Query 020761
Match_columns 321
No_of_seqs 147 out of 1729
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 07:48:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020761.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020761hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.6 5.4E-07 1.8E-11 67.1 10.7 69 88-156 34-104 (110)
2 2i68_A Protein EMRE; transmemb 98.5 2E-07 6.8E-12 72.0 6.3 70 88-157 34-105 (137)
3 2i68_A Protein EMRE; transmemb 98.4 8.1E-07 2.8E-11 68.6 8.1 101 172-286 4-105 (137)
4 3b5d_A Multidrug transporter E 98.0 0.00015 5E-09 53.8 11.9 102 172-286 4-105 (110)
5 3dl8_C SECE; RECA-type ATPase 33.9 61 0.0021 20.7 4.2 37 10-46 19-55 (65)
6 3l1l_A Arginine/agmatine antip 31.7 32 0.0011 30.8 3.5 22 268-289 410-431 (445)
7 3din_D Preprotein translocase 26.7 56 0.0019 20.8 3.0 37 10-46 19-55 (65)
8 2zjs_E Preprotein translocase 25.4 1.1E+02 0.0038 19.0 4.2 33 10-42 20-52 (60)
9 3b9w_A Ammonium transporter fa 22.9 4.1E+02 0.014 23.7 15.4 120 84-211 177-306 (407)
10 2l2t_A Receptor tyrosine-prote 16.4 69 0.0023 18.8 1.6 14 276-289 27-40 (44)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.58 E-value=5.4e-07 Score=67.12 Aligned_cols=69 Identities=14% Similarity=0.287 Sum_probs=60.7
Q ss_pred HHHHHH-HHHHHHHHHhhhcchhhHHHHh-hcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhccc
Q 020761 88 LLGFVD-VQGNFLFNKAFQFTSISSVTLL-DCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLS 156 (321)
Q Consensus 88 ~~g~~~-~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~ 156 (321)
+.+.+. .....++..++++.|.+.+..+ ..+.|+++.+++++++||++++.+++|+.+.++|++++...
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 344444 4448888999999999999888 79999999999999999999999999999999999998763
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.49 E-value=2e-07 Score=72.03 Aligned_cols=70 Identities=14% Similarity=0.285 Sum_probs=50.3
Q ss_pred HHHHHH-HHHHHHHHHhhhcchhhHHHHh-hcCchHHHHHHHHHHhhcchhHHHHHHHHHHHHhhhhhcccc
Q 020761 88 LLGFVD-VQGNFLFNKAFQFTSISSVTLL-DCCAIPCAIVFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSD 157 (321)
Q Consensus 88 ~~g~~~-~~~~~~~~~al~~~~~~~~~~i-~~~~pi~~~ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~ 157 (321)
+.+++. ..+++++.+++++.|++.+..+ .++.|++++++++++++|++++.+++|+++.++|++++...+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344444 4448899999999999999888 899999999999999999999999999999999999987644
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.41 E-value=8.1e-07 Score=68.58 Aligned_cols=101 Identities=9% Similarity=-0.008 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHhHHHHHHH-HHHHHH
Q 020761 172 DILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDILSGATMLILS-VLTSDM 250 (321)
Q Consensus 172 ~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~~pv 250 (321)
.++.++++++.+..++..|+..+.... +....+.+...+.+..+... ... .+...+... ..+.|+
T Consensus 4 ~l~Ll~ail~ev~~~~~lK~s~g~~~~-----~~~~l~i~~~~ls~~l~~~a-lk~--------i~~s~ay~iw~~l~pv 69 (137)
T 2i68_A 4 YIYLGGAILAEVIGTTLMKFSEGFTRL-----WPSVGTIICYCASFWLLAQT-LAY--------IPTGIAYAIWSGVGIV 69 (137)
T ss_dssp CHHHHHHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHH-HC-------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchH-----HHHHHHHHHHHHHHHHHHHH-HHh--------CChhHHHHHHHHHHHH
Confidence 456778888899999988875321111 11112222221222222110 111 111112222 345999
Q ss_pred HHHHHHHHHhcccchHHHHhHHHHHhhhhheeeccC
Q 020761 251 WAVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTA 286 (321)
Q Consensus 251 ~~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 286 (321)
+++++++++++|++++.+++|+++|+.|+++.+..+
T Consensus 70 ~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 70 LISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999988654
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=97.97 E-value=0.00015 Score=53.75 Aligned_cols=102 Identities=11% Similarity=0.062 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccCChhhHHHHHHHHHHHHHHHHHHhhcccccccccchhhHHHhHHHHHHHHHHHHHH
Q 020761 172 DILVIAGAIFFAMSYVGEEFLVKKIDRVEVVCMIGVYGLLVSVVQLSTLELKSLESVKWSTDILSGATMLILSVLTSDMW 251 (321)
Q Consensus 172 ~~l~l~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~pv~ 251 (321)
.++.++++++.+..+...|+..+ ... . +-...+.+...+.+..+.. .....+-+ ...+.. .-+.|++
T Consensus 4 ~l~l~~a~~~e~~~~~~lK~s~~-~~~---~-~~~~~~~~~~~~~~~~~~~-al~~~p~s---~ay~i~----~g~~~v~ 70 (110)
T 3b5d_A 4 YIYLGGAILAEVIGTTLMKFSEG-FTR---L-WPSVGTIICYCASFWLLAQ-TLAYIPTG---IAYAIW----SGVGIVL 70 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhccC-cch---H-HHHHHHHHHHHHHHHHHHH-HHHhCChh---hHHHHH----hhHHHHH
Confidence 45677888999999999988532 111 1 1112222222122222211 11110111 011111 2348999
Q ss_pred HHHHHHHHhcccchHHHHhHHHHHhhhhheeeccC
Q 020761 252 AVILRIFCYHQQVNWTYYLAFAAVLIGLIIYSTTA 286 (321)
Q Consensus 252 ~~~~~~~~~~e~~~~~~~~G~~li~~g~~l~~~~~ 286 (321)
+.+.+++++||++++.+++|+.+|+.|+++.+..+
T Consensus 71 ~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 71 ISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999987643
No 5
>3dl8_C SECE; RECA-type ATPase membrane protein translocation protein- protein complex, ATP-binding, cell membrane; 7.50A {Aquifex aeolicus}
Probab=33.93 E-value=61 Score=20.66 Aligned_cols=37 Identities=16% Similarity=0.322 Sum_probs=22.1
Q ss_pred eccCCchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 020761 10 CWSGRSQMALRTLYLLLLGQLVSFSLALSSFTTAVIT 46 (321)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~ 46 (321)
.|+.|++..+.....++...+.++.+|+.......+.
T Consensus 19 ~WPtr~e~~~~T~vViv~v~i~~~~i~~vD~~~~~~~ 55 (65)
T 3dl8_C 19 VWPSRELVVKATISVIIFSLAIGVYLWILDLTFTKII 55 (65)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888888888888999988876665443
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=31.72 E-value=32 Score=30.79 Aligned_cols=22 Identities=14% Similarity=0.317 Sum_probs=13.6
Q ss_pred HHhHHHHHhhhhheeeccCCCC
Q 020761 268 YYLAFAAVLIGLIIYSTTAKDL 289 (321)
Q Consensus 268 ~~~G~~li~~g~~l~~~~~~~~ 289 (321)
...|...++.|+.+|...++++
T Consensus 410 ~~~~~~~~~~g~~~y~~~~~~~ 431 (445)
T 3l1l_A 410 VMWSFVTLMVITAMYALNYNRL 431 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 3456667777777776655443
No 7
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=26.70 E-value=56 Score=20.83 Aligned_cols=37 Identities=14% Similarity=0.245 Sum_probs=29.2
Q ss_pred eccCCchhhHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 020761 10 CWSGRSQMALRTLYLLLLGQLVSFSLALSSFTTAVIT 46 (321)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~l~ 46 (321)
.|+.|++..+.....++...+.++.+|+.......+.
T Consensus 19 ~WPtr~e~~~~T~vViv~~~i~~~~i~~vD~~~~~~~ 55 (65)
T 3din_D 19 SWPSRKELLTSFGVVLVILAVTSVYFFVLDFIFSGVV 55 (65)
T ss_dssp HHHHCCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777888888888888888899999998876665543
No 8
>2zjs_E Preprotein translocase SECE subunit; translocon, SEC, protein-conducting-channel, membrane, prote transport, translocation, transmembrane, transport; 3.20A {Thermus thermophilus} PDB: 2zqp_E
Probab=25.42 E-value=1.1e+02 Score=18.97 Aligned_cols=33 Identities=24% Similarity=0.262 Sum_probs=26.6
Q ss_pred eccCCchhhHHHHHHHHHHHHHHHHHHhHHHHH
Q 020761 10 CWSGRSQMALRTLYLLLLGQLVSFSLALSSFTT 42 (321)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 42 (321)
.|+.|++..+.....++...+.++.+|+.....
T Consensus 20 ~WPtr~e~~~~t~vViv~v~i~~~~~~~vD~~~ 52 (60)
T 2zjs_E 20 TWPTREQVVEGTQAILLFTLAFMVILGLYDTVF 52 (60)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888888888888888888888776543
No 9
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=22.94 E-value=4.1e+02 Score=23.75 Aligned_cols=120 Identities=17% Similarity=0.120 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHH-HHHHHHhhhcchhhHHHHhhcCchHHHH-----HHHHHHhhcchhHHHHHHHHHHHHhhhhhcccc
Q 020761 84 YWYLLLGFVDVQG-NFLFNKAFQFTSISSVTLLDCCAIPCAI-----VFTWVFLGTRYSVWQLFGASLCVLGLGLMLLSD 157 (321)
Q Consensus 84 ~~~~~~g~~~~~~-~~~~~~al~~~~~~~~~~i~~~~pi~~~-----ils~l~l~er~~~~~~~~~~l~~~Gv~l~~~~~ 157 (321)
..+..+|....-. ...++-++..........+....-.... ++++++.+.|++......- +++|.+-++-.-
T Consensus 177 ~~~~~lGt~lLW~GWfGFN~Gl~~~~~~~~a~~NT~lAaaag~l~~~~~~~~~~~gK~~~~~~~nG--~LAGLVAITa~~ 254 (407)
T 3b9w_A 177 DRFSMLGSMVLWLFWPSFATAIVPFEQMPQTIVNTLLALCGATLATYFLSALFHKGKASIVDMANA--ALAGGVAIGSVC 254 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHH--TTHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccchhhHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHh--hhhhhheeccCC
Confidence 3444555544333 5556777432222222222222222222 3333334566665544322 234444443311
Q ss_pred ccccCCCCCcchhhhHHHHHHHHHHHHHH-HHHH---HhhccCChhhHHHHHHHHHHH
Q 020761 158 AEMAGGGGSRPLLGDILVIAGAIFFAMSY-VGEE---FLVKKIDRVEVVCMIGVYGLL 211 (321)
Q Consensus 158 ~~~~~~~~~~~~~G~~l~l~aa~~~a~~~-v~~k---~~~~~~~~~~~~~~~~~~~~~ 211 (321)
.--..+...+.++.+++..-... .+.+ +..+-.|+..........|..
T Consensus 255 ------~~v~p~~A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHgv~Gi~ 306 (407)
T 3b9w_A 255 ------NIVGPVGAFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHGLPGLL 306 (407)
T ss_dssp ------TTSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTTHHHHH
T ss_pred ------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecchHHHHH
Confidence 11233445555555555443333 2222 223334666555554444333
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=16.41 E-value=69 Score=18.80 Aligned_cols=14 Identities=7% Similarity=0.045 Sum_probs=5.9
Q ss_pred hhhhheeeccCCCC
Q 020761 276 LIGLIIYSTTAKDL 289 (321)
Q Consensus 276 ~~g~~l~~~~~~~~ 289 (321)
..+.+++.++++.+
T Consensus 27 ~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 27 GLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHTTCSS
T ss_pred HHHHHHHhhhhhhh
Confidence 33444444444433
Done!