Query 020766
Match_columns 321
No_of_seqs 134 out of 247
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 04:59:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020766.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020766hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06161 DUF975: Protein of un 99.2 1.8E-08 3.9E-13 91.6 24.9 230 12-287 2-243 (243)
2 PF10110 GPDPase_memb: Membran 99.1 2.1E-09 4.6E-14 90.7 13.8 134 99-233 8-148 (149)
3 PF06790 UPF0259: Uncharacteri 99.0 1.5E-07 3.2E-12 85.6 23.6 181 10-225 2-195 (248)
4 PRK02868 hypothetical protein; 98.8 7E-06 1.5E-10 74.2 23.6 165 82-284 79-243 (245)
5 PF10110 GPDPase_memb: Membran 89.4 11 0.00025 31.3 13.1 121 7-138 18-144 (149)
6 COG4781 Membrane domain of mem 88.8 21 0.00046 33.6 24.0 40 181-220 178-217 (340)
7 PF04515 Choline_transpo: Plas 84.9 34 0.00074 32.1 29.0 98 190-287 218-328 (334)
8 PF13197 DUF4013: Protein of u 83.5 26 0.00057 29.6 14.9 23 1-23 30-53 (169)
9 PF02439 Adeno_E3_CR2: Adenovi 56.0 19 0.0004 23.0 3.1 23 267-289 12-34 (38)
10 PRK04949 putative sulfate tran 48.2 2.2E+02 0.0047 26.0 20.1 45 179-229 171-216 (251)
11 PF15050 SCIMP: SCIMP protein 41.3 64 0.0014 26.1 4.8 44 268-311 16-73 (133)
12 COG4736 CcoQ Cbb3-type cytochr 40.7 36 0.00078 24.1 3.0 38 271-317 18-55 (60)
13 PF06161 DUF975: Protein of un 38.7 2.4E+02 0.0052 25.1 9.0 33 207-239 8-40 (243)
14 PF05545 FixQ: Cbb3-type cytoc 36.7 47 0.001 22.1 3.0 26 277-313 24-49 (49)
15 PF03605 DcuA_DcuB: Anaerobic 34.7 1.1E+02 0.0023 29.7 6.1 96 16-121 69-168 (364)
16 KOG3477 Putative cytochrome c 33.0 21 0.00046 27.1 0.9 21 277-298 55-75 (97)
17 COG5523 Predicted integral mem 32.9 4E+02 0.0086 24.6 12.5 47 181-227 152-203 (271)
18 PF12911 OppC_N: N-terminal TM 32.7 91 0.002 20.9 4.1 25 115-139 5-29 (56)
19 PF11368 DUF3169: Protein of u 31.6 1.8E+02 0.0039 26.3 6.9 18 217-234 8-25 (248)
20 PF11359 gpUL132: Glycoprotein 29.4 70 0.0015 28.5 3.6 31 271-301 66-98 (235)
21 PF12911 OppC_N: N-terminal TM 28.3 88 0.0019 21.0 3.4 27 16-42 4-30 (56)
22 PLN03074 auxin influx permease 27.3 2.8E+02 0.0061 27.7 8.1 33 255-287 76-108 (473)
23 PF13829 DUF4191: Domain of un 25.6 2.8E+02 0.0061 25.0 6.8 85 115-211 13-102 (224)
24 PF01595 DUF21: Domain of unkn 24.6 3.3E+02 0.0071 22.7 7.1 44 261-304 130-174 (183)
25 PF15176 LRR19-TM: Leucine-ric 24.4 2.9E+02 0.0062 21.7 5.8 46 250-295 14-59 (102)
26 PF10260 SAYSvFN: Uncharacteri 23.9 82 0.0018 23.1 2.6 38 277-320 29-67 (71)
27 PF04854 DUF624: Protein of un 21.7 3.1E+02 0.0067 19.6 10.0 39 93-131 21-61 (77)
28 TIGR01006 polys_exp_MPA1 polys 21.6 1.4E+02 0.003 26.4 4.2 28 112-139 7-34 (226)
29 PF13197 DUF4013: Protein of u 21.4 4.8E+02 0.01 21.7 16.6 55 87-146 9-63 (169)
30 PRK13859 type IV secretion sys 20.8 40 0.00086 23.0 0.4 15 305-319 34-48 (55)
31 KOG2754 Oligosaccharyltransfer 20.5 29 0.00063 33.6 -0.4 17 301-317 317-335 (443)
No 1
>PF06161 DUF975: Protein of unknown function (DUF975); InterPro: IPR010380 This is a family of uncharacterised bacterial proteins.
Probab=99.19 E-value=1.8e-08 Score=91.62 Aligned_cols=230 Identities=17% Similarity=0.254 Sum_probs=127.1
Q ss_pred ChHHHHHHhhhhcccChhhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhcCCCCCCCccchhhhHHHHHHHHHHHHHHHH
Q 020766 12 SIPDILRESISIPRRAARTFYFITLILIFPLSFAILAHSLFTHPILRQLEDHPTYDPTETRHQWTRLLVFQFCYLIFLFA 91 (321)
Q Consensus 12 ~~~~Il~ea~~i~~~n~~~f~~l~~~l~lpls~~~l~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (321)
+-.|+=++|.+.++.|++....+.+...+..+.... ..+..++. ..+..... .+..++
T Consensus 2 ~~kelK~~Ak~~L~gn~~~~vl~~l~~~li~~~~~~--------~~~~~~~~-------~~~~~~~~-------ii~~lv 59 (243)
T PF06161_consen 2 TRKELKRQAKEQLKGNWGKAVLICLLIILISSLISF--------LISIIGSI-------GVSSFISI-------IIVSLV 59 (243)
T ss_pred CHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH--------HHHHHhHH-------HHHHHHHH-------HHHHHH
Confidence 446788999999999999877776666542222111 00000000 00000000 223333
Q ss_pred HHHHHHHHHHHHHHHHhcC-CCCchhhhhhhh-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH-Hhcc---
Q 020766 92 FSLLSTAAVVFTVASLYTS-KPVSFSSTMSAI-PKVLKRLFITFLWVSLLMIIYNAVFLSFLILLI----IA-IDTQ--- 161 (321)
Q Consensus 92 ~~ll~~a~i~~av~~~~~G-~~~t~~~~~~~~-~~~~~~ll~T~l~~~li~~a~~~~~~~~~~~~~----~~-~~~~--- 161 (321)
.+.+..+ ..+..-+.+.| +++++++....- ++++++.+.+.+...+..+....++.+...... .. .+..
T Consensus 60 ~~~l~~G-~~~~~L~~~r~~~~~~~~d~f~~F~~~~f~k~~~~~ll~~l~~~Lw~ll~~i~~~i~~~~~~~~~~~~~~~~ 138 (243)
T PF06161_consen 60 SGPLSAG-YSFFYLDIVRGKEEPSFSDLFYGFKKKRFGKSFLLYLLISLFIFLWSLLFIIGFFIFFISFFIFLVGSMNSR 138 (243)
T ss_pred HHHHHHH-HHHHHHHHHhCCCCCCHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence 3444444 44555567777 899999998775 467777777777776666555544332221111 11 0111
Q ss_pred hhHH-HHHHHHHHHHHHHHHHHHHHHHhhccceeeeeC-CcchhhHhhhhHHhhcCCchhHHHHHHHHHHHHHHHHHHHH
Q 020766 162 SALL-VLFCMLVIFLLFLVVHVYITALWHLASVVSVLE-PLYGFAAMKKSYELLKGKTRMAGVLVFGYLAICAAIGSVFG 239 (321)
Q Consensus 162 ~~~~-~~~~~~l~~~~~~~~~~yl~v~~~la~vvsVlE-~~~g~~Al~rS~~L~rG~~~~~l~l~ll~~l~~~~i~~~~~ 239 (321)
.... .........+...+..++.....++++-+..-+ |.+..+|+++|+++|||++|+.+.+.+-+-- +
T Consensus 139 ~~~~~~~~~~~~~~l~~~i~~i~~~~~y~~~~yil~d~~~~~~~~al~~S~~lmkg~k~~~f~l~Lsfig------w--- 209 (243)
T PF06161_consen 139 SSIISLLLLLVLLLLLLIIPGIIVSYSYSMVPYILADNPELGAFEALKRSRKLMKGNKWRLFLLDLSFIG------W--- 209 (243)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHH------H---
Confidence 1111 111111222333444556666666655543322 2689999999999999999999988875521 1
Q ss_pred hhheeccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCcc
Q 020766 240 VVVVHGGDRYGVFTRIVVGGFLVGVLVIVNLVGLLVQSVFYYVCKSYH 287 (321)
Q Consensus 240 ~~v~~~~~~~g~~~~~~~g~v~~~l~~~~~l~~~vv~tV~Y~~CK~~~ 287 (321)
..+..+.+....-.+.|+..++++.||.|+|+|+
T Consensus 210 --------------~~L~~~t~gi~~l~~~pY~~~~~a~fY~~l~~~~ 243 (243)
T PF06161_consen 210 --------------YILGLLTFGIGLLWVIPYINTAQAEFYEELRKRK 243 (243)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 0110111112223355999999999999999875
No 2
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [].
Probab=99.10 E-value=2.1e-09 Score=90.75 Aligned_cols=134 Identities=17% Similarity=0.189 Sum_probs=88.9
Q ss_pred HHHHHHHHHhcCCCCchhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h--cch---h-HHHHHHHH
Q 020766 99 AVVFTVASLYTSKPVSFSSTMSAIPKVLKRLFITFLWVSLLMIIYNAVFLSFLILLIIAI-D--TQS---A-LLVLFCML 171 (321)
Q Consensus 99 ~i~~av~~~~~G~~~t~~~~~~~~~~~~~~ll~T~l~~~li~~a~~~~~~~~~~~~~~~~-~--~~~---~-~~~~~~~~ 171 (321)
.++..+.+...||+.|.++.++.+.+++++......+..++-+..... +..+...-... + -+. + ...-....
T Consensus 8 ~li~~~~~~~~~~~~s~~~l~~~~~~~~~~l~~~~~l~~l~y~ll~lP-~~~~~~~s~ll~~l~IP~FI~~~i~~~~~~~ 86 (149)
T PF10110_consen 8 FLILGIYRILRGEKISLRSLLKTAFKRLRKLFGPQNLLFLLYFLLILP-FANLGFSSSLLSKLKIPEFITDYIMKNPWLL 86 (149)
T ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-HHHHHHHHHHHccCcCchHHHHHHHHhHHHH
Confidence 345667788999999999999888888887776665443332222111 11111100011 0 000 0 00001122
Q ss_pred HHHHHHHHHHHHHHHHhhccceeeeeCCcchhhHhhhhHHhhcCCchhHHHHHHHHHHHHHH
Q 020766 172 VIFLLFLVVHVYITALWHLASVVSVLEPLYGFAAMKKSYELLKGKTRMAGVLVFGYLAICAA 233 (321)
Q Consensus 172 l~~~~~~~~~~yl~v~~~la~vvsVlE~~~g~~Al~rS~~L~rG~~~~~l~l~ll~~l~~~~ 233 (321)
.+..+..+...|++++|.++.+..++|++...+|+||||+++||++|+.++..+...+..++
T Consensus 87 ~~~~~~~~~~~~l~~R~if~lp~~vle~~~~~~A~k~Sw~ltk~~~~~~~~~~l~~~~~~~~ 148 (149)
T PF10110_consen 87 ILYLLLYLILFYLNIRLIFVLPLIVLENKSFKEALKESWQLTKGRFWRILGRLLLLFIIIGI 148 (149)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence 33445566788999999999999999999999999999999999999999998888776544
No 3
>PF06790 UPF0259: Uncharacterised protein family (UPF0259); InterPro: IPR009627 This is a group of proteins of unknown function.
Probab=99.04 E-value=1.5e-07 Score=85.57 Aligned_cols=181 Identities=22% Similarity=0.282 Sum_probs=113.2
Q ss_pred CCChHHHHHHhhhhcccChhhHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhc---C-CCC--CCC-----ccchhh-hHH
Q 020766 10 FLSIPDILRESISIPRRAARTFYFITLILIFPLSFAILAHSLFTHPILRQLE---D-HPT--YDP-----TETRHQ-WTR 77 (321)
Q Consensus 10 pL~~~~Il~ea~~i~~~n~~~f~~l~~~l~lpls~~~l~~~~~~~pl~~~~~---~-~~~--~~~-----~~~~~~-~~~ 77 (321)
|.+..+++|++++-+|++.+..+-++++..... +.+-+.. .|=.++++ . ... +.. ++.++| -..
T Consensus 2 ~ita~~l~rDs~nFfrnq~~~I~llsll~a~it--vil~~~~--~p~~~~l~~l~~~~~~~~~~sl~~~v~~ms~eqq~~ 77 (248)
T PF06790_consen 2 PITANSLYRDSFNFFRNQLISILLLSLLTAFIT--VILNHIF--SPNAEQLQILSNNSDFSSSMSLQDIVQQMSPEQQNV 77 (248)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHh--CccHHHHHHHHhhhchhccccHHHHHHhCCHHHHHH
Confidence 667889999999999998775544444333222 1111221 22112221 1 111 111 112222 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhhhhhHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 020766 78 LLVFQFCYLIFLFAFSLLSTAAVVFTVASLYTSKPVSFSSTMSAIPKVLKRLFITFLWVSLLM-IIYNAVFLSFLILLII 156 (321)
Q Consensus 78 l~~~~~~~~~~~~~~~ll~~a~i~~av~~~~~G~~~t~~~~~~~~~~~~~~ll~T~l~~~li~-~a~~~~~~~~~~~~~~ 156 (321)
++...++.....++...+..+.+..-......||+.+..++++...+.|+++++..+...++. ++..
T Consensus 78 ll~~sa~~~~s~Lig~~lL~g~li~li~~~s~g~~~s~~~~i~~~~~~lp~LllL~~l~tllI~lG~~------------ 145 (248)
T PF06790_consen 78 LLKASAASTFSSLIGNTLLSGGLITLIQAVSNGQRVSILQAIGASLPLLPRLLLLIFLCTLLIQLGFM------------ 145 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------------
Confidence 333344444555666677788887778888899999999999998888988765554333221 1111
Q ss_pred HHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeeeCCcchhhHhhhhHHhhcCCchhHHHHHH
Q 020766 157 AIDTQSALLVLFCMLVIFLLFLVVHVYITALWHLASVVSVLEPLYGFAAMKKSYELLKGKTRMAGVLVF 225 (321)
Q Consensus 157 ~~~~~~~~~~~~~~~l~~~~~~~~~~yl~v~~~la~vvsVlE~~~g~~Al~rS~~L~rG~~~~~l~l~l 225 (321)
.+.+=-+|+++.+++|+++.+.|+++..+|+|+||++++|++|+.....+
T Consensus 146 -------------------L~ivPGI~l~I~lslap~ilv~ek~~i~~Amr~S~~Lt~~~~~ii~p~vL 195 (248)
T PF06790_consen 146 -------------------LFIVPGIILAILLSLAPIILVLEKKGIFDAMRASWKLTFGNFRIIIPAVL 195 (248)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01112458889999999999999999999999999999999887654443
No 4
>PRK02868 hypothetical protein; Provisional
Probab=98.75 E-value=7e-06 Score=74.21 Aligned_cols=165 Identities=17% Similarity=0.210 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 020766 82 QFCYLIFLFAFSLLSTAAVVFTVASLYTSKPVSFSSTMSAIPKVLKRLFITFLWVSLLMIIYNAVFLSFLILLIIAIDTQ 161 (321)
Q Consensus 82 ~~~~~~~~~~~~ll~~a~i~~av~~~~~G~~~t~~~~~~~~~~~~~~ll~T~l~~~li~~a~~~~~~~~~~~~~~~~~~~ 161 (321)
+++-....++...+..+++..=....-.||+++..++++...+.|+++++-.+...++. ..|
T Consensus 79 s~~~~~s~lig~~lL~g~il~~I~~~s~g~~v~~~~~~~~s~~~lp~l~lL~fl~tLlI----------------~lG-- 140 (245)
T PRK02868 79 SAASTFSGLIGNTLLLGGILTLIQLVSAGQRVSALRAIGASAPILPKLLILIFLTTLLI----------------QLG-- 140 (245)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHh--
Confidence 33333444445555555555555556678899999999999898987764433222221 000
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhccceeeeeCCcchhhHhhhhHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 020766 162 SALLVLFCMLVIFLLFLVVHVYITALWHLASVVSVLEPLYGFAAMKKSYELLKGKTRMAGVLVFGYLAICAAIGSVFGVV 241 (321)
Q Consensus 162 ~~~~~~~~~~l~~~~~~~~~~yl~v~~~la~vvsVlE~~~g~~Al~rS~~L~rG~~~~~l~l~ll~~l~~~~i~~~~~~~ 241 (321)
...+.+--+|++++.++++++-+.|+.+..+|+|+||++.+|++|+..-..+.- +.....-..+.-.
T Consensus 141 ------------~~L~iiPGI~l~I~lsLa~vi~v~ek~~v~~Air~S~~l~~~~~~~i~p~il~W-ll~k~ll~ll~~~ 207 (245)
T PRK02868 141 ------------FMLVVVPGILLAIALSLSPVILVTEKMGIFASMRASMRLAWANMRLVAPAVLLW-LLAKTLLLLLASS 207 (245)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 011122346899999999999999999999999999999999999876644322 2222221111111
Q ss_pred heeccccCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc
Q 020766 242 VVHGGDRYGVFTRIVVGGFLVGVLVIVNLVGLLVQSVFYYVCK 284 (321)
Q Consensus 242 v~~~~~~~g~~~~~~~g~v~~~l~~~~~l~~~vv~tV~Y~~CK 284 (321)
... . +.-...++...+..++..+..+..-=+|+-+|
T Consensus 208 l~~----~---~~~v~~vi~~~l~nlls~fllIylFRlYmL~~ 243 (245)
T PRK02868 208 FAV----L---TPNVAAVLLNTLSNLISAILLIYLFRLYMLLR 243 (245)
T ss_pred Hhc----c---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 100 1 11233455666777777777777666666554
No 5
>PF10110 GPDPase_memb: Membrane domain of glycerophosphoryl diester phosphodiesterase; InterPro: IPR018476 Members of this family comprise the membrane domain of the prokaryotic enzyme glycerophosphoryl diester phosphodiesterase [].
Probab=89.44 E-value=11 Score=31.32 Aligned_cols=121 Identities=13% Similarity=0.271 Sum_probs=59.6
Q ss_pred CCCCCChHHHHHHhhhhcccC--hh-hHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhcCCCCCCCccchhhhHHHHHHHH
Q 020766 7 ELQFLSIPDILRESISIPRRA--AR-TFYFITLILIFPLSFAILAHSLFTHPILRQLEDHPTYDPTETRHQWTRLLVFQF 83 (321)
Q Consensus 7 ~LrpL~~~~Il~ea~~i~~~n--~~-~f~~l~~~l~lpls~~~l~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~l~~~~~ 83 (321)
.-++.+..++++++++-.++- ++ .++.+-+++..|+.-+ ....|+.++++ -| +=..|...+......
T Consensus 18 ~~~~~s~~~l~~~~~~~~~~l~~~~~l~~l~y~ll~lP~~~~-----~~~s~ll~~l~-IP----~FI~~~i~~~~~~~~ 87 (149)
T PF10110_consen 18 RGEKISLRSLLKTAFKRLRKLFGPQNLLFLLYFLLILPFANL-----GFSSSLLSKLK-IP----EFITDYIMKNPWLLI 87 (149)
T ss_pred cCCcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH-----HHHHHHHccCc-Cc----hHHHHHHHHhHHHHH
Confidence 446778999999999877752 33 3334555666676433 33444544332 01 011122222111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCC-C--chhhhhhhhhHhHHHHHHHHHHHHH
Q 020766 84 CYLIFLFAFSLLSTAAVVFTVASLYTSKP-V--SFSSTMSAIPKVLKRLFITFLWVSL 138 (321)
Q Consensus 84 ~~~~~~~~~~ll~~a~i~~av~~~~~G~~-~--t~~~~~~~~~~~~~~ll~T~l~~~l 138 (321)
.|..+..+...+ ..=.+++...+..+++ . ++++.|+.+++++++.+...+...+
T Consensus 88 ~~~~~~~~~~~l-~~R~if~lp~~vle~~~~~~A~k~Sw~ltk~~~~~~~~~~l~~~~ 144 (149)
T PF10110_consen 88 LYLLLYLILFYL-NIRLIFVLPLIVLENKSFKEALKESWQLTKGRFWRILGRLLLLFI 144 (149)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 223222222221 2223444445554443 2 4667777788888877766654433
No 6
>COG4781 Membrane domain of membrane-anchored glycerophosphoryl diester phosphodiesterase [Energy production and conversion]
Probab=88.77 E-value=21 Score=33.63 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=35.5
Q ss_pred HHHHHHHhhccceeeeeCCcchhhHhhhhHHhhcCCchhH
Q 020766 181 HVYITALWHLASVVSVLEPLYGFAAMKKSYELLKGKTRMA 220 (321)
Q Consensus 181 ~~yl~v~~~la~vvsVlE~~~g~~Al~rS~~L~rG~~~~~ 220 (321)
..|+++|.-++.|-.+++++...+|+|.||+-+|.+.-+.
T Consensus 178 iFyis~RLif~LPl~i~~~~tv~~Air~Swk~TKk~~f~l 217 (340)
T COG4781 178 IFYISVRLIFALPLIILDQLTVREAIRESWKKTKKNVFFL 217 (340)
T ss_pred HHHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHhhhHHHH
Confidence 3499999999999999999999999999999999775543
No 7
>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [].
Probab=84.95 E-value=34 Score=32.10 Aligned_cols=98 Identities=9% Similarity=0.052 Sum_probs=55.8
Q ss_pred ccceeeeeCCcchhhHhhhhHHhhcCCchhHHHHHHHHH-------HHHHHHHHHHHhhheec---cccCCcc-hhHHHH
Q 020766 190 LASVVSVLEPLYGFAAMKKSYELLKGKTRMAGVLVFGYL-------AICAAIGSVFGVVVVHG---GDRYGVF-TRIVVG 258 (321)
Q Consensus 190 la~vvsVlE~~~g~~Al~rS~~L~rG~~~~~l~l~ll~~-------l~~~~i~~~~~~~v~~~---~~~~g~~-~~~~~g 258 (321)
.|.+-..+-+.+=.+|-||+++|++.+.++....--+.. +..+...+.+....... .+..... ......
T Consensus 218 ~ayi~~ai~G~~F~~sak~~~~L~~~n~~~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (334)
T PF04515_consen 218 YAYIYIAIYGKSFCESAKRAFELIKRNGLRAIIVDGLGSFVLFLGKLFISLLCGLIAYLILSNSSFKNDLSYPIVPALIS 297 (334)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccccchHHHHHHH
Confidence 455666677888889999999999999998554433222 22223333333333221 1111110 111112
Q ss_pred HH--HHHHHHHHHHHHHHHHHhHHhhccCcc
Q 020766 259 GF--LVGVLVIVNLVGLLVQSVFYYVCKSYH 287 (321)
Q Consensus 259 ~v--~~~l~~~~~l~~~vv~tV~Y~~CK~~~ 287 (321)
.+ +........+++..+.|++.+-|...+
T Consensus 298 ~~i~~~i~~~f~~v~~~~vdti~vc~~~d~e 328 (334)
T PF04515_consen 298 FFIGYFISSIFMSVYSSAVDTIFVCYAEDPE 328 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22 344455677899999999998876543
No 8
>PF13197 DUF4013: Protein of unknown function (DUF4013)
Probab=83.51 E-value=26 Score=29.61 Aligned_cols=23 Identities=4% Similarity=0.020 Sum_probs=17.5
Q ss_pred CCCCCCCCCCC-ChHHHHHHhhhh
Q 020766 1 MDLSPGELQFL-SIPDILRESISI 23 (321)
Q Consensus 1 m~~~~~~LrpL-~~~~Il~ea~~i 23 (321)
|+++++++.+. +.++.+++.+|.
T Consensus 30 ~~g~~~~lP~~~~~~~l~~~G~~~ 53 (169)
T PF13197_consen 30 AIGGSDPLPEFNDWGELFVDGLKA 53 (169)
T ss_pred hccCCCCCCCchHHHHHHHHHHHH
Confidence 35666788887 788888888876
No 9
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=55.98 E-value=19 Score=23.03 Aligned_cols=23 Identities=26% Similarity=0.667 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhHHhhccCcccc
Q 020766 267 IVNLVGLLVQSVFYYVCKSYHHQ 289 (321)
Q Consensus 267 ~~~l~~~vv~tV~Y~~CK~~~~E 289 (321)
++.-+..++.+++||-|.-|++|
T Consensus 12 V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 12 VVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHcccc
Confidence 34456667788899888877654
No 10
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=48.20 E-value=2.2e+02 Score=26.03 Aligned_cols=45 Identities=9% Similarity=-0.037 Sum_probs=26.3
Q ss_pred HHHHHHHHHhhccceeeeeCCc-chhhHhhhhHHhhcCCchhHHHHHHHHHH
Q 020766 179 VVHVYITALWHLASVVSVLEPL-YGFAAMKKSYELLKGKTRMAGVLVFGYLA 229 (321)
Q Consensus 179 ~~~~yl~v~~~la~vvsVlE~~-~g~~Al~rS~~L~rG~~~~~l~l~ll~~l 229 (321)
.+-.|+..+-.+..+ +|++ .. .+++.++.|.++.+.++.-....+
T Consensus 171 ~~~awll~~ey~d~~---~~r~~~~---~~~~r~~l~~~r~~~~gfG~~~~l 216 (251)
T PRK04949 171 LFSAWMMAIQYCDYP---FDNHKVS---FKDMRAALRQKRGTSLQFGALVSL 216 (251)
T ss_pred HHHHHHHHHHHhHhH---HHHCCCC---HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 334555555554432 3443 33 566778888888877766554443
No 11
>PF15050 SCIMP: SCIMP protein
Probab=41.28 E-value=64 Score=26.10 Aligned_cols=44 Identities=18% Similarity=0.384 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhHHhhcc-------------Cccccccchhhhhhhhh-cccCcccccC
Q 020766 268 VNLVGLLVQSVFYYVCK-------------SYHHQEIDKIALHDHLG-GYLGEYVPLK 311 (321)
Q Consensus 268 ~~l~~~vv~tV~Y~~CK-------------~~~~E~id~~~l~~~l~-~~~~~y~~l~ 311 (321)
..+.+.+...++|+.|| ..++.+-|+|.-.|+.. +...+--||+
T Consensus 16 II~vS~~lglIlyCvcR~~lRqGkkweiakp~k~~~rdeEkmYENv~n~~~~~LPpLP 73 (133)
T PF15050_consen 16 IILVSVVLGLILYCVCRWQLRQGKKWEIAKPLKQKQRDEEKMYENVLNQSPVQLPPLP 73 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccccceeccchhhhcccHHHHHHHhhcCCcCCCCCCC
Confidence 34556666778899998 22334557777776553 2323334555
No 12
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=40.71 E-value=36 Score=24.08 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=20.0
Q ss_pred HHHHHHHhHHhhccCccccccchhhhhhhhhcccCcccccCCCcccc
Q 020766 271 VGLLVQSVFYYVCKSYHHQEIDKIALHDHLGGYLGEYVPLKSSIQME 317 (321)
Q Consensus 271 ~~~vv~tV~Y~~CK~~~~E~id~~~l~~~l~~~~~~y~~l~~~~~~~ 317 (321)
+..+..++.|+--|.++.+..|.+ +.-+-|||||.|=+
T Consensus 18 ~~l~fiavi~~ayr~~~K~~~d~a---------a~~~l~l~Dd~q~~ 55 (60)
T COG4736 18 FTLFFIAVIYFAYRPGKKGEFDEA---------ARGILPLNDDAQDA 55 (60)
T ss_pred HHHHHHHHHHHHhcccchhhHHHH---------hccCCCCCcchhhh
Confidence 344444555666565553333222 23346899988743
No 13
>PF06161 DUF975: Protein of unknown function (DUF975); InterPro: IPR010380 This is a family of uncharacterised bacterial proteins.
Probab=38.72 E-value=2.4e+02 Score=25.08 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=24.9
Q ss_pred hhhHHhhcCCchhHHHHHHHHHHHHHHHHHHHH
Q 020766 207 KKSYELLKGKTRMAGVLVFGYLAICAAIGSVFG 239 (321)
Q Consensus 207 ~rS~~L~rG~~~~~l~l~ll~~l~~~~i~~~~~ 239 (321)
++|.+..||+|+...++.++..++...++...+
T Consensus 8 ~~Ak~~L~gn~~~~vl~~l~~~li~~~~~~~~~ 40 (243)
T PF06161_consen 8 RQAKEQLKGNWGKAVLICLLIILISSLISFLIS 40 (243)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999998888888776555544443
No 14
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=36.68 E-value=47 Score=22.10 Aligned_cols=26 Identities=8% Similarity=0.298 Sum_probs=14.2
Q ss_pred HhHHhhccCccccccchhhhhhhhhcccCcccccCCC
Q 020766 277 SVFYYVCKSYHHQEIDKIALHDHLGGYLGEYVPLKSS 313 (321)
Q Consensus 277 tV~Y~~CK~~~~E~id~~~l~~~l~~~~~~y~~l~~~ 313 (321)
.+.++..++++ ++..|++++ .|++||
T Consensus 24 gi~~w~~~~~~---------k~~~e~aa~--lpl~dd 49 (49)
T PF05545_consen 24 GIVIWAYRPRN---------KKRFEEAAN--LPLDDD 49 (49)
T ss_pred HHHHHHHcccc---------hhhHHHHHc--cCccCC
Confidence 34445556665 445555654 467665
No 15
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family. Most proteins in this family are predicted to have 12 GES predicted transmembrane regions; however the one member whose membrane topology has been experimentally determined has 10 transmembrane regions, with both the N- and C-termini localized to the periplasm []. The DcuA and DcuB proteins are involved in the transport of aspartate, malate, fumarate and succinate in many species [, , ], and are thought to function as antiporters with any two of these substrates. Since DcuA is encoded in an operon with the gene for aspartase, and DcuB is encoded in an operon with the gene for fumarase, their physiological functions may be to catalyze aspartate:fumarate and fumarate:malate exchange during the anaerobic utilization of aspartate and fumarate, respectively []. The Escherichia coli DcuA and DcuB proteins have very different expression patterns []. DcuA is constitutively expressed; DcuB is strongly induced anaerobically by FNR and C4-dicarboxylates, while it is repressed by nitrate and subject to CRP-mediated catabolite repression.; GO: 0015556 C4-dicarboxylate transmembrane transporter activity, 0015740 C4-dicarboxylate transport, 0016021 integral to membrane
Probab=34.71 E-value=1.1e+02 Score=29.74 Aligned_cols=96 Identities=14% Similarity=0.264 Sum_probs=46.0
Q ss_pred HHHHhhhhcccChhhHHHHHHHHHHHHHHHHHH-HHHh-Hhhhhhhhc-CCCCCCCccchhhhHHHHHHHHHHHHHHHHH
Q 020766 16 ILRESISIPRRAARTFYFITLILIFPLSFAILA-HSLF-THPILRQLE-DHPTYDPTETRHQWTRLLVFQFCYLIFLFAF 92 (321)
Q Consensus 16 Il~ea~~i~~~n~~~f~~l~~~l~lpls~~~l~-~~~~-~~pl~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 92 (321)
..+-|=|++|||||..+-++=++.--+.+..-+ |..+ .-|.+.++. ...-.+.+++.-. .+.++ ...+.
T Consensus 69 lV~~Aek~LRk~Pk~It~lAP~vt~~~T~~~GTgh~a~s~lPVI~eVA~~~~IRPeRPls~s---vvASq-----~aIta 140 (364)
T PF03605_consen 69 LVQIAEKILRKNPKYITFLAPLVTYLFTFLAGTGHVAYSLLPVIAEVAKENGIRPERPLSIS---VVASQ-----IAITA 140 (364)
T ss_pred HHHHHHHHHHhCCCcEEEehhHHHHHHHHHhcccHHHHHhhHHHHHHHHHcCCCCCCchHHH---HHHHh-----cchhc
Confidence 567788999999997655443333323332111 3332 456666653 1111111222111 11111 12344
Q ss_pred HHHHHHHHHHHHHHHhcC-CCCchhhhhhh
Q 020766 93 SLLSTAAVVFTVASLYTS-KPVSFSSTMSA 121 (321)
Q Consensus 93 ~ll~~a~i~~av~~~~~G-~~~t~~~~~~~ 121 (321)
|+++.+.+.. .....+ +.+++.+.+..
T Consensus 141 SPiSAA~~~~--~~~l~~~~gv~~~~iL~V 168 (364)
T PF03605_consen 141 SPISAATVAM--IAILAPAHGVSLLQILAV 168 (364)
T ss_pred CcHHHHHHHH--HHHHccccCCCHHHHHHh
Confidence 5555443333 234455 67888887655
No 16
>KOG3477 consensus Putative cytochrome c oxidase, subunit COX19 [Energy production and conversion]
Probab=33.00 E-value=21 Score=27.08 Aligned_cols=21 Identities=24% Similarity=0.408 Sum_probs=17.3
Q ss_pred HhHHhhccCccccccchhhhhh
Q 020766 277 SVFYYVCKSYHHQEIDKIALHD 298 (321)
Q Consensus 277 tV~Y~~CK~~~~E~id~~~l~~ 298 (321)
+-=|..||+.| .-.|+++-++
T Consensus 55 aK~YlqCRMdh-~Lmdkdd~~~ 75 (97)
T KOG3477|consen 55 AKKYLQCRMDH-GLMDKDDMAE 75 (97)
T ss_pred HHHHHHHhhhc-ccccHHHHHH
Confidence 35699999998 7888888766
No 17
>COG5523 Predicted integral membrane protein [Function unknown]
Probab=32.89 E-value=4e+02 Score=24.60 Aligned_cols=47 Identities=17% Similarity=0.208 Sum_probs=32.2
Q ss_pred HHHHHHHhhccc--eeeeeCCc---chhhHhhhhHHhhcCCchhHHHHHHHH
Q 020766 181 HVYITALWHLAS--VVSVLEPL---YGFAAMKKSYELLKGKTRMAGVLVFGY 227 (321)
Q Consensus 181 ~~yl~v~~~la~--vvsVlE~~---~g~~Al~rS~~L~rG~~~~~l~l~ll~ 227 (321)
..+.+-.++++. .-..+||. +..+++..|...|||.+|+.|.+-+-+
T Consensus 152 ~ii~~~i~~~~~y~ay~~l~dg~~~ga~~vl~eS~~mMKG~kw~lF~L~Lsf 203 (271)
T COG5523 152 LIILGYIASLAYYMAYDQLEDGGYLGAYSVLSESKKMMKGYKWKLFILKLSF 203 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcchhHHHhHHHHHHhccccchhhhhHHH
Confidence 344444444433 33466664 566789999999999999999777654
No 18
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=32.73 E-value=91 Score=20.94 Aligned_cols=25 Identities=4% Similarity=0.065 Sum_probs=15.4
Q ss_pred hhhhhhhhhHhHHHHHHHHHHHHHH
Q 020766 115 FSSTMSAIPKVLKRLFITFLWVSLL 139 (321)
Q Consensus 115 ~~~~~~~~~~~~~~ll~T~l~~~li 139 (321)
.+++|++.+++-...++..++..++
T Consensus 5 ~~~~~~~f~~nk~a~~gl~il~~~v 29 (56)
T PF12911_consen 5 WKDAWRRFRRNKLAVIGLIILLILV 29 (56)
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHH
Confidence 4677877777666666555544433
No 19
>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.
Probab=31.56 E-value=1.8e+02 Score=26.32 Aligned_cols=18 Identities=17% Similarity=-0.184 Sum_probs=8.4
Q ss_pred chhHHHHHHHHHHHHHHH
Q 020766 217 TRMAGVLVFGYLAICAAI 234 (321)
Q Consensus 217 ~~~~l~l~ll~~l~~~~i 234 (321)
.||.+.+.++-+++-+++
T Consensus 8 ~~~~~~~illg~~iGg~~ 25 (248)
T PF11368_consen 8 ILRFLLLILLGGLIGGFI 25 (248)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555555444433333
No 20
>PF11359 gpUL132: Glycoprotein UL132; InterPro: IPR021023 Glycoprotein UL132 is a low-abundance structural component of Human herpesvirus 5 []. The function of this protein is not fully understood.
Probab=29.36 E-value=70 Score=28.50 Aligned_cols=31 Identities=13% Similarity=0.187 Sum_probs=22.0
Q ss_pred HHHHHHHhHHhhccCcccc--ccchhhhhhhhh
Q 020766 271 VGLLVQSVFYYVCKSYHHQ--EIDKIALHDHLG 301 (321)
Q Consensus 271 ~~~vv~tV~Y~~CK~~~~E--~id~~~l~~~l~ 301 (321)
|-.+..+++|-.|+.+.++ +.|.+.=.+-++
T Consensus 66 li~VtvaalYsSC~~~pg~~~~f~~de~~~lld 98 (235)
T PF11359_consen 66 LIVVTVAALYSSCCRRPGRLTRFDDDEAVNLLD 98 (235)
T ss_pred HHHHHHHHHHHHHHhCCCcccccChhhhhcccc
Confidence 4456677999999888877 666655555554
No 21
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=28.32 E-value=88 Score=21.00 Aligned_cols=27 Identities=19% Similarity=0.203 Sum_probs=21.8
Q ss_pred HHHHhhhhcccChhhHHHHHHHHHHHH
Q 020766 16 ILRESISIPRRAARTFYFITLILIFPL 42 (321)
Q Consensus 16 Il~ea~~i~~~n~~~f~~l~~~l~lpl 42 (321)
-.++..+-+++|+..+.++..++.+-+
T Consensus 4 ~~~~~~~~f~~nk~a~~gl~il~~~vl 30 (56)
T PF12911_consen 4 PWKDAWRRFRRNKLAVIGLIILLILVL 30 (56)
T ss_pred HHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 367899999999999988888775443
No 22
>PLN03074 auxin influx permease; Provisional
Probab=27.32 E-value=2.8e+02 Score=27.75 Aligned_cols=33 Identities=12% Similarity=0.129 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhhccCcc
Q 020766 255 IVVGGFLVGVLVIVNLVGLLVQSVFYYVCKSYH 287 (321)
Q Consensus 255 ~~~g~v~~~l~~~~~l~~~vv~tV~Y~~CK~~~ 287 (321)
++.|++...+.+++..+..-...-+|.++|+||
T Consensus 76 ~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~ 108 (473)
T PLN03074 76 MLSGILFQIFYGLLGSWTAYLISVLYVEYRARK 108 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344666666666666666666666787766665
No 23
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=25.62 E-value=2.8e+02 Score=25.02 Aligned_cols=85 Identities=13% Similarity=0.138 Sum_probs=0.0
Q ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcccee
Q 020766 115 FSSTMSAIPKVLKRLFITFLWVSLLMIIYNAVFLSFLILLIIAIDTQSALLVLFCMLVIFLLFLVVHVYITALWHLASVV 194 (321)
Q Consensus 115 ~~~~~~~~~~~~~~ll~T~l~~~li~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~yl~v~~~la~vv 194 (321)
+.++.+..++.-+.+. -++++..+..++++++.-+.++.. .+..++...+.+++..++..+-.=..+-
T Consensus 13 i~q~y~~trk~dp~l~-------~~ml~a~l~~~~v~v~ig~l~~~~-----~~~~i~gi~~g~l~am~vl~rra~ra~Y 80 (224)
T PF13829_consen 13 IWQAYKMTRKEDPKLP-------WLMLGAFLGPIAVFVLIGLLFGSW-----WYWLIIGILLGLLAAMIVLSRRAQRAAY 80 (224)
T ss_pred HHHHHHHHHHHCcchH-------HHHHHHHHHHHHHHHHHHHHHccH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred eeeCCcchhhH-----hhhhHH
Q 020766 195 SVLEPLYGFAA-----MKKSYE 211 (321)
Q Consensus 195 sVlE~~~g~~A-----l~rS~~ 211 (321)
+-+|++.|.++ +||.|+
T Consensus 81 ~qieGqpGAa~avL~~lr~~W~ 102 (224)
T PF13829_consen 81 AQIEGQPGAAGAVLDNLRRGWR 102 (224)
T ss_pred HHhcCCCchHHHHHHhhcCCcc
No 24
>PF01595 DUF21: Domain of unknown function DUF21; InterPro: IPR002550 This transmembrane region has no known function. Many of the sequences in this family are annotated as hemolysins, however this is due to a similarity to Q54318 from SWISSPROT that does not contain this domain. This domain is found in the N terminus of the proteins adjacent to two intracellular CBS domains (IPR000644 from INTERPRO).
Probab=24.61 E-value=3.3e+02 Score=22.68 Aligned_cols=44 Identities=7% Similarity=0.093 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhccCc-cccccchhhhhhhhhccc
Q 020766 261 LVGVLVIVNLVGLLVQSVFYYVCKSY-HHQEIDKIALHDHLGGYL 304 (321)
Q Consensus 261 ~~~l~~~~~l~~~vv~tV~Y~~CK~~-~~E~id~~~l~~~l~~~~ 304 (321)
...++-+..+++.+...+.....+.. +.+..++|++.+++|+-.
T Consensus 130 ~~l~~P~~~~l~~i~~~~~~~~~~~~~~~~~~s~eel~~lv~~~~ 174 (183)
T PF01595_consen 130 MILLYPLVWLLSFISNKILKLFGIENEEDPAVSEEELRSLVEEGE 174 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCccccCCCCHHHHHHHHHhHH
Confidence 34555555566666666666655554 345789999999998876
No 25
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=24.45 E-value=2.9e+02 Score=21.69 Aligned_cols=46 Identities=17% Similarity=0.240 Sum_probs=27.4
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCccccccchhh
Q 020766 250 GVFTRIVVGGFLVGVLVIVNLVGLLVQSVFYYVCKSYHHQEIDKIA 295 (321)
Q Consensus 250 g~~~~~~~g~v~~~l~~~~~l~~~vv~tV~Y~~CK~~~~E~id~~~ 295 (321)
|..|.++.|++.+.+..=+..+-.+=+-+.|...-+++|.+.+.++
T Consensus 14 g~sW~~LVGVv~~al~~SlLIalaaKC~~~~k~~~SY~H~rL~e~e 59 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIALAAKCPVWYKYLASYRHHRLPETE 59 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHhccccccCCccc
Confidence 4446777777754443333334445566777777788777775443
No 26
>PF10260 SAYSvFN: Uncharacterized conserved domain (SAYSvFN); InterPro: IPR019387 This domain of approximately 75 residues contains a highly conserved SATSv/iFN motif. The function is unknown but the domain is conserved from plants to humans.
Probab=23.91 E-value=82 Score=23.07 Aligned_cols=38 Identities=3% Similarity=0.062 Sum_probs=24.9
Q ss_pred HhHHhhccC-ccccccchhhhhhhhhcccCcccccCCCccccccC
Q 020766 277 SVFYYVCKS-YHHQEIDKIALHDHLGGYLGEYVPLKSSIQMENMD 320 (321)
Q Consensus 277 tV~Y~~CK~-~~~E~id~~~l~~~l~~~~~~y~~l~~~~~~~~~~ 320 (321)
.+.|..++. |+.. | ....-.|+...+.+++|+.+||+|
T Consensus 29 ~~I~~Nl~~~r~~g--e----~SAYSVFN~~~~~i~Gtl~aE~~e 67 (71)
T PF10260_consen 29 YLIFTNLGTPRKPG--E----LSAYSVFNKGCERIPGTLTAEQFE 67 (71)
T ss_pred HHHHHcCCCCCCCC--C----ccchhhhCCCccccCCCCCHHHHH
Confidence 345778877 4311 1 223455667788999999999876
No 27
>PF04854 DUF624: Protein of unknown function, DUF624; InterPro: IPR006938 This family consists of uncharacterised or hypothetical bacterial proteins.
Probab=21.73 E-value=3.1e+02 Score=19.58 Aligned_cols=39 Identities=18% Similarity=0.180 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhcCC--CCchhhhhhhhhHhHHHHHH
Q 020766 93 SLLSTAAVVFTVASLYTSK--PVSFSSTMSAIPKVLKRLFI 131 (321)
Q Consensus 93 ~ll~~a~i~~av~~~~~G~--~~t~~~~~~~~~~~~~~ll~ 131 (321)
...++++..+++.+...+| ....++-|+.-|++||+-..
T Consensus 21 igPA~~Al~~~~~~~~~~~~~~~~~~~f~~~fk~nf~~~~~ 61 (77)
T PF04854_consen 21 IGPATAALYYVVRKWVRDEEDSYLFRDFWRAFKQNFKQSLL 61 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCccChHHHHHHHHHHHHHHHHHH
Confidence 3355666777777777777 45678888888888776543
No 28
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family, Gram-positive type. This family contains members from Low GC Gram-positive bacteria; they are proposed to have a function in the export of complex polysaccharides.
Probab=21.63 E-value=1.4e+02 Score=26.39 Aligned_cols=28 Identities=11% Similarity=0.113 Sum_probs=20.5
Q ss_pred CCchhhhhhhhhHhHHHHHHHHHHHHHH
Q 020766 112 PVSFSSTMSAIPKVLKRLFITFLWVSLL 139 (321)
Q Consensus 112 ~~t~~~~~~~~~~~~~~ll~T~l~~~li 139 (321)
.+++++.|+..+++||-.+++.+...++
T Consensus 7 ~i~l~~l~~~l~r~~~~ill~~ll~~~~ 34 (226)
T TIGR01006 7 EIDLLQLLKKLWKRKLLILIVALIFLII 34 (226)
T ss_pred eecHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3789999999999998766655444333
No 29
>PF13197 DUF4013: Protein of unknown function (DUF4013)
Probab=21.38 E-value=4.8e+02 Score=21.71 Aligned_cols=55 Identities=16% Similarity=0.130 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCchhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHH
Q 020766 87 IFLFAFSLLSTAAVVFTVASLYTSKPVSFSSTMSAIPKVLKRLFITFLWVSLLMIIYNAV 146 (321)
Q Consensus 87 ~~~~~~~ll~~a~i~~av~~~~~G~~~t~~~~~~~~~~~~~~ll~T~l~~~li~~a~~~~ 146 (321)
....+..++..+-......++..|++-++.| | +.|++++..-+...++.+.|...
T Consensus 9 ~i~ii~~~~~~GY~~~v~~~~~~g~~~~lP~-~----~~~~~l~~~G~~~~ii~ivy~i~ 63 (169)
T PF13197_consen 9 IIPIIGLFLLLGYLVRVIRSTAIGGSDPLPE-F----NDWGELFVDGLKAFIISIVYSIP 63 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCCCC-c----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556667777776666666665444444 2 23444444444444444444443
No 30
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=20.77 E-value=40 Score=23.00 Aligned_cols=15 Identities=33% Similarity=0.651 Sum_probs=11.2
Q ss_pred CcccccCCCcccccc
Q 020766 305 GEYVPLKSSIQMENM 319 (321)
Q Consensus 305 ~~y~~l~~~~~~~~~ 319 (321)
|.+.|-+||+|.+|-
T Consensus 34 grWqptpsDLq~~~a 48 (55)
T PRK13859 34 GRWQPTPSDLQLTNA 48 (55)
T ss_pred ccccCChhhcccccC
Confidence 344678899999874
No 31
>KOG2754 consensus Oligosaccharyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=20.55 E-value=29 Score=33.59 Aligned_cols=17 Identities=35% Similarity=0.712 Sum_probs=13.4
Q ss_pred hccc-CcccccC-CCcccc
Q 020766 301 GGYL-GEYVPLK-SSIQME 317 (321)
Q Consensus 301 ~~~~-~~y~~l~-~~~~~~ 317 (321)
+|.. ||++|-+ ||||+|
T Consensus 317 ~el~~g~w~P~~adDvQlE 335 (443)
T KOG2754|consen 317 SELSGGEWVPFVADDVQLE 335 (443)
T ss_pred EEecCCeeeeecccceEEE
Confidence 3444 6789999 999998
Done!