RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 020765
(321 letters)
>d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 291
Score = 117 bits (294), Expect = 1e-31
Identities = 60/312 (19%), Positives = 110/312 (35%), Gaps = 33/312 (10%)
Query: 9 LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 68
L +Y ++ GK+ R + L V + Q I E+
Sbjct: 7 LLEPYKYLLQLP--GKQVRTKLSQAFNHWLKVP-----------------EDKLQIIIEV 47
Query: 69 TEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVV 128
TEM+H ASLL DD+ D++ RRG + + G + + +++ + +L + + V
Sbjct: 48 TEMLHNASLLIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAV 107
Query: 129 TLLATV-VEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAE 187
L +E + + + Y KT L + + L + +
Sbjct: 108 KLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDYKED 167
Query: 188 VAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAME---EFP 244
+ LGL +Q+ DD + S K D+ G + P + A+ E
Sbjct: 168 L----KPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPEST 223
Query: 245 QLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTK 304
Q++ ++ Q E+ + YL + TR + A ID+ N
Sbjct: 224 QVQNILRQRTENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGN------P 277
Query: 305 SRRALLDLTHRV 316
AL+ ++
Sbjct: 278 ELVALVKHLSKM 289
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Escherichia coli [TaxId:
562]}
Length = 299
Score = 100 bits (248), Expect = 5e-25
Identities = 75/328 (22%), Positives = 122/328 (37%), Gaps = 71/328 (21%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 66
+ +Y +G GKR RP ++ V A
Sbjct: 30 TPVVETMQYGALLG--GKRLRPFLVYATGHMFGVS-----------------TNTLDAPA 70
Query: 67 EITEMIHVASLLHDDVLDDADTRR--GIGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 124
E IH SL+HDD+ D G+ + + G A+LAGD L + A L+
Sbjct: 71 AAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADM 130
Query: 125 TEV----------VTLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNS 174
EV A+ + + G+ + + + + +D + +KT +LI +
Sbjct: 131 PEVSDRDRISMISELASASGIAGMCGGQALDLD-AEGKHVPLDALERIHRHKTGALIRAA 189
Query: 175 CKAIALLAGQTAEVAILAFD-YGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIIT 233
+ AL AG A+ D Y +++GLA+Q+ DD+LD G +A+LGK +D + G T
Sbjct: 190 VRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGADQQLGKST 249
Query: 234 APILFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDS 293
P L +E + R+ A + A ++
Sbjct: 250 YPALLGLE---------------------------------QARKKARDLIDDARQSLKQ 276
Query: 294 LPENNDEDVTKSRRALLDLTHRVITRNK 321
L E + + AL L +I RNK
Sbjct: 277 LAEQSLD-----TSALEALADYIIQRNK 299
>d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 348
Score = 99.7 bits (247), Expect = 1e-24
Identities = 56/315 (17%), Positives = 102/315 (32%), Gaps = 33/315 (10%)
Query: 23 GKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDDV 82
GK R ++ L+ + + + ALA + E+ L+ DD+
Sbjct: 51 GKCNRGLTVVAAYRELSGP-GQKDAESLRCALA---------VGWCIELFQAFFLVADDI 100
Query: 83 LDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRA-----------CVALASLKNTEVVTLL 131
+D + TRRG G L + FLL + L + T
Sbjct: 101 MDQSLTRRGQLCWYKKEGVGLDAINDSFLLESSVYRVLKKYCRQRPYYVHLLELFLQTAY 160
Query: 132 ATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLI--SNSCKAIALLAGQTAEVA 189
T + ++ T ++ S + Y YKTA A+ ++ + E
Sbjct: 161 QTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGIDSKEEH 220
Query: 190 ILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEF-PQLRT 248
A +G +Q+ DD LD G A GK +DI+ + ++ ++ P+ R
Sbjct: 221 ENAKAILLEMGEYFQIQDDYLDCFGDPALTGKVG-TDIQDNKCSWLVVQCLQRVTPEQRQ 279
Query: 249 VVEQGFE--DSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPENNDEDVTKSR 306
++E + + V E ++ I+ +
Sbjct: 280 LLEDNYGRKEPEKVAKVKELYEAVGMRAAFQQYEESSYRRLQELIEKHSNR------LPK 333
Query: 307 RALLDLTHRVITRNK 321
L L ++ R K
Sbjct: 334 EIFLGLAQKIYKRQK 348
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 96.7 bits (239), Expect = 6e-24
Identities = 66/288 (22%), Positives = 121/288 (42%), Gaps = 28/288 (9%)
Query: 9 LASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIAEI 68
+ GK R + +L V + E
Sbjct: 20 FPEQIMKDLPLY--GKMLRVRLSILSFKNRGVEIGEDAIS----------------SLAA 61
Query: 69 TEMIHVASLLHDDVLDDADTRRGIGSLNFVMGNKLAVLAGDFLLSRACVALASLKNTEVV 128
E++H+ASLLHDDV+D A RRG ++NF+ G+K AV AGD +L A + + N ++
Sbjct: 62 LELVHLASLLHDDVIDGARFRRGKETINFMYGDKAAVAAGDLVLVSAFHTVEEIGNNKLR 121
Query: 129 TLLATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCKAIALLAGQTAEV 188
V+ + E + S + + + Y++ K+ +L + + ALL G+ E
Sbjct: 122 RAFLNVIGKMSEAE-LIEQLSRYKPITKEEYLRIVEGKSGALFGLALQLPALLEGELGED 180
Query: 189 AILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRT 248
++ G +G YQ+ DD++DF G G D+++G+ + P++ AME+FP+ R
Sbjct: 181 ---LYNLGVTIGTIYQMFDDIMDFAGMEKIGKDGF-LDLKNGVASFPLVTAMEKFPEARQ 236
Query: 249 VVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPE 296
+ E + + ++ + +++ E L +
Sbjct: 237 MFEN-----RDWSGLMSFMREKGILKECEETLKVLVKNVIIENSWLRD 279
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase
(geranyltranstransferase) {Staphylococcus aureus [TaxId:
1280]}
Length = 290
Score = 80.1 bits (196), Expect = 6e-18
Identities = 69/323 (21%), Positives = 112/323 (34%), Gaps = 69/323 (21%)
Query: 7 PKLASAAEYFFKMGVEGKRFRPTVLLLMATALNVRVPEPLHDGVEDALATELRTRQQCIA 66
+L + Y G GKR RP +LLL +LN A
Sbjct: 27 TQLEESMLYSLNAG--GKRIRPVLLLLTLDSLNTE-----------------YELGMKSA 67
Query: 67 EITEMIHVASLLHDDVLDDADTRRG--IGSLNFVMGNKLAVLAGDFLLSRACVALASLKN 124
EMIH SL+HDD+ + + + V G A+LAGD LL++A ++S
Sbjct: 68 IALEMIHTYSLIHDDLPAMDNDDYRRGKLTNHKVYGEWTAILAGDALLTKAFELISSDDR 127
Query: 125 TEVVTL--------LATVVEHLVTGETMQMTTSSDQRCSMDYYMQKTYYKTASLISNSCK 176
+A+ +V G+ + M S Q ++ KT +L++ +
Sbjct: 128 LTDEVKIKVLQRLSIASGHVGMVGGQMLDMQ-SEGQPIDLETLEMIHKTKTGALLTFAVM 186
Query: 177 AIALLAGQTAEVAILAFDYGKNLGLAYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPI 236
+ A +A Y +LG+ +Q+ DD+LD G A LGK SD+ + T
Sbjct: 187 SAADIANVDDTTKEHLESYSYHLGMMFQIKDDLLDCYGDEAKLGKKVGSDLENNKSTYVS 246
Query: 237 LFAMEEFPQLRTVVEQGFEDSSNVDIALEYLGKSRGIQKTRELAVKHANLAAAAIDSLPE 296
L G + H + A + + E
Sbjct: 247 LL---------------------------------GKDGAEDKLTYHRDAAVDELTQIDE 273
Query: 297 NNDEDVTKSRRALLDLTHRVITR 319
+ + LL++ +R
Sbjct: 274 QFN------TKHLLEIVDLFYSR 290
>d1l8na2 d.92.2.2 (A:4-142) alpha-D-glucuronidase, N-terminal domain
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 139
Score = 26.5 bits (58), Expect = 2.9
Identities = 14/104 (13%), Positives = 30/104 (28%), Gaps = 8/104 (7%)
Query: 202 AYQLIDDVLDFTGTSASLGKGSLSDIRHGIITAPILFAMEEFPQLRTVVEQGFE---DSS 258
+L + + + + E + V +G+ D
Sbjct: 36 VEELQKGLRSMMEIEPQVVQEVNETANSIWLGTLEDEEFERPLEGTLVHPEGYVIRSDVD 95
Query: 259 NVDIALEYLGKSR-----GIQKTRELAVKHANLAAAAIDSLPEN 297
+ + +GK+ G+ L N+A +I P+N
Sbjct: 96 DGPFRIYIIGKTDAGVLYGVFHFLRLLQMGENIAQLSIIEQPKN 139
>d1vrga2 c.14.1.4 (A:252-515) Propionyl-CoA carboxylase complex B
subunit, PccB {Thermotoga maritima [TaxId: 2336]}
Length = 264
Score = 27.0 bits (59), Expect = 3.3
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 1/48 (2%)
Query: 47 HDGVEDALATELRTRQQCIAEITEMIHVASLLHDD-VLDDADTRRGIG 93
+ + T + ++ + AS + D V+D +TR+ I
Sbjct: 194 IEASSNPEETRRKLIEEYKQQFANPYIAASRGYVDMVIDPRETRKYIM 241
>d1xnya2 c.14.1.4 (A:268-530) Propionyl-CoA carboxylase complex B
subunit, PccB {Streptomyces coelicolor [TaxId: 1902]}
Length = 263
Score = 26.3 bits (57), Expect = 5.9
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 37 ALNVRVPEPLHDGVEDALATELRTRQQCIAEITEMIHVASLLHDD-VLDDADTRRGIG 93
A+N+ + D +DA AT R Q+ + A + D V+ +DTRR I
Sbjct: 183 AVNILHRRTIADAGDDAEATRARLIQEYEDALLNPYTAAERGYVDAVIMPSDTRRHIV 240
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus
cuniculus) [TaxId: 9986]}
Length = 551
Score = 25.7 bits (56), Expect = 9.0
Identities = 6/27 (22%), Positives = 11/27 (40%)
Query: 56 TELRTRQQCIAEITEMIHVASLLHDDV 82
T L++ Q +T I + H +
Sbjct: 406 TSLQSVAQACHFVTMCIFTCTGQHSSI 432
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.364
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,081,857
Number of extensions: 47417
Number of successful extensions: 104
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 18
Length of query: 321
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 236
Effective length of database: 1,240,546
Effective search space: 292768856
Effective search space used: 292768856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.5 bits)