BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020765
(321 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5HZ00|SPS3_ARATH Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial
OS=Arabidopsis thaliana GN=SPS3 PE=1 SV=1
Length = 422
Score = 538 bits (1385), Expect = e-152, Method: Compositional matrix adjust.
Identities = 260/321 (80%), Positives = 294/321 (91%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
MV+AEVPKLASAAEYFFK GV+GK+FR T+LLLMATALNVRVPE L D + +ELR
Sbjct: 102 MVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALNVRVPEALIGESTDIVTSELRV 161
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALA 120
RQ+ IAEITEMIHVASLLHDDVLDDADTRRG+GSLN VMGNK++VLAGDFLLSRAC ALA
Sbjct: 162 RQRGIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALA 221
Query: 121 SLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIAL 180
+LKNTEVV LLAT VEHLVTGETM++T+S++QR SMDYYMQKTYYKTASLISNSCKA+A+
Sbjct: 222 ALKNTEVVALLATAVEHLVTGETMEITSSTEQRYSMDYYMQKTYYKTASLISNSCKAVAV 281
Query: 181 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 240
L GQTAEVA+LAF+YG+NLGLA+QLIDD+LDFTGTSASLGKGSLSDIRHG+ITAPILFAM
Sbjct: 282 LTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAM 341
Query: 241 EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDE 300
EEFPQLR VV+Q +D NVDIALEYLGKS+GIQ+ RELA++HANLAAAAI SLPE ++E
Sbjct: 342 EEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETDNE 401
Query: 301 DVTKSRRALLDLTHRVITRNK 321
DV +SRRAL+DLTHRVITRNK
Sbjct: 402 DVKRSRRALIDLTHRVITRNK 422
>sp|Q653T6|SPS1_ORYSJ Solanesyl-diphosphate synthase 1, mitochondrial OS=Oryza sativa
subsp. japonica GN=SPS1 PE=1 SV=1
Length = 430
Score = 503 bits (1295), Expect = e-142, Method: Compositional matrix adjust.
Identities = 242/321 (75%), Positives = 287/321 (89%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
MV AEVPKLASAAEYFFK+G EGKRFRPTVLLLMA+AL + + GV LA +LRT
Sbjct: 110 MVAAEVPKLASAAEYFFKVGAEGKRFRPTVLLLMASALKFPLSDSTEVGVLTILANKLRT 169
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALA 120
RQQ IAEITEMIHVASLLHDDVLDDADTRRG+ SLN +MGNKL+VLAGDFLLSRACVALA
Sbjct: 170 RQQNIAEITEMIHVASLLHDDVLDDADTRRGVSSLNCIMGNKLSVLAGDFLLSRACVALA 229
Query: 121 SLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIAL 180
+L NTEVV+L+AT VEHLVTGETMQ++TS +QR SMDYY+QKTYYKTASLISNSCKA+A+
Sbjct: 230 ALGNTEVVSLMATAVEHLVTGETMQISTSREQRRSMDYYLQKTYYKTASLISNSCKAVAI 289
Query: 181 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 240
LAG TA+V++LA++YG+NLGLA+QLIDDVLDFTGTSASLGKGSL+DIRHGIITAP+L+AM
Sbjct: 290 LAGHTADVSMLAYEYGRNLGLAFQLIDDVLDFTGTSASLGKGSLTDIRHGIITAPMLYAM 349
Query: 241 EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDE 300
EEFPQL VV++GF++ +NV++AL+YL KSRGI+KT+ELA +HAN A AI++LP+++DE
Sbjct: 350 EEFPQLHEVVDRGFDNPANVELALDYLQKSRGIEKTKELAREHANRAIKAIEALPDSDDE 409
Query: 301 DVTKSRRALLDLTHRVITRNK 321
DV SRRAL+D+T RVITR K
Sbjct: 410 DVLTSRRALIDITERVITRTK 430
>sp|Q54VJ9|DPS1_DICDI Decaprenyl-diphosphate synthase OS=Dictyostelium discoideum GN=coq1
PE=3 SV=1
Length = 456
Score = 254 bits (648), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 130/315 (41%), Positives = 207/315 (65%), Gaps = 26/315 (8%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 66
P L+S + Y+F++ +GKR RPT++LL++ AL++ + Q +A
Sbjct: 168 PILSSISSYYFEL--KGKRIRPTIVLLLS----------------KALSSTVHGSQLKLA 209
Query: 67 EITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTE 126
EI EMIH ASL+HDDV+D+A TRR + S+N NKLA+L GD+LL+RA V L++++N +
Sbjct: 210 EIVEMIHTASLVHDDVIDEASTRRDVISINHSYTNKLAILCGDYLLARASVVLSTIRNPD 269
Query: 127 VVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTA 186
V ++T + LV GE MQ S+ S D Y+QKTY KT SLI+NSC++ A+L+G +
Sbjct: 270 VTECMSTALAELVEGEFMQ--AKSNGVVSFDNYLQKTYLKTGSLITNSCRSAAILSGADS 327
Query: 187 EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQL 246
+ ++ ++GKNLGLA+Q++DD+LD+TG++ GK + D+ G+ TAP+L+A +EFPQL
Sbjct: 328 NIINISTEFGKNLGLAFQIVDDLLDYTGSAEECGKATSVDLTLGLATAPVLYATQEFPQL 387
Query: 247 RTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSR 306
++++ F + +V+ A + S+GI+KTR LA+++ N A ++ LP+ ++SR
Sbjct: 388 EKLIKRKFSEIGDVEEAKRLVALSKGIEKTRNLAIEYCNRAIQSLLKLPQ------SESR 441
Query: 307 RALLDLTHRVITRNK 321
L+ L+H V+TR K
Sbjct: 442 DLLITLSHIVVTRTK 456
>sp|Q7S565|COQ1_NEUCR Probable hexaprenyl pyrophosphate synthase, mitochondrial
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU02305 PE=3 SV=1
Length = 449
Score = 251 bits (640), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 149/351 (42%), Positives = 210/351 (59%), Gaps = 44/351 (12%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLM--ATALNVRVPEPLHDGVEDALA--------- 55
P L AA+Y+ + EGK RP ++LLM ATAL + P+ ++ + A
Sbjct: 107 PSLDRAAKYYTQ--AEGKHVRPLIVLLMSRATALCPKAPQRQQSTLQASAAIDTSISPLN 164
Query: 56 ------------------TELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNF 97
T++ Q+ +AEITE+IH ASLLHDDV+D +++RRG S N
Sbjct: 165 ILSDFNPSDATPVSIPADTDILPSQRRLAEITELIHTASLLHDDVIDHSESRRGAPSANL 224
Query: 98 VMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQM-TTSSDQRC-- 154
GNK+AVLAGDFLL RA VALA L++ EVV LLATV+ +LV GE MQ+ T+ D++
Sbjct: 225 EFGNKMAVLAGDFLLGRASVALARLRHAEVVELLATVIANLVEGEFMQLKNTARDEKNPK 284
Query: 155 ----SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVL 210
++ YY+QKTY KTASLIS SC+A ALL G A A+ YGKNLGLA+QL+DD+L
Sbjct: 285 WSEETLTYYLQKTYLKTASLISKSCRASALLGGADAATVDAAYLYGKNLGLAFQLVDDML 344
Query: 211 DFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKS 270
D+T + LGK + +D+ G+ TAP+LFA + P+L +V + FE + A E + +S
Sbjct: 345 DYTRSEKELGKPAGADLELGLATAPLLFAWKTMPELGPLVGRKFEKEGDAARARELVLQS 404
Query: 271 RGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 321
GI++TR LA +A A AI P++ +D L+++ + + RNK
Sbjct: 405 NGIEQTRALAQDYAEKAIEAISGFPDSEAKD------GLIEMAVKTLKRNK 449
>sp|Q33DR2|DPS1_MOUSE Decaprenyl-diphosphate synthase subunit 1 OS=Mus musculus GN=Pdss1
PE=1 SV=1
Length = 409
Score = 250 bits (639), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 133/314 (42%), Positives = 204/314 (64%), Gaps = 18/314 (5%)
Query: 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 67
+L +EY+F +GK FRP +++LMA A N+ H+ A E++ Q+ IA
Sbjct: 114 ELKDMSEYYFDG--KGKAFRPIIVVLMARACNIH-----HNN-----AREMQASQRSIAL 161
Query: 68 ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEV 127
+ EMIH A+L+HDDV+DDA +RRG ++N + G K AVLAGD +LS A VALA + NT V
Sbjct: 162 VAEMIHTATLVHDDVIDDASSRRGKHTVNKIWGEKKAVLAGDLILSAASVALARIGNTAV 221
Query: 128 VTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAE 187
V++LA V+E LV GE +Q+ + ++ +Y++KT+ KTASLI+NSCKA+++L
Sbjct: 222 VSMLAQVIEDLVRGEFLQLGSKENENERFAHYLEKTFKKTASLIANSCKAVSVLGCPDPV 281
Query: 188 VAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLR 247
V +A+ YGKN+G+A+QLIDDVLDFT S +GK + +D++ GI T P+LFA ++FP++
Sbjct: 282 VHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGKPTSADLKLGIATGPVLFACQQFPEMN 341
Query: 248 TVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRR 307
++ + F +VD A +Y+ +S G+Q+T LA ++ + A I L + + D
Sbjct: 342 AMIMRRFSLPGDVDRARQYVLQSDGVQQTTYLAQQYCHKAVREIRKLRPSTERD------ 395
Query: 308 ALLDLTHRVITRNK 321
AL+ L+ V+TR+K
Sbjct: 396 ALIQLSESVLTRDK 409
>sp|Q5T2R2|DPS1_HUMAN Decaprenyl-diphosphate synthase subunit 1 OS=Homo sapiens GN=PDSS1
PE=1 SV=1
Length = 415
Score = 242 bits (618), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 130/314 (41%), Positives = 200/314 (63%), Gaps = 18/314 (5%)
Query: 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 67
+L +EY+F +GK FRP ++ LMA A N+ H+ A+ Q+ IA
Sbjct: 120 ELKEMSEYYFDG--KGKAFRPIIVALMARACNIH-----HNNSRHVQAS-----QRAIAL 167
Query: 68 ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEV 127
I EMIH ASL+HDDV+DDA +RRG ++N + G K AVLAGD +LS A +ALA + NT V
Sbjct: 168 IAEMIHTASLVHDDVIDDASSRRGKHTVNKIWGEKKAVLAGDLILSAASIALARIGNTTV 227
Query: 128 VTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAE 187
+++L V+E LV GE +Q+ + ++ +Y++KT+ KTASLI+NSCKA+++L
Sbjct: 228 ISILTQVIEDLVRGEFLQLGSKENENERFAHYLEKTFKKTASLIANSCKAVSVLGCPDPV 287
Query: 188 VAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLR 247
V +A+ YGKN+G+A+QLIDDVLDFT S +GK + +D++ G+ T P+LFA ++FP++
Sbjct: 288 VHEIAYQYGKNVGIAFQLIDDVLDFTSCSDQMGKPTSADLKLGLATGPVLFACQQFPEMN 347
Query: 248 TVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRR 307
++ + F +VD A +Y+ +S G+Q+T LA ++ + A I L + + D
Sbjct: 348 AMIMRRFSLPGDVDRARQYVLQSDGVQQTTYLAQQYCHEAIREISKLRPSPERD------ 401
Query: 308 ALLDLTHRVITRNK 321
AL+ L+ V+TR+K
Sbjct: 402 ALIQLSEIVLTRDK 415
>sp|Q6CBH3|COQ1_YARLI Probable hexaprenyl pyrophosphate synthase, mitochondrial
OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=COQ1
PE=3 SV=1
Length = 452
Score = 238 bits (606), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 139/369 (37%), Positives = 215/369 (58%), Gaps = 63/369 (17%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRV----------------------PE 44
P L A Y+F+ EGK RP ++LL++ AL+ PE
Sbjct: 93 PTLNKVATYYFQS--EGKHVRPLIVLLLSRALSAIPESERDRGTFDASDVTENVGELNPE 150
Query: 45 P-----------LHDGVE------------DALATE---LRTRQQCIAEITEMIHVASLL 78
P LH G+ D L E + +Q+ +AEI EMIH ASLL
Sbjct: 151 PSINDPLSPIEILH-GINPDIVLNPLSRPSDPLPYESNGILPKQRRLAEIVEMIHTASLL 209
Query: 79 HDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHL 138
HDDV+D++ TRRG + N GNK+A+LAGDFLL RA VA+A L+N EV+ LL+T + +L
Sbjct: 210 HDDVIDNSATRRGSPTGNVAFGNKMAILAGDFLLGRASVAIARLRNAEVIELLSTTIANL 269
Query: 139 VTGETMQM------TTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILA 192
V GE MQ+ + + + +YY+ KTY KTASL+S SC+A A+L+G + +
Sbjct: 270 VEGEFMQLKNTIVDNSEIANKATFEYYIHKTYLKTASLMSKSCRAAAVLSGARNPIVDAS 329
Query: 193 FDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQ 252
+ +GKNLGL +Q++DD+LD++ + LGK + +D++ G+ TAP+LFA E++P+L ++++
Sbjct: 330 YKFGKNLGLCFQVVDDMLDYSEGESHLGKPAGADLKLGLATAPVLFAWEKYPELGDMIKR 389
Query: 253 GFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDL 312
F+ +V+ A + ++ G+ +TRELA K+ + A A +D LP ++SR AL +L
Sbjct: 390 KFDGPGDVERARFLVQQADGLSRTRELAQKYCDEAVANLDLLP------YSESREALRNL 443
Query: 313 THRVITRNK 321
T +++ R+K
Sbjct: 444 TMKMMNRSK 452
>sp|P72580|PREA_SYNY3 Prenyl transferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=preA PE=3 SV=2
Length = 323
Score = 237 bits (605), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 132/319 (41%), Positives = 199/319 (62%), Gaps = 22/319 (6%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
+V A P L +AAE+ F+ G GKR RP ++LL++ A L EL
Sbjct: 25 LVGARHPILGAAAEHLFEAG--GKRVRPAIVLLVSRAT--------------LLDQELTA 68
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALA 120
R + +AEITEMIH ASL+HDDV+D+AD RR + ++N + N++AVLAGDFL +++ LA
Sbjct: 69 RHRRLAEITEMIHTASLVHDDVVDEADLRRNVPTVNSLFDNRVAVLAGDFLFAQSSWYLA 128
Query: 121 SLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIAL 180
+L N EVV LL+ V+ GE +Q D ++ Y++K+Y+KTASLI+NS KA +
Sbjct: 129 NLDNLEVVKLLSEVIRDFAEGEILQSINRFDTDTDLETYLEKSYFKTASLIANSAKAAGV 188
Query: 181 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 240
L+ +V ++YGK+LGLA+Q++DD+LDFT + LGK + SD+ G ITAP LFAM
Sbjct: 189 LSDAPRDVCDHLYEYGKHLGLAFQIVDDILDFTSPTEVLGKPAGSDLISGNITAPALFAM 248
Query: 241 EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDE 300
E++P L ++E+ F + +++ ALE + + GI+++RELA A LA + L
Sbjct: 249 EKYPLLGKLIEREFAQAGDLEQALELVEQGDGIRRSRELAANQAQLARQHLSVL------ 302
Query: 301 DVTKSRRALLDLTHRVITR 319
+++ R +LL+L V+ R
Sbjct: 303 EMSAPRESLLELVDYVLGR 321
>sp|Q0INZ4|SPS3_ORYSJ Probable solanesyl-diphosphate synthase 3, chloroplastic (Fragment)
OS=Oryza sativa subsp. japonica GN=SPS3 PE=3 SV=1
Length = 372
Score = 229 bits (583), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/297 (39%), Positives = 193/297 (64%), Gaps = 13/297 (4%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
+V AE P L SAAE F G GKR RP ++ L++ A E A EL T
Sbjct: 71 LVGAENPVLVSAAEQIFGAG--GKRLRPALVFLVSRAT-----------AELAGLLELTT 117
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALA 120
Q +AEI EMIH ASL+HDDV+DD+ RRG +++ + G ++AVLAGDF+ +++ LA
Sbjct: 118 EHQRLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLA 177
Query: 121 SLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIAL 180
+L+N EV+ L++ V++ +GE Q +T D ++D Y+ K+YYKTASLI+ S ++ A+
Sbjct: 178 NLENIEVIKLISQVIKDFASGEIKQASTLFDCDITLDDYLLKSYYKTASLIAASTRSAAI 237
Query: 181 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 240
+G + + ++YG+NLGL++Q++DD+LDFT ++ LGK + SD+ G +TAP++FA+
Sbjct: 238 FSGVSTAICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFAL 297
Query: 241 EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPEN 297
++ PQLR +++ F +++++ A+E + +S GI++ ELA + +A ++ LP +
Sbjct: 298 QDEPQLREIIDSEFSETNSLATAIELVHRSGGIKRAHELAREKGEIAIQSLQCLPRS 354
>sp|Q75HZ9|SPS2_ORYSJ Solanesyl-diphosphate synthase 2, chloroplastic OS=Oryza sativa
subsp. japonica GN=SPS2 PE=1 SV=2
Length = 403
Score = 227 bits (579), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 117/298 (39%), Positives = 195/298 (65%), Gaps = 13/298 (4%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
+V AE P L SAAE F G GKR RP ++ L++ A E A EL T
Sbjct: 102 LVGAENPVLVSAAEQIF--GAGGKRLRPALVFLVSRAT-----------AELAGLLELTT 148
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALA 120
Q +AEI EMIH ASL+HDDV+DD+ RRG +++ + G ++AVLAGDF+ +++ LA
Sbjct: 149 EHQRLAEIIEMIHTASLIHDDVIDDSGMRRGKETIHQLYGTRVAVLAGDFMFAQSSWFLA 208
Query: 121 SLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIAL 180
+L+N EV+ L++ V++ +GE Q +T D ++D Y+ K+YYKTASL+++S ++ A+
Sbjct: 209 NLENIEVIKLISQVIKDFASGEIKQASTLFDCDVTLDDYLLKSYYKTASLLASSTRSAAI 268
Query: 181 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 240
+G + + ++YG+NLGL++Q++DD+LDFT ++ LGK + SD+ G +TAP++FA+
Sbjct: 269 FSGVSTTICEQMYEYGRNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFAL 328
Query: 241 EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 298
++ P+LR +++ F +S ++ A++ + +S GI++ +ELA + +LA + LP++
Sbjct: 329 QDEPKLREIIDSEFSESDSLATAIDLVHRSGGIRRAQELAKEKGDLALQNLQCLPKSQ 386
>sp|Q76FS5|SPS2_ARATH Solanesyl diphosphate synthase 2, chloroplastic OS=Arabidopsis
thaliana GN=SPS2 PE=1 SV=1
Length = 417
Score = 224 bits (571), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 121/295 (41%), Positives = 187/295 (63%), Gaps = 13/295 (4%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
+V AE P L SAAE F G GKR RP ++ L++ A E A EL
Sbjct: 116 IVGAENPVLISAAEQIFSAG--GKRMRPGLVFLVSRAT-----------AELAGLKELTV 162
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALA 120
+ + EI EMIH ASL+HDDVLD++D RRG +++ + G ++AVLAGDF+ ++A LA
Sbjct: 163 EHRRLGEIIEMIHTASLIHDDVLDESDMRRGRETVHELFGTRVAVLAGDFMFAQASWYLA 222
Query: 121 SLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIAL 180
+L+N EV+ L++ V++ +GE Q ++ D +D YM K+YYKTASL++ S K A+
Sbjct: 223 NLENLEVIKLISQVIKDFASGEIKQASSLFDCDVKLDDYMLKSYYKTASLVAASTKGAAI 282
Query: 181 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 240
+ ++VA + +GKNLGL++Q++DD+LDFT ++ LGK + +D+ G ITAP++FA+
Sbjct: 283 FSKVESKVAEQMYQFGKNLGLSFQVVDDILDFTQSTEQLGKPAANDLAKGNITAPVIFAL 342
Query: 241 EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLP 295
E P+LR ++E F + +++ A+E + GI+K +ELA + A LA ++ LP
Sbjct: 343 ENEPRLREIIESEFCEPGSLEEAIEIVRNRGGIKKAQELAKEKAELALKNLNCLP 397
>sp|Q8S948|SPS1_ARATH Solanesyl diphosphate synthase 1 OS=Arabidopsis thaliana GN=SPS1
PE=1 SV=1
Length = 406
Score = 221 bits (564), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 119/298 (39%), Positives = 190/298 (63%), Gaps = 13/298 (4%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
+V AE P L SAAE F G GKR RP ++ L++ H E A EL T
Sbjct: 105 IVGAENPVLISAAEQIF--GAGGKRMRPGLVFLVS-----------HATAELAGLKELTT 151
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALA 120
+ +AEI EMIH ASL+HDDVLD++D RRG +++ + G ++AVLAGDF+ ++A LA
Sbjct: 152 EHRRLAEIIEMIHTASLIHDDVLDESDMRRGKETVHELFGTRVAVLAGDFMFAQASWYLA 211
Query: 121 SLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIAL 180
+L+N EV+ L++ V++ +GE Q ++ D +D Y+ K++YKTASL++ S K A+
Sbjct: 212 NLENLEVIKLISQVIKDFASGEIKQASSLFDCDTKLDEYLLKSFYKTASLVAASTKGAAI 271
Query: 181 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 240
+ +V +++GKNLGL++Q++DD+LDFT ++ LGK + SD+ G +TAP++FA+
Sbjct: 272 FSRVEPDVTEQMYEFGKNLGLSFQIVDDILDFTQSTEQLGKPAGSDLAKGNLTAPVIFAL 331
Query: 241 EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 298
E P+LR ++E F ++ +++ A+E + K GI++ +ELA + A+ A + LP +
Sbjct: 332 EREPRLREIIESEFCEAGSLEEAIEAVTKGGGIKRAQELAREKADDAIKNLQCLPRSG 389
>sp|Q9TLS1|PREA_CYACA Prenyl transferase OS=Cyanidium caldarium GN=preA PE=3 SV=1
Length = 323
Score = 218 bits (555), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 199/315 (63%), Gaps = 22/315 (6%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 66
P L++AA++ + VE K+ RP ++LL+A A++ +++T QQ +A
Sbjct: 31 PILSAAAKHL--LIVESKKIRPAIVLLVAKAIDKN--------------KKIKTSQQRLA 74
Query: 67 EITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTE 126
E+TE+IH A+LLHDDV+D++ RRG S+N GNK+AV AGDFL +++ LA++ N E
Sbjct: 75 EVTEIIHTATLLHDDVVDESIIRRGTKSVNKTFGNKIAVFAGDFLFAQSSWYLANINNLE 134
Query: 127 VVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTA 186
VV ++ V+ L GE Q T + S+ Y++K++ KTASLI+ SCK+ LL+
Sbjct: 135 VVKAISKVITDLAEGELQQNLTQFNTYYSIIKYLEKSFNKTASLIAASCKSCCLLSDFDQ 194
Query: 187 EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQL 246
+ ++YGKNLGLA+Q+IDD+LD T +S +LGK + SD++ G +TAP+LFA+ + +L
Sbjct: 195 SLNSKFYNYGKNLGLAFQIIDDILDITSSSTALGKMTTSDLKLGNLTAPVLFALTKNSKL 254
Query: 247 RTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSR 306
++E+ F + S++ A+ + ++ I+++ +LA +H A +I LP ++++D
Sbjct: 255 FKIIEREFCEKSDISEAINIIKETNAIEESFDLAYEHIEAAINSIKDLPTSSEKD----- 309
Query: 307 RALLDLTHRVITRNK 321
+L+++ + ++ R K
Sbjct: 310 -SLIEIAYDLLNRYK 323
>sp|O43091|DPS1_SCHPO Decaprenyl-diphosphate synthase subunit 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=dps1 PE=1 SV=1
Length = 378
Score = 214 bits (544), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 121/315 (38%), Positives = 193/315 (61%), Gaps = 21/315 (6%)
Query: 22 EGKRFRPTVLLLM--ATALNVRVPEPL-------HDGVEDALATELRTRQQCIAEITEMI 72
+GK+ RP+++LLM AT+L + + D + ++ Q +A+ITEMI
Sbjct: 70 QGKQMRPSLVLLMSKATSLCHGIDRSVVGDKYIDDDDLRSFSTGQILPSQLRLAQITEMI 129
Query: 73 HVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLA 132
H+ASLLHDDV+D A+ RRG S N GN+ ++LAG+F+L+RA A+A L+N +V LLA
Sbjct: 130 HIASLLHDDVIDHANVRRGSPSSNVAFGNRRSILAGNFILARASTAMARLRNPQVTELLA 189
Query: 133 TVVEHLVTGETMQMTTSSD------QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTA 186
TV+ LV GE +Q+ + D ++ + DYY++K++ KTASLIS SCKA +L +
Sbjct: 190 TVIADLVRGEFLQLKNTMDPSSLEIKQSNFDYYIEKSFLKTASLISKSCKASTILGQCSP 249
Query: 187 EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQL 246
VA A +YG+ +G A+QL+DDVLD+T +LGK + +D++ G+ TAP+LFA +++P+L
Sbjct: 250 TVATAAGEYGRCIGTAFQLMDDVLDYTSKDDTLGKAAGADLKLGLATAPVLFAWKKYPEL 309
Query: 247 RTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSR 306
++ F S++ A + + I++T A ++ A ++ LP+ + +R
Sbjct: 310 GAMIVNRFNHPSDIQRARSLVECTDAIEQTITWAKEYIKKAKDSLLCLPD------SPAR 363
Query: 307 RALLDLTHRVITRNK 321
+AL L +VITR K
Sbjct: 364 KALFALADKVITRKK 378
>sp|P51268|PREA_PORPU Prenyl transferase OS=Porphyra purpurea GN=preA PE=3 SV=1
Length = 323
Score = 213 bits (542), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 118/313 (37%), Positives = 192/313 (61%), Gaps = 22/313 (7%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 66
P L +AA++ F+ G GKR RP ++LL+A + + + E++ Q+ +A
Sbjct: 31 PILYAAAKHLFEAG--GKRLRPAIVLLVAKSTSEQ--------------QEIKPGQRRLA 74
Query: 67 EITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTE 126
EITE+IH ASL+HDDV+D+ TRRG +++ + K+AVLAGDFL +++ LA++ N E
Sbjct: 75 EITEIIHTASLVHDDVIDECSTRRGEKTVHKLFNTKIAVLAGDFLFAQSSWYLANIGNLE 134
Query: 127 VVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTA 186
VV ++ V+ GE Q D S+D Y++K++YKTASL++ SC+ A+L +
Sbjct: 135 VVKVITKVITDFAEGEIRQGLVHFDPSISIDDYIEKSFYKTASLVAASCRGAAMLNDLNS 194
Query: 187 EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQL 246
++ + YGK++GLA+Q++DDVLD G++ SLGK S +D +G +TAPILFA+ + +L
Sbjct: 195 QMHNDLYLYGKHMGLAFQIMDDVLDIAGSTKSLGKPSGADFMNGNLTAPILFALTQEGKL 254
Query: 247 RTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSR 306
++++ F D ++ +AL + KS GI K ++LA + A + LP+ +
Sbjct: 255 DQLIQREFSDERDISLALFLIKKSGGITKAKDLAKEQVQAALCCLQFLPK------SAPV 308
Query: 307 RALLDLTHRVITR 319
+L +LTH +ITR
Sbjct: 309 SSLKELTHFIITR 321
>sp|P18900|COQ1_YEAST Hexaprenyl pyrophosphate synthase, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COQ1 PE=1
SV=1
Length = 473
Score = 211 bits (536), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 127/324 (39%), Positives = 184/324 (56%), Gaps = 52/324 (16%)
Query: 43 PEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNK 102
PEPL + D L +Q+ +AEI EMIH ASLLHDDV+D +DTRRG S N NK
Sbjct: 157 PEPLPEETFDKQRGIL-PKQRRLAEIVEMIHTASLLHDDVIDHSDTRRGRPSGNAAFTNK 215
Query: 103 LAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSS------------ 150
+AVLAGDFLL RA V+++ L N EVV L++ + +LV GE MQ+ +S
Sbjct: 216 MAVLAGDFLLGRATVSISRLHNPEVVELMSNSIANLVEGEFMQLKNTSIDADIDTIENGH 275
Query: 151 ------------------------------DQ--RCSMDYYMQKTYYKTASLISNSCKAI 178
DQ + +YY+ KTY KTA+LIS SC+
Sbjct: 276 KLLPVPSKKLEVKEHDFRVPSRQQGLQLSHDQIIETAFEYYIHKTYLKTAALISKSCRCA 335
Query: 179 ALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 238
A+L+G + V +D+G+NLG+ +QL+DD+LDFT + LGK S +D++ GI TAP+LF
Sbjct: 336 AILSGASPAVIDECYDFGRNLGICFQLVDDMLDFTVSGKDLGKPSGADLKLGIATAPVLF 395
Query: 239 AMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAI-DSLPEN 297
A +E P L ++ + F + +V+ ++ + GI KT+ LA ++ + A + DSLPE+
Sbjct: 396 AWKEDPSLGPLISRNFSERGDVEKTIDSVRLHNGIAKTKILAEEYRDKALQNLRDSLPES 455
Query: 298 NDEDVTKSRRALLDLTHRVITRNK 321
+ +R AL LT+ ++TR K
Sbjct: 456 D------ARSALEFLTNSILTRRK 473
>sp|Q1XDL8|PREA_PORYE Prenyl transferase OS=Porphyra yezoensis GN=preA PE=3 SV=1
Length = 323
Score = 207 bits (528), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 113/313 (36%), Positives = 193/313 (61%), Gaps = 22/313 (7%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 66
P L +AA++ F G GKR RP ++ L+A A + + ++ T Q+ +A
Sbjct: 31 PILYAAAKHLFDAG--GKRVRPALVFLVAKATSEK--------------QDINTGQKRLA 74
Query: 67 EITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTE 126
EITE+IH ASL+HDD++D+ TRRG+ +++ + K+AVLAGDFL +++ LA+++N
Sbjct: 75 EITEIIHTASLVHDDIIDECTTRRGVKTVHNLFNTKIAVLAGDFLFAQSSWYLANIENLA 134
Query: 127 VVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTA 186
VV ++ V+ GE Q D S+D Y++K++YKTASLI+ SC+ A+L G
Sbjct: 135 VVKAISKVITDFAEGEIRQGLVHFDPSISIDAYIEKSFYKTASLIAASCRGAAMLNGSNH 194
Query: 187 EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQL 246
++ + YGK++GLA+Q++DDVLD TG++ SLGK + +D+ +G +T+P+LF++ + L
Sbjct: 195 QINNDLYLYGKHMGLAFQIMDDVLDITGSTKSLGKPAGADLINGNLTSPLLFSLTQEASL 254
Query: 247 RTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSR 306
++++ F +S+++ L + +S GI K ++LA + A + + LP+ +
Sbjct: 255 NDLIDREFCNSTDIASTLFLIKRSGGITKAKDLAKEQVQAALSCLQFLPQ------STPV 308
Query: 307 RALLDLTHRVITR 319
+L +LTH +ITR
Sbjct: 309 SSLKELTHFIITR 321
>sp|P31171|PREA_CYAPA Prenyl transferase OS=Cyanophora paradoxa GN=preA PE=3 SV=1
Length = 323
Score = 204 bits (520), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 204/313 (65%), Gaps = 22/313 (7%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 66
P L++A+E+ F GKR RP ++LL++ A +E+ + T +R + +A
Sbjct: 31 PILSAASEHLF--SASGKRPRPAIVLLISKA-----------TMENEIIT---SRHRRLA 74
Query: 67 EITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTE 126
EITE+IH ASL+HDD+LD++D RRGI +++ G K+A+LAGDFL +++ LA+L++ E
Sbjct: 75 EITEIIHTASLVHDDILDESDVRRGIPTVHSDFGTKIAILAGDFLFAQSSWYLANLESLE 134
Query: 127 VVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTA 186
VV L++ V+ GE + +++ Y++K++YKTASL++ S KA ALL+
Sbjct: 135 VVKLISKVITDFAEGEIRRGLNQFKVDLTLEEYLEKSFYKTASLLAASSKAAALLSHVDL 194
Query: 187 EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQL 246
VA ++YG++LGLA+Q++DD+LDFT ++ LGK S SD++ G +TAP+LFA+E+ +L
Sbjct: 195 TVANDLYNYGRHLGLAFQIVDDILDFTSSTEELGKPSCSDLKKGNLTAPVLFALEQNSEL 254
Query: 247 RTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSR 306
++++ F + + + L+ + +++ I+KTRELA++HA +A +++LP ++ S+
Sbjct: 255 IPLIQRQFSEPKDFEYTLQIVEETKAIEKTRELAMEHAQVAIQCLENLPPSS------SK 308
Query: 307 RALLDLTHRVITR 319
AL +T V+ R
Sbjct: 309 EALKLITKYVLER 321
>sp|P0AD58|ISPB_SHIFL Octaprenyl-diphosphate synthase OS=Shigella flexneri GN=ispB PE=3
SV=1
Length = 323
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/304 (33%), Positives = 157/304 (51%), Gaps = 29/304 (9%)
Query: 23 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82
GKR RP + +L A A+ ++G IA + E IH A+LLHDDV
Sbjct: 44 GKRIRPMIAVLAARAVG-------YEG----------NAHVTIAALIEFIHTATLLHDDV 86
Query: 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGE 142
+D++D RRG + N GN +VL GDF+ +RA + SL + +V+ +++ V + GE
Sbjct: 87 VDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGE 146
Query: 143 TMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLA 202
+Q+ +D + + YM+ Y KTA L + + +LAG T E DYG+ LG A
Sbjct: 147 VLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLGTA 206
Query: 203 YQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM-----EEFPQLRTVVEQGFEDS 257
+QLIDD+LD+ LGK D+ G T P+L AM E+ +RT +EQG
Sbjct: 207 FQLIDDLLDYNADGEQLGKNVGDDLNEGKPTLPLLHAMHHGTPEQAQMIRTAIEQG-NGR 265
Query: 258 SNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVI 317
++ LE + ++ TR+ A + A+ A AA+ LP+ T R AL+ L H +
Sbjct: 266 HLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPD------TPWREALIGLAHIAV 319
Query: 318 TRNK 321
R++
Sbjct: 320 QRDR 323
>sp|P0AD57|ISPB_ECOLI Octaprenyl-diphosphate synthase OS=Escherichia coli (strain K12)
GN=ispB PE=1 SV=1
Length = 323
Score = 159 bits (402), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 103/304 (33%), Positives = 157/304 (51%), Gaps = 29/304 (9%)
Query: 23 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82
GKR RP + +L A A+ ++G IA + E IH A+LLHDDV
Sbjct: 44 GKRIRPMIAVLAARAVG-------YEG----------NAHVTIAALIEFIHTATLLHDDV 86
Query: 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGE 142
+D++D RRG + N GN +VL GDF+ +RA + SL + +V+ +++ V + GE
Sbjct: 87 VDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGE 146
Query: 143 TMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLA 202
+Q+ +D + + YM+ Y KTA L + + +LAG T E DYG+ LG A
Sbjct: 147 VLQLMNVNDPDITEENYMRVIYSKTARLFEAAAQCSGILAGCTPEEEKGLQDYGRYLGTA 206
Query: 203 YQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM-----EEFPQLRTVVEQGFEDS 257
+QLIDD+LD+ LGK D+ G T P+L AM E+ +RT +EQG
Sbjct: 207 FQLIDDLLDYNADGEQLGKNVGDDLNEGKPTLPLLHAMHHGTPEQAQMIRTAIEQG-NGR 265
Query: 258 SNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVI 317
++ LE + ++ TR+ A + A+ A AA+ LP+ T R AL+ L H +
Sbjct: 266 HLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPD------TPWREALIGLAHIAV 319
Query: 318 TRNK 321
R++
Sbjct: 320 QRDR 323
>sp|P44916|ISPB_HAEIN Octaprenyl-diphosphate synthase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ispB PE=1 SV=1
Length = 329
Score = 152 bits (385), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/322 (31%), Positives = 162/322 (50%), Gaps = 31/322 (9%)
Query: 4 AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQ 63
++VP + Y + G GKR RP + +L A +L +
Sbjct: 33 SDVPLIGQLGFYIVQGG--GKRIRPLIAVLAARSLGFEGSNSI----------------- 73
Query: 64 CIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 123
A E IH ASLLHDDV+D++D RRG + N GN +VL GDF+ +RA +A L+
Sbjct: 74 TCATFVEFIHTASLLHDDVVDESDMRRGRATANAEFGNAASVLVGDFIYTRAFQLVAQLE 133
Query: 124 NTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG 183
+ ++++++A L GE Q+ +D S YM+ Y KTA L + +A A++AG
Sbjct: 134 SLKILSIMADATNVLAEGEVQQLMNVNDPETSEANYMRVIYSKTARLFEVAGQAAAIVAG 193
Query: 184 QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM--- 240
T DYG+ LG A+QL+DDVLD++ + +LGK D+ G T P+L AM
Sbjct: 194 GTEAQEKALQDYGRYLGTAFQLVDDVLDYSANTQALGKNVGDDLAEGKPTLPLLHAMRHG 253
Query: 241 --EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 298
++ +R +EQG + + +D L + + + + A + A A AI+ LPE
Sbjct: 254 NAQQAALIREAIEQGGKREA-IDEVLAIMTEHKSLDYAMNRAKEEAQKAVDAIEILPE-- 310
Query: 299 DEDVTKSRRALLDLTHRVITRN 320
++ ++AL+ L + + RN
Sbjct: 311 ----SEYKQALISLAYLSVDRN 328
>sp|P55785|HEPS2_GEOSE Heptaprenyl diphosphate synthase component 2 OS=Geobacillus
stearothermophilus GN=hepT PE=3 SV=1
Length = 320
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 92/298 (30%), Positives = 151/298 (50%), Gaps = 20/298 (6%)
Query: 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 61
V +E L AA + + G GKR RP +LL A G D R
Sbjct: 25 VQSEYGPLGEAALHLLQAG--GKRIRPVFVLLAARF-----------GQYDL------ER 65
Query: 62 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS 121
+ +A E+IH+ASL+HDDV+DDAD RRG ++ N+ A+ GD+L +R+ +A
Sbjct: 66 MKHVAVALELIHMASLVHDDVIDDADLRRGRPTIKAKWSNRFAMYTGDYLFARSLERMAE 125
Query: 122 LKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALL 181
L N +LA + + GE Q+ + Y+++ KTA LI+ SC+ AL
Sbjct: 126 LGNPRAHQVLAKTIVEVCRGEIEQIKDKYRFDQPLRTYLRRIRRKTALLIAASCQLGALA 185
Query: 182 AGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME 241
AG + + +G +G+++Q+ DD+LDFTGT LGK + SD+ G +T P+L+A+
Sbjct: 186 AGAPEPIVKRLYWFGHYVGMSFQITDDILDFTGTEEQLGKPAGSDLLQGNVTLPVLYALS 245
Query: 242 EFPQLRTVVEQGFE-DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 298
+ + G E D + + + + ++ I+++ L+ ++ + A +D LP N
Sbjct: 246 DERVKAAIAAVGPETDVAEMAAVISAIKRTDAIERSYALSDRYLDKALHLLDGLPMNE 303
>sp|P31114|HEPS2_BACSU Heptaprenyl diphosphate synthase component 2 OS=Bacillus subtilis
(strain 168) GN=hepT PE=1 SV=1
Length = 348
Score = 124 bits (311), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 154/296 (52%), Gaps = 22/296 (7%)
Query: 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 61
V ++ P L+ A + + G GKR RP +LL + + +
Sbjct: 53 VRSDYPLLSEAGLHLLQAG--GKRIRPVFVLLSGMFGDYDI-----------------NK 93
Query: 62 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS 121
+ +A EMIH+ASL+HDDV+DDA+ RRG ++ N++A+ GD++L+ + +
Sbjct: 94 IKYVAVTLEMIHMASLVHDDVIDDAELRRGKPTIKAKWDNRIAMYTGDYMLAGSLEMMTR 153
Query: 122 LKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALL 181
+ + +L+ + + GE Q+ + ++ Y+++ KTA LI+ SC+ A+
Sbjct: 154 INEPKAHRILSQTIVEVCLGEIEQIKDKYNMEQNLRTYLRRIKRKTALLIAVSCQLGAIA 213
Query: 182 AGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME 241
+G ++ + +G +G++YQ+IDD+LDFT T LGK D+ G +T P+L+A++
Sbjct: 214 SGADEKIHKALYWFGYYVGMSYQIIDDILDFTSTEEELGKPVGGDLLQGNVTLPVLYALK 273
Query: 242 EFPQLRTVVEQGFEDSS--NVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLP 295
P L+ ++ +++ ++ +E + K+ I+ + ++ + A +++LP
Sbjct: 274 N-PALKNQLKLINSETTQEQLEPIIEEIKKTDAIEASMAVSEMYLQKAFQKLNTLP 328
>sp|O66129|HEXB_MICLU Hexaprenyl-diphosphate synthase large subunit
((2E,6E)-farnesyl-diphosphate specific) OS=Micrococcus
luteus GN=hexs-b PE=1 SV=1
Length = 325
Score = 122 bits (306), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 153/301 (50%), Gaps = 29/301 (9%)
Query: 9 LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 68
+ AA + G GKR RP +LL L+D +D L +RT A
Sbjct: 32 INKAAHHILSSG--GKRVRPMFVLLSGF---------LNDTQKDDL---IRT-----AVS 72
Query: 69 TEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVV 128
E++H+ASL+HDD +D++D RRG S++ A+ G FLL+RA +A++ N++
Sbjct: 73 LELVHMASLVHDDYIDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKFH 132
Query: 129 TLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEV 188
+ + + + GE QM + S Y+++ KTA LI SC AL + +
Sbjct: 133 QIFSKTILEVCFGEFDQMADRFNYPVSFTAYLRRINRKTAILIEASCHLGALSSQLDEQS 192
Query: 189 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM-----EEF 243
+G +G++YQ+IDD+LD+T A+LGK SDIR+G IT P++ A+ ++
Sbjct: 193 TYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIANLKEQDD 252
Query: 244 PQLRTVVEQGFEDSSNVDIALEYL---GKSRGIQKTRELAVKHANLAAAAIDSLPENNDE 300
+L VV+ S++ D +Y+ K GI+ L+ K+ + A + L ++N +
Sbjct: 253 DKLEAVVKH--LTSTSDDEVYQYIVSQVKQYGIEPAELLSRKYGDKAKYHLSQLQDSNIK 310
Query: 301 D 301
D
Sbjct: 311 D 311
>sp|O24743|SDSA_RHOCA All-trans-nonaprenyl-diphosphate synthase (geranyl-diphosphate
specific) OS=Rhodobacter capsulatus GN=sdsA PE=1 SV=1
Length = 325
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 94/323 (29%), Positives = 159/323 (49%), Gaps = 32/323 (9%)
Query: 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 61
+ ++V + S +++ + G GKR RP + LL A A T L+
Sbjct: 28 ISSKVALVMSVSKHVVEAG--GKRMRPIMCLLAAYACG---------------ETNLKHA 70
Query: 62 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS 121
Q+ +A I EM+H A+L+HDDV+D++ RRG + N N+ AVL GDFL++RA L
Sbjct: 71 QK-LAAIIEMLHTATLVHDDVVDESGLRRGRPTANATWNNQTAVLVGDFLIARAFDLLVD 129
Query: 122 LKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALL 181
L N ++ +T + GE +Q+ + D Y+Q + KT+ L + + A+L
Sbjct: 130 LDNMILLKDFSTGTCEIAEGEVLQLQAQHQPDTTEDIYLQIIHGKTSRLFELATEGAAIL 189
Query: 182 AGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM- 240
AG+ L + + G A+Q+IDD+LD+T + +LGK D+ G T P++ AM
Sbjct: 190 AGKPEYREPLR-RFAGHFGNAFQIIDDILDYTSDADTLGKNIGDDLMEGKPTLPLIAAMQ 248
Query: 241 ----EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPE 296
E+ +R + G +S ++ + + S + + A + A A++ LPE
Sbjct: 249 NTQGEQRDLIRRSIATG--GTSQLEQVIAIVQNSGALDYCHKRATEETERALQALEILPE 306
Query: 297 NNDEDVTKSRRALLDLTHRVITR 319
+ R+AL++LT + R
Sbjct: 307 ------STYRQALVNLTRLALDR 323
>sp|Q86YH6|DLP1_HUMAN Decaprenyl-diphosphate synthase subunit 2 OS=Homo sapiens GN=PDSS2
PE=1 SV=2
Length = 399
Score = 114 bits (286), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 82/283 (28%), Positives = 148/283 (52%), Gaps = 24/283 (8%)
Query: 25 RFRPTVLLLMATALNVRVPEPLHDGVEDA-LATELRTRQQCIAEITEMIHVASLLHDDVL 83
+ R V+LL++ A P ++ ++ + + + + Q+ +AEITE+IH+A L+H ++
Sbjct: 110 QLRGLVVLLISKAAG---PSSVNTSCQNYDMVSGIYSCQRSLAEITELIHIALLVHRGIV 166
Query: 84 DDADTRRGIGSL-NFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGE 142
+ + + G L + GNK+A+L+GDFLL+ AC LA L+NT+VV LLA+ + LV G
Sbjct: 167 NLNELQSSDGPLKDMQFGNKIAILSGDFLLANACNGLALLQNTKVVELLASALMDLVQGV 226
Query: 143 TMQMTTSSDQRCSMDY----YMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKN 198
+ +TS + + D + ++T+ +L++ SC+A LA AEV +AF YGK+
Sbjct: 227 YHENSTSKESYITDDIGISTWKEQTFLSHGALLAKSCQAAMELAKHDAEVQNMAFQYGKH 286
Query: 199 LGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME------EFPQLRTVVEQ 252
+ +++++ DV F S + + +AP++ E Q+ E+
Sbjct: 287 MAMSHKINSDVQPFIKEKTS------DSMTFNLNSAPVVLHQEFLGRDLWIKQIGEAQEK 340
Query: 253 GFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLP 295
G D + + E + +G+ +L H N A A++S P
Sbjct: 341 GRLDYAKLR---ERIKAGKGVTSAIDLCRYHGNKALEALESFP 380
>sp|Q53479|IDSA_METTM Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=idsA PE=1 SV=3
Length = 325
Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/319 (31%), Positives = 159/319 (49%), Gaps = 32/319 (10%)
Query: 9 LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 68
L A+E+ G GK+ RP++ LL A+ P EDA +A
Sbjct: 31 LLKASEHLITAG--GKKIRPSLALLSCEAVG---GNP-----EDAAG---------VAAA 71
Query: 69 TEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVV 128
E+IH SL+HDD++DD + RRG S++ + G +A+LAGD L S+A A+ ++E V
Sbjct: 72 IELIHTFSLIHDDIMDDDEMRRGEPSVHVIWGEPMAILAGDVLFSKAFEAVIRNGDSERV 131
Query: 129 T-LLATVVEHLVT---GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQ 184
LA VV+ V G+ + M + D YM+ Y KTA+LI+ + KA A++ G
Sbjct: 132 KDALAVVVDSCVKICEGQALDMGFEERLDVTEDEYMEMIYKKTAALIAAATKAGAIMGGA 191
Query: 185 TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFP 244
+ DYGK +GLA+Q+ DD LD SLGK SDI G +T ++ A+EE
Sbjct: 192 SEREVEALEDYGKFIGLAFQIHDDYLDVVSDEESLGKPVGSDIAEGKMTLMVVKALEEAS 251
Query: 245 Q---LRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDED 301
+ R + G D +V A+E + Q E+A+ + +A ++ L +++
Sbjct: 252 EEDRERLISILGSGDEGSVAEAIEIFERYGATQYAHEVALDYVRMAKERLEILEDSD--- 308
Query: 302 VTKSRRALLDLTHRVITRN 320
+R AL+ + V+ R
Sbjct: 309 ---ARDALMRIADFVLERE 324
>sp|Q33DR3|DLP1_MOUSE Decaprenyl-diphosphate synthase subunit 2 OS=Mus musculus GN=Pdss2
PE=1 SV=2
Length = 401
Score = 108 bits (269), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 129/243 (53%), Gaps = 15/243 (6%)
Query: 62 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSL-NFVMGNKLAVLAGDFLLSRACVALA 120
Q+ +AEITE+IH A L+H +++ ++ + G L + GNK+A+L+GDFLL+ AC LA
Sbjct: 146 QRSLAEITELIHTALLVHRGIVNLSELQSSDGPLKDMQFGNKIAILSGDFLLANACNGLA 205
Query: 121 SLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMD-----YYMQKTYYKTASLISNSC 175
L+NT+VV LL++ + LV G + + S+ + D + ++T+ +L++ SC
Sbjct: 206 LLQNTKVVELLSSALMDLVHGVYQENSASTKENSIPDDIGISTWKEQTFLSHCALLAKSC 265
Query: 176 KAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAP 235
+A LA A V +AF YGK++ +++++ D+ F AS K + +AP
Sbjct: 266 QAAMELAKHDAAVQDMAFQYGKHMAMSHKINADLQPFIKDKASDSK------TFNLNSAP 319
Query: 236 ILFAMEEFPQ---LRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID 292
++ E + ++ + E + S N E + +G+ +L H N A A++
Sbjct: 320 VVLHQEFLGRDLWIKQIGEAQEKGSLNYSKLRETIKAGKGVTSAIDLCRYHGNKALEALE 379
Query: 293 SLP 295
S P
Sbjct: 380 SFP 382
>sp|Q5U2R1|DLP1_RAT Decaprenyl-diphosphate synthase subunit 2 OS=Rattus norvegicus
GN=Pdss2 PE=2 SV=1
Length = 401
Score = 108 bits (269), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 77/245 (31%), Positives = 129/245 (52%), Gaps = 19/245 (7%)
Query: 62 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSL-NFVMGNKLAVLAGDFLLSRACVALA 120
Q+ +AEITE+IH A L+H +++ ++ + G L + GNK+AVL+GDFLL+ AC LA
Sbjct: 146 QRNLAEITELIHTALLVHRGIVNLSELQSSDGPLKDMKFGNKIAVLSGDFLLANACNGLA 205
Query: 121 SLKNTEVVTLLATVVEHLVTGETMQMTTSS-------DQRCSMDYYMQKTYYKTASLISN 173
L+NT+VV LLA+ + LV G + + S+ D R S + ++T+ +L++
Sbjct: 206 LLQNTKVVELLASALMDLVQGIYQENSASTQGNPIPDDIRIST--WKEQTFLSHCALLAK 263
Query: 174 SCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 233
SCKA LA A V +AF YGK++ +++++ D+ F AS K + +
Sbjct: 264 SCKAAMELAKHDAAVQDMAFQYGKHMAMSHKINSDLQPFIKDKASDSK------TFNLNS 317
Query: 234 APILFAMEEFPQ---LRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAA 290
AP++ E + ++ + E + N E + +G+ +L H N A A
Sbjct: 318 APVVLHQEFLGRDLWIKQIGEAQEKGRLNYTKLRETIKAGKGVTSAIDLCRYHGNKALEA 377
Query: 291 IDSLP 295
++S P
Sbjct: 378 LESFP 382
>sp|O26156|IDSA_METTH Short chain isoprenyl diphosphate synthase OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=idsA PE=3 SV=1
Length = 325
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 101/320 (31%), Positives = 162/320 (50%), Gaps = 34/320 (10%)
Query: 9 LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 68
L A+E+ G GK+ RP++ LL + A+ +P DA +A
Sbjct: 31 LLRASEHLITAG--GKKIRPSLALLSSEAVG---GDP-----GDAAG---------VAAA 71
Query: 69 TEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVV 128
E+IH SL+HDD++DD + RRG +++ + G +A+LAGD L S+A A+ ++E+V
Sbjct: 72 IELIHTFSLIHDDIMDDDEIRRGEPAVHVLWGEPMAILAGDVLFSKAFEAVIRNGDSEMV 131
Query: 129 T-LLATVVEHLVT---GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQ 184
LA VV+ V G+ + M + + YM+ Y KTA+LI+ + KA A++ G
Sbjct: 132 KEALAVVVDSCVKICEGQALDMGFEERLDVTEEEYMEMIYKKTAALIAAATKAGAIMGGG 191
Query: 185 TA-EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME-- 241
+ E+A L DYG+ +GLA+Q+ DD LD SLGK SDI G +T ++ A+E
Sbjct: 192 SPQEIAALE-DYGRCIGLAFQIHDDYLDVVSDEESLGKPVGSDIAEGKMTLMVVKALERA 250
Query: 242 -EFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDE 300
E + R + G D V A+E + + +A+ H +A ++ L E++
Sbjct: 251 SEKDRERLISILGSGDEKLVAEAIEIFERYGATEYAHAVALDHVRMAKERLEVLEESD-- 308
Query: 301 DVTKSRRALLDLTHRVITRN 320
+R AL + V+ R
Sbjct: 309 ----AREALAMIADFVLERE 324
>sp|Q58270|IDSA_METJA Short chain isoprenyl diphosphate synthase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=idsA PE=3 SV=1
Length = 327
Score = 105 bits (261), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 120/240 (50%), Gaps = 28/240 (11%)
Query: 8 KLASAAEYFFKMGVEGKRFRP--TVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCI 65
KL +A+++ G GKR RP TV+ M D +E+ L
Sbjct: 34 KLYNASKHLLFAG--GKRIRPYLTVVTYMLKK----------DDIEEVLPA--------- 72
Query: 66 AEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT 125
A E+IH +L+HDD++D+ D RRG +++ V G +A+LAGD L ++A A++ +K+
Sbjct: 73 AAAVELIHNYTLIHDDIMDNDDERRGKPTVHVVYGEPMAILAGDLLYAKAFEAVSRIKDN 132
Query: 126 ----EVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALL 181
EV+ +L+ + G+ M M + +M+ Y+ KT +L+ S A++
Sbjct: 133 KKAHEVLKILSKACVEVCEGQAMDMEFEN-YYPTMEEYLDMIRKKTGALLEASVGIGAVM 191
Query: 182 AGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME 241
A E +Y K +GL +Q+ DDVLD G LGK SDIR G T ++ A++
Sbjct: 192 ADCNEEEREALKEYAKRIGLTFQIQDDVLDLIGDQKKLGKPVGSDIREGKKTIIVIHALK 251
>sp|P39464|GGPS_SULAC Geranylgeranyl diphosphate synthase OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=gds PE=1 SV=1
Length = 330
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 72/247 (29%), Positives = 113/247 (45%), Gaps = 26/247 (10%)
Query: 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTR 61
+ +VPKL A+ + F G GKR RP +L + + + R R
Sbjct: 23 ISGDVPKLYEASYHLFTSG--GKRLRPLILTISSDLFGGQ-----------------RER 63
Query: 62 QQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA----CV 117
E++H +L+HDD++D + RRG+ +++ G LA+LAGD L ++A
Sbjct: 64 AYYAGAAIEVLHTFTLVHDDIMDQDNIRRGLPTVHVKYGLPLAILAGDLLHAKAFQLLTQ 123
Query: 118 ALASLKNTEVVTLLATVVEHLVT---GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNS 174
AL L + ++ ++ G+ + M Y+ KTA+L S S
Sbjct: 124 ALRGLPSETIIKAFDIFTRSIIIISEGQAVDMEFEDRIDIKEQEYLDMISRKTAALFSAS 183
Query: 175 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITA 234
AL+AG L D+G NLG+A+Q++DD+L T LGK SDIR G T
Sbjct: 184 SSIGALIAGANDNDVRLMSDFGTNLGIAFQIVDDILGLTADEKELGKPVFSDIREGKKTI 243
Query: 235 PILFAME 241
++ +E
Sbjct: 244 LVIKTLE 250
>sp|P95999|GGPS_SULSO Geranylgeranyl diphosphate synthase OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=gds
PE=3 SV=2
Length = 332
Score = 102 bits (253), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 94/333 (28%), Positives = 157/333 (47%), Gaps = 36/333 (10%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
V + L A+ + F G GKR RP VL+ D + + R
Sbjct: 24 FVKSNFKTLEEASFHLFTAG--GKRLRPLVLV----------------SSSDLIGGD-RE 64
Query: 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVAL- 119
R A E++H +L+HDD++D+ RRG+ +++ G +A+LAGD+L ++A AL
Sbjct: 65 RAYKAAAAVEILHNFTLVHDDIMDNDGLRRGLPTVHVKWGEPMAILAGDYLHAKAFEALN 124
Query: 120 ASLK----NT--EVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISN 173
+LK NT + ++ T +E + G+ M M+ + + + Y+Q KTA L S
Sbjct: 125 EALKGLDGNTFYKAFSIFITSIEIISEGQAMDMSFENRLDVTEEEYIQMIKGKTAMLFSC 184
Query: 174 SCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 233
S ++ +V +YG NLG+++Q++DD+L G LGK SDIR G T
Sbjct: 185 SAALGGIINKANDDVVKKLTEYGLNLGISFQIVDDILGIIGDEKELGKPIYSDIREGKKT 244
Query: 234 APILFAMEEFPQLRT---VVEQGFEDSSNVDI--ALEYLGKSRGIQKTRELAVKHANLAA 288
++ + E + V G +++ D+ A E + K +Q +LA K+++LA
Sbjct: 245 ILVIKTLSEATEDEKKILVSTLGNKEAKKEDLERASEIIRK-HSLQYAYDLAKKYSDLAI 303
Query: 289 AAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 321
+ +P +N + +AL L I R K
Sbjct: 304 ENLREIPVSN----KTAEKALKYLAQFTIQRRK 332
>sp|Q3IPL1|GFPS_NATPD Geranylfarnesyl diphosphate synthase OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=idsA3 PE=1 SV=1
Length = 341
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 92/329 (27%), Positives = 158/329 (48%), Gaps = 23/329 (6%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATAL-NVRVPEPL---HDGVEDALAT 56
+ V + +L SA+ Y G GKR RPT+LLL A +L +V EPL +
Sbjct: 26 LPVQKPERLYSASRYLLDAG--GKRLRPTILLLAAESLADV---EPLSADYRQFPSLPGD 80
Query: 57 ELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRAC 116
E+ ++ E+I +L+HDD++DD D RRG+ +++ + A+LAGD L S+A
Sbjct: 81 EVDVLSAAVS--IEVIQSFTLIHDDIMDDDDLRRGVPAVHREYDLETAILAGDTLYSKAF 138
Query: 117 -----VALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLI 171
+ ++ E + LAT + G+ + + + + + Y++ +KTA L
Sbjct: 139 EYMLDTGAPAERSVEALDELATTCTEICEGQALDVDFENRSDVTTEEYLEMVEFKTAVLY 198
Query: 172 SNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGI 231
+ + A+L G E YG ++G A+Q+ DD+LD T S LGK SD+
Sbjct: 199 AAAASIPAILLGSDDETVEALHGYGLDIGRAFQIQDDLLDLTAPSDELGKQRGSDLVENK 258
Query: 232 ITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAI 291
T L A ++ + +V D + ++ A++ L + I RE+A+ +
Sbjct: 259 RTVITLHARDQGIDVEGLVSDDPSD-AEIEAAVQTLEDAGSIDFAREMALDLVTSGKERL 317
Query: 292 DSLPENNDEDVTKSRRALLDLTHRVITRN 320
D LPEN ++R+ L D+ ++ R+
Sbjct: 318 DVLPEN------EARQLLEDIADFLVERS 340
>sp|P48368|CRTE_CYAPA Geranylgeranyl pyrophosphate synthase homolog OS=Cyanophora
paradoxa GN=crtE PE=3 SV=1
Length = 300
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 78/252 (30%), Positives = 123/252 (48%), Gaps = 29/252 (11%)
Query: 17 FKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVAS 76
+ + GKR RP +L +A+ E +E AL T A EMIH S
Sbjct: 43 YSLSAGGKRIRP--ILCLASC------ELAGGTMEMALPT---------ACALEMIHTMS 85
Query: 77 LLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS-LKNTE---VVTL 130
L+HDD+ +D+ RRG + + + G LA+LAGD LL+ A +A+ KN +V +
Sbjct: 86 LIHDDLPAMDNDSYRRGKPTNHIIYGEDLAILAGDALLAYAFEFIATQTKNVPADLIVKV 145
Query: 131 LATVVEH-----LVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQT 185
+A V LV G+ + +++ +++ +KT +L+ + + ALLAG
Sbjct: 146 IAQVAHSVTTSGLVGGQIIDLSSEGKSDTTLETLNFIHIHKTGALLEAAVLSGALLAGAK 205
Query: 186 AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE-FP 244
+ Y +N+GLA+Q+IDDVLD T LGK D++ T P + +EE
Sbjct: 206 EKDMNRFLRYAQNIGLAFQIIDDVLDIISTEEKLGKSIGKDLKTQKATYPSFWGVEESIK 265
Query: 245 QLRTVVEQGFED 256
Q +VE+ E+
Sbjct: 266 QAELLVEEAKEE 277
>sp|P0A5H8|EFPP_MYCTU (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium tuberculosis
GN=Rv3398c PE=1 SV=1
Length = 359
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 106/219 (48%), Gaps = 20/219 (9%)
Query: 23 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82
GK RP ++ + A A +P H + A++ EL +H SL+HDD+
Sbjct: 72 GKAIRPALVFVAAEAAGA---DP-HSAIPGAVSVEL-------------VHNFSLVHDDL 114
Query: 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVE---HLV 139
+D + RR ++ + G+ +A+LAGD +LS A L + V L + E L+
Sbjct: 115 MDRDEHRRHRPTVWALWGDAMALLAGDAMLSLAHEVLLDCDSPHVGAALRAISEATRELI 174
Query: 140 TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNL 199
G+ S ++D ++ KTA+L++ S + ALLAG V YG+++
Sbjct: 175 RGQAADTAFESRTDVALDECLKMAEGKTAALMAASAEVGALLAGAPRSVREALVAYGRHI 234
Query: 200 GLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 238
GLA+QL+DD+L G GK SD+R T P+ +
Sbjct: 235 GLAFQLVDDLLGIWGRPEITGKPVYSDLRSRKKTLPVTW 273
>sp|P0A5H9|EFPP_MYCBO (2E,6E)-farnesyl diphosphate synthase OS=Mycobacterium bovis
(strain ATCC BAA-935 / AF2122/97) GN=Mb3431c PE=3 SV=1
Length = 359
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/219 (30%), Positives = 106/219 (48%), Gaps = 20/219 (9%)
Query: 23 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82
GK RP ++ + A A +P H + A++ EL +H SL+HDD+
Sbjct: 72 GKAIRPALVFVAAEAAGA---DP-HSAIPGAVSVEL-------------VHNFSLVHDDL 114
Query: 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVE---HLV 139
+D + RR ++ + G+ +A+LAGD +LS A L + V L + E L+
Sbjct: 115 MDRDEHRRHRPTVWALWGDAMALLAGDAMLSLAHEVLLDCDSPHVGAALRAISEATRELI 174
Query: 140 TGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNL 199
G+ S ++D ++ KTA+L++ S + ALLAG V YG+++
Sbjct: 175 RGQAADTAFESRTDVALDECLKMAEGKTAALMAASAEVGALLAGAPRSVREALVAYGRHI 234
Query: 200 GLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 238
GLA+QL+DD+L G GK SD+R T P+ +
Sbjct: 235 GLAFQLVDDLLGIWGRPEITGKPVYSDLRSRKKTLPVTW 273
>sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea
brasiliensis GN=GGPS PE=1 SV=1
Length = 370
Score = 87.4 bits (215), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 110/231 (47%), Gaps = 28/231 (12%)
Query: 23 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82
GKR RP + L + G D++A A EMIH SL+HDD+
Sbjct: 118 GKRVRPALCLAACELV----------GGNDSMAMP-------AACAVEMIHTMSLIHDDL 160
Query: 83 --LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA-------CVALASLKNTEVVTLLAT 133
+D+ D RRG + + V G +AVLAGD LL+ A + ++S + V LA
Sbjct: 161 PCMDNDDLRRGKPTNHIVFGEDVAVLAGDALLAFAFEHIAVSTLNVSSARIVRAVGELAK 220
Query: 134 VV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAIL 191
+ E LV G+ + + + ++ +KTA L+ + A+L G T E
Sbjct: 221 AIGAEGLVAGQVVDINSEGSSEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEK 280
Query: 192 AFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE 242
Y +++GL +Q++DD+LD T +S LGK + D+ +T P L +E+
Sbjct: 281 LRKYARDIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKLLGIEK 331
>sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic
OS=Sinapis alba GN=GGPS1 PE=1 SV=1
Length = 366
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 80/249 (32%), Positives = 121/249 (48%), Gaps = 33/249 (13%)
Query: 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 67
K+ A Y G GKR RP VL + A L G E++LA R
Sbjct: 98 KIHEAMRYSLLAG--GKRVRP-VLCIAACELV---------GGEESLAMPARC------- 138
Query: 68 ITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT 125
EMIH SL+HDD+ +D+ D RRG + + V G +AVLAGD LLS A LAS ++
Sbjct: 139 AVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSS 198
Query: 126 EV--------VTLLATVV--EHLVTGETMQMTTSSD--QRCSMDYYMQKTYYKTASLISN 173
EV V LA + E LV G+ + +++ +++ +KTA+L+
Sbjct: 199 EVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEA 258
Query: 174 SCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 233
S ++ G + E + + +GL +Q++DD+LD T +S LGK + D+ +T
Sbjct: 259 SAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLIADKLT 318
Query: 234 APILFAMEE 242
P L +E+
Sbjct: 319 YPKLMGLEK 327
>sp|Q8PYS1|GFPS_METMA Geranylfarnesyl diphosphate synthase OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=MM_0789 PE=1 SV=1
Length = 295
Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 63/208 (30%), Positives = 96/208 (46%), Gaps = 21/208 (10%)
Query: 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQC 64
E P L E+ G GKR RP +LLL++ + + +R
Sbjct: 34 EDPGLKKMVEHVCHSG--GKRIRPIILLLVSE-----------------ICSGSYSRSLN 74
Query: 65 IAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 124
A EM+H ASL+HDD+LD RR + S G A+L GD+L++++ +A S
Sbjct: 75 AALAVEMMHSASLIHDDLLDQGLVRRNLPSAPEKFGPSGALLCGDYLIAKS-IAFISPYG 133
Query: 125 TEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQ 184
+V+ + GE + + + DY+ + Y KTASL + S A G
Sbjct: 134 EKVIQDFGKAGMDMAEGEVLDLKLEDESFGENDYF-KCIYKKTASLFAISASIGAYTGGA 192
Query: 185 TAEVAILAFDYGKNLGLAYQLIDDVLDF 212
E+A +G LG AYQ++DD+L+F
Sbjct: 193 EEELAERFSHFGNALGTAYQIVDDILEF 220
>sp|Q8PW34|GGPP_METMA Geranylgeranyl diphosphate synthase OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_1767 PE=3 SV=1
Length = 324
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 88/301 (29%), Positives = 143/301 (47%), Gaps = 32/301 (10%)
Query: 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATAL--NVRVPEPLHDGVEDALATELRTRQQCI 65
+L A+ Y G GKR RP VL+L A A+ N+R P A+A EL
Sbjct: 32 ELYKASRYLVDAG--GKRLRPAVLILAAEAVGSNLRSVLPA------AVAVEL------- 76
Query: 66 AEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT 125
+H +L+HDD++D D RRG+ +++ G A+LAGD L S+A L+ ++N
Sbjct: 77 ------VHNFTLIHDDIMDRDDIRRGMPAVHVKWGEAGAILAGDTLYSKAFEILSKVENE 130
Query: 126 EVVTL-----LATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIAL 180
V L L+ + G+ + M + ++ + Y++ KT+ L + + K AL
Sbjct: 131 PVRVLKCMDVLSKTCTEICEGQWLDMDFETRKKVTESEYLEMVEKKTSVLYAAAAKIGAL 190
Query: 181 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 240
L G + EVA +YG+ +G+ +Q+ DDVLD T LGK SD+ G T ++ A
Sbjct: 191 LGGASDEVAEALSEYGRLIGIGFQMYDDVLDMTAPEEVLGKVRGSDLMEGKYTLIVINAF 250
Query: 241 EEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSL---PEN 297
E+ +L + +G + A+ L + + + LA+ + +D L PE
Sbjct: 251 EKGVKL-DIFGKGEATLEETEAAVRTLTECGSLDYVKNLAISYIEEGKEKLDVLRDCPEK 309
Query: 298 N 298
Sbjct: 310 T 310
>sp|Q9UWR6|GFPS_AERPX Geranylfarnesyl diphosphate synthase OS=Aeropyrum pernix GN=fgs
PE=1 SV=1
Length = 318
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/243 (26%), Positives = 109/243 (44%), Gaps = 25/243 (10%)
Query: 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 67
+L+ A+ + K G GKR RP + LL A L E R +A
Sbjct: 17 RLSGASLHLIKAG--GKRLRPLITLLTARMLG---------------GLEAEARAIPLAA 59
Query: 68 ITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT-- 125
E H SL+HDD++D + RRG+ + + V G+ A+LAGD L + A +A +
Sbjct: 60 SIETAHTFSLIHDDIMDRDEVRRGVPTTHVVYGDDWAILAGDTLHAAAFKMIADSREWGM 119
Query: 126 ------EVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIA 179
+L+ + G+ M + Y+ KT +LI + + A
Sbjct: 120 SHEQAYRAFKVLSEAAIQISRGQAYDMLFEETWDVDVADYLNMVRLKTGALIEAAARIGA 179
Query: 180 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 239
+ AG +E+ + + G N G+A+Q+ DD+L G GK +D+R G T +++A
Sbjct: 180 VAAGAGSEIEKMMGEVGMNAGIAFQIRDDILGVIGDPKVTGKPVYNDLRRGKKTLLVIYA 239
Query: 240 MEE 242
+++
Sbjct: 240 VKK 242
>sp|P34802|GGPP1_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit
1, chloroplastic OS=Arabidopsis thaliana GN=GGPPS1 PE=1
SV=2
Length = 371
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/250 (30%), Positives = 121/250 (48%), Gaps = 34/250 (13%)
Query: 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 67
K+ A Y G GKR RP VL + A L G E++ A A
Sbjct: 102 KIHEAMRYSLLAG--GKRVRP-VLCIAACELV---------GGEESTAMP-------AAC 142
Query: 68 ITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT 125
EMIH SL+HDD+ +D+ D RRG + + V G +AVLAGD LLS A LAS ++
Sbjct: 143 AVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLSFAFEHLASATSS 202
Query: 126 EVVTLLATV-----------VEHLVTGETMQMTTSSD--QRCSMDYYMQKTYYKTASLIS 172
+VV+ + V E LV G+ + +++ +++ +KTA+L+
Sbjct: 203 DVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNDVGLEHLEFIHLHKTAALLE 262
Query: 173 NSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII 232
S A++ G + + + + +GL +Q++DD+LD T +S LGK + D+ +
Sbjct: 263 ASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDILDVTKSSKELGKTAGKDLIADKL 322
Query: 233 TAPILFAMEE 242
T P + +E+
Sbjct: 323 TYPKIMGLEK 332
>sp|Q08291|ISPA_GEOSE Farnesyl diphosphate synthase OS=Geobacillus stearothermophilus
PE=1 SV=1
Length = 297
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 74/246 (30%), Positives = 111/246 (45%), Gaps = 34/246 (13%)
Query: 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAE 67
KL A Y + G GKR RP +LL AL G + A+ +A
Sbjct: 33 KLKKAMAYSLEAG--GKRIRPLLLLSTVRAL----------GKDPAVGLP-------VAC 73
Query: 68 ITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT 125
EMIH SL+HDD+ +D+ D RRG + + V G +A+LAGD LL+ A + + +
Sbjct: 74 AIEMIHTYSLIHDDLPSMDNDDLRRGKPTNHKVFGEAMAILAGDGLLTYAFQLITEIDDE 133
Query: 126 EV--------VTLLATVV--EHLVTGETMQMTTSSDQ-RCSMDYYMQKTYYKTASLISNS 174
+ + LA E +V G+ M S Y+ + +KT ++ S
Sbjct: 134 RIPPSVRLRLIERLAKAAGPEGMVAGQAADMEGEGKTLTLSELEYIHR--HKTGKMLQYS 191
Query: 175 CKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITA 234
A AL+ G A ++ +LGLA+Q+ DD+LD G +GK SD + T
Sbjct: 192 VHAGALIGGADARQTRELDEFAAHLGLAFQIRDDILDIEGAEEKIGKPVGSDQSNNKATY 251
Query: 235 PILFAM 240
P L ++
Sbjct: 252 PALLSL 257
>sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum
annuum GN=GGPS1 PE=3 SV=1
Length = 369
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 124/254 (48%), Gaps = 32/254 (12%)
Query: 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRT 60
++V E + A Y G GKR RP +L L A L + E+A+A
Sbjct: 97 IIVKEPHVIHEAMRYSLLAG--GKRVRP-MLCLAACEL-------VGGNQENAMAA---- 142
Query: 61 RQQCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA--- 115
A EMIH SL+HDD+ +D+ D RRG + + + G +AVLAGD LL+ A
Sbjct: 143 -----ACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKIYGEDVAVLAGDSLLAFAFEH 197
Query: 116 -CVALASLKNTEVVTLLATV-----VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTAS 169
+ A + + +V +A + E LV G+ + + + S++ +KTA+
Sbjct: 198 IVNSTAGVTPSRIVGAVAELAKSIGTEGLVAGQVADIKCTGNASVSLETLEFIHVHKTAA 257
Query: 170 LISNSCKAIALLAGQT-AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIR 228
L+ +S A+L G T EV L + + +GL +Q++DD+LD T +S LGK + D+
Sbjct: 258 LLESSVVLGAILGGGTNVEVEKLR-RFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLV 316
Query: 229 HGIITAPILFAMEE 242
T P L +E+
Sbjct: 317 VDKTTYPKLLGLEK 330
>sp|P17060|CRTE_RHOCB Geranylgeranyl pyrophosphate synthase OS=Rhodobacter capsulatus
(strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=crtE PE=3
SV=1
Length = 289
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 108/232 (46%), Gaps = 39/232 (16%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 66
P LA+A Y G G R RPT+L+ +A A P V DA A L
Sbjct: 25 PLLAAALPYGVFPG--GARIRPTILVSVALACGDDCP-----AVTDAAAVAL-------- 69
Query: 67 EITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALA---- 120
E++H ASL+HDD+ D+AD RRG SL+ LAVLAGD LL R LA
Sbjct: 70 ---ELMHCASLVHDDLPAFDNADIRRGKPSLHKAYNEPLAVLAGDSLLIRGFEVLADVGA 126
Query: 121 -----SLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSC 175
+LK + L+ + G+ + S+ + + Y Q KT +L +
Sbjct: 127 VNPDRALKLISKLGQLSGARGGICAGQAWE----SESKVDLAAYHQA---KTGALFIAAT 179
Query: 176 KAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 227
+ A+ AG AE FD G +G A+Q+ DD+ D ++ ++GK + DI
Sbjct: 180 QMGAIAAGYEAEP---WFDLGMRIGSAFQIADDLKDALMSAEAMGKPAGQDI 228
>sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthase, chloroplastic
OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1
Length = 357
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/185 (31%), Positives = 96/185 (51%), Gaps = 11/185 (5%)
Query: 69 TEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLS-------RACVAL 119
EMIH SL+HDD+ +D+ D RRG + + V G +AVLAGD LL+ A +
Sbjct: 134 VEMIHTMSLMHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHIATATKGV 193
Query: 120 ASLKNTEVVTLLATVV--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKA 177
+S + VV LA + E LV G+ + + + +++ +KTA+L+ S
Sbjct: 194 SSERIVRVVGELAKCIGSEGLVAGQVVDVCSEGIADVGLEHLEFIHIHKTAALLEGSVVL 253
Query: 178 IALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPIL 237
A++ G E + + +GL +Q++DD+LD T +S LGK + D+ +T P L
Sbjct: 254 GAIVGGANDEQISKLRKFARCIGLLFQVVDDILDVTKSSQELGKTAGKDLVADKVTYPKL 313
Query: 238 FAMEE 242
+++
Sbjct: 314 LGIDK 318
>sp|Q9ZU77|GGPP7_ARATH Geranylgeranyl pyrophosphate synthase 7, chloroplastic
OS=Arabidopsis thaliana GN=At2g18620 PE=2 SV=1
Length = 347
Score = 74.7 bits (182), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 69/237 (29%), Positives = 116/237 (48%), Gaps = 30/237 (12%)
Query: 36 TALNVRVPEPLHDGVEDAL-ATELRTRQQ-CIAEI----------------TEMIHVASL 77
+A+++R P +H+ + +L A R R CIA EMIH SL
Sbjct: 72 SAVSLREPIKIHEAIRYSLLARGKRVRPVLCIAACELVGGEESVALPAACAVEMIHTMSL 131
Query: 78 LHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA------CVALASLKNTEVVT 129
+HDD+ +D+ D RRG + + V G +AVLAGD L+S A A++ + +
Sbjct: 132 IHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALISFAFEHLATSTAVSPARVVRAIG 191
Query: 130 LLATVV--EHLVTGETMQMTTSS-DQR-CSMDYYMQKTYYKTASLISNSCKAIALLAGQT 185
LA + + LV G+ + +T+ DQ ++ +KTA L+ + A++ G +
Sbjct: 192 ELAKAIGSKGLVAGQVVDLTSGGMDQNDVGLEVLEFIHVHKTAVLLEAATVLGAIVGGGS 251
Query: 186 AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE 242
E + + +GL +Q++DD+LD T +S LGK + D+ +T P L +E+
Sbjct: 252 DEEVEKLRRFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLIADKLTYPKLMGLEK 308
>sp|P21684|CRTE_PANAN Geranylgeranyl pyrophosphate synthase OS=Pantoea ananas GN=crtE
PE=3 SV=1
Length = 302
Score = 74.7 bits (182), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/199 (30%), Positives = 98/199 (49%), Gaps = 26/199 (13%)
Query: 23 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82
GKR RP +LLL A L V HDG+ D +A EM+H ASL+ DD+
Sbjct: 52 GKRIRPMLLLLTARDLGCAVS---HDGLLD------------LACAVEMVHAASLILDDM 96
Query: 83 --LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA------CVALASLKNTEVVTLLATV 134
+DDA RRG +++ G +A+LA LLS+A L L V+ L+
Sbjct: 97 PCMDDAKLRRGRPTIHSHYGEHVAILAAVALLSKAFGVIADADGLTPLAKNRAVSELSNA 156
Query: 135 V--EHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILA 192
+ + LV G+ ++ R S + + ++KT++L S + +++A ++E
Sbjct: 157 IGMQGLVQGQFKDLSEGDKPR-SAEAILMTNHFKTSTLFCASMQMASIVANASSEARDCL 215
Query: 193 FDYGKNLGLAYQLIDDVLD 211
+ +LG A+QL+DD+ D
Sbjct: 216 HRFSLDLGQAFQLLDDLTD 234
>sp|P54976|CRTE_RHOS4 Geranylgeranyl pyrophosphate synthase OS=Rhodobacter sphaeroides
(strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158)
GN=crtE PE=3 SV=3
Length = 288
Score = 73.2 bits (178), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 106/232 (45%), Gaps = 28/232 (12%)
Query: 4 AEVP-KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQ 62
+E P KLA+A +Y G G R RPT+LL +ATA P + DA A L
Sbjct: 21 SEAPSKLATALDYAVTPG--GARIRPTLLLSVATACGDDRP-----ALSDAAAVAL---- 69
Query: 63 QCIAEITEMIHVASLLHDDV--LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALA 120
E+IH ASL+HDD+ DDA+ RRG +++ LA+L GD L+ LA
Sbjct: 70 -------ELIHCASLVHDDLPCFDDAEIRRGKPTVHRAYSEPLAILTGDSLIVMGFEVLA 122
Query: 121 SLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYY---KTASLISNSCKA 177
+ L +V L M M + Q + + + Y KT +L + +
Sbjct: 123 RAAADQPQRAL-QLVTALAVRTGMPMGICAGQGWESESQINLSAYHRAKTGALFIAATQM 181
Query: 178 IALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRH 229
A+ AG AE + G +G A+Q+ DD+ D + +LGK + D H
Sbjct: 182 GAIAAGYEAEP---WEELGARIGEAFQVADDLRDALCDAETLGKPAGQDEIH 230
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,620,636
Number of Sequences: 539616
Number of extensions: 4264376
Number of successful extensions: 11761
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 11523
Number of HSP's gapped (non-prelim): 118
length of query: 321
length of database: 191,569,459
effective HSP length: 117
effective length of query: 204
effective length of database: 128,434,387
effective search space: 26200614948
effective search space used: 26200614948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)