Query 020765
Match_columns 321
No_of_seqs 226 out of 1159
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 07:51:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020765.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020765hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3oyr_A Trans-isoprenyl diphosp 100.0 7.6E-73 2.6E-77 530.1 31.9 294 2-320 46-344 (345)
2 3mzv_A Decaprenyl diphosphate 100.0 2E-72 6.9E-77 527.3 34.0 295 2-321 33-333 (341)
3 3rmg_A Octaprenyl-diphosphate 100.0 2.7E-72 9.2E-77 525.4 30.6 294 2-321 28-326 (334)
4 3apz_A Geranyl diphosphate syn 100.0 3.5E-72 1.2E-76 528.8 29.6 320 2-321 29-348 (348)
5 3pko_A Geranylgeranyl pyrophos 100.0 1.3E-71 4.5E-76 520.7 31.7 296 2-321 36-334 (334)
6 3nf2_A Putative polyprenyl syn 100.0 7.4E-72 2.5E-76 525.1 30.0 296 2-321 24-344 (352)
7 3lmd_A Geranylgeranyl pyrophos 100.0 1.5E-71 5.1E-76 523.3 29.4 293 3-321 56-352 (360)
8 1wy0_A Geranylgeranyl pyrophos 100.0 3.6E-71 1.2E-75 520.7 30.0 294 3-321 27-342 (342)
9 3aqb_B Component B of hexapren 100.0 1.6E-70 5.6E-75 512.7 28.5 292 3-321 26-325 (325)
10 4dhd_A Polyprenyl synthetase; 100.0 8E-70 2.7E-74 512.7 30.6 288 6-321 30-336 (358)
11 1wmw_A Geranylgeranyl diphosph 100.0 5.1E-70 1.7E-74 510.3 26.8 291 3-321 21-330 (330)
12 2q80_A Geranylgeranyl pyrophos 100.0 5.6E-69 1.9E-73 496.5 24.0 289 1-321 5-297 (301)
13 2e8v_A Geranylgeranyl pyrophos 100.0 1.1E-68 3.7E-73 502.7 23.2 295 3-318 22-339 (340)
14 3lk5_A Geranylgeranyl pyrophos 100.0 1.3E-67 4.3E-72 500.7 29.5 295 8-320 49-372 (380)
15 3tc1_A Octaprenyl pyrophosphat 100.0 1.8E-67 6.1E-72 488.4 28.0 277 14-317 28-307 (315)
16 1v4e_A Octoprenyl-diphosphate 100.0 1.2E-67 4.1E-72 486.9 24.7 260 11-298 30-289 (299)
17 2qis_A Farnesyl pyrophosphate 100.0 1.1E-66 3.8E-71 494.3 28.3 296 6-321 63-374 (374)
18 1yhl_A Farnesyl pyrophosphate 100.0 1.9E-66 6.6E-71 492.0 28.1 299 7-321 34-362 (362)
19 1uby_A FPS, farnesyl diphospha 100.0 3.2E-66 1.1E-70 490.0 28.1 295 7-321 57-367 (367)
20 1rtr_A Geranyltranstransferase 100.0 6.8E-66 2.3E-70 475.6 24.4 258 5-321 26-293 (301)
21 2ihi_A Pyrophosphate synthase; 100.0 2.1E-65 7.2E-70 487.3 27.4 293 7-320 66-395 (395)
22 3dyh_A Farnesyl pyrophosphate 100.0 1.2E-65 4E-70 489.1 23.9 306 7-321 56-390 (390)
23 3uca_A Geranyltranstransferase 100.0 2.4E-65 8.1E-70 474.4 25.1 256 6-321 59-324 (324)
24 3ts7_A Geranyltranstransferase 100.0 3.3E-65 1.1E-69 473.5 25.1 256 5-321 34-302 (324)
25 3p8l_A Geranyltranstransferase 100.0 3.2E-65 1.1E-69 470.1 24.7 257 5-319 34-302 (302)
26 3mav_A Farnesyl pyrophosphate 100.0 1E-64 3.6E-69 484.8 28.6 292 7-319 66-394 (395)
27 4f62_A Geranyltranstransferase 100.0 7.7E-65 2.6E-69 469.7 26.2 255 6-321 30-295 (317)
28 3lsn_A Geranyltranstransferase 100.0 5E-65 1.7E-69 469.5 24.5 255 6-321 29-296 (304)
29 3p8r_A Geranyltranstransferase 100.0 4.6E-65 1.6E-69 469.7 24.2 256 5-321 34-302 (302)
30 2her_A Fragment, farnesyl pyro 100.0 1E-65 3.5E-70 484.1 19.8 284 7-319 58-354 (368)
31 1rqj_A Geranyltranstransferase 100.0 4.2E-65 1.4E-69 470.5 20.6 258 6-321 29-299 (299)
32 2h8o_A Geranyltranstransferase 100.0 1.2E-64 4E-69 472.6 23.1 256 5-321 69-335 (335)
33 3pde_A Farnesyl-diphosphate sy 100.0 4.3E-64 1.5E-68 463.2 23.6 258 5-321 32-300 (309)
34 2ftz_A Geranyltranstransferase 100.0 5.7E-64 2E-68 458.4 24.2 251 5-319 30-284 (284)
35 3lom_A Geranyltranstransferase 100.0 2.8E-64 9.5E-69 466.0 22.0 255 5-320 34-302 (313)
36 3m0g_A Farnesyl diphosphate sy 100.0 2.4E-64 8.3E-69 463.6 20.0 252 6-321 27-289 (297)
37 3ipi_A Geranyltranstransferase 100.0 2.2E-63 7.4E-68 456.8 23.0 257 6-320 27-283 (295)
38 3llw_A Geranyltranstransferase 100.0 2.2E-61 7.6E-66 446.2 27.4 263 4-320 31-304 (311)
39 2q58_A Fragment, farnesyl pyro 100.0 3.8E-62 1.3E-66 462.6 21.2 284 8-320 59-359 (368)
40 3npk_A Geranyltranstransferase 100.0 3.6E-61 1.2E-65 441.0 24.4 254 4-318 22-284 (291)
41 2azj_A Geranylgeranyl pyrophos 100.0 1.7E-59 5.9E-64 430.0 21.6 245 5-320 34-280 (289)
42 2j1p_A Geranylgeranyl pyrophos 100.0 3.4E-58 1.2E-62 423.0 23.6 243 6-321 37-293 (293)
43 4fp4_A Polyprenyl synthetase; 100.0 1.1E-53 3.6E-58 388.7 16.2 200 3-230 26-226 (285)
44 3kra_B Geranyl diphosphate syn 100.0 7.3E-50 2.5E-54 363.9 22.6 186 4-209 22-221 (274)
45 3qkc_B Geranyl diphosphate syn 100.0 2.1E-48 7E-53 354.3 22.8 183 5-210 28-223 (273)
46 4hd1_A Squalene synthase HPNC; 96.9 0.17 5.9E-06 45.6 20.4 132 135-297 106-237 (294)
47 3acx_A Dehydrosqualene synthas 96.5 0.4 1.4E-05 43.1 19.9 134 135-298 110-243 (293)
48 3vj8_A Squalene synthase; farn 96.4 0.13 4.4E-06 47.5 16.5 143 129-297 114-256 (343)
49 3kb9_A EPI-isozizaene synthase 95.6 0.23 8E-06 46.4 14.4 90 124-214 175-268 (382)
50 1ps1_A Pentalenene synthase; a 93.9 3.5 0.00012 37.2 17.2 112 119-241 127-243 (337)
51 3v1v_A 2-MIB synthase, 2-methy 86.5 11 0.00036 35.8 13.2 90 123-215 252-346 (433)
52 3n0f_A Isoprene synthase; terp 85.4 12 0.00041 36.6 13.3 102 127-241 365-473 (555)
53 3g4d_A (+)-delta-cadinene synt 83.7 18 0.00061 35.4 13.6 88 125-215 365-459 (554)
54 3m00_A Aristolochene synthase; 82.7 22 0.00076 34.6 13.8 102 125-240 361-469 (550)
55 3aqb_A Component A of hexapren 78.2 2.8 9.7E-05 33.0 4.6 43 104-146 72-114 (147)
56 2ong_A 4S-limonene synthase; m 77.6 34 0.0012 33.2 13.3 102 127-241 356-464 (543)
57 3uca_A Geranyltranstransferase 73.6 22 0.00074 32.2 10.1 70 64-133 235-317 (324)
58 4f62_A Geranyltranstransferase 71.9 18 0.0006 32.7 9.0 60 64-123 206-277 (317)
59 3p8r_A Geranyltranstransferase 71.2 14 0.00047 33.2 8.1 59 65-123 214-284 (302)
60 3lsn_A Geranyltranstransferase 71.0 10 0.00036 34.0 7.2 79 64-142 207-299 (304)
61 3ts7_A Geranyltranstransferase 67.9 25 0.00085 31.8 9.1 61 64-124 213-285 (324)
62 3p5p_A Taxadiene synthase; cla 67.3 28 0.00096 35.4 10.2 103 126-241 566-675 (764)
63 1n1b_A (+)-bornyl diphosphate 66.5 25 0.00086 34.2 9.4 101 127-241 362-471 (549)
64 3rmg_A Octaprenyl-diphosphate 66.4 28 0.00094 31.6 9.2 46 182-239 62-107 (334)
65 2q80_A Geranylgeranyl pyrophos 65.6 51 0.0018 29.3 10.7 46 181-238 39-84 (301)
66 3lom_A Geranyltranstransferase 64.7 19 0.00064 32.5 7.6 71 64-134 214-297 (313)
67 3sdr_A Alpha-bisabolene syntha 62.6 30 0.001 35.5 9.4 87 127-215 626-721 (817)
68 3mzv_A Decaprenyl diphosphate 62.2 24 0.00084 32.1 8.0 49 178-238 64-112 (341)
69 3p8l_A Geranyltranstransferase 61.8 35 0.0012 30.5 8.8 59 64-122 210-280 (302)
70 3nf2_A Putative polyprenyl syn 57.4 26 0.00088 32.1 7.3 49 178-238 65-113 (352)
71 4fp4_A Polyprenyl synthetase; 56.9 40 0.0014 29.9 8.2 42 185-238 66-107 (285)
72 3m0g_A Farnesyl diphosphate sy 56.3 22 0.00076 31.7 6.5 66 68-133 204-282 (297)
73 1rtr_A Geranyltranstransferase 56.2 29 0.00098 31.0 7.2 59 65-123 203-273 (301)
74 3pde_A Farnesyl-diphosphate sy 54.3 43 0.0015 30.0 8.1 58 65-122 210-279 (309)
75 2h8o_A Geranyltranstransferase 53.4 35 0.0012 30.9 7.4 60 64-123 246-317 (335)
76 3s9v_A Abietadiene synthase, c 52.5 44 0.0015 34.0 8.7 102 127-241 598-706 (785)
77 2ftz_A Geranyltranstransferase 51.3 78 0.0027 27.8 9.2 46 181-238 60-107 (284)
78 2j5c_A 1,8-cineole synthase; t 50.3 52 0.0018 32.2 8.5 87 127-215 383-475 (569)
79 3pko_A Geranylgeranyl pyrophos 47.9 56 0.0019 29.5 7.9 43 184-238 73-115 (334)
80 3aqb_B Component B of hexapren 47.2 46 0.0016 29.9 7.2 48 179-238 56-103 (325)
81 1yyq_A Trichodiene synthase; t 46.8 1.7E+02 0.0059 26.7 15.1 150 71-242 91-251 (374)
82 1v4e_A Octoprenyl-diphosphate 46.7 57 0.002 28.9 7.6 38 189-238 63-100 (299)
83 3ipi_A Geranyltranstransferase 45.4 1.2E+02 0.0041 26.8 9.5 60 65-124 192-265 (295)
84 2e8v_A Geranylgeranyl pyrophos 44.7 1.1E+02 0.0036 27.7 9.2 46 181-238 54-99 (340)
85 1di1_A Aristolochene synthase; 43.6 1.6E+02 0.0054 25.4 16.8 64 152-215 150-213 (300)
86 3llw_A Geranyltranstransferase 41.2 1.3E+02 0.0043 26.9 9.0 58 64-121 214-281 (311)
87 4dhd_A Polyprenyl synthetase; 41.1 63 0.0021 29.5 7.1 38 189-238 67-104 (358)
88 1wy0_A Geranylgeranyl pyrophos 39.6 78 0.0027 28.6 7.5 44 183-238 62-105 (342)
89 1wmw_A Geranylgeranyl diphosph 38.0 1.1E+02 0.0038 27.3 8.2 49 178-238 50-98 (330)
90 3oyr_A Trans-isoprenyl diphosp 37.1 38 0.0013 30.8 4.9 34 178-211 76-109 (345)
91 3lmd_A Geranylgeranyl pyrophos 36.7 65 0.0022 29.5 6.5 49 178-238 85-134 (360)
92 3bny_A Aristolochene synthase; 31.2 2.6E+02 0.0089 24.2 16.1 64 152-215 164-227 (320)
93 1rqj_A Geranyltranstransferase 30.3 1.8E+02 0.0063 25.5 8.2 49 178-238 55-105 (299)
94 3npk_A Geranyltranstransferase 27.0 2.4E+02 0.0082 24.8 8.3 41 186-238 59-101 (291)
95 2j1p_A Geranylgeranyl pyrophos 26.0 3.2E+02 0.011 23.9 9.0 46 181-238 66-113 (293)
96 2azj_A Geranylgeranyl pyrophos 22.1 3.9E+02 0.013 23.2 9.4 59 65-123 193-260 (289)
97 1v54_K IHQ, cytochrome C oxida 20.6 56 0.0019 21.2 2.0 24 90-115 4-27 (56)
No 1
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=100.00 E-value=7.6e-73 Score=530.14 Aligned_cols=294 Identities=32% Similarity=0.460 Sum_probs=245.0
Q ss_pred CCCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 020765 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (321)
Q Consensus 2 ~~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDD 81 (321)
+.+++|.+.++++|++..| |||+||.|++++++++|++.+ .+..+|+++||||+|||||||
T Consensus 46 l~~~~~~l~~~~~y~~~~g--GKrlRp~l~ll~~~~~g~~~~-----------------~~~~~A~aiEliH~asLiHDD 106 (345)
T 3oyr_A 46 MQSDVAIIPALAEHLIAAG--GKRLRPLMTVAAARLAGADND-----------------HFQKLAAAVEFIHTATLLHDD 106 (345)
T ss_dssp TCCSSTHHHHHHHHHHTTT--CCCHHHHHHHHHHHHTTCCSS-----------------THHHHHHHHHHHHHHHHHTTT
T ss_pred hccCChhHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHHHHHHHHHHHHCc
Confidence 4678899999999999989 999999999999999987532 377899999999999999999
Q ss_pred hcCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHH
Q 020765 82 VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQ 161 (321)
Q Consensus 82 I~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~ 161 (321)
|||+|++|||+||+|++||++.|||+||||+++||+.+++..+.++++.+++++..++.||.+|+.+..+..+++++|++
T Consensus 107 i~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~ 186 (345)
T 3oyr_A 107 VVDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNSMKALEILARASRVIAEGEVLQLMRSHDLNLSQAVYLE 186 (345)
T ss_dssp TC---------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTSSCSSCCHHHHHH
T ss_pred ccCCCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999998777899999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHHHHh
Q 020765 162 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME 241 (321)
Q Consensus 162 ~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~ 241 (321)
|+++|||+||++||++|++++|.+++..+.++.||.++|+||||+||++|++++++.+|||+|+||++||+|||++++++
T Consensus 187 ~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl~egK~TlP~i~al~ 266 (345)
T 3oyr_A 187 IIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDFREGKATLPLLLAIA 266 (345)
T ss_dssp HHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------------CCHHHHHHHH
T ss_pred HHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCccchhhcCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hC-hHHHHHH----HcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHH
Q 020765 242 EF-PQLRTVV----EQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRV 316 (321)
Q Consensus 242 ~~-~~~~~~l----~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~~~~ 316 (321)
.. ++.++.+ .+...++++++++++++.++|+++++++++++|.++|.+.|+.+|+++ .++.|.+|++++
T Consensus 267 ~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L~~la~~~ 340 (345)
T 3oyr_A 267 RSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAALAMFPAND------WREALEELADFA 340 (345)
T ss_dssp HSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTSCSSH------HHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHH
Confidence 74 4444444 344446788999999999999999999999999999999999999988 999999999999
Q ss_pred Hhcc
Q 020765 317 ITRN 320 (321)
Q Consensus 317 ~~R~ 320 (321)
++|+
T Consensus 341 ~~R~ 344 (345)
T 3oyr_A 341 VSRR 344 (345)
T ss_dssp HHC-
T ss_pred Hhcc
Confidence 9996
No 2
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=100.00 E-value=2e-72 Score=527.27 Aligned_cols=295 Identities=31% Similarity=0.521 Sum_probs=259.7
Q ss_pred CCCC-chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHh
Q 020765 2 VVAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHD 80 (321)
Q Consensus 2 ~~~~-~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihD 80 (321)
+.+. +|.+.++++|++..| |||+||.|++++++++|++.+ .+..+|+++||||+||||||
T Consensus 33 ~~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~~-----------------~~~~~A~aiEliH~asLiHD 93 (341)
T 3mzv_A 33 MSSEHAPRIPEVTAHLIEAG--GKRLRPMLTLAAARLVGYGGP-----------------FHVHLAATVEFIHTATLLHD 93 (341)
T ss_dssp SCCSSCTHHHHHHHHHHHSC--CCCHHHHHHHHHHHHTTCCCS-----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCChHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHHHHHHHHHHHHc
Confidence 3456 899999999999989 999999999999999986432 37889999999999999999
Q ss_pred hhcCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHH
Q 020765 81 DVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYM 160 (321)
Q Consensus 81 DI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~ 160 (321)
||||+|++|||+||+|.+||++.|||+||||+++||+.+++..+.++++.+++++..++.||.+|+.+..+..+++++|+
T Consensus 94 DI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~t~~~y~ 173 (341)
T 3mzv_A 94 DVVDESRQRRGRPTANLLWDNKSSVLVGDYLFARSFQLMTDTGNMRVMEILANASAVIAEGEVLQLTAAQNLATTEDIYL 173 (341)
T ss_dssp HC------CTTSCCHHHHSCHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCCHHHHH
T ss_pred CccCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999888999999999999999999999999877789999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHHHH
Q 020765 161 QKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 240 (321)
Q Consensus 161 ~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al 240 (321)
+|+++|||+||++||++|++++|.+++..+.++.||.++|+||||+||++|++++++.+|||+|+||++||+|||+++++
T Consensus 174 ~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~Tlp~i~al 253 (341)
T 3mzv_A 174 RVIRGKTAALFSAATEVGGIIGGAPEDQVQALFDYGDALGIAFQIVDDLLDYGGKSAEIGKNTGDDFRERKLTMPVIKAV 253 (341)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCHHHHTTCCCHHHHHHH
T ss_pred HHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCcccccCchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCh-H----HHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHH
Q 020765 241 EEFP-Q----LRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHR 315 (321)
Q Consensus 241 ~~~~-~----~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~~~ 315 (321)
+..+ . +++++.+...+++++++++++++++|+++++++++++|.++|.+.|+.+|+++ .++.|..|+++
T Consensus 254 ~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~l~~~ga~~~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L~~la~~ 327 (341)
T 3mzv_A 254 ALADEAERAFWKRVIEKGDQQDGDLEHAMALMTKHGTLEATRLAAIGWTDTARKALAKLPDHP------LRQMLDDLADY 327 (341)
T ss_dssp HTCCHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCH------HHHHHHHHHHH
T ss_pred HhCCHhHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHH
Confidence 9853 3 34455555456789999999999999999999999999999999999999988 99999999999
Q ss_pred HHhccC
Q 020765 316 VITRNK 321 (321)
Q Consensus 316 ~~~R~~ 321 (321)
+++|++
T Consensus 328 ~~~r~~ 333 (341)
T 3mzv_A 328 VVERVR 333 (341)
T ss_dssp HTGGGC
T ss_pred HHhccc
Confidence 999974
No 3
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.7e-72 Score=525.36 Aligned_cols=294 Identities=29% Similarity=0.416 Sum_probs=254.7
Q ss_pred CCCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 020765 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (321)
Q Consensus 2 ~~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDD 81 (321)
+.+.+|.+.++++|++..| |||+||.|++++++++|++. +.+..+|+++||||+|||||||
T Consensus 28 ~~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~-----------------~~~~~~A~aiEliH~asLiHDD 88 (334)
T 3rmg_A 28 LSDSNALLDSVITHIRKRN--GKMMRPILVLLVARLYGAVT-----------------PATLHAAVSLELLHTASLVHDD 88 (334)
T ss_dssp --CCCHHHHHHHHHTCC------CHHHHHHHHHHHHHSCCC-----------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCh-----------------HHHHHHHHHHHHHHHHHHHHcC
Confidence 4567899999999999989 99999999999999998632 3478899999999999999999
Q ss_pred hcCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHH
Q 020765 82 VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQ 161 (321)
Q Consensus 82 I~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~ 161 (321)
|||+|++|||+||+|++||++.|||+||||+++|+..+++..+.++++.+++++..++.||.+|+.+..+..+++++|++
T Consensus 89 I~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~t~~~y~~ 168 (334)
T 3rmg_A 89 VVDESTERRGQLSVNAIFNNKVSVLAGDYLLATSLVHAEQTNNYEIIRLVSSLGQKLAEGELLQLSNVSNHSFSEEVYFD 168 (334)
T ss_dssp HHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCHHHHHH
T ss_pred ccCCCCCcCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999988889999999999999999999999998777799999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHHHHh
Q 020765 162 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME 241 (321)
Q Consensus 162 ~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~ 241 (321)
|+++|||+||++||++|++++|.+++..+.++.||.++|+||||+||++|++ +++.+|||+|+||++||+|||++++++
T Consensus 169 ~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~-~~~~~GK~~g~Dl~egK~T~p~i~al~ 247 (334)
T 3rmg_A 169 VIRKKTAALFAACAEAAALSVQVGEEEVAFARLLGEYIGICFQIKDDIFDYF-DSKKIGKPTGNDMLEGKLTLPALYALN 247 (334)
T ss_dssp HHHHTHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC------CCHHHHTTCCCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC-ChhhcCCCchhhhhcCchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 588999999999999999999999998
Q ss_pred hC-h----HHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHH
Q 020765 242 EF-P----QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRV 316 (321)
Q Consensus 242 ~~-~----~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~~~~ 316 (321)
.. + .+.+++.+...++++++++++++.++|+++++++++++|.++|.+.|+.+|+++ .++.|..|++++
T Consensus 248 ~~~~~~~~~L~~~l~~~~~~~~~~~~v~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~lp~~~------~~~~L~~l~~~~ 321 (334)
T 3rmg_A 248 TTKDAWAEQIAFKVKEGTATPDEIVRLIEFTKDNGGIEYACRTIEQYKKKAFDLLAALPDSN------ICLALRTYLDYV 321 (334)
T ss_dssp HHCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCH------HHHHHHHHHHHH
T ss_pred hCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHH
Confidence 73 2 456677777778899999999999999999999999999999999999999888 899999999999
Q ss_pred HhccC
Q 020765 317 ITRNK 321 (321)
Q Consensus 317 ~~R~~ 321 (321)
++|.+
T Consensus 322 ~~R~~ 326 (334)
T 3rmg_A 322 VAREK 326 (334)
T ss_dssp HHCC-
T ss_pred Hhccc
Confidence 99974
No 4
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=100.00 E-value=3.5e-72 Score=528.76 Aligned_cols=320 Identities=81% Similarity=1.158 Sum_probs=254.7
Q ss_pred CCCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 020765 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (321)
Q Consensus 2 ~~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDD 81 (321)
+.+.+|.+.++++|++..|.+|||+||.|++++++++|++.+.+.+.+.+.....+..+.+..+|+++||||+|||||||
T Consensus 29 ~~~~~~~l~~~~~y~~~~g~~GKrlRp~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~avEliH~asLiHDD 108 (348)
T 3apz_A 29 VLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVRVPEALIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDD 108 (348)
T ss_dssp CCCCCC------------CCHHHHHHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCChhHHHHHHHHHhCCCCCccHHHHHHHHHHHHcCCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHhcc
Confidence 45778899999999998544599999999999999998643211000000000123345678999999999999999999
Q ss_pred hcCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHH
Q 020765 82 VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQ 161 (321)
Q Consensus 82 I~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~ 161 (321)
|||+|++|||+||+|++||++.|||+||||+++||..+++..+.++++.+++++..++.||.+|+.+..+..+++++|++
T Consensus 109 i~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~ 188 (348)
T 3apz_A 109 VLDDADTRRGVGSLNVVMGNKMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTEQRYSMDYYMQ 188 (348)
T ss_dssp C----------------CCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTCHHHHHH
T ss_pred ccCCCCCCCCCCcHHHHhCchHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999887655789999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHHHHh
Q 020765 162 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME 241 (321)
Q Consensus 162 ~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~ 241 (321)
|+++|||+||++||++|++++|.+++..+.++.||.++|+||||+||++|++++++.+|||+|+||++||+|||++++++
T Consensus 189 ~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~gd~~~~GK~~g~Dl~egK~Tlp~l~al~ 268 (348)
T 3apz_A 189 KTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGKGSLSDIRHGVITAPILFAME 268 (348)
T ss_dssp HHHHHHTHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCSCCHHHHTTCCCHHHHHHHH
T ss_pred HHHcchHHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhcCCcchhhHhCCChhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhccC
Q 020765 242 EFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRNK 321 (321)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~~~~~~R~~ 321 (321)
..+++++++.+...++++++++++++.++|+++++++++++|.++|.+.|+.+|.++.....+.++.|..|++++++|++
T Consensus 269 ~~~~~~~~l~~~~~~~~~~~~~~~~i~~~g~l~~a~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~R~~ 348 (348)
T 3apz_A 269 EFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAMEHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITRNK 348 (348)
T ss_dssp HCTTHHHHHHTTTTCTHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_pred cCHHHHHHHHhccCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHHHHHHHHhCcC
Confidence 98889999988887888999999999999999999999999999999999999987411111168899999999999975
No 5
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=100.00 E-value=1.3e-71 Score=520.69 Aligned_cols=296 Identities=26% Similarity=0.445 Sum_probs=274.9
Q ss_pred CCCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 020765 2 VVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (321)
Q Consensus 2 ~~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDD 81 (321)
+.+.+|.+.++++|++..| |||+||.|++++++ +|++.+ .+.+..+|+++||||+|||||||
T Consensus 36 ~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~-~g~~~~---------------~~~~~~~A~aiEliH~asLiHDD 97 (334)
T 3pko_A 36 VQLDNQPIHHKILALLKSG--GKLLRPGYFYLFST-FGNAAT---------------PAQLQAGAAAIEILHVGTLIHDD 97 (334)
T ss_dssp CCCSCHHHHHHHHHHHHHC--CCCHHHHHHHHHHT-TCSCCC---------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCChHHHHHHHHHHhCC--CCcHHHHHHHHHHH-HcCCCC---------------HHHHHHHHHHHHHHHHHHHHhCc
Confidence 4577899999999999989 99999999999999 664111 24578999999999999999999
Q ss_pred hcCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHH
Q 020765 82 VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYM 160 (321)
Q Consensus 82 I~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~-~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~ 160 (321)
|||+|++|||+||+|++||++.|||+||||+++||+.+++..+ +++++.+++++..++.||..|+.+..+..+++++|+
T Consensus 98 i~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~Gq~~dl~~~~~~~~~~~~yl 177 (334)
T 3pko_A 98 VIDDSPTRRGVRTIQMTYGQRNAIYAGDFMFTVYFDQVLKSTTDRSLIQNHIDAMHRILQGELHQMDLNYREDITLDAYL 177 (334)
T ss_dssp HHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCTTCCHHHHH
T ss_pred cCCCCCCcCCCccHHHHcCchHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHH
Confidence 9999999999999999999999999999999999999988654 889999999999999999999998877789999999
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHHHH
Q 020765 161 QKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAM 240 (321)
Q Consensus 161 ~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al 240 (321)
+|+++|||+||++||++|++++|.+++..+.++.||.++|+||||+||++|++++++.+|||+|+||++||+|||+++++
T Consensus 178 ~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tlp~i~al 257 (334)
T 3pko_A 178 NEIAGKTAELFALSCYQGAQLAGAPQSVIDRTRDIGIAIGCAYQMLDDILDYAGDPKRTQKPVLEDLRSGVYSLPLLLSL 257 (334)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCTTSCCHHHHHHHHTTCCCHHHHHHG
T ss_pred HHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCCCCccccCchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCh-HHHHHHH-cccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHh
Q 020765 241 EEFP-QLRTVVE-QGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVIT 318 (321)
Q Consensus 241 ~~~~-~~~~~l~-~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~~~~~~ 318 (321)
+..+ ++++++. +...++++++++++++.++|+++++++++++|.++|.+.|+.+|.++ .++.|..|++++++
T Consensus 258 ~~~~~~l~~~l~~~~~~~~~~~~~i~~li~~~ga~~~a~~~~~~~~~~A~~~L~~lp~~~------~~~~L~~l~~~~~~ 331 (334)
T 3pko_A 258 SHAPRDFHKLLKKKQAMTLEDIKHVQALVAQYDGVGAAKQLAQDYTDRALTLIQQLPVGS------AQQSLEQLTRLLLR 331 (334)
T ss_dssp GGSHHHHHHHHTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCSSH------HHHHHHHHHHHHTT
T ss_pred HhCcHHHHHHHhcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHh
Confidence 9865 6777774 34467889999999999999999999999999999999999999987 89999999999999
Q ss_pred ccC
Q 020765 319 RNK 321 (321)
Q Consensus 319 R~~ 321 (321)
|++
T Consensus 332 R~~ 334 (334)
T 3pko_A 332 RDH 334 (334)
T ss_dssp CC-
T ss_pred ccC
Confidence 975
No 6
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=100.00 E-value=7.4e-72 Score=525.14 Aligned_cols=296 Identities=25% Similarity=0.352 Sum_probs=271.2
Q ss_pred CCCCchhHHHHHHHHH-----------hCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHH
Q 020765 2 VVAEVPKLASAAEYFF-----------KMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITE 70 (321)
Q Consensus 2 ~~~~~~~l~~~~~y~~-----------~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vE 70 (321)
|.+.+|.+.+++.|++ ..| |||+||+|++++++++|++. +.+..+|+++|
T Consensus 24 v~~~~~~l~~~~~y~~~~~~~~~~~~~~~g--GKrlRp~l~ll~~~~~g~~~-----------------~~~~~~A~avE 84 (352)
T 3nf2_A 24 VDRLAPPMDTVAAYHFGWIDAQGNPADGDG--GKAVRPALAVLSAEVTGAAP-----------------EVGVPGAVAVE 84 (352)
T ss_dssp HHTSCTTHHHHHHHHTTSBCTTSCBCCCCC--CCCHHHHHHHHHHHTTTCCG-----------------GGGHHHHHHHH
T ss_pred HcccChHHHHHHHHHhcccccccccCcCCC--cccHHHHHHHHHHHHcCCCH-----------------HHHHHHHHHHH
Confidence 4577899999999999 567 99999999999999998632 23778999999
Q ss_pred HHHHHHHHHhhhcCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHhhhHhhhc
Q 020765 71 MIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT---EVVTLLATVVEHLVTGETMQMT 147 (321)
Q Consensus 71 llh~asLihDDI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~---~~~~~~~~~~~~~~~Gq~~d~~ 147 (321)
|||+||||||||||+|++|||+||+|++||++.|||+||||+++||+.+++.+++ ++++.+++++..++.||++|+.
T Consensus 85 liH~asLiHDDI~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~GQ~~dl~ 164 (352)
T 3nf2_A 85 LVHNFSLLHDDLMDGDEQRRHRDTVWKVHGPAQAILVGDALFALANEVLLELGTVEAGRATRRLTKASRSLIDGQAQDIS 164 (352)
T ss_dssp HHHHHHHHHHHHHHTCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998776 7899999999999999999999
Q ss_pred ccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHh
Q 020765 148 TSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDI 227 (321)
Q Consensus 148 ~~~~~~~s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl 227 (321)
+..+..+++++|++|+++|||+||++||++|++++|.+++..+.++.||.++|+||||+||++|++++++.+|||+|+||
T Consensus 165 ~~~~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~ld~~gd~~~~GK~~g~Dl 244 (352)
T 3nf2_A 165 YEHRDRVSVEECLEMEGNKTGALLACASSIGAVLGGADERTADTLEKYGYHLGLAFQAVDDLLGIWGDPDATGKQTWSDL 244 (352)
T ss_dssp HTTCSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHSSCTTHHH
T ss_pred cccCCCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCcCccc
Confidence 98777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCcHHHHHHHhhC-h---HHHHHHHcc-------cCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCC
Q 020765 228 RHGIITAPILFAMEEF-P---QLRTVVEQG-------FEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPE 296 (321)
Q Consensus 228 ~egk~Tlp~l~al~~~-~---~~~~~l~~~-------~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~ 296 (321)
++||+|||++++++.. + ++.+++.+. ..+++++++++++++++|+++++++++++|.++|.+.|+.+|+
T Consensus 245 ~egK~Tlpvi~al~~~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~li~~~g~~~~a~~~a~~~~~~A~~~L~~lp~ 324 (352)
T 3nf2_A 245 RQRKKSLPVVAALAAGGAASERLGEILTADAKASDFANFSEEEFAARAALIEEAGGREWTADEARRQHTIAIEALDAVDM 324 (352)
T ss_dssp HTTCCCHHHHHHHHHCSHHHHHHHHHHHHHHTCTTGGGCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred ccCCccHHHHHHHHhCChHHHHHHHHHhccccccccCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999999974 3 455666543 3467889999999999999999999999999999999999997
Q ss_pred CCCcchHHHHHHHHHHHHHHHhccC
Q 020765 297 NNDEDVTKSRRALLDLTHRVITRNK 321 (321)
Q Consensus 297 ~~~~~~~~~~~~L~~l~~~~~~R~~ 321 (321)
++ .+|+.|..|++++++|..
T Consensus 325 ~~-----~~r~~L~~la~~~~~R~~ 344 (352)
T 3nf2_A 325 PD-----RVRDRFTALADFVVVRKR 344 (352)
T ss_dssp CH-----HHHHHHHHHHHHHCC---
T ss_pred Cc-----HHHHHHHHHHHHHHhccc
Confidence 43 289999999999999963
No 7
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=100.00 E-value=1.5e-71 Score=523.30 Aligned_cols=293 Identities=30% Similarity=0.449 Sum_probs=254.2
Q ss_pred CCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 020765 3 VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82 (321)
Q Consensus 3 ~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI 82 (321)
.+.+|.|.++++|++..| |||+||.|++++++++|.... +.+..+|++|||||+||||||||
T Consensus 56 ~~~~~~l~~~~~y~~~~g--GKrlRp~L~ll~~~~~~~~~~----------------~~~~~~A~avEliH~asLIHDDI 117 (360)
T 3lmd_A 56 SSGEDFLVDIVMHLTRAG--GKRFRPMFALLASEFGEKPLS----------------ENVIKAAVVVEITHLATLYHDDV 117 (360)
T ss_dssp TCSCHHHHHHHHHHCCCC--SCCHHHHHHHHHHTTSSSTTC----------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHCC--CCcHHHHHHHHHHHHhCCCCh----------------HHHHHHHHHHHHHHHHHHHhCCC
Confidence 467899999999999989 999999999999999872211 34788999999999999999999
Q ss_pred cCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHHH
Q 020765 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQK 162 (321)
Q Consensus 83 ~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~~ 162 (321)
||+|++|||+||+|++||++.|||+||||+++||+.+++.+ +++++.+++++..++.||.+|+.+..+. +++++|++|
T Consensus 118 mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~-~~~~~~~~~~~~~~~~GQ~ldl~~~~~~-~t~~~y~~~ 195 (360)
T 3lmd_A 118 MDEASMRRGVPSANARWDNSVAILAGDILLAHASGLMSQLG-TDTVAHFAETFGELVTGQMRETVGPRDT-DPIEHYTNV 195 (360)
T ss_dssp HC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHCCTTS-CHHHHHHHH
T ss_pred cCCCCCCCCCCcHHhhcChHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHhccCCC-CCHHHHHHH
Confidence 99999999999999999999999999999999999998875 5899999999999999999999998776 899999999
Q ss_pred HhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHHHHhh
Q 020765 163 TYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE 242 (321)
Q Consensus 163 ~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~ 242 (321)
+++|||+||++||++|++++|++++..+.++.||.++|+||||+||++|++++++.+|||.|+||++||+|||++++++.
T Consensus 196 i~~KTg~L~~~a~~lga~laga~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~egK~Tlp~l~al~~ 275 (360)
T 3lmd_A 196 IREKTGVLIASAGYLGAMHAGAAPEHIDALKNFGAAVGMIFQIVDDIIDIFSETHESGKTPGTDLREGVFTLPVLYALRE 275 (360)
T ss_dssp HHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------CCHHHHHTCCCHHHHHHHHC
T ss_pred HHhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhhCCCchhHHhcCCchHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred Ch----HHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHh
Q 020765 243 FP----QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVIT 318 (321)
Q Consensus 243 ~~----~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~~~~~~ 318 (321)
.+ ++++++.+...+++++++++++++++|+++++++++++|.++|.+.|+.+|+++ .++.|..|++++++
T Consensus 276 ~~~~~~~L~~~l~~~~~~~~~~~~~~~ll~~~gal~~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L~~La~~~~~ 349 (360)
T 3lmd_A 276 DTPVGAELRDILTGPLEDDETVNHVLELLSQSGGRQAALDEVYRYMDIANAELDRLPDST------VKEALRNLATFTVK 349 (360)
T ss_dssp CSHHHHHHHHHCSSCCCSHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHTTSCCSH------HHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHcCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHH
Confidence 42 456666666667889999999999999999999999999999999999999987 89999999999999
Q ss_pred ccC
Q 020765 319 RNK 321 (321)
Q Consensus 319 R~~ 321 (321)
|+.
T Consensus 350 R~~ 352 (360)
T 3lmd_A 350 RVG 352 (360)
T ss_dssp TTS
T ss_pred hcc
Confidence 974
No 8
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.6e-71 Score=520.72 Aligned_cols=294 Identities=30% Similarity=0.384 Sum_probs=270.3
Q ss_pred CCC-chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 020765 3 VAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (321)
Q Consensus 3 ~~~-~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDD 81 (321)
.+. +|.+.++++|++..| |||+||.|++++++++|++. +.+..+|+++||||+|||||||
T Consensus 27 ~~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~g~~~-----------------~~~~~~A~avEliH~asLiHDD 87 (342)
T 1wy0_A 27 PEKDPRVLYEAARHYPLAG--GKRVRPFVVLTSTEAVGGDP-----------------LRAIYPAVAIELIHNYSLVHDD 87 (342)
T ss_dssp CSCSSHHHHHHHHHTGGGT--CCCHHHHHHHHHTTTTTSCG-----------------GGGHHHHHHHHHHHHHHHHHHH
T ss_pred cccCcHHHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCCH-----------------HHHHHHHHHHHHHHHHHHHHCC
Confidence 344 789999999999989 99999999999999997632 2367899999999999999999
Q ss_pred hcCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCH
Q 020765 82 VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSM 156 (321)
Q Consensus 82 I~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~-----~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~ 156 (321)
|||+|++|||+||+|.+||++.|||+||||+++||+.+++. .+.++++.+++++..++.||.+|+.+..+..+++
T Consensus 88 i~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~ 167 (342)
T 1wy0_A 88 IMDMDETRRGKPTVHRIWGVNMAILAGDLLFSKAFEAVARAEIPPEKKARVLEVIVKASNELCEGQARDLEFEKKSTVTI 167 (342)
T ss_dssp HHHTCCCSTTSCCHHHHHCHHHHHHHHHHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCH
T ss_pred cccCCCCCCCCCccccccChhHHHHHHHHHHHHHHHHHHHcccCcccHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCH
Confidence 99999999999999999999999999999999999999987 3467899999999999999999999987777899
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHH
Q 020765 157 DYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPI 236 (321)
Q Consensus 157 ~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~ 236 (321)
++|++|+++|||+||++||++|++++|.+++..+.++.||.++|+||||+||++|++++++.+|||+|+||++||+|||+
T Consensus 168 ~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~egK~Tlp~ 247 (342)
T 1wy0_A 168 EEYMEMISGKTGALFEASAKVGGIIGTDNEEYIKALSSWGRNVGIAFQIWDDVLDLIADEKKLGKPVGSDIRKGKKTLIV 247 (342)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTSCSCHHHHHTCCCHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhHHhCCCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhC-hHHHHHHHcccC---------------ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCc
Q 020765 237 LFAMEEF-PQLRTVVEQGFE---------------DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDE 300 (321)
Q Consensus 237 l~al~~~-~~~~~~l~~~~~---------------~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~ 300 (321)
+++++.. ++.++.+.+.+. ++++++++++++.++|+++++++++++|.++|.+.|+.+|+++
T Consensus 248 i~al~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~~~-- 325 (342)
T 1wy0_A 248 AHFFENADEKDKQRFLKIFGKYAGDVKGRGIIEEDIKSDVMEAIDLLKKYGSIDYAAEIAKDMIKKANEALRILPKSK-- 325 (342)
T ss_dssp HHHHHHCCHHHHHHHHHTSCC-------------CHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTGGGSCCCH--
T ss_pred HHHHHhCCHhHHHHHHHHHcccccccccccccccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCcH--
Confidence 9999975 445555554443 2568899999999999999999999999999999999999877
Q ss_pred chHHHHHHHHHHHHHHHhccC
Q 020765 301 DVTKSRRALLDLTHRVITRNK 321 (321)
Q Consensus 301 ~~~~~~~~L~~l~~~~~~R~~ 321 (321)
.++.|..|++++++|++
T Consensus 326 ----~~~~L~~l~~~~~~R~~ 342 (342)
T 1wy0_A 326 ----ARMDLELLAKFIVEREY 342 (342)
T ss_dssp ----HHHHHHHHHHHTTTCC-
T ss_pred ----HHHHHHHHHHHHHhccC
Confidence 89999999999999974
No 9
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=100.00 E-value=1.6e-70 Score=512.65 Aligned_cols=292 Identities=28% Similarity=0.433 Sum_probs=270.6
Q ss_pred CCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 020765 3 VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82 (321)
Q Consensus 3 ~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI 82 (321)
.+.+|.+.++++|++..| |||+||.+++++++++|++. +.+..+|+++||+|+||||||||
T Consensus 26 ~~~~~~l~~~~~~~~~~g--GKr~Rp~l~l~~~~~~g~~~-----------------~~~~~~A~avEliH~asLiHDDi 86 (325)
T 3aqb_B 26 QSDSETINKAAHHILSSG--GKRVRPMFVLLSGFLNDTQK-----------------DDLIRTAVSLELVHMASLVHDDY 86 (325)
T ss_dssp CCSSHHHHHHHHHHHHSC--CCCHHHHHHHHHHTTSSCCC-----------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCh-----------------HHHHHHHHHHHHHHHHHHHhCcc
Confidence 456789999999999989 99999999999999997631 24788999999999999999999
Q ss_pred cCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHHH
Q 020765 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQK 162 (321)
Q Consensus 83 ~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~~ 162 (321)
||+|++|||+||+|.+||++.|||+||||+++|++.+++..+.++++.+++++..++.||.+|+.+..+..+++++|++|
T Consensus 87 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~ 166 (325)
T 3aqb_B 87 IDNSDMRRGNTSVHIAFDKDTAIRTGHFLLARALQNIATINNSKFHQIFSKTILEVCFGEFDQMADRFNYPVSFTAYLRR 166 (325)
T ss_dssp HHTCCEETTEECHHHHTCHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred ccCCCCCCCCCCcccccChHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999988889999999999999999999999987777899999999
Q ss_pred HhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHHHHhh
Q 020765 163 TYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE 242 (321)
Q Consensus 163 ~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~ 242 (321)
+++|||+||++||++|++++|.+++..+.++.||.++|+||||+||++|++++++.+|||+|+||++||+|||++++++.
T Consensus 167 i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gk~T~p~i~al~~ 246 (325)
T 3aqb_B 167 INRKTAILIEASCHLGALSSQLDEQSTYHIKQFGHCIGMSYQIIDDILDYTSDEATLGKPVGSDIRNGHITYPLMAAIAN 246 (325)
T ss_dssp HHHHTHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHTTCCCHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCccchHhhCCCccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred Ch-----HHH---HHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHH
Q 020765 243 FP-----QLR---TVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTH 314 (321)
Q Consensus 243 ~~-----~~~---~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~~ 314 (321)
.+ .+. +++.+.. .+++++++++++.++ +++++++.+++|.++|.+.|+.+|.++ .++.|..+++
T Consensus 247 ~~~~~~~~l~~~~~~~~~~~-~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~A~~~L~~lp~~~------~~~~L~~l~~ 318 (325)
T 3aqb_B 247 LKEQDDDKLEAVVKHLTSTS-DDEVYQYIVSQVKQY-GIEPAELLSRKYGDKAKYHLSQLQDSN------IKDYLEEIHE 318 (325)
T ss_dssp HHHTTCCHHHHHHHTCCTTC-CHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHTSCCCH------HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHH
Confidence 43 233 4433322 267899999999999 999999999999999999999999987 8999999999
Q ss_pred HHHhccC
Q 020765 315 RVITRNK 321 (321)
Q Consensus 315 ~~~~R~~ 321 (321)
++++|++
T Consensus 319 ~~~~R~~ 325 (325)
T 3aqb_B 319 KMLKRVY 325 (325)
T ss_dssp HHTTTTC
T ss_pred HHHhCcC
Confidence 9999975
No 10
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=100.00 E-value=8e-70 Score=512.74 Aligned_cols=288 Identities=26% Similarity=0.382 Sum_probs=259.7
Q ss_pred chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 020765 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDD 85 (321)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI~D~ 85 (321)
+|.+.++++|++..| |||+||.|++++++++|++. +.+..+|+++||||+||||||||||+
T Consensus 30 ~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~aiEliH~asLiHDDI~D~ 90 (358)
T 4dhd_A 30 AEDFREAVLYQVKTG--GKRLRPLLTLAAAEAVSGQW-----------------RPALPAAAIVELIHNYSLIYDDIIDR 90 (358)
T ss_dssp CHHHHHHHHGGGSSC--CCCHHHHHHHHHHHHHHSCC-----------------GGGHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHCccccC
Confidence 789999999999989 99999999999999998642 23678999999999999999999999
Q ss_pred CCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhhhHhhhccc-----------CCC-
Q 020765 86 ADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVTLLATVVEHLVTGETMQMTTS-----------SDQ- 152 (321)
Q Consensus 86 s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~-~~~~~~~~~~~~~~~~Gq~~d~~~~-----------~~~- 152 (321)
|++|||+||+|++||++.|||+||||+++||+.+..... .++++.+++++..++.||.+|+.+. .+.
T Consensus 91 s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~ 170 (358)
T 4dhd_A 91 GDVRRGLPTVRKAFGDNAAILVGIWYREAIEEAVLDTPKPTLFAKEVAEVIKAIDEGERLDILFEAAGRSDPYFVQARWR 170 (358)
T ss_dssp CCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHTBSSCCCCHHHHHTCCS
T ss_pred CCCcCCCccHHHhcCHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccCCC
Confidence 999999999999999999999999999999999976544 6899999999999999999999987 444
Q ss_pred CCCHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccC
Q 020765 153 RCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII 232 (321)
Q Consensus 153 ~~s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~ 232 (321)
.+++++|++|+++|||+||++||++|++++|.+++..+.++.||.++|+||||+||++|++++++.+|||+|+||++||+
T Consensus 171 ~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DD~lD~~gd~~~~GK~~g~Dl~egK~ 250 (358)
T 4dhd_A 171 EVTLDDYIKMVSLKTGALIAAAAKWGVLSVSDDRGLAEAAWNFGMAAGVAFQIIDDVLDIYGDPKKFGKEIGKDIKEHKR 250 (358)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CTTHHHHTTBS
T ss_pred CCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCCCchhhHhcCCh
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -cHHHHHHHhhC-h----HHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHH
Q 020765 233 -TAPILFAMEEF-P----QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSR 306 (321)
Q Consensus 233 -Tlp~l~al~~~-~----~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~ 306 (321)
|||++++++.. + .+.+++.+...++++++++++++.++|+++++++++++|.++|.+.|+.+|+++
T Consensus 251 ~T~p~i~al~~~~~~~~~~L~~~l~~~~~~~~~~~~i~~li~~~gai~~a~~~a~~~~~~A~~~L~~lp~~~-------- 322 (358)
T 4dhd_A 251 GNAVVAVALSHLGEGERRRLLEILAREVVEEADVREAVALLDSVGAREEALRLAARYREEAERHLAKIPNNG-------- 322 (358)
T ss_dssp CSHHHHHHHHHSCHHHHHHHHHHHHCSSCCHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHTTSSSCH--------
T ss_pred hhHHHHHHHHhCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCH--------
Confidence 99999999974 3 356667666667889999999999999999999999999999999999999542
Q ss_pred HHHHHHHHHHHhccC
Q 020765 307 RALLDLTHRVITRNK 321 (321)
Q Consensus 307 ~~L~~l~~~~~~R~~ 321 (321)
.|.+|++++++|++
T Consensus 323 -~L~~la~~~~~R~~ 336 (358)
T 4dhd_A 323 -TLKELLDFIVAREY 336 (358)
T ss_dssp -HHHHHHHHHTTTTT
T ss_pred -HHHHHHHHHHhccc
Confidence 79999999999974
No 11
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=100.00 E-value=5.1e-70 Score=510.33 Aligned_cols=291 Identities=26% Similarity=0.259 Sum_probs=263.6
Q ss_pred CCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 020765 3 VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82 (321)
Q Consensus 3 ~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI 82 (321)
.+.+|.+.++++|++..| |||+||.|++++++++|++ .+.+..+|+++||||+||||||||
T Consensus 21 ~~~~~~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~~~~-----------------~~~~~~~A~avEliH~asLihDDi 81 (330)
T 1wmw_A 21 DHPDPLYRDLLQDYPRRG--GKMLRGLLTVYSALAHGAP-----------------LEAGLEAATALELFQNWVLVHDDI 81 (330)
T ss_dssp CCSSHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCC-----------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHhCC--CccHHHHHHHHHHHHcCCC-----------------HHHHHHHHHHHHHHHHHHHHHccc
Confidence 456789999999999989 9999999999999999752 134788999999999999999999
Q ss_pred cCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHhhhHhhhcc-cCC-CCCC
Q 020765 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK-----NTEVVTLLATVVEHLVTGETMQMTT-SSD-QRCS 155 (321)
Q Consensus 83 ~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~-----~~~~~~~~~~~~~~~~~Gq~~d~~~-~~~-~~~s 155 (321)
||+|++|||+||+|++||++.|||+||||+++|++.+++.. ..++++.+++++..++.||.+|+.+ ..+ ..++
T Consensus 82 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~ 161 (330)
T 1wmw_A 82 EDGSEERRGRPALHRLHPMPLALNAGDAMHAEMWGLLAEGLARGLFPPEVLLEFHEVVRRTAYGQHLDLLWTLGGTFDLR 161 (330)
T ss_dssp HHTCCEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCC
T ss_pred ccCCCCCCCCCccccccCchHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 99999999999999999999999999999999999998743 2689999999999999999999998 766 5789
Q ss_pred HHHHHHHHhhhhHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcH
Q 020765 156 MDYYMQKTYYKTASL-ISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITA 234 (321)
Q Consensus 156 ~~~y~~~~~~KTa~l-~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tl 234 (321)
+++|++|+++|||+| |++||++|++++|.+++.. ++.||.++|+||||+||++|++++++ +|||+|+||++||+||
T Consensus 162 ~~~y~~~i~~KTa~Ls~~~~~~~ga~lag~~~~~~--l~~~g~~lG~aFQi~DD~ld~~~d~~-~GK~~g~Dl~egK~T~ 238 (330)
T 1wmw_A 162 PEDYFRMVAHKAAYYTAVAPLRLGALLAGKTPPAA--YEEGGLRLGTAFQIVDDVLNLEGGEA-YGKERAGDLYEGKRTL 238 (330)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCCCHH--HHHHHHHHHHHHHHHHHHHHHSCSCC-CSSSTTHHHHHTCCCH
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHcCCCHHHH--HHHHHHHHHHHHHHHHccCcccCCcc-cCCCcCchhhCCCCCH
Confidence 999999999999999 9999999999999987766 99999999999999999999999999 9999999999999999
Q ss_pred HHHHHHhhCh-HHHHHHHcc----cCC--hhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhc----cCCCCCCcchH
Q 020765 235 PILFAMEEFP-QLRTVVEQG----FED--SSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAID----SLPENNDEDVT 303 (321)
Q Consensus 235 p~l~al~~~~-~~~~~l~~~----~~~--~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~----~l~~~~~~~~~ 303 (321)
|++++++..+ +.++.+.+. ..+ +++++++++++.++|+++++++++++|.++|.+.|+ .+|.++
T Consensus 239 p~i~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~a~~~~~~~~~~A~~~L~~~i~~lp~~~----- 313 (330)
T 1wmw_A 239 ILLRFLEEAPPEERARALALLALPREAKPEAEVGWLLERLLASRALAWAKAEAKRLQAEGLALLEAAFQDLPGKE----- 313 (330)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHTSCGGGSCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTGGGGCSCHH-----
T ss_pred HHHHHHHhCCHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCcH-----
Confidence 9999998854 444444332 223 678999999999999999999999999999999999 999876
Q ss_pred HHHHHHHHHHHHHHhccC
Q 020765 304 KSRRALLDLTHRVITRNK 321 (321)
Q Consensus 304 ~~~~~L~~l~~~~~~R~~ 321 (321)
.++.|..|++++++|++
T Consensus 314 -~~~~L~~l~~~~~~R~~ 330 (330)
T 1wmw_A 314 -ALDHLRGLLAALVERRA 330 (330)
T ss_dssp -HHHHHHHHHHHHHHC--
T ss_pred -HHHHHHHHHHHHHhccC
Confidence 89999999999999975
No 12
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=100.00 E-value=5.6e-69 Score=496.52 Aligned_cols=289 Identities=21% Similarity=0.263 Sum_probs=254.2
Q ss_pred CCCCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHh
Q 020765 1 MVVAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHD 80 (321)
Q Consensus 1 ~~~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihD 80 (321)
++.+.+|.|.++++|++..| |||+||.|++++++++|.+. +.+..+|+++||||+||||||
T Consensus 5 ~~~~~~~~l~~~~~y~~~~g--GKr~Rp~l~l~~~~~~~~~~-----------------~~~~~~A~avEliH~asLiHD 65 (301)
T 2q80_A 5 TQETVQRILLEPYKYLLQLP--GKQVRTKLSQAFNHWLKVPE-----------------DKLQIIIEVTEMLHNASLLID 65 (301)
T ss_dssp --CCHHHHHTHHHHHHTTSS--CHHHHHHHHHHHHHHHCCCH-----------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHhCC--CccHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHc
Confidence 35678899999999999989 99999999999999997521 347889999999999999999
Q ss_pred hhcCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCC-CCCHHHH
Q 020765 81 DVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQ-RCSMDYY 159 (321)
Q Consensus 81 DI~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~-~~s~~~y 159 (321)
||||+|++|||+||+|.+||++.|||+||||+++|++.+++.+++++++.+++++..++.||.+|+.+..+. .+++++|
T Consensus 66 Di~D~s~~RRG~pt~h~~~G~~~AIl~GD~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~~y 145 (301)
T 2q80_A 66 DIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEY 145 (301)
T ss_dssp HHHHTCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred cccCCCCCCCCCcchhhccCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Confidence 999999999999999999999999999999999999999998778889999999999999999999885443 6899999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHHH
Q 020765 160 MQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 239 (321)
Q Consensus 160 ~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~a 239 (321)
++|+++|||+||++||++|+++++.++ .+..||.++|+||||+||++|++++++.+|||+|+||++||+|||++++
T Consensus 146 ~~~i~~KTa~L~~~~~~~ga~~a~~~~----~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~T~p~i~a 221 (301)
T 2q80_A 146 KAMVLQKTGGLFGLAVGLMQLFSDYKE----DLKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHA 221 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCCCS----CCHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCChH----HHHHHHHHHHHHHHHHHHHhhhcCChhhhCCCccchhhcCCcHHHHHHH
Confidence 999999999999999999999999873 4899999999999999999999999999999999999999999999999
Q ss_pred HhhCh---HHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHH
Q 020765 240 MEEFP---QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRV 316 (321)
Q Consensus 240 l~~~~---~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~~~~ 316 (321)
++..+ ++.+++.+...+++..+.+++++.++|+++++++++++|.++|.+.|+.+|.++ .|..+++++
T Consensus 222 l~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~g~~~~a~~~~~~~~~~A~~~L~~l~~~~---------~L~~l~~~l 292 (301)
T 2q80_A 222 IWSRPESTQVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNP---------ELVALVKHL 292 (301)
T ss_dssp HHHSTTCCHHHHHHHHTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCH---------HHHHHHHHH
T ss_pred HHcCccchHHHHHHhcCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHcCCCCH---------HHHHHHHHH
Confidence 98754 466666555444444455999999999999999999999999999999999776 399999999
Q ss_pred HhccC
Q 020765 317 ITRNK 321 (321)
Q Consensus 317 ~~R~~ 321 (321)
..|.+
T Consensus 293 ~~~~~ 297 (301)
T 2q80_A 293 SKMFK 297 (301)
T ss_dssp HTTCC
T ss_pred HHHhc
Confidence 88864
No 13
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=100.00 E-value=1.1e-68 Score=502.74 Aligned_cols=295 Identities=19% Similarity=0.288 Sum_probs=233.6
Q ss_pred CCCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 020765 3 VAEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82 (321)
Q Consensus 3 ~~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI 82 (321)
.+.++.+.++++|++..| |||+||.|++++++++|.+. +.+..+|+++||||+||||||||
T Consensus 22 ~~~~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~~~~~-----------------~~~~~~A~avEliH~asLiHDDI 82 (340)
T 2e8v_A 22 SQNESLISKPYNHILLKP--GKNFRLNLIVQINRVMNLPK-----------------DQLAIVSQIVELLHNSSLLIDDI 82 (340)
T ss_dssp HHHHHHHHHHHHHHHTSC--CCCHHHHHHHHHHHHHCCCH-----------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHhCC--CccHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHhCcc
Confidence 345788999999999989 99999999999999997521 34788999999999999999999
Q ss_pred cCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCCHH-----HHHHHHHHHHHHHhhhHhhhcccCCC---CC
Q 020765 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTE-----VVTLLATVVEHLVTGETMQMTTSSDQ---RC 154 (321)
Q Consensus 83 ~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~-----~~~~~~~~~~~~~~Gq~~d~~~~~~~---~~ 154 (321)
||+|++|||+||+|.+||++.|||+||||+++|++.+++...+. +++.+++++..++.||++|+.+..+. .+
T Consensus 83 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~ 162 (340)
T 2e8v_A 83 EDNAPLRRGQTTSHLIFGVPSTINTANYMYFRAMQLVSQLTTKEPLYHNLITIFNEELINLHRGQGLDIYWRDFLPEIIP 162 (340)
T ss_dssp HTTCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCCC
T ss_pred ccCCCCCCCCcchhhccCchHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Confidence 99999999999999999999999999999999999999887665 89999999999999999999886543 57
Q ss_pred CHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcH
Q 020765 155 SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITA 234 (321)
Q Consensus 155 s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tl 234 (321)
++++|++|+++|||+||++||++|++++|.++ ..+.+..||.++|+||||+||++|++++++.+|||+|+||++||+||
T Consensus 163 t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~-~~~~l~~~g~~lG~aFQi~DD~ld~~~~~~~~GK~~g~Dl~egK~Tl 241 (340)
T 2e8v_A 163 TQEMYLNMVMNKTGGLFRLTLRLMEALSPSSH-HGHSLVPFINLLGIIYQIRDDYLNLKDFQMSSEKGFAEDITEGKLSF 241 (340)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHC-----CCCTTHHHHTTCCCH
T ss_pred CHHHHHHHHHhhhHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchhhHhcCCchH
Confidence 99999999999999999999999999999987 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhChH---------HHHHHHcccCChhHHHHHHHHHH-hcchHHHHHHHHHHHHHHHHHH-----hccCCCCCC
Q 020765 235 PILFAMEEFPQ---------LRTVVEQGFEDSSNVDIALEYLG-KSRGIQKTRELAVKHANLAAAA-----IDSLPENND 299 (321)
Q Consensus 235 p~l~al~~~~~---------~~~~l~~~~~~~~~~~~i~~~i~-~~g~~~~~~~~~~~~~~~a~~~-----l~~l~~~~~ 299 (321)
|++++++..+. +.+++.+...+++..+++++++. ++|+++++++++++|.++|.+. |+.+|+++.
T Consensus 242 p~i~al~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~l~~~~ga~~~~~~~~~~~~~~A~~~~~~~~L~~lp~~~~ 321 (340)
T 2e8v_A 242 PIVHALNFTKTKGQTEQHNEILRILLLRTSDKDIKLKLIQILEFDTNSLAYTKNFINQLVNMIKNDNENKYLPDLASHSD 321 (340)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHhCcccccchhHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhccCcccHhhCCCCcc
Confidence 99999987432 55566554444455568999999 9999999999999999999999 999997751
Q ss_pred cchHHHHHHHHHHHHHHHh
Q 020765 300 EDVTKSRRALLDLTHRVIT 318 (321)
Q Consensus 300 ~~~~~~~~~L~~l~~~~~~ 318 (321)
. ...+|+.|..|++++.+
T Consensus 322 ~-~~~~~~~L~~l~~~l~~ 339 (340)
T 2e8v_A 322 T-ATNLHDELLYIIDHLSE 339 (340)
T ss_dssp -------------------
T ss_pred c-cHHHHHHHHHHHHHHHh
Confidence 0 01168899999998865
No 14
>3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A*
Probab=100.00 E-value=1.3e-67 Score=500.68 Aligned_cols=295 Identities=24% Similarity=0.319 Sum_probs=247.9
Q ss_pred hHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 020765 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDAD 87 (321)
Q Consensus 8 ~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI~D~s~ 87 (321)
.+.+++.|++..| |||+||+|++++++++|+..+.. ...+.++.+|+++||||++|||||||||+|+
T Consensus 49 ~l~~~~~~~~~~g--GKrlRp~l~l~~~~~~g~~~~~~-----------~~~~~~~~~AaaiEliH~asLIHDDImD~s~ 115 (380)
T 3lk5_A 49 DAVAHLRSFVLNG--GKRIRPLYAWAGFLAAQGHKNSS-----------EKLESVLDAAASLEFIQACALIHDDIIDSSD 115 (380)
T ss_dssp HHHHHHHHHHHSC--CCCHHHHHHHHHHHHHHTTSCCS-----------SCHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHhCC--CcchhHHHHHHHHHHcCCCcccc-----------CCHHHHHHHHHHHHHHHHHHHHHCCCcCCCC
Confidence 3677788888889 99999999999999998631110 1135688999999999999999999999999
Q ss_pred CCCCcCchhhh----------------cChhHHHHHHHHHHHHHHHHHHcCCC-----HHHHHHHHHHHHHHHhhhHhhh
Q 020765 88 TRRGIGSLNFV----------------MGNKLAVLAGDFLLSRACVALASLKN-----TEVVTLLATVVEHLVTGETMQM 146 (321)
Q Consensus 88 ~RRG~pt~~~~----------------~G~~~Ail~Gd~l~~~a~~~l~~~~~-----~~~~~~~~~~~~~~~~Gq~~d~ 146 (321)
+|||+||+|++ ||++.|||+||||+++|++++++... ..+++.++.+...++.||++|+
T Consensus 116 ~RRG~pt~h~~f~~~~~~~~~~~~~~~~G~~~AIL~GD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl 195 (380)
T 3lk5_A 116 TRRGAPTVHRAVEADHRANNFEGDPEHFGVSVSILAGDMALVWAEDMLQDSGLSAEALARTRDAWRGMRTEVIGGQLLDI 195 (380)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcchhHHHHHhhhhcccccchhhcCHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997 59999999999999999999998642 3567778888889999999999
Q ss_pred cccCCCCCCHHHHHHHHhhhhHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchh
Q 020765 147 TTSSDQRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLS 225 (321)
Q Consensus 147 ~~~~~~~~s~~~y~~~~~~KTa~l-~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~ 225 (321)
.+..+..+++++|++|+++|||+| |+.||++|++++|++++..+.++.||.++|+||||+||++|++++++.+|||+|+
T Consensus 196 ~~~~~~~~s~~~y~~ii~~KTa~L~~~~~~~~Ga~laga~~~~~~~l~~~G~~lG~AFQI~DDiLd~~gd~~~~GK~~g~ 275 (380)
T 3lk5_A 196 YLESHANESVELADSVNRFKTAAYTIARPLHLGASIAGGSPQLIDALLHYGHDIGIAFQLRDDLLGVFGDPAITGKPAGD 275 (380)
T ss_dssp HHHHTTCCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTH
T ss_pred HhccCCCCCHHHHHHHHHhhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhhCCCchh
Confidence 988777789999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCcHHHHHHHhhC----hHHHHHHHcc---cCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 020765 226 DIRHGIITAPILFAMEEF----PQLRTVVEQG---FEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 298 (321)
Q Consensus 226 Dl~egk~Tlp~l~al~~~----~~~~~~l~~~---~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~ 298 (321)
||++||+|||++++++.. |+.++.+.+. ..++++++++++++.++|+++++++++++|.++|.+.|+.+|.++
T Consensus 276 Dl~egK~T~p~i~al~~~~~~~~~~~~~L~~~l~~~~~~~~~~~v~~li~~~Ga~~~~~~~~~~~~~~A~~~L~~lp~~~ 355 (380)
T 3lk5_A 276 DIREGKRTVLLALALQRADKQSPEAATAIRAGVGKVTSPEDIAVITEHIRATGAEEEVEQRISQLTESGLAHLDDVDIPD 355 (380)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCHHHHHHHHHHTTTCCSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHGGGSCCCH
T ss_pred hHhcCCchHHHHHHHHhCccCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 999999999999999873 3444444332 246788999999999999999999999999999999999999643
Q ss_pred CcchHHHHHHHHHHHHHHHhcc
Q 020765 299 DEDVTKSRRALLDLTHRVITRN 320 (321)
Q Consensus 299 ~~~~~~~~~~L~~l~~~~~~R~ 320 (321)
.+|+.|..|++++..|+
T Consensus 356 -----~~r~~L~~La~~~~~~~ 372 (380)
T 3lk5_A 356 -----EVRAQLRALAIRSTERR 372 (380)
T ss_dssp -----HHHHHHHHHHHHHHC--
T ss_pred -----HHHHHHHHHHHHHHHhh
Confidence 28999999999999885
No 15
>3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori}
Probab=100.00 E-value=1.8e-67 Score=488.45 Aligned_cols=277 Identities=28% Similarity=0.354 Sum_probs=234.8
Q ss_pred HHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCcC
Q 020765 14 EYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRRGIG 93 (321)
Q Consensus 14 ~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI~D~s~~RRG~p 93 (321)
.|.+..| |||+||.|++++++..+ . .-..+.+..+|+++||||+||||||||||+|++|||+|
T Consensus 28 ~y~~~~g--GKrlRp~l~l~~~~~~~----~-----------~~~~~~~~~~A~aiEliH~asLiHDDi~D~s~~RRG~p 90 (315)
T 3tc1_A 28 LFSKIGP--SKMLRSKLMLALLNEKT----D-----------AILLDKALNLCTIVEMIQTASLLHDDVIDKATMRRKLP 90 (315)
T ss_dssp HHTTCCC--CCCHHHHHHHTTCCTTC----C-----------HHHHHHHHHHHHHHHHHHHHHHHHHHTC----------
T ss_pred HHHhcCC--cccHHHHHHHHHhccCc----c-----------ccchhhHHHHHHHHHHHHHHHHHHcCCCCCCCCcCCCc
Confidence 5777778 99999999999888321 1 01135678999999999999999999999999999999
Q ss_pred chhhhcChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHHHHhhhhHHHHHH
Q 020765 94 SLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISN 173 (321)
Q Consensus 94 t~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~~~~~KTa~l~~~ 173 (321)
|+|++||++.|||+||||+++||+.+++.+ +++++.+++++..++.||.+|+.+..+..+++++|++|+++|||+||++
T Consensus 91 t~h~~~G~~~AIl~GD~L~~~a~~~l~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~~~~~~~~~~~y~~~i~~KTa~L~~~ 169 (315)
T 3tc1_A 91 SINALFGNFNAVMLGDVFYSKAFFELSKMG-ELIAQALSNAVLRLSRGEIEDVFVGECFNSDKQKYWRILEDKTAHFIEA 169 (315)
T ss_dssp ------CCSHHHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHTHHHHHH
T ss_pred cHHHHhCchHHHHHHHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhcchHHHHHH
Confidence 999999999999999999999999999886 8899999999999999999999988777899999999999999999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHHHHhh-ChHHHHHHHc
Q 020765 174 SCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEE-FPQLRTVVEQ 252 (321)
Q Consensus 174 ~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~-~~~~~~~l~~ 252 (321)
||++|++++|.+ .+.++.||.++|+||||+||++|++++++.+|||+|+||++||+|||++++++. +++.++.+.+
T Consensus 170 ~~~~ga~lag~~---~~~l~~~g~~lG~aFQI~DD~ld~~~d~~~~GK~~g~Dl~egK~T~p~i~al~~~~~~~~~~L~~ 246 (315)
T 3tc1_A 170 SLKSMAILLNKD---AKIYADFGLNFGMAFQIIDDLLDITQDAKTLGKPNFSDFKEGKTTLPYLLLYEKLNQHDQGLLIS 246 (315)
T ss_dssp HHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCTGGGTCCCHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHHHHhcccCCHHHhCCChhhHHHcCChhHHHHHHHHhCCHHHHHHHHH
Confidence 999999999998 578999999999999999999999999999999999999999999999999998 4555554443
Q ss_pred ccC--ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHH
Q 020765 253 GFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVI 317 (321)
Q Consensus 253 ~~~--~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~~~~~ 317 (321)
.+. ++++++++++++.++|+++++++++++|.++|.+.|+.+|+++ +|+.|..|++++.
T Consensus 247 ~l~~~~~~~~~~i~~li~~~ga~~~~~~~~~~~~~~A~~~L~~lp~s~------~r~~L~~l~~~~~ 307 (315)
T 3tc1_A 247 YFKQDSHEIIEWTKEKFKQYGIIEETLKTAQVYSKKALEAIKGENNLI------LEKLAQDVISRTF 307 (315)
T ss_dssp TTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTTCCHH------HHHHHHHHHCC--
T ss_pred HHcCCCHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHH
Confidence 332 6789999999999999999999999999999999999999988 9999999998765
No 16
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=100.00 E-value=1.2e-67 Score=486.93 Aligned_cols=260 Identities=25% Similarity=0.391 Sum_probs=243.3
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCC
Q 020765 11 SAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDADTRR 90 (321)
Q Consensus 11 ~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI~D~s~~RR 90 (321)
++++|++..| |||+||.|++++++++|++.+ +.+..+|+++||+|+||||||||||+|++||
T Consensus 30 ~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~~----------------~~~~~~A~avEliH~asLiHDDi~D~s~~RR 91 (299)
T 1v4e_A 30 EQIMKDLPLY--GKMLRVRLSILSFKNRGVEIG----------------EDAISSLAALELVHLASLLHDDVIDGARFRR 91 (299)
T ss_dssp HHHHTTSCCC--CCCHHHHHHHHHHHHHTCCCC----------------HHHHHHHHHHHHHHHHHHHHHHHHHTCSEET
T ss_pred HHHHHHHhCC--CCcHHHHHHHHHHHHcCCCCh----------------hHHHHHHHHHHHHHHHHHhhCCCCCCCCCCC
Confidence 8899999989 999999999999999976211 2468899999999999999999999999999
Q ss_pred CcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHHHHhhhhHHH
Q 020765 91 GIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASL 170 (321)
Q Consensus 91 G~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~~~~~KTa~l 170 (321)
|+||+|.+||++.|||+||||+++||+.+++..+.++++.+++++..++.||.+|+.+..+. +++++|++|+++|||+|
T Consensus 92 G~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~~~~~~-~~~~~y~~~i~~KTa~L 170 (299)
T 1v4e_A 92 GKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLRRAFLNVIGKMSEAELIEQLSRYKP-ITKEEYLRIVEGKSGAL 170 (299)
T ss_dssp TEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHTHHH
T ss_pred CCCchhhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhHHHHHHccCCC-CCHHHHHHHHHhccHHH
Confidence 99999999999999999999999999999988888999999999999999999999988766 89999999999999999
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHHHHhhChHHHHHH
Q 020765 171 ISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVV 250 (321)
Q Consensus 171 ~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~~~~~~~~l 250 (321)
|++||++|++++|.++ +.++.||.++|+||||+||++|++++ +.+|||.|+||++||+|||++++++..+.+++++
T Consensus 171 ~~~~~~~ga~lag~~~---~~l~~~g~~lG~aFQi~DD~lD~~~d-~~~GK~~g~Dl~egK~T~p~l~al~~~~~l~~~l 246 (299)
T 1v4e_A 171 FGLALQLPALLEGELG---EDLYNLGVTIGTIYQMFDDIMDFAGM-EKIGKDGFLDLKNGVASFPLVTAMEKFPEARQMF 246 (299)
T ss_dssp HHHHHHHHHHHHTCCC---HHHHHHHHHHHHHHHHHHHHHHHTTC-CSCCTTSSCCCTTTTCCHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHccCc-cccCCCcchHhhCCCchHHHHHHHHhChHHHHHH
Confidence 9999999999999877 78999999999999999999999999 9999999999999999999999999876677777
Q ss_pred HcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 020765 251 EQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 298 (321)
Q Consensus 251 ~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~ 298 (321)
.+ ++++++++++.++|+++++++.+++|.++|.+.|+.+|+..
T Consensus 247 ~~-----~~~~~~~~~l~~~g~~~~~~~~~~~~~~~A~~~L~~l~~~~ 289 (299)
T 1v4e_A 247 EN-----RDWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLRDFV 289 (299)
T ss_dssp HT-----TCHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCGGGCCC-
T ss_pred hH-----HHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 54 57889999999999999999999999999999999999876
No 17
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=100.00 E-value=1.1e-66 Score=494.27 Aligned_cols=296 Identities=18% Similarity=0.198 Sum_probs=262.5
Q ss_pred chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 020765 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDD 85 (321)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI~D~ 85 (321)
++.+.++++|.+ .| |||+||+||+++++++|++.+. .++..+.+..+|++|||||+||||||||||+
T Consensus 63 ~~~l~~~~~y~~-~g--GKrlRp~l~l~~~~~~~~~~~~----------~~~~~~~a~~~A~avEliH~asLIHDDImD~ 129 (374)
T 2qis_A 63 IARLKEVLEYNA-IG--GKYNRGLTVVVAFRELVEPRKQ----------DADSLQRAWTVGWCVELLQAFFLVADDIMDS 129 (374)
T ss_dssp HHHHHHHHHHHS-SS--SCCHHHHHHHHHHHHHSCGGGC----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhc-CC--CcchHHHHHHHHHHHhCCCCcc----------chHHHHHHHHHHHHHHHHHHHHHHHccccCC
Confidence 457899999988 48 9999999999999999863110 0122345788999999999999999999999
Q ss_pred CCCCCCcCchhhhcChh-HHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHhhhHhhhcccCCC-----CC
Q 020765 86 ADTRRGIGSLNFVMGNK-LAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSDQ-----RC 154 (321)
Q Consensus 86 s~~RRG~pt~~~~~G~~-~Ail~Gd~l~~~a~~~l~~~-----~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~-----~~ 154 (321)
|++|||+||+|++||++ +||++||++++.+|..+++. ...++++.+++++..++.||.+|+.+.... .+
T Consensus 130 s~~RRG~pt~h~~~G~~~~Ai~~g~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~ 209 (374)
T 2qis_A 130 SLTRRGQICWYQKPGVGLDAINDANLLEACIYRLLKLYCREQPYYLNLIELFLQSSYQTEIGQTLDLLTAPQGNVDLVRF 209 (374)
T ss_dssp CCEETTEECGGGSTTTGGGHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCGGGC
T ss_pred CCCCCCCccHHHhcCchHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccC
Confidence 99999999999999999 99999999999999988753 246799999999999999999999886541 37
Q ss_pred CHHHHHHHHhhhhHHH-HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccC
Q 020765 155 SMDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII 232 (321)
Q Consensus 155 s~~~y~~~~~~KTa~l-~~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~ 232 (321)
++++|++|+.+|||+| |++||++|++++| ++++..+.++.||.++|+||||+||++|++++++.+|| +|+||++||+
T Consensus 210 t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag~a~~~~~~~l~~~g~~lG~aFQI~DDiLD~~gd~~~~GK-~g~Dl~~gK~ 288 (374)
T 2qis_A 210 TEKRYKSIVKYKSAFYSFYLPIAAAMYMAGIDGEKEHANAKKILLEMGEFFQIQDDYLDLFGDPSVTGK-IGTDIQDNKC 288 (374)
T ss_dssp CHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHCS-CCCTTTTTCC
T ss_pred CHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCChhhcCC-chhHHHcCCc
Confidence 9999999999999999 9999999999999 99999999999999999999999999999999999999 9999999999
Q ss_pred cHHHHHHHhhC-hHHHHHHHcccC--ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHH
Q 020765 233 TAPILFAMEEF-PQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRAL 309 (321)
Q Consensus 233 Tlp~l~al~~~-~~~~~~l~~~~~--~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L 309 (321)
|||++++++.. ++.++.+.+.+. ++++++++++++.++|+.+++++++++|.++|.+.|+.+|.++ .++.|
T Consensus 289 T~p~l~al~~a~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~a~~~L~~lp~~~------~k~~L 362 (374)
T 2qis_A 289 SWLVVQCLQRATPEQYQILKENYGQKEAEKVARVKALYEELDLPAVFLQYEEDSYSHIMALIEQYAAPL------PPAVF 362 (374)
T ss_dssp CHHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCTTS------CHHHH
T ss_pred cHHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHH
Confidence 99999999985 456666665543 3678999999999999999999999999999999999999988 78999
Q ss_pred HHHHHHHHhccC
Q 020765 310 LDLTHRVITRNK 321 (321)
Q Consensus 310 ~~l~~~~~~R~~ 321 (321)
..|++++++|+|
T Consensus 363 ~~l~~~i~~R~k 374 (374)
T 2qis_A 363 LGLARKIYKRRK 374 (374)
T ss_dssp HHHHHHHC----
T ss_pred HHHHHHHHcCcC
Confidence 999999999986
No 18
>1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A*
Probab=100.00 E-value=1.9e-66 Score=492.02 Aligned_cols=299 Identities=16% Similarity=0.140 Sum_probs=262.5
Q ss_pred hhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 020765 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 86 (321)
Q Consensus 7 ~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI~D~s 86 (321)
+.+.++++|.+. | |||+||.|++++++++|+..+.. ....+...+.+..+|+++||||+||||||||||+|
T Consensus 34 ~~l~~~~~y~~~-g--GKrlRp~l~l~~~~~~~~~~~~~------~~~~~~~~~~a~~~a~avEliH~asLiHDDI~D~s 104 (362)
T 1yhl_A 34 RYLRIMMDTTCL-G--GKYFRGMTVVNVAEGFLAVTQHD------EATKERILHDACVGGWMIEFLQAHYLVEDDIMDGS 104 (362)
T ss_dssp HHHHHHHHHHHS-S--SCCHHHHHHHHHHHHHHTTSCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhcC-C--cccHHHHHHHHHHHHhCCCcCCC------hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 468889999884 8 99999999999999997632100 00001123334458999999999999999999999
Q ss_pred CCCCCcCchhhhcCh--hHHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHhhhHhhhccc----------
Q 020765 87 DTRRGIGSLNFVMGN--KLAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTS---------- 149 (321)
Q Consensus 87 ~~RRG~pt~~~~~G~--~~Ail~Gd~l~~~a~~~l~~~-----~~~~~~~~~~~~~~~~~~Gq~~d~~~~---------- 149 (321)
++|||+||+|++||+ +.|||+||||++.++..+++. ...++++.+++++..++.||++|+.+.
T Consensus 105 ~~RRG~pt~h~~~g~~~~~Ail~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~ldl~~~~~~~~~~~~~ 184 (362)
T 1yhl_A 105 VMRRGKPCWYRFPGVTTQCAINDGIILKSWTQIMAWHYFADRPFLKDLLCLFQKVDYATAVGQMYDVTSMCDSNKLDPEV 184 (362)
T ss_dssp CEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTBCGGGCCTTS
T ss_pred CCCCCCccHHhccCccHhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Confidence 999999999999999 589999999999999999874 346899999999999999999999887
Q ss_pred -C--CC---CCCHHHHHHHHhhhhHHH-HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCC
Q 020765 150 -S--DQ---RCSMDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGK 221 (321)
Q Consensus 150 -~--~~---~~s~~~y~~~~~~KTa~l-~~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK 221 (321)
. +. .+++++|++|+++|||+| |++||++|++++| .+++..+.++.||.++|+||||+||++|++++++.+||
T Consensus 185 ~~~~~~~~~~~~~~~y~~~~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK 264 (362)
T 1yhl_A 185 AQPMTTDFAEFTPAIYKRIVKYKTTFYTYLLPLVMGLFVSEAAASVEMNLVERVAHLIGEYFQVQDDVMDCFTPPEQLGK 264 (362)
T ss_dssp CCCBCSSCTTCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSS
T ss_pred ccccccccccCCHHHHHHHHHhcCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCC
Confidence 3 22 479999999999999999 9999999999999 88888899999999999999999999999999999999
Q ss_pred cchhHhhhccCcHHHHHHHhhC-hHHHHHHHcccC--ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCC
Q 020765 222 GSLSDIRHGIITAPILFAMEEF-PQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENN 298 (321)
Q Consensus 222 ~~~~Dl~egk~Tlp~l~al~~~-~~~~~~l~~~~~--~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~ 298 (321)
.|+||++||+|||++++++.. ++.++.+.+.+. ++++++++++++.++|+++++++++++|.++|.+.|+.+|.++
T Consensus 265 -~g~Dl~egK~T~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~ 343 (362)
T 1yhl_A 265 -VGTDIEDAKCSWLAVTFLGKANAAQVAEFKANYGDKDPAKVAVVKRLYSEANLQADFAAYEAEVVREVESLIEQLKVKS 343 (362)
T ss_dssp -CCCTTTTTCCCHHHHHHHTTCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred -ChhhHhcCCchHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999985 455555554442 4678999999999999999999999999999999999999998
Q ss_pred CcchHHHH--HHHHHHHHHHHhccC
Q 020765 299 DEDVTKSR--RALLDLTHRVITRNK 321 (321)
Q Consensus 299 ~~~~~~~~--~~L~~l~~~~~~R~~ 321 (321)
.+ +.|..|++++++|+|
T Consensus 344 ------~~~~~~L~~l~~~i~~R~~ 362 (362)
T 1yhl_A 344 ------PTFAESVAVVWEKTHKRKK 362 (362)
T ss_dssp ------HHHHHHHHHHHHHHHTCCC
T ss_pred ------hhHHHHHHHHHHHHHhccC
Confidence 78 999999999999986
No 19
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=100.00 E-value=3.2e-66 Score=489.97 Aligned_cols=295 Identities=20% Similarity=0.198 Sum_probs=265.1
Q ss_pred hhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 020765 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 86 (321)
Q Consensus 7 ~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI~D~s 86 (321)
+.+.++++|.+. | |||+||++|+++++++|++.+. ..+..+.+..+|+++||||+||||||||||+|
T Consensus 57 ~~l~~~~~y~~~-g--GKrlRp~l~l~~~~~~~~~~~~----------~~~~~~~~~~~A~aiEliH~asLiHDDImD~s 123 (367)
T 1uby_A 57 ARLKEVLQYNAP-G--GKCNRGLTVVAAYRELSGPGQK----------DAESLRCALAVGWCIELFQAASLVADDIMDQS 123 (367)
T ss_dssp HHHHHHHHHHSS-S--SCCHHHHHHHHHHHHHCCGGGC----------SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhhcC-C--CcchhHHHHHHHHHHhCCCccC----------ChhhHHHHHHHHHHHHHHHHHHHHhCcccCCC
Confidence 578999999984 9 9999999999999999762110 01223457899999999999999999999999
Q ss_pred CCCCCcCchhhhcChh-HHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHhhhHhhhcccCCC-----CCC
Q 020765 87 DTRRGIGSLNFVMGNK-LAVLAGDFLLSRACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSDQ-----RCS 155 (321)
Q Consensus 87 ~~RRG~pt~~~~~G~~-~Ail~Gd~l~~~a~~~l~~~-----~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~-----~~s 155 (321)
++|||+||+|++||++ .+|+.||++++.+|..+++. ...++++.+++++..++.||.+|+.+.... .++
T Consensus 124 ~~RRG~pt~h~~~g~~~~ai~dg~~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~d~~~~t 203 (367)
T 1uby_A 124 LTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAYQTELGQMLDLITAPVSKVDLSHFS 203 (367)
T ss_dssp CEETTEECGGGSTTTTTHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSCCCTTCC
T ss_pred CCCCCCCChhhccCcHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCC
Confidence 9999999999999999 99999999999999988764 246899999999999999999999886532 579
Q ss_pred HHHHHHHHhhhhHHH-HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCc
Q 020765 156 MDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 233 (321)
Q Consensus 156 ~~~y~~~~~~KTa~l-~~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~T 233 (321)
+++|++|+++|||+| |++||++|++++| ++++..+.++.||.++|+||||+||++|++++++.+|| .|+||++||+|
T Consensus 204 ~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~gd~~~~GK-~g~Dl~egK~T 282 (367)
T 1uby_A 204 EERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEHENAKAILLEMGEYFQIQDDYLDCFGDPALTGA-VGTDIQDNKCS 282 (367)
T ss_dssp HHHHHHHHHHHTHHHHTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSC-CCCCSSSCCCC
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhcCC-chhhHHcCCch
Confidence 999999999999999 9999999999999 89999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHHhh-ChHHHHHHHcccC--ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHH
Q 020765 234 APILFAMEE-FPQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALL 310 (321)
Q Consensus 234 lp~l~al~~-~~~~~~~l~~~~~--~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~ 310 (321)
||++++++. +++.++.+.+.+. ++++++++++++.++|+.+++++++++|.++|.+.|+.+|+++ .++.|.
T Consensus 283 ~p~l~al~~~~~~~~~~l~~~~~~~~~~~~~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~------~k~~L~ 356 (367)
T 1uby_A 283 WLVVQCLQRVTPEQRQLLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNRL------PKEIFL 356 (367)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHCSSS------CTHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHH
Confidence 999999998 4566677765543 3678999999999999999999999999999999999999887 789999
Q ss_pred HHHHHHHhccC
Q 020765 311 DLTHRVITRNK 321 (321)
Q Consensus 311 ~l~~~~~~R~~ 321 (321)
.|++++++|+|
T Consensus 357 ~l~~~i~~R~~ 367 (367)
T 1uby_A 357 GLAQKIYKRQK 367 (367)
T ss_dssp HHHHHHCCCCC
T ss_pred HHHHHHHhCcC
Confidence 99999999986
No 20
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=100.00 E-value=6.8e-66 Score=475.64 Aligned_cols=258 Identities=28% Similarity=0.363 Sum_probs=225.6
Q ss_pred CchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--
Q 020765 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV-- 82 (321)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI-- 82 (321)
.++.+.++++|++..| |||+||.|++++++++|++. +.+..+|+++||||+||||||||
T Consensus 26 ~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~avEliH~asLiHDDiP~ 86 (301)
T 1rtr_A 26 MDTQLEESMLYSLNAG--GKRIRPVLLLLTLDSLNTEY-----------------ELGMKSAIALEMIHTYSLIHDDLPA 86 (301)
T ss_dssp SCCSHHHHHHHHHTSC--CCCHHHHHHHHHHHHTTSCG-----------------GGGHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHhCCchh
Confidence 4678999999999989 99999999999999998631 23578999999999999999999
Q ss_pred cCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcC------CCHHHHHHHHHHH--HHHHhhhHhhhcccCCCCC
Q 020765 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL------KNTEVVTLLATVV--EHLVTGETMQMTTSSDQRC 154 (321)
Q Consensus 83 ~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~------~~~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~~~ 154 (321)
||+|++|||+||+|++||++.|||+||+|+++||+.+++. ...++++.+++++ ..++.||.+|+.+..+ .+
T Consensus 87 ~D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~ls~~~g~~~~~~GQ~~Dl~~~~~-~~ 165 (301)
T 1rtr_A 87 MDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDRLTDEVKIKVLQRLSIASGHVGMVGGQMLDMQSEGQ-PI 165 (301)
T ss_dssp TTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS-CC
T ss_pred ccCCCccCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhHhHHHHHHHHHHHccCC-CC
Confidence 9999999999999999999999999999999999999986 2346788888888 8899999999998766 78
Q ss_pred CHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcH
Q 020765 155 SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITA 234 (321)
Q Consensus 155 s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tl 234 (321)
++++|++|+++|||+||++||++|++++|++++..+.++.||.++|+||||+||++|++++++.+||++|+|+++||+||
T Consensus 166 ~~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~ 245 (301)
T 1rtr_A 166 DLETLEMIHKTKTGALLTFAVMSAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTY 245 (301)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCH
T ss_pred CHHHHHHHHHhchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHH
Q 020765 235 PILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTH 314 (321)
Q Consensus 235 p~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~~ 314 (321)
|++++ ++++++.+++|.++|.+.|+.+|+++ .++.|.+|++
T Consensus 246 p~l~a---------------------------------l~~a~~~a~~~~~~A~~~L~~l~~~~------~~~~L~~l~~ 286 (301)
T 1rtr_A 246 VSLLG---------------------------------KDGAEDKLTYHRDAAVDELTQIDEQF------NTKHLLEIVD 286 (301)
T ss_dssp HHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHTSCTTS------CCHHHHHHHH
T ss_pred HHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhCCCch------HHHHHHHHHH
Confidence 99994 56889999999999999999999776 6789999999
Q ss_pred HHHhccC
Q 020765 315 RVITRNK 321 (321)
Q Consensus 315 ~~~~R~~ 321 (321)
++++|++
T Consensus 287 ~i~~R~~ 293 (301)
T 1rtr_A 287 LFYSRDH 293 (301)
T ss_dssp HHHCC--
T ss_pred HHHHhhc
Confidence 9999974
No 21
>2ihi_A Pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase; 2.00A {Plasmodium vivax sai-1} PDB: 3mav_A 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=2.1e-65 Score=487.32 Aligned_cols=293 Identities=18% Similarity=0.187 Sum_probs=244.2
Q ss_pred hhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 020765 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 86 (321)
Q Consensus 7 ~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI~D~s 86 (321)
+.+.++++|.+ .| |||+||+||+++++++|++... ++..+.+..+||||||||+||||||||||+|
T Consensus 66 ~~~~~~~~Y~~-~G--GKrlRp~Lvl~~~~~~g~~~~~-----------~~~~~~a~~lA~aiEliH~asLIHDDImD~s 131 (395)
T 2ihi_A 66 KYYKLLFDYNC-LG--GKNNRGILVILIYEYVKNRDIN-----------SSEWEKAACLAWCIEILQAAFLVADDIMDKG 131 (395)
T ss_dssp HHHHHHHHHHH-SS--SCCHHHHHHHHHHHHHC---CC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhc-cC--cccHHHHHHHHHHHHhCCCCCC-----------hhHHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 46778999998 69 9999999999999999863211 1334568899999999999999999999999
Q ss_pred CCCCCcCchhhhcChhH--HHHHHHHHHHHHHHHHHcC--C---CHHHHHHHHHHHHHHHhhhHhhhc-c----------
Q 020765 87 DTRRGIGSLNFVMGNKL--AVLAGDFLLSRACVALASL--K---NTEVVTLLATVVEHLVTGETMQMT-T---------- 148 (321)
Q Consensus 87 ~~RRG~pt~~~~~G~~~--Ail~Gd~l~~~a~~~l~~~--~---~~~~~~~~~~~~~~~~~Gq~~d~~-~---------- 148 (321)
++|||+||||++||++. |||+||+|++.++..+++. + ..++++.+++++..++.||.+|+. |
T Consensus 132 ~~RRG~pt~h~~~g~~~~~AI~~gd~L~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~ 211 (395)
T 2ihi_A 132 EMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHRE 211 (395)
T ss_dssp SEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHCSSSC
T ss_pred CCCCCCCCccccCCccHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHhHHHHHHhhhhcccccccc
Confidence 99999999999999998 9999999999999988763 1 257899999999999999999992 2
Q ss_pred -------c---CC---CCCCHHHHHHHHhhhhHHH-HHHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHHhchhhhhhhc
Q 020765 149 -------S---SD---QRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQTAEV--AILAFDYGKNLGLAYQLIDDVLDF 212 (321)
Q Consensus 149 -------~---~~---~~~s~~~y~~~~~~KTa~l-~~~~~~~ga~lag~~~~~--~~~l~~~g~~lG~afQi~DD~ld~ 212 (321)
. .. ..+++++|++|+.+|||+| |.+||++|++++|.+++. .+.++.||.++|+||||+||++|+
T Consensus 212 ~~~~~~~~~~e~~~dl~~~t~~~y~~i~~~KTa~Ls~~~~~~~ga~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~ 291 (395)
T 2ihi_A 212 IDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDI 291 (395)
T ss_dssp CCTTCCCCC-CCCCCGGGCSHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccccccccccccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 1 11 1579999999999999999 999999999999998887 889999999999999999999999
Q ss_pred cCCccccCCcchhHhhhccCcHHHHHHHhh-ChHHHHHHHcccC--ChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Q 020765 213 TGTSASLGKGSLSDIRHGIITAPILFAMEE-FPQLRTVVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAA 289 (321)
Q Consensus 213 ~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~-~~~~~~~l~~~~~--~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~ 289 (321)
+++++.+|| +|+||++||+|||++++++. +++.++.+.+.+. ++++++++++++.++|++++++++++++.++|.+
T Consensus 292 ~gd~~~~GK-~g~Dl~egK~T~p~l~al~~~~~~~~~~L~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~A~~ 370 (395)
T 2ihi_A 292 FGDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILS 370 (395)
T ss_dssp CC----------CTTTTTCCCHHHHHHHHHCCHHHHHHHHHHCC-CCHHHHHHHHHC----CHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHhCC-CcchhhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHH
Confidence 999999999 99999999999999999998 4666666655443 5678999999999999999999999999999999
Q ss_pred HhccCCCCCCcchHHHHHHHHHHHHHHHhcc
Q 020765 290 AIDSLPENNDEDVTKSRRALLDLTHRVITRN 320 (321)
Q Consensus 290 ~l~~l~~~~~~~~~~~~~~L~~l~~~~~~R~ 320 (321)
.|+.+|+++ .|+.|..|++++++|.
T Consensus 371 ~L~~lp~~~------~r~~L~~l~~~i~~R~ 395 (395)
T 2ihi_A 371 AINELHHEG------IEYVLKYLLEILFTGV 395 (395)
T ss_dssp HHTTSCCHH------HHHHHHHHHHC-----
T ss_pred HHHhCCCch------HHHHHHHHHHHHhccC
Confidence 999999987 9999999999999984
No 22
>3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A*
Probab=100.00 E-value=1.2e-65 Score=489.10 Aligned_cols=306 Identities=16% Similarity=0.141 Sum_probs=257.0
Q ss_pred hhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCc-hhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 020765 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGV-EDALATELRTRQQCIAEITEMIHVASLLHDDVLDD 85 (321)
Q Consensus 7 ~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~lA~~vEllh~asLihDDI~D~ 85 (321)
+.|.++++|.+ .| |||+||+||+++++++|+..+.. ++.. .....+.....+..++|||||||+||||||||||+
T Consensus 56 ~~l~~~m~Y~~-~G--GKr~Rp~l~l~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~A~~~g~avEliH~asLIHDDImD~ 131 (390)
T 3dyh_A 56 RYLRKMMDTTC-LG--GKYNRGLTVIDVAESLLSLSPNN-NGEEDDGARRKRVLHDACVCGWMIEFLQAHYLVEDDIMDN 131 (390)
T ss_dssp HHHHHHHHHHH-SS--SCCHHHHHHHHHHHHTSCC----------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhc-CC--ccchhHHHHHHHHHHhCCccccc-cccccccCCHHHHHHHHHhhhhHHHHHHHHHHHHcCCcCC
Confidence 46899999999 79 99999999999999987510000 0000 00001112222333445899999999999999999
Q ss_pred CCCCCCcCchhhhcChhHHHHHHHHHHHHH--HHHHHcC-C-C---HHHHHHHHHHHHHHHhhhHhhhcccC--------
Q 020765 86 ADTRRGIGSLNFVMGNKLAVLAGDFLLSRA--CVALASL-K-N---TEVVTLLATVVEHLVTGETMQMTTSS-------- 150 (321)
Q Consensus 86 s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a--~~~l~~~-~-~---~~~~~~~~~~~~~~~~Gq~~d~~~~~-------- 150 (321)
|++|||+||+|+.||++.||++||+++..+ |+.+++. . . .++++.+++++..++.||.+|+.+.+
T Consensus 132 s~~RRG~Pt~h~~~G~~~ail~gD~ll~~a~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~e~~~~d~~ 211 (390)
T 3dyh_A 132 SVTRRGKPCWYRHPDVTVQCAINDGLLLKSWTHMMAMHFFADRPFLQDLLCRFNRVDYTTAVGQLYDVTSMFDSNKLDPD 211 (390)
T ss_dssp CCEETTEECGGGSTTCCHHHHHHHHHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHHHHHHHTTTSCGGGCCTT
T ss_pred CCCcCCCccccccCChHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Confidence 999999999999999999999999999755 5677652 1 1 37899999999999999999998721
Q ss_pred --C------CCCCHHHHHHHHhhhhHHH-HHHHHHHHHHHhCCCHHH-HHHHHHHHHHHHHHhchhhhhhhccCCccccC
Q 020765 151 --D------QRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQTAEV-AILAFDYGKNLGLAYQLIDDVLDFTGTSASLG 220 (321)
Q Consensus 151 --~------~~~s~~~y~~~~~~KTa~l-~~~~~~~ga~lag~~~~~-~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~G 220 (321)
. ..+++++|++|+++|||+| |++||++|++++|.+++. .+.++.||.++|+||||+||++|++++++.+|
T Consensus 212 ~~~~~~~~~~~~t~~~y~~i~~~KTa~L~~~~~~~~ga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~G 291 (390)
T 3dyh_A 212 VSQPTTTDFAEFTLSNYKRIVKYKTAYYTYLLPLVMGLIVSEALPTVDMGVTEELAMLMGEYFQVQDDVMDCFTPPERLG 291 (390)
T ss_dssp SCCCCCSSCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHS
T ss_pred cccccccccCCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHhC
Confidence 1 2579999999999999999 999999999999998774 78899999999999999999999999999999
Q ss_pred CcchhHhhhccCcHHHHHHHhh-ChHHHHHHHccc--CChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCC
Q 020765 221 KGSLSDIRHGIITAPILFAMEE-FPQLRTVVEQGF--EDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPEN 297 (321)
Q Consensus 221 K~~~~Dl~egk~Tlp~l~al~~-~~~~~~~l~~~~--~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~ 297 (321)
| +|+||++||+|||++++++. +++.++.|.+.+ .+++++++++++++++|++++++++++++.++|.+.|+.+|.+
T Consensus 292 K-~g~Dl~egK~T~pvi~al~~~~~~~r~~L~~~~~~~~~~~v~~v~~l~~~~g~~~~~~~~~~~~~~~a~~~i~~l~~~ 370 (390)
T 3dyh_A 292 K-VGTDIQDAKCSWLAVTFLAKASSAQVAEFKANYGSGDSEKVATVRRLYEEADLQGDYVAYEAAVAEQVKELIEKLRLC 370 (390)
T ss_dssp S-CCCTTTTTCCCHHHHHHHHHCCHHHHHHHHTTTTCCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CcchhhcCCccHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9 99999999999999999998 567777776655 3678899999999999999999999999999999999999998
Q ss_pred CCcchHHHHHHHHHHHHHHHhccC
Q 020765 298 NDEDVTKSRRALLDLTHRVITRNK 321 (321)
Q Consensus 298 ~~~~~~~~~~~L~~l~~~~~~R~~ 321 (321)
+. ..++.|..|++++++|+|
T Consensus 371 ~~----~~~~~l~~l~~~i~~R~k 390 (390)
T 3dyh_A 371 SP----GFAASVETLWGKTYKRQK 390 (390)
T ss_dssp CH----HHHHHHHHHHHTTTTCCC
T ss_pred ch----HHHHHHHHHHHHHHcCCC
Confidence 71 028899999999999987
No 23
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=100.00 E-value=2.4e-65 Score=474.43 Aligned_cols=256 Identities=28% Similarity=0.397 Sum_probs=221.1
Q ss_pred chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--c
Q 020765 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV--L 83 (321)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI--~ 83 (321)
++.|.++++|.+..| |||+||.|++++++++|++. +.+..+|++|||||+|||||||| |
T Consensus 59 ~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~aiEliH~aSLIHDDIP~m 119 (324)
T 3uca_A 59 NKVLYDSMAYSINVG--GKRIRPILMLLSYYIYKSDY-----------------KKILTPAMAIEMIHTYSLIHDDLPCM 119 (324)
T ss_dssp CHHHHHHHHHHHHHC--CCCHHHHHHHHHHHTTCSCG-----------------GGGHHHHHHHHHHHHHHHHHHTSTTT
T ss_pred cHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHCCchhc
Confidence 789999999999989 99999999999999998642 23678999999999999999999 9
Q ss_pred CCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCC---C---HHHHHHHHHHH--HHHHhhhHhhhcccCCCCCC
Q 020765 84 DDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK---N---TEVVTLLATVV--EHLVTGETMQMTTSSDQRCS 155 (321)
Q Consensus 84 D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~---~---~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~~~s 155 (321)
|+|++|||+||+|++||+++|||+||+|+++||+.+++.. . .++++.++++. ..++.||.+|+.+..+..++
T Consensus 120 D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~~~t 199 (324)
T 3uca_A 120 DNDDLRRGKPTNHKVFGEAIAVLAGDALLNEAMKILVDYSLEEGKSALKATKIIADAAGSDGMIGGQIVDIINEDKEEIS 199 (324)
T ss_dssp TCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSTTTHHHHHHHHHHTSSCSSCC
T ss_pred cCCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHhHhHHHHhHHHHHHcCCCCCCC
Confidence 9999999999999999999999999999999999988742 1 45777888875 67999999999998776789
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHH
Q 020765 156 MDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAP 235 (321)
Q Consensus 156 ~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp 235 (321)
+++|++|+++|||+||++||++|++++|++++..+.++.||.++|+||||+||++|++++++.+|||+|+|+++||+|||
T Consensus 200 ~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p 279 (324)
T 3uca_A 200 LKELDYMHLKKTGELIKASIMSGAVLAEASEGDIKKLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYI 279 (324)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CHH
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHH
Q 020765 236 ILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHR 315 (321)
Q Consensus 236 ~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~~~ 315 (321)
+++ +++++++.++++.++|.+.|+.||.+. +.|..|+++
T Consensus 280 ~l~---------------------------------al~~a~~~a~~~~~~A~~~L~~l~~~~--------~~L~~la~~ 318 (324)
T 3uca_A 280 TIF---------------------------------GLEECKKKCVNITEECIEILSSIKGNT--------EPLKVLTMK 318 (324)
T ss_dssp HHH---------------------------------CHHHHHHHHHHHHHHHHHHHHTSSSCC--------HHHHHHHHH
T ss_pred HHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhCCCcH--------HHHHHHHHH
Confidence 999 567899999999999999999999755 789999999
Q ss_pred HHhccC
Q 020765 316 VITRNK 321 (321)
Q Consensus 316 ~~~R~~ 321 (321)
+++|++
T Consensus 319 i~~R~~ 324 (324)
T 3uca_A 319 LLERKF 324 (324)
T ss_dssp HHHCCC
T ss_pred HHhccC
Confidence 999975
No 24
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=100.00 E-value=3.3e-65 Score=473.50 Aligned_cols=256 Identities=28% Similarity=0.349 Sum_probs=222.9
Q ss_pred CchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--
Q 020765 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV-- 82 (321)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI-- 82 (321)
.++.|.++++|++..| |||+||.|++++++++|++. +.+..+|++|||||++|||||||
T Consensus 34 ~~~~l~~a~~y~~~~g--GKrlRP~L~l~~~~~~g~~~-----------------~~~~~~A~avEliH~aSLIHDDip~ 94 (324)
T 3ts7_A 34 MPERLHQAMRYSVLGG--GKRMRPLLTYATGQTIGVAA-----------------DLLDGPACAVEFIHVYSLIHDDLPA 94 (324)
T ss_dssp SSHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHTCCG-----------------GGTHHHHHHHHHHHHHHHHHHTSTT
T ss_pred CcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHhhcCccc
Confidence 3678999999999989 99999999999999998642 23678999999999999999999
Q ss_pred cCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCC--C------HHHHHHHHHHH--HHHHhhhHhhhcccCCC
Q 020765 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--N------TEVVTLLATVV--EHLVTGETMQMTTSSDQ 152 (321)
Q Consensus 83 ~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~--~------~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~ 152 (321)
||+|++|||+||+|++||+++|||+||+|+++||+.+++.. + .++++.++++. ..++.||.+|+.+..+
T Consensus 95 mD~~~~RRG~pt~h~~~G~~~AIlaGD~L~~~Af~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~- 173 (324)
T 3ts7_A 95 MDDDDLRRGKPTCHKAYDEATAILAGDGLQALAFHVLAQDPSIAVPAENRIAMIETLAKASGPAGMVGGQAIDLASVGK- 173 (324)
T ss_dssp TTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTC-
T ss_pred ccCCCccCCCCchhhhcChHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhhhHHHHhHHHHHHccCC-
Confidence 99999999999999999999999999999999999998864 2 25778888875 6899999999998776
Q ss_pred CCCHHHHHHHHhhhhHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhcc
Q 020765 153 RCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGI 231 (321)
Q Consensus 153 ~~s~~~y~~~~~~KTa~l~~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk 231 (321)
.+++++|++|+++|||+||++||++|++++| .+++..+.++.||.++|+||||+||++|++++++.+|||+|+|+++||
T Consensus 174 ~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK 253 (324)
T 3ts7_A 174 KLDLPGLENMHIRKTGALIRASVRLACLARPGLPAEQFDRLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNK 253 (324)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---------------C
T ss_pred CCCHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCC
Confidence 7899999999999999999999999999999 899999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHH
Q 020765 232 ITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLD 311 (321)
Q Consensus 232 ~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~ 311 (321)
+|||+++ +++++++.++++.++|.+.|+.+|.+. +.|..
T Consensus 254 ~T~p~l~---------------------------------gle~a~~~a~~~~~~A~~~L~~l~~~~--------~~L~~ 292 (324)
T 3ts7_A 254 PNYPALL---------------------------------GLSGAKEKAEEMHEAALESLAGFGPEA--------DLLRE 292 (324)
T ss_dssp CCHHHHH---------------------------------CHHHHHHHHHHHHHHHHHTTTTCCGGG--------HHHHH
T ss_pred ccHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhCCccH--------HHHHH
Confidence 9999999 678999999999999999999998754 78999
Q ss_pred HHHHHHhccC
Q 020765 312 LTHRVITRNK 321 (321)
Q Consensus 312 l~~~~~~R~~ 321 (321)
|++++++|++
T Consensus 293 la~~~~~R~~ 302 (324)
T 3ts7_A 293 LARFIIQRQS 302 (324)
T ss_dssp HHHHHHHTSS
T ss_pred HHHHHHhccC
Confidence 9999999974
No 25
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=100.00 E-value=3.2e-65 Score=470.11 Aligned_cols=257 Identities=32% Similarity=0.401 Sum_probs=220.8
Q ss_pred CchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--
Q 020765 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV-- 82 (321)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI-- 82 (321)
.++.|.++++|++..| |||+||.|++++++++|++.. +.+..+|+++||||+||||||||
T Consensus 34 ~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~----------------~~~~~~A~avEliH~asLIHDDIP~ 95 (302)
T 3p8l_A 34 ENERLKEAMLYSIHAG--GKRLRPLLVLTTVAAFQKEME----------------TQDYQVAASLEMIHTYSLIHDDLPA 95 (302)
T ss_dssp CCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCCCC----------------HHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCcc----------------HHHHHHHHHHHHHHHHHHHHCCchh
Confidence 4678999999999989 999999999999999987432 24788999999999999999999
Q ss_pred cCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCC-----HHHHHHHHHHH--HHHHhhhHhhhcccCCCCCC
Q 020765 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-----TEVVTLLATVV--EHLVTGETMQMTTSSDQRCS 155 (321)
Q Consensus 83 ~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~-----~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~~~s 155 (321)
||+|++|||+||+|++||+++|||+||+|+++||+.+++... .++++.+++++ ..++.||.+|+.+... .++
T Consensus 96 mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~~-~~t 174 (302)
T 3p8l_A 96 MDDDDLRRGKPTNHKVFGEATAILAGDGLLTGAFQLLSLSQLGLSEKVLLMQQLAKAAGNQGMVSGQMGDIEGEKV-SLT 174 (302)
T ss_dssp TTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS-CCC
T ss_pred ccCCCccCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhhhHHHHHHHHHHHccCC-CCC
Confidence 999999999999999999999999999999999999998532 25778888876 6899999999998765 789
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHH
Q 020765 156 MDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAP 235 (321)
Q Consensus 156 ~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp 235 (321)
+++|++|+++|||+||++||++|++++|++++..+.++.||.++|+||||+||++|++++++.+|||+|+|+++||+|||
T Consensus 175 ~~~y~~i~~~KTg~L~~~~~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p 254 (302)
T 3p8l_A 175 LEELAAVHEKKTGALIEFALIAGGVLANQTEEVIGLLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYP 254 (302)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CCHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCC---CCCcchHHHHHHHHHH
Q 020765 236 ILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPE---NNDEDVTKSRRALLDL 312 (321)
Q Consensus 236 ~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~---~~~~~~~~~~~~L~~l 312 (321)
+++ +++.+++.++++.++|.+.|+.||+ ++ .++.|..|
T Consensus 255 ~l~---------------------------------~l~~a~~~~~~~~~~A~~~L~~~~~~~~~~------~~~~L~~l 295 (302)
T 3p8l_A 255 ALL---------------------------------GIAGAKDALTHQLAEGSAVLEKIKANVPNF------SEEHLANL 295 (302)
T ss_dssp HHH---------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHCSSC------CHHHHHHH
T ss_pred HHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhcccccCCh------hHHHHHHH
Confidence 999 6788999999999999999999975 55 57899999
Q ss_pred HHHHHhc
Q 020765 313 THRVITR 319 (321)
Q Consensus 313 ~~~~~~R 319 (321)
++++++|
T Consensus 296 ~~~~~~R 302 (302)
T 3p8l_A 296 LTQLQLR 302 (302)
T ss_dssp HHHTSCC
T ss_pred HHHHhhC
Confidence 9999987
No 26
>3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A*
Probab=100.00 E-value=1e-64 Score=484.80 Aligned_cols=292 Identities=19% Similarity=0.198 Sum_probs=241.6
Q ss_pred hhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 020765 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 86 (321)
Q Consensus 7 ~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI~D~s 86 (321)
|.+..+++|.+. | |||+||+||+++++++|+.... ....+.+..+||||||||+||||||||||+|
T Consensus 66 ~~~~~~~~Y~~~-G--GKRlRP~l~l~~~~~~~~~~~~-----------~~~~~~~~~~A~aiEliH~asLiHDDImD~s 131 (395)
T 3mav_A 66 KYYKLLFDYNCL-G--GKNNRGILVILIYEYVKNRDIN-----------SSEWEKAACLAWCIEILQAAFLVADDIMDKG 131 (395)
T ss_dssp HHHHHHHHHHHS-S--SCCHHHHHHHHHHHHHHC-CCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCCC-C--chhhhHHHHHHHHHHhCCCCCC-----------cccHHHHHHHHHHHHHHHHHHHHHhHHhcCC
Confidence 346667788886 9 9999999999999999864332 2345678999999999999999999999999
Q ss_pred CCCCCcCchhhhcChhHHHHHHHHHHH--HHHHHHHcC-----CCHHHHHHHHHHHHHHHhhhHhhhcccCC--------
Q 020765 87 DTRRGIGSLNFVMGNKLAVLAGDFLLS--RACVALASL-----KNTEVVTLLATVVEHLVTGETMQMTTSSD-------- 151 (321)
Q Consensus 87 ~~RRG~pt~~~~~G~~~Ail~Gd~l~~--~a~~~l~~~-----~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~-------- 151 (321)
++|||+||+|++||+++||++||+|+. .++.++... ...++++.++++...++.||.+|+.+...
T Consensus 132 ~~RRG~pt~h~~~g~~~Ail~GD~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~ 211 (395)
T 3mav_A 132 EMRRNKYCWYLLKDVETKNAVNDVLLLYNSIYKLIEIYLRNESCYVDVIATFRDATLKTIIGQHLDTNIFSDKYSDAHRE 211 (395)
T ss_dssp SEETTEECGGGSTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHCC-CC
T ss_pred CCCCCchhhhhccchHHHHHhhhHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Confidence 999999999999999999999999774 455555431 23578999999999999999999875321
Q ss_pred ----------------CCCCHHHHHHHHhhhhHHH-HHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHhchhhhhhhc
Q 020765 152 ----------------QRCSMDYYMQKTYYKTASL-ISNSCKAIALLAGQT--AEVAILAFDYGKNLGLAYQLIDDVLDF 212 (321)
Q Consensus 152 ----------------~~~s~~~y~~~~~~KTa~l-~~~~~~~ga~lag~~--~~~~~~l~~~g~~lG~afQi~DD~ld~ 212 (321)
..+++++|++|+++|||+| |.+||.+|++++|.+ +...+.++.||.++|+||||+||++|+
T Consensus 212 ~~~~~~~~~e~~~~~~~~~t~~~Y~~ii~~KTa~L~~~~~~~~ga~~ag~~~d~~~~~~l~~~g~~lG~aFQI~DDiLD~ 291 (395)
T 3mav_A 212 IDVNNINVPEQPVIDINMINFGVYKNIVIHKTAYYSFFLPIVCGMLLAGIAVDNLIYKKIEDISMLMGEYFQIHDDYLDI 291 (395)
T ss_dssp CCSSCSSSCCCCCCCGGGCSHHHHHHHHHHHTHHHHTHHHHHHHHHHTTCCTTCTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccchhcccccccCCHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2468999999999999999 899999999999875 346789999999999999999999999
Q ss_pred cCCccccCCcchhHhhhccCcHHHHHHHhh-ChHHHHHHHccc--CChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Q 020765 213 TGTSASLGKGSLSDIRHGIITAPILFAMEE-FPQLRTVVEQGF--EDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAA 289 (321)
Q Consensus 213 ~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~-~~~~~~~l~~~~--~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~ 289 (321)
+++++.+|| +|+||++||+|||+++|+++ +++.+..+.+.+ .+++.++.+.++++++|+.++++++++++.++|.+
T Consensus 292 ~gd~~~~GK-~g~Dl~egK~T~p~i~al~~~~~~~r~~L~~~~~~~d~~~~~~v~~l~~~~g~~~~~~~~~~~~~~~a~~ 370 (395)
T 3mav_A 292 FGDSTKTGK-VGSDIQNNKLTWPLIKTFELCSEPDKIKIVKNYGKNNLACVKVIDSLYEQYKIRKHYESYEKAQKAKILS 370 (395)
T ss_dssp C---------CCCTTTTTCCCHHHHHHHHHSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred cCCHhhhcc-cccHHhcCCchHHHHHHHHhCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHH
Confidence 999999999 69999999999999999997 456666665544 35678899999999999999999999999999999
Q ss_pred HhccCCCCCCcchHHHHHHHHHHHHHHHhc
Q 020765 290 AIDSLPENNDEDVTKSRRALLDLTHRVITR 319 (321)
Q Consensus 290 ~l~~l~~~~~~~~~~~~~~L~~l~~~~~~R 319 (321)
.|+.+|.+. .+..|..+++++++|
T Consensus 371 ~l~~l~~~~------l~~ll~~lle~i~~~ 394 (395)
T 3mav_A 371 AINELHHEG------IEYVLKYLLEILFTG 394 (395)
T ss_dssp HHHTSCCHH------HHHHHHHHHHHC---
T ss_pred HHHhCCcHH------HHHHHHHHHHHHhcC
Confidence 999999776 777788888877765
No 27
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=100.00 E-value=7.7e-65 Score=469.71 Aligned_cols=255 Identities=29% Similarity=0.419 Sum_probs=209.9
Q ss_pred chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--c
Q 020765 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV--L 83 (321)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI--~ 83 (321)
++.|.++++|++..| |||+||.|++++++++|++. +.+..+|++|||||+|||||||| |
T Consensus 30 ~~~l~~a~~y~~~~g--GKrlRp~Lvl~~~~~~g~~~-----------------~~~~~~A~avEliH~aSLIHDDip~m 90 (317)
T 4f62_A 30 ANQLHNAMRYSLFNG--GKRIRPMLTYASAQLVGDIS-----------------SLTDASAAALESIHAYSLIHDDLPAM 90 (317)
T ss_dssp GHHHHHHHHHHHC-C--CCCHHHHHHHHHHHHHSCCC-----------------HHHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred cHHHHHHHHHHHhCC--CcchHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHCCcccc
Confidence 678999999999989 99999999999999998632 34789999999999999999999 9
Q ss_pred CCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCC------HHHHHHHHHHH--HHHHhhhHhhhcccCCCCCC
Q 020765 84 DDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN------TEVVTLLATVV--EHLVTGETMQMTTSSDQRCS 155 (321)
Q Consensus 84 D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~------~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~~~s 155 (321)
|+|++|||+||+|++||+++|||+||+|+++||+.+++..+ .++++.+++++ ..++.||.+|+.+... .++
T Consensus 91 D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~-~~t 169 (317)
T 4f62_A 91 DNDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNPTSAQPELAIKLIQELVVASGRNGMITGQMIDLSSENK-NIS 169 (317)
T ss_dssp CC-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTSSS-CCC
T ss_pred cCCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhhhHHHhHHHHHhccCC-CCC
Confidence 99999999999999999999999999999999999988632 24677777776 4799999999998754 589
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcH
Q 020765 156 MDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITA 234 (321)
Q Consensus 156 ~~~y~~~~~~KTa~l~~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tl 234 (321)
+++|++|+++|||+||++||++|++++| .+++..+.++.||.++|+||||+||++|++++++.+|||+|+|+++||+||
T Consensus 170 ~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~ 249 (317)
T 4f62_A 170 LAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATY 249 (317)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC----------------CCCCH
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcH
Confidence 9999999999999999999999999999 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHH
Q 020765 235 PILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTH 314 (321)
Q Consensus 235 p~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~~ 314 (321)
|+++ +++++++.+++|.++|.+.|+.+|+. ++.|.+|++
T Consensus 250 p~l~---------------------------------gle~a~~~a~~~~~~A~~~L~~l~~~--------~~~L~~l~~ 288 (317)
T 4f62_A 250 PKLL---------------------------------GLDGAKALVVRLHEQAIAQISEFGDK--------SQPLTDLAN 288 (317)
T ss_dssp HHHH---------------------------------HHHHHHHHHHHHHHHHHHHHGGGGGG--------GHHHHHHHH
T ss_pred HHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhCchh--------HHHHHHHHH
Confidence 9999 67899999999999999999999853 478999999
Q ss_pred HHHhccC
Q 020765 315 RVITRNK 321 (321)
Q Consensus 315 ~~~~R~~ 321 (321)
++++|++
T Consensus 289 ~~~~R~~ 295 (317)
T 4f62_A 289 YIIDRNH 295 (317)
T ss_dssp HHHC---
T ss_pred HHHHhcc
Confidence 9999974
No 28
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=100.00 E-value=5e-65 Score=469.51 Aligned_cols=255 Identities=30% Similarity=0.387 Sum_probs=222.0
Q ss_pred chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--c
Q 020765 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV--L 83 (321)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI--~ 83 (321)
++.+.++++|++..| |||+||.|++++++++|++. +.+..+|++|||||++||||||| |
T Consensus 29 ~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~aiEliH~asLIHDDip~m 89 (304)
T 3lsn_A 29 LARLYEAMRYSVMNG--GKRVRPLLAYAACEALGGKP-----------------EQANGAACAVELIHAYSLVHDDLPAM 89 (304)
T ss_dssp GHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHTTCCG-----------------GGGHHHHHHHHHHHHHHHHHHTSTTT
T ss_pred cHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHCCcccc
Confidence 578999999999989 99999999999999998642 23778999999999999999999 9
Q ss_pred CCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCC----C----HHHHHHHHHHHH--HHHhhhHhhhcccCCCC
Q 020765 84 DDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK----N----TEVVTLLATVVE--HLVTGETMQMTTSSDQR 153 (321)
Q Consensus 84 D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~----~----~~~~~~~~~~~~--~~~~Gq~~d~~~~~~~~ 153 (321)
|+|++|||+||+|++||+++|||+||+|+++||+.+++.. + .++++.+++++. .++.||.+|+.+..+ .
T Consensus 90 D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~GQ~lDl~~~~~-~ 168 (304)
T 3lsn_A 90 DDDDLRRGQPTTHKAFDEACAILAGDGLQSLAFSALLDPALSDASAEIRLRMVTTLAQAAGPAGMVGGQAIDLGSVGL-K 168 (304)
T ss_dssp TCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHCTTSCCCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTC-C
T ss_pred cCCCccCCCCchHhhcCHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHchhhHhHhHHHHHHccCC-C
Confidence 9999999999999999999999999999999999999864 2 247778888774 599999999998765 5
Q ss_pred CCHHHHHHHHhhhhHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccC
Q 020765 154 CSMDYYMQKTYYKTASLISNSCKAIALLAGQ-TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII 232 (321)
Q Consensus 154 ~s~~~y~~~~~~KTa~l~~~~~~~ga~lag~-~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~ 232 (321)
+++++|++|+++|||+||++||++|++++|. +++..+.++.||.++|+||||+||++|++++++.+|||+|+|+++||+
T Consensus 169 ~s~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~ 248 (304)
T 3lsn_A 169 LDQQALEYMHRHKTGALIEASVILGALASGRAEKGELKALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKP 248 (304)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------C
T ss_pred CCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCc
Confidence 8999999999999999999999999999999 888899999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHH
Q 020765 233 TAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDL 312 (321)
Q Consensus 233 Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l 312 (321)
|||+++ +++++++.++++.++|.+.|+.||.. ++.|..|
T Consensus 249 T~p~l~---------------------------------~l~~a~~~a~~~~~~A~~~L~~l~~~--------~~~L~~l 287 (304)
T 3lsn_A 249 TYPALL---------------------------------GLAAAKEYALELRDQALHALRPFDAA--------AEPLREL 287 (304)
T ss_dssp CHHHHH---------------------------------CHHHHHHHHHHHHHHHHHHTTTSCGG--------GHHHHHH
T ss_pred cHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhCchh--------HHHHHHH
Confidence 999999 67899999999999999999999863 4789999
Q ss_pred HHHHHhccC
Q 020765 313 THRVITRNK 321 (321)
Q Consensus 313 ~~~~~~R~~ 321 (321)
++++++|++
T Consensus 288 ~~~~~~R~~ 296 (304)
T 3lsn_A 288 ARYIVERRS 296 (304)
T ss_dssp HHHHHC---
T ss_pred HHHHHHhcc
Confidence 999999974
No 29
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=100.00 E-value=4.6e-65 Score=469.74 Aligned_cols=256 Identities=27% Similarity=0.388 Sum_probs=207.5
Q ss_pred CchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--
Q 020765 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV-- 82 (321)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI-- 82 (321)
.++.|.++++|++..| |||+||.|++++++++|++. +.+..+|+++||||++|||||||
T Consensus 34 ~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~aiEliH~asLIHDDIp~ 94 (302)
T 3p8r_A 34 QTLPLIEAMRYGLLLG--GKRARPYLVYITGQMLGCEL-----------------SDLDTPASAVECIHAYSLIHDDLPA 94 (302)
T ss_dssp TTSSHHHHHHHHHHSC--CSCHHHHHHHHHHHTTTCCG-----------------GGTHHHHHHHHHHHHHHHHHHTCHH
T ss_pred CcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHCCccc
Confidence 3678999999999989 99999999999999998642 23788999999999999999999
Q ss_pred cCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCC--C------HHHHHHHHHHH--HHHHhhhHhhhcccCCC
Q 020765 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--N------TEVVTLLATVV--EHLVTGETMQMTTSSDQ 152 (321)
Q Consensus 83 ~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~--~------~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~ 152 (321)
||+|++|||+||+|++||+++|||+||+|+++||+.+++.. + .++++.++++. ..++.||.+|+.+.. .
T Consensus 95 mD~s~~RRG~pt~h~~~G~~~AIlaGD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~-~ 173 (302)
T 3p8r_A 95 MDDDELRRGKPTCHIQFDEATAILTGDALQTLAFTILAEGDLSAAGETQRVAMLQALAEASGAQGMCLGQALDLAAEN-R 173 (302)
T ss_dssp HHCCC--------------HHHHHHHHHHHHHHHHHHHHSCCCHHHHTTHHHHHHHHHHHHSTTTHHHHHHHHHHTTT-S
T ss_pred ccCCCcCCCCcchhhhcCHHHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHhHhHHHHhHHHHHHccC-C
Confidence 99999999999999999999999999999999999998864 1 24677788776 589999999999875 4
Q ss_pred CCCHHHHHHHHhhhhHHHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhcc
Q 020765 153 RCSMDYYMQKTYYKTASLISNSCKAIALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGI 231 (321)
Q Consensus 153 ~~s~~~y~~~~~~KTa~l~~~~~~~ga~lag-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk 231 (321)
.+++++|++|+++|||+||++||++|++++| .+++..+.++.||.++|+||||+||++|++++++.+|||+|+|+++||
T Consensus 174 ~~s~~~y~~i~~~KTa~L~~~~~~~ga~lag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK 253 (302)
T 3p8r_A 174 LISLEELETIHRNKTGALMRCAIRLGALAAGEKGRAMLPHLDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNK 253 (302)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------C
T ss_pred CCCHHHHHHHhccCcHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCC
Confidence 7899999999999999999999999999999 788888999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHH
Q 020765 232 ITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLD 311 (321)
Q Consensus 232 ~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~ 311 (321)
+|||+++ +++++++.+++|.++|.+.|+.+|.+. +.|..
T Consensus 254 ~T~p~l~---------------------------------~l~~a~~~a~~~~~~A~~~L~~l~~~~--------~~L~~ 292 (302)
T 3p8r_A 254 STYPALL---------------------------------GLEGAQQKAHTLLQEALLALEAIPYNT--------EHLEE 292 (302)
T ss_dssp CCHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHTTCSSCT--------HHHHH
T ss_pred chHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhCCccH--------HHHHH
Confidence 9999999 568899999999999999999999765 68999
Q ss_pred HHHHHHhccC
Q 020765 312 LTHRVITRNK 321 (321)
Q Consensus 312 l~~~~~~R~~ 321 (321)
|++++++|++
T Consensus 293 l~~~~~~R~~ 302 (302)
T 3p8r_A 293 FARYVVERKN 302 (302)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHHhccC
Confidence 9999999975
No 30
>2her_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structural genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* 2q58_A*
Probab=100.00 E-value=1e-65 Score=484.06 Aligned_cols=284 Identities=16% Similarity=0.176 Sum_probs=255.2
Q ss_pred hhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 020765 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDA 86 (321)
Q Consensus 7 ~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI~D~s 86 (321)
+.+.++++|.. .| |||+||++|+++++++|+..+ +..+.+..+|++|||||+||||||||||+|
T Consensus 58 ~~~~~~~~y~~-~G--GKrlRp~l~l~~~~~~g~~~~-------------~~~~~~~~~A~avEllH~asLIHDDImD~s 121 (368)
T 2her_A 58 EYYLNCIDYNV-KK--GKHIRGKILVLISSLSSAYSN-------------IKRDSIYLLGWVVEAIQALILIADDIMDSG 121 (368)
T ss_dssp HHHHHHHHHHT-TS--STTTTTC-CHHHHTTTTCCCS-------------SSHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhh-CC--CCccchHHHHHHHHHhCCCCc-------------ccHHHHHHHHHHHHHHHHHHHHHcccccCC
Confidence 56778888988 69 999999999999999975322 123568899999999999999999999999
Q ss_pred CCCCCcCchhhhcChhHHHHHHHHHH---HHHHHHHHcC-C---CHHHHHHHHHHHHHHHhhhHhhhcccCCC-CCCH-H
Q 020765 87 DTRRGIGSLNFVMGNKLAVLAGDFLL---SRACVALASL-K---NTEVVTLLATVVEHLVTGETMQMTTSSDQ-RCSM-D 157 (321)
Q Consensus 87 ~~RRG~pt~~~~~G~~~Ail~Gd~l~---~~a~~~l~~~-~---~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~-~~s~-~ 157 (321)
++|||+||||++||+.+|||+||+|+ +.+|..+++. . ..++++.+++++..++.||.+|+.+.... .++. +
T Consensus 122 ~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~~ 201 (368)
T 2her_A 122 KFRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISE 201 (368)
T ss_dssp CEETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHH
T ss_pred CCCCCCccHHhcCChHHHHHHHHHHHHHHHHHHHHHHHhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCChHH
Confidence 99999999999999999999999999 8888777653 2 24789999999999999999999987643 4455 9
Q ss_pred HHHHHHhhhhHHH-HHHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcH
Q 020765 158 YYMQKTYYKTASL-ISNSCKAIALLAGQTAEV--AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITA 234 (321)
Q Consensus 158 ~y~~~~~~KTa~l-~~~~~~~ga~lag~~~~~--~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tl 234 (321)
+|++|+++|||+| |++||++|++++|.+++. .+.++.||.++|+||||+||++|++ .+|| +|+||++||+||
T Consensus 202 ~y~~ii~~KTa~Lsf~~~~~lGa~lag~~~~~~~~~~l~~~g~~lG~aFQI~DD~LD~~----~~GK-~g~Dl~egK~T~ 276 (368)
T 2her_A 202 RYFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYL----FNDS-NADDICRFKLTW 276 (368)
T ss_dssp HHHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHH----SCCS-SSCTTTTTCCCH
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCC-CCChHhCCcccH
Confidence 9999999999999 999999999999998887 8899999999999999999999999 7899 999999999999
Q ss_pred HHHHHHhh-ChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHH
Q 020765 235 PILFAMEE-FPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLT 313 (321)
Q Consensus 235 p~l~al~~-~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~ 313 (321)
|++++++. +++.++.+.+.+..++ ++++++++++|+++++++++++|.++|.+.|+.+|.++ .|+.|..|+
T Consensus 277 pvi~al~~a~~~~r~~L~~~~~~~~--~~v~~li~~~g~~~~~~~~~~~~~~~A~~~L~~lp~~~------~k~~L~~l~ 348 (368)
T 2her_A 277 PLQKSFEIADEEMKLKISENYGKNS--SLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDS------LQKVFIHLI 348 (368)
T ss_dssp HHHSSTTTCCHHHHHHHHHHTTTCH--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHH------HHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHhCCcH--HHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHhCCCcH------HHHHHHHHH
Confidence 99999997 5677888877776655 89999999999999999999999999999999999987 999999999
Q ss_pred HHHHhc
Q 020765 314 HRVITR 319 (321)
Q Consensus 314 ~~~~~R 319 (321)
++++++
T Consensus 349 ~~i~~~ 354 (368)
T 2her_A 349 HQISEL 354 (368)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999986
No 31
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=100.00 E-value=4.2e-65 Score=470.49 Aligned_cols=258 Identities=28% Similarity=0.415 Sum_probs=236.5
Q ss_pred chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--c
Q 020765 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV--L 83 (321)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI--~ 83 (321)
++.+.++++|++..| |||+||.|++++++++|++. +.+..+|+++||||+|||||||| |
T Consensus 29 ~~~l~~~~~y~~~~g--GKrlRp~l~l~~~~~~g~~~-----------------~~~~~~A~avEliH~asLiHDDiP~~ 89 (299)
T 1rqj_A 29 NTPVVETMQYGALLG--GKRLRPFLVYATGHMFGVST-----------------NTLDAPAAAVECIHAYSLIHDDLPAM 89 (299)
T ss_dssp TSHHHHHHHHHHHSS--CCCHHHHHHHHHHHHTTCCH-----------------HHHHHHHHHHHHHHHHHHHHHTSTTT
T ss_pred cHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHhHHHhCCChhh
Confidence 678999999999989 99999999999999998621 34788999999999999999999 9
Q ss_pred CCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcC-----C---CHHHHHHHHHHH--HHHHhhhHhhhcccCCCC
Q 020765 84 DDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL-----K---NTEVVTLLATVV--EHLVTGETMQMTTSSDQR 153 (321)
Q Consensus 84 D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~-----~---~~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~~ 153 (321)
|+|++|||+||+|++||+++|||+||+|+++||+.+++. + ..++++.+++++ ..++.||.+|+.+..+ .
T Consensus 90 D~s~~RRG~pt~h~~~G~~~Ail~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~dl~~~~~-~ 168 (299)
T 1rqj_A 90 DDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGK-H 168 (299)
T ss_dssp TCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTT-C
T ss_pred cCCCCCCCCCChhhhcChHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhhhHHHHhHHHHHhccCC-C
Confidence 999999999999999999999999999999999999874 1 135777888876 7899999999998766 7
Q ss_pred CCHHHHHHHHhhhhHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccC
Q 020765 154 CSMDYYMQKTYYKTASLISNSCKAIALL-AGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII 232 (321)
Q Consensus 154 ~s~~~y~~~~~~KTa~l~~~~~~~ga~l-ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~ 232 (321)
+++++|++|+++|||+||++||++|+++ +|.+++..+.++.||.++|+||||+||++|++++++.+|||+|+|+++||+
T Consensus 169 ~~~~~y~~i~~~KTa~L~~~~~~~ga~l~ag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~~~~~~GK~~g~Dl~~gK~ 248 (299)
T 1rqj_A 169 VPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKS 248 (299)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTTHHHHHTCC
T ss_pred CCHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHHcCCC
Confidence 8999999999999999999999999999 998888999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHH
Q 020765 233 TAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDL 312 (321)
Q Consensus 233 Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l 312 (321)
|||++++ ++++++.+++|.++|.+.|+.+|.++. .++.|.+|
T Consensus 249 T~p~l~~---------------------------------l~~a~~~~~~~~~~A~~~L~~l~~~~~-----~~~~L~~l 290 (299)
T 1rqj_A 249 TYPALLG---------------------------------LEQARKKARDLIDDARQSLKQLAEQSL-----DTSALEAL 290 (299)
T ss_dssp CHHHHHC---------------------------------HHHHHHHHHHHHHHHHHHHHHHHTTTC-----CCHHHHHH
T ss_pred cHHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHhCCCCcH-----HHHHHHHH
Confidence 9999994 567899999999999999999987321 46899999
Q ss_pred HHHHHhccC
Q 020765 313 THRVITRNK 321 (321)
Q Consensus 313 ~~~~~~R~~ 321 (321)
++++++|++
T Consensus 291 ~~~~~~R~~ 299 (299)
T 1rqj_A 291 ADYIIQRNK 299 (299)
T ss_dssp HHHHHHCCC
T ss_pred HHHHHhccC
Confidence 999999975
No 32
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=100.00 E-value=1.2e-64 Score=472.58 Aligned_cols=256 Identities=27% Similarity=0.346 Sum_probs=218.9
Q ss_pred CchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--
Q 020765 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV-- 82 (321)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI-- 82 (321)
.++.+.++++|++..| |||+||.|++++++++|++. +.+..+|+++||||+||||||||
T Consensus 69 ~~~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~~-----------------~~~~~~A~aiEliH~asLIHDDiPa 129 (335)
T 2h8o_A 69 RPQNLLEAMRHGVLNG--GKRLRPFLVIESVALLGGDA-----------------EAGLHVGAALECLHCYSLVHDDLPA 129 (335)
T ss_dssp CCHHHHHHHHHHHHTS--CSCHHHHHHHHHHHHTTCCH-----------------HHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred CcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHCCchh
Confidence 4688999999999989 99999999999999998621 34688999999999999999999
Q ss_pred cCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcC--C-----CHHHHHHHHHHH--HHHHhhhHhhhcccCCCC
Q 020765 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL--K-----NTEVVTLLATVV--EHLVTGETMQMTTSSDQR 153 (321)
Q Consensus 83 ~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~--~-----~~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~~ 153 (321)
||+|++|||+||+|++||+++|||+||+|+++||+.+++. . ..++++.+++++ ..++.||.+|+.+..+ .
T Consensus 130 mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~ls~a~g~~~~~~GQ~lDl~~~~~-~ 208 (335)
T 2h8o_A 130 MDDDDLRRGQPTVHRKFDEATAILAGDSLLTLAFDIIASDDNPLAAERKAALVISLARAAGIGGMAGGQALDLAAEKK-A 208 (335)
T ss_dssp TTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHSTTSCSCHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHS-C
T ss_pred ccCCCcCCCCCcHhhhcChHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHhhhhHHHHHHHHHHHccCC-C
Confidence 9999999999999999999999999999999999999986 1 235788888888 8899999999998766 7
Q ss_pred CCHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCc
Q 020765 154 CSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 233 (321)
Q Consensus 154 ~s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~T 233 (321)
+++++|++|+++|||+||++||++|++++|.+++..+.++.||.++|+||||+||++|++++++.+|||+|+|+++||+|
T Consensus 209 ~~~~~y~~i~~~KTa~L~~~a~~~Ga~laga~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T 288 (335)
T 2h8o_A 209 PDEDGIITLQAMKTGALLRFACEAGAIIAGSNQAERQRLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGT 288 (335)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------CCC
T ss_pred CCHHHHHHHHHhchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHH
Q 020765 234 APILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLT 313 (321)
Q Consensus 234 lp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~ 313 (321)
||+++ +++++++.+++|.++|.+.|+.+|. .++.|.+|+
T Consensus 289 ~p~l~---------------------------------~le~a~~~a~~~~~~A~~~L~~l~~--------~~~~L~~l~ 327 (335)
T 2h8o_A 289 LVALR---------------------------------GEAWAREKLQEQVAEASELLAPYGE--------KAAILIAAA 327 (335)
T ss_dssp HHHHH---------------------------------CHHHHHHHHHHHHHHHHHHTGGGGG--------GGHHHHHHH
T ss_pred HHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhCch--------hHHHHHHHH
Confidence 99999 4678999999999999999999985 357899999
Q ss_pred HHHHhccC
Q 020765 314 HRVITRNK 321 (321)
Q Consensus 314 ~~~~~R~~ 321 (321)
+++++|++
T Consensus 328 ~~i~~R~~ 335 (335)
T 2h8o_A 328 RFIAERKS 335 (335)
T ss_dssp HHHHC---
T ss_pred HHHHhccC
Confidence 99999974
No 33
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=100.00 E-value=4.3e-64 Score=463.19 Aligned_cols=258 Identities=25% Similarity=0.337 Sum_probs=224.1
Q ss_pred CchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHH--HHHHHHHHHHHHHHHHHhhh
Q 020765 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQ--QCIAEITEMIHVASLLHDDV 82 (321)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~lA~~vEllh~asLihDDI 82 (321)
.++.+.++++|++..| |||+||.|++++++++|++.+ .+ ..+|+++||||++|||||||
T Consensus 32 ~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~~~~~~~A~aiEliH~aSLIHDDi 92 (309)
T 3pde_A 32 QDAQLAAAMTYSVLAG--GKRLRPLLTVATMQSLGVTFV-----------------PERHWRPVMALELLHTYSLIHDDL 92 (309)
T ss_dssp SCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHHTTCCCC-----------------HHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CcHHHHHHHHHHHhCC--CCchHHHHHHHHHHHhCCCHH-----------------HHhHhHHHHHHHHHHHHHHHHCCc
Confidence 3678999999999989 999999999999999987432 24 78999999999999999999
Q ss_pred --cCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCC-----HHHHHHHHHHH--HHHHhhhHhhhcccCCCC
Q 020765 83 --LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-----TEVVTLLATVV--EHLVTGETMQMTTSSDQR 153 (321)
Q Consensus 83 --~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~-----~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~~ 153 (321)
||+|++|||+||+|++||+++|||+||+|+++||+.+++... .++++.++++. ..++.||.+|+.+... .
T Consensus 93 P~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~l~~a~g~~~m~~GQ~lDl~~~~~-~ 171 (309)
T 3pde_A 93 PAMDNDALRRGEPTNHVKFGAGMATLAGDGLLTLAFQWLTATDLPATMQAALVQALATAAGPSGMVAGQAKDIQSEHV-N 171 (309)
T ss_dssp TTTTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTC-C
T ss_pred hhccCCCCCCCCcchhhhcChHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhhHhHHHHhHHHHHHccCC-C
Confidence 999999999999999999999999999999999999988642 25778888876 6899999999998755 6
Q ss_pred CCHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCc
Q 020765 154 CSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 233 (321)
Q Consensus 154 ~s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~T 233 (321)
+++++|++|+++|||+||++||++|++++|++++..+.++.||.++|+||||+||++|++++++.+|||+|+|+++||+|
T Consensus 172 ~t~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T 251 (309)
T 3pde_A 172 LPLSQLRVLHKEKTGALLHYAVQAGLILGQAPEAQWPAYLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNT 251 (309)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CTTTSSS
T ss_pred CCHHHHHHHHHhccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCcc
Confidence 89999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHH
Q 020765 234 APILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLT 313 (321)
Q Consensus 234 lp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~ 313 (321)
||+++ +++.+.+.++++.++|.+.|+.+|.+-. .+. |..|+
T Consensus 252 ~p~l~---------------------------------al~~a~~~~~~~~~~a~~~l~~~~~~~~-----~~~-L~~l~ 292 (309)
T 3pde_A 252 YPGKL---------------------------------GLIGANQALIDTIHSGQAALQGLPTSTQ-----RDD-LAAFF 292 (309)
T ss_dssp HHHHH---------------------------------CHHHHHHHHHHHHHHHHHHHHTSCCCHH-----HHH-HHGGG
T ss_pred HHHHH---------------------------------HHHHhHHHHHHHHHHHHHHHHHhhhccC-----HHH-HHHHH
Confidence 99999 5677889999999999999999776531 233 99999
Q ss_pred HHHHhccC
Q 020765 314 HRVITRNK 321 (321)
Q Consensus 314 ~~~~~R~~ 321 (321)
+|+++|++
T Consensus 293 ~~~~~r~~ 300 (309)
T 3pde_A 293 SYFDTERV 300 (309)
T ss_dssp GGSCTTTT
T ss_pred HHHHHhhc
Confidence 99999974
No 34
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=5.7e-64 Score=458.36 Aligned_cols=251 Identities=27% Similarity=0.338 Sum_probs=224.6
Q ss_pred CchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--
Q 020765 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV-- 82 (321)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI-- 82 (321)
.++.+.++++|++..| |||+||.|++++++++|++. +.+..+|+++||||+||||||||
T Consensus 30 ~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~avEliH~asLIHDDIP~ 90 (284)
T 2ftz_A 30 WDLLTEEAMLYSATVG--GXRIRPLLVLTLGEDLGVEE-----------------EXLLDVAVAVELFHTASLIHDDLPP 90 (284)
T ss_dssp SCCHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHTCCH-----------------HHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CCHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCcCH-----------------HHHHHHHHHHHHHHHHHHHhCCchh
Confidence 3578999999999989 99999999999999998621 34788999999999999999999
Q ss_pred cCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCC-CCCHHHHHH
Q 020765 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQ-RCSMDYYMQ 161 (321)
Q Consensus 83 ~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~-~~s~~~y~~ 161 (321)
||+|++|||+||+|++||+++|||+||+|+++||+.+++.++.++++.+++++..++.||.+|+.+..+. .+++++|++
T Consensus 91 ~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~l~~~~~~~~~GQ~ldl~~~~~~~~~~~~~y~~ 170 (284)
T 2ftz_A 91 IDNADFRRGXPSCHRTYGEDIALLAGDGLFFLAFSQISXIGNSXIFEEFSETAYXLLLGEAMDVEFERRXMEVSQEMVER 170 (284)
T ss_dssp TTCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHH
T ss_pred cCCCCCCCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHhhhhHHHHHhccCcCCCCHHHHHH
Confidence 9999999999999999999999999999999999999998767899999999999999999999987665 789999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHHHHh
Q 020765 162 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME 241 (321)
Q Consensus 162 ~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~ 241 (321)
|+++|||+||++||++|++++|.+++ .++.||.++|+||||+||++|++++++.+|||+|+|++ |+|||+++
T Consensus 171 i~~~KTa~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DD~lD~~~d~~~~GK~~g~Dl~--K~T~p~l~--- 242 (284)
T 2ftz_A 171 MYAFXTGALFAFCFSAPFILXGXDHT---XMXLLGEXFGVAFQIYDDLXDILGSFEKVGKDLGKDTE--XVTLVXXV--- 242 (284)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------CHHHHH---
T ss_pred HHHhhhHHHHHHHHHHHHHHhCCChh---HHHHHHHHHHHHHHHHHhhhhhcCCHHhhCCCcchhcc--ccchHHHH---
Confidence 99999999999999999999998877 89999999999999999999999999999999999999 99999999
Q ss_pred hChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHH-HHHHHHHHHhc
Q 020765 242 EFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRA-LLDLTHRVITR 319 (321)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-L~~l~~~~~~R 319 (321)
+++++++++++|.++|.+.|+.+|+ + .++. |.+|++++++|
T Consensus 243 ------------------------------~l~~a~~~a~~~~~~A~~~L~~l~~-~------~~~~~L~~l~~~~~~R 284 (284)
T 2ftz_A 243 ------------------------------GIQXAREMADXYYEEVLXGIESEGL-F------RTLFLLXELXQMVEER 284 (284)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHHHHHHTTC-H------HHHHHHHHHHHHHHTC
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHHHHHhCCc-h------hHHHHHHHHHHHHHcC
Confidence 4678899999999999999999987 5 6788 99999999987
No 35
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=100.00 E-value=2.8e-64 Score=465.97 Aligned_cols=255 Identities=27% Similarity=0.406 Sum_probs=220.6
Q ss_pred CchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--
Q 020765 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV-- 82 (321)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI-- 82 (321)
.++.|.++++|++..| |||+||.|++++++++|++ .+.+..+|+++||||+||||||||
T Consensus 34 ~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~-----------------~~~~~~~A~aiEliH~aSLIHDDip~ 94 (313)
T 3lom_A 34 PAPQIRSALHYALFSG--GKRIRPILVYLAGDLIDVD-----------------QGVLDIIAAALELTHCYSLIHDDLPA 94 (313)
T ss_dssp CCHHHHHHHHHHHCCS--SCCHHHHHHHHHHHHTTCC-----------------HHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCC-----------------HHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 3678999999999989 9999999999999999863 135789999999999999999999
Q ss_pred cCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcC--C--C----HHHHHHHHHHH--HHHHhhhHhhhcccCCC
Q 020765 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL--K--N----TEVVTLLATVV--EHLVTGETMQMTTSSDQ 152 (321)
Q Consensus 83 ~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~--~--~----~~~~~~~~~~~--~~~~~Gq~~d~~~~~~~ 152 (321)
||+|++|||+||+|++||++.|||+||+|+++||+.+++. . . .++++.+++++ ..++.||.+|+.+..+.
T Consensus 95 mD~~~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~~~ 174 (313)
T 3lom_A 95 MDNDDLRRGKPSCHKAFDEATAILVGDGMQALAIEVLLMRLSPLLPAAQVVAITQVLVNASGISGMVSGQSLDLSELAKS 174 (313)
T ss_dssp TTCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTSS
T ss_pred ccCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHhHhHHHHhHHHHHHccCCC
Confidence 9999999999999999999999999999999999998864 1 1 24677777775 68999999999998766
Q ss_pred CCCHHHHHHHHhhhhHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhc
Q 020765 153 RCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHG 230 (321)
Q Consensus 153 ~~s~~~y~~~~~~KTa~l~~~~~~~ga~lag--~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~eg 230 (321)
.+++++|++|+++|||+||++||++ ++++| ++++..+.++.||.++|+||||+||++|++++++.+|||+|+|+++|
T Consensus 175 ~~t~~~y~~i~~~KTg~L~~~a~~~-a~lag~~a~~~~~~~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~g 253 (313)
T 3lom_A 175 SVTEEQLREIHLLKTGKLILACFEM-VLAAQHEVSEQIKSALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQ 253 (313)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHH-HHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------
T ss_pred CCCHHHHHHHHHcCcHHHHHHHHHH-HHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcC
Confidence 8899999999999999999999999 99999 89999999999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHH
Q 020765 231 IITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALL 310 (321)
Q Consensus 231 k~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~ 310 (321)
|+|||+++ +++++++.++++.++|.+.|+.||.+. +.|.
T Consensus 254 K~T~p~l~---------------------------------~l~~a~~~a~~~~~~A~~~L~~l~~~~--------~~L~ 292 (313)
T 3lom_A 254 KTTFATLF---------------------------------NKQQLEEEIAVHYQIAMDSLRLFGSKA--------AALI 292 (313)
T ss_dssp CCCHHHHS---------------------------------CHHHHHHHHHHHHHHHHHTTTTTGGGG--------HHHH
T ss_pred CccHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhCCccH--------HHHH
Confidence 99999999 678899999999999999999998654 7899
Q ss_pred HHHHHHHhcc
Q 020765 311 DLTHRVITRN 320 (321)
Q Consensus 311 ~l~~~~~~R~ 320 (321)
+|++++++|+
T Consensus 293 ~la~~~~~R~ 302 (313)
T 3lom_A 293 ELTKQLQNRS 302 (313)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 9999999996
No 36
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=100.00 E-value=2.4e-64 Score=463.55 Aligned_cols=252 Identities=29% Similarity=0.364 Sum_probs=209.4
Q ss_pred chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--c
Q 020765 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV--L 83 (321)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI--~ 83 (321)
++.+.++++|. ..| |||+||.|++++++++|++ .+.+..+|++|||||++||||||| |
T Consensus 27 ~~~l~~~~~y~-~~g--GKrlRp~L~l~~~~~~g~~-----------------~~~~~~~A~avEliH~asLIHDDip~m 86 (297)
T 3m0g_A 27 AGDLRDAMAYA-AQG--GKRLRAFLAIESAAIHGIS-----------------MAQAMPAALAVEALHAYSLVHDDMPCM 86 (297)
T ss_dssp CSHHHHHHHHH-HSC--SCCHHHHHHHHHHHHTTCC-----------------HHHHHHHHHHHHHHHHHHHHHHTSTTT
T ss_pred cHHHHHHHHHH-cCC--CCcHHHHHHHHHHHHhCCC-----------------HHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 67899999999 889 9999999999999999863 135789999999999999999999 9
Q ss_pred CCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCC--C----HHHHHHHHHHH--HHHHhhhHhhhcccC-CCCC
Q 020765 84 DDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK--N----TEVVTLLATVV--EHLVTGETMQMTTSS-DQRC 154 (321)
Q Consensus 84 D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~--~----~~~~~~~~~~~--~~~~~Gq~~d~~~~~-~~~~ 154 (321)
|+|++|||+||+|++||+++|||+||+|+++||+.+++.. + .++++.+++++ ..++.||.+|+.+.. ...+
T Consensus 87 D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~~~~~ 166 (297)
T 3m0g_A 87 DNDDLRRGLPTVHKKWDDATAVLAGDALQTLAFELCTDPVLGSAENRVALVAALAQASGAEGMVYGQALDIAAETAAVPL 166 (297)
T ss_dssp TCCSEETTEECHHHHSCHHHHHHHHHHHHHHHHHHTTCGGGCCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHHTTSSSCC
T ss_pred CCCCccCCCCCchhhcChHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhcCCCC
Confidence 9999999999999999999999999999999999998753 2 35788899888 789999999999872 3478
Q ss_pred CHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcH
Q 020765 155 SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITA 234 (321)
Q Consensus 155 s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tl 234 (321)
++++|++|+++|||+||++||++|++++|.+++ .++.||.++|+||||+||++|++++++.+|||+|+|+++||+||
T Consensus 167 ~~~~y~~i~~~KTg~L~~~~~~~ga~lag~~~~---~l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~ 243 (297)
T 3m0g_A 167 TLDEIIRLQAGKTGALISFAAQAGAILAGADRG---PLTAYATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATF 243 (297)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHHTCCCH---HHHHHHHHHHHHHHHHTTCC---------------------CCH
T ss_pred CHHHHHHHHccchHHHHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccH
Confidence 999999999999999999999999999998876 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHH
Q 020765 235 PILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTH 314 (321)
Q Consensus 235 p~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~~ 314 (321)
|+++ +++++++.++++.++|.+.|+.||.+. +.|.+|++
T Consensus 244 p~l~---------------------------------~l~~a~~~~~~~~~~A~~~L~~~~~~~--------~~L~~l~~ 282 (297)
T 3m0g_A 244 VSLL---------------------------------GLAGAKSRAADLVAEAEAALAPYGEAA--------STLRACAR 282 (297)
T ss_dssp HHHH---------------------------------CSSHHHHHHHHHHHHHHHHTGGGGGGG--------HHHHHHHH
T ss_pred HHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhCCCCH--------HHHHHHHH
Confidence 9999 567889999999999999999998765 78999999
Q ss_pred HHHhccC
Q 020765 315 RVITRNK 321 (321)
Q Consensus 315 ~~~~R~~ 321 (321)
++++|++
T Consensus 283 ~~~~R~~ 289 (297)
T 3m0g_A 283 YVIERDK 289 (297)
T ss_dssp HHTC---
T ss_pred HHHHhcc
Confidence 9999974
No 37
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=100.00 E-value=2.2e-63 Score=456.82 Aligned_cols=257 Identities=27% Similarity=0.412 Sum_probs=225.7
Q ss_pred chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 020765 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDD 85 (321)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI~D~ 85 (321)
+|.+.++++|++..| |||+||.|++++++++|++.+ .+..+|+++||||+||||||||||+
T Consensus 27 ~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~~-----------------~~~~~A~avEliH~asLIHDDi~D~ 87 (295)
T 3ipi_A 27 DPGLKKMVEHVCHSG--GKRIRPIILLLVSEICSGSYS-----------------RSLNAALAVEMMHSASLIHDDLLDQ 87 (295)
T ss_dssp SHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHHSCCG-----------------GGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCHH-----------------HHHHHHHHHHHHHHHHHHHCcCcCC
Confidence 478999999999989 999999999999999986422 3678999999999999999999999
Q ss_pred CCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHHHHhh
Q 020765 86 ADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYY 165 (321)
Q Consensus 86 s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~~~~~ 165 (321)
|++|||+||+|++||++.|||+||||+++||+.+++. +.++++.+++++..++.||.+|+.+..+ .+++++|++|+++
T Consensus 88 s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~ll~~~-~~~~~~~~~~~~~~~~~GQ~~dl~~~~~-~~t~~~y~~~i~~ 165 (295)
T 3ipi_A 88 GLVRRNLPSAPEKFGPSGALLCGDYLIAKSIAFISPY-GEKVIQDFGKAGMDMAEGEVLDLKLEDE-SFGENDYFKCIYK 165 (295)
T ss_dssp HTSCTTSCCCCCSSCHHHHHHHHHHHHHHHHHHHGGG-CHHHHHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHH
T ss_pred CCCCCCCccHHHhcCccHHHHHHHHHHHHHHHHHHHc-hHHHHHHHHHHHHHHHccchHHHHccCC-CCCHHHHHHHHHh
Confidence 9999999999999999999999999999999999876 4689999999999999999999998765 4788999999999
Q ss_pred hhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHHHHhhChH
Q 020765 166 KTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQ 245 (321)
Q Consensus 166 KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~~~~ 245 (321)
|||+||++||++|++++|.+++..+.++.||.++|+||||+||++|++++++ || |+.+||+|||++++++..+
T Consensus 166 KTg~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lGlaFQI~DDilD~~~~~~--gk----d~~~gk~Tlp~l~al~~~~- 238 (295)
T 3ipi_A 166 KTASLFAISASIGAYTGGAEEELAERFSHFGNALGTAYQIVDDILEFLEVVE--GK----ESKFTSETLPHIYMKSTSK- 238 (295)
T ss_dssp HTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--C-----------CCHHHHHTTTSCH-
T ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--CC----CcccCcccHHHHHHHhcCc-
Confidence 9999999999999999999999999999999999999999999999998763 54 6789999999999886532
Q ss_pred HHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHHHHHhcc
Q 020765 246 LRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTHRVITRN 320 (321)
Q Consensus 246 ~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~~~~~~R~ 320 (321)
.++++++++.+++|.++|++.|+.||+++ .++.|.+|+++++.|.
T Consensus 239 ------------------------~~~le~a~~~a~~~~~~A~~~L~~lp~~~------~~~~L~~l~~~~~~~~ 283 (295)
T 3ipi_A 239 ------------------------EEALKKSIDCVKLHVAAAKETLETFRECP------ARDKLFQITDYITVDM 283 (295)
T ss_dssp ------------------------HHHHHHHHHHHHHHHHHHHHHHTTSCCSH------HHHHHHHHHHHTTGGG
T ss_pred ------------------------hhHHHHHHHHHHHHHHHHHHHHHhCCCch------HHHHHHHHHHHHHHhC
Confidence 14699999999999999999999999888 8999999999999874
No 38
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=100.00 E-value=2.2e-61 Score=446.20 Aligned_cols=263 Identities=25% Similarity=0.305 Sum_probs=220.2
Q ss_pred CCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh-
Q 020765 4 AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV- 82 (321)
Q Consensus 4 ~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI- 82 (321)
+.+|.+.++++|++..| |||+||.|++++++++|++.. .++..+.+..+|++|||||++|||||||
T Consensus 31 ~~~~~l~~a~~y~~~~g--GKrlRp~Lvl~~~~~~g~~~~-----------~~~~~~~~~~~A~aiEliH~aSLIHDDIp 97 (311)
T 3llw_A 31 SFHPYLEKAFFEMVLNG--GKRFRPKLFLAVLCALVGQKD-----------YSNQQTEYFKIALSIECLHTYSLIHDDLP 97 (311)
T ss_dssp SSCSSHHHHHHHHHHSC--CCCHHHHHHHHHHHHHSCHHH-----------HHHSHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred CCcHHHHHHHHHHhhCC--CCchHHHHHHHHHHHhCCCcc-----------cccchHHHHHHHHHHHHHHHHHHHHCCcc
Confidence 45789999999999989 999999999999999986310 0122356889999999999999999999
Q ss_pred -cCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHc--CCC---HHHHHHHHHH--HHHHHhhhHhhhcccCCCCC
Q 020765 83 -LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS--LKN---TEVVTLLATV--VEHLVTGETMQMTTSSDQRC 154 (321)
Q Consensus 83 -~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~--~~~---~~~~~~~~~~--~~~~~~Gq~~d~~~~~~~~~ 154 (321)
||+|++|||+||+|++||++.|||+||+|++.||+.+++ .+. .++++.++++ +..++.||.+|+.+.. ..+
T Consensus 98 ~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lDl~~~~-~~~ 176 (311)
T 3llw_A 98 CMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSNALLESHIIVELIKILSANGGIKGMILGQALDCYFEN-TPL 176 (311)
T ss_dssp TTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTT-SCC
T ss_pred ccCCCcccCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcC-CCC
Confidence 999999999999999999999999999999999999987 332 2467788887 5789999999999873 478
Q ss_pred CHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCc
Q 020765 155 SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVA-ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 233 (321)
Q Consensus 155 s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~-~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~T 233 (321)
++++|++|+++|||+||++||++|++++|.+++.. +.++.||.++|+||||+||++|++++++.+||+.++ ++||+|
T Consensus 177 t~~~y~~i~~~KTg~L~~~a~~lga~laga~~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~--~~gK~T 254 (311)
T 3llw_A 177 NLEQLTFLHEHKTAKLISASLIMGLVASGIKDEELFKWLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHL--DSAKNS 254 (311)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------------CCSC
T ss_pred CHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCccccc--ccCcch
Confidence 99999999999999999999999999999998888 899999999999999999999999999999999876 999999
Q ss_pred HHHHHHHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHH-HHHHHHH
Q 020765 234 APILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKS-RRALLDL 312 (321)
Q Consensus 234 lp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~~L~~l 312 (321)
||+++ +++.++..++++.++|.+.|+.++.-. .. .+.|.++
T Consensus 255 ~p~l~---------------------------------~l~~a~~~~~~~~~~a~~~l~~~~~~~-----~~~~~~l~~l 296 (311)
T 3llw_A 255 FVNLL---------------------------------GLERANNYAQTLKTEVLNDLDALKPAY-----PLLQENLNAL 296 (311)
T ss_dssp HHHHH---------------------------------CHHHHHHHHHHHHHHHHHHHTTSTTTC-----HHHHHHHHHH
T ss_pred HHHHH---------------------------------HHHHHHHHHHHHHHHHHHHhhhccccC-----ccHHHHHHHH
Confidence 99999 567788999999999999999965322 02 4789999
Q ss_pred HHHHHhcc
Q 020765 313 THRVITRN 320 (321)
Q Consensus 313 ~~~~~~R~ 320 (321)
++|+++|.
T Consensus 297 ~~~~~~r~ 304 (311)
T 3llw_A 297 LNTLFKGE 304 (311)
T ss_dssp HHHHHC--
T ss_pred HHHHHhcc
Confidence 99999995
No 39
>2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A*
Probab=100.00 E-value=3.8e-62 Score=462.61 Aligned_cols=284 Identities=15% Similarity=0.176 Sum_probs=238.7
Q ss_pred hHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcCCCC
Q 020765 8 KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLDDAD 87 (321)
Q Consensus 8 ~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI~D~s~ 87 (321)
.+.++++|.+. | |||+||++++++++++++.... ..+.++.+||||||||+||||||||||+|+
T Consensus 59 ~~~~~l~Y~~~-G--GKrlRp~l~~~~~~~~~~~~~~-------------~~e~~~~la~aiEliH~asLiHDDimD~s~ 122 (368)
T 2q58_A 59 YYLNCIDYNVK-K--GKHIRGKILVLISSLSSAYSNI-------------KRDSIYLLGWVVEAIQALILIADDIMDSGK 122 (368)
T ss_dssp HHHHHHHHHTT-C--STTTTTC-CHHHHTTTTCCCSS-------------SHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhcCCC-C--ccchhHHHHHHHHHHhCCCccC-------------CHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Confidence 47789999995 9 9999999999999999864331 235578899999999999999999999999
Q ss_pred CCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCC-------HHHHHHHHHHHHHHHhhhHhhhcccC--CCCCCHHH
Q 020765 88 TRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-------TEVVTLLATVVEHLVTGETMQMTTSS--DQRCSMDY 158 (321)
Q Consensus 88 ~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~-------~~~~~~~~~~~~~~~~Gq~~d~~~~~--~~~~s~~~ 158 (321)
+|||+||+|++||+++|||+||+|++.|++.+.+... .++++.+++++..++.||.+|+.+.. ....++++
T Consensus 123 ~RRG~pt~h~~~G~~~AIl~Gd~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~GQ~lDl~~~~~~~~~~~~e~ 202 (368)
T 2q58_A 123 FRRGAPCWYIVHGQSNAINDIFFLKMLSLSLIFELSSVFGNDIVMKIQKIYNESIFFTVLGQHLDLSYFDLSKADKISER 202 (368)
T ss_dssp EETTEECHHHHTHHHHHHHHHHHHHHHHHHHHTTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCCSSCSSHHHH
T ss_pred CCCCCCccccCcchhhHHHHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHHHhhhhHHHHHHhhhcccCCchHHH
Confidence 9999999999999999999999999999999877542 36788999999999999999998753 34567899
Q ss_pred HHHHHhhhhHHH-HHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHH
Q 020765 159 YMQKTYYKTASL-ISNSCKAIALLAG--QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAP 235 (321)
Q Consensus 159 y~~~~~~KTa~l-~~~~~~~ga~lag--~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp 235 (321)
|++|+.+|||+| |.+||.+|++++| .+++..+.++.||.++|+||||+||++|+++ |||.|+||++||+|||
T Consensus 203 y~~ii~~KTa~l~~~~~~~~g~~~ag~~~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~-----gK~~g~Dl~egK~T~p 277 (368)
T 2q58_A 203 YFSMVEMKTSRYTFYMPVFFGLTLSEIQVSSAQLNLIEAILYKLGEFYQVHNDVSDYLF-----NDSNADDICRFKLTWP 277 (368)
T ss_dssp HHHHHHHHTHHHHTHHHHHHHHHHSCCCCCCSSTTTHHHHHHHHHHHHHHHHHHHHHHS-----CCCSSCTTTSCCCCHH
T ss_pred HHHHHHHHhccccchHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHhhccc-----CCCCCchHhcCCcHHH
Confidence 999999999999 7999999999998 4666778899999999999999999999975 8999999999999999
Q ss_pred HHHHHhhC-hHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHH----H
Q 020765 236 ILFAMEEF-PQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRAL----L 310 (321)
Q Consensus 236 ~l~al~~~-~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L----~ 310 (321)
+++|++.. ++.++.+.+.+.... ..+.+++...+..+.+.++++++.+++.+.++.+|.+. .++.| .
T Consensus 278 ~i~al~~~~~~~r~~L~~~~~~~~--~~vk~l~~~l~~~~~~~ey~~~~~~~~~~~i~~l~~~~------~k~~l~~ll~ 349 (368)
T 2q58_A 278 LQKSFEIADEEMKLKISENYGKNS--SLVKDCYNLLKINEHYLEYQRNALDYLIKLVKDITDDS------LQKVFIHLIH 349 (368)
T ss_dssp HHSSTTTCCHHHHHHHHHHTTTCH--HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCSCHH------HHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHhCCCH--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccchh------HHHHHHHHHH
Confidence 99999984 677777776664332 34455666666777788888899999999999999876 55554 4
Q ss_pred HHHHHHHhcc
Q 020765 311 DLTHRVITRN 320 (321)
Q Consensus 311 ~l~~~~~~R~ 320 (321)
.++++++.|+
T Consensus 350 kI~~~~~~rk 359 (368)
T 2q58_A 350 QISELITNSR 359 (368)
T ss_dssp HHHHHHCC--
T ss_pred HHHHHHHHhh
Confidence 5555666664
No 40
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=100.00 E-value=3.6e-61 Score=440.95 Aligned_cols=254 Identities=26% Similarity=0.344 Sum_probs=214.0
Q ss_pred CCchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh-
Q 020765 4 AEVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV- 82 (321)
Q Consensus 4 ~~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI- 82 (321)
+.+|.+.++++|++..| |||+||.|++++++++|++ ..+.+..+|++|||||+||||||||
T Consensus 22 ~~~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~~~~----------------~~~~~~~~A~aiEliH~aSLIHDDIp 83 (291)
T 3npk_A 22 SFHPFFNEALALMLKAG--GKHFRAQLLLSVVQSNKPE----------------LLNQALDVALALEFIHTYSLIHDDLP 83 (291)
T ss_dssp SSCSSHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCGG----------------GHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred CCcHHHHHHHHHHHhCC--CcchHHHHHHHHHHHhCCC----------------cHHHHHHHHHHHHHHHHHHHHHCCcc
Confidence 46789999999999889 9999999999999999752 1245889999999999999999999
Q ss_pred -cCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCC-C----HHHHHHHHHH--HHHHHhhhHhhhcccCCCCC
Q 020765 83 -LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK-N----TEVVTLLATV--VEHLVTGETMQMTTSSDQRC 154 (321)
Q Consensus 83 -~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~-~----~~~~~~~~~~--~~~~~~Gq~~d~~~~~~~~~ 154 (321)
||+|++|||+||+|++||+++|||+||+|++.||+.+++.. + .++++.++++ +..++.||.+|+.+... .+
T Consensus 84 ~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~lDl~~~~~-~~ 162 (291)
T 3npk_A 84 AMDNADFRRGIPTLHKSYDETTAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDK-RL 162 (291)
T ss_dssp TTTCCSEETTEECHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHSTTTHHHHHHHHHHTTTS-CC
T ss_pred cccCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhHHHHHHHHHHHHhccCC-CC
Confidence 99999999999999999999999999999999999998753 2 2567888888 88999999999988653 68
Q ss_pred CHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcH
Q 020765 155 SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITA 234 (321)
Q Consensus 155 s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tl 234 (321)
++++|..|+++|||+||++||++|++++|.+++..+.++.||.++|+||||+||++|++++++.+||+.+.| +||+||
T Consensus 163 ~~~~y~~i~~~KTg~L~~~a~~~ga~laga~~~~~~~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~~~d--~gK~T~ 240 (291)
T 3npk_A 163 SLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDVTTSQEQSGKPTNND--IHKNSF 240 (291)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------------CCH
T ss_pred CHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHCCccchh--cCcchH
Confidence 999999999999999999999999999999999899999999999999999999999999999999998776 999999
Q ss_pred HHHHHHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHHHHH
Q 020765 235 PILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLDLTH 314 (321)
Q Consensus 235 p~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~l~~ 314 (321)
|+++ +++.+.+.++++.++|.+.|+.++.+ ..+.|++|+.
T Consensus 241 p~l~---------------------------------~l~~a~~~~~~~~~~a~~~l~~~~~~-------~~~~l~~la~ 280 (291)
T 3npk_A 241 VNLL---------------------------------GLEQAIKTKENLLNECEQDLEKLNEK-------LAQMIQNLII 280 (291)
T ss_dssp HHHH---------------------------------CHHHHHHHHHHHHHHHHHHHHTSCHH-------HHHHHHHHHH
T ss_pred HHHH---------------------------------HHHHhHHHHHHHHHHHHHHHHHhchh-------HHHHHHHHHH
Confidence 9999 55677888999999999999998643 2578999998
Q ss_pred HHHh
Q 020765 315 RVIT 318 (321)
Q Consensus 315 ~~~~ 318 (321)
+.++
T Consensus 281 ~~~~ 284 (291)
T 3npk_A 281 QYLE 284 (291)
T ss_dssp HHC-
T ss_pred HHHh
Confidence 8754
No 41
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=100.00 E-value=1.7e-59 Score=430.03 Aligned_cols=245 Identities=23% Similarity=0.275 Sum_probs=219.3
Q ss_pred CchhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 020765 5 EVPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVLD 84 (321)
Q Consensus 5 ~~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI~D 84 (321)
.++.+.++++|++. | |||+||.|++++++++|++. +.+..+|+++||||+||||||||||
T Consensus 34 ~~~~l~~~~~y~~~-g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~avEliH~asLIHDDi~D 93 (289)
T 2azj_A 34 RDWDLVDISSYILK-D--GKRFRGTLNMFFTVALGGDI-----------------KDSYGGALAIEILHSASLALCDIVD 93 (289)
T ss_dssp SCTTHHHHHHHHHS-C--CCCHHHHHHHHHHHHTTCCG-----------------GGGHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHhc-C--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 35679999999999 9 99999999999999998631 1367899999999999999999999
Q ss_pred CCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHHHH
Q 020765 85 DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVAL-ASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKT 163 (321)
Q Consensus 85 ~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l-~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~~~ 163 (321)
+|++|||+||+|++||++.|||+||+|+++||+.+ ++.+ +.+++.+++++..++.||.+|+.+ +++|++|+
T Consensus 94 ~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~a~~~l~~~~~-~~~~~~~~~~~~~~~~GQ~~dl~~-------~~~y~~~i 165 (289)
T 2azj_A 94 LDATRRGDKAAWVVYGNRKVIFITNYLIPTALRIIQTSYG-DDALNTSIELWKDTSVGALRDMYD-------NSDYIRTI 165 (289)
T ss_dssp TCCBSSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHTTTT-------TSCHHHHH
T ss_pred CCCCCCCCccHHHhcChHHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHhh-------HHHHHHHH
Confidence 99999999999999999999999999999999999 8764 579999999999999999999975 57799999
Q ss_pred hhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHHHHhhC
Q 020765 164 YYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEF 243 (321)
Q Consensus 164 ~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~~ 243 (321)
++|||+||++||++|++++ .+++..+.++.||.++|+||||+||++|++++ ||+ |+++||+|||+++ +..
T Consensus 166 ~~KTa~L~~~a~~~ga~la-~~~~~~~~l~~~g~~lG~aFQi~DDilD~~~~----~K~---dl~~gk~Tlp~l~--~~~ 235 (289)
T 2azj_A 166 ELKTGSLFKLSTVLSAYAS-KHYNTKQQMLDVGKYLGIIYQVIDDFVDYKTK----KVE---EIDGSAKQLFKYY--REG 235 (289)
T ss_dssp HHHTHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTS----CTT---TCCTTGGGGHHHH--TTT
T ss_pred HcchHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC----CCh---hhhcCcccHHHHH--HcC
Confidence 9999999999999999999 98888999999999999999999999999996 464 8999999999999 221
Q ss_pred hHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCC-CCCcchHHHHHHHHHHHHHHHhcc
Q 020765 244 PQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPE-NNDEDVTKSRRALLDLTHRVITRN 320 (321)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~-~~~~~~~~~~~~L~~l~~~~~~R~ 320 (321)
. . + +..+.++++|.++|.+.|+.+|. ++ .++.|.++++++++|.
T Consensus 236 g-~--------------~------------~a~~~~a~~~~~~A~~~L~~lp~~~~------~~~~L~~l~~~~~~R~ 280 (289)
T 2azj_A 236 K-L--------------E------------EYVRSVYLEYKQKYDELISNIPFQSK------YLSEIRSLPEFLANGL 280 (289)
T ss_dssp C-H--------------H------------HHHHHHHHHHHHHHHHHHHTSCCCGG------GHHHHHTHHHHHHHHH
T ss_pred C-H--------------H------------HHHHHHHHHHHHHHHHHHHhCCCCcH------HHHHHHHHHHHHHhcc
Confidence 1 0 0 01145899999999999999998 65 7899999999999985
No 42
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=100.00 E-value=3.4e-58 Score=423.00 Aligned_cols=243 Identities=32% Similarity=0.429 Sum_probs=213.8
Q ss_pred chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh--c
Q 020765 6 VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV--L 83 (321)
Q Consensus 6 ~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI--~ 83 (321)
++.+.++++|++..| |||+||.|++++++++|++. +.+..+|+++||||+|||||||| |
T Consensus 37 ~~~l~~~~~y~~~~g--GKrlRp~L~l~~~~~~g~~~-----------------~~~~~~A~avEliH~asLiHDDip~m 97 (293)
T 2j1p_A 37 PLKIHEAMRYSLLAG--GKRVRPVLCIAACELVGGEE-----------------SLAMPAACAVEMIHTMSLIHDDLPCM 97 (293)
T ss_dssp SHHHHHHHHHHHTSC--CCCHHHHHHHHHHHHTTCCH-----------------HHHHHHHHHHHHHHHHHHHHHTSTTT
T ss_pred cHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHCCchhc
Confidence 457999999999989 99999999999999997521 34788999999999999999998 9
Q ss_pred CCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCC-----CHHHHH---HHHHHH--HHHHhhhHhhhcccCC--
Q 020765 84 DDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK-----NTEVVT---LLATVV--EHLVTGETMQMTTSSD-- 151 (321)
Q Consensus 84 D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~-----~~~~~~---~~~~~~--~~~~~Gq~~d~~~~~~-- 151 (321)
|+|++|||+||+|++||++.|||+||+|+++||+.+++.. +..+++ .+++++ ..++.||.+|+.+..+
T Consensus 98 D~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~GQ~~Dl~~~~~~~ 177 (293)
T 2j1p_A 98 DNDDLRRGKPTNHKVYGEDVAVLAGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDL 177 (293)
T ss_dssp TCCSEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHHHHHHHHHHSTTTHHHHHHHTTC---CCH
T ss_pred cCCCCCCCCCchhhhcCHHHHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHhHhHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999999998742 233444 455554 5799999999988654
Q ss_pred CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhcc
Q 020765 152 QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGI 231 (321)
Q Consensus 152 ~~~s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk 231 (321)
..+++++|+.|+++|||+||++||++|++++|++++..+.++.||.++|+||||+||++|+++++ |
T Consensus 178 ~~~~~~~y~~i~~~KTa~L~~~a~~~ga~lag~~~~~~~~l~~~g~~lG~aFQI~DDiLD~~~~~--------------K 243 (293)
T 2j1p_A 178 NNVGLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTKSS--------------K 243 (293)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------C
T ss_pred CCCCHHHHHHHHHcccHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCCc--------------c
Confidence 35788999999999999999999999999999999999999999999999999999999999875 8
Q ss_pred CcHHHHHHHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccCCCCCCcchHHHHHHHHH
Q 020765 232 ITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSRRALLD 311 (321)
Q Consensus 232 ~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~L~~ 311 (321)
.|+|+++ +++++++.+++|.++|++.|+.+| ++ .++.|.+
T Consensus 244 ~T~p~l~---------------------------------gle~a~~~a~~~~~~A~~~L~~l~-~~------~~~~L~~ 283 (293)
T 2j1p_A 244 LTYPKLM---------------------------------GLEKSREFAEKLNTEARDQLLGFD-SD------KVAPLLA 283 (293)
T ss_dssp CCHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHTTTSC-TT------TTHHHHH
T ss_pred ccHHHHH---------------------------------HHHHHHHHHHHHHHHHHHHHHhCC-cH------HHHHHHH
Confidence 9999999 678999999999999999999998 34 4688999
Q ss_pred HHHHHHhccC
Q 020765 312 LTHRVITRNK 321 (321)
Q Consensus 312 l~~~~~~R~~ 321 (321)
|++++++|++
T Consensus 284 l~~~~~~R~~ 293 (293)
T 2j1p_A 284 LANYIANRQN 293 (293)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHHhhcC
Confidence 9999999975
No 43
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=100.00 E-value=1.1e-53 Score=388.74 Aligned_cols=200 Identities=30% Similarity=0.418 Sum_probs=174.2
Q ss_pred CCC-chhHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhh
Q 020765 3 VAE-VPKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD 81 (321)
Q Consensus 3 ~~~-~~~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDD 81 (321)
.+. +|.+.++++|++..| |||+||.|++++++++|+.. ...+.+..+|+++||||+|||||||
T Consensus 26 ~~~~~~~l~~~~~y~~~~g--GKrlRp~Lvll~~~~~g~~~--------------~~~~~~~~~A~aiEliH~aSLIHDD 89 (285)
T 4fp4_A 26 EELEPISLRKAVRHYIETP--GKLLRPLLLLTFTYSIDRRS--------------IMDPRILEAAAIVELLHVVSLLQDD 89 (285)
T ss_dssp TTCSSHHHHHHHHHHHHSC--CCCHHHHHHHHHHHHHCGGG--------------GGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCC--------------CChHHHHHHHHHHHHHHHHHHHHCC
Confidence 444 789999999999989 99999999999999997521 0124578999999999999999999
Q ss_pred hcCCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHH
Q 020765 82 VLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQ 161 (321)
Q Consensus 82 I~D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~ 161 (321)
|||+|++|||+||+|++||++.|||+||+|+++|++.+++.++ ++++.+++++..++.||.+|+.+..+.
T Consensus 90 ImD~s~~RRG~Pt~h~~~G~~~AIlaGD~Ll~~A~~~l~~~~~-~~~~~ls~~~~~~~~GQ~lDl~~~~~~--------- 159 (285)
T 4fp4_A 90 VMDQHDQRRGIKTPRAMYGDGRAIVASDWLIAESIKMAVNLGA-DVVTYLADVAQRLSVGQALDLEGERDK--------- 159 (285)
T ss_dssp HHTTCSBSSSSBCHHHHHCHHHHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHHHTTCHHH---------
T ss_pred CCCCCCCCCCCCcHHHhcChHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHhHHHHHhccccc---------
Confidence 9999999999999999999999999999999999999998754 899999999999999999999886431
Q ss_pred HHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhc
Q 020765 162 KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHG 230 (321)
Q Consensus 162 ~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~eg 230 (321)
|+++|||+||++||++|++++|.+ +..+.++.||.++|+||||+||++|++++++ .||+.|+||+++
T Consensus 160 ~i~~KTg~Lf~~a~~lGa~lag~~-~~~~~l~~~G~~lGlAFQI~DDiLD~~~d~~-~~k~~g~DI~e~ 226 (285)
T 4fp4_A 160 AAEFKTAPLIEAALVMPLVILGRR-ELIETAKKLGTKLGILYQYSDDYSDENVERP-ETKSIANEIGRY 226 (285)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHTCG-GGHHHHHHHHHHHHHHTTCC---------CH-HHHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-ccCccHHHHHHH
Confidence 999999999999999999999999 8889999999999999999999999999876 578899999998
No 44
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=100.00 E-value=7.3e-50 Score=363.86 Aligned_cols=186 Identities=13% Similarity=0.168 Sum_probs=165.3
Q ss_pred CCch-hHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhh
Q 020765 4 AEVP-KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82 (321)
Q Consensus 4 ~~~~-~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI 82 (321)
+..| .|.++++|++..| |||+||.|++++++++|++. +.+..+|++|||||+||||||||
T Consensus 22 ~~~p~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~~-----------------~~~~~~A~aiEliH~aSLIHDDI 82 (274)
T 3kra_B 22 IRPPETVFGPMHHLTFAA--PATAASTLCLAACELVGGDR-----------------SQAMAAAAAIHLVHAAAYVHEHL 82 (274)
T ss_dssp CCSSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHTTCCG-----------------GGGHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHcCC
Confidence 3445 4999999999889 99999999999999998632 23678999999999999999999
Q ss_pred c-CCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCCH-------HHHHH---HHHHH--HHHHhhhHhhhccc
Q 020765 83 L-DDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNT-------EVVTL---LATVV--EHLVTGETMQMTTS 149 (321)
Q Consensus 83 ~-D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~~-------~~~~~---~~~~~--~~~~~Gq~~d~~~~ 149 (321)
+ |++++|||+||+|++||+++|||+||+|+++||+.+++...+ .+++. +++++ ..++.||.+|+.+.
T Consensus 83 ~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~~l~~a~G~~~~~~GQ~lDl~~~ 162 (274)
T 3kra_B 83 PLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFGFELLAGSVDPARTDDPDRILRVIIEISRAGGPEGMISGLHREEEIV 162 (274)
T ss_dssp CCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHTCCTTCTTHHHHHHHHHHHHHHHTSTTTHHHHHHHHTTCC
T ss_pred cccCCccCCCCCCchhhcChHHHHHHHHHHHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHHhHHHHHHhHHHHHhcc
Confidence 8 666789999999999999999999999999999999886542 34444 44444 66899999999987
Q ss_pred CCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhh
Q 020765 150 SDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDV 209 (321)
Q Consensus 150 ~~~~~s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ 209 (321)
.+ .+++++|++|+++|||+||++||++|++++|++++..+.++.||.++|++|||+||.
T Consensus 163 ~~-~~t~~~y~~~i~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 163 DG-NTSLDFIEYVCKKKYGEMHACGAACGAILGGAAEEEIQKLRNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp TT-SSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 65 689999999999999999999999999999999999999999999999999999997
No 45
>3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus}
Probab=100.00 E-value=2.1e-48 Score=354.33 Aligned_cols=183 Identities=12% Similarity=0.156 Sum_probs=159.4
Q ss_pred Cch-hHHHHHHHHHhCCCCCCchHHHHHHHHHHhcCCCCCCCCCCCchhhhhhHhHHHHHHHHHHHHHHHHHHHHHhhhc
Q 020765 5 EVP-KLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDVL 83 (321)
Q Consensus 5 ~~~-~l~~~~~y~~~~g~~GK~~Rp~l~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lA~~vEllh~asLihDDI~ 83 (321)
..| .|.++++|++..| |||+||.||+++++++|++. +.+..+|++|||||+||||||||+
T Consensus 28 ~~p~~l~~~~~y~~~~g--GKrlRP~L~l~~~~~~g~~~-----------------~~~~~~A~aiEliH~aSLIHDDI~ 88 (273)
T 3qkc_B 28 RAPESVFEPMHHLTFAA--PRTSASALCVAACELVGGDR-----------------SDAMAAAAAVHLMHVAAYTHENLP 88 (273)
T ss_dssp CCSSTTHHHHHHHHHHS--CCCHHHHHHHHHHHHTTCCG-----------------GGTHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCcHHHHHHHHHHHhCC--CCcHHHHHHHHHHHHhCCCH-----------------HHHHHHHHHHHHHHHHHHHHcCcc
Confidence 344 5999999999889 99999999999999998632 236889999999999999999999
Q ss_pred CCCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCC------HHHHHHH---HHHH--HHHHhhhHhhhcccCCC
Q 020765 84 DDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN------TEVVTLL---ATVV--EHLVTGETMQMTTSSDQ 152 (321)
Q Consensus 84 D~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~------~~~~~~~---~~~~--~~~~~Gq~~d~~~~~~~ 152 (321)
|.|. |||+||+|++||+++|||+||+|+++||+.+++... ..+++.+ ++++ ..++.||.+|+.+..
T Consensus 89 D~d~-RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~~~~~~~~~~~~~~~~~~l~~a~g~~~~~~GQ~lDl~~~~-- 165 (273)
T 3qkc_B 89 LTDG-PMSKSEIQHKFDPNIELLTGDGIIPFGLELMARSMDPTRNNPDRILRAIIELTRVMGSEGIVEGQYHELGLNQ-- 165 (273)
T ss_dssp BTTB-CSSSSCCCCSSCHHHHHHHHHHHHHHHHHHHHHHSCSSCCCHHHHHHHHHHHHHHHTTTTHHHHHHHHTTCCS--
T ss_pred cCcc-CCCCCCchhhcCHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCC--
Confidence 9999 999999999999999999999999999999987542 3445544 4444 578999999998842
Q ss_pred CCCHHHHHH-HHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhh
Q 020765 153 RCSMDYYMQ-KTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVL 210 (321)
Q Consensus 153 ~~s~~~y~~-~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~l 210 (321)
..++ +|++ |+++|||+||++||++|++++|++++..+.++.||.++|++|||+||+.
T Consensus 166 ~~~~-eyl~~I~~~KTa~L~~~a~~lGailaga~~~~~~~l~~~G~~lGlaFQI~DD~~ 223 (273)
T 3qkc_B 166 LNDL-ELIEYVCKKKEGTLHACGAACGAILGGCDEDKIEKLRRFGLYVGTVQGLLGKNR 223 (273)
T ss_dssp SCCH-HHHHHHHHHTHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCH-HHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3454 5665 6699999999999999999999999999999999999999999999996
No 46
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=96.88 E-value=0.17 Score=45.56 Aligned_cols=132 Identities=11% Similarity=0.004 Sum_probs=81.3
Q ss_pred HHHHHhhhHhhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccC
Q 020765 135 VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTG 214 (321)
Q Consensus 135 ~~~~~~Gq~~d~~~~~~~~~s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~ 214 (321)
+..+..|..+|+... ...|++++..-++.-.|....+.+. +++..+++ ...++.++|.|||+.|=+.|+
T Consensus 106 ~~~li~g~~~Dl~~~--~~~t~~dL~~Y~~~vAg~VG~m~~~---i~g~~~~~----~~~~A~~lG~AlQltNilRDv-- 174 (294)
T 4hd1_A 106 FLRLIEANRRDQRKH--TYDTWEDLRDYCRYSADPVGRLVLG---IFGCLDDE----RARLSDATCTALQVANHMQDI-- 174 (294)
T ss_dssp HHHHHHHHHHHHHCS--BCCSHHHHHHHHHHHTHHHHHHHHH---HTTCCSHH----HHHHHHHHHHHHHHHHHHHTH--
T ss_pred HHHHHHHHHhccccC--CCCCHHHHHHHHHhccchHHHHHHH---HhCCCCHH----HHHHHHHHHHHHHHHHHHHhc--
Confidence 456788988998654 2468888777666555554444333 33444544 345678999999999888886
Q ss_pred CccccCCcchhHhhhccCcHHHHHHHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccC
Q 020765 215 TSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSL 294 (321)
Q Consensus 215 ~~~~~GK~~~~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l 294 (321)
+.|+..|++-+|.-..-+..-...++. ....++ .+.. .+..-...++.++++|...+..+
T Consensus 175 ---------~eD~~~gR~YlP~~~l~~~gv~~~dl~-~~~~~~-~~~~---------~~~~~~~~A~~~~~~a~~~~~~l 234 (294)
T 4hd1_A 175 ---------DRDLALGRIYVPRADLEQFGATLDDIR-ARRATD-GVRR---------CIALEVDRAQALFDEGRRLESLV 234 (294)
T ss_dssp ---------HHHHHTTCBCSCHHHHHTTTCCHHHHH-TTCCCH-HHHH---------HHHHHHHHHHHHHHHHGGGGGSS
T ss_pred ---------hhhhccCceeCCHHHHHHcCCCHHHHh-cCCCCH-HHHH---------HHHHHHHHHHHHHHHHHHHHHhC
Confidence 678889999999765433321112222 222222 2222 12334466777788888888777
Q ss_pred CCC
Q 020765 295 PEN 297 (321)
Q Consensus 295 ~~~ 297 (321)
|..
T Consensus 235 p~~ 237 (294)
T 4hd1_A 235 PPR 237 (294)
T ss_dssp CHH
T ss_pred CHH
Confidence 643
No 47
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=96.49 E-value=0.4 Score=43.05 Aligned_cols=134 Identities=11% Similarity=-0.011 Sum_probs=86.2
Q ss_pred HHHHHhhhHhhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccC
Q 020765 135 VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTG 214 (321)
Q Consensus 135 ~~~~~~Gq~~d~~~~~~~~~s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~ 214 (321)
+..+..|..+|+... ...|.+++..-++.-.|....+.+.+- +..+.+ .....+.++|.|+|+.|=+.|+
T Consensus 110 ~~~li~g~~~Dl~~~--~~~t~~dL~~Yc~~vAg~VG~l~~~l~---g~~~~~---~~~~~A~~lG~AlQltNilRDv-- 179 (293)
T 3acx_A 110 FYNLIDTVYKDQHFT--MFETDAELFGYCYGVAGTVGEVLTPIL---SDHETH---QTYDVARRLGESLQLINILRDV-- 179 (293)
T ss_dssp HHHHHHHHHHHTTCC--CCSSHHHHHHHHHHHTHHHHHHHHHHH---CSSCCH---HHHHHHHHHHHHHHHHHHHHCH--
T ss_pred HHHHHHHHHHHcCCC--CCCCHHHHHHHHHHhhHHHHHHHHHHh---CCCCcH---HHHHHHHHHHHHHHHHHHHHHH--
Confidence 467788888888643 245888888777777666665555432 223312 3456889999999999977775
Q ss_pred CccccCCcchhHhhhccCcHHHHHHHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccC
Q 020765 215 TSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSL 294 (321)
Q Consensus 215 ~~~~~GK~~~~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~~~l~~l 294 (321)
+.|...|++-||.=..-+..-...++.. ...++ .+.. .+......++.++.+|...+..+
T Consensus 180 ---------~eD~~~gR~YLP~d~l~~~gv~~e~l~~-~~~~~-~~~~---------~~~~l~~~A~~~~~~a~~~~~~l 239 (293)
T 3acx_A 180 ---------GEDFENERIYFSKQRLKQYEVDIAEVYQ-NGVNN-HYID---------LWEYYAAIAEKDFRDVMDQIKVF 239 (293)
T ss_dssp ---------HHHHHTTCCCSCHHHHHHHTCCHHHHHH-HCCCH-HHHH---------HHHHHHHHHHHHHHHHHHTGGGS
T ss_pred ---------HHHHhCCcEEeCHHHHHHcCCCHHHhcc-cCCCH-HHHH---------HHHHHHHHHHHHHHHHHHhHHhC
Confidence 6788999999998554333211222222 22222 2222 23455577888889999999888
Q ss_pred CCCC
Q 020765 295 PENN 298 (321)
Q Consensus 295 ~~~~ 298 (321)
|...
T Consensus 240 p~~~ 243 (293)
T 3acx_A 240 SIEA 243 (293)
T ss_dssp CTTH
T ss_pred CHHH
Confidence 8743
No 48
>3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A*
Probab=96.44 E-value=0.13 Score=47.52 Aligned_cols=143 Identities=14% Similarity=0.115 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhhhHhhhcccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhh
Q 020765 129 TLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDD 208 (321)
Q Consensus 129 ~~~~~~~~~~~~Gq~~d~~~~~~~~~s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD 208 (321)
..+.+.+..+..|-..|+.. ...|.+++..-+++-.|....+.+.+-..-...++. .......+.++|.|||+.|=
T Consensus 114 ~~i~~~~~~m~~gm~~dl~~---~~~t~~~L~~Yc~~vAg~VG~l~~~l~~~~~~~~~~-~~~~~~~A~~lG~AlQltNi 189 (343)
T 3vj8_A 114 TVIADICRRMGIGMAEFLDK---HVTSEQEWDKYCHYVAGLVGIGLSRLFSASEFEDPL-VGEDTERANSMGLFLQKTNI 189 (343)
T ss_dssp HHHHHHHHHHHHHHHHGGGC---CCCSHHHHHHHHHHHTHHHHHHHHHHHHHHTSSCHH-HHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccC---CCCCHHHHHHHHHhCcHHHHHHHHHHhCCCCCccch-hhhHHHHHHHHHHHHHHHHH
Confidence 44555566777888888752 356888888877777777766666654433222332 23456788999999999998
Q ss_pred hhhccCCccccCCcchhHhhhccCcHHHHHHHhhChHHHHHHHcccCChhHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Q 020765 209 VLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAA 288 (321)
Q Consensus 209 ~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~al~~~~~~~~~l~~~~~~~~~~~~i~~~i~~~g~~~~~~~~~~~~~~~a~ 288 (321)
+.|+ +.|+..|++-||.-..-+..-...+++ .+..-..+.. .+......++.+..+|.
T Consensus 190 lRDv-----------~eD~~~gR~YlP~e~l~~~g~~~~dl~-----~~~~~~~~~~------~l~~l~~~A~~~~~~a~ 247 (343)
T 3vj8_A 190 IRDY-----------LEDQQGGREFWPQEVWSRYVKKLGDFA-----KPENIDLAVQ------CLNELITNALHHIPDVI 247 (343)
T ss_dssp HHTH-----------HHHHHTTCCCSCHHHHTTTCSSGGGGG-----SGGGHHHHHH------HHHHHHHHHHTTHHHHH
T ss_pred HHHh-----------HHHHhCCCeeCCHHHHHHcCCCHHHHh-----cccCCHHHHH------HHHHHHHHHHHHHHHHH
Confidence 7776 688899999999854332211111111 1111111221 23455567777778888
Q ss_pred HHhccCCCC
Q 020765 289 AAIDSLPEN 297 (321)
Q Consensus 289 ~~l~~l~~~ 297 (321)
..+..+|..
T Consensus 248 ~~~~~L~~~ 256 (343)
T 3vj8_A 248 TYLSRLRNQ 256 (343)
T ss_dssp HHHHTCCCH
T ss_pred HHHHhCCcc
Confidence 888877664
No 49
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=95.63 E-value=0.23 Score=46.36 Aligned_cols=90 Identities=7% Similarity=-0.063 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHHHhhhHhhhcccC-CCCCCHHHHHHHHhhhhHHHHHHH-HHHHHHHhCCCHHHHH--HHHHHHHHH
Q 020765 124 NTEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNS-CKAIALLAGQTAEVAI--LAFDYGKNL 199 (321)
Q Consensus 124 ~~~~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~s~~~y~~~~~~KTa~l~~~~-~~~ga~lag~~~~~~~--~l~~~g~~l 199 (321)
.+.....+.+.+..++.+-..+..|.. ...++.++|+.+-..-+|..+.+. +.++. --..+++..+ .+..+-...
T Consensus 175 ~~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~~~~~l~~~~~-g~~l~~~~~~~p~~~~l~~~~ 253 (382)
T 3kb9_A 175 PATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSS-GCELPDAVRKHPAYRRAALLS 253 (382)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHHHHHHHHHHHH-TCCCCHHHHTSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHHHHHHHHHHHc-CCCCCHHHHhChHHHHHHHHH
Confidence 456677788888899999888887753 336899999998555555443222 22221 1123444332 456677888
Q ss_pred HHHhchhhhhhhccC
Q 020765 200 GLAYQLIDDVLDFTG 214 (321)
Q Consensus 200 G~afQi~DD~ld~~~ 214 (321)
+...-+.||+..|-.
T Consensus 254 ~~i~rL~NDi~S~~k 268 (382)
T 3kb9_A 254 QEFAAWYNDLCSLPK 268 (382)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 888899999999853
No 50
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=93.89 E-value=3.5 Score=37.18 Aligned_cols=112 Identities=10% Similarity=-0.060 Sum_probs=65.6
Q ss_pred HHcCCCHHHHHHHHHHHHHHHhhhHhhhcccCCC-CC-CHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHH--HHHH
Q 020765 119 LASLKNTEVVTLLATVVEHLVTGETMQMTTSSDQ-RC-SMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAI--LAFD 194 (321)
Q Consensus 119 l~~~~~~~~~~~~~~~~~~~~~Gq~~d~~~~~~~-~~-s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~--~l~~ 194 (321)
+.....+.....+.+.+...+.+-..+..|.... .+ |.++|+.+-..-.|..+.+.+..-++--..++...+ .+.+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEYl~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~p~~~~ 206 (337)
T 1ps1_A 127 TCEGMTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQYLAMRRHTIGVQPTVDLAERAGRFEVPHRVFDSAVMSA 206 (337)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTSHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHcccccchhhHHHHHHHHcCCCCCHHHHhChHHHH
Confidence 3333356667778888888888888887775443 57 899999875555544432222111111123443322 4556
Q ss_pred HHHHHHHHhchhhhhhhccCCccccCCcchhHhhhcc-CcHHHHHHHh
Q 020765 195 YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGI-ITAPILFAME 241 (321)
Q Consensus 195 ~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk-~Tlp~l~al~ 241 (321)
+-...+...-+.||+..|-.+ ..+|. .+.+.++.-+
T Consensus 207 l~~~~~~i~rL~NDl~S~~kE-----------~~~G~~~n~V~~~m~~ 243 (337)
T 1ps1_A 207 MLQIAVDVNLLLNDIASLEKE-----------EARGEQNNMVMILRRE 243 (337)
T ss_dssp HHHHHHHHHHHHHHHHTHHHH-----------HHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHH-----------HhcCCcchHHHHHHHH
Confidence 777788888899999998533 23343 4666666543
No 51
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=86.45 E-value=11 Score=35.75 Aligned_cols=90 Identities=10% Similarity=-0.012 Sum_probs=58.4
Q ss_pred CCHHHHHHHHHHHHHHHhhhHhhhcccC-CCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhC--CCHHHHH--HHHHHHH
Q 020765 123 KNTEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLAG--QTAEVAI--LAFDYGK 197 (321)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~s~~~y~~~~~~KTa~l~~~~~~~ga~lag--~~~~~~~--~l~~~g~ 197 (321)
......+.+.+.+..++.+-..+..|.. ...+|.++|+++ +..||....+.+ .....| .+++..+ .+.++-.
T Consensus 252 a~~~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPsleEYl~~-R~~sg~~p~~~l--~e~~~g~~lp~~v~~~p~~~~L~~ 328 (433)
T 3v1v_A 252 ATPSQSDRYRHDMARLHLGYLAEGAWAQTGHVPEVWEYLAM-RQFNNFRPCPTI--TDTVGGYELPADLHARPDMQRVIA 328 (433)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH-HHHSSSTTTGGG--HHHHHTCCCCHHHHTSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH-HHHHhHHHHHHH--HHHHcCCCCCHHHHhCchHHHHHH
Confidence 3556677778888888888888877743 336899999996 445654322211 112222 2444333 4566777
Q ss_pred HHHHHhchhhhhhhccCC
Q 020765 198 NLGLAYQLIDDVLDFTGT 215 (321)
Q Consensus 198 ~lG~afQi~DD~ld~~~~ 215 (321)
..+...-+.||+..|-.+
T Consensus 329 ~~~~i~rL~NDI~Sy~kE 346 (433)
T 3v1v_A 329 LAGNATTIVNDLYSYTKE 346 (433)
T ss_dssp HHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHHHhchHHHHHHH
Confidence 888888899999998543
No 52
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=85.37 E-value=12 Score=36.56 Aligned_cols=102 Identities=10% Similarity=0.059 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHhhhHhhhcccC-CCCCCHHHHHHHHhhhhHHHHHH-HHHHHHHHhC-CCHHHHHHH---HHHHHHHH
Q 020765 127 VVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISN-SCKAIALLAG-QTAEVAILA---FDYGKNLG 200 (321)
Q Consensus 127 ~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~s~~~y~~~~~~KTa~l~~~-~~~~ga~lag-~~~~~~~~l---~~~g~~lG 200 (321)
++..+.+++..++.+-..+..|.. ...||.++|++...--+|..+.+ .+.+++ +. .+.+..+.+ -++-...+
T Consensus 365 ~~~~l~~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~m--g~~lt~e~~e~~~~~p~i~~~~~ 442 (555)
T 3n0f_A 365 ILPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAV--VQNIKKEEIENLQKYHDIISRPS 442 (555)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHH--CSSCCHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhc--CCCCCHHHHHhcccchHHHHHHH
Confidence 556677778888888888888753 34689999999866555543222 121111 22 355555443 35667788
Q ss_pred HHhchhhhhhhccCCccccCCcchhHhhhccC-cHHHHHHHh
Q 020765 201 LAYQLIDDVLDFTGTSASLGKGSLSDIRHGII-TAPILFAME 241 (321)
Q Consensus 201 ~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~-Tlp~l~al~ 241 (321)
...-+.||+..+-.. ..+|.. +...+|.-+
T Consensus 443 ~i~RL~NDi~S~~~E-----------~~rG~vas~V~cYMke 473 (555)
T 3n0f_A 443 HIFRLCNDLASASAE-----------IARGETANSVSCYMRT 473 (555)
T ss_dssp HHHHHHHHHHHHHHH-----------HTTTCCCSHHHHHHHH
T ss_pred HHHHHhccchhhhhh-----------hhcCCcchHHHHHHHH
Confidence 888889999987432 233444 666666443
No 53
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=83.69 E-value=18 Score=35.36 Aligned_cols=88 Identities=11% Similarity=0.067 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHHhhhHhhhcccC-CCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHh-C--CCHHHHHHH---HHHHH
Q 020765 125 TEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLA-G--QTAEVAILA---FDYGK 197 (321)
Q Consensus 125 ~~~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~s~~~y~~~~~~KTa~l~~~~~~~ga~la-g--~~~~~~~~l---~~~g~ 197 (321)
..++..+.+.+..++.+-..+..|.. ...||.++|++...--+|..+... .+.++ | .+.+..+.+ .++-.
T Consensus 365 ~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~---~~~~~mg~~lt~e~~e~~~~~p~i~~ 441 (554)
T 3g4d_A 365 QYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAI---TSFVGMGDIVTPETFKWAASDPKIIQ 441 (554)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHH---HHHHTSCTTSCHHHHHHHHTCCHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehHHHHHH---HHHHhcCCCCCHHHHHhccccHHHHH
Confidence 35777788888999999998888854 346899999998665555542221 11222 2 355655543 36778
Q ss_pred HHHHHhchhhhhhhccCC
Q 020765 198 NLGLAYQLIDDVLDFTGT 215 (321)
Q Consensus 198 ~lG~afQi~DD~ld~~~~ 215 (321)
..+...-+.||+..+-.+
T Consensus 442 ~~~~I~RL~NDI~S~k~E 459 (554)
T 3g4d_A 442 ASTIICRFMDDVAEHKFK 459 (554)
T ss_dssp HHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHhcccchhhhh
Confidence 888999999999998543
No 54
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=82.66 E-value=22 Score=34.62 Aligned_cols=102 Identities=13% Similarity=0.057 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHhhhHhhhcccC-CCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHh-C-CCHHHHHHH---HHHHHH
Q 020765 125 TEVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLISNSCKAIALLA-G-QTAEVAILA---FDYGKN 198 (321)
Q Consensus 125 ~~~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~s~~~y~~~~~~KTa~l~~~~~~~ga~la-g-~~~~~~~~l---~~~g~~ 198 (321)
..++..+.+.+..++.+-..+..|.. ...||.++|++...--+|...-.+.. .++ . .+.+..+.+ .++-..
T Consensus 361 ~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~---f~g~~~lt~e~~e~~~~~p~i~~~ 437 (550)
T 3m00_A 361 SHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTS---YLGMKSATEQDFEWLSKNPKILEA 437 (550)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHH---HHTCTTCCHHHHHHHHTCCHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHH---HHcCCCCcHHHHHhhcccHHHHHH
Confidence 35677788888899999998888854 33689999999866555544222111 222 2 455554442 356777
Q ss_pred HHHHhchhhhhhhccCCccccCCcchhHhhhccC-cHHHHHHH
Q 020765 199 LGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII-TAPILFAM 240 (321)
Q Consensus 199 lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~-Tlp~l~al 240 (321)
.+...-+.||+..+-.+ ..+|.. +...+|.-
T Consensus 438 ~~~I~RL~NDI~S~k~E-----------~~rG~vas~V~cYMk 469 (550)
T 3m00_A 438 SVIICRVIDDTATYEVE-----------KSRGQIATGIECCMR 469 (550)
T ss_dssp HHHHHHHHHHHHSHHHH-----------HHTTCTTSHHHHHHH
T ss_pred HhhhheeeccchhHHHH-----------HhcCCcccHHHHHHH
Confidence 88888999999987432 334554 66666643
No 55
>3aqb_A Component A of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_A*
Probab=78.15 E-value=2.8 Score=32.99 Aligned_cols=43 Identities=16% Similarity=0.090 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhh
Q 020765 104 AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQM 146 (321)
Q Consensus 104 Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~ 146 (321)
-|++||++-+.-+.+|+.......++.+++++..+.+.-..-+
T Consensus 72 iVLaGD~~Sa~fY~lLa~~~~~~~i~~lS~aI~eVNE~K~sl~ 114 (147)
T 3aqb_A 72 FVLSTDVLSALFYKYLSQPFYQHDFLVLTDCVSRINELKSIRA 114 (147)
T ss_dssp HHHHHHHHHHHHHHHTBTTBCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEeehHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 4599999999999999988888899999999988877665544
No 56
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=77.57 E-value=34 Score=33.24 Aligned_cols=102 Identities=12% Similarity=0.072 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHhhhHhhhcccCCC-CCCHHHHHHHHhhhhHHHHHH-HHHHHHHHhC-CCHHHHHHH---HHHHHHHH
Q 020765 127 VVTLLATVVEHLVTGETMQMTTSSDQ-RCSMDYYMQKTYYKTASLISN-SCKAIALLAG-QTAEVAILA---FDYGKNLG 200 (321)
Q Consensus 127 ~~~~~~~~~~~~~~Gq~~d~~~~~~~-~~s~~~y~~~~~~KTa~l~~~-~~~~ga~lag-~~~~~~~~l---~~~g~~lG 200 (321)
++..+.+.+..++.+-..+..|.... .||.++|++.-..-+|...-+ ....+ ++. .+.+..+.+ .++-...+
T Consensus 356 ~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~--~g~~~t~e~~e~~~~~p~i~~~~~ 433 (543)
T 2ong_A 356 VIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFR--VTDSFTKETVDSLYKYHDLVRWSS 433 (543)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHH--HSSCCCHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHH--cCCCCCHHHHHHhcccHHHHHHHH
Confidence 55667777788888888887775443 589999998765544443222 22222 122 345544432 34566667
Q ss_pred HHhchhhhhhhccCCccccCCcchhHhhhccC-cHHHHHHHh
Q 020765 201 LAYQLIDDVLDFTGTSASLGKGSLSDIRHGII-TAPILFAME 241 (321)
Q Consensus 201 ~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~-Tlp~l~al~ 241 (321)
...-+.||+..+-.+ ...|.. +...+|.-+
T Consensus 434 ~i~RL~NDi~S~~~E-----------~~rG~~~n~V~cyMke 464 (543)
T 2ong_A 434 FVLRLADDLGTSVEE-----------VSRGDVPKSLQCYMSD 464 (543)
T ss_dssp HHHHHHHHHHSSHHH-----------HHTSCCCCHHHHHHHH
T ss_pred HHHHHhcccchhhhc-----------cccCCccHHHHHHHHH
Confidence 777789998887432 234444 666666443
No 57
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=73.62 E-value=22 Score=32.22 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcC------------CCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCC-HHHHHH
Q 020765 64 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVTL 130 (321)
Q Consensus 64 ~lA~~vEllh~asLihDDI~D------------~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~-~~~~~~ 130 (321)
.+...-+.|=.|+-|.|||.| .++.|.|++|+-..+|...|--...-+...|...|..++. .+.+..
T Consensus 235 ~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~~~~~~L~~ 314 (324)
T 3uca_A 235 KLEGFGYKLGLAFQIKDDILDVVGNAKDLGKNVHKDQESNKNNYITIFGLEECKKKCVNITEECIEILSSIKGNTEPLKV 314 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC-----------------CHHHHHCHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 344445667788999999976 3567889999999999999998888899999999888753 334444
Q ss_pred HHH
Q 020765 131 LAT 133 (321)
Q Consensus 131 ~~~ 133 (321)
+++
T Consensus 315 la~ 317 (324)
T 3uca_A 315 LTM 317 (324)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 58
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=71.85 E-value=18 Score=32.72 Aligned_cols=60 Identities=17% Similarity=0.145 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcC------------CCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCC
Q 020765 64 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 123 (321)
Q Consensus 64 ~lA~~vEllh~asLihDDI~D------------~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~ 123 (321)
.+...-+.|=.|+-|.|||.| .++.|.|++|+-..+|...|--...-+..+|...|..++
T Consensus 206 ~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~ 277 (317)
T 4f62_A 206 KLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFSDAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFG 277 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC----------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcchHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 344455677788999999977 356788999999999999998888888899988888765
No 59
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=71.19 E-value=14 Score=33.17 Aligned_cols=59 Identities=24% Similarity=0.318 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHhhhcC------------CCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCC
Q 020765 65 IAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 123 (321)
Q Consensus 65 lA~~vEllh~asLihDDI~D------------~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~ 123 (321)
+...-+.|=.++-|.||+.| .++.+.|++|+-..+|...|-....-+..+|...|..++
T Consensus 214 l~~~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~ 284 (302)
T 3p8r_A 214 LDRYAEAVGLAFQVQDDILDIISDTETLGKPQGSDQELNKSTYPALLGLEGAQQKAHTLLQEALLALEAIP 284 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC---------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHhCCCcchHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44445667788899999976 346788999999999999998888889999998888775
No 60
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=70.95 E-value=10 Score=34.00 Aligned_cols=79 Identities=27% Similarity=0.253 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcC------------CCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCC-HHHHHH
Q 020765 64 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVTL 130 (321)
Q Consensus 64 ~lA~~vEllh~asLihDDI~D------------~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~-~~~~~~ 130 (321)
.+...-+.|=.|+-|.|||.| .++.|.|++|+-..+|...|--...-+...|...|..++. .+.+..
T Consensus 207 ~l~~~g~~lGlaFQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~~~~L~~ 286 (304)
T 3lsn_A 207 ALQTYAQAIGLAFQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELRDQALHALRPFDAAAEPLRE 286 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHHHHHHHHTTTSCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHH
Confidence 344445567788899999977 5788999999999999999999889999999988887763 233433
Q ss_pred HHHH-HHHHHhhh
Q 020765 131 LATV-VEHLVTGE 142 (321)
Q Consensus 131 ~~~~-~~~~~~Gq 142 (321)
+++. +.+..+|.
T Consensus 287 l~~~~~~R~~~~~ 299 (304)
T 3lsn_A 287 LARYIVERRSEGH 299 (304)
T ss_dssp HHHHHHC------
T ss_pred HHHHHHHhccccc
Confidence 3333 33444443
No 61
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=67.88 E-value=25 Score=31.80 Aligned_cols=61 Identities=20% Similarity=0.196 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcC------------CCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCC
Q 020765 64 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 124 (321)
Q Consensus 64 ~lA~~vEllh~asLihDDI~D------------~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~ 124 (321)
.+...-+.|=.|+-|.|||.| .++.+.|++|+-..+|...|--...-+...|...|..++.
T Consensus 213 ~l~~~g~~lGlAFQI~DDiLD~~~d~~~~GK~~g~Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~ 285 (324)
T 3ts7_A 213 RLDHYAKCIGLAFQIQDDILDEESDTQTLGKTRGKDRDHNKPNYPALLGLSGAKEKAEEMHEAALESLAGFGP 285 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCC---------------CCCHHHHHCHHHHHHHHHHHHHHHHHTTTTCCG
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 344455677788899999976 3467889999999999999998888889999888887753
No 62
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=67.33 E-value=28 Score=35.38 Aligned_cols=103 Identities=7% Similarity=0.034 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHhhhHhhhcccC-CCCCCHHHHHHHHhhhhHHH-HHHHHHHHHHHhC-CCHHHHHHH---HHHHHHH
Q 020765 126 EVVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASL-ISNSCKAIALLAG-QTAEVAILA---FDYGKNL 199 (321)
Q Consensus 126 ~~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~s~~~y~~~~~~KTa~l-~~~~~~~ga~lag-~~~~~~~~l---~~~g~~l 199 (321)
.++..+.+++..++.+-..+..|.. ...+|.++|++....-+|.. +.+++..+ ++. .+.+..+.. .++-+..
T Consensus 566 ~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~--~G~~lt~e~~e~~~~~~~l~~~~ 643 (764)
T 3p5p_A 566 DMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILL--MGELVKDDVVEKVHYPSNMFELV 643 (764)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHT--SSSCCCGGGHHHHSTTSHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHH--cCCCCcHHHHhhhhhhHHHHHHH
Confidence 3556677778888888888877643 33689999999765555543 22222222 122 344444444 4566777
Q ss_pred HHHhchhhhhhhccCCccccCCcchhHhhhccC-cHHHHHHHh
Q 020765 200 GLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII-TAPILFAME 241 (321)
Q Consensus 200 G~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~-Tlp~l~al~ 241 (321)
+...-+.||+..+-.+ ..+|.. +...+|.-+
T Consensus 644 ~~I~RL~NDi~S~k~E-----------~~rG~~as~V~cYMke 675 (764)
T 3p5p_A 644 SLSWRLTNDTKTYQAE-----------KARGQQASGIACYMKD 675 (764)
T ss_dssp HHHHHHHHHHHHHHHH-----------HTTTCCCSHHHHHHHH
T ss_pred HHHHHhhhcccchHHH-----------HhcCCcchHHHHHHHh
Confidence 8888889999988432 233444 666666443
No 63
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=66.47 E-value=25 Score=34.23 Aligned_cols=101 Identities=16% Similarity=0.031 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhhhHhhhcccCC-CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHh-C--CCHHH-HHH---HHHHHHH
Q 020765 127 VVTLLATVVEHLVTGETMQMTTSSD-QRCSMDYYMQKTYYKTASLISNSCKAIALLA-G--QTAEV-AIL---AFDYGKN 198 (321)
Q Consensus 127 ~~~~~~~~~~~~~~Gq~~d~~~~~~-~~~s~~~y~~~~~~KTa~l~~~~~~~ga~la-g--~~~~~-~~~---l~~~g~~ 198 (321)
.+..+.+++..++.+-..+..|... ..||.++|++.-..-+|...-+ +.+.++ | .+.+. .+. ..++-..
T Consensus 362 ~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~---~~~~~~~g~~lt~e~~~e~~~~~p~i~~~ 438 (549)
T 1n1b_A 362 CLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAII---SPTYFTFANASHDTAVIDSLYQYHDILCL 438 (549)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHH---HHHHTTSTTCCCCHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHH---HHHHHHcCCCCcHHHHHhhhcccHHHHHH
Confidence 4556667777788887777776433 3689999998754444433211 112221 1 23343 333 3456677
Q ss_pred HHHHhchhhhhhhccCCccccCCcchhHhhhccC-cHHHHHHHh
Q 020765 199 LGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGII-TAPILFAME 241 (321)
Q Consensus 199 lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~-Tlp~l~al~ 241 (321)
.+...-+.||+..+-.+. ..|.. +...+|.-+
T Consensus 439 ~~~i~RL~NDi~S~~~E~-----------~rG~v~n~V~cyMke 471 (549)
T 1n1b_A 439 AGIILRLPDDLGTSYFEL-----------ARGDVPKTIQCYMKE 471 (549)
T ss_dssp HHHHHHHHHHHC--------------------CCCCHHHHHHHH
T ss_pred HHHHHHHhcccchhhhhh-----------ccCCccHHHHHHHHH
Confidence 788888899998875432 23443 666676544
No 64
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=66.42 E-value=28 Score=31.59 Aligned_cols=46 Identities=26% Similarity=0.241 Sum_probs=26.1
Q ss_pred hCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHHH
Q 020765 182 AGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFA 239 (321)
Q Consensus 182 ag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~a 239 (321)
.|.+.+....+...-+.+=.++-|.||+.| .+|+|.|++|+-..|-
T Consensus 62 ~g~~~~~~~~~A~aiEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~G 107 (334)
T 3rmg_A 62 YGAVTPATLHAAVSLELLHTASLVHDDVVD------------ESTERRGQLSVNAIFN 107 (334)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHHHHHHHHC---------------------CHHHHHH
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHcCccC------------CCCCcCCCccHHHhcC
Confidence 344444444556667778889999999977 3667888888887764
No 65
>2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1
Probab=65.62 E-value=51 Score=29.25 Aligned_cols=46 Identities=24% Similarity=0.271 Sum_probs=30.8
Q ss_pred HhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHH
Q 020765 181 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 238 (321)
Q Consensus 181 lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 238 (321)
..+.+++....+...-+.+=.+.-|.||+.| .+|+|.|++|+-..|
T Consensus 39 ~~~~~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~ 84 (301)
T 2q80_A 39 WLKVPEDKLQIIIEVTEMLHNASLLIDDIED------------NSKLRRGFPVAHSIY 84 (301)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH------------TCSEETTEECHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHccccC------------CCCCCCCCcchhhcc
Confidence 3355555445566666777788899999977 245667777766554
No 66
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=64.70 E-value=19 Score=32.46 Aligned_cols=71 Identities=13% Similarity=0.094 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcC------------CCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCC-HHHHHH
Q 020765 64 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVTL 130 (321)
Q Consensus 64 ~lA~~vEllh~asLihDDI~D------------~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~-~~~~~~ 130 (321)
.+...-+.|=.|+-|.|||.| .++.|.|++|+-..+|...|--...-+...|...|..++. ...+..
T Consensus 214 ~l~~~g~~lGlaFQI~DDilD~~gd~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~a~~~~~~A~~~L~~l~~~~~~L~~ 293 (313)
T 3lom_A 214 ALRTYGKHIGLVFQMQDDYLDLYAPTQILGKGRSSDQANQKTTFATLFNKQQLEEEIAVHYQIAMDSLRLFGSKAAALIE 293 (313)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC---------------CCCHHHHSCHHHHHHHHHHHHHHHHHTTTTTGGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHhhCCCCcchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHH
Confidence 344445567778899999976 3567899999999999999988888888888888877652 334444
Q ss_pred HHHH
Q 020765 131 LATV 134 (321)
Q Consensus 131 ~~~~ 134 (321)
+++.
T Consensus 294 la~~ 297 (313)
T 3lom_A 294 LTKQ 297 (313)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 67
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=62.62 E-value=30 Score=35.45 Aligned_cols=87 Identities=13% Similarity=0.064 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHhhhHhhhcccC-CCCCCHHHHHHHHhhhhHHHH--HHHHHHHHHHhC-CCHHHHHHHH-----HHHH
Q 020765 127 VVTLLATVVEHLVTGETMQMTTSS-DQRCSMDYYMQKTYYKTASLI--SNSCKAIALLAG-QTAEVAILAF-----DYGK 197 (321)
Q Consensus 127 ~~~~~~~~~~~~~~Gq~~d~~~~~-~~~~s~~~y~~~~~~KTa~l~--~~~~~~ga~lag-~~~~~~~~l~-----~~g~ 197 (321)
++..+.+++..++.+-..+..|.. ...+|.++|++....-+|... .+++..+ ++. .+.+..+... ++-+
T Consensus 626 ~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~--~g~~lt~e~~e~~~~~s~p~l~~ 703 (817)
T 3sdr_A 626 LVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIM--DGQLLSQEALEKVDYPGRRVLTE 703 (817)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTC--TTCCCCHHHHHTTCCTTSCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHH--cCCCCCHHHHhcccccchHHHHH
Confidence 456667777888888888877743 336899999987555444422 2222222 122 3556555554 5677
Q ss_pred HHHHHhchhhhhhhccCC
Q 020765 198 NLGLAYQLIDDVLDFTGT 215 (321)
Q Consensus 198 ~lG~afQi~DD~ld~~~~ 215 (321)
..+...-+.||+..+-.+
T Consensus 704 ~~~~I~RL~NDi~S~k~E 721 (817)
T 3sdr_A 704 LNSLISRLADDTKTYKAE 721 (817)
T ss_dssp HHHHHHHHHHHHHSSCC-
T ss_pred HHHHHHHHhccchHHHHH
Confidence 788888889999988543
No 68
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=62.21 E-value=24 Score=32.06 Aligned_cols=49 Identities=31% Similarity=0.243 Sum_probs=28.7
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHH
Q 020765 178 IALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 238 (321)
Q Consensus 178 ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 238 (321)
++.+.|.+.+....+...-+.+=.++-|.||+.| .+|+|.|++|+-..|
T Consensus 64 ~~~~~g~~~~~~~~~A~aiEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~ 112 (341)
T 3mzv_A 64 AARLVGYGGPFHVHLAATVEFIHTATLLHDDVVD------------ESRQRRGRPTANLLW 112 (341)
T ss_dssp HHHHTTCCCSHHHHHHHHHHHHHHHHHHHHHC------------------CTTSCCHHHHS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHcCccC------------CCCCcCCCccHHHhc
Confidence 3444444444444566666778889999999977 356777777776554
No 69
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=61.79 E-value=35 Score=30.45 Aligned_cols=59 Identities=19% Similarity=0.188 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcCC------------CCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcC
Q 020765 64 CIAEITEMIHVASLLHDDVLDD------------ADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL 122 (321)
Q Consensus 64 ~lA~~vEllh~asLihDDI~D~------------s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~ 122 (321)
.+...-+.|=.|+-|.|||.|- ++.+.|++|+-..+|...|--...-+...|...|..+
T Consensus 210 ~l~~~g~~lGlaFQI~DDilD~~~d~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~ 280 (302)
T 3p8l_A 210 LLTQFAHHYGLAFQIRDDLLDATSTEADLGKKVGRDEALNKSTYPALLGIAGAKDALTHQLAEGSAVLEKI 280 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC-----------------CCHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCHHHhCCChhhHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444556677788999999773 5678889999999998888887788888887777655
No 70
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=57.36 E-value=26 Score=32.06 Aligned_cols=49 Identities=20% Similarity=0.049 Sum_probs=32.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHH
Q 020765 178 IALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 238 (321)
Q Consensus 178 ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 238 (321)
++...|.+.+....+...-+.+=.++-|.||+.|= +|+|.|++|+-..|
T Consensus 65 ~~~~~g~~~~~~~~~A~avEliH~asLiHDDI~D~------------s~~RRG~pt~h~~~ 113 (352)
T 3nf2_A 65 SAEVTGAAPEVGVPGAVAVELVHNFSLLHDDLMDG------------DEQRRHRDTVWKVH 113 (352)
T ss_dssp HHHTTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHT------------CCEETTEECHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC------------CCCCCCCccHHHhc
Confidence 34444555444445566667777889999999872 45667777766555
No 71
>4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis}
Probab=56.90 E-value=40 Score=29.86 Aligned_cols=42 Identities=29% Similarity=0.295 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHH
Q 020765 185 TAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 238 (321)
Q Consensus 185 ~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 238 (321)
+.+....+...-+.+=.+.-|.||+.| .+|+|.|++|+-..|
T Consensus 66 ~~~~~~~~A~aiEliH~aSLIHDDImD------------~s~~RRG~Pt~h~~~ 107 (285)
T 4fp4_A 66 MDPRILEAAAIVELLHVVSLLQDDVMD------------QHDQRRGIKTPRAMY 107 (285)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHHT------------TCSBSSSSBCHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHCCCCC------------CCCCCCCCCcHHHhc
Confidence 334344556666777889999999976 245667777776655
No 72
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=56.33 E-value=22 Score=31.69 Aligned_cols=66 Identities=21% Similarity=0.197 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHhhhcC------------CCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHH
Q 020765 68 ITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN-TEVVTLLAT 133 (321)
Q Consensus 68 ~vEllh~asLihDDI~D------------~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~~-~~~~~~~~~ 133 (321)
.-+.|=.|+-|.|||.| .++.|.|++|+-..+|...|--...-++..|...|..++. ...+..+++
T Consensus 204 ~g~~lG~aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~~~A~~~L~~~~~~~~~L~~l~~ 282 (297)
T 3m0g_A 204 YATALGLAFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLVAEAEAALAPYGEAASTLRACAR 282 (297)
T ss_dssp HHHHHHHHHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHHHHHHHHTGGGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34566678889999987 3467889999999999999998888899999888877652 333443433
No 73
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=56.16 E-value=29 Score=30.96 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHhhhcC------------CCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCC
Q 020765 65 IAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 123 (321)
Q Consensus 65 lA~~vEllh~asLihDDI~D------------~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~ 123 (321)
+...-+.+=.++-|.|||.| .++.+.|++|+-..+|...|.-...-+..+|...|..++
T Consensus 203 l~~~g~~lG~aFQI~DDilD~~~d~~~~GK~~g~Dl~~gK~T~p~l~al~~a~~~a~~~~~~A~~~L~~l~ 273 (301)
T 1rtr_A 203 LESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVSLLGKDGAEDKLTYHRDAAVDELTQID 273 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44445566778899999987 567888999999999988888888888888888888764
No 74
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=54.33 E-value=43 Score=29.97 Aligned_cols=58 Identities=21% Similarity=0.123 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHhhhcC------------CCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcC
Q 020765 65 IAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASL 122 (321)
Q Consensus 65 lA~~vEllh~asLihDDI~D------------~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~ 122 (321)
+...-+.|=.|+-|.|||.| .++.+.|++|+-..+|...|--.-.-++..|...+..+
T Consensus 210 l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~al~~a~~~~~~~~~~a~~~l~~~ 279 (309)
T 3pde_A 210 YLQFADAFGLAFQIYDDILDVVSSPAEMGKATQKDADEAKNTYPGKLGLIGANQALIDTIHSGQAALQGL 279 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC-----------CTTTSSSHHHHHCHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 44445567778899999976 46788999999999999888877788888887777763
No 75
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=53.37 E-value=35 Score=30.91 Aligned_cols=60 Identities=28% Similarity=0.267 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHhhhcC------------CCCCCCCcCchhhhcChhHHHHHHHHHHHHHHHHHHcCC
Q 020765 64 CIAEITEMIHVASLLHDDVLD------------DADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLK 123 (321)
Q Consensus 64 ~lA~~vEllh~asLihDDI~D------------~s~~RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~~~ 123 (321)
.+...-+.+=.++-|.|||.| .++.+.|++|+-..+|...|....+-+..+|...|..++
T Consensus 246 ~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~Dl~egK~T~p~l~~le~a~~~a~~~~~~A~~~L~~l~ 317 (335)
T 2h8o_A 246 RLRLFGEKIGLSFQLADDLLDLTADAATMGKATGKDAARGKGTLVALRGEAWAREKLQEQVAEASELLAPYG 317 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-----------------CCCHHHHHCHHHHHHHHHHHHHHHHHHTGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHhCCCcchHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 344445567778899999976 356788899999999988888888888888887777654
No 76
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=52.48 E-value=44 Score=34.03 Aligned_cols=102 Identities=16% Similarity=0.121 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhhhHhhhcccCC-CCCCHHHHHHHHhhhhHHHH-HHHHHHHHHHhC-CCHHHHHHH---HHHHHHHH
Q 020765 127 VVTLLATVVEHLVTGETMQMTTSSD-QRCSMDYYMQKTYYKTASLI-SNSCKAIALLAG-QTAEVAILA---FDYGKNLG 200 (321)
Q Consensus 127 ~~~~~~~~~~~~~~Gq~~d~~~~~~-~~~s~~~y~~~~~~KTa~l~-~~~~~~ga~lag-~~~~~~~~l---~~~g~~lG 200 (321)
++..+.+++..++.+-..+..|... ..+|.++|++...--+|... ...+..+. +. .+.+..+.. .++-+..+
T Consensus 598 ~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~--G~~lt~e~~e~~~~~~~l~~~~~ 675 (785)
T 3s9v_A 598 VLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFT--GEVLTDEVLSKIDRESRFLQLMG 675 (785)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCS--SSCCCHHHHTTTSTTSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHc--CCCCCHHHHhcccccHHHHHHHH
Confidence 4566667778888888888776433 36899999987555444432 22221111 11 344444433 35566777
Q ss_pred HHhchhhhhhhccCCccccCCcchhHhhhccC-cHHHHHHHh
Q 020765 201 LAYQLIDDVLDFTGTSASLGKGSLSDIRHGII-TAPILFAME 241 (321)
Q Consensus 201 ~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~-Tlp~l~al~ 241 (321)
...-+.||+..+-.+ ..+|.. +...+|.-+
T Consensus 676 ~I~RL~NDi~S~k~E-----------~~rG~~as~V~cYMke 706 (785)
T 3s9v_A 676 LTGRLVNDTKTYQAE-----------RGQGEVASAIQCYMKD 706 (785)
T ss_dssp HHHHHHHHHHHHHHH-----------HHHSCCCSHHHHHHHH
T ss_pred HHHHHhcccchhhHH-----------HhcCCcchHHHHHHHh
Confidence 778889999987432 334544 666666544
No 77
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=51.33 E-value=78 Score=27.85 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=31.2
Q ss_pred HhCCCHHHHHHHHHHHHHHHHHhchhhhh--hhccCCccccCCcchhHhhhccCcHHHHH
Q 020765 181 LAGQTAEVAILAFDYGKNLGLAYQLIDDV--LDFTGTSASLGKGSLSDIRHGIITAPILF 238 (321)
Q Consensus 181 lag~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 238 (321)
..|.+++..-.+...-+.+=.+.-|.||+ .| .+|+|.|++|+-..|
T Consensus 60 ~~g~~~~~~~~~A~avEliH~asLIHDDIP~~D------------~s~~RRG~pt~h~~~ 107 (284)
T 2ftz_A 60 DLGVEEEXLLDVAVAVELFHTASLIHDDLPPID------------NADFRRGXPSCHRTY 107 (284)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHHHSTTTT------------CCSEETTEECHHHHH
T ss_pred HhCcCHHHHHHHHHHHHHHHHHHHHhCCchhcC------------CCCCCCCCccHHhhc
Confidence 33555554445666666777788899999 87 245677777776665
No 78
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=50.31 E-value=52 Score=32.16 Aligned_cols=87 Identities=15% Similarity=0.081 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHhhhHhhhcccCCC-CCCHHHHHHHHhhhhHHHHH-HHHHHHHHHhC-CCHHHHHHH---HHHHHHHH
Q 020765 127 VVTLLATVVEHLVTGETMQMTTSSDQ-RCSMDYYMQKTYYKTASLIS-NSCKAIALLAG-QTAEVAILA---FDYGKNLG 200 (321)
Q Consensus 127 ~~~~~~~~~~~~~~Gq~~d~~~~~~~-~~s~~~y~~~~~~KTa~l~~-~~~~~ga~lag-~~~~~~~~l---~~~g~~lG 200 (321)
++..+.+++..++.+-..+..|.... .||.++|++.-..-+|...- .....+ ++. .+.+..+.+ .++-...+
T Consensus 383 ~~~~l~~~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~--~g~~lt~e~~e~l~~~p~i~~~~~ 460 (569)
T 2j5c_A 383 STPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFR--LTDSIEEEAAESMHKYHDIVRASC 460 (569)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHH--SCSSCCHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHH--cCCCCCHHHHHHhhccHHHHHHHH
Confidence 55667777788888888887775433 58999999875544443321 111111 122 344444332 34566667
Q ss_pred HHhchhhhhhhccCC
Q 020765 201 LAYQLIDDVLDFTGT 215 (321)
Q Consensus 201 ~afQi~DD~ld~~~~ 215 (321)
...-+.||+..+-.+
T Consensus 461 ~i~RL~NDI~S~~~E 475 (569)
T 2j5c_A 461 TILRLADDMGTSLDE 475 (569)
T ss_dssp HHHHHHHHHHC----
T ss_pred HHHHHhcccchhhhh
Confidence 777789999888543
No 79
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=47.94 E-value=56 Score=29.52 Aligned_cols=43 Identities=23% Similarity=0.203 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHH
Q 020765 184 QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 238 (321)
Q Consensus 184 ~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 238 (321)
.+.+....+...-+.+=.++=|.||+.| .+|+|.|++|+-..|
T Consensus 73 ~~~~~~~~~A~aiEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~ 115 (334)
T 3pko_A 73 ATPAQLQAGAAAIEILHVGTLIHDDVID------------DSPTRRGVRTIQMTY 115 (334)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHH------------TCSEETTEECHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCccCC------------CCCCcCCCccHHHHc
Confidence 3666555666667778889999999977 245677777776555
No 80
>3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B*
Probab=47.16 E-value=46 Score=29.86 Aligned_cols=48 Identities=25% Similarity=0.254 Sum_probs=29.1
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHH
Q 020765 179 ALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 238 (321)
Q Consensus 179 a~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 238 (321)
+.+.|.+.+..-.+...-+.+=.+.-|.||+.| .+|+|.|++|+-..|
T Consensus 56 ~~~~g~~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~ 103 (325)
T 3aqb_B 56 GFLNDTQKDDLIRTAVSLELVHMASLVHDDYID------------NSDMRRGNTSVHIAF 103 (325)
T ss_dssp HTTSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH------------TCCEETTEECHHHHT
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHHHhCcccc------------CCCCCCCCCCccccc
Confidence 333344433334455566667778899999977 244566766665544
No 81
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=46.84 E-value=1.7e+02 Score=26.73 Aligned_cols=150 Identities=12% Similarity=0.015 Sum_probs=80.2
Q ss_pred HHHHHHHHHhhhcCCCCCCCCcCchhhhc--ChhH--HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhhHhhh
Q 020765 71 MIHVASLLHDDVLDDADTRRGIGSLNFVM--GNKL--AVLAGDFLLSRACVALASLKNTEVVTLLATVVEHLVTGETMQM 146 (321)
Q Consensus 71 llh~asLihDDI~D~s~~RRG~pt~~~~~--G~~~--Ail~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~Gq~~d~ 146 (321)
...++..+.||+.|++.. ....++..+ |... .++. .+...+.-+.+.-.+.....+.+.+.+...|...+.
T Consensus 91 d~~~~~F~lDD~~d~~~~--~l~~~~~~ll~G~~~~~Pl~~---al~dl~~rl~~~~~p~~~~rf~~s~~~~~~a~~~Ea 165 (374)
T 1yyq_A 91 IHYTYTLVLDDSKDDPYP--TMVNYFDDLQAGREQAHPWWA---LVNEHFPNVLRHFGPFCSLNLIRSTLDFFEGCWIEQ 165 (374)
T ss_dssp HHHHHHHHHTTCCSCSHH--HHTTHHHHHHHTCCCSSHHHH---HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcccccCcHH--HHHHHHHHHhcCCCCCChHHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 677778889999987531 112222221 1111 1111 122222333344456666777777788888887775
Q ss_pred cccCCCCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhC-CC------HHHHHHHHHHHHHHHHHhchhhhhhhccCCcccc
Q 020765 147 TTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAG-QT------AEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASL 219 (321)
Q Consensus 147 ~~~~~~~~s~~~y~~~~~~KTa~l~~~~~~~ga~lag-~~------~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~ 219 (321)
.+ ....++..+|..+.+.+||.. -++ .+.++.. .. ++....+..+...+ =..||++.|.......
T Consensus 166 ~n-~~~~p~~~~Y~~~rR~~sG~~--E~~-~~~~~P~~~~~e~~~~~~~~~~i~am~~~i----~~~NDIlSf~KE~~~~ 237 (374)
T 1yyq_A 166 YN-FGGFPGSHDYPQFLRRMNGLG--HCV-GASLWPKEQFNERSLFLEITSAIAQMENWM----VWVNDLMSFYKEFDDE 237 (374)
T ss_dssp TC-CCCCTTCTTHHHHHHHHHHCH--HHH-HHTTCCTTTCCTTTTHHHHHHHHHHHHHHH----HHHHHHHHHHHHTTCS
T ss_pred hc-cCCCCCHHHHHHHHHhhccHH--HHH-HHhhccccccchhhcchhHHHHHHHHHHHH----Hhhhhhhccchhhhcc
Confidence 54 444567888999889999973 111 1111211 11 23344444444433 3468888886442111
Q ss_pred CCcchhHhhhccCcHHHHHHHhh
Q 020765 220 GKGSLSDIRHGIITAPILFAMEE 242 (321)
Q Consensus 220 GK~~~~Dl~egk~Tlp~l~al~~ 242 (321)
| ...+++.+++..+
T Consensus 238 G---------d~~NlV~vl~~~~ 251 (374)
T 1yyq_A 238 R---------DQISLVKNYVVSD 251 (374)
T ss_dssp S---------CCCCHHHHHHHHH
T ss_pred C---------CccchhhhehhcC
Confidence 1 2357777776654
No 82
>1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A
Probab=46.72 E-value=57 Score=28.94 Aligned_cols=38 Identities=32% Similarity=0.337 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHH
Q 020765 189 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 238 (321)
Q Consensus 189 ~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 238 (321)
...+...-+.+=.+.=|.||+.| .+|+|.|++|+-..|
T Consensus 63 ~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~ 100 (299)
T 1v4e_A 63 AISSLAALELVHLASLLHDDVID------------GARFRRGKETINFMY 100 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------------TCSEETTEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCC------------CCCCCCCCCchhhhc
Confidence 33455556667778889999977 245677777776655
No 83
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=45.36 E-value=1.2e+02 Score=26.78 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHhhhcC------CCCCCCCcCchhhhcC--------hhHHHHHHHHHHHHHHHHHHcCCC
Q 020765 65 IAEITEMIHVASLLHDDVLD------DADTRRGIGSLNFVMG--------NKLAVLAGDFLLSRACVALASLKN 124 (321)
Q Consensus 65 lA~~vEllh~asLihDDI~D------~s~~RRG~pt~~~~~G--------~~~Ail~Gd~l~~~a~~~l~~~~~ 124 (321)
+...-+.+=.|+-|.|||.| +.+.+.|++|+-..|+ ...|.....-+..+|...|..++.
T Consensus 192 l~~~g~~lGlaFQI~DDilD~~~~~~gkd~~~gk~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~~lp~ 265 (295)
T 3ipi_A 192 FSHFGNALGTAYQIVDDILEFLEVVEGKESKFTSETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLETFRE 265 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccCCCcccCcccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 44445567778899999977 3566788888888887 666666677777778777777654
No 84
>2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ...
Probab=44.68 E-value=1.1e+02 Score=27.69 Aligned_cols=46 Identities=22% Similarity=0.279 Sum_probs=29.6
Q ss_pred HhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHH
Q 020765 181 LAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 238 (321)
Q Consensus 181 lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 238 (321)
..|.+.+....+...-+.+=.+.=|.||+.| .+|+|.|++|+-..|
T Consensus 54 ~~~~~~~~~~~~A~avEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~ 99 (340)
T 2e8v_A 54 VMNLPKDQLAIVSQIVELLHNSSLLIDDIED------------NAPLRRGQTTSHLIF 99 (340)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHT------------TCSEETTEECHHHHT
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHhCcccc------------CCCCCCCCcchhhcc
Confidence 3355555444555666667778889999976 245666777765444
No 85
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=43.58 E-value=1.6e+02 Score=25.35 Aligned_cols=64 Identities=6% Similarity=0.057 Sum_probs=43.6
Q ss_pred CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCC
Q 020765 152 QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGT 215 (321)
Q Consensus 152 ~~~s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~ 215 (321)
..+|.++|+.+-..-+|..+...+..-++=-..+++..+.+.++-...+...-+.||+..|-.+
T Consensus 150 ~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~l~NDl~S~~kE 213 (300)
T 1di1_A 150 SIHELGHYLEYREKDVGKALLSALMRFSMGLRLSADELQDMKALEANCAKQLSVVNDIYSYDKE 213 (300)
T ss_dssp CCCSHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHTTHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHhhhccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 3689999999765555544333222111212346777777888889999999999999999654
No 86
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=41.18 E-value=1.3e+02 Score=26.90 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcCC--CCC--------CCCcCchhhhcChhHHHHHHHHHHHHHHHHHHc
Q 020765 64 CIAEITEMIHVASLLHDDVLDD--ADT--------RRGIGSLNFVMGNKLAVLAGDFLLSRACVALAS 121 (321)
Q Consensus 64 ~lA~~vEllh~asLihDDI~D~--s~~--------RRG~pt~~~~~G~~~Ail~Gd~l~~~a~~~l~~ 121 (321)
.+...-+.|=.|+-|.|||.|- ++. +.|++|+-..+|...|--.-.-++..|...|..
T Consensus 214 ~l~~~g~~lGlaFQI~DDiLD~~gd~~~~GK~~g~~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~ 281 (311)
T 3llw_A 214 WLQAFGLKMGLCFQVLDDIIDVTQDEEESGKTTHLDSAKNSFVNLLGLERANNYAQTLKTEVLNDLDA 281 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC-------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCChHHHCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3444556677788999999763 111 778899999999999888888888889888887
No 87
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=41.13 E-value=63 Score=29.49 Aligned_cols=38 Identities=26% Similarity=0.310 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHH
Q 020765 189 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 238 (321)
Q Consensus 189 ~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 238 (321)
...+...-+.+=.++-|.||+.| .+|+|.|++|+-..|
T Consensus 67 ~~~~A~aiEliH~asLiHDDI~D------------~s~~RRG~pt~h~~~ 104 (358)
T 4dhd_A 67 ALPAAAIVELIHNYSLIYDDIID------------RGDVRRGLPTVRKAF 104 (358)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHT------------TCCEETTEECHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCcccc------------CCCCcCCCccHHHhc
Confidence 33455566777788999999977 245677777776665
No 88
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=39.61 E-value=78 Score=28.55 Aligned_cols=44 Identities=20% Similarity=0.188 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHH
Q 020765 183 GQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 238 (321)
Q Consensus 183 g~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 238 (321)
|.+++....+...-+.+=.++-|.||+.| .+|+|.|++|+-..|
T Consensus 62 g~~~~~~~~~A~avEliH~asLiHDDi~D------------~s~~RRG~pt~h~~~ 105 (342)
T 1wy0_A 62 GGDPLRAIYPAVAIELIHNYSLVHDDIMD------------MDETRRGKPTVHRIW 105 (342)
T ss_dssp TSCGGGGHHHHHHHHHHHHHHHHHHHHHH------------TCCCSTTSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCccc------------CCCCCCCCCcccccc
Confidence 44433334455566667778899999987 245666777766555
No 89
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=37.99 E-value=1.1e+02 Score=27.34 Aligned_cols=49 Identities=24% Similarity=0.097 Sum_probs=31.2
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHH
Q 020765 178 IALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 238 (321)
Q Consensus 178 ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 238 (321)
++...|.+.+..-.+...-+.+=.++=|.||+.| .+|+|.|++|+-..|
T Consensus 50 ~~~~~~~~~~~~~~~A~avEliH~asLihDDi~D------------~s~~RRG~pt~h~~~ 98 (330)
T 1wmw_A 50 SALAHGAPLEAGLEAATALELFQNWVLVHDDIED------------GSEERRGRPALHRLH 98 (330)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH------------TCCEETTEECHHHHS
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHccccc------------CCCCCCCCCcccccc
Confidence 3344455555444566666777788999999977 244666777665443
No 90
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=37.09 E-value=38 Score=30.83 Aligned_cols=34 Identities=29% Similarity=0.151 Sum_probs=21.6
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhh
Q 020765 178 IALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLD 211 (321)
Q Consensus 178 ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld 211 (321)
++.+.|.+.+....+...-+.+=.++-|.||+.|
T Consensus 76 ~~~~~g~~~~~~~~~A~aiEliH~asLiHDDi~D 109 (345)
T 3oyr_A 76 AARLAGADNDHFQKLAAAVEFIHTATLLHDDVVD 109 (345)
T ss_dssp HHHHTTCCSSTHHHHHHHHHHHHHHHHHTTTTC-
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 3444444444344556666777889999999977
No 91
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=36.74 E-value=65 Score=29.47 Aligned_cols=49 Identities=24% Similarity=0.199 Sum_probs=24.4
Q ss_pred HHHHhC-CCHHHHHHHHHHHHHHHHHhchhhhhhhccCCccccCCcchhHhhhccCcHHHHH
Q 020765 178 IALLAG-QTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILF 238 (321)
Q Consensus 178 ga~lag-~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 238 (321)
++.+.+ .+.+....+...-+.+=.+.-|.||+.| .+|+|.|++|+-..|
T Consensus 85 ~~~~~~~~~~~~~~~~A~avEliH~asLIHDDImD------------~s~~RRG~pt~h~~~ 134 (360)
T 3lmd_A 85 ASEFGEKPLSENVIKAAVVVEITHLATLYHDDVMD------------EASMRRGVPSANARW 134 (360)
T ss_dssp HHTTSSSTTCHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CHHH
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHHHHHhCCCcC------------CCCCCCCCCcHHhhc
Confidence 334444 3444344455566777788999999977 256777887776665
No 92
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=31.16 E-value=2.6e+02 Score=24.23 Aligned_cols=64 Identities=5% Similarity=0.054 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHhhhhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhchhhhhhhccCC
Q 020765 152 QRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGT 215 (321)
Q Consensus 152 ~~~s~~~y~~~~~~KTa~l~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~ld~~~~ 215 (321)
..+|.++|+.+-..-+|..+......-++=-..+++..+...++-...+...-+.||+..|-.+
T Consensus 164 ~~Ps~eeYl~~r~~s~g~~~~~~~~~~~~g~~l~~e~~~~~~~l~~~~~~~~~L~NDl~S~~kE 227 (320)
T 3bny_A 164 RPMGLGGYLEYRERDVGKELLAALMRFSMGLKLSPSELQRVREIDANCSKHLSVVNDIYSYEKE 227 (320)
T ss_dssp CCCCHHHHHHHHHTCHHHHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhhhcccHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccchhHHH
Confidence 3689999998866666654333222111112246777677888889999999999999999543
No 93
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=30.28 E-value=1.8e+02 Score=25.51 Aligned_cols=49 Identities=18% Similarity=0.215 Sum_probs=32.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhchhhhh--hhccCCccccCCcchhHhhhccCcHHHHH
Q 020765 178 IALLAGQTAEVAILAFDYGKNLGLAYQLIDDV--LDFTGTSASLGKGSLSDIRHGIITAPILF 238 (321)
Q Consensus 178 ga~lag~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 238 (321)
++...|.+.+....+...-+.+=.+.=|.||+ .|= +|+|.|++|+-..|
T Consensus 55 ~~~~~g~~~~~~~~~A~avEliH~asLiHDDiP~~D~------------s~~RRG~pt~h~~~ 105 (299)
T 1rqj_A 55 TGHMFGVSTNTLDAPAAAVECIHAYSLIHDDLPAMDD------------DDLRRGLPTCHVKF 105 (299)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTTC------------CCEETTEECHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhHHHhCCChhhcC------------CCCCCCCCChhhhc
Confidence 33444556554445555666677788899999 872 45677777776655
No 94
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=26.97 E-value=2.4e+02 Score=24.75 Aligned_cols=41 Identities=22% Similarity=0.137 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHhchhhhh--hhccCCccccCCcchhHhhhccCcHHHHH
Q 020765 186 AEVAILAFDYGKNLGLAYQLIDDV--LDFTGTSASLGKGSLSDIRHGIITAPILF 238 (321)
Q Consensus 186 ~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 238 (321)
.+....+...-+.+=.++-|.||+ .| .+|+|.|++|+-..|
T Consensus 59 ~~~~~~~A~aiEliH~aSLIHDDIp~mD------------~s~~RRG~pt~h~~~ 101 (291)
T 3npk_A 59 LNQALDVALALEFIHTYSLIHDDLPAMD------------NADFRRGIPTLHKSY 101 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCccccc------------CCCCCCCCCchhhhc
Confidence 344445566667777899999999 66 245677777776554
No 95
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=25.96 E-value=3.2e+02 Score=23.87 Aligned_cols=46 Identities=24% Similarity=0.276 Sum_probs=30.3
Q ss_pred HhCCCHHHHHHHHHHHHHHHHHhchhhhh--hhccCCccccCCcchhHhhhccCcHHHHH
Q 020765 181 LAGQTAEVAILAFDYGKNLGLAYQLIDDV--LDFTGTSASLGKGSLSDIRHGIITAPILF 238 (321)
Q Consensus 181 lag~~~~~~~~l~~~g~~lG~afQi~DD~--ld~~~~~~~~GK~~~~Dl~egk~Tlp~l~ 238 (321)
+.|.+++..-.+...-+.+=.+.-|.||+ .| .+|+|.|++|+-..|
T Consensus 66 ~~g~~~~~~~~~A~avEliH~asLiHDDip~mD------------~s~~RRG~pt~h~~~ 113 (293)
T 2j1p_A 66 LVGGEESLAMPAACAVEMIHTMSLIHDDLPCMD------------NDDLRRGKPTNHKVY 113 (293)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHHHHHHTSTTTT------------CCSEETTEECHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHCCchhcc------------CCCCCCCCCchhhhc
Confidence 34555554444555556667788899998 66 245777888877666
No 96
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=22.14 E-value=3.9e+02 Score=23.25 Aligned_cols=59 Identities=8% Similarity=-0.016 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHhhhcCC-----CCCCCCcCchhhhc---ChhHHH-HHHHHHHHHHHHHHHcCC
Q 020765 65 IAEITEMIHVASLLHDDVLDD-----ADTRRGIGSLNFVM---GNKLAV-LAGDFLLSRACVALASLK 123 (321)
Q Consensus 65 lA~~vEllh~asLihDDI~D~-----s~~RRG~pt~~~~~---G~~~Ai-l~Gd~l~~~a~~~l~~~~ 123 (321)
+...-+.+=.++-|.|||.|- ++.+-|+.|+-..| |...++ ...+-...+|...|..++
T Consensus 193 l~~~g~~lG~aFQi~DDilD~~~~~K~dl~~gk~Tlp~l~~~~g~~~a~~~~a~~~~~~A~~~L~~lp 260 (289)
T 2azj_A 193 MLDVGKYLGIIYQVIDDFVDYKTKKVEEIDGSAKQLFKYYREGKLEEYVRSVYLEYKQKYDELISNIP 260 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCTTTCCTTGGGGHHHHTTTCHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCChhhhcCcccHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334445667788899999772 34566777776666 665552 234444555666666554
No 97
>1v54_K IHQ, cytochrome C oxidase polypeptide VIIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.5.1 PDB: 1oco_K* 1occ_K* 1ocz_K* 1ocr_K* 1v55_K* 2dyr_K* 2dys_K* 2eij_K* 2eik_K* 2eil_K* 2eim_K* 2ein_K* 2occ_K* 2ybb_V* 2zxw_K* 3abk_K* 3abl_K* 3abm_K* 3ag1_K* 3ag2_K* ...
Probab=20.62 E-value=56 Score=21.16 Aligned_cols=24 Identities=29% Similarity=0.260 Sum_probs=14.7
Q ss_pred CCcCchhhhcChhHHHHHHHHHHHHH
Q 020765 90 RGIGSLNFVMGNKLAVLAGDFLLSRA 115 (321)
Q Consensus 90 RG~pt~~~~~G~~~Ail~Gd~l~~~a 115 (321)
...|..|.+||+ +|++|-..+..+
T Consensus 4 k~~p~FHdKYGn--~~L~~Ga~FC~a 27 (56)
T 1v54_K 4 KRAPDFHDKYGN--AVLASGATFCVA 27 (56)
T ss_dssp --CCCHHHHHHH--HHHHHHHHHHHH
T ss_pred ccCcchhhhcCc--eeeecchhhhHh
Confidence 456889999987 455555444433
Done!