Query 020765
Match_columns 321
No_of_seqs 226 out of 1159
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 04:59:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020765.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020765hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02890 geranyl diphosphate s 100.0 3E-72 6.5E-77 534.9 35.7 320 2-321 103-422 (422)
2 TIGR02749 prenyl_cyano solanes 100.0 1.9E-70 4E-75 511.9 34.5 298 2-321 25-322 (322)
3 CHL00151 preA prenyl transfera 100.0 1.1E-69 2.3E-74 507.6 33.5 297 3-321 27-323 (323)
4 PLN02857 octaprenyl-diphosphat 100.0 7.5E-70 1.6E-74 518.8 32.0 301 2-321 116-416 (416)
5 TIGR02748 GerC3_HepT heptapren 100.0 2.1E-69 4.6E-74 504.8 32.8 292 3-321 25-319 (319)
6 PRK10888 octaprenyl diphosphat 100.0 3.2E-69 6.9E-74 503.5 33.0 294 3-321 26-323 (323)
7 COG0142 IspA Geranylgeranyl py 100.0 5.6E-69 1.2E-73 501.9 33.2 296 4-321 25-322 (322)
8 PRK10581 geranyltranstransfera 100.0 2.3E-63 5.1E-68 459.1 27.7 258 6-321 29-299 (299)
9 cd00685 Trans_IPPS_HT Trans-Is 100.0 6.7E-60 1.4E-64 429.8 29.2 255 5-319 2-259 (259)
10 KOG0776 Geranylgeranyl pyropho 100.0 3.7E-60 7.9E-65 438.0 27.7 288 5-319 91-384 (384)
11 PF00348 polyprenyl_synt: Poly 100.0 2.7E-58 5.8E-63 419.4 22.0 249 11-280 3-259 (260)
12 cd00867 Trans_IPPS Trans-Isopr 100.0 2E-44 4.3E-49 323.4 25.9 235 26-319 1-236 (236)
13 KOG0777 Geranylgeranyl pyropho 100.0 5.4E-45 1.2E-49 311.8 20.6 270 6-298 20-293 (322)
14 KOG0711 Polyprenyl synthetase 100.0 1E-43 2.2E-48 317.4 24.1 298 6-321 37-347 (347)
15 cd00385 Isoprenoid_Biosyn_C1 I 99.9 8.5E-24 1.8E-28 187.0 26.9 211 64-298 14-227 (243)
16 PF07307 HEPPP_synt_1: Heptapr 97.8 0.0012 2.7E-08 57.9 14.9 102 61-170 34-136 (212)
17 PF00494 SQS_PSY: Squalene/phy 97.2 0.029 6.2E-07 51.1 16.6 198 68-298 22-229 (267)
18 TIGR01559 squal_synth farnesyl 97.1 0.043 9.2E-07 51.9 17.2 150 126-298 101-250 (336)
19 PLN02632 phytoene synthase 96.8 0.24 5.1E-06 46.9 19.6 138 134-298 141-280 (334)
20 cd00683 Trans_IPPS_HH Trans-Is 96.8 0.2 4.3E-06 45.6 18.3 135 133-297 93-227 (265)
21 TIGR03464 HpnC squalene syntha 96.7 0.18 4E-06 46.0 17.2 134 134-298 87-220 (266)
22 TIGR03465 HpnD squalene syntha 96.0 0.29 6.3E-06 44.6 14.6 134 133-297 85-218 (266)
23 cd00687 Terpene_cyclase_nonpla 94.1 4.2 9E-05 37.5 16.6 89 124-214 127-220 (303)
24 COG1562 ERG9 Phytoene/squalene 90.7 3.2 7E-05 38.4 10.8 137 132-298 102-238 (288)
25 PF03936 Terpene_synth_C: Terp 88.2 15 0.00032 32.9 13.2 86 127-213 138-228 (270)
26 cd00868 Terpene_cyclase_C1 Ter 87.1 22 0.00049 32.0 18.3 88 126-214 122-214 (284)
27 PRK12884 ubiA prenyltransferas 80.4 46 0.00099 30.3 15.3 156 64-242 41-199 (279)
28 cd00684 Terpene_cyclase_plant_ 73.0 1.1E+02 0.0024 30.9 16.5 105 124-241 354-465 (542)
29 PF01040 UbiA: UbiA prenyltran 66.9 90 0.002 27.5 15.3 148 71-240 34-188 (257)
30 TIGR02748 GerC3_HepT heptapren 63.7 65 0.0014 30.1 9.8 47 180-238 56-102 (319)
31 PRK10888 octaprenyl diphosphat 63.0 48 0.001 31.1 8.8 47 180-238 57-103 (323)
32 PRK10581 geranyltranstransfera 62.4 82 0.0018 29.2 10.1 59 65-123 208-278 (299)
33 PF06783 UPF0239: Uncharacteri 60.9 8.7 0.00019 28.6 2.6 25 186-210 15-39 (85)
34 PRK09573 (S)-2,3-di-O-geranylg 59.1 1.4E+02 0.0031 27.1 14.9 54 64-117 41-97 (279)
35 cd00685 Trans_IPPS_HT Trans-Is 57.5 1E+02 0.0022 27.7 9.7 44 183-238 34-78 (259)
36 TIGR01474 ubiA_proteo 4-hydrox 56.8 1.6E+02 0.0034 26.9 15.0 55 64-118 44-103 (281)
37 PRK12871 ubiA prenyltransferas 54.3 1.8E+02 0.004 26.9 12.4 46 72-118 54-113 (297)
38 PF00348 polyprenyl_synt: Poly 53.4 1.2E+02 0.0026 27.2 9.5 49 178-238 24-72 (260)
39 PRK07566 bacteriochlorophyll/c 53.2 1.9E+02 0.0042 26.9 14.0 50 67-116 72-124 (314)
40 PRK12882 ubiA prenyltransferas 52.3 1.8E+02 0.004 26.3 15.6 55 64-118 42-99 (276)
41 TIGR02749 prenyl_cyano solanes 44.4 1.6E+02 0.0034 27.6 8.9 36 191-238 71-106 (322)
42 PRK06080 1,4-dihydroxy-2-napht 39.0 2.1E+02 0.0046 26.1 8.9 82 155-238 2-90 (293)
43 TIGR02056 ChlG chlorophyll syn 33.6 3.9E+02 0.0085 24.7 14.6 50 67-116 61-113 (306)
44 PRK13105 ubiA prenyltransferas 32.4 1.1E+02 0.0025 28.1 5.8 61 167-238 139-200 (282)
45 PRK13387 1,4-dihydroxy-2-napht 31.6 1.1E+02 0.0024 28.6 5.7 61 155-215 2-67 (317)
46 CHL00151 preA prenyl transfera 31.0 4.3E+02 0.0093 24.7 9.6 21 65-85 200-220 (323)
47 PLN02857 octaprenyl-diphosphat 29.7 3.6E+02 0.0077 26.4 9.0 22 64-85 292-313 (416)
48 PLN00012 chlorophyll synthetas 29.4 82 0.0018 30.4 4.5 44 65-108 128-174 (375)
49 PLN02279 ent-kaur-16-ene synth 28.2 5.7E+02 0.012 27.3 10.7 103 125-240 589-696 (784)
50 PRK12883 ubiA prenyltransferas 27.7 4.6E+02 0.01 23.7 13.3 51 66-116 43-96 (277)
51 TIGR01476 chlor_syn_BchG bacte 27.0 1.5E+02 0.0033 27.0 5.7 49 65-113 166-215 (283)
52 PRK12872 ubiA prenyltransferas 25.8 5E+02 0.011 23.4 14.6 36 198-244 172-207 (285)
53 PF10776 DUF2600: Protein of u 25.6 1.6E+02 0.0035 27.8 5.5 42 173-218 35-76 (330)
54 PRK12848 ubiA 4-hydroxybenzoat 25.1 5.2E+02 0.011 23.5 14.2 51 67-117 49-104 (282)
55 PRK12878 ubiA 4-hydroxybenzoat 25.0 1.8E+02 0.0039 27.2 5.8 78 154-235 28-119 (314)
56 KOG2802 Membrane protein HUEL 25.0 1.4E+02 0.003 28.8 4.9 46 166-215 370-416 (503)
57 PRK12869 ubiA protoheme IX far 24.9 81 0.0017 28.9 3.4 45 73-119 175-219 (279)
58 PRK09573 (S)-2,3-di-O-geranylg 23.5 5.6E+02 0.012 23.2 9.1 77 156-235 3-82 (279)
59 PF06304 DUF1048: Protein of u 23.3 45 0.00098 25.9 1.2 23 201-223 45-67 (103)
60 PRK12870 ubiA 4-hydroxybenzoat 22.5 6.1E+02 0.013 23.3 14.9 54 65-118 51-109 (290)
61 PRK12884 ubiA prenyltransferas 21.4 5E+02 0.011 23.4 8.0 79 155-236 3-83 (279)
62 PHA02603 nrdC.11 hypothetical 20.3 3E+02 0.0065 26.1 6.2 40 274-319 283-323 (330)
63 PRK12883 ubiA prenyltransferas 20.2 6.1E+02 0.013 22.9 8.3 77 155-234 2-81 (277)
No 1
>PLN02890 geranyl diphosphate synthase
Probab=100.00 E-value=3e-72 Score=534.94 Aligned_cols=320 Identities=85% Similarity=1.209 Sum_probs=288.2
Q ss_pred CCCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 020765 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (321)
Q Consensus 2 ~~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDD 81 (321)
+.+..|.+.++++|++..|.+|||+||.|++++++++|...+...|++..+..+.+..++++.+|+++||||+|||||||
T Consensus 103 v~~~~~~l~~a~~y~~~~G~~GKrlRP~LvLL~a~a~g~~~~~~~~~~~~~~~~~~~~~~~~~~AaavEliH~ASLVHDD 182 (422)
T PLN02890 103 VVAEVPKLASAAEYFFKVGVEGKRFRPTVLLLMATALNVPLPESTEGGVLDIVASELRTRQQNIAEITEMIHVASLLHDD 182 (422)
T ss_pred HccCChHHHHHHHHHHhCCCCCccHhHHHHHHHHHHcCCCcccccccccchhhccchhhhHHHHHHHHHHHHHHHHHHcc
Confidence 45678899999999998776799999999999999998643221111111111223456688999999999999999999
Q ss_pred hcCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHH
Q 020765 82 VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQ 161 (321)
Q Consensus 82 I~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~ 161 (321)
|||++++|||+||+|.+||++.||++||||+++|+..++...+.++++.+++++..+++||++|+.+..+..+++++|++
T Consensus 183 IiD~s~~RRG~pt~~~~~G~~~AIlaGD~Lla~A~~~l~~~~~~~~~~~~s~a~~~l~~Gq~ld~~~~~~~~~s~~~Yl~ 262 (422)
T PLN02890 183 VLDDADTRRGVGSLNVVMGNKLSVLAGDFLLSRACVALAALKNTEVVSLLATAVEHLVTGETMQITSSREQRRSMDYYMQ 262 (422)
T ss_pred cccCCCCcCCCcChhhhcChHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999988889999999999999999999999988777899999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHHHHh
Q 020765 162 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME 241 (321)
Q Consensus 162 ~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~ 241 (321)
++.+|||+||+.||++||+++|.+++..+.++.||.++|+||||+||++||+++++.+|||.++||++||+|+|++++++
T Consensus 263 ~i~~KTa~Lf~~s~~~gAilaga~~~~~~~l~~fG~~lGlAFQI~DDiLD~~g~~~~~GK~~g~DL~eGk~TlPvl~al~ 342 (422)
T PLN02890 263 KTYYKTASLISNSCKAVAILAGQTAEVAVLAFEYGRNLGLAFQLIDDVLDFTGTSASLGKGSLSDIRHGVITAPILFAME 342 (422)
T ss_pred HHHHhHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhhhCCCchhhHhcCCccHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 020765 242 EFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 321 (321)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~~~~~~R~~ 321 (321)
..+++.+++.+...++++++++.+++.++|++++|++++++|.++|.+.|+.+|+++.+++-+.++.|..|++++++|+|
T Consensus 343 ~~~~l~~~l~~~~~~~~~v~~~~~~i~~~gaie~a~~la~~~~~~A~~~L~~lp~s~~~~~~~~r~~L~~L~~~vi~R~k 422 (422)
T PLN02890 343 EFPQLREVVDRGFDNPANVDIALEYLGKSRGIQRTRELAREHANLAAAAIESLPETDDEDVLTSRRALIDLTERVITRNK 422 (422)
T ss_pred cCHHHHHHHhcccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHHHHhccC
Confidence 88888889988888889999999999999999999999999999999999999998733333368999999999999986
No 2
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=100.00 E-value=1.9e-70 Score=511.89 Aligned_cols=298 Identities=46% Similarity=0.712 Sum_probs=279.7
Q ss_pred CCCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 020765 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (321)
Q Consensus 2 ~~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDD 81 (321)
+.+.+|.+.++++|++..| |||+||.|++++++++|+... ..+....+|+++||||+|||||||
T Consensus 25 ~~~~~~~l~~~~~~~~~~g--GKrlRp~l~ll~~~~~~~~~~--------------~~~~~~~~A~avEliH~asLiHDD 88 (322)
T TIGR02749 25 VGARHPILYAAAEHLFSAG--GKRLRPAIVLLVSRATAEQQE--------------LTPRHRRLAEITEMIHTASLVHDD 88 (322)
T ss_pred hCCCChHHHHHHHHHHHCC--CchHHHHHHHHHHHHcCCCcc--------------ccHHHHHHHHHHHHHHHHHHHHcc
Confidence 3467888999999999989 999999999999999875321 123477899999999999999999
Q ss_pred hcCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHH
Q 020765 82 VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQ 161 (321)
Q Consensus 82 I~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~ 161 (321)
|||+|++|||+||+|++||++.||++||||+++|+..+++.++.++++.+++++.+++.||++|+.+..+...++++|++
T Consensus 89 iiD~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~~~~~~~~~~~~~~~y~~ 168 (322)
T TIGR02749 89 VIDESDTRRGIETVHSLFGTRVAVLAGDFLFAQASWYLANLENLEVVKLISKVITDFAEGEIKQGLNQFDSDLSLEDYLE 168 (322)
T ss_pred cccCccccCCCccHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999988888999999999999999999999877666789999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHHHHh
Q 020765 162 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME 241 (321)
Q Consensus 162 ~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~ 241 (321)
|+.+|||+||++||++|++++|.+++..+.+++||.++|+||||+||++|++++++.+|||.++||++||+|+|++++++
T Consensus 169 ~~~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~G~~lG~aFQi~DDild~~~~~~~~GK~~g~Dl~~Gk~Tlp~l~al~ 248 (322)
T TIGR02749 169 KSFYKTASLVAASSKAAAVLSDVPSQVANDLYEYGKHLGLAFQVVDDILDFTGSTEQLGKPAGSDLMKGNLTAPVLFALE 248 (322)
T ss_pred HHHccHHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHhhCCChhHHHhCCCchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 020765 242 EFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 321 (321)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~~~~~~R~~ 321 (321)
..+.+.+++.+...++++++++.+++.++|+++++++++++|.++|++.|+.+|+++ .++.|..|++++++|+.
T Consensus 249 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~------~~~~L~~l~~~~~~R~~ 322 (322)
T TIGR02749 249 EEPKLSELIEREFSQKGDLEQALSLVRKSGGIKKARELAKEQAQLALQSLSFLPPSP------PREALKELVHFVLSRLY 322 (322)
T ss_pred cChHHHHHHHhccCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhcCC
Confidence 888888888888888899999999999999999999999999999999999999988 89999999999999974
No 3
>CHL00151 preA prenyl transferase; Reviewed
Probab=100.00 E-value=1.1e-69 Score=507.57 Aligned_cols=297 Identities=41% Similarity=0.657 Sum_probs=277.6
Q ss_pred CCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 020765 3 VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82 (321)
Q Consensus 3 ~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI 82 (321)
.+.+|.+.++++|++..| |||+||.||+++++++|++.+. ...++.+|+++|++|+||||||||
T Consensus 27 ~~~~~~l~~~~~~~~~~g--GKr~Rp~L~ll~~~~~~~~~~~--------------~~~~~~~A~aiEllH~asLiHDDi 90 (323)
T CHL00151 27 GSGHPILYAAAKHLFSAG--GKRIRPAIVLLVAKATGGNMEI--------------KTSQQRLAEITEIIHTASLVHDDV 90 (323)
T ss_pred CCCChhHHHHHHHHHhcC--CccHHHHHHHHHHHHcCCCccc--------------cHHHHHHHHHHHHHHHHHHHHccc
Confidence 456788999999999989 9999999999999999864321 134678999999999999999999
Q ss_pred cCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHHH
Q 020765 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQK 162 (321)
Q Consensus 83 ~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~~ 162 (321)
||+|++|||+||+|.+||++.||++||||+++|+..+++..+..+++.+++++..++.||..|..+..+...++++|++|
T Consensus 91 ~D~s~~RRG~pt~h~~~G~~~Ail~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~yl~~ 170 (323)
T CHL00151 91 IDECSIRRGIPTVHKIFGTKIAVLAGDFLFAQSSWYLANLNNLEVVKLISKVITDFAEGEIRQGLVQFDTTLSILNYIEK 170 (323)
T ss_pred ccCccccCCCccHHHHhCCcchhhhHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999888888899999999999999999987766667899999999
Q ss_pred HhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHHHHhh
Q 020765 163 TYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE 242 (321)
Q Consensus 163 ~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~ 242 (321)
+.+|||+||++||.+|++++|.+++..+.++.||.++|+||||+||++|++++++.+|||.|+||++||+|||++++++.
T Consensus 171 i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~G~~lG~aFQi~DDilD~~~~~~~~GK~~g~Dl~eGk~Tlp~l~al~~ 250 (323)
T CHL00151 171 SFYKTASLIAASCKAAALLSDADEKDHNDFYLYGKHLGLAFQIIDDVLDITSSTESLGKPIGSDLKNGNLTAPVLFALTQ 250 (323)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccChhhhCCCchhhHhcCchHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 020765 243 FPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 321 (321)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~~~~~~R~~ 321 (321)
.+++.+++.+...++++++++.+++.++|+++++++++++|.++|.+.|+.+|.++ .++.|..+++++++|+.
T Consensus 251 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L~~l~~~~~~R~~ 323 (323)
T CHL00151 251 NSKLAKLIEREFCETKDISQALQIIKETNGIEKAKDLALEHMQAAIQCLKFLPPSS------AKDSLIEIANFIINRLN 323 (323)
T ss_pred ChHHHHHHHHhcCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhccC
Confidence 88888888877778899999999999999999999999999999999999999988 88999999999999974
No 4
>PLN02857 octaprenyl-diphosphate synthase
Probab=100.00 E-value=7.5e-70 Score=518.84 Aligned_cols=301 Identities=42% Similarity=0.677 Sum_probs=280.0
Q ss_pred CCCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 020765 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (321)
Q Consensus 2 ~~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDD 81 (321)
+.+.+|.+.++++|++..| |||+||.|++++++++|..... ....+..+.+|+++||||+|||||||
T Consensus 116 ~~~~~~~l~~~~~~~~~~g--GKriRP~Lvll~a~a~g~~~g~-----------~~~~~~~~~lAaaiEliH~ASLIHDD 182 (416)
T PLN02857 116 VGAENPVLMSAAEQIFGAG--GKRMRPALVFLVSRATAELAGL-----------KELTTEHRRLAEITEMIHTASLIHDD 182 (416)
T ss_pred hccCchHHHHHHHHHHhCC--CccHhHHHHHHHHHHhccccCC-----------CcchHHHHHHHHHHHHHHHHHHHHCc
Confidence 3456788999999999999 9999999999999998631100 01124578899999999999999999
Q ss_pred hcCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHH
Q 020765 82 VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQ 161 (321)
Q Consensus 82 I~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~ 161 (321)
|||+|++|||+||+|.+||++.|||+||||+++|++.+++.++.++++.+++++..++.||+.|+.+..+...++++|++
T Consensus 183 I~D~s~~RRG~pt~h~~~G~~~AIlaGD~L~a~A~~~la~~~~~~~~~~~s~~~~~l~~Gei~q~~~~~~~~~s~~~Yl~ 262 (416)
T PLN02857 183 VLDESDMRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLANLDNLEVIKLISQVIKDFASGEIKQASSLFDCDVTLDEYLL 262 (416)
T ss_pred cccCCcccCCCCCccccCCcceeeeHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhHHHHHhcccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999988888999999999999999999998877766789999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHHHHh
Q 020765 162 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME 241 (321)
Q Consensus 162 ~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~ 241 (321)
|+++|||+||+.||++|++++|.+++..+.+.+||.++|+||||+||++||+++++.+|||.++||++||+|+|++++++
T Consensus 263 ~i~~KTa~L~~~a~~~gallaga~~~~~~~l~~fG~~LGiAFQI~DDiLD~~~~~~~~GK~~g~DL~eGK~TlPli~al~ 342 (416)
T PLN02857 263 KSYYKTASLIAASTKSAAIFSGVDSSVKEQMYEYGKNLGLAFQVVDDILDFTQSTEQLGKPAGSDLAKGNLTAPVIFALE 342 (416)
T ss_pred HHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHhCCCcchhhhcCCccHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 020765 242 EFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 321 (321)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~~~~~~R~~ 321 (321)
+.+++.+++.+...+++++++++++++++|+++++++++++|.++|++.|+.+|+++ .++.|..|++++++|.+
T Consensus 343 ~~~~l~~~l~~~~~~~~~~~~~~~lv~~~Ggie~a~~~a~~~~~~A~~~L~~Lp~~~------~~~~L~~L~~~~~~R~~ 416 (416)
T PLN02857 343 KEPELREIIESEFCEEGSLEEAIELVNEGGGIERAQELAKEKADLAIQNLECLPRGA------FRSSLEDMVDYNLERIY 416 (416)
T ss_pred cChHHHHHHhhccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHhccC
Confidence 888899999888888899999999999999999999999999999999999999988 88999999999999975
No 5
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=100.00 E-value=2.1e-69 Score=504.77 Aligned_cols=292 Identities=29% Similarity=0.503 Sum_probs=269.3
Q ss_pred CCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 020765 3 VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82 (321)
Q Consensus 3 ~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI 82 (321)
.+.+|.+.+++.|++..| |||+||.|++++++++|.+. +.+..+|+++|+||+||||||||
T Consensus 25 ~~~~~~l~~~~~~~~~~g--GKriRp~L~ll~~~~~~~~~-----------------~~~~~~A~aiEliH~asLiHDDI 85 (319)
T TIGR02748 25 QAEHPVLSEASLHLLEAG--GKRIRPVFVLLAGKFGDYDL-----------------DAIKHVAVALELIHMASLVHDDV 85 (319)
T ss_pred ccCchHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCCH-----------------HHHHHHHHHHHHHHHHHHHhccc
Confidence 346788999999999989 99999999999999876421 34788999999999999999999
Q ss_pred cCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHHH
Q 020765 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQK 162 (321)
Q Consensus 83 ~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~~ 162 (321)
+|+|++|||+||+|.+||++.||++||||++++++.+++.+..++++.+++++..++.||.+|+.+..+...++++|++|
T Consensus 86 ~D~s~~RRg~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~~~~~~~~~~~~~~~Y~~~ 165 (319)
T TIGR02748 86 IDDADLRRGRPTIKSKWGNRIAMYTGDYLFAKSLETMTEIKDPRAHQILSHTIVEVCRGEIEQIKDKYNFDQNLRTYLRR 165 (319)
T ss_pred cCCCCCCCCCcCHHHHhChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999888888999999999999999999998876667899999999
Q ss_pred HhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHHHHhh
Q 020765 163 TYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE 242 (321)
Q Consensus 163 ~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~ 242 (321)
+++|||+||++||.+|++++|.+++.++.+++||.++|+||||+||++||+++++.+|||.++||++||+|+|++++++.
T Consensus 166 i~~KTa~L~~~~~~~ga~~ag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~~~Dl~~gk~Tlp~l~al~~ 245 (319)
T TIGR02748 166 IKRKTALLIAASCQLGAIASGANEAIVKKLYWFGYYVGMSYQITDDILDFVGTEEELGKPAGGDLLQGNVTLPVLYAMED 245 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHhhCCChhhHHhCCCchHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred Ch---HHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhc
Q 020765 243 FP---QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITR 319 (321)
Q Consensus 243 ~~---~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~~~~~~R 319 (321)
.+ .+..++.. .++++++++++++.++|++++++.++++|.++|.+.|+.+|.++ .++.|..+++++++|
T Consensus 246 ~~~~~~l~~~~~~--~~~~~~~~~~~~i~~~g~~~~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L~~l~~~~~~R 317 (319)
T TIGR02748 246 PFLKKRIEQVLEE--TTAEEMEPLIEEVKKSDAIEYAYAVSDRYLKKALELLDGLPDGR------AKKPLQEIAKYIGKR 317 (319)
T ss_pred cchhHHHHHHHcC--CCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHHhc
Confidence 43 23334432 26788999999999999999999999999999999999999988 899999999999999
Q ss_pred cC
Q 020765 320 NK 321 (321)
Q Consensus 320 ~~ 321 (321)
++
T Consensus 318 ~~ 319 (319)
T TIGR02748 318 KY 319 (319)
T ss_pred cC
Confidence 75
No 6
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=100.00 E-value=3.2e-69 Score=503.48 Aligned_cols=294 Identities=34% Similarity=0.538 Sum_probs=269.6
Q ss_pred CCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 020765 3 VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82 (321)
Q Consensus 3 ~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI 82 (321)
.+..|.+.++.+|.+..| |||+||.|++++++++|++. +....+|+++|+||+||||||||
T Consensus 26 ~~~~~~l~~~~~~~~~~~--GKrlRp~l~ll~~~~~g~~~-----------------~~~~~~A~avEllH~asLiHDDI 86 (323)
T PRK10888 26 NSDVQLINQLGYYIISGG--GKRIRPMIAVLAARAVGYQG-----------------NAHVTIAALIEFIHTATLLHDDV 86 (323)
T ss_pred cccchhHHHHHHHHHhCC--CchHHHHHHHHHHHHcCCCh-----------------HHHHHHHHHHHHHHHHHHHHccc
Confidence 356778999999999989 99999999999999997532 23678999999999999999999
Q ss_pred cCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHHH
Q 020765 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQK 162 (321)
Q Consensus 83 ~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~~ 162 (321)
||+|++|||+||+|.+||++.||++||||++.+++.+++.+..+++..+++++..+++||.+|+.+..+..+++++|++|
T Consensus 87 ~D~s~~RRG~pt~~~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~~ 166 (323)
T PRK10888 87 VDESDMRRGKATANAAFGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMNVNDPDITEENYMRV 166 (323)
T ss_pred ccCCcccCCCCCHHHHhCccHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999888889999999999999999999998766667899999999
Q ss_pred HhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHHHHhh
Q 020765 163 TYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE 242 (321)
Q Consensus 163 ~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~ 242 (321)
+.+|||+||++||.+|++++|.+++.++.++.||+++|+||||+||++||+++++.+|||.|+||++||+|||++++++.
T Consensus 167 i~~KTa~lf~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~Tlp~l~al~~ 246 (323)
T PRK10888 167 IYSKTARLFEAAAQCSGILAGCTPEQEKGLQDYGRYLGTAFQLIDDLLDYSADGETLGKNVGDDLNEGKPTLPLLHAMHH 246 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHhhCCCchhhhhcCCchHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C-hHHHHHHHccc---CChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHh
Q 020765 243 F-PQLRTVVEQGF---EDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVIT 318 (321)
Q Consensus 243 ~-~~~~~~l~~~~---~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~~~~~~ 318 (321)
. ++.++.+.... ..+++++++++++..+|+++++++++++|.++|.+.|+.+|+++ .++.|..+++++++
T Consensus 247 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~e~~~~~a~~~~~~A~~~L~~lp~~~------~~~~L~~l~~~~~~ 320 (323)
T PRK10888 247 GTPEQAAMIRTAIEQGNGRHLLEPVLEAMNACGSLEWTRQRAEEEADKAIAALQVLPDTP------WREALIGLAHIAVQ 320 (323)
T ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHHh
Confidence 3 44444443222 23467899999999999999999999999999999999999988 89999999999999
Q ss_pred ccC
Q 020765 319 RNK 321 (321)
Q Consensus 319 R~~ 321 (321)
|++
T Consensus 321 R~~ 323 (323)
T PRK10888 321 RDR 323 (323)
T ss_pred CcC
Confidence 974
No 7
>COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]
Probab=100.00 E-value=5.6e-69 Score=501.93 Aligned_cols=296 Identities=35% Similarity=0.528 Sum_probs=271.0
Q ss_pred CCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 020765 4 AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVL 83 (321)
Q Consensus 4 ~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI~ 83 (321)
+.++.+.+++.|++.+| |||+||.+++++++++|...+. ..+.+..+|++|||+|++||||||||
T Consensus 25 ~~~~~l~~a~~~~~~aG--GKrlRP~l~l~~~~~~~~~~~~-------------~~~~~~~~aaavEliH~~SLiHDDvm 89 (322)
T COG0142 25 SDPELLLEAMRYLLLAG--GKRLRPLLVLLAAEALGIDLET-------------GGNDALDLAAAIELIHTASLIHDDLM 89 (322)
T ss_pred cccHHHHHHHHHHHhcC--CccHhHHHHHHHHHHcCCCccc-------------chhhHHHHHHHHHHHHHHHHHHhhcc
Confidence 57889999999999999 9999999999999999832221 13458999999999999999999999
Q ss_pred CCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHH
Q 020765 84 DDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN--TEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQ 161 (321)
Q Consensus 84 D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~--~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~ 161 (321)
|+|++|||+||+|.+||++.||++||+|++.||+++++..+ ..++..+++++..++.||.+|+.+..+. +|+++|++
T Consensus 90 D~s~~RRG~pt~~~~~g~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~-~t~e~y~~ 168 (322)
T COG0142 90 DDDDLRRGKPTVHAKFGEATAILAGDALLAAAFELLSKLGSEALEAIKALAEAINGLCGGQALDLAFENKP-VTLEEYLR 168 (322)
T ss_pred cCCCccCCCCCchhHhccHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhHHHHHHccCCC-CCHHHHHH
Confidence 99999999999999999999999999999999999999877 8899999999999999999999998765 99999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHHHHh
Q 020765 162 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME 241 (321)
Q Consensus 162 ~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~ 241 (321)
|+++|||.||+.+|++|+++++++++..+.+..||.++|+||||+||++|++++++.+|||+|+|+++||+|||++++++
T Consensus 169 ~i~~KTa~L~~~a~~~ga~la~~~~~~~~~l~~~g~~lGlaFQi~DDiLD~~~d~~~lGK~~g~Dl~~gK~T~p~l~~l~ 248 (322)
T COG0142 169 VIELKTAALFAAAAVLGAILAGADEELLEALEDYGRNLGLAFQIQDDILDITGDEEELGKPVGSDLKEGKPTLPVLLALE 248 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHHHHHHHhhcCCCChHHhCCCcchHHHcCCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 020765 242 EFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 321 (321)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~~~~~~R~~ 321 (321)
..++....+........+++++++++.++|+++++..++..|.++|.+.|+.+|+++ .++.|..+++++++|++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~~~~a~~~L~~l~~~~------~~~~L~~la~~i~~R~~ 322 (322)
T COG0142 249 KANEDQKLLRILLEGGGEVEEALELLRKSGAIEYAKNLAKTYVEKAKEALEKLPDSE------AKEALLELADFIIKRKY 322 (322)
T ss_pred cCchhhHHHHHHhhcchHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHHhccC
Confidence 864322233333322239999999999999999999999999999999999999777 89999999999999974
No 8
>PRK10581 geranyltranstransferase; Provisional
Probab=100.00 E-value=2.3e-63 Score=459.06 Aligned_cols=258 Identities=29% Similarity=0.431 Sum_probs=231.6
Q ss_pred chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--c
Q 020765 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV--L 83 (321)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI--~ 83 (321)
++.+.+++.|++..| |||+||.|++++++++|.+. +....+|++||++|+|||||||| |
T Consensus 29 ~~~l~~~~~~~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~avEliH~aSLiHDDip~~ 89 (299)
T PRK10581 29 NTPVVEAMQYGALLG--GKRLRPFLVYATGQMFGVST-----------------NTLDAPAAAVECIHAYSLIHDDLPAM 89 (299)
T ss_pred chHHHHHHHHHHhcC--cccHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 567999999999989 99999999999999997532 23678999999999999999999 9
Q ss_pred CCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCC--------HHHHHHHHHH--HHHHHhhhHhhhcccCCCC
Q 020765 84 DDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN--------TEVVTLLATV--VEHLVTGETMQMTTSSDQR 153 (321)
Q Consensus 84 D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~--------~~~~~~~~~~--~~~~~~Gq~~d~~~~~~~~ 153 (321)
|+|++|||+||+|.+||++.||++||+|++.|++.+++... .++++.++.+ +..++.||.+|+.+... .
T Consensus 90 D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~ld~~~~~~-~ 168 (299)
T PRK10581 90 DDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAPMPEVSDRDRISMISELASASGIAGMCGGQALDLEAEGK-Q 168 (299)
T ss_pred cCCCccCCCcChHHHhCcchHHHHHHHHHHHHHHHHHhCCCccCChHHHHHHHHHHHHhcccchhhHhhHHHHhccCC-C
Confidence 99999999999999999999999999999999999986532 1345555553 46799999999988654 6
Q ss_pred CCHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccC
Q 020765 154 CSMDYYMQKTYYKTASLISNSCKAIALLAGQTA-EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII 232 (321)
Q Consensus 154 ~s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~-~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~ 232 (321)
.++++|++|+.+|||+||.+||.+|++++|.++ +.++.+++||.++|+||||+||++|++++++.+|||.|+|+++||+
T Consensus 169 ~~~~~y~~i~~~KTa~L~~~~~~~gailag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~ 248 (299)
T PRK10581 169 VPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDRYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKS 248 (299)
T ss_pred CCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCC
Confidence 799999999999999999999999999999864 5788999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHH
Q 020765 233 TAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDL 312 (321)
Q Consensus 233 Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l 312 (321)
|||++++ ++++++.+++|.++|.+.|+.+|+++. .++.|..|
T Consensus 249 T~p~l~~---------------------------------~e~a~~~a~~~~~~A~~~l~~l~~~~~-----~~~~L~~l 290 (299)
T PRK10581 249 TYPALLG---------------------------------LEQARKKARDLIDDARQSLDQLAAQSL-----DTSALEAL 290 (299)
T ss_pred CHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhCcCCch-----hHHHHHHH
Confidence 9999994 568889999999999999999998761 37889999
Q ss_pred HHHHHhccC
Q 020765 313 THRVITRNK 321 (321)
Q Consensus 313 ~~~~~~R~~ 321 (321)
++++++|+|
T Consensus 291 ~~~~~~R~~ 299 (299)
T PRK10581 291 ANYIIQRDK 299 (299)
T ss_pred HHHHHhccC
Confidence 999999986
No 9
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=100.00 E-value=6.7e-60 Score=429.82 Aligned_cols=255 Identities=40% Similarity=0.577 Sum_probs=238.9
Q ss_pred CchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 020765 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLD 84 (321)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI~D 84 (321)
.++.+.++++|++..| ||++||.+++++++++|++. .+.+..+|+++|++|+||||||||||
T Consensus 2 ~~~~l~~~~~~~~~~~--GK~~Rp~l~~~~~~~~g~~~----------------~~~~~~la~aiEllh~asLIhDDI~D 63 (259)
T cd00685 2 EVELLREALRYLLLAG--GKRLRPLLVLLAARALGGPE----------------LEAALRLAAAIELLHTASLVHDDVMD 63 (259)
T ss_pred CchHHHHHHHHHHHcC--CccHhHHHHHHHHHHhCCCc----------------hHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 4577999999999888 99999999999999998642 13478899999999999999999999
Q ss_pred CCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHH
Q 020765 85 DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN---TEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQ 161 (321)
Q Consensus 85 ~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~---~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~ 161 (321)
+|++|||+||+|.+||+..|||+||+|++.+++.+++... .++++.+++++..++.||++|+.+..+..+++++|++
T Consensus 64 ~s~~RRG~p~~~~~~G~~~Ail~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~GQ~~d~~~~~~~~~~~~~y~~ 143 (259)
T cd00685 64 NSDLRRGKPTVHKVFGNATAILAGDYLLARAFELLARLGNPYYPRALELFSEAILELVEGQLLDLLSEYDTDVTEEEYLR 143 (259)
T ss_pred CCcccCCCCcHHHHhCcccHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHH
Confidence 9999999999999999999999999999999999998776 7899999999999999999999987766789999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHHHHh
Q 020765 162 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME 241 (321)
Q Consensus 162 ~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~ 241 (321)
|+.+|||+||..+|++|+++++.+++..+.++.||.++|++|||+||++|++++++.+||+.++||++||+|||+++++
T Consensus 144 ~~~~KT~~l~~~~~~~~a~l~~~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~gK~~~~Di~~gk~T~~~~~~l- 222 (259)
T cd00685 144 IIRLKTAALFAAAPLLGALLAGADEEEAEALKRFGRNLGLAFQIQDDILDLFGDPETLGKPVGSDLREGKCTLPVLLAL- 222 (259)
T ss_pred HHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHCCCcchHHHcCCchHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred hChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhc
Q 020765 242 EFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITR 319 (321)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~~~~~~R 319 (321)
++.++.|.++|...|+.+|.+. .+..|..+++++++|
T Consensus 223 -----------------------------------~~~~~~~~~~a~~~l~~~~~~~------~~~~l~~~~~~~~~r 259 (259)
T cd00685 223 -----------------------------------RELAREYEEKALEALKALPESP------AREALRALADFILER 259 (259)
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHHcC
Confidence 6889999999999999999876 688999999999887
No 10
>KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=3.7e-60 Score=438.03 Aligned_cols=288 Identities=44% Similarity=0.638 Sum_probs=270.8
Q ss_pred CchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--
Q 020765 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV-- 82 (321)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI-- 82 (321)
.++.+..+++|.+..+ ||++||.+|++.++++|... ...++.+|+++||||++|||||||
T Consensus 91 ~~~~i~~a~ry~~la~--gKr~rP~l~~~~~e~~~~g~----------------~~~q~~~A~i~EMIHtaSLIHDDv~~ 152 (384)
T KOG0776|consen 91 EPLLISEAMRYLLLAG--GKRVRPLLCLAACELVGSGD----------------ESSQRSLAEIVEMIHTASLIHDDVPC 152 (384)
T ss_pred ccchhHHHHHHHHHhc--ccccCchhhhhHHHhccccc----------------cHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 3567888899999999 99999999999999998311 134889999999999999999999
Q ss_pred cCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccC---C-CCCCHHH
Q 020765 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSS---D-QRCSMDY 158 (321)
Q Consensus 83 ~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~---~-~~~s~~~ 158 (321)
||++++|||+||.|+.||+++||++||||+++|++.++.+.++.+++.+++++.+++.|++.+..... . ....+++
T Consensus 153 mD~~d~RRGkpt~h~vfG~k~AvLaGD~LLa~A~~~la~l~n~~v~elm~~aI~dLv~ge~~~~~~~~~~~d~~~~~~e~ 232 (384)
T KOG0776|consen 153 MDDADLRRGKPTNHKVFGNKMAVLAGDALLALASEHLASLENPVVVELMASAIADLVRGEFTQGLVAGEGLDLDDVGLEY 232 (384)
T ss_pred ccccccccCCCCcchhhcchhhhhhhHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhhhhcccccccccccCCcchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987763 2 2357899
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHH
Q 020765 159 YMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 238 (321)
Q Consensus 159 y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 238 (321)
|+.+..+|||+|++.+|++|++++|.+++.++.+++||+++|++||+.||++|++...+.+||+.|.|+..|+.|+|+++
T Consensus 233 ~e~~~~~KTAsLla~Sc~~~aILgg~s~ev~e~~~~yGR~lGL~fQvvDDildftkss~elGK~ag~Dl~~g~lT~P~Lf 312 (384)
T KOG0776|consen 233 LEFKTLLKTASLLAKSCVAAAILGGGSEEVIEAAFEYGRCLGLAFQVVDDILDFTKSSEELGKTAGKDLKAGKLTAPVLF 312 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccCcccchhhcCcchhhhhhhccccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHh
Q 020765 239 AMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVIT 318 (321)
Q Consensus 239 al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~~~~~~ 318 (321)
++++.|++.+.+.+.+.++.+.++..+.+. ++..|..++++|.++|.+.|+.+|.++ +|+.|.+|+..+..
T Consensus 313 ~~e~~pe~~e~l~~~~~e~~~~~~~~k~v~---~v~~a~~la~~~~~~Al~~l~~~p~s~------ar~aL~~l~~~~~~ 383 (384)
T KOG0776|consen 313 ALEKSPELREKLEREFSEPLDGFDADKAVP---GVALAKYLARRHNNKALEALQSLPRSE------ARSALENLVLAVLT 383 (384)
T ss_pred hhhhChHHHHHHHHhccccchhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHhCCCCch------HHHHHHHHHHHHhc
Confidence 999999999999999999988888888887 999999999999999999999999999 99999999999987
Q ss_pred c
Q 020765 319 R 319 (321)
Q Consensus 319 R 319 (321)
|
T Consensus 384 r 384 (384)
T KOG0776|consen 384 R 384 (384)
T ss_pred C
Confidence 7
No 11
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=100.00 E-value=2.7e-58 Score=419.43 Aligned_cols=249 Identities=33% Similarity=0.544 Sum_probs=218.0
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 020765 11 SAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRR 90 (321)
Q Consensus 11 ~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI~D~s~~RR 90 (321)
+++.|++..| |||+||.|++++++++|++ .+.+..+|+++||+|+||||||||+|+|++||
T Consensus 3 ~~~~~~~~~~--GK~~Rp~l~~~~~~~~~~~-----------------~~~~~~~a~avEliH~asLIhDDI~D~s~~RR 63 (260)
T PF00348_consen 3 EPARYYILRG--GKRIRPLLVLLAAEALGGD-----------------PEKAIPLAAAVELIHAASLIHDDIIDNSDLRR 63 (260)
T ss_dssp HHHHHHHHSS--SCHHHHHHHHHHHHHTTCH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHTTCSEET
T ss_pred HHHHHHhhCC--CccHHHHHHHHHHHHhCCC-----------------HHHHHHHHHHHHHHHHHHHHhhhhhcccccCC
Confidence 5677788879 9999999999999999842 35688999999999999999999999999999
Q ss_pred CcCchhhhcChhHHHHHHHHHHHHHHHHHHcCC----CH---HHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHHHH
Q 020765 91 GIGSLNFVMGNKLAVLAGDFLLSRACVALASLK----NT---EVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKT 163 (321)
Q Consensus 91 G~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~----~~---~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~~~ 163 (321)
|+||+|.+||++.|||+||+|++.|+..++... .. .+.+.+...+.....||..|+.+... ..++++|++|+
T Consensus 64 G~pt~~~~~G~~~Ail~gd~ll~~a~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~q~~d~~~~~~-~~~~~~y~~i~ 142 (260)
T PF00348_consen 64 GKPTVHKKFGNAIAILAGDYLLALAFELLARLGHFDPSERVLRILELFIEALIEGEIGQALDLANEDK-DPTEEEYLEII 142 (260)
T ss_dssp TEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-STSHHHHHHHH
T ss_pred CCccccccccccchhhhchHHHHHHHHHHHHhhcccchHHHHHHHHHHHHhcccceeehhhccccccc-cccHHHHHHHH
Confidence 999999999999999999999999999998876 12 34445555666677778888887655 78999999999
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHHHHhhC
Q 020765 164 YYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEF 243 (321)
Q Consensus 164 ~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~~ 243 (321)
++|||+||++||++|++++|.+++..+.++.||.++|++|||+||++|++++++.+||+.++||++||+|||+++++++.
T Consensus 143 ~~KTg~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~~d~~~~~~~~gK~~~~Dl~~gk~Tlp~~~al~~~ 222 (260)
T PF00348_consen 143 RLKTGSLFALACQLGAILAGADEEQIEALREFGRHLGIAFQIRDDLLDLFGDEEELGKPVGSDLKEGKPTLPVLHALERA 222 (260)
T ss_dssp HHHTHHHHHHHHHHHHHHTTSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHSSTTTHHHHTTTSSHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHhhhhhhhhccCcHHHhcccchhHHhcCcccHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred h-HHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHH
Q 020765 244 P-QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELA 280 (321)
Q Consensus 244 ~-~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~ 280 (321)
+ +.++++... ....+.+.+.+.+..++.++++++++
T Consensus 223 ~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (260)
T PF00348_consen 223 REELRELLQEA-YGKEDSEEALEIIAQTGALEYTRKFM 259 (260)
T ss_dssp HHHHHHHHHHH-HHHSHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHH-HcccchHHHHHHHHHHHHHHHHHhhc
Confidence 4 455555443 33446677788888888898888765
No 12
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=100.00 E-value=2e-44 Score=323.40 Aligned_cols=235 Identities=40% Similarity=0.603 Sum_probs=210.5
Q ss_pred hHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCchhhh-cChhHH
Q 020765 26 FRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFV-MGNKLA 104 (321)
Q Consensus 26 ~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI~D~s~~RRG~pt~~~~-~G~~~A 104 (321)
+||.+++++++++|++. +.+..+++++|+||++++|||||+|++..|||+|++|.+ ||...|
T Consensus 1 ~r~~~~~~~~~~~~~~~-----------------~~~~~~a~ave~l~~~~li~DDI~D~~~~rrg~~~~~~~~~g~~~a 63 (236)
T cd00867 1 SRPLLVLLLARALGGDL-----------------EAALRLAAAVELLHAASLVHDDIVDDSDLRRGKPTAHLRRFGNALA 63 (236)
T ss_pred CcHHHHHHHHHHcCCCH-----------------HHHHHHHHHHHHHHHHHHHHcccccCCccCCCCccHhHHhhCHhHH
Confidence 59999999999998632 457889999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhCC
Q 020765 105 VLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQ 184 (321)
Q Consensus 105 il~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~~~~~KTa~l~~~~~~~ga~lag~ 184 (321)
++.||++++.++..+.+....++.+.+++.+..++.||.+|+.+..+...|+++|++++++|||++|+.+|..++++++.
T Consensus 64 i~~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~Dl~~~~~~~~t~~~y~~~~~~Kta~l~~~~~~~~~~~~~~ 143 (236)
T cd00867 64 ILAGDYLLARAFQLLARLGYPRALELFAEALRELLEGQALDLEFERDTYETLDEYLEYCRYKTAGLVGLLCLLGAGLSGA 143 (236)
T ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHhccHHHHHHHHHHHHHHcCc
Confidence 99999999999999988777788999999999999999999988765578999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHHHHhhChHHHHHHHcccCChhHHHHHH
Q 020765 185 TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIAL 264 (321)
Q Consensus 185 ~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~ 264 (321)
+++..+.+..||.++|+||||+||++|++++.+.+|| .++||++||+|||++++
T Consensus 144 ~~~~~~~~~~~~~~lG~a~Qi~dd~~D~~~d~~~~gk-~~~D~~~gr~tlp~~~~------------------------- 197 (236)
T cd00867 144 DDEQAEALKDYGRALGLAFQLTDDLLDVFGDAEELGK-VGSDLREGRITLPVILA------------------------- 197 (236)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhccccCChHHHCc-cHHHHHcCCchHHHHHH-------------------------
Confidence 9888999999999999999999999999999999999 99999999999999995
Q ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhc
Q 020765 265 EYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITR 319 (321)
Q Consensus 265 ~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~~~~~~R 319 (321)
.+.+.++.+++.+.+..+++... ..+..+..++.++++|
T Consensus 198 ------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~r 236 (236)
T cd00867 198 ------------RERAAEYAEEAYAALEALPPSLP----RARRALIALADFLYRR 236 (236)
T ss_pred ------------HHHHHHHHHHHHHHHHhCCCCch----HHHHHHHHHHHHHHhC
Confidence 45556666777777776655431 1467788888888776
No 13
>KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=5.4e-45 Score=311.82 Aligned_cols=270 Identities=21% Similarity=0.292 Sum_probs=244.4
Q ss_pred chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 020765 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDD 85 (321)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI~D~ 85 (321)
...+.++..|++..+ ||.+|.-|.+.+..++..+ . ++...+..++||+|++||..|||.|+
T Consensus 20 ~~ill~Py~yilq~P--GKqfR~~L~~afNhwl~~P--~---------------dkLaii~~ivemLHNsSLLIDDIEDN 80 (322)
T KOG0777|consen 20 ESILLKPYNYILQKP--GKQFRLNLIVAFNHWLNLP--K---------------DKLAIISQIVEMLHNSSLLIDDIEDN 80 (322)
T ss_pred HHHHhchHHHHHhCc--hHHHHHHHHHHHHHHHhCC--H---------------HHHHHHHHHHHHHhccceeecccccc
Confidence 356788999999977 9999999999999999652 1 34667899999999999999999999
Q ss_pred CCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCC-CCCCHHHHHHHHh
Q 020765 86 ADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSD-QRCSMDYYMQKTY 164 (321)
Q Consensus 86 s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~-~~~s~~~y~~~~~ 164 (321)
|..|||.|+.|..||++..||+++|++.+|.+.+..+..++++++|.+.+.+++.||.+|+.|+.. .++|+++|..|+.
T Consensus 81 s~LRRG~pvaHsIyGvpStINtANY~yFlalekV~qLdhP~a~kifteqLleLHrGQGldIYWRD~~tcPtee~Yk~Mv~ 160 (322)
T KOG0777|consen 81 SPLRRGQPVAHSIYGVPSTINTANYMYFLALEKVSQLDHPNAIKIFTEQLLELHRGQGLDIYWRDFLTCPTEEMYKNMVM 160 (322)
T ss_pred chhhcCCcchhhhccCcchhhhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCcceeeeccCcCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999765 4789999999999
Q ss_pred hhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHHHHhhCh
Q 020765 165 YKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFP 244 (321)
Q Consensus 165 ~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~~~ 244 (321)
.|||.||.++.++.-.++....+ +..+-.-+|+.|||+|||+++-..+....|.++.||.|||.++|+++|+...+
T Consensus 161 ~KTGGLF~La~rLMqlfS~~ked----l~pl~n~LGl~fQIRDDY~NL~~keysenKsFaEDlTEGKfsFP~iHA~~t~~ 236 (322)
T KOG0777|consen 161 NKTGGLFRLALRLMQLFSHHKED----LVPLINLLGLIFQIRDDYLNLKDKEYSENKSFAEDLTEGKFSFPIIHALKTKG 236 (322)
T ss_pred HhcccHHHHHHHHHHHHHhcchh----HHHHHHHHhHhhhhhhhhccchhhhhhcccchhhhhccCccCCcchhhhhcCC
Confidence 99999999999999888865554 55666789999999999999988888889999999999999999999997643
Q ss_pred ---HHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 020765 245 ---QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 298 (321)
Q Consensus 245 ---~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~ 298 (321)
+...++.+...+.+-...++.++++.|+.+|++....+...+|...++....++
T Consensus 237 q~~Qvl~ILrqRT~didiKkyci~~LEd~gSf~YTrn~l~~L~a~a~~~i~~~g~Np 293 (322)
T KOG0777|consen 237 QTEQVLRILRQRTSDIDIKKYCIQILEDTGSFAYTRNFLNQLVAEARSMIKNDGENP 293 (322)
T ss_pred chHHHHHHHHHhhccchHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 466777777777777889999999999999999999999999999999887777
No 14
>KOG0711 consensus Polyprenyl synthetase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1e-43 Score=317.44 Aligned_cols=298 Identities=18% Similarity=0.140 Sum_probs=254.8
Q ss_pred chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 020765 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDD 85 (321)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI~D~ 85 (321)
.+.+...+.|+.. | ||..|+..++.+.+++..+... .++....+..++|+||+|+++.||.|||||+
T Consensus 37 ~~~~~~~L~yN~~-G--GK~nRgl~vv~s~~~L~~~~~l----------~~~~~~~a~~lGw~vElLQaffLiaDDIMDn 103 (347)
T KOG0711|consen 37 TEWLKEVLDYNVI-G--GKLNRGLSVVDSFKALVEPRKL----------DEEELQLALILGWCVELLQAFFLVADDIMDN 103 (347)
T ss_pred HHHHHHHHhccCc-c--cccccchhHHHHHHHhcCccCC----------CHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 3577888889976 8 9999999999999999764322 2355667889999999999999999999999
Q ss_pred CCCCCCcCchhhhcChh-HHHHHHHHHHHHHHHHHHcC----C-CHHHHHHHHHHHHHHHhhhHhhhcccC--CCCCCHH
Q 020765 86 ADTRRGIGSLNFVMGNK-LAVLAGDFLLSRACVALASL----K-NTEVVTLLATVVEHLVTGETMQMTTSS--DQRCSMD 157 (321)
Q Consensus 86 s~~RRG~pt~~~~~G~~-~Ail~Gd~l~~~a~~~l~~~----~-~~~~~~~~~~~~~~~~~Gq~~d~~~~~--~~~~s~~ 157 (321)
|.+|||+||||.+-|++ .|||-+-+|-+....+|.+. . ...+++.+.+....++.||+++-.... ....|++
T Consensus 104 S~tRRGqpCWy~~~gVG~~AINDA~lLea~Iy~lLkk~fr~~~~y~~l~elf~ev~f~T~lGdllt~~~~~~~ls~fsl~ 183 (347)
T KOG0711|consen 104 SKTRRGQPCWYQKPGVGLDAINDAFLLEAAIYKLLKKHFRNIYCYVDLVELFHEVTFQTELGDLLTTPEGNKDLSKFSLE 183 (347)
T ss_pred ccccCCCcceeecCCcchhhhhHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHhhhccccCcccchhHhhhhHH
Confidence 99999999999999995 69997777766555666532 2 357889999999999999776644322 2357889
Q ss_pred HHHHHHhhhhHHH-HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHH
Q 020765 158 YYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAP 235 (321)
Q Consensus 158 ~y~~~~~~KTa~l-~~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp 235 (321)
.|..||.+|||.| |.+|..+|..++| .+.+......++...+|..||+||||||++|||+.+|| +|+||+++||||.
T Consensus 184 ~y~~Iv~~KTa~YsFYLPialAl~~ag~~~~k~~~~~k~v~~~lg~~FQvQDDYLd~fgDp~vtgk-iGtDIqDnKCsWl 262 (347)
T KOG0711|consen 184 KYVFIVEYKTAYYSFYLPVALALLLAGIANLKEHACEKKVLLLLGEYFQVQDDYLDCFGDPEVTGK-IGTDIQDNKCSWL 262 (347)
T ss_pred HHHHHhhccccceeeecHHHHHHHHhhhhhHHHhhhHHHHHHHHHHHHhcchHHHHhcCChhhcCC-CCCccccCceeee
Confidence 9999999999999 9999999999998 45667788999999999999999999999999999999 7999999999999
Q ss_pred HHHHHhh-ChHHHHHHHcccC--ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHH
Q 020765 236 ILFAMEE-FPQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDL 312 (321)
Q Consensus 236 ~l~al~~-~~~~~~~l~~~~~--~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l 312 (321)
+++|+++ ++++.+++...+. +++.++.+..+..+.+..+...+.......+..+.|+.++.+... .+..+..+
T Consensus 263 v~~al~~~~~eq~~~l~~~yg~~~~~~v~~vk~ly~el~l~~~f~~yE~~~~~~Ik~~I~~~~~~~~~----~~~v~t~f 338 (347)
T KOG0711|consen 263 VVKALQRASAEQYKILFENYGKPEAEAVAKVKALYKELHLPALFIEYEEGSYKKIKKLISQVDEDTGV----KVKVGTSF 338 (347)
T ss_pred hHHHHhhcCHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHhhhhHHHHHHHHHHHccCCCcc----hhhhHHHH
Confidence 9999998 6789999987765 667899999999999999999999999999999999998876632 55677789
Q ss_pred HHHHHhccC
Q 020765 313 THRVITRNK 321 (321)
Q Consensus 313 ~~~~~~R~~ 321 (321)
+..+.+|++
T Consensus 339 l~kiykr~k 347 (347)
T KOG0711|consen 339 LNKIYKRSK 347 (347)
T ss_pred HHHHHhhcC
Confidence 999999975
No 15
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1. Superfamily of trans-isoprenyl diphosphate synthases (IPPS) and class I terpene cyclases which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, and diterpenes; and are widely distributed among archaea, bacteria, and eukaryota.The enzymes in this superfamily share the same 'isoprenoid synthase fold' and include several subgroups. The head-to-tail (HT) IPPS catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates. Cyclic monoter
Probab=99.93 E-value=8.5e-24 Score=186.98 Aligned_cols=211 Identities=31% Similarity=0.440 Sum_probs=184.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCCCCcCchhhh---cChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 020765 64 CIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFV---MGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVT 140 (321)
Q Consensus 64 ~lA~~vEllh~asLihDDI~D~s~~RRG~pt~~~~---~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 140 (321)
.++.+++.+|+++++||||+|++..||++|++|.. +|...+++.|+.++..++..+...........+.+.+.+++.
T Consensus 14 ~~~~~~~~~~~~~~~~DDi~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (243)
T cd00385 14 RLRAAVEKLHAASLVHDDIVDDSGTRRGLPTAHLAVAIDGLPEAILAGDLLLADAFEELAREGSPEALEILAEALLDLLE 93 (243)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCCCchhhhhhHHhcCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999988 999999999999999999998877677888999999999999
Q ss_pred hhHhhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccC
Q 020765 141 GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 220 (321)
Q Consensus 141 Gq~~d~~~~~~~~~s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~G 220 (321)
||..|+.+.....++.++|+.+++.|||.++...|..++...+.+......+..++.++|.+||+.||+.|+..+....
T Consensus 94 g~~~d~~~~~~~~~t~~ey~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ql~nDl~~~~~e~~~~- 172 (243)
T cd00385 94 GQLLDLKWRREYVPTLEEYLEYCRYKTAGLVGALCLLGAGLSGGEAELLEALRKLGRALGLAFQLTNDLLDYEGDAERG- 172 (243)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHh-
Confidence 9999999876556899999999999999999999999988887777778889999999999999999999998775321
Q ss_pred CcchhHhhhccCcHHHHHHHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 020765 221 KGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 298 (321)
Q Consensus 221 K~~~~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~ 298 (321)
+|++|+|.+++.+........ ..+..++.++.+...+..+.+++.+.+..+....
T Consensus 173 --------~~~~~l~~~~~~~~~~~~~~~---------------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 227 (243)
T cd00385 173 --------EGKCTLPVLYALEYGVPAEDL---------------LLVEKSGSLEEALEELAKLAEEALKELNELILSL 227 (243)
T ss_pred --------CCchHHHHHHHHHhCChhhHH---------------HHHHHCChHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 589999999988763221111 1677888999999999999999999998876653
No 16
>PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2.5.1.30 from EC) (approximately 230 residues long). The enzyme consists of two subunits, both of which are required for catalysis of heptaprenyl diphosphate synthesis, the precursor for the side chain of the isoprenoid quinone menaquinone-7 (MQ-7) [, ].
Probab=97.78 E-value=0.0012 Score=57.91 Aligned_cols=102 Identities=19% Similarity=0.219 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 020765 61 RQQCIAEITEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVT 140 (321)
Q Consensus 61 ~~~~lA~~vEllh~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 140 (321)
.....+.++-++|.|..+||.|-. ...+.+...-.+ ...|++|||.-+.-+.+|++.++..+++.+++++..+.+
T Consensus 34 ~~~~~~~a~~LVq~aLDtHd~V~~-~~~~~~~~~k~R----QLtVLAGDy~S~~yY~lLA~~~~i~li~~ls~aI~eiNE 108 (212)
T PF07307_consen 34 EAERYALATMLVQIALDTHDEVDN-AGDESEESSKER----QLTVLAGDYYSGLYYQLLAESGDISLIRALSEAIKEINE 108 (212)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcc-ccccccHHHHhh----hhhhhhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 356678888999999999999976 333222221111 579999999999999999999999999999999999999
Q ss_pred hhHhhhcccCCCCCCHHHHHHHH-hhhhHHH
Q 020765 141 GETMQMTTSSDQRCSMDYYMQKT-YYKTASL 170 (321)
Q Consensus 141 Gq~~d~~~~~~~~~s~~~y~~~~-~~KTa~l 170 (321)
....=-... ..+.++|++.+ .-+|+.+
T Consensus 109 ~K~~ly~~~---~~~~e~~~~~~~~ies~l~ 136 (212)
T PF07307_consen 109 LKMSLYQKK---KETAEEYLESVVTIESALF 136 (212)
T ss_pred HHHHHHHhh---hCCHHHHHHHHHHHHHHHH
Confidence 886543322 24777776644 3344443
No 17
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2.5.1.21 from EC (farnesyl-diphosphate farnesyltransferase) (SQS) and Phytoene synthase 2.5.1.32 from EC (PSY) share a number of functional similarities. These similarities are also reflected at the level of their primary structure [, , ]. In particular three well conserved regions are shared by SQS and PSY; they could be involved in substrate binding and/or the catalytic mechanism. SQS catalyzes the conversion of two molecules of farnesyl diphosphate (FPP) into squalene. It is the first committed step in the cholesterol biosynthetic pathway. The reaction carried out by SQS is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of FPP to form presqualene diphosphate; this intermediate is then rearranged in a NADP-dependent reduction, to form squalene: 2 FPP -> presqualene diphosphate + NADP -> squalene SQS is found in eukaryotes. In yeast it is encoded by the ERG9 gene, in mammals by the FDFT1 gene. SQS seems to be membrane-bound. PSY catalyzes the conversion of two molecules of geranylgeranyl diphosphate (GGPP) into phytoene. It is the second step in the biosynthesis of carotenoids from isopentenyl diphosphate. The reaction carried out by PSY is catalyzed in two separate steps: the first is a head-to-head condensation of the two molecules of GGPP to form prephytoene diphosphate; this intermediate is then rearranged to form phytoene. 2 GGPP -> prephytoene diphosphate -> phytoene PSY is found in all organisms that synthesize carotenoids: plants and photosynthetic bacteria as well as some non- photosynthetic bacteria and fungi. In bacteria PSY is encoded by the gene crtB. In plants PSY is localized in the chloroplast.; GO: 0016740 transferase activity, 0009058 biosynthetic process; PDB: 3NRI_A 3NPR_A 2ZCR_A 2ZCP_B 4F6V_A 4EA0_A 3ACW_A 4F6X_A 3VJE_B 3ACX_A ....
Probab=97.18 E-value=0.029 Score=51.09 Aligned_cols=198 Identities=18% Similarity=0.107 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHhhhcCCCCC---CCCcCchhhhcCh-hH-----HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 020765 68 ITEMIHVASLLHDDVLDDADT---RRGIGSLNFVMGN-KL-----AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHL 138 (321)
Q Consensus 68 ~vEllh~asLihDDI~D~s~~---RRG~pt~~~~~G~-~~-----Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~ 138 (321)
++-.+.++....|||.|.... ++-+-.+|+..=. .. ......--+..++..+... ..+-.+.+..+
T Consensus 22 ~~~alyaf~r~~d~i~D~~~~~~~~~~~L~~w~~~l~~~~~~~~~~~~~~~~pv~~~l~~~~~~-----~~l~~~~l~~l 96 (267)
T PF00494_consen 22 AVFALYAFCRELDDIVDEPSDPEEARARLQWWRDALNSIFASYEDSLPEPSHPVARALADLVRR-----YGLPREPLLEL 96 (267)
T ss_dssp HHHHHHHHHHHHHHHHHCTSS-HSCHHHHHHHHHHHHHHHH-TSTHHHSSHHHHHHHHHHHHCC-----SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhhhhhccCCCcCHHHHHHHHHHHH-----HhhhHHHHHHH
Confidence 345678888899999998873 1111122221000 00 0001111222222222211 11334556788
Q ss_pred HhhhHhhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccc
Q 020765 139 VTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 218 (321)
Q Consensus 139 ~~Gq~~d~~~~~~~~~s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~ 218 (321)
..|...|+.... ..|++++..-++.-+|++..+.+.+...- .+. ......+.++|.|+|+.|=+.|+
T Consensus 97 i~~~~~dl~~~~--~~t~~~L~~Y~~~vag~vg~l~~~~~~~~--~~~---~~~~~~a~~lG~alql~nilRd~------ 163 (267)
T PF00494_consen 97 IDGMEMDLEFTP--YETFADLERYCYYVAGSVGLLLLQLLGAH--DPD---EAARDAARALGRALQLTNILRDI------ 163 (267)
T ss_dssp HHHHHHCTT-S----SSHHHHHHHHHHHTHHHHHHHHHHHHSS--TSH---HHHHHHHHHHHHHHHHHHHHHTH------
T ss_pred HHHhcccccCCC--CCCHHHHHHHHHHHHHHHHHHHHHHhccc--cch---hhHHHHHHHHHHHHHHHHHHHHh------
Confidence 999999987643 45899999988888888877655543221 222 35677889999999999888776
Q ss_pred cCCcchhH-hhhccCcHHHHHHHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCC
Q 020765 219 LGKGSLSD-IRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPEN 297 (321)
Q Consensus 219 ~GK~~~~D-l~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~ 297 (321)
+.| +..|++-+|.=..-+..=...+++.....++ .+.. .+......++.+.++|...+..+|+.
T Consensus 164 -----~~D~~~~gR~ylP~d~l~~~gv~~~dl~~~~~~~~-~~~~---------~~~~~~~~A~~~l~~a~~~~~~l~~~ 228 (267)
T PF00494_consen 164 -----PEDALRRGRIYLPLDDLRRFGVTPEDLLAGRPRSE-RLRA---------LIRELAARARAHLDEARAGLSALPPP 228 (267)
T ss_dssp -----HHH-HHTT---S-HHHHHHTTSSHHHHHHHG-GGH-HHHH---------HHHHHHHHHHHHHHHHHHGGGGS--T
T ss_pred -----HHHHHhcccccCCchhHHHcCCCHHHHHhcccCCH-HHHH---------HHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 688 8899999998765333211122222211111 1222 23466788999999999999999655
Q ss_pred C
Q 020765 298 N 298 (321)
Q Consensus 298 ~ 298 (321)
.
T Consensus 229 ~ 229 (267)
T PF00494_consen 229 R 229 (267)
T ss_dssp T
T ss_pred h
Confidence 4
No 18
>TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase. This model describes farnesyl-diphosphate farnesyltransferase, also known as squalene synthase, as found in eukaryotes. This family is related to phytoene synthases. Tentatively identified archaeal homologs (excluded from this model) lack the C-terminal predicted transmembrane region universally conserved among members of this family.
Probab=97.10 E-value=0.043 Score=51.91 Aligned_cols=150 Identities=15% Similarity=0.151 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhch
Q 020765 126 EVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQL 205 (321)
Q Consensus 126 ~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi 205 (321)
.....+.+....|..|..+++........|.++|..-+.+=.|.-=.+.+.+-+. +|...+.......++..+|+|+|+
T Consensus 101 ~~~~~I~~~~~~M~~GMa~dl~~~~~~~~T~~dL~~YCy~VAG~VG~mlt~l~~~-~~~~~~~~~~~~~~A~~lG~aLQl 179 (336)
T TIGR01559 101 KYQEVIADITRRMGNGMADFIDKEVTNEQTVGDYDKYCHYVAGLVGIGLSRLFVA-SGFEDPSLGESEALSNSMGLFLQK 179 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCCCCCHHHHHHHHhccccHHHHHHHHHHhh-cCCCCcchhhhHHHHHHHHHHHHH
Confidence 4556666777888899998886542212688888776666555443333333222 222211112236789999999999
Q ss_pred hhhhhhccCCccccCCcchhHhhhccCcHHHHHHHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHH
Q 020765 206 IDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHAN 285 (321)
Q Consensus 206 ~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~ 285 (321)
.|=+.|+ +.|+.+|++=||.=-.-+......++. . ++.-+...+ .++.-...+..|.+
T Consensus 180 TNIlRDv-----------~ED~~~GR~YlP~e~l~~~g~~~~dl~-~----~~~~~~~~~------~l~~lv~~A~~~~~ 237 (336)
T TIGR01559 180 TNIIRDY-----------LEDINEGRMFWPREIWSKYAKKLGDFK-K----PENSDKALQ------CLNELVTNALHHAT 237 (336)
T ss_pred HHHHHHH-----------HhHHhCCCCCCCHHHHHHcCCCHHHhc-C----ccccHHHHH------HHHHHHHHHHHHHH
Confidence 9988887 577888999999653322221122211 1 111111211 34455677888888
Q ss_pred HHHHHhccCCCCC
Q 020765 286 LAAAAIDSLPENN 298 (321)
Q Consensus 286 ~a~~~l~~l~~~~ 298 (321)
.|...+..+++..
T Consensus 238 ~al~yl~~l~~~~ 250 (336)
T TIGR01559 238 DCLTYLSRLRDQS 250 (336)
T ss_pred HHHHHHHhCCCcc
Confidence 8998888886544
No 19
>PLN02632 phytoene synthase
Probab=96.81 E-value=0.24 Score=46.91 Aligned_cols=138 Identities=14% Similarity=0.067 Sum_probs=88.5
Q ss_pred HHHHHHhhhHhhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHhchhhhhhh
Q 020765 134 VVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQT--AEVAILAFDYGKNLGLAYQLIDDVLD 211 (321)
Q Consensus 134 ~~~~~~~Gq~~d~~~~~~~~~s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~--~~~~~~l~~~g~~lG~afQi~DD~ld 211 (321)
.+.+++.|..+|+... ...|++++..-++.-.|.+-.+.+.+ ++..+ ....+.....+.++|+|+|+.|=+.|
T Consensus 141 ~~~~li~g~~~Dl~~~--~~~t~~eL~~Ycy~vAgtVG~l~l~v---lg~~~~~~~~~~~~~~~A~~lG~AlQltNILRD 215 (334)
T PLN02632 141 PFRDMIEGMRMDLVKS--RYENFDELYLYCYYVAGTVGLMSVPV---MGIAPESKASTESVYNAALALGIANQLTNILRD 215 (334)
T ss_pred HHHHHHHHHHHHhccC--CCCCHHHHHHHHHHhhHHHHHHHHHH---hCCCCccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577889999998753 34588888887777777776655544 22222 12224466788999999999998888
Q ss_pred ccCCccccCCcchhHhhhccCcHHHHHHHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHh
Q 020765 212 FTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAI 291 (321)
Q Consensus 212 ~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l 291 (321)
+ +.|+..|++-+|.=..-+..=...+++.. ..++. ... .+.+-...++.|+++|...+
T Consensus 216 v-----------~eD~~~GRvYLP~e~L~~~Gv~~edl~~~-~~~~~-~~~---------l~~~~~~~Ar~~~~~a~~~l 273 (334)
T PLN02632 216 V-----------GEDARRGRVYLPQDELAQFGLTDEDIFAG-KVTDK-WRA---------FMKFQIKRARMYFAEAEEGV 273 (334)
T ss_pred H-----------HHHHhCCceeCCHHHHHHcCCCHHHHhcC-CCCHH-HHH---------HHHHHHHHHHHHHHHHHHhH
Confidence 6 68889999999965433221111122221 12222 111 13334467888999999999
Q ss_pred ccCCCCC
Q 020765 292 DSLPENN 298 (321)
Q Consensus 292 ~~l~~~~ 298 (321)
..+|...
T Consensus 274 ~~lp~~~ 280 (334)
T PLN02632 274 SELDPAS 280 (334)
T ss_pred hhCCHHh
Confidence 8888654
No 20
>cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze a head-to-head (HH) (1'-1) condensation reaction. This CD includes squalene and phytoene synthases which catalyze the 1'-1 condensation of two 15-carbon (farnesyl) and 20-carbon (geranylgeranyl) isoprenyl diphosphates, respectively. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DXXXD) located on opposite walls. These residues mediate binding of prenyl phosphates. A two-step reaction has been proposed for squalene synthase (farnesyl-diphosphate farnesyltransferase) in which, two molecules of FPP react to form a stable cyclopropylcarbinyl diphosphate intermediate, and then the intermediate undergoes heterolysis, isomerization, and reduction with NADPH to form squalene, a precursor of cholestrol. The carotenoid biosynthesis enzyme, phytoene synthase (CrtB), catalyzes
Probab=96.77 E-value=0.2 Score=45.62 Aligned_cols=135 Identities=20% Similarity=0.193 Sum_probs=88.6
Q ss_pred HHHHHHHhhhHhhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhc
Q 020765 133 TVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 212 (321)
Q Consensus 133 ~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~ 212 (321)
+.+..++.|...|+... ...|.+++...++.-.|+...+.+.+ ++.... +....++.++|.|+|+.|=+.|+
T Consensus 93 ~~~~~li~g~~~Dl~~~--~~~t~~eL~~Y~~~vAg~vg~l~~~i---~~~~~~---~~~~~~A~~lG~AlqltnilRdv 164 (265)
T cd00683 93 EPFRDLLAGMAMDLDKR--RYETLDELDEYCYYVAGVVGLMLLRV---FGASSD---EAALERARALGLALQLTNILRDV 164 (265)
T ss_pred HHHHHHHHHHHHhCCCC--CCCCHHHHHHHHHHhHHHHHHHHHHH---hCCCCC---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44678889999998753 34688888887777777665554433 232122 23567899999999999988886
Q ss_pred cCCccccCCcchhHhhhccCcHHHHHHHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Q 020765 213 TGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID 292 (321)
Q Consensus 213 ~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~ 292 (321)
+.|+..|++.+|.=..-+..-...+++. ... .+.+.. .+.+....++.+...|...+.
T Consensus 165 -----------~eD~~~gR~YlP~d~l~~~gv~~~~l~~-~~~-~~~~~~---------~~~~~~~~A~~~~~~a~~~~~ 222 (265)
T cd00683 165 -----------GEDARRGRIYLPREELARFGVTLEDLLA-PEN-SPAFRA---------LLRRLIARARAHYREALAGLA 222 (265)
T ss_pred -----------HHHHccCCCcCCHHHHHHcCCCHHHHcC-CCC-CHHHHH---------HHHHHHHHHHHHHHHHHHhHH
Confidence 5778889999997654333211222222 111 222222 244556778999999999999
Q ss_pred cCCCC
Q 020765 293 SLPEN 297 (321)
Q Consensus 293 ~l~~~ 297 (321)
.+|..
T Consensus 223 ~lp~~ 227 (265)
T cd00683 223 ALPRR 227 (265)
T ss_pred hCCHh
Confidence 99854
No 21
>TIGR03464 HpnC squalene synthase HpnC. This family of genes are members of a superfamily (pfam00494) of phytoene and squalene synthases which catalyze the head-t0-head condensation of polyisoprene pyrophosphates. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnD gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=96.66 E-value=0.18 Score=45.99 Aligned_cols=134 Identities=10% Similarity=-0.036 Sum_probs=86.5
Q ss_pred HHHHHHhhhHhhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhcc
Q 020765 134 VVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFT 213 (321)
Q Consensus 134 ~~~~~~~Gq~~d~~~~~~~~~s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~ 213 (321)
.+..++.|...|+... ...|.+++..-++.-.|+...+.+.+ ++..+++ ...++.++|.|+|+.|=+.|+
T Consensus 87 ~~~~li~~~~~Dl~~~--~~~t~~eL~~Y~~~vAg~vg~l~~~i---~g~~~~~----~~~~A~~lG~AlQltniLRDl- 156 (266)
T TIGR03464 87 PFLDLLDAFRQDVVVT--RYATWAELLDYCRYSANPVGRLVLDL---YGASDPE----NVALSDAICTALQLINFWQDV- 156 (266)
T ss_pred HHHHHHHHHHHhccCC--CCCCHHHHHHHHHHhHHHHHHHHHHH---cCCCChh----HHHHHHHHHHHHHHHHHHHhh-
Confidence 4567788988888654 24688888887777777776665543 3333333 235788999999999887775
Q ss_pred CCccccCCcchhHhhhccCcHHHHHHHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc
Q 020765 214 GTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDS 293 (321)
Q Consensus 214 ~~~~~~GK~~~~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~ 293 (321)
+.|...|++.+|.=..-+..=...+++.. ..++ .+.. .+......++.++.+|...+..
T Consensus 157 ----------~eD~~~gR~YLP~~~l~~~Gv~~edl~~~-~~~~-~~~~---------~~~~~~~~A~~~~~~a~~~~~~ 215 (266)
T TIGR03464 157 ----------GVDYRKGRVYLPRDDLARFGVSEEDLAAG-RATP-ALRE---------LMAFEVSRTRALLDRGAPLAAR 215 (266)
T ss_pred ----------HHHHhcCCccCCHHHHHHcCCCHHHHhcC-CCCH-HHHH---------HHHHHHHHHHHHHHHHHHhHHh
Confidence 67788899999965433321111222222 1222 2222 2445557788899999999999
Q ss_pred CCCCC
Q 020765 294 LPENN 298 (321)
Q Consensus 294 l~~~~ 298 (321)
+|...
T Consensus 216 lp~~~ 220 (266)
T TIGR03464 216 VDGRL 220 (266)
T ss_pred CCHhh
Confidence 88543
No 22
>TIGR03465 HpnD squalene synthase HpnD. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. In the organisms Zymomonas mobilis and Bradyrhizobium japonicum these genes have been characterized as squalene synthases (farnesyl-pyrophosphate ligases). Often, these genes appear in tandem with the HpnC gene which appears to have resulted from an ancient gene duplication event. Presumably these proteins form a heteromeric complex, but this has not yet been experimentally demonstrated.
Probab=96.00 E-value=0.29 Score=44.62 Aligned_cols=134 Identities=17% Similarity=0.102 Sum_probs=88.2
Q ss_pred HHHHHHHhhhHhhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhc
Q 020765 133 TVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDF 212 (321)
Q Consensus 133 ~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~ 212 (321)
..+..++.|...|+... ...|.+++..-++.-.|++..+.+.+ ++..++ .....+.++|.|+|+.|=+.|+
T Consensus 85 ~~~~~li~g~~~Dl~~~--~~~t~~dL~~Y~~~vAg~vg~l~~~l---lg~~~~----~~~~~a~~lG~AlqltnilRdv 155 (266)
T TIGR03465 85 EDFLEVIDGMEMDLEQT--RYPDFAELDLYCDRVAGAVGRLSARI---FGATDA----RTLEYAHHLGRALQLTNILRDV 155 (266)
T ss_pred HHHHHHHHHHHHHcCCC--CCCCHHHHHHHHHHhHHHHHHHHHHH---hCCCCh----hHHHHHHHHHHHHHHHHHHHHh
Confidence 34577889999998754 35688888888887777777665554 333332 3467789999999999888886
Q ss_pred cCCccccCCcchhHhhhccCcHHHHHHHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc
Q 020765 213 TGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID 292 (321)
Q Consensus 213 ~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~ 292 (321)
+.|+..|++.+|.=..-+..-...+++. ...++ .+.. .+..-...++.|+++|...+.
T Consensus 156 -----------~eD~~~gR~ylP~~~l~~~gv~~~~l~~-~~~~~-~~~~---------~~~~l~~~A~~~l~~a~~~~~ 213 (266)
T TIGR03465 156 -----------GEDARRGRIYLPAEELQRFGVPAADILE-GRYSP-ALAA---------LCRFQAERARAHYAEADALLP 213 (266)
T ss_pred -----------HHHHhCCCeecCHHHHHHcCCCHHHhcC-CCCCH-HHHH---------HHHHHHHHHHHHHHHHHHhhh
Confidence 5788889999997554332211122222 11122 2222 234455668888888888888
Q ss_pred cCCCC
Q 020765 293 SLPEN 297 (321)
Q Consensus 293 ~l~~~ 297 (321)
.+|..
T Consensus 214 ~~p~~ 218 (266)
T TIGR03465 214 ACDRR 218 (266)
T ss_pred hCCHh
Confidence 88854
No 23
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1. This CD includes terpenoid cyclases such as pentalenene synthase and aristolochene synthase which, using an all-trans pathway, catalyze the ionization of farnesyl diphosphate, followed by the formation of a macrocyclic intermediate by bond formation between C1 with either C10 (aristolochene synthase) or C11 (pentalenene synthase), resulting in production of tricyclic hydrocarbon pentalenene or bicyclic hydrocarbon aristolochene. As with other enzymes with the 'terpenoid synthase fold', they have two conserved metal binding motifs, proposed to coordinate Mg2+ ion-bridged binding of the diphosphate moiety of FPP to the enzymes. Metal-triggered substrate ionization initiates catalysis, and the alpha-barrel active site serves as a template to channel and stabilize the conformations of reactive carbocation intermediates through a complex cyclization cascade. These enzymes function in the monomeric form and are found in
Probab=94.12 E-value=4.2 Score=37.48 Aligned_cols=89 Identities=11% Similarity=0.120 Sum_probs=57.8
Q ss_pred CHHHHHHHHHHHHHHHhhhHhhhcccCC-CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhC--CCHHHHH--HHHHHHHH
Q 020765 124 NTEVVTLLATVVEHLVTGETMQMTTSSD-QRCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTAEVAI--LAFDYGKN 198 (321)
Q Consensus 124 ~~~~~~~~~~~~~~~~~Gq~~d~~~~~~-~~~s~~~y~~~~~~KTa~l~~~~~~~ga~lag--~~~~~~~--~l~~~g~~ 198 (321)
.+.....+.+.+...+.++..+..+... ..+|.++|+++-..-.|..+.+.+ +-...| .++.... .+..+-..
T Consensus 127 ~~~~~~r~~~~~~~~~~a~~~e~~~~~~~~~psl~eYl~~R~~~~g~~~~~~l--~~~~~g~~lp~~~~~~~~~~~l~~~ 204 (303)
T cd00687 127 SAEWFNRFAHYTEDYFDAYIWEGKNRLNGHVPDVAEYLEMRRFNIGADPCLGL--SEFIGGPEVPAAVRLDPVMRALEAL 204 (303)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHhhhcccccccHHH--HHHhcCCCCCHHHHhChHHHHHHHH
Confidence 4566677888888888898888766433 358999999764444444432221 212222 3444333 36777788
Q ss_pred HHHHhchhhhhhhccC
Q 020765 199 LGLAYQLIDDVLDFTG 214 (321)
Q Consensus 199 lG~afQi~DD~ld~~~ 214 (321)
.+...-+.||+..|-.
T Consensus 205 ~~~~~~l~NDl~S~~K 220 (303)
T cd00687 205 ASDAIALVNDIYSYEK 220 (303)
T ss_pred HHHHHHHHHHHHhhHH
Confidence 8888899999999853
No 24
>COG1562 ERG9 Phytoene/squalene synthetase [Lipid metabolism]
Probab=90.67 E-value=3.2 Score=38.42 Aligned_cols=137 Identities=16% Similarity=0.144 Sum_probs=80.4
Q ss_pred HHHHHHHHhhhHhhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhh
Q 020765 132 ATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 211 (321)
Q Consensus 132 ~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld 211 (321)
.+.+.++..|...|+....- .+++++..-+..-.|..-.+ +..+++-.+ ..........+|.|+|+.|=+.|
T Consensus 102 ~~~~~~~~da~~~Dl~~~~y--~~~~eL~~Yc~~vAg~vG~l---~~~Il~~~~---~~~~~~~a~~lG~A~QlvNilRd 173 (288)
T COG1562 102 REAFPALIDAMRMDLDRTRY--LDFEELEEYCYGVAGAVGLL---LARILGPDK---DAATRAYARGLGLALQLVNILRD 173 (288)
T ss_pred HHHHHHHHHHHHHHhhhccc--cCHHHHHHHHHHhHHHHHHH---HHHHhCccc---chhhHHHHHHHHHHHHHHHHHHH
Confidence 34567888999999876532 34555544444433333222 223333222 12233444559999999998888
Q ss_pred ccCCccccCCcchhHhhhccCcHHHHHHHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHh
Q 020765 212 FTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAI 291 (321)
Q Consensus 212 ~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l 291 (321)
+ +.|.+.|+.-+|.=-...-.-....++..... +... + .+++-...++.+...|...+
T Consensus 174 v-----------~eD~~~GrvylP~e~l~~~g~~~~d~~~~~~~--~~~~---~------~~~~~~~~ar~~~~~a~~~~ 231 (288)
T COG1562 174 V-----------GEDRRRGRVYLPAEELARFGVSEADLLAGRVD--DAFR---E------LMRFEADRARDHLAEARRGL 231 (288)
T ss_pred h-----------HHHHhCCcccCCHHHHHHhCCCHHHHHcccch--hHHH---H------HHHHHHHHHHHHHHHHHHhh
Confidence 6 78899999999854432222222222221111 1111 1 34566778888999999999
Q ss_pred ccCCCCC
Q 020765 292 DSLPENN 298 (321)
Q Consensus 292 ~~l~~~~ 298 (321)
..+|...
T Consensus 232 ~~lp~~~ 238 (288)
T COG1562 232 PALPGRA 238 (288)
T ss_pred hhCCccc
Confidence 9998766
No 25
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family. It has been suggested that this gene family be designated tps (for terpene synthase). Sequence comparisons reveal similarities between the monoterpene (C10) synthases, sesquiterpene (C15) synthases and the diterpene (C20) synthases. It has been split into six subgroups on the basis of phylogeny, called Tpsa-Tpsf []. Tpsa includes vetispiridiene synthase Q39979 from SWISSPROT, 5-epi- aristolochene synthase, Q40577 from SWISSPROT and (+)-delta-cadinene synthase P93665 from SWISSPROT . Tpsb includes (-)-limonene synthase, Q40322 from SWISSPROT. Tpsc includes copalyl diphosphate synthase (kaurene synthase A), O04408 from SWISSPROT. Tpsd includes taxadiene synthase, Q41594 from SWISSPROT, pinene synthase, O24475 from SWISSPROT and myrcene synthase, O24474 from SWISSPROT. Tpse includes ent-kaurene synthase B Q39548 from SWISSPROT. Tpsf includes linalool synthase Q9ZPN5 from SWISSPROT. In the fungus Phaeosphaeria sp. (strain L487) the synthesis of ent-kaurene from geranylgeranyl dophosphate is promoted by a single bifunctional protein [].; GO: 0000287 magnesium ion binding, 0016829 lyase activity; PDB: 3PYB_A 3PYA_A 3G4F_A 3G4D_B 3CKE_A 2OA6_D 2E4O_B 3BNY_B 3BNX_A 3LG5_A ....
Probab=88.24 E-value=15 Score=32.88 Aligned_cols=86 Identities=10% Similarity=0.069 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHhhhHhhhcccCC-CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHh---C-CCHHHHHHHHHHHHHHHH
Q 020765 127 VVTLLATVVEHLVTGETMQMTTSSD-QRCSMDYYMQKTYYKTASLISNSCKAIALLA---G-QTAEVAILAFDYGKNLGL 201 (321)
Q Consensus 127 ~~~~~~~~~~~~~~Gq~~d~~~~~~-~~~s~~~y~~~~~~KTa~l~~~~~~~ga~la---g-~~~~~~~~l~~~g~~lG~ 201 (321)
..+.+.+.+...+.|...+..+... ..+|.++|+.+-+.-+|..+.+.+..-.+ . + .+++....-..+-...+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~ps~eeYl~~R~~t~g~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 216 (270)
T PF03936_consen 138 QIKRFRNSWREYLNAYLWEARWRERGRIPSLEEYLEMRRHTSGVYPCLALIEFAL-EFALGELPPEVLEHPPMLRRLAAD 216 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS--SHHHHHHHHHHHTSHHHHHHHHHHHC-SSCHTHHHHHHHHTTHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHhccccccccHHHHHHHHhC-CCccccccHHHHHhchHHHHHHHH
Confidence 4455778888888888888776543 36899999987666565554443321111 2 1 112222221114444455
Q ss_pred Hhchhhhhhhcc
Q 020765 202 AYQLIDDVLDFT 213 (321)
Q Consensus 202 afQi~DD~ld~~ 213 (321)
.--+.||+..|-
T Consensus 217 ~~~l~NDl~S~~ 228 (270)
T PF03936_consen 217 IIRLVNDLYSYK 228 (270)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHhcccchhh
Confidence 555569988883
No 26
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terpene cyclases, Class 1 (C1) of the class 1 family of isoprenoid biosynthesis enzymes, which share the 'isoprenoid synthase fold' and convert linear, all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate into numerous cyclic forms of monoterpenes, diterpenes, and sesquiterpenes. Also included in this CD are the cis-trans terpene cyclases such as trichodiene synthase. The class I terpene cyclization reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl phosphates via bridging Mg2+ ions, inducing proposed conformational ch
Probab=87.09 E-value=22 Score=31.95 Aligned_cols=88 Identities=9% Similarity=-0.033 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHhhhHhhhcccC-CCCCCHHHHHHHHhhhhHHHHHHHHH-HHHHHhCCCH---HHHHHHHHHHHHHH
Q 020765 126 EVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCK-AIALLAGQTA---EVAILAFDYGKNLG 200 (321)
Q Consensus 126 ~~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~s~~~y~~~~~~KTa~l~~~~~~-~ga~lag~~~---~~~~~l~~~g~~lG 200 (321)
.....+.+.+...+.+...+..+.. ...++.++|+.+-..-.|..+.+.+. .+.- -..++ .....+..+....+
T Consensus 122 ~~~~r~~~~~~~~~~~~~~e~~~~~~~~~p~~~eYl~~R~~~~g~~~~~~l~~~~~g-~~l~~~~~~~~~~~~~l~~~~~ 200 (284)
T cd00868 122 ESLPYLKEAWKDLLRAYLVEAKWANEGYVPSFEEYLENRRVSIGYPPLLALSFLGMG-DILPEEAFEWLPSYPKLVRASS 200 (284)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHhceehhhHHHHHHHHHHHcC-CCCCHHHHHHhhhhHHHHHHHH
Confidence 5666777888888888888876643 34689999998765554454432221 1111 11343 34556777777788
Q ss_pred HHhchhhhhhhccC
Q 020765 201 LAYQLIDDVLDFTG 214 (321)
Q Consensus 201 ~afQi~DD~ld~~~ 214 (321)
..-=+.||+..|-.
T Consensus 201 ~~~~l~NDl~S~~k 214 (284)
T cd00868 201 TIGRLLNDIASYEK 214 (284)
T ss_pred HHHHHhccchHHHH
Confidence 88888999988843
No 27
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=80.42 E-value=46 Score=30.30 Aligned_cols=156 Identities=15% Similarity=0.056 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCC---CCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Q 020765 64 CIAEITEMIHVASLLHDDVLDDADT---RRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVT 140 (321)
Q Consensus 64 ~lA~~vEllh~asLihDDI~D~s~~---RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 140 (321)
-...++=++|.+.-+.+|+.|.+.. |..+|-..-+...+.|...+-.+...++-...-. +....-. ....+..
T Consensus 41 l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~~G~is~~~a~~~~~~~~~~~~~~~~~l-~~~~~~~---~~~~~~~ 116 (279)
T PRK12884 41 LGFLTAFFASGSANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLI-SPLAFLV---VILVSVL 116 (279)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-hHHHHHH---HHHHHHH
Confidence 3445667999999999999776653 4555655555556667666655554444222212 2211110 0011111
Q ss_pred hhHhhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccC
Q 020765 141 GETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 220 (321)
Q Consensus 141 Gq~~d~~~~~~~~~s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~G 220 (321)
+=..-...+.. .-..+.. .|..+..|...|....+......=.+.-+..-..+.+++..|+.|..
T Consensus 117 ~~~Ys~~lK~~--~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~D~e------- 181 (279)
T PRK12884 117 GILYNWKLKEY--GLIGNLY------VAFLTGMTFIFGGIAVGELNEAVILLAAMAFLMTLGREIMKDIEDVE------- 181 (279)
T ss_pred HHHHHHhhccc--cchhHHH------HHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhhh-------
Confidence 11111111111 1111111 23334555555555444333222223333444556677788888864
Q ss_pred CcchhHhhhccCcHHHHHHHhh
Q 020765 221 KGSLSDIRHGIITAPILFAMEE 242 (321)
Q Consensus 221 K~~~~Dl~egk~Tlp~l~al~~ 242 (321)
.|.+.|+.|+|+.+--+.
T Consensus 182 ----~D~~~G~~Tl~v~~G~~~ 199 (279)
T PRK12884 182 ----GDRLRGARTLAILYGEKI 199 (279)
T ss_pred ----hHHHcCCeeechHhcHHH
Confidence 567789999999885543
No 28
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1. This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
Probab=73.02 E-value=1.1e+02 Score=30.94 Aligned_cols=105 Identities=12% Similarity=0.068 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHHHHhhhHhhhcccCC-CCCCHHHHHHHHhhhhHHHHHH-HHHHHHHHh-CCCHHHHHHHH---HHHH
Q 020765 124 NTEVVTLLATVVEHLVTGETMQMTTSSD-QRCSMDYYMQKTYYKTASLISN-SCKAIALLA-GQTAEVAILAF---DYGK 197 (321)
Q Consensus 124 ~~~~~~~~~~~~~~~~~Gq~~d~~~~~~-~~~s~~~y~~~~~~KTa~l~~~-~~~~ga~la-g~~~~~~~~l~---~~g~ 197 (321)
....+..+.+.+..++.+-..+..|... ..|+.++|+++-..-+|....+ .+..| .+ ..+++..+.+. .+..
T Consensus 354 ~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~~~l~~ 431 (542)
T cd00684 354 GSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLG--MGDILTEEAFEWLESRPKLVR 431 (542)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhhHHHHHHHHHHh--cCCCCCHHHHHHHhccHHHHH
Confidence 4456677888888899998888887643 3689999999866554444322 12222 11 13555544433 5677
Q ss_pred HHHHHhchhhhhhhccCCccccCCcchhHhhhcc-CcHHHHHHHh
Q 020765 198 NLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGI-ITAPILFAME 241 (321)
Q Consensus 198 ~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk-~Tlp~l~al~ 241 (321)
..+....+.||+..+-.. ...|. ++.+.+|.-+
T Consensus 432 ~~~~i~rL~NDi~S~~kE-----------~~rGdv~n~V~~ymke 465 (542)
T cd00684 432 ASSTIGRLMNDIATYEDE-----------MKRGDVASSIECYMKE 465 (542)
T ss_pred HHHHHHHHhcChhhhHHH-----------HhcCCcccHHHHHHHh
Confidence 778888999999888432 23344 5777777543
No 29
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=66.86 E-value=90 Score=27.45 Aligned_cols=148 Identities=18% Similarity=0.129 Sum_probs=74.0
Q ss_pred HHHHHHHHHhhhcCCCCCCC--Cc---CchhhhcChhHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhhhHh
Q 020765 71 MIHVASLLHDDVLDDADTRR--GI---GSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVTLLATVVEHLVTGETM 144 (321)
Q Consensus 71 llh~asLihDDI~D~s~~RR--G~---pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~-~~~~~~~~~~~~~~~~Gq~~ 144 (321)
++|.+.-+.||+.|-+..|. ++ |-...+...+.+...+-.++..+.-.....+. .-++-.+.-.+. ...-...
T Consensus 34 ~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~-~~Ys~~~ 112 (257)
T PF01040_consen 34 LLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLALLLGPWFLLILLLGFLLG-LLYSPPL 112 (257)
T ss_pred HHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH-HHHhhhh
Confidence 99999999999988877766 43 33344555556665555555554432222221 111111111111 1111000
Q ss_pred hhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcc
Q 020765 145 QMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQT-AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGS 223 (321)
Q Consensus 145 d~~~~~~~~~s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~-~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~ 223 (321)
.+ +.. .-.++. =.|..+.....+|....+.+ +...-.+.-+..-++......+|+.|+.
T Consensus 113 ~l--k~~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~---------- 172 (257)
T PF01040_consen 113 RL--KRR--PLWGEL------VVALVFGLLILLGAYAAGGDPPPPPFLLAIFFFLLIFAIMFFNDIRDIE---------- 172 (257)
T ss_pred hh--cce--eccchh------hHHHhhhHhhhhhhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHhhhHH----------
Confidence 11 100 000110 01222334444454444443 2222333344456777888888888875
Q ss_pred hhHhhhccCcHHHHHHH
Q 020765 224 LSDIRHGIITAPILFAM 240 (321)
Q Consensus 224 ~~Dl~egk~Tlp~l~al 240 (321)
+|.+.|+.|+|+.+..
T Consensus 173 -~D~~~g~~Tl~v~~G~ 188 (257)
T PF01040_consen 173 -GDRKAGRRTLPVLLGE 188 (257)
T ss_pred -HHHHcCCcchHHHHHH
Confidence 4567799999998843
No 30
>TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II. Members of this family are component II of the heterodimeric heptaprenyl diphosphate synthase. The trusted cutoff was set such that all members identified are encoded near to a recognizable gene for component I (in Pfam family pfam07307). This enzyme acts in menaquinone-7 isoprenoid side chain biosynthesis.
Probab=63.68 E-value=65 Score=30.14 Aligned_cols=47 Identities=19% Similarity=0.122 Sum_probs=29.7
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHH
Q 020765 180 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 238 (321)
Q Consensus 180 ~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 238 (321)
.+.|.+.+....+...-+-+=.|.-|.||+.|= +++|.|++|....|
T Consensus 56 ~~~~~~~~~~~~~A~aiEliH~asLiHDDI~D~------------s~~RRg~pt~~~~~ 102 (319)
T TIGR02748 56 KFGDYDLDAIKHVAVALELIHMASLVHDDVIDD------------ADLRRGRPTIKSKW 102 (319)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHHHHHhccccCC------------CCCCCCCcCHHHHh
Confidence 344555554444555666777788999999773 34566666665444
No 31
>PRK10888 octaprenyl diphosphate synthase; Provisional
Probab=63.02 E-value=48 Score=31.14 Aligned_cols=47 Identities=30% Similarity=0.278 Sum_probs=30.9
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHH
Q 020765 180 LLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 238 (321)
Q Consensus 180 ~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 238 (321)
...|.+.+....+...-+.+=.+..|.||+.| .+++|.|++|+-..|
T Consensus 57 ~~~g~~~~~~~~~A~avEllH~asLiHDDI~D------------~s~~RRG~pt~~~~~ 103 (323)
T PRK10888 57 RAVGYQGNAHVTIAALIEFIHTATLLHDDVVD------------ESDMRRGKATANAAF 103 (323)
T ss_pred HHcCCChHHHHHHHHHHHHHHHHHHHHccccc------------CCcccCCCCCHHHHh
Confidence 33444444344455556677778999999977 356777888766554
No 32
>PRK10581 geranyltranstransferase; Provisional
Probab=62.44 E-value=82 Score=29.24 Aligned_cols=59 Identities=27% Similarity=0.307 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHhhhcCC------------CCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCC
Q 020765 65 IAEITEMIHVASLLHDDVLDD------------ADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 123 (321)
Q Consensus 65 lA~~vEllh~asLihDDI~D~------------s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~ 123 (321)
+...-+.+=.|+-|.|||.|- ++.+.|++|+-..+|...|....+-+...|...+..++
T Consensus 208 l~~~g~~lG~aFQI~DDilD~~g~~~~~GK~~g~Dl~~gk~T~p~l~~~e~a~~~a~~~~~~A~~~l~~l~ 278 (299)
T PRK10581 208 LDRYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARKKARDLIDDARQSLDQLA 278 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccccCChHHHCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 444556788889999999983 34677888887777777777766666777777777664
No 33
>PF06783 UPF0239: Uncharacterised protein family (UPF0239); InterPro: IPR009621 This is a group of transmembrane proteins of unknown function.; GO: 0016021 integral to membrane
Probab=60.90 E-value=8.7 Score=28.59 Aligned_cols=25 Identities=24% Similarity=0.235 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhhh
Q 020765 186 AEVAILAFDYGKNLGLAYQLIDDVL 210 (321)
Q Consensus 186 ~~~~~~l~~~g~~lG~afQi~DD~l 210 (321)
++..+.+-+||..+|-.||+.==+-
T Consensus 15 et~~e~llRYGLf~GAIFQliCilA 39 (85)
T PF06783_consen 15 ETFFENLLRYGLFVGAIFQLICILA 39 (85)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5677889999999999999874433
No 34
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=59.12 E-value=1.4e+02 Score=27.13 Aligned_cols=54 Identities=11% Similarity=-0.043 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCCC---CCcCchhhhcChhHHHHHHHHHHHHHHH
Q 020765 64 CIAEITEMIHVASLLHDDVLDDADTR---RGIGSLNFVMGNKLAVLAGDFLLSRACV 117 (321)
Q Consensus 64 ~lA~~vEllh~asLihDDI~D~s~~R---RG~pt~~~~~G~~~Ail~Gd~l~~~a~~ 117 (321)
-...++=++|.+.-+..|+.|-+..| +.+|-...+...+.|...+-.+...++-
T Consensus 41 l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~ 97 (279)
T PRK09573 41 LAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLI 97 (279)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHHH
Confidence 34445669999999999998876544 5677777777888888888777776653
No 35
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail. These trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) catalyze head-to-tail (HT) (1'-4) condensation reactions. This CD includes all-trans (E)-isoprenyl diphosphate synthases which synthesize various chain length (C10, C15, C20, C25, C30, C35, C40, C45, and C50) linear isoprenyl diphosphates from precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). They catalyze the successive 1'-4 condensation of the 5-carbon IPP to allylic substrates geranyl-, farnesyl-, or geranylgeranyl-diphosphate. Isoprenoid chain elongation reactions proceed via electrophilic alkylations in which a new carbon-carbon single bond is generated through interaction between a highly reactive electron-deficient allylic carbocation and an electron-rich carbon-carbon double bond. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions (DDXX(XX
Probab=57.53 E-value=1e+02 Score=27.67 Aligned_cols=44 Identities=34% Similarity=0.321 Sum_probs=28.3
Q ss_pred CCCH-HHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHH
Q 020765 183 GQTA-EVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 238 (321)
Q Consensus 183 g~~~-~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 238 (321)
|.++ +....+...-+-+=.++-|.||+.|= ++.|.|++|+-..+
T Consensus 34 g~~~~~~~~~la~aiEllh~asLIhDDI~D~------------s~~RRG~p~~~~~~ 78 (259)
T cd00685 34 GGPELEAALRLAAAIELLHTASLVHDDVMDN------------SDLRRGKPTVHKVF 78 (259)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhhhccC------------CcccCCCCcHHHHh
Confidence 4343 44455666667778899999999762 33556666665544
No 36
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=56.76 E-value=1.6e+02 Score=26.94 Aligned_cols=55 Identities=15% Similarity=-0.021 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCC----C-CCcCchhhhcChhHHHHHHHHHHHHHHHH
Q 020765 64 CIAEITEMIHVASLLHDDVLDDADT----R-RGIGSLNFVMGNKLAVLAGDFLLSRACVA 118 (321)
Q Consensus 64 ~lA~~vEllh~asLihDDI~D~s~~----R-RG~pt~~~~~G~~~Ail~Gd~l~~~a~~~ 118 (321)
.+..++=++|.+..+..|+.|.+-. | +.+|-..-+...+.|...+-.+...++-.
T Consensus 44 ~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l 103 (281)
T TIGR01474 44 LFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGV 103 (281)
T ss_pred HHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 3445556889999999999876433 2 36777777777788887777666655533
No 37
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=54.33 E-value=1.8e+02 Score=26.91 Aligned_cols=46 Identities=11% Similarity=0.018 Sum_probs=29.2
Q ss_pred HHHHHHHHhhhcCCCCC-----C---------CCcCchhhhcChhHHHHHHHHHHHHHHHH
Q 020765 72 IHVASLLHDDVLDDADT-----R---------RGIGSLNFVMGNKLAVLAGDFLLSRACVA 118 (321)
Q Consensus 72 lh~asLihDDI~D~s~~-----R---------RG~pt~~~~~G~~~Ail~Gd~l~~~a~~~ 118 (321)
.|.+ -++.|+.|.+.. | +.+|....+...+.|...+-.+...++-.
T Consensus 54 ~~ag-~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l 113 (297)
T PRK12871 54 FEAG-FVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSAL 113 (297)
T ss_pred HHHH-HHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 4665 599998654322 1 45676666777778877776666655433
No 38
>PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms. For example in eukaryotes the isoprenoid biosynthetic pathway is responsible for the synthesis of a variety of end products including cholesterol, dolichol, ubiquinone or coenzyme Q. In bacteria this pathway leads to the synthesis of isopentenyl tRNA, isoprenoid quinones, and sugar carrier lipids. Among the enzymes that participate in that pathway, are a number of polyprenyl synthetase enzymes which catalyze a 1'4-condensation between 5 carbon isoprene units. It has been shown [, , , , ] that all the above enzymes share some regions of sequence similarity. Two of these regions are rich in aspartic-acid residues and could be involved in the catalytic mechanism and/or the binding of the substrates.; GO: 0008299 isoprenoid biosynthetic process; PDB: 3AQC_B 3AQB_D 3Q1O_C 3LLW_B 3EFQ_A 3EGT_A 3DYG_A 2P1C_A 2OGD_A 2EWG_B ....
Probab=53.35 E-value=1.2e+02 Score=27.25 Aligned_cols=49 Identities=31% Similarity=0.240 Sum_probs=33.4
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHH
Q 020765 178 IALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 238 (321)
Q Consensus 178 ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 238 (321)
.+.+.+.+.+....+...-+.+=.++-|.||+.|= +++|.|++|.-..+
T Consensus 24 ~~~~~~~~~~~~~~~a~avEliH~asLIhDDI~D~------------s~~RRG~pt~~~~~ 72 (260)
T PF00348_consen 24 AAEALGGDPEKAIPLAAAVELIHAASLIHDDIIDN------------SDLRRGKPTVHKKF 72 (260)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTT------------CSEETTEECHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhhcc------------cccCCCCccccccc
Confidence 34444566666666777778888899999999772 34566666655544
No 39
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=53.17 E-value=1.9e+02 Score=26.88 Aligned_cols=50 Identities=8% Similarity=-0.119 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCC---CCcCchhhhcChhHHHHHHHHHHHHHH
Q 020765 67 EITEMIHVASLLHDDVLDDADTR---RGIGSLNFVMGNKLAVLAGDFLLSRAC 116 (321)
Q Consensus 67 ~~vEllh~asLihDDI~D~s~~R---RG~pt~~~~~G~~~Ail~Gd~l~~~a~ 116 (321)
.+.=++|.++-++.|+.|.+..| +.+|...-+...+.+...+-.++..++
T Consensus 72 l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~ 124 (314)
T PRK07566 72 LAGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGL 124 (314)
T ss_pred HHHHHHHHHHHHHhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHH
Confidence 34557899999999999976655 446666666677778777766666555
No 40
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=52.29 E-value=1.8e+02 Score=26.33 Aligned_cols=55 Identities=11% Similarity=-0.057 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCC---CCCcCchhhhcChhHHHHHHHHHHHHHHHH
Q 020765 64 CIAEITEMIHVASLLHDDVLDDADT---RRGIGSLNFVMGNKLAVLAGDFLLSRACVA 118 (321)
Q Consensus 64 ~lA~~vEllh~asLihDDI~D~s~~---RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~ 118 (321)
-+..+.=++|.++.+..|+.|.+.. |+.+|-.--+...+.|...+-.+...++-.
T Consensus 42 l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G~is~~~a~~~~~~l~~~g~~~ 99 (276)
T PRK12882 42 LAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVAL 99 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 3444566899999999999776543 577777777777888888877777666543
No 41
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase. Members of this family all are from cyanobacteria or plastid-containing eukaryotes. A member from Arabidopsis (where both plastoquinone and ubiquinone contain the C(45) prenyl moiety) was characterized by heterologous expression as a solanesyl diphosphate synthase.
Probab=44.39 E-value=1.6e+02 Score=27.65 Aligned_cols=36 Identities=36% Similarity=0.376 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHH
Q 020765 191 LAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 238 (321)
Q Consensus 191 ~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 238 (321)
.+...-+.+=.+.-|.||++| .+++|.|++|+-..|
T Consensus 71 ~~A~avEliH~asLiHDDiiD------------~s~~RRG~pt~h~~~ 106 (322)
T TIGR02749 71 RLAEITEMIHTASLVHDDVID------------ESDTRRGIETVHSLF 106 (322)
T ss_pred HHHHHHHHHHHHHHHHccccc------------CccccCCCccHHHHh
Confidence 344555667778899999977 256777888776654
No 42
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=38.96 E-value=2.1e+02 Score=26.09 Aligned_cols=82 Identities=18% Similarity=0.123 Sum_probs=47.7
Q ss_pred CHHHHHHHHhhhhHHHHHHHHHHHHHHhCC--CHHHHH-HHHHHHH-HHHHHhchhhhhhhccC--Ccc-ccCCcchhHh
Q 020765 155 SMDYYMQKTYYKTASLISNSCKAIALLAGQ--TAEVAI-LAFDYGK-NLGLAYQLIDDVLDFTG--TSA-SLGKGSLSDI 227 (321)
Q Consensus 155 s~~~y~~~~~~KTa~l~~~~~~~ga~lag~--~~~~~~-~l~~~g~-~lG~afQi~DD~ld~~~--~~~-~~GK~~~~Dl 227 (321)
+...|++..+-+|-.....|+-+|+.++.. ..+... .+.-++- .+=.+-.+.|||-|+.. |.. ..|+ ..=+
T Consensus 2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~~~~~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~--~r~l 79 (293)
T PRK06080 2 TFKAWLELARPKTLPAAFAPVLVGTALAYWLGSFHPLLALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGP--LRAI 79 (293)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCC--cccc
Confidence 456799999999988888899898877621 111111 1111121 11224478999999963 321 1221 2336
Q ss_pred hhccCcHHHHH
Q 020765 228 RHGIITAPILF 238 (321)
Q Consensus 228 ~egk~Tlp~l~ 238 (321)
.+|+.|..-+.
T Consensus 80 ~~G~is~~~~~ 90 (293)
T PRK06080 80 GRGGISPKQVK 90 (293)
T ss_pred cCCCCCHHHHH
Confidence 67777766543
No 43
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=33.64 E-value=3.9e+02 Score=24.73 Aligned_cols=50 Identities=6% Similarity=-0.160 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCC---CCcCchhhhcChhHHHHHHHHHHHHHH
Q 020765 67 EITEMIHVASLLHDDVLDDADTR---RGIGSLNFVMGNKLAVLAGDFLLSRAC 116 (321)
Q Consensus 67 ~~vEllh~asLihDDI~D~s~~R---RG~pt~~~~~G~~~Ail~Gd~l~~~a~ 116 (321)
.+.=++|.++-++.|+.|.+..| |.+|...-+...+.+...+-.++..++
T Consensus 61 l~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~ 113 (306)
T TIGR02056 61 LSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGI 113 (306)
T ss_pred HHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 45579999999999999876544 445555555667777776655555443
No 44
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=32.35 E-value=1.1e+02 Score=28.10 Aligned_cols=61 Identities=21% Similarity=0.228 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHH
Q 020765 167 TASLISNSCKAIALLAGQTAEVAILAFDYGKNL-GLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 238 (321)
Q Consensus 167 Ta~l~~~~~~~ga~lag~~~~~~~~l~~~g~~l-G~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 238 (321)
.+.+|..+..+|....+..-...-.+-..+--+ ..++.+.+++.|+ -.|-++||.|+|+.+
T Consensus 139 ~~~~f~~~~v~G~~~~~~~~~~~~~l~~~~~~~~~~a~~ii~~irDi-----------e~Dr~~G~~Tlpv~l 200 (282)
T PRK13105 139 SSTHFVSPALYGLVLAGAPFTAALWAVLAAFFLWGMASHAFGAVQDV-----------VADREAGIASIATVL 200 (282)
T ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHhCcch-----------HhHHHcCCccchHHh
No 45
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=31.60 E-value=1.1e+02 Score=28.63 Aligned_cols=61 Identities=15% Similarity=0.102 Sum_probs=37.7
Q ss_pred CHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH-HHhc----hhhhhhhccCC
Q 020765 155 SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLG-LAYQ----LIDDVLDFTGT 215 (321)
Q Consensus 155 s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG-~afQ----i~DD~ld~~~~ 215 (321)
+...|++.++-+|-..-..|+.+|..++-......+...-+..-+| +++| +.|||-|+..+
T Consensus 2 ~~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g 67 (317)
T PRK13387 2 SAKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLLFLAFMVAMLAFDIATTAINNYMDFKKA 67 (317)
T ss_pred CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence 4567999999999988888999988776311000111111222233 2344 68999999764
No 46
>CHL00151 preA prenyl transferase; Reviewed
Probab=30.99 E-value=4.3e+02 Score=24.68 Aligned_cols=21 Identities=29% Similarity=0.218 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhhhcCC
Q 020765 65 IAEITEMIHVASLLHDDVLDD 85 (321)
Q Consensus 65 lA~~vEllh~asLihDDI~D~ 85 (321)
+...-+-+=.|+-|.|||.|-
T Consensus 200 l~~~G~~lG~aFQi~DDilD~ 220 (323)
T CHL00151 200 FYLYGKHLGLAFQIIDDVLDI 220 (323)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 344445667788999999883
No 47
>PLN02857 octaprenyl-diphosphate synthase
Probab=29.68 E-value=3.6e+02 Score=26.42 Aligned_cols=22 Identities=27% Similarity=0.250 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcCC
Q 020765 64 CIAEITEMIHVASLLHDDVLDD 85 (321)
Q Consensus 64 ~lA~~vEllh~asLihDDI~D~ 85 (321)
.+...-+.|=.|+-|.|||.|-
T Consensus 292 ~l~~fG~~LGiAFQI~DDiLD~ 313 (416)
T PLN02857 292 QMYEYGKNLGLAFQVVDDILDF 313 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3444556777889999999883
No 48
>PLN00012 chlorophyll synthetase; Provisional
Probab=29.43 E-value=82 Score=30.35 Aligned_cols=44 Identities=5% Similarity=-0.171 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCC---CCcCchhhhcChhHHHHHH
Q 020765 65 IAEITEMIHVASLLHDDVLDDADTR---RGIGSLNFVMGNKLAVLAG 108 (321)
Q Consensus 65 lA~~vEllh~asLihDDI~D~s~~R---RG~pt~~~~~G~~~Ail~G 108 (321)
...+.=+++.++-+..|+.|.+..| +.+|..-.....+.++..+
T Consensus 128 ~ll~~~L~~~~an~iNDy~D~~iD~~~~~~Rpi~sG~Is~~~al~~~ 174 (375)
T PLN00012 128 MLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQI 174 (375)
T ss_pred HHHHHHHHHHHHHHHHCeecHhhhccCCCCCCcCCCccCHHHHHHHH
Confidence 3445668888899999998876544 3455555556666666633
No 49
>PLN02279 ent-kaur-16-ene synthase
Probab=28.21 E-value=5.7e+02 Score=27.31 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHhhhHhhhcccCC-CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhC--CCHHHHH--HHHHHHHHH
Q 020765 125 TEVVTLLATVVEHLVTGETMQMTTSSD-QRCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTAEVAI--LAFDYGKNL 199 (321)
Q Consensus 125 ~~~~~~~~~~~~~~~~Gq~~d~~~~~~-~~~s~~~y~~~~~~KTa~l~~~~~~~ga~lag--~~~~~~~--~l~~~g~~l 199 (321)
..++..+-+++..++.+=..+..|... ..++.++|++...- |..+-.. ...+..+.| .+++..+ ...++-...
T Consensus 589 r~v~~~l~~aW~~ll~ayl~EAeW~~~g~vPT~eEYL~na~v-S~~l~~i-~l~~~~~~G~~l~eev~e~~~~~~L~~l~ 666 (784)
T PLN02279 589 RNVTSHIIKIWLDLLKSMLTEAQWSSNKSTPTLDEYMTNAYV-SFALGPI-VLPALYLVGPKLSEEVVDSPELHKLYKLM 666 (784)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhchh-hhhhHHH-HHHHHHHhCCCCCHHHHhCcchhHHHHHH
Confidence 456777778888888887777777543 35799999987332 2221111 111112222 2333322 334566667
Q ss_pred HHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHHHH
Q 020765 200 GLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 240 (321)
Q Consensus 200 G~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al 240 (321)
+...-+.||+-.+-.+ ..+|+.+...+|.-
T Consensus 667 s~I~RLlNDI~S~e~E-----------~~rG~~nsV~cYMk 696 (784)
T PLN02279 667 STCGRLLNDIRGFKRE-----------SKEGKLNAVSLHMI 696 (784)
T ss_pred HHHHHHHHhccccHhH-----------HhCCCcceehhhhc
Confidence 7777888997666322 34466666666644
No 50
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=27.70 E-value=4.6e+02 Score=23.68 Aligned_cols=51 Identities=14% Similarity=-0.036 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHhhhcCCCCC---CCCcCchhhhcChhHHHHHHHHHHHHHH
Q 020765 66 AEITEMIHVASLLHDDVLDDADT---RRGIGSLNFVMGNKLAVLAGDFLLSRAC 116 (321)
Q Consensus 66 A~~vEllh~asLihDDI~D~s~~---RRG~pt~~~~~G~~~Ail~Gd~l~~~a~ 116 (321)
..++=+.|.+.-+..|+.|-+.. |+.+|-..-+...+.|...+-.+...++
T Consensus 43 ~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~~g~ 96 (277)
T PRK12883 43 FLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGL 96 (277)
T ss_pred HHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCCccCHHHHHHHHHHHHHHHH
Confidence 34555778899999999775543 4556666555666777776665555554
No 51
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=26.95 E-value=1.5e+02 Score=27.00 Aligned_cols=49 Identities=20% Similarity=0.258 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHHhhhcC-CCCCCCCcCchhhhcChhHHHHHHHHHHH
Q 020765 65 IAEITEMIHVASLLHDDVLD-DADTRRGIGSLNFVMGNKLAVLAGDFLLS 113 (321)
Q Consensus 65 lA~~vEllh~asLihDDI~D-~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~ 113 (321)
++..+-+.-.+.+...|+.| +.+.+.|++|.-..+|.+.+...--.++.
T Consensus 166 ~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~ 215 (283)
T TIGR01476 166 VALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTIN 215 (283)
T ss_pred HHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHH
Confidence 34445566666788999999 44566899999999999988765544433
No 52
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=25.77 E-value=5e+02 Score=23.43 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=26.9
Q ss_pred HHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHHHHhhCh
Q 020765 198 NLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFP 244 (321)
Q Consensus 198 ~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~~~ 244 (321)
-+-.+.++..|+.|..+ |-+.|+.|+|+.+-.++..
T Consensus 172 l~~~~~~~~~d~~D~e~-----------D~~~G~~Tlpv~lG~~~t~ 207 (285)
T PRK12872 172 LKSFIREIVFDIKDIEG-----------DRKSGLKTLPIVLGKERTL 207 (285)
T ss_pred HHHHHHHHHHhcccchh-----------HHHcCCcccchhcchHHHH
Confidence 34567788899888754 5677999999999766543
No 53
>PF10776 DUF2600: Protein of unknown function (DUF2600); InterPro: IPR019712 This is a bacterial family of proteins. Some members in the family are annotated as YtpB, however no function is currently known.
Probab=25.60 E-value=1.6e+02 Score=27.81 Aligned_cols=42 Identities=24% Similarity=0.170 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccc
Q 020765 173 NSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSAS 218 (321)
Q Consensus 173 ~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~ 218 (321)
+-|+.|++++-.+....+.+ ..+=+|||-+.||||=..|...
T Consensus 35 FHceGgsi~al~~~~~~~~~----i~fIVAyQTIsDYLDNLcDrs~ 76 (330)
T PF10776_consen 35 FHCEGGSIYALLPGENRDEL----IRFIVAYQTISDYLDNLCDRST 76 (330)
T ss_pred cCCcchhhhhhcCCccHhhH----HHHHHHHHHHHHHHHhhhhccC
Confidence 45777777765443322222 3466899999999998887644
No 54
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=25.11 E-value=5.2e+02 Score=23.48 Aligned_cols=51 Identities=14% Similarity=-0.045 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhhhcCCCCCC-----CCcCchhhhcChhHHHHHHHHHHHHHHH
Q 020765 67 EITEMIHVASLLHDDVLDDADTR-----RGIGSLNFVMGNKLAVLAGDFLLSRACV 117 (321)
Q Consensus 67 ~~vEllh~asLihDDI~D~s~~R-----RG~pt~~~~~G~~~Ail~Gd~l~~~a~~ 117 (321)
.+.=++|.+..+..|+.|.+-.| |.+|-+--+-..+.|...+-.++..++-
T Consensus 49 ~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~~~ 104 (282)
T PRK12848 49 LGVFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVAFL 104 (282)
T ss_pred HHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 34448999999999998765433 4678777777888888888777776654
No 55
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=25.04 E-value=1.8e+02 Score=27.21 Aligned_cols=78 Identities=14% Similarity=0.005 Sum_probs=48.3
Q ss_pred CCHHHHHHHH---hhhhHHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHHHHH-----hchhhhhhhccCCcccc
Q 020765 154 CSMDYYMQKT---YYKTASLISNSCKAIALLAGQT------AEVAILAFDYGKNLGLA-----YQLIDDVLDFTGTSASL 219 (321)
Q Consensus 154 ~s~~~y~~~~---~~KTa~l~~~~~~~ga~lag~~------~~~~~~l~~~g~~lG~a-----fQi~DD~ld~~~~~~~~ 219 (321)
.+...|.+.. +-+|-.+.-.|+..|..++... .... .-+..-+|.. =.+.||+.|.--|.. .
T Consensus 28 ~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~-~ 103 (314)
T PRK12878 28 PWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRDIDAK-V 103 (314)
T ss_pred hhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcccC-C
Confidence 4567899999 8889999999999999887542 1111 1112223333 378999999655532 1
Q ss_pred CCcchhHhhhccCcHH
Q 020765 220 GKGSLSDIRHGIITAP 235 (321)
Q Consensus 220 GK~~~~Dl~egk~Tlp 235 (321)
.++...=+..|+.|..
T Consensus 104 ~Rt~~RPl~sG~is~~ 119 (314)
T PRK12878 104 ARTRSRPLPSGQVSRK 119 (314)
T ss_pred CCCCCCCCCCCCcCHH
Confidence 1111233666777743
No 56
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=24.97 E-value=1.4e+02 Score=28.79 Aligned_cols=46 Identities=22% Similarity=0.417 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHhchhhhhhhccCC
Q 020765 166 KTASLISNSCKAIALLAGQTA-EVAILAFDYGKNLGLAYQLIDDVLDFTGT 215 (321)
Q Consensus 166 KTa~l~~~~~~~ga~lag~~~-~~~~~l~~~g~~lG~afQi~DD~ld~~~~ 215 (321)
-||..++++|.......|.+- +.+- --.+|..||+. .||+-|+.+.
T Consensus 370 VtGv~IAaa~m~lss~tgnPIyD~~G-SivvGaLLGmV---e~diyDvK~~ 416 (503)
T KOG2802|consen 370 VTGVIIAAACMGLSSITGNPIYDSLG-SIVVGALLGMV---ENDIYDVKAT 416 (503)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccccc-hHHHHHHHHHH---HHhhhhccce
Confidence 366667777666656666542 2111 22468889998 8898888653
No 57
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=24.86 E-value=81 Score=28.86 Aligned_cols=45 Identities=27% Similarity=0.163 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHH
Q 020765 73 HVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVAL 119 (321)
Q Consensus 73 h~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l 119 (321)
|.+++..+|+.|+ .|.|.|+.=.++|.+.|...-..+.....-.+
T Consensus 175 ~~~~l~~~d~edd--~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~ 219 (279)
T PRK12869 175 HIWSLALKYREDY--RRAGVPMLPAVVGEKTSVRAISISNALMIPYI 219 (279)
T ss_pred HHHHHHHHhHHhH--HHcCCeecceeecHHHHHHHHHHHHHHHHHHH
No 58
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=23.48 E-value=5.6e+02 Score=23.19 Aligned_cols=77 Identities=17% Similarity=0.072 Sum_probs=45.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhCC-CHHHHH-HHHHHHHHH-HHHhchhhhhhhccCCccccCCcchhHhhhccC
Q 020765 156 MDYYMQKTYYKTASLISNSCKAIALLAGQ-TAEVAI-LAFDYGKNL-GLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII 232 (321)
Q Consensus 156 ~~~y~~~~~~KTa~l~~~~~~~ga~lag~-~~~~~~-~l~~~g~~l-G~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~ 232 (321)
...|++.++.++..+...|+..|..++.. ..+... .+.-+|.-+ -.+=.+.||+.|..-|... |+ ..=+-.|+.
T Consensus 3 ~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~--~~-~Rpl~sG~i 79 (279)
T PRK09573 3 IKAYFELIRPKNCIGASIGAIIGYLIASNFKIDLKGIILAALVVFLVCAGGNVINDIYDIEIDKIN--KP-ERPIPSGRI 79 (279)
T ss_pred HHHHHHHHhHhHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHHHHhhccccccccc--CC-CCCcCCCcc
Confidence 46799999999998888888899888743 222111 122222221 1233689999999765422 11 223556666
Q ss_pred cHH
Q 020765 233 TAP 235 (321)
Q Consensus 233 Tlp 235 (321)
|..
T Consensus 80 s~~ 82 (279)
T PRK09573 80 SLK 82 (279)
T ss_pred CHH
Confidence 533
No 59
>PF06304 DUF1048: Protein of unknown function (DUF1048); InterPro: IPR008316 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 2O3L_B 2HH6_A 2O4T_A.
Probab=23.30 E-value=45 Score=25.88 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=17.1
Q ss_pred HHhchhhhhhhccCCccccCCcc
Q 020765 201 LAYQLIDDVLDFTGTSASLGKGS 223 (321)
Q Consensus 201 ~afQi~DD~ld~~~~~~~~GK~~ 223 (321)
-..+|.+|++|+|.....-|+++
T Consensus 45 ~~~~il~dildlfEe~aadG~~V 67 (103)
T PF06304_consen 45 DMMEILSDILDLFEEAAADGKSV 67 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTT--H
T ss_pred HHHHHHHHHHHHHHHHHHcCCCh
Confidence 35689999999998877777764
No 60
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=22.48 E-value=6.1e+02 Score=23.26 Aligned_cols=54 Identities=15% Similarity=-0.041 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCCC-----CCcCchhhhcChhHHHHHHHHHHHHHHHH
Q 020765 65 IAEITEMIHVASLLHDDVLDDADTR-----RGIGSLNFVMGNKLAVLAGDFLLSRACVA 118 (321)
Q Consensus 65 lA~~vEllh~asLihDDI~D~s~~R-----RG~pt~~~~~G~~~Ail~Gd~l~~~a~~~ 118 (321)
...++=++|.+..+..|+.|.+-.| |.+|-+--+-....|++.+-.+...++-.
T Consensus 51 ~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~~~~~~~~~~~l 109 (290)
T PRK12870 51 IILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALLCAAGL 109 (290)
T ss_pred HHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 3445568999999999997765443 36777777777788888777766666533
No 61
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=21.39 E-value=5e+02 Score=23.37 Aligned_cols=79 Identities=13% Similarity=0.011 Sum_probs=47.5
Q ss_pred CHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHH-HHhchhhhhhhccCCccccCCcchhHhhhccC
Q 020765 155 SMDYYMQKTYYKTASLISNSCKAIALLAGQTA-EVAILAFDYGKNLG-LAYQLIDDVLDFTGTSASLGKGSLSDIRHGII 232 (321)
Q Consensus 155 s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~-~~~~~l~~~g~~lG-~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~ 232 (321)
....|++.++.++......++..|+.++.... ...-.+.-+|.-+. .+-.+.||+.|+--|... |+ ..=+-.|+.
T Consensus 3 ~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~--r~-~Rpl~~G~i 79 (279)
T PRK12884 3 KMKAYLELLRPEHGLMAGIAVVLGAIIALGGLPLDEALLGFLTAFFASGSANALNDYFDYEVDRIN--RP-DRPIPSGRI 79 (279)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhcc--CC-CCCCCCCCC
Confidence 34679999999988887778888888875431 11111222222222 234689999999876544 32 233556666
Q ss_pred cHHH
Q 020765 233 TAPI 236 (321)
Q Consensus 233 Tlp~ 236 (321)
|...
T Consensus 80 s~~~ 83 (279)
T PRK12884 80 SRRE 83 (279)
T ss_pred CHHH
Confidence 5443
No 62
>PHA02603 nrdC.11 hypothetical protein; Provisional
Probab=20.34 E-value=3e+02 Score=26.08 Aligned_cols=40 Identities=15% Similarity=0.134 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHH-HHhccCCCCCCcchHHHHHHHHHHHHHHHhc
Q 020765 274 QKTRELAVKHANLAA-AAIDSLPENNDEDVTKSRRALLDLTHRVITR 319 (321)
Q Consensus 274 ~~~~~~~~~~~~~a~-~~l~~l~~~~~~~~~~~~~~L~~l~~~~~~R 319 (321)
+++.+++.++...+. ..-..+|+.+ -.+...+++..+..+
T Consensus 283 e~~~~l~~e~e~a~~~a~~s~LP~~p------D~~~i~~~l~~vy~~ 323 (330)
T PHA02603 283 EFLEEIVDEVEAAADEASKNGMPQKV------DMEFWDDFLEEVYLE 323 (330)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCc------CHHHHHHHHHHHHHH
Confidence 334444444444322 2233788888 456677777666544
No 63
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=20.16 E-value=6.1e+02 Score=22.89 Aligned_cols=77 Identities=13% Similarity=0.118 Sum_probs=45.2
Q ss_pred CHHHHHHHHhhhhHHHHHHHHHHHHHHhCCC-HHH-HHHHHHHHHHHH-HHhchhhhhhhccCCccccCCcchhHhhhcc
Q 020765 155 SMDYYMQKTYYKTASLISNSCKAIALLAGQT-AEV-AILAFDYGKNLG-LAYQLIDDVLDFTGTSASLGKGSLSDIRHGI 231 (321)
Q Consensus 155 s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~-~~~-~~~l~~~g~~lG-~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk 231 (321)
+...|++..+-++..+-..+..+|+.++... +.. .-.+--.+-.++ .+=.+.||+.|+.-|.. .|| ..=+-.|+
T Consensus 2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~~~~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~--n~~-~Rpl~sG~ 78 (277)
T PRK12883 2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPPIKTLILIFLVVYLGCSGGNTINDYFDYEIDKI--NRP-NRPLPRGA 78 (277)
T ss_pred CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHhHHHhhhhHhcccc--CCC-CCCCCCCc
Confidence 4567999999999888777777888776322 211 111111222222 34578999999987653 222 23344555
Q ss_pred CcH
Q 020765 232 ITA 234 (321)
Q Consensus 232 ~Tl 234 (321)
.|.
T Consensus 79 is~ 81 (277)
T PRK12883 79 MSR 81 (277)
T ss_pred cCH
Confidence 553
Done!