 160 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCCccccccccccccccccccc
Confidence 9999988766433 33333333 3332 2 23557889999999988776533210
Q ss_pred cC---C-CC---------CcchhhhHHHHHHHHHHHHHHHHHHHhhccC
Q 020761 161 AG---G-GG---------SRPLLGDILVIAGAIFFAMSYVGEEFLVKKI 196 (321)
Q Consensus 161 ~~---~-~~---------~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~ 196 (321)
+. + +. .++..|..+++.+.++|+...+=.+++.++.
T Consensus 161 ~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~ 209 (254)
T PF07857_consen 161 DDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDHP 209 (254)
T ss_pred cccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhCc
Confidence 00 0 00 1367899999999999999887777776654
No 100
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.05 E-value=0.021 Score=50.45 Aligned_cols=113 Identities=19% Similarity=0.252 Sum_probs=73.4
Q ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHhhccCCh---------h----hHHHHHHHHHHHHHHHHHHhhcccccccccchh
Q 020761 166 SRPLLGDILVIAGAIFFAMSYVGEEFLVKKIDR---------V----EVVCMIGVYGLLVSVVQLSTLELKSLESVKWST 232 (321)
Q Consensus 166 ~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~~~---------~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 232 (321)
.+...|.++++.+.++.+...++.||..++... . +.++|...+...+. |-.++..
T Consensus 17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~ra~~gg~~yl~~~~Ww~G~ltm~vG-------ei~NFaA----- 84 (335)
T KOG2922|consen 17 SDNIIGLVLAISSSIFIGSSFILKKKGLKRAGASGLRAGEGGYGYLKEPLWWAGMLTMIVG-------EIANFAA----- 84 (335)
T ss_pred cCceeeeeehhhccEEEeeehhhhHHHHHHHhhhcccccCCCcchhhhHHHHHHHHHHHHH-------hHhhHHH-----
Confidence 456789999999999999999999987665422 1 22333322222211 1111110
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccCCCCC
Q 020761 233 DILSGATMLILSVLTSDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAKDLL 290 (321)
Q Consensus 233 ~~~~~a~~~~~~~~~~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~~~~ 290 (321)
.....++...-...++.+.+.+++..+++|++++...+|+.+.++|..+......++.
T Consensus 85 YaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~ 142 (335)
T KOG2922|consen 85 YAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQ 142 (335)
T ss_pred HhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccc
Confidence 0002223333334457888999999999999999999999999999877766555443
No 101
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=92.50 E-value=0.35 Score=36.40 Aligned_cols=35 Identities=11% Similarity=0.251 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcccchHHHHhHHHHHhhhhhee
Q 020761 248 SDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIY 282 (321)
Q Consensus 248 ~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~ 282 (321)
.-+++++.++++.+|..+...++|+.+++.|+.+.
T Consensus 78 ~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 78 AFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 67789999999989999999999999999998763
No 102
>PRK02237 hypothetical protein; Provisional
Probab=90.57 E-value=4.8 Score=29.83 Aligned_cols=50 Identities=20% Similarity=0.620 Sum_probs=40.6
Q ss_pred chhhHH-HHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccc
Q 020761 107 TSISSV-TLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLS 156 (321)
Q Consensus 107 ~~~~~~-~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~ 156 (321)
.+.+.+ +.-.....+...+..+.+-|+|++...++|..++++|+.++.+.
T Consensus 56 ~~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 56 AAFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 334443 44456677888899999999999999999999999999998764
No 103
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=89.07 E-value=3.9 Score=30.21 Aligned_cols=54 Identities=22% Similarity=0.594 Sum_probs=43.7
Q ss_pred hhcchhhHH-HHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcccc
Q 020761 104 FQFTSISSV-TLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSD 157 (321)
Q Consensus 104 l~~~~~~~~-~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~ 157 (321)
+|-.+.+.+ +.-.....+...+..+.+-|+|++...++|..++++|+.++.+..
T Consensus 51 l~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~P 105 (107)
T PF02694_consen 51 LQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAP 105 (107)
T ss_pred cCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecC
Confidence 444444443 445567888899999999999999999999999999999998743
No 104
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=88.75 E-value=16 Score=32.16 Aligned_cols=115 Identities=15% Similarity=0.084 Sum_probs=62.8
Q ss_pred cchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcccccc-c--cCCCCCcchhhhHHHHHHHHHH
Q 020761 106 FTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAE-M--AGGGGSRPLLGDILVIAGAIFF 182 (321)
Q Consensus 106 ~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~-~--~~~~~~~~~~G~~l~l~aa~~~ 182 (321)
|-.....+++......+++++.+-.-.-|.|.+---.+..+..|+.+....+.. + .....+...+|+.+.+.....-
T Consensus 143 ~pGIv~qAvl~T~~vf~~ml~lYk~g~IrvT~kf~~iv~~a~~gi~~~~Lv~~vl~lf~~~l~~~gplgI~~slv~v~iA 222 (274)
T PF12811_consen 143 YPGIVFQAVLGTFGVFAVMLALYKTGIIRVTPKFRRIVMIATFGIALFYLVNLVLSLFVGSLRDGGPLGIGFSLVVVGIA 222 (274)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhCCeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHH
Confidence 344445556666667777777766555565554444444444454443332211 0 0012233457777777766666
Q ss_pred HHHHHHHHHhhccC---ChhhHHHHHHHHHHHHHHHHHHhhc
Q 020761 183 AMSYVGEEFLVKKI---DRVEVVCMIGVYGLLVSVVQLSTLE 221 (321)
Q Consensus 183 a~~~v~~k~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~ 221 (321)
++..++.=...++. ...+...|...+|..+. +.++..|
T Consensus 223 a~sLllDFd~Ie~~v~~gaPk~~eW~~AfGL~vT-LVWLYlE 263 (274)
T PF12811_consen 223 ALSLLLDFDFIEQGVRQGAPKKMEWYAAFGLLVT-LVWLYLE 263 (274)
T ss_pred HHHHHhhHHHHHHHHHcCCChhhHHHHHHHHHHH-HHHHHHH
Confidence 66655544333332 45567778888888888 6665544
No 105
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=88.56 E-value=3.5 Score=30.34 Aligned_cols=70 Identities=20% Similarity=0.245 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcchhhHHHHhh-cCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhc
Q 020761 85 WYLLLGFVDVQGNFLFNKAFQFTSISSVTLLD-CCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLML 154 (321)
Q Consensus 85 ~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~-~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~ 154 (321)
.|.+.-.++--+..+||.-++..+.+.+..+. ++.-.|+.+++..+--|-...+-++|..+.+.|+.++.
T Consensus 54 ~Y~iPFllNqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 54 EYLIPFLLNQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 35555555666688999999999999988775 55778899999875434444556778888888887764
No 106
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=86.73 E-value=1.1 Score=33.11 Aligned_cols=40 Identities=10% Similarity=0.068 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccCC
Q 020761 248 SDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAK 287 (321)
Q Consensus 248 ~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 287 (321)
-.+.++++++.+-+++|+...++|..++++|+.+..+.++
T Consensus 67 fI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~PR 106 (107)
T PF02694_consen 67 FIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFAPR 106 (107)
T ss_pred HHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEecCC
Confidence 5677999999999999999999999999999988776543
No 107
>PRK02237 hypothetical protein; Provisional
Probab=86.12 E-value=1.2 Score=32.87 Aligned_cols=39 Identities=8% Similarity=0.022 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccC
Q 020761 248 SDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTA 286 (321)
Q Consensus 248 ~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 286 (321)
-.+.++++.+.+-+++|+...++|..++++|+.+....+
T Consensus 69 yI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~p 107 (109)
T PRK02237 69 YVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYAP 107 (109)
T ss_pred HHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheecC
Confidence 567799999999999999999999999999987765544
No 108
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.94 E-value=0.78 Score=39.93 Aligned_cols=137 Identities=14% Similarity=0.127 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhcc--------ccc--chhhHHHHHHH
Q 020761 21 TLYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRR--------QRL--QVSWYWYLLLG 90 (321)
Q Consensus 21 ~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~--------~~~--~~~~~~~~~~g 90 (321)
.+.|.++|++.++....-+.-.++...+--+.-.-++++.-..+.++++|...... ++. ..-|..+.+.|
T Consensus 183 s~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~~l~a~~Fw~~mtLsg 262 (347)
T KOG1442|consen 183 SWIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFPHLPAIKFWILMTLSG 262 (347)
T ss_pred chhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcccchHHHHHHHHHHHH
Confidence 37889999888887777776666554433335567888888888888888776331 122 11233333445
Q ss_pred HHHHHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcccc
Q 020761 91 FVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSD 157 (321)
Q Consensus 91 ~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~ 157 (321)
++|+..++...+=++.+++-+..+=.......=.+++..+++|--+...|-+-++.+.|-..-++.+
T Consensus 263 lfgF~mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk 329 (347)
T KOG1442|consen 263 LFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVK 329 (347)
T ss_pred HHHHHhhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHH
Confidence 5555556555556667777665555555566667888899999999888888888887777665543
No 109
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=85.04 E-value=6.7 Score=33.26 Aligned_cols=106 Identities=12% Similarity=0.067 Sum_probs=78.4
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHhhhc--ccc------cch-hhHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHhhcCc
Q 020761 49 GVDAPITQSVLCYLSLALAYGGILLYR--RQR------LQV-SWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCA 119 (321)
Q Consensus 49 ~~~~p~~~~~~r~~~~~l~l~~~~~~~--~~~------~~~-~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~ 119 (321)
++ .-+.-.++.-+++..+++.+.+.. +.+ .+. ...+..+.|.+.++..++--+.+.-++....+++..+.
T Consensus 182 Nf-~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALN 260 (309)
T COG5070 182 NF-KDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALN 260 (309)
T ss_pred cc-chhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhh
Confidence 45 556677788888877776654422 211 122 23456677777777788888899999999999999999
Q ss_pred hHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcc
Q 020761 120 IPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLL 155 (321)
Q Consensus 120 pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~ 155 (321)
-.-..+-+.++++|+.+...+.++.+++...++-..
T Consensus 261 Klp~alaGlvffdap~nf~si~sillGflsg~iYav 296 (309)
T COG5070 261 KLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAV 296 (309)
T ss_pred hChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 888899999999999999999998888665555444
No 110
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=80.57 E-value=18 Score=31.70 Aligned_cols=73 Identities=12% Similarity=0.234 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccccc
Q 020761 86 YLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDA 158 (321)
Q Consensus 86 ~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~ 158 (321)
.++.+..+..+..+...=++.-.+..+..+...--..|.++|++++.++++.....+..+.+.|+.+-.+++.
T Consensus 263 ~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~ 335 (367)
T KOG1582|consen 263 AFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKR 335 (367)
T ss_pred HHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCC
Confidence 3444555555543333444556677788888888999999999999999999999999999999999998764
No 111
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=78.97 E-value=8.9 Score=28.18 Aligned_cols=45 Identities=22% Similarity=0.564 Sum_probs=38.7
Q ss_pred HHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcccc
Q 020761 113 TLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSD 157 (321)
Q Consensus 113 ~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~ 157 (321)
+.-.....+...+..++.-|.|+++..+.|..++++|+.++..++
T Consensus 62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~p 106 (109)
T COG1742 62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGP 106 (109)
T ss_pred HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCC
Confidence 444566788888999999999999999999999999999988744
No 112
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.68 E-value=5.5 Score=35.53 Aligned_cols=76 Identities=11% Similarity=0.045 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcccc
Q 020761 82 SWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSD 157 (321)
Q Consensus 82 ~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~ 157 (321)
.+....+.++++.+.+++.+...+..|+...++.....-..+.+...++.++++++...+|+.+++.|-++=.+..
T Consensus 227 ~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~ 302 (314)
T KOG1444|consen 227 VLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYAT 302 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhh
Confidence 3455667777888889999999999999999888877777888888888889999999999999999888766644
No 113
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=75.75 E-value=48 Score=31.45 Aligned_cols=33 Identities=24% Similarity=0.248 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccc
Q 020761 122 CAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLS 156 (321)
Q Consensus 122 ~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~ 156 (321)
+..+++.++.+-|.. .+..-+.+-+|+.+++..
T Consensus 6 ~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~ 38 (433)
T PRK09412 6 LIIVLLAIFLGARLG--GIGIGFAGGLGVLILTFI 38 (433)
T ss_pred HHHHHHHHHHhHhhh--HHHHHHHHHHHHHHHHHh
Confidence 456778888887773 222233345566666653
No 114
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=75.62 E-value=10 Score=35.57 Aligned_cols=39 Identities=18% Similarity=0.371 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhc-ccchHHHHhHHHHHhhhhheeeccCC
Q 020761 248 SDMWAVILRIFCYH-QQVNWTYYLAFAAVLIGLIIYSTTAK 287 (321)
Q Consensus 248 ~pv~~~~~~~~~~~-e~~~~~~~~G~~li~~g~~l~~~~~~ 287 (321)
.|+++.+ +++.++ ..-......|++.+++|++++.+.+.
T Consensus 169 ~~~~~~l-a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd 208 (448)
T COG2271 169 APLVALL-AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRD 208 (448)
T ss_pred HHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4554444 555555 33444567778888889888776554
No 115
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=74.36 E-value=33 Score=25.42 Aligned_cols=34 Identities=18% Similarity=0.398 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcccchHHHHhHHHHHhhhhheee
Q 020761 250 MWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYS 283 (321)
Q Consensus 250 v~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 283 (321)
.+=..++.++++|++++....|.++++.+++...
T Consensus 74 ~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF 107 (108)
T PF04342_consen 74 VVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFIF 107 (108)
T ss_pred heeHHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence 3345667889999999999999999998887653
No 116
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=74.04 E-value=45 Score=28.00 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=16.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhhhcchhh
Q 020761 78 RLQVSWYWYLLLGFVDVQGNFLFNKAFQFTSIS 110 (321)
Q Consensus 78 ~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~ 110 (321)
..|..++..++.+.......+..+...+..|+.
T Consensus 141 ~~r~~~~k~~~~~~~~~~~w~~~~~~~~~lp~~ 173 (206)
T PF06570_consen 141 KKRPSWWKYILISVLAMVLWIVIFVLTSFLPPV 173 (206)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 344455555555555555544444444445543
No 117
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=72.31 E-value=4.6 Score=31.52 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=16.0
Q ss_pred HHHHHHHHhcccchHHHHhHHHHHhhhhheee
Q 020761 252 AVILRIFCYHQQVNWTYYLAFAAVLIGLIIYS 283 (321)
Q Consensus 252 ~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 283 (321)
-++.+.+.+++ -....++|..+++.|++...
T Consensus 74 yif~G~l~~~~-~~~~~i~g~~~~~~G~~~i~ 104 (136)
T PF08507_consen 74 YIFLGTLCLGQ-SILSIIIGLLLFLVGVIYII 104 (136)
T ss_pred HHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHH
Confidence 34444444454 22334666666666765443
No 118
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=72.27 E-value=7.8 Score=28.47 Aligned_cols=40 Identities=8% Similarity=-0.040 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccCC
Q 020761 248 SDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAK 287 (321)
Q Consensus 248 ~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 287 (321)
-.+.++++.+.+-+.+|+...++|..+.++|+.+....++
T Consensus 68 yI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~pR 107 (109)
T COG1742 68 YIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFGPR 107 (109)
T ss_pred HHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeCCC
Confidence 5667899999999999999999999999999887776543
No 119
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=71.89 E-value=27 Score=31.67 Aligned_cols=26 Identities=23% Similarity=0.175 Sum_probs=22.4
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHh
Q 020761 167 RPLLGDILVIAGAIFFAMSYVGEEFL 192 (321)
Q Consensus 167 ~~~~G~~l~l~aa~~~a~~~v~~k~~ 192 (321)
.-..|+++...++++.+.+.+=.||.
T Consensus 4 ~ii~Gii~h~iGg~~~~sfy~P~kkv 29 (344)
T PF06379_consen 4 AIILGIIFHAIGGFASGSFYVPFKKV 29 (344)
T ss_pred hHHHHHHHHHHHHHHhhhhccchhhc
Confidence 34689999999999999998888885
No 120
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=71.44 E-value=88 Score=29.10 Aligned_cols=81 Identities=20% Similarity=0.153 Sum_probs=39.4
Q ss_pred hhcchhHH---HHHHHHHHHHhhhhhccccccccCCCCCcchhhhHHH--HHHHHHHHHHHHHHHHhhccCChhhHHHHH
Q 020761 131 LGTRYSVW---QLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILV--IAGAIFFAMSYVGEEFLVKKIDRVEVVCMI 205 (321)
Q Consensus 131 l~er~~~~---~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~--l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~ 205 (321)
+.||..++ +.-+.+++.+...++..-+..++ ..+.+..+.+.- +=.++..=+...=.||..|...+.-..+..
T Consensus 13 le~~~~~~~f~~l~~~vl~~~~~~~lsnlgli~~--p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~ 90 (378)
T PF05684_consen 13 LEQKTKWGFFKYLPGAVLCYLLGMLLSNLGLIDS--PASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLI 90 (378)
T ss_pred HhcchhhhhHhhcCHHHHHHHHHHHHHHCCCcCC--CCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHH
Confidence 45677776 44466666665555554333211 112223333222 222333334444556666655555555666
Q ss_pred HHHHHHHH
Q 020761 206 GVYGLLVS 213 (321)
Q Consensus 206 ~~~~~~~~ 213 (321)
..++.++.
T Consensus 91 ~~~g~viG 98 (378)
T PF05684_consen 91 GAVGTVIG 98 (378)
T ss_pred HHHHHHHH
Confidence 66666655
No 121
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=71.24 E-value=5 Score=29.59 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHhhhhh
Q 020761 122 CAIVFTWVFLGTRYSVWQLFGASLCVLGLGLM 153 (321)
Q Consensus 122 ~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~ 153 (321)
.-+.++.+++||++++.+..|.++.+.++..+
T Consensus 75 vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 75 VFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred eeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 34567788999999999999999887776554
No 122
>TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein. These proteins are members of th C4-Dicarboxylate Uptake (Dcu) Family (TC 2.A.13). Most proteins in this family have 12 GES predicted transmembrane regions; however one member has 10 experimentally determined transmembrane regions with both the N- and C-termini localized to the periplasm. The two Escherichia coli proteins, DcuA and DcuB, transport aspartate, malate, fumarate and succinate, and function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively.
Probab=68.64 E-value=1e+02 Score=29.25 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=16.8
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcc
Q 020761 123 AIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLL 155 (321)
Q Consensus 123 ~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~ 155 (321)
..+++.++.+-|..- +.--+.+-+|+.+++.
T Consensus 3 ~~~~~~~~~g~r~gg--~~~g~~g~~g~~~~~~ 33 (430)
T TIGR00770 3 IIVLLCIFLGARLGG--IGLGYAGGLGVLILCF 33 (430)
T ss_pred ehHHHHHHHHHhhhh--HHHHHHHHHHHHHHHH
Confidence 456777888877732 1112223446666655
No 123
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.24 E-value=12 Score=27.26 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhcccchHHHHhHHHHHhhhhheee
Q 020761 248 SDMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYS 283 (321)
Q Consensus 248 ~pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~ 283 (321)
+..+=+.+|.+.++|++.+..+.|.++++.|+.+..
T Consensus 79 tL~iFv~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 79 TLAIFVPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 344456788999999999999999999999987654
No 124
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.23 E-value=9.3 Score=27.73 Aligned_cols=32 Identities=13% Similarity=0.134 Sum_probs=27.4
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHhhhhhc
Q 020761 123 AIVFTWVFLGTRYSVWQLFGASLCVLGLGLML 154 (321)
Q Consensus 123 ~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~ 154 (321)
-..+|.+.+||.+++..+.+..+...|+.++.
T Consensus 83 Fv~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 83 FVPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 35678899999999999999998888887764
No 125
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=65.81 E-value=46 Score=29.38 Aligned_cols=48 Identities=21% Similarity=0.375 Sum_probs=40.8
Q ss_pred hHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcccc
Q 020761 110 SSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSD 157 (321)
Q Consensus 110 ~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~ 157 (321)
-+++++..+--.+..++|.+.++..+++.+|+|..+.+.|.++-+...
T Consensus 269 LTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~~~ 316 (330)
T KOG1583|consen 269 LTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFANVW 316 (330)
T ss_pred eEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777788999999999999999999999999999999876543
No 126
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=64.79 E-value=1.1e+02 Score=27.59 Aligned_cols=50 Identities=18% Similarity=0.406 Sum_probs=41.4
Q ss_pred hhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhh
Q 020761 104 FQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLM 153 (321)
Q Consensus 104 l~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~ 153 (321)
+..++.-..++..-..=+.+.+++..+++++++-.-|.|..++..|+.+=
T Consensus 264 l~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 264 LSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred eeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 34555555566666677889999999999999999999999999999875
No 127
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=62.23 E-value=89 Score=25.79 Aligned_cols=103 Identities=15% Similarity=0.054 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhc-cc--ccchhhHHHHHHHHHHHHHHHHH
Q 020761 24 LLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYR-RQ--RLQVSWYWYLLLGFVDVQGNFLF 100 (321)
Q Consensus 24 ~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~-~~--~~~~~~~~~~~~g~~~~~~~~~~ 100 (321)
++++.-+.+++...++++.++....|. -...++..--.++..++ -...++ +. ..|..++++++..........+.
T Consensus 101 sLl~lg~~aLlsgitaff~~nA~~~Gl-Itlll~a~vgGfamy~m-y~y~yr~~ad~sqr~~~~K~~lv~~~sm~lWi~v 178 (226)
T COG4858 101 SLLFLGAMALLSGITAFFQKNAQVYGL-ITLLLTAVVGGFAMYIM-YYYAYRMRADNSQRPGTWKYLLVAVLSMLLWIAV 178 (226)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCcchhH-HHHHHHHHhhhHHHHHH-HHHHHHhhcccccCCchHHHHHHHHHHHHHHHHH
Confidence 345555667777777777776544454 22222222111111111 112222 21 23445555665555555556666
Q ss_pred HHhhhcchhhHHHHhhcCchHHHHHHHHHHh
Q 020761 101 NKAFQFTSISSVTLLDCCAIPCAIVFTWVFL 131 (321)
Q Consensus 101 ~~al~~~~~~~~~~i~~~~pi~~~ils~l~l 131 (321)
+.+..+.|++. =-.+.|+...+++...+
T Consensus 179 ~i~t~~lPtsl---N~~L~pi~l~IiGav~l 206 (226)
T COG4858 179 MIATVFLPTSL---NPQLPPIALTIIGAVIL 206 (226)
T ss_pred HHHHhhCCCcC---CcCCchHHHHHHHHHHH
Confidence 67777777642 23455666666555443
No 128
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=60.04 E-value=37 Score=21.74 Aligned_cols=45 Identities=20% Similarity=0.343 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHhhhhhccccccccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhc
Q 020761 138 WQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVK 194 (321)
Q Consensus 138 ~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~ 194 (321)
...+|..+.++|++++..++. |.+..+++-...|...-..|+..+
T Consensus 4 v~v~G~~lv~~Gii~~~lPGp------------G~l~i~~GL~iLa~ef~wArr~l~ 48 (53)
T PF09656_consen 4 VGVLGWVLVVAGIIMLPLPGP------------GLLVIFLGLAILATEFPWARRLLR 48 (53)
T ss_pred hhhHHHHHHHHHHHhhcCCCC------------cHHHHHHHHHHHHHhhHHHHHHHH
Confidence 356788889999999887543 777888888888888777777654
No 129
>PF10749 DUF2534: Protein of unknown function (DUF2534); InterPro: IPR019685 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae.
Probab=59.62 E-value=58 Score=22.80 Aligned_cols=41 Identities=17% Similarity=0.454 Sum_probs=25.1
Q ss_pred cccccccchhhHH--HhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 020761 223 KSLESVKWSTDIL--SGATMLILSVLTSDMWAVILRIFCYHQQ 263 (321)
Q Consensus 223 ~~~~~~~~~~~~~--~~a~~~~~~~~~~pv~~~~~~~~~~~e~ 263 (321)
-+.|-..|..... .++.+.-.+...+.++++-++++++||.
T Consensus 42 YniP~s~WttsMf~~Q~ami~vYS~VFT~L~sIPlg~~FLG~~ 84 (85)
T PF10749_consen 42 YNIPFSEWTTSMFILQGAMILVYSIVFTILLSIPLGFYFLGED 84 (85)
T ss_pred hCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHheeeCCC
Confidence 4556667875544 5555555544456666777777777764
No 130
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=59.12 E-value=3.1 Score=36.35 Aligned_cols=74 Identities=15% Similarity=0.183 Sum_probs=0.0
Q ss_pred HhhhcchhhHHHHhhcCchH-HHHHHHHHHhhcc-hhHHHHHHHHHHHHhhhhhccccccccCCCCCcchhhhHHHHHHH
Q 020761 102 KAFQFTSISSVTLLDCCAIP-CAIVFTWVFLGTR-YSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGA 179 (321)
Q Consensus 102 ~al~~~~~~~~~~i~~~~pi-~~~ils~l~l~er-~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa 179 (321)
.-+.-.+-+..+++.+...+ .++++-.+++||| +-+...+++++.++-..+...-.. .+..-++|+++.++..
T Consensus 42 iimsd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tL-----tGQ~LF~Gi~~l~l~~ 116 (381)
T PF05297_consen 42 IIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTL-----TGQTLFVGIVILFLCC 116 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHh-----hccHHHHHHHHHHHHH
Confidence 33333333334444443333 3333333445554 556677777777766555544332 1233456776655544
Q ss_pred H
Q 020761 180 I 180 (321)
Q Consensus 180 ~ 180 (321)
.
T Consensus 117 l 117 (381)
T PF05297_consen 117 L 117 (381)
T ss_dssp -
T ss_pred H
Confidence 3
No 131
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=53.40 E-value=91 Score=28.69 Aligned_cols=8 Identities=0% Similarity=0.202 Sum_probs=3.5
Q ss_pred HHHHHHHH
Q 020761 249 DMWAVILR 256 (321)
Q Consensus 249 pv~~~~~~ 256 (321)
|+...+++
T Consensus 112 pi~~~l~g 119 (385)
T PF03547_consen 112 PILQALFG 119 (385)
T ss_pred HHHHHHhc
Confidence 44444443
No 132
>TIGR00895 2A0115 benzoate transport.
Probab=52.93 E-value=1.1e+02 Score=27.39 Aligned_cols=19 Identities=16% Similarity=0.149 Sum_probs=10.6
Q ss_pred hhcchhHHHHHHHHHHHHh
Q 020761 131 LGTRYSVWQLFGASLCVLG 149 (321)
Q Consensus 131 l~er~~~~~~~~~~l~~~G 149 (321)
+.||+++++++.....+.+
T Consensus 75 l~d~~g~~~~~~~~~~~~~ 93 (398)
T TIGR00895 75 LADRIGRKRVLLWSILLFS 93 (398)
T ss_pred HHHHhhhHHHHHHHHHHHH
Confidence 3477777766644443333
No 133
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=49.59 E-value=1.4e+02 Score=24.11 Aligned_cols=79 Identities=20% Similarity=0.259 Sum_probs=52.1
Q ss_pred HHHhhcchhHHHHHHHHH-------HHHhhhhhccccccccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhccC----
Q 020761 128 WVFLGTRYSVWQLFGASL-------CVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVKKI---- 196 (321)
Q Consensus 128 ~l~l~er~~~~~~~~~~l-------~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~~---- 196 (321)
..+-|..|+..+.+|+.+ ++.|+.++...+ +.+.......++.+++.|++-.++..-..+|.
T Consensus 90 m~v~KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~~-------~~~f~qsv~~gf~a~lGfslvmvlfA~iRER~~~ad 162 (193)
T COG4657 90 MVVRKTSPTLYRLLGIFLPLITTNCAVLGVALLNINE-------GHNFLQSVVYGFGAALGFSLVMVLFAAIRERLALAD 162 (193)
T ss_pred HHHHccCHHHHHHHHHhhhhHhhchHHHHHHHHHhhh-------hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHhc
Confidence 344555666666666554 467887775533 23455678888999999999888877766654
Q ss_pred --ChhhHHHHHHHHHHHHH
Q 020761 197 --DRVEVVCMIGVYGLLVS 213 (321)
Q Consensus 197 --~~~~~~~~~~~~~~~~~ 213 (321)
.|.+-..+..+.+.+..
T Consensus 163 vP~~frG~~ialitagLmS 181 (193)
T COG4657 163 VPAPFRGAAIALITAGLMS 181 (193)
T ss_pred CCCCCCCcchHHHHHHHHH
Confidence 24555666666666666
No 134
>PF10754 DUF2569: Protein of unknown function (DUF2569); InterPro: IPR019690 This entry represents a protein that is conserved in bacteria. The function is not known, but several members are annotated as being YdgK or a homologue thereof and associated to the inner membrane. This signature also matches proteins that are described as transglutaminase-like enzymes, although this could not be confirmed.
Probab=48.27 E-value=72 Score=25.23 Aligned_cols=74 Identities=7% Similarity=0.041 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcc-----ccccccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhc
Q 020761 120 IPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLL-----SDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVK 194 (321)
Q Consensus 120 pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~-----~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~ 194 (321)
-.++..+.++++|+|-+..+..-+ ..+++++.+.. ....++...+.+.....+..+.++..|.-|....||...
T Consensus 67 ~~~~l~~~~lffkr~~~~P~~~I~-~ll~~v~~~~l~~~~~~~~~~~~~~d~~~i~~l~~~li~a~IwipYf~~S~RVK~ 145 (149)
T PF10754_consen 67 WLFTLWLLYLFFKRKRRFPKLYII-WLLISVLFIALDAFAFSYIFPSPVIDAEAIRELLRSLIAAAIWIPYFLRSKRVKN 145 (149)
T ss_pred HHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Confidence 356667777777765554443322 22223321111 000012223344567889999999999999999998754
No 135
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=46.57 E-value=68 Score=27.48 Aligned_cols=36 Identities=25% Similarity=0.356 Sum_probs=26.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHH-hhccCChhhHHH
Q 020761 168 PLLGDILVIAGAIFFAMSYVGEEF-LVKKIDRVEVVC 203 (321)
Q Consensus 168 ~~~G~~l~l~aa~~~a~~~v~~k~-~~~~~~~~~~~~ 203 (321)
...-.+.+.+||+.+..|.+..-. ++++.+|-++.+
T Consensus 193 ~~~~~vya~lgAllf~~yl~~Dtqllm~~~SPEEYI~ 229 (237)
T KOG2322|consen 193 PILVMVYAALGALLFCGYLVYDTQLLMGRISPEEYIF 229 (237)
T ss_pred HHHHHHHHHHHHHHHhHHHHhhhHHHhccCCHHHHHH
Confidence 456778888889989888887655 456667766543
No 136
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=46.46 E-value=2.2e+02 Score=25.46 Aligned_cols=50 Identities=20% Similarity=0.224 Sum_probs=44.0
Q ss_pred hhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhh
Q 020761 104 FQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLM 153 (321)
Q Consensus 104 l~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~ 153 (321)
.++.++++=.++..+-..+.=+++.....|+++..|+.|.++...|+++-
T Consensus 283 tk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGFliLi~Gi~lY 332 (372)
T KOG3912|consen 283 TKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGFLILIMGIILY 332 (372)
T ss_pred HHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888889999888888888888889999999999999999998763
No 137
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=46.07 E-value=76 Score=23.78 Aligned_cols=24 Identities=21% Similarity=0.412 Sum_probs=21.0
Q ss_pred hcchhHHHHHHHHHHHHhhhhhcc
Q 020761 132 GTRYSVWQLFGASLCVLGLGLMLL 155 (321)
Q Consensus 132 ~er~~~~~~~~~~l~~~Gv~l~~~ 155 (321)
..|++..+-.++.+.++|++++..
T Consensus 5 ~~KiN~~R~~al~lif~g~~vmy~ 28 (114)
T PF11023_consen 5 SSKINKIRTFALSLIFIGMIVMYI 28 (114)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 468899999999999999999876
No 138
>TIGR00964 secE_bact preprotein translocase, SecE subunit, bacterial. This model represents exclusively the bacterial (and some organellar) SecE protein. SecE is part of the core heterotrimer, SecYEG, of the Sec preprotein translocase system. Other components are the ATPase SecA, a cytosolic chaperone SecB, and an accessory complex of SecDF and YajC.
Probab=45.91 E-value=56 Score=20.91 Aligned_cols=36 Identities=14% Similarity=0.303 Sum_probs=29.0
Q ss_pred eccCCchhhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 020761 10 CWSGRSQMALRTLYLLLLGQLVSFSLALSSFTTAVI 45 (321)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l 45 (321)
-|..|++..+.....++...+.++.+|+......++
T Consensus 16 ~WPt~~e~~~~t~~Vi~~~~~~~~~~~~~D~~~~~~ 51 (55)
T TIGR00964 16 VWPSRKELITYTIVVIVFVIFFSLFLFGVDYVFGKL 51 (55)
T ss_pred cCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888888888888887766554
No 139
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=44.74 E-value=1.7e+02 Score=23.83 Aligned_cols=90 Identities=16% Similarity=0.177 Sum_probs=48.6
Q ss_pred HHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHH-HHHHHHHhhhhhccccccccCCCCCcchhhhHHH
Q 020761 97 NFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLF-GASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILV 175 (321)
Q Consensus 97 ~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~-~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~ 175 (321)
...++.++++.+.-.|+...-...+....+.+... +|..+.+++ +..+.+.|.+-+...|. . --..-.-++..
T Consensus 10 li~FF~~yk~~~I~~AT~~livAt~i~l~~~w~~~-rkv~km~l~s~~~v~vFG~lTl~f~~d---~--FIKwK~TIi~~ 83 (180)
T COG2917 10 LILFFAAYKVYGIYAATAVLIVATVIQLAILWIKY-RKVEKMQLISGVVVVVFGGLTLIFHND---T--FIKWKPTIIYW 83 (180)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHhchhHhhccCc---c--eEEeeHHHHHH
Confidence 44556666665555555555455556666676654 455666665 44444666666655332 0 01122456666
Q ss_pred HHHHHHHHHHHHHHHHh
Q 020761 176 IAGAIFFAMSYVGEEFL 192 (321)
Q Consensus 176 l~aa~~~a~~~v~~k~~ 192 (321)
+.|.+..+-.....|..
T Consensus 84 lFa~~Llgs~~~~~k~l 100 (180)
T COG2917 84 LFALVLLGSQFLFKKPL 100 (180)
T ss_pred HHHHHHHHHHHHhcCcH
Confidence 77766666444443333
No 140
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=44.56 E-value=2.6e+02 Score=26.60 Aligned_cols=18 Identities=44% Similarity=0.667 Sum_probs=11.7
Q ss_pred chhhhHHHHHHHHHHHHH
Q 020761 168 PLLGDILVIAGAIFFAMS 185 (321)
Q Consensus 168 ~~~G~~l~l~aa~~~a~~ 185 (321)
...|.++.+.+...|...
T Consensus 418 ~~~~~~~~~~g~~~y~~~ 435 (473)
T TIGR00905 418 LLLGFILYAPGIIFYGRA 435 (473)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346777777777666653
No 141
>COG4760 Predicted membrane protein [Function unknown]
Probab=44.05 E-value=1.9e+02 Score=24.26 Aligned_cols=105 Identities=13% Similarity=0.035 Sum_probs=49.1
Q ss_pred HhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccccc-------cccCCCCCcchhhhHHHHHHHHHHHHHH
Q 020761 114 LLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDA-------EMAGGGGSRPLLGDILVIAGAIFFAMSY 186 (321)
Q Consensus 114 ~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~-------~~~~~~~~~~~~G~~l~l~aa~~~a~~~ 186 (321)
++...-..+.+++.+-----|.+++---.+.-+..|+.++...+. .+.+-..+....|+++.+.+...-|+..
T Consensus 149 vLgT~Gvf~gML~vYktGaIkvTpkF~r~v~a~~~Gvl~L~Lgn~vla~F~Gg~~pllr~gG~~~IiFSLfcigiAAf~f 228 (276)
T COG4760 149 VLGTFGVFFGMLVVYKTGAIKVTPKFTRMVVAATFGVLVLMLGNFVLAMFVGGGIPLLRSGGPFGIIFSLFCIGIAAFSF 228 (276)
T ss_pred HHHHHHHHHHHHHHHhcCceeecchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCceEeeHHHHHHHHHHHHH
Confidence 344444455555544322234443333333444445444433221 0111123334467777776666555555
Q ss_pred HHHH----HhhccCChhhHHHHHHHHHHHHHHHHHHhh
Q 020761 187 VGEE----FLVKKIDRVEVVCMIGVYGLLVSVVQLSTL 220 (321)
Q Consensus 187 v~~k----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 220 (321)
++.- +..+. ...+.+.|-..++..+. +.++..
T Consensus 229 llDFDaad~~vr~-GAP~kmaWgvAlGL~VT-LVWLY~ 264 (276)
T COG4760 229 LLDFDAADQMVRA-GAPEKMAWGVALGLTVT-LVWLYL 264 (276)
T ss_pred HhhhhHHHHHHHc-CChhhhHHHHHHhHHHH-HHHHHH
Confidence 5433 33322 45556677766776666 545433
No 142
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=40.13 E-value=2e+02 Score=23.61 Aligned_cols=57 Identities=21% Similarity=0.210 Sum_probs=31.6
Q ss_pred HHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHH-HHhhhhhcc
Q 020761 98 FLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLC-VLGLGLMLL 155 (321)
Q Consensus 98 ~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~-~~Gv~l~~~ 155 (321)
..++.++++.+.-.++...-...+.....++.. ++|+++.++++.++. +.|.+-+..
T Consensus 11 i~Ff~~y~~~~I~~AT~~~~vat~~~~~~~~~~-~~~v~~m~~is~~lv~vFGglTl~~ 68 (178)
T TIGR00997 11 IVFFATYKMTGIFAATIALLVATIIAIGLSYVK-YKKVEKMQWISFVLIVVFGGLTLIF 68 (178)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-hCCccHHHHHHHHHHHHHHHHHHHh
Confidence 344455555444444444444455556666554 569999988865544 445444444
No 143
>PF00584 SecE: SecE/Sec61-gamma subunits of protein translocation complex; InterPro: IPR001901 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. SecE, part of the main SecYEG translocase complex, is ~106 residues in length, and spans the inner membrane of the Gram-negative bacterial envelope. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. In eukaryotes, the evolutionary related protein sec61-gamma plays a role in protein translocation through the endoplasmic reticulum; it is part of a trimeric complex that also consist of sec61-alpha and beta []. Both secE and sec61-gamma are small proteins of about 60 to 90 amino acids that contain a single transmembrane region at their C-terminal extremity (Escherichia coli secE is an exception, in that it possess an extra N-terminal segment of 60 residues that contains two additional transmembrane domains) [].; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0016020 membrane; PDB: 3J01_B 2WW9_B 2WWA_B 3DL8_C 2WWB_B 3DIN_G 2ZJS_E 2ZQP_E.
Probab=39.51 E-value=1e+02 Score=19.71 Aligned_cols=36 Identities=14% Similarity=0.330 Sum_probs=27.3
Q ss_pred eccCCchhhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 020761 10 CWSGRSQMALRTLYLLLLGQLVSFSLALSSFTTAVI 45 (321)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l 45 (321)
.|+++++..+.....++...+.++..|+.......+
T Consensus 17 ~WP~~~e~~~~t~~Vl~~~~i~~~~~~~vD~~~~~~ 52 (57)
T PF00584_consen 17 TWPSRKELLKSTIIVLVFVIIFGLFFFLVDLIFSWL 52 (57)
T ss_dssp HCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888887777888888888888887665544
No 144
>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age. The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane
Probab=38.61 E-value=3.4e+02 Score=25.51 Aligned_cols=40 Identities=18% Similarity=0.202 Sum_probs=27.0
Q ss_pred cCchHHHH-HHHHHHh-hcchhHHHHHHHHHHHHhhhhhccc
Q 020761 117 CCAIPCAI-VFTWVFL-GTRYSVWQLFGASLCVLGLGLMLLS 156 (321)
Q Consensus 117 ~~~pi~~~-ils~l~l-~er~~~~~~~~~~l~~~Gv~l~~~~ 156 (321)
...|-+.+ +.+-.+. |-+++.|-+...++..+|.+++...
T Consensus 68 di~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~ 109 (402)
T PF02487_consen 68 DILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFS 109 (402)
T ss_pred HHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeec
Confidence 33444443 3444444 4566788888999999999999884
No 145
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=38.36 E-value=77 Score=27.74 Aligned_cols=39 Identities=8% Similarity=0.140 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccCC
Q 020761 249 DMWAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTAK 287 (321)
Q Consensus 249 pv~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~~ 287 (321)
.+...+++|++++.+-.+.++.|.++++.|+.+......
T Consensus 115 ip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV 153 (336)
T KOG2766|consen 115 IPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDV 153 (336)
T ss_pred hHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeee
Confidence 455788999999999999999999999999988876543
No 146
>PF15345 TMEM51: Transmembrane protein 51
Probab=38.18 E-value=11 Score=31.92 Aligned_cols=22 Identities=9% Similarity=0.046 Sum_probs=14.2
Q ss_pred HhHHHHHhhhhheeeccCCCCC
Q 020761 269 YLAFAAVLIGLIIYSTTAKDLL 290 (321)
Q Consensus 269 ~~G~~li~~g~~l~~~~~~~~~ 290 (321)
-.|+++.++++.+-.+.++++.
T Consensus 66 G~Gv~LLLLSICL~IR~KRr~r 87 (233)
T PF15345_consen 66 GSGVALLLLSICLSIRDKRRRR 87 (233)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh
Confidence 3466777777777776665543
No 147
>PRK07597 secE preprotein translocase subunit SecE; Reviewed
Probab=36.57 E-value=93 Score=20.55 Aligned_cols=36 Identities=14% Similarity=0.341 Sum_probs=28.4
Q ss_pred eccCCchhhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 020761 10 CWSGRSQMALRTLYLLLLGQLVSFSLALSSFTTAVI 45 (321)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l 45 (321)
.|..+++..+.....++...++++.+|+.......+
T Consensus 25 ~WPs~~e~~~~t~~Vi~~~~~~~~~i~~vD~~~~~~ 60 (64)
T PRK07597 25 TWPTRKELVRSTIVVLVFVAFFALFFYLVDLLFSKL 60 (64)
T ss_pred cCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788888888888888888888888887666554
No 148
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=35.47 E-value=3.6e+02 Score=24.90 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=17.4
Q ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcc
Q 020761 123 AIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLL 155 (321)
Q Consensus 123 ~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~ 155 (321)
..++..++++-|..... +| ..+-+|+.++..
T Consensus 3 ~vvl~~I~~GaR~GGig-lG-~~gg~G~~il~~ 33 (364)
T PF03605_consen 3 IVVLGAIFLGARLGGIG-LG-LAGGLGVAILVF 33 (364)
T ss_pred hHHHHHHHHhhcccchH-HH-HHHHHHHHHHHH
Confidence 45677888898885322 11 223445555554
No 149
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=35.26 E-value=4.3e+02 Score=25.74 Aligned_cols=36 Identities=14% Similarity=0.068 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHhcccchHHHHh-HHHHHhhhh
Q 020761 244 SVLTSDMWAVILRIFCYHQQVNWTYYL-AFAAVLIGL 279 (321)
Q Consensus 244 ~~~~~pv~~~~~~~~~~~e~~~~~~~~-G~~li~~g~ 279 (321)
..-..|+-+.++|.+.-+-..+....+ |+.+++.+.
T Consensus 352 ~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~ 388 (524)
T PF05977_consen 352 FFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSAL 388 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence 333467777777766544334333333 343333333
No 150
>TIGR00145 FTR1 family protein. A characterized member from yeast acts as oxidase-coupled high affinity iron transporter. Note that the apparent member from E. coli K12-MG1655 has a frameshift by homology with member sequences from other species.
Probab=34.07 E-value=3.4e+02 Score=24.14 Aligned_cols=25 Identities=12% Similarity=0.182 Sum_probs=16.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHh
Q 020761 13 GRSQMALRTLYLLLLGQLVSFSLAL 37 (321)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~a~~~~~ 37 (321)
++++.+|..+.|...+.++++..+.
T Consensus 33 ~~~~~~~~V~~G~~~gl~~s~~~a~ 57 (283)
T TIGR00145 33 QRTRLRGWVWVGVLAGFAACLAIGI 57 (283)
T ss_pred CccchhhHHHHHHHHHHHHHHHHHH
Confidence 4445566778888888877765443
No 151
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=32.23 E-value=1.9e+02 Score=28.01 Aligned_cols=20 Identities=5% Similarity=0.298 Sum_probs=13.6
Q ss_pred HHhHHHHHhhhhheeeccCC
Q 020761 268 YYLAFAAVLIGLIIYSTTAK 287 (321)
Q Consensus 268 ~~~G~~li~~g~~l~~~~~~ 287 (321)
-+.|++.++.|++.+..-+.
T Consensus 210 iI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 210 IIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred hHHHHHHHHHHheEEEEecC
Confidence 35677778888777766444
No 152
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=30.89 E-value=4.1e+02 Score=24.07 Aligned_cols=83 Identities=12% Similarity=0.014 Sum_probs=41.6
Q ss_pred hhcchhHHHHH-HHHHHHHhhhhhccccccccCCCCCcchhhhHHHHH-HHHHHHHHHHHHHHhhccCChhhHHHHHHHH
Q 020761 131 LGTRYSVWQLF-GASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIA-GAIFFAMSYVGEEFLVKKIDRVEVVCMIGVY 208 (321)
Q Consensus 131 l~er~~~~~~~-~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~-aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~ 208 (321)
+.+|+.|+..+ +++++.+|......-+..+ ..++...+..=.++ +.+.--+...=.||+.|.....-..+....+
T Consensus 22 lE~~~kwk~~Vpa~v~iy~gamff~t~Glfs---~~S~~y~~v~n~llpamI~lmLlqcd~Rki~Klg~rll~ifli~sv 98 (384)
T COG5505 22 LEQRFKWKSAVPAAVIIYAGAMFFTTVGLFS---VESPVYDTVWNYLLPAMIPLMLLQCDVRKIFKLGRRLLFIFLISSV 98 (384)
T ss_pred HHHHhCccchhhHHHHHHHHHHHHhhccccc---ccCcHHHHHHHHHHHHHHHHHHHHccHHHHHhhcchhhHHHHHHHH
Confidence 34556555443 6677777777766544321 11111122222222 2222333444457777765666666666666
Q ss_pred HHHHHHHH
Q 020761 209 GLLVSVVQ 216 (321)
Q Consensus 209 ~~~~~~i~ 216 (321)
+.++..+.
T Consensus 99 ~~vlGfIl 106 (384)
T COG5505 99 GTVLGFIL 106 (384)
T ss_pred HHHHHHHH
Confidence 66666443
No 153
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=30.65 E-value=4.8e+02 Score=24.80 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=18.9
Q ss_pred cchHHHHhHHHHHhhhhheeeccCC
Q 020761 263 QVNWTYYLAFAAVLIGLIIYSTTAK 287 (321)
Q Consensus 263 ~~~~~~~~G~~li~~g~~l~~~~~~ 287 (321)
.-++..++|.++.+..+.....+..
T Consensus 282 ~~~~~~iig~i~~~~~v~yss~ra~ 306 (429)
T PF03348_consen 282 WNTWQSIIGLIFTFVSVLYSSFRAS 306 (429)
T ss_pred cchHHHHHHHHHHHHHHHHhccccc
Confidence 3566789999999988877766553
No 154
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=30.36 E-value=4.3e+02 Score=24.22 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=43.7
Q ss_pred HHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhc
Q 020761 97 NFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLML 154 (321)
Q Consensus 97 ~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~ 154 (321)
-++...-.+|.+-..=..-.+...+++.+.|..+++.+++..-.+|+.+.+..+.+-.
T Consensus 264 GLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~ 321 (345)
T KOG2234|consen 264 GLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYS 321 (345)
T ss_pred chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhh
Confidence 4444455566665554555566788999999999999999999999998888877765
No 155
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=29.77 E-value=96 Score=24.45 Aligned_cols=38 Identities=11% Similarity=-0.056 Sum_probs=21.5
Q ss_pred hhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHH
Q 020761 108 SISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLC 146 (321)
Q Consensus 108 ~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~ 146 (321)
+.-.++.+.|..|+++.+++.++ -+++...+.+.++.+
T Consensus 73 slL~sA~LvYi~PL~~l~v~~~L-a~~L~~~e~~~~~~~ 110 (150)
T COG3086 73 SLLKSALLVYIFPLVGLFLGAIL-AQYLFFSELIVIFGA 110 (150)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHH
Confidence 34456677778888888777664 333333333333333
No 156
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=29.73 E-value=27 Score=26.65 Aligned_cols=10 Identities=10% Similarity=-0.094 Sum_probs=4.6
Q ss_pred HHhcccchHH
Q 020761 258 FCYHQQVNWT 267 (321)
Q Consensus 258 ~~~~e~~~~~ 267 (321)
++--|..+++
T Consensus 26 ~fR~ED~tpW 35 (125)
T PF15048_consen 26 FFRVEDATPW 35 (125)
T ss_pred heecCCCCCc
Confidence 3444555543
No 157
>PF11361 DUF3159: Protein of unknown function (DUF3159); InterPro: IPR016566 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are predicted to be integral membrane proteins (with several transmembrane segments).
Probab=29.22 E-value=2e+02 Score=23.88 Aligned_cols=73 Identities=15% Similarity=0.021 Sum_probs=40.6
Q ss_pred HHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccccccccCCCCCcchhhhHHHHHHHHHHHHHHHHHH
Q 020761 112 VTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEE 190 (321)
Q Consensus 112 ~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k 190 (321)
.+++....-......-.+.-||+++.. ..|++...++..+....+ +..+....|++.-...++.+.++.+..+
T Consensus 29 ~aliaA~~~a~~~~v~RL~r~~~~~~a-~~gl~gV~i~a~~A~~tG-----~A~~~Fl~gi~~n~~~~~~~l~S~lvr~ 101 (187)
T PF11361_consen 29 PALIAALAVAVVIVVWRLVRRESVQPA-LSGLFGVAISAAIAWRTG-----SAKDFFLPGIWTNAVYAVVFLVSVLVRW 101 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccHHH-HHHHHHHHHHHHHHHHHC-----ChhhhhHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444455555566666667777643 445554455544443311 2234456777777777777666655543
No 158
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=28.17 E-value=1.3e+02 Score=25.29 Aligned_cols=46 Identities=15% Similarity=0.034 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccch-HHHHhHH-HHHhhhhheee
Q 020761 238 ATMLILSVLTSDMWAVILRIFCYHQQVN-WTYYLAF-AAVLIGLIIYS 283 (321)
Q Consensus 238 a~~~~~~~~~~pv~~~~~~~~~~~e~~~-~~~~~G~-~li~~g~~l~~ 283 (321)
+...++.....|..+..++..+-+-.+. ..+++|. +++..|.....
T Consensus 33 ~l~ig~~~~~~~~lg~~~G~~~~~~i~~~~~~~ig~~iLi~iG~~mi~ 80 (206)
T TIGR02840 33 NLIIAVISGLFIFISMLLGKFLAKFLPPKVTEILGAFILIAIGIWIIY 80 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH
Confidence 3444444445788888888777654444 4566664 45667876543
No 159
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=27.71 E-value=5.1e+02 Score=24.65 Aligned_cols=58 Identities=19% Similarity=0.136 Sum_probs=29.3
Q ss_pred HHhhcchhHHHHH--HHHHHHHhhhhhccccccccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 020761 129 VFLGTRYSVWQLF--GASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVKK 195 (321)
Q Consensus 129 l~l~er~~~~~~~--~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~~ 195 (321)
++-|.|+|+.|.+ |+.+++.=+++++..+. -..+..+.++|+.+-++-..+.+...++
T Consensus 317 ~~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEh---------i~F~~AYliAa~a~i~Li~~Y~~~vl~~ 376 (430)
T PF06123_consen 317 LLSKLRIHPIQYLLVGLALVLFYLLLLSLSEH---------IGFNLAYLIAALACIGLISLYLSSVLKS 376 (430)
T ss_pred HHhcCcccHHHHHHHHHHHHHHHHHHHHHHhh---------hchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456677776655 44444444444444222 1234555555555555555555555443
No 160
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=27.21 E-value=16 Score=32.59 Aligned_cols=107 Identities=16% Similarity=0.174 Sum_probs=58.3
Q ss_pred HHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhh-----cc-----cc----cch-hh---HHHHHHHH
Q 020761 30 LVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLY-----RR-----QR----LQV-SW---YWYLLLGF 91 (321)
Q Consensus 30 ~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~-----~~-----~~----~~~-~~---~~~~~~g~ 91 (321)
+++++.||+-.-..|+.......| ..+++-|.++-++...+... .. +. ..+ +| ..-+.-|+
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~~-qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGv 80 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRLP-QHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGV 80 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCcc-ceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhH
Confidence 457788999766777776544233 23455555554444333321 11 10 111 22 22334455
Q ss_pred HHHHHHHHHHHhhhcchhhHHHHhh-cCchHHHHHHHHHHhhcchhHH
Q 020761 92 VDVQGNFLFNKAFQFTSISSVTLLD-CCAIPCAIVFTWVFLGTRYSVW 138 (321)
Q Consensus 92 ~~~~~~~~~~~al~~~~~~~~~~i~-~~~pi~~~ils~l~l~er~~~~ 138 (321)
+...+|++.-+|..+...+.+-++. .+.-+.-+.+-++ +..|.+..
T Consensus 81 vfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYf-ld~~~n~a 127 (336)
T PF07168_consen 81 VFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYF-LDPKINRA 127 (336)
T ss_pred hhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeee-ccCCCCCc
Confidence 5566699999999998888777664 3444444445544 34555543
No 161
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=27.05 E-value=1.1e+02 Score=23.66 Aligned_cols=42 Identities=21% Similarity=0.168 Sum_probs=23.6
Q ss_pred hhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhh
Q 020761 108 SISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGL 150 (321)
Q Consensus 108 ~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv 150 (321)
+...++.+.+..|+...+++.++ +..+...+..+++.+++|.
T Consensus 66 ~~~~aa~l~Y~lPll~li~g~~l-~~~~~~~e~~~~l~~l~~l 107 (135)
T PF04246_consen 66 SLLKAAFLVYLLPLLALIAGAVL-GSYLGGSELWAILGGLLGL 107 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 34456677777787777777654 3444433444444444443
No 162
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=26.94 E-value=49 Score=20.94 Aligned_cols=13 Identities=38% Similarity=0.468 Sum_probs=5.5
Q ss_pred hhhhheeeccCCC
Q 020761 276 LIGLIIYSTTAKD 288 (321)
Q Consensus 276 ~~g~~l~~~~~~~ 288 (321)
+.|+.+.+..+++
T Consensus 15 lLg~~I~~~~K~y 27 (50)
T PF12606_consen 15 LLGLSICTTLKAY 27 (50)
T ss_pred HHHHHHHHHhhcc
Confidence 3344444444433
No 163
>COG0690 SecE Preprotein translocase subunit SecE [Intracellular trafficking and secretion]
Probab=26.84 E-value=1.6e+02 Score=20.20 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=27.3
Q ss_pred eccCCchhhHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 020761 10 CWSGRSQMALRTLYLLLLGQLVSFSLALSSFTTAVI 45 (321)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l 45 (321)
.|..|++..+.....+....+.++++|+......++
T Consensus 35 ~WPsrke~~~~t~~Vl~~v~~~s~~~~~~D~l~~~~ 70 (73)
T COG0690 35 VWPTRKELIRSTLIVLVVVAFFSLFLYGLDQLIGKL 70 (73)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577778878887777888888888888887665544
No 164
>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]
Probab=26.23 E-value=4.2e+02 Score=22.76 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=20.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 020761 169 LLGDILVIAGAIFFAMSYVGEEFLVKK 195 (321)
Q Consensus 169 ~~G~~l~l~aa~~~a~~~v~~k~~~~~ 195 (321)
....+...++.+.++.+........++
T Consensus 170 ~l~~~IS~lgvlifsgli~yDtq~I~~ 196 (233)
T COG0670 170 ALHLAISVLGVLIFSGLIAYDTQNIKR 196 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888777766665
No 165
>PRK02935 hypothetical protein; Provisional
Probab=25.86 E-value=2.1e+02 Score=21.26 Aligned_cols=25 Identities=24% Similarity=0.402 Sum_probs=20.9
Q ss_pred hhcchhHHHHHHHHHHHHhhhhhcc
Q 020761 131 LGTRYSVWQLFGASLCVLGLGLMLL 155 (321)
Q Consensus 131 l~er~~~~~~~~~~l~~~Gv~l~~~ 155 (321)
...|+++.+-.++.+.++|.+++..
T Consensus 5 ~ssKINkiRt~aL~lvfiG~~vMy~ 29 (110)
T PRK02935 5 YSNKINKIRTFALSLVFIGFIVMYL 29 (110)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468889999999999999988766
No 166
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=25.17 E-value=7e+02 Score=24.96 Aligned_cols=64 Identities=8% Similarity=0.012 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhh
Q 020761 86 YLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGL 152 (321)
Q Consensus 86 ~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l 152 (321)
-++.|++...............+.++... ..+.|++....-.+ . ++=+.+.+..+.+++..+++
T Consensus 54 A~l~aiLyl~~py~l~~~y~rgni~e~lA-~~llPlvll~~~~~-~-~~~~~r~~~~lAl~~all~l 117 (616)
T PF10131_consen 54 AILAAILYLFSPYHLRNIYWRGNIPETLA-FALLPLVLLFLYRF-I-KKRKYRYWILLALSMALLAL 117 (616)
T ss_pred HHHHHHHHHHhHHHHHHHHhcchHHHHHH-HHHHHHHHHHHHHH-H-hcCCchhHHHHHHHHHHHHH
Confidence 34445555554333333444444443322 44566654322222 2 22234455555554444433
No 167
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed
Probab=25.14 E-value=6.1e+02 Score=24.23 Aligned_cols=32 Identities=31% Similarity=0.555 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcc
Q 020761 122 CAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLL 155 (321)
Q Consensus 122 ~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~ 155 (321)
+..++..++++-|..-. -+|+ .+=+|+.+++.
T Consensus 6 ~~~~l~~i~~g~r~ggi-g~g~-~gg~g~~il~~ 37 (443)
T PRK12489 6 FLILLICLFLGARYGGI-GLGL-LGGIGLVILVF 37 (443)
T ss_pred HHHHHHHHHHhhhhhhh-HHHH-HHHHHHHHHHH
Confidence 45677888899887742 1122 23345655554
No 168
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=25.10 E-value=82 Score=30.13 Aligned_cols=23 Identities=0% Similarity=0.015 Sum_probs=18.7
Q ss_pred chHHHHhHHHHHhhhhheeeccC
Q 020761 264 VNWTYYLAFAAVLIGLIIYSTTA 286 (321)
Q Consensus 264 ~~~~~~~G~~li~~g~~l~~~~~ 286 (321)
++..|++.+.++++|++++.+.+
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~ 276 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAP 276 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhh
Confidence 78889999999999987765543
No 169
>PRK11089 PTS system glucose-specific transporter subunits IIBC; Provisional
Probab=24.90 E-value=5e+02 Score=25.09 Aligned_cols=94 Identities=11% Similarity=0.053 Sum_probs=48.8
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHhhhcc--------------
Q 020761 11 WSGRSQMALRTLYLLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSLALAYGGILLYRR-------------- 76 (321)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~~l~l~~~~~~~~-------------- 76 (321)
+++-++.+|+..+++.....++..+.|..-+.-..-. +..|.... .+-.++++.........-
T Consensus 269 y~~ak~~~kk~vk~l~~sa~lta~ltGITEPieF~Fl--FvaP~Ly~-vHa~l~Gl~~~i~~~~~v~ig~~fs~G~iD~~ 345 (477)
T PRK11089 269 WHSAKPENRAKVGGIMISAALTSFLTGITEPIEFSFM--FVAPILYI-IHAILAGLAFPICILLGMRDGTSFSHGLIDFI 345 (477)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHhcCchHHHHHHH--HHhHHHHH-HHHHHHHHHHHHHHHhcCeeecccCCCceeee
Confidence 3344455666778877766666666555433332211 11444433 344444444433322111
Q ss_pred --cccchhhHHHHHHHHHHHHH-HHHHHHhhhcc
Q 020761 77 --QRLQVSWYWYLLLGFVDVQG-NFLFNKAFQFT 107 (321)
Q Consensus 77 --~~~~~~~~~~~~~g~~~~~~-~~~~~~al~~~ 107 (321)
...+.+|++.+..|++.... +..+.+.+++-
T Consensus 346 ~~~~~~~~~~~~~~vGi~~~~iYy~vF~f~I~k~ 379 (477)
T PRK11089 346 VLSGNSSKLWLFPIVGIGYAIVYYTIFRVLIKAL 379 (477)
T ss_pred eeccccccchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 11345777788888887666 44555666544
No 170
>PF14351 DUF4401: Domain of unknown function (DUF4401)
Probab=24.51 E-value=5.2e+02 Score=23.25 Aligned_cols=63 Identities=13% Similarity=0.054 Sum_probs=33.6
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHhhhhh-ccccccccCCCCCcchhhhHHHHHHHHHHHHHHHHHHH
Q 020761 124 IVFTWVFLGTRYSVWQLFGASLCVLGLGLM-LLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEF 191 (321)
Q Consensus 124 ~ils~l~l~er~~~~~~~~~~l~~~Gv~l~-~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~ 191 (321)
..+..+.+.-.-+.+...++.+...-..+. -+.+. +-+--.+...++..|.+..+.+.++.|+
T Consensus 262 ~~lllLll~~~~~~~~l~~l~~~~ll~~l~~YYY~L-----~~tLL~KS~~L~~~G~lLL~l~~~l~r~ 325 (326)
T PF14351_consen 262 AALLLLLLAFYRGSRWLFGLGVLALLYYLSWYYYQL-----QITLLQKSLLLMGSGLLLLVLRLLLWRL 325 (326)
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHc-----chHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333334444344444444444443333333 33343 1122236788888888888888888775
No 171
>KOG3747 consensus Concentrative Na+-nucleoside cotransporter CNT1/CNT2 [Nucleotide transport and metabolism; Inorganic ion transport and metabolism]
Probab=24.28 E-value=6.7e+02 Score=24.40 Aligned_cols=111 Identities=15% Similarity=0.096 Sum_probs=57.5
Q ss_pred HHHHhhhcchhhHHHHhhcCchHHHHHHHHHHhh--cchhHHHHHHHHHH--HHhhhhhccccccccCCCCCcchhhhH-
Q 020761 99 LFNKAFQFTSISSVTLLDCCAIPCAIVFTWVFLG--TRYSVWQLFGASLC--VLGLGLMLLSDAEMAGGGGSRPLLGDI- 173 (321)
Q Consensus 99 ~~~~al~~~~~~~~~~i~~~~pi~~~ils~l~l~--er~~~~~~~~~~l~--~~Gv~l~~~~~~~~~~~~~~~~~~G~~- 173 (321)
..+.++....- ...++....|.+-+++.+.+-| ++.+|+.....+.. +.|++++-++. +..-.+++|.-
T Consensus 165 ~~~l~~dt~~~-~~qLv~f~g~v~fIl~~f~fSk~~~~V~WriV~~gl~~qfllgllvlR~~~-----G~~~Fq~Lg~~V 238 (602)
T KOG3747|consen 165 VAWLIFDTRQD-PQQLVGFGGPVFFILFLFVFSKHHRAVNWRIVTSGLGLQFLLGLLVLRWPT-----GRWIFQWLGEQV 238 (602)
T ss_pred HHHHHHhhccc-HHHhhccccHHHHHHHHHhhcCCccccchhhhhHHHHHHHHHhheeeecCc-----chHHHHHHHHHH
Confidence 33344443333 4567778888888888888855 77888877765554 66776664422 11222334442
Q ss_pred HHHHHHHHHHHHHHHHHHhhccC-ChhhHHHHHHHHHHHHHHH
Q 020761 174 LVIAGAIFFAMSYVGEEFLVKKI-DRVEVVCMIGVYGLLVSVV 215 (321)
Q Consensus 174 l~l~aa~~~a~~~v~~k~~~~~~-~~~~~~~~~~~~~~~~~~i 215 (321)
-.++.-.--+...|...++.+.. =..+.+-...+++.++.++
T Consensus 239 ~~FL~Ya~~GA~FVFGd~i~d~~VFaF~~LpiiifFS~vvSiL 281 (602)
T KOG3747|consen 239 QIFLEYAQAGASFVFGDNICDLAVFAFAILPIIIFFSAVVSIL 281 (602)
T ss_pred HHHHHHHhcCceEeecchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 22333222333344444444331 1233344445555555533
No 172
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=23.86 E-value=6.4e+02 Score=24.05 Aligned_cols=20 Identities=0% Similarity=-0.039 Sum_probs=12.6
Q ss_pred HHhcccchHHHHhHHHHHhh
Q 020761 258 FCYHQQVNWTYYLAFAAVLI 277 (321)
Q Consensus 258 ~~~~e~~~~~~~~G~~li~~ 277 (321)
-.+|..+......|..+-+-
T Consensus 165 ~~lg~dlG~~il~Gl~vaip 184 (441)
T PF02447_consen 165 GALGADLGLVILYGLIVAIP 184 (441)
T ss_pred HHhCCChhHHHHHhHHHHHH
Confidence 34577777777777655443
No 173
>PRK05740 secE preprotein translocase subunit SecE; Reviewed
Probab=23.43 E-value=1.7e+02 Score=21.02 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=29.4
Q ss_pred eccCCchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 020761 10 CWSGRSQMALRTLYLLLLGQLVSFSLALSSFTTAVIT 46 (321)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~ 46 (321)
.|+.|++..+.....++...+.++.+|+.......+.
T Consensus 51 ~WPtr~e~~~~t~~Viv~~~i~~l~i~~~D~~~~~li 87 (92)
T PRK05740 51 VWPTRQETLQTTLIVIAVVIVMALILWGLDSILVWLI 87 (92)
T ss_pred cCcCHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888888888889988876665443
No 174
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=22.78 E-value=99 Score=17.16 Aligned_cols=20 Identities=10% Similarity=0.145 Sum_probs=10.7
Q ss_pred chHHHHhHHHHHhhhhheee
Q 020761 264 VNWTYYLAFAAVLIGLIIYS 283 (321)
Q Consensus 264 ~~~~~~~G~~li~~g~~l~~ 283 (321)
-++..++|.+++..+.+++.
T Consensus 10 ~~~~~~~G~~l~~~~~~~~~ 29 (34)
T TIGR01167 10 NSLLLLLGLLLLGLGGLLLR 29 (34)
T ss_pred cHHHHHHHHHHHHHHHHHhe
Confidence 34556677755555444443
No 175
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=22.45 E-value=1.3e+02 Score=23.97 Aligned_cols=24 Identities=13% Similarity=0.049 Sum_probs=15.4
Q ss_pred chhhHHHHhhcCchHHHHHHHHHH
Q 020761 107 TSISSVTLLDCCAIPCAIVFTWVF 130 (321)
Q Consensus 107 ~~~~~~~~i~~~~pi~~~ils~l~ 130 (321)
.+.-.++.+.|..|++.++.+..+
T Consensus 72 ~~llkaa~lvYllPLl~li~ga~l 95 (154)
T PRK10862 72 GSLLRSALLVYMTPLVGLFLGAAL 95 (154)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456677777887777766543
No 176
>PRK10213 nepI ribonucleoside transporter; Reviewed
Probab=22.09 E-value=6.1e+02 Score=23.18 Aligned_cols=43 Identities=9% Similarity=-0.158 Sum_probs=20.1
Q ss_pred hhhHHHHhhcCchHHHHHHHHHH--hhcchhHHHHHHHHHHHHhh
Q 020761 108 SISSVTLLDCCAIPCAIVFTWVF--LGTRYSVWQLFGASLCVLGL 150 (321)
Q Consensus 108 ~~~~~~~i~~~~pi~~~ils~l~--l~er~~~~~~~~~~l~~~Gv 150 (321)
+.+..........+...+...+. +-||+++++..-....+.++
T Consensus 53 s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~ 97 (394)
T PRK10213 53 SEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTL 97 (394)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHH
Confidence 44444444433443333333222 34777777765444444333
No 177
>PF02592 DUF165: Uncharacterized ACR, YhhQ family COG1738; InterPro: IPR003744 This is a family of uncharacterised proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins.
Probab=21.99 E-value=3.9e+02 Score=20.84 Aligned_cols=33 Identities=21% Similarity=0.123 Sum_probs=21.1
Q ss_pred ceeeeccCCchhhHHHHHHHHHHHHHHHHHHhH
Q 020761 6 AIISCWSGRSQMALRTLYLLLLGQLVSFSLALS 38 (321)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 38 (321)
.++++.-|++..+|-.+.+.+...+.+++.|..
T Consensus 15 Dii~E~yG~~~a~~~i~~g~~~~~~~~~~~~~~ 47 (145)
T PF02592_consen 15 DIISEVYGKKAARKAIWIGFLANLLFSLLIWIV 47 (145)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677777777777766666666655554
No 178
>PRK11715 inner membrane protein; Provisional
Probab=21.79 E-value=7e+02 Score=23.76 Aligned_cols=55 Identities=18% Similarity=0.067 Sum_probs=24.0
Q ss_pred hhcchhHHHHH--HHHHHHHhhhhhccccccccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHhhc
Q 020761 131 LGTRYSVWQLF--GASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLVK 194 (321)
Q Consensus 131 l~er~~~~~~~--~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~~ 194 (321)
-|.|+|+.|.+ |+.+++.=.++++..+. -..+..+.++|+.+-++-..+.....+
T Consensus 325 ~~~~iHpiQYlLVGlAl~lFYLLLLSlSEH---------igF~~AYliAa~a~v~li~~Y~~~vl~ 381 (436)
T PRK11715 325 KKLRIHPVQYLLVGLALVLFYLLLLSLSEH---------IGFTLAYLIAALACVLLIGFYLSAVLR 381 (436)
T ss_pred cCceecHHHHHHHHHHHHHHHHHHHHHHhh---------hchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666554 33333333333333221 113444444454444444444444433
No 179
>PRK15071 lipopolysaccharide ABC transporter permease; Provisional
Probab=21.72 E-value=3.5e+02 Score=24.56 Aligned_cols=41 Identities=17% Similarity=0.108 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 020761 24 LLLLGQLVSFSLALSSFTTAVITDLGVDAPITQSVLCYLSL 64 (321)
Q Consensus 24 ~~~~~~~~a~~~~~~~~~~~~l~~~~~~~p~~~~~~r~~~~ 64 (321)
++..++++.+..+....++..+...+..+|+..++.-.++.
T Consensus 304 ~i~~~i~~~~~y~~~~~~~~~lg~~g~l~P~laaw~P~iif 344 (356)
T PRK15071 304 RVVTGISFGFVFYVSNEIFGPLSLVYGIPPIIGALLPSLLF 344 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 34445555555555555555555444446655555544443
No 180
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=21.43 E-value=7.1e+02 Score=23.67 Aligned_cols=80 Identities=19% Similarity=0.164 Sum_probs=39.8
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHhhcCc-hHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhc
Q 020761 76 RQRLQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCA-IPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLML 154 (321)
Q Consensus 76 ~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~-pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~ 154 (321)
.++.+.|+..|++.|+.....+++...=-+|.+-..+-++.+.. .........-++|.+=....+.+++.++=|.+...
T Consensus 318 ~~~~~iHpiQY~LVGlAl~lFYlLLLSlSEhi~F~~AYliAa~a~i~Li~~Y~~~vl~~~k~~~~~~~~L~~LY~~Ly~l 397 (430)
T PF06123_consen 318 LSKLRIHPIQYLLVGLALVLFYLLLLSLSEHIGFNLAYLIAALACIGLISLYLSSVLKSWKRGLIFAGLLAALYGFLYVL 397 (430)
T ss_pred HhcCcccHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 34556677788888877665544433333555555554444333 22333333344554444444444444444444443
Q ss_pred c
Q 020761 155 L 155 (321)
Q Consensus 155 ~ 155 (321)
.
T Consensus 398 L 398 (430)
T PF06123_consen 398 L 398 (430)
T ss_pred H
Confidence 3
No 181
>PRK11715 inner membrane protein; Provisional
Probab=20.75 E-value=7.4e+02 Score=23.61 Aligned_cols=79 Identities=16% Similarity=0.086 Sum_probs=38.4
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHhhcCch-HHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhc
Q 020761 76 RQRLQVSWYWYLLLGFVDVQGNFLFNKAFQFTSISSVTLLDCCAI-PCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLML 154 (321)
Q Consensus 76 ~~~~~~~~~~~~~~g~~~~~~~~~~~~al~~~~~~~~~~i~~~~p-i~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~ 154 (321)
.++.+.|+..|++.|+.....+++...=-+|.+-..+-++.++.+ ........-++|.+=...-..+.+.++=|++...
T Consensus 324 ~~~~~iHpiQYlLVGlAl~lFYLLLLSlSEHigF~~AYliAa~a~v~li~~Y~~~vl~~~k~g~~~~~~L~~LYg~Ly~l 403 (436)
T PRK11715 324 LKKLRIHPVQYLLVGLALVLFYLLLLSLSEHIGFTLAYLIAALACVLLIGFYLSAVLRSWKRGLLFAAALAALYGVLYGL 403 (436)
T ss_pred hcCceecHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 345566777888888776655444433335666555555443332 2222223333444333333344444444444433
No 182
>TIGR02611 conserved hypothetical protein TIGR02611. Members of this family are Actinobacterial putative proteins of about 150 amino acids in length with three apparent transmembrane helix and an unusual motif with consensus sequence PGPGW.
Probab=20.58 E-value=3.9e+02 Score=20.37 Aligned_cols=44 Identities=16% Similarity=0.306 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhhhhccccccccCCCCCcchhhhHHHHHHHHHHHHHHHHHHHhh
Q 020761 138 WQLFGASLCVLGLGLMLLSDAEMAGGGGSRPLLGDILVIAGAIFFAMSYVGEEFLV 193 (321)
Q Consensus 138 ~~~~~~~l~~~Gv~l~~~~~~~~~~~~~~~~~~G~~l~l~aa~~~a~~~v~~k~~~ 193 (321)
...+|.++..+|++++..++. |.+..+.+-...|.-....++..
T Consensus 28 v~v~G~~~~~~Gi~ml~lPGp------------G~l~i~iGl~iLatEf~WA~r~L 71 (121)
T TIGR02611 28 VLVVGWVVLIVGIITIPLPGP------------GWLTIFIGLAILSLEFVWAQRLL 71 (121)
T ss_pred HHHHHHHHHHHHHHHhccCCc------------hHHHHHHHHHHHHHhhHHHHHHH
Confidence 346677888888888877554 66677777777776655555543
No 183
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=20.51 E-value=2.4e+02 Score=18.69 Aligned_cols=39 Identities=18% Similarity=0.183 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCC-ChhHHHH
Q 020761 19 LRTLYLLLLGQLVSFSLALSSFTTAVITDLGV-DAPITQS 57 (321)
Q Consensus 19 ~~~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~-~~p~~~~ 57 (321)
|+...++.+..+...++..-+....+...+|. ..|+.+.
T Consensus 2 ~~~~l~~~~~llg~~~l~i~~~~~syVd~~G~L~EpFfLi 41 (63)
T PF13127_consen 2 KKYILSLILLLLGVVCLFIFNIIGSYVDEDGVLHEPFFLI 41 (63)
T ss_pred cchHHHHHHHHHHHHHHHHHhcccceECCCCeEecccHHH
Confidence 34456666666666666666766666666653 4565433
No 184
>PF15102 TMEM154: TMEM154 protein family
Probab=20.28 E-value=1.1e+02 Score=24.10 Aligned_cols=22 Identities=9% Similarity=-0.055 Sum_probs=10.0
Q ss_pred HhHHHHHhhhhheeeccCCCCC
Q 020761 269 YLAFAAVLIGLIIYSTTAKDLL 290 (321)
Q Consensus 269 ~~G~~li~~g~~l~~~~~~~~~ 290 (321)
+++.++++..++++.+.++|+.
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred HHHHHHHHHHHHheeEEeeccc
Confidence 3344444444555555444433
No 185
>COG0795 Predicted permeases [General function prediction only]
Probab=20.02 E-value=3e+02 Score=25.18 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=10.6
Q ss_pred HHHHhHHHHHHHHHhcCCChhHHHHHHH
Q 020761 33 FSLALSSFTTAVITDLGVDAPITQSVLC 60 (321)
Q Consensus 33 ~~~~~~~~~~~~l~~~~~~~p~~~~~~r 60 (321)
+..+............+..+|+...+.-
T Consensus 319 ~~~~~~~~~~~~~~~~~~l~p~~a~~~p 346 (364)
T COG0795 319 LLFYVLLFLLGALALAGKLPPFLAAWLP 346 (364)
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHH
Confidence 3333333333333333332444433333
Done!