BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 020766
         (321 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9LSF0|PTR34_ARATH Probable peptide/nitrate transporter At3g25260 OS=Arabidopsis
           thaliana GN=At3g25260 PE=2 SV=1
          Length = 515

 Score = 33.9 bits (76), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 45/178 (25%), Positives = 74/178 (41%), Gaps = 36/178 (20%)

Query: 107 LYTSKPVSFSSTMSAIPKVLKRLFITFLWVSLLMIIYNA-VFLSFLILLIIAIDTQSALL 165
           +Y +K +++S+  +A       +   F+  S L+ I+   V  SFL        T+ A  
Sbjct: 51  MYFTKSMNYSTPKAAT------MVTNFVGTSFLLTIFGGFVADSFL--------TRFAAF 96

Query: 166 VLFCMLVIF-LLFLVVHVYITALWHLASVVSVLEPLYGFAAMKKSYELLKGKTRMAGVLV 224
           VLF  + +  L+ L +  +IT L          +P  G           K  T  + VL 
Sbjct: 97  VLFGSIELLGLIMLTLQAHITKL----------QPQGG----------KKPSTPQSTVLF 136

Query: 225 FGYLAICAAIGSVFGVVVVHGGDRYGVFTRIVVGGFLVGVLVIVNLVGLLVQSVFYYV 282
            G  AI   +G V G +  HGGD+ G   + ++ GF       V L G L  ++  ++
Sbjct: 137 TGLYAIAIGVGGVKGSLPAHGGDQIGTRNQRLISGFFNWYFFSVCLGGFLAVTLMVWI 194


>sp|Q8S628|PDR13_ORYSJ Pleiotropic drug resistance protein 13 OS=Oryza sativa subsp.
            japonica GN=PDR13 PE=3 SV=1
          Length = 1441

 Score = 32.7 bits (73), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 16/101 (15%)

Query: 164  LLVLFCMLVIFLLFLVVHVYITALWHLASVVSVLEPLYGFAAMKKSYELLKG----KTRM 219
            L+ +F     F  + +V V +T   H+ASVVS        +A    + LL G    ++R+
Sbjct: 1304 LIYMFLTFTYFTFYGMVAVGLTPTQHMASVVS--------SAFYSLWNLLSGFLIPQSRI 1355

Query: 220  AGVLVFGYLAICAAIGSVFGVVVVHGGDRYGVFTRIVVGGF 260
             G  ++ Y  IC    ++ GV+    GD   V TRIV  GF
Sbjct: 1356 PGWWIWFYY-ICPVAWTLRGVITSQLGD---VDTRIVGPGF 1392


>sp|Q9P6N9|PER1_SCHPO Protein PER1 homolog OS=Schizosaccharomyces pombe (strain 972 /
           ATCC 24843) GN=SPAC823.07 PE=3 SV=1
          Length = 331

 Score = 32.7 bits (73), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 186 ALWHLASVVSVLEPLYGFAAMKKSYELLKGKTRMAG 221
           ALWHL S V +   LYGF   K SY+L KG  ++  
Sbjct: 292 ALWHL-STVPITHYLYGFVVRKCSYDLTKGTFKIKA 326


>sp|O26140|TRUB_METTH Probable tRNA pseudouridine synthase B OS=Methanothermobacter
           thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
           10044 / NBRC 100330 / Delta H) GN=truB PE=3 SV=1
          Length = 324

 Score = 32.0 bits (71), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 7/79 (8%)

Query: 242 VVHGGDRYGVFTRIVVGGFLVGVLVIVNLVGLLVQSVFYYVCKSYHHQEIDKIALHDHLG 301
           V HGG         V G   +G+     ++ LL+++   YVC    H+E+D+  + + LG
Sbjct: 65  VGHGG----TLDPKVTGVLPLGIDRATRVMQLLLEAPKEYVCLMRVHREVDEERIREVLG 120

Query: 302 GYLG---EYVPLKSSIQME 317
            + G   +  PLKS+++ +
Sbjct: 121 EFQGKIFQIPPLKSAVKRD 139


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.333    0.146    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,604,526
Number of Sequences: 539616
Number of extensions: 4095696
Number of successful extensions: 15692
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 15671
Number of HSP's gapped (non-prelim): 72
length of query: 321
length of database: 191,569,459
effective HSP length: 117
effective length of query: 204
effective length of database: 128,434,387
effective search space: 26200614948
effective search space used: 26200614948
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 61 (28.1 bits)