Query 020766
Match_columns 321
No_of_seqs 134 out of 247
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 07:52:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020766.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020766hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lo3_A SAGA-associated factor 32.9 10 0.00034 23.9 0.2 24 280-304 17-40 (44)
2 1d8j_A General transcription f 29.6 20 0.00067 26.0 1.3 12 8-19 29-40 (81)
3 2lf6_A Effector protein hopab1 29.4 10 0.00034 28.1 -0.3 27 288-314 32-58 (101)
4 3tl8_B Effector protein hopab2 27.2 13 0.00043 28.3 -0.1 27 288-314 49-75 (117)
5 2lf3_A Effector protein hopab3 23.4 12 0.00042 27.9 -0.8 27 288-314 43-69 (107)
6 2kwv_A RAD30 homolog B, DNA po 21.2 13 0.00045 23.8 -0.8 19 288-317 13-31 (48)
7 3rvy_A ION transport protein; 11.1 2E+02 0.007 24.8 4.0 53 261-314 221-279 (285)
8 1lpl_A Hypothetical 25.4 kDa p 11.0 68 0.0023 23.7 0.6 20 277-296 63-82 (95)
9 1zoq_C CREB-binding protein, i 10.8 1E+02 0.0034 19.5 1.2 20 15-34 17-36 (47)
10 2kgn_A Protein STE5; MAPKKK, S 8.1 65 0.0022 17.3 -0.4 8 212-219 2-9 (26)
No 1
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=32.95 E-value=10 Score=23.87 Aligned_cols=24 Identities=29% Similarity=0.485 Sum_probs=19.4
Q ss_pred HhhccCccccccchhhhhhhhhccc
Q 020766 280 YYVCKSYHHQEIDKIALHDHLGGYL 304 (321)
Q Consensus 280 Y~~CK~~~~E~id~~~l~~~l~~~~ 304 (321)
|..|+.=+ +-+-.+++-||||++-
T Consensus 17 YRvC~~Cg-kPi~lsAIvdHLenhC 40 (44)
T 2lo3_A 17 YRVCEKCG-KPLALTAIVDHLENHC 40 (44)
T ss_dssp EEECTTTC-CEEETTTHHHHHHHCC
T ss_pred chhhcccC-CcchHHHHHHHHHHHh
Confidence 67777764 7888999999999874
No 2
>1d8j_A General transcription factor TFIIE-beta; winged helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.5.18 PDB: 1d8k_A
Probab=29.61 E-value=20 Score=25.95 Aligned_cols=12 Identities=33% Similarity=0.492 Sum_probs=10.4
Q ss_pred CCCCChHHHHHH
Q 020766 8 LQFLSIPDILRE 19 (321)
Q Consensus 8 LrpL~~~~Il~e 19 (321)
--|+++.|||+|
T Consensus 29 ~~PltL~EILde 40 (81)
T 1d8j_A 29 THPLTLDEILDE 40 (81)
T ss_dssp CSCBCHHHHHHH
T ss_pred CCCccHHHHHHH
Confidence 457999999999
No 3
>2lf6_A Effector protein hopab1; type III effector, structural genomics, PSI-biology, protein structure initiative; NMR {Pseudomonas syringae PV}
Probab=29.43 E-value=10 Score=28.15 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=23.3
Q ss_pred ccccchhhhhhhhhcccCcccccCCCc
Q 020766 288 HQEIDKIALHDHLGGYLGEYVPLKSSI 314 (321)
Q Consensus 288 ~E~id~~~l~~~l~~~~~~y~~l~~~~ 314 (321)
.+++|+|.|...+|.|.-.-.|+|-|+
T Consensus 32 qqGvdmerLr~Al~~~i~~~~piP~Di 58 (101)
T 2lf6_A 32 QEGVDMERLRTSLGRYIMSLEPLPPDL 58 (101)
T ss_dssp HHTCCHHHHHHHHHHHHSSSCCCCHHH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCHHH
Confidence 479999999999999987778888665
No 4
>3tl8_B Effector protein hopab2; plant immunity, solanum lycopersicum, triggered immunity, bacterial pathogenesis, transferase-LIG complex; HET: TPO; 2.50A {Pseudomonas syringae PV}
Probab=27.16 E-value=13 Score=28.28 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=23.4
Q ss_pred ccccchhhhhhhhhcccCcccccCCCc
Q 020766 288 HQEIDKIALHDHLGGYLGEYVPLKSSI 314 (321)
Q Consensus 288 ~E~id~~~l~~~l~~~~~~y~~l~~~~ 314 (321)
.|++|+|.|...+|.|.-.-.|+|-||
T Consensus 49 qqGvdmerLraAle~~im~~~piP~Di 75 (117)
T 3tl8_B 49 QQGVNLEHLRTALERHVMQRLPIPLDI 75 (117)
T ss_dssp HTTCCHHHHHHHHHHHHTTCCCCCHHH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCHHH
Confidence 489999999999999987778888665
No 5
>2lf3_A Effector protein hopab3; type III effector, structural genomics, PSI-biology, protein structure initiative; NMR {Pseudomonas syringae PV}
Probab=23.39 E-value=12 Score=27.91 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=22.8
Q ss_pred ccccchhhhhhhhhcccCcccccCCCc
Q 020766 288 HQEIDKIALHDHLGGYLGEYVPLKSSI 314 (321)
Q Consensus 288 ~E~id~~~l~~~l~~~~~~y~~l~~~~ 314 (321)
.+++|+|.|...+|.|.-.-.|+|-||
T Consensus 43 qqGvdmerLraAle~~i~~~~piP~Di 69 (107)
T 2lf3_A 43 QNGINMEDLRAALEAYIVWLRPIPLDI 69 (107)
T ss_dssp HHTCCHHHHHHHHHHHHHTCCCCCHHH
T ss_pred HhCCCHHHHHHHHHHHHHhcCCCCHHH
Confidence 479999999999999986667888665
No 6
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=21.23 E-value=13 Score=23.79 Aligned_cols=19 Identities=26% Similarity=0.410 Sum_probs=11.7
Q ss_pred ccccchhhhhhhhhcccCcccccCCCcccc
Q 020766 288 HQEIDKIALHDHLGGYLGEYVPLKSSIQME 317 (321)
Q Consensus 288 ~E~id~~~l~~~l~~~~~~y~~l~~~~~~~ 317 (321)
.|+||.|-+.+ ||-|||.|
T Consensus 13 P~~VD~eVF~~-----------LP~dIQ~E 31 (48)
T 2kwv_A 13 PEGVDQEVFKQ-----------LPADIQEE 31 (48)
T ss_dssp CTTCCGGGTTT-----------SCHHHHHH
T ss_pred CCCCCHHHHHH-----------CcHHHHHH
Confidence 46677665544 66666655
No 7
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=11.11 E-value=2e+02 Score=24.75 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHhhccCcc-ccccch-----hhhhhhhhcccCcccccCCCc
Q 020766 261 LVGVLVIVNLVGLLVQSVFYYVCKSYH-HQEIDK-----IALHDHLGGYLGEYVPLKSSI 314 (321)
Q Consensus 261 ~~~l~~~~~l~~~vv~tV~Y~~CK~~~-~E~id~-----~~l~~~l~~~~~~y~~l~~~~ 314 (321)
....+.+.+++..++..-| .+.++.+ .|+-|. +++.+.+++...+...+++++
T Consensus 221 ~i~~~~~lnl~~aii~~~f-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l 279 (285)
T 3rvy_A 221 FVVTFVMINLVVAICVDAM-AILNQKEEQHIIDEVQSHEDNINNEIIKLREEIVELKELI 279 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHC-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHh
Confidence 4455566666666555443 3333322 222222 445555555555555555433
No 8
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=11.00 E-value=68 Score=23.70 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=13.0
Q ss_pred HhHHhhccCccccccchhhh
Q 020766 277 SVFYYVCKSYHHQEIDKIAL 296 (321)
Q Consensus 277 tV~Y~~CK~~~~E~id~~~l 296 (321)
-+=||+|+..|+--+..+.+
T Consensus 63 G~rYF~C~p~~G~Fvr~~~v 82 (95)
T 1lpl_A 63 GVRYFDCDPKYGGFVRPVDV 82 (95)
T ss_dssp TEECSCCCTTSEEEECGGGE
T ss_pred CEEEeEeCCCEEEEEcHHHc
Confidence 35699999888654444433
No 9
>1zoq_C CREB-binding protein, interferon regulatory factor 3; transcription regulation, transferase, transcription/transferase complex; 2.37A {Homo sapiens} SCOP: a.153.1.1 PDB: 1jjs_A
Probab=10.76 E-value=1e+02 Score=19.53 Aligned_cols=20 Identities=5% Similarity=0.099 Sum_probs=14.4
Q ss_pred HHHHHhhhhcccChhhHHHH
Q 020766 15 DILRESISIPRRAARTFYFI 34 (321)
Q Consensus 15 ~Il~ea~~i~~~n~~~f~~l 34 (321)
+==...++|+++||.++..+
T Consensus 17 ~qqqqvl~ILksnPqLMAAf 36 (47)
T 1zoq_C 17 QQQQQVLNILKSNPQLMAAF 36 (47)
T ss_dssp HHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHH
Confidence 33456788999999977543
No 10
>2kgn_A Protein STE5; MAPKKK, STE11 SAM, STE50 SAM, cytoplasm, pheromone response, phosphoprotein, signaling protein; NMR {Synthetic} PDB: 2l4u_A
Probab=8.14 E-value=65 Score=17.32 Aligned_cols=8 Identities=38% Similarity=0.514 Sum_probs=4.5
Q ss_pred hhcCCchh
Q 020766 212 LLKGKTRM 219 (321)
Q Consensus 212 L~rG~~~~ 219 (321)
|.||+.|.
T Consensus 2 lsrgkkwt 9 (26)
T 2kgn_A 2 LSRGKKWT 9 (26)
T ss_dssp HHHHGGGT
T ss_pred ccchhHHH
Confidence 45666664
Done!