Query 020766
Match_columns 321
No_of_seqs 134 out of 247
Neff 7.6
Searched_HMMs 13730
Date Mon Mar 25 07:52:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020766.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020766hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tova_ b.34.10.1 (A:) Cytoske 29.0 7 0.00051 27.6 0.6 29 277-311 66-94 (98)
2 d1br2a1 b.34.3.1 (A:34-79) Myo 20.1 9.1 0.00066 23.1 -0.3 14 305-318 32-46 (46)
3 d1d6za2 d.17.2.1 (A:91-185) Co 17.6 32 0.0023 23.5 2.3 24 4-28 2-25 (95)
4 d2cp0a1 b.34.10.1 (A:7-89) CLI 17.2 9.9 0.00072 25.9 -0.7 18 279-296 60-77 (83)
5 d1ygya1 c.2.1.4 (A:99-282) Pho 17.0 30 0.0022 26.6 2.2 16 286-301 134-149 (184)
6 d1whka_ b.34.10.1 (A:) Restin- 16.3 14 0.001 25.6 -0.1 19 278-296 62-80 (91)
7 d2coza1 b.34.10.1 (A:8-116) Ce 16.2 17 0.0012 26.0 0.4 21 277-297 72-92 (109)
8 d2e3ha1 b.34.10.1 (A:212-282) 15.8 14 0.0011 24.2 -0.1 18 278-295 49-66 (71)
9 d1n1jb_ a.22.1.3 (B:) Nuclear 12.3 1.5E+02 0.011 18.7 4.7 46 268-314 31-76 (78)
10 d2hqha1 b.34.10.1 (A:26-97) Dy 11.8 21 0.0015 23.5 -0.2 14 278-291 51-64 (72)
No 1
>d1tova_ b.34.10.1 (A:) Cytoskeleton-associated protein F53F4.3 {Caenorhabditis elegans [TaxId: 6239]}
Probab=28.99 E-value=7 Score=27.59 Aligned_cols=29 Identities=17% Similarity=0.435 Sum_probs=19.1
Q ss_pred HhHHhhccCccccccchhhhhhhhhcccCcccccC
Q 020766 277 SVFYYVCKSYHHQEIDKIALHDHLGGYLGEYVPLK 311 (321)
Q Consensus 277 tV~Y~~CK~~~~E~id~~~l~~~l~~~~~~y~~l~ 311 (321)
-+-||+||..|+--+..+.+. .++|-|+.
T Consensus 66 g~~YF~c~~~~G~Fv~~~~v~------~gd~P~~d 94 (98)
T d1tova_ 66 GVRYFDCDPKYGGFVRPVDVK------VGDFPELS 94 (98)
T ss_dssp TEECSCCCTTSEEEECGGGEE------ESCCCCCC
T ss_pred CEEEEEcCCCCEEEeChhheE------ECCCCCCC
Confidence 356999999997666555543 25555665
No 2
>d1br2a1 b.34.3.1 (A:34-79) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}
Probab=20.06 E-value=9.1 Score=23.05 Aligned_cols=14 Identities=43% Similarity=0.510 Sum_probs=11.0
Q ss_pred CcccccC-CCccccc
Q 020766 305 GEYVPLK-SSIQMEN 318 (321)
Q Consensus 305 ~~y~~l~-~~~~~~~ 318 (321)
|+-+-+| ||+|-+|
T Consensus 32 Gk~~tvkkddvq~MN 46 (46)
T d1br2a1 32 GKKVTLSKDDIQKMN 46 (46)
T ss_dssp CCEEEECSTTCEECC
T ss_pred CcEEEEcHHHcEecC
Confidence 5667888 9998776
No 3
>d1d6za2 d.17.2.1 (A:91-185) Copper amine oxidase, domains 1 and 2 {Escherichia coli [TaxId: 562]}
Probab=17.58 E-value=32 Score=23.51 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=18.9
Q ss_pred CCCCCCCCChHHHHHHhhhhcccCh
Q 020766 4 SPGELQFLSIPDILRESISIPRRAA 28 (321)
Q Consensus 4 ~~~~LrpL~~~~Il~ea~~i~~~n~ 28 (321)
-|+||-||+..+| +.+.+++|++.
T Consensus 2 ~PHPLDpLs~~EI-~~a~~ivr~~~ 25 (95)
T d1d6za2 2 RPHPLNALTADEI-KQAVEIVKASA 25 (95)
T ss_dssp SCCTTCCCCHHHH-HHHHHHHHTST
T ss_pred CCCCCCCCCHHHH-HHHHHHHHhcc
Confidence 4899999999988 66667777643
No 4
>d2cp0a1 b.34.10.1 (A:7-89) CLIP170-related 59kda protein CLIPR-59 (1500005P14Rik) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.22 E-value=9.9 Score=25.87 Aligned_cols=18 Identities=11% Similarity=0.277 Sum_probs=12.0
Q ss_pred HHhhccCccccccchhhh
Q 020766 279 FYYVCKSYHHQEIDKIAL 296 (321)
Q Consensus 279 ~Y~~CK~~~~E~id~~~l 296 (321)
=||+||..|+--+..+.+
T Consensus 60 rYF~C~~~~G~Fv~~~~v 77 (83)
T d2cp0a1 60 RYFICPPKQGLFASVSKI 77 (83)
T ss_dssp ECCCCSSSCEEEECGGGE
T ss_pred EEeecCCCceEEcCHHHc
Confidence 489999888655544433
No 5
>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=17.02 E-value=30 Score=26.55 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=13.5
Q ss_pred ccccccchhhhhhhhh
Q 020766 286 YHHQEIDKIALHDHLG 301 (321)
Q Consensus 286 ~~~E~id~~~l~~~l~ 301 (321)
.+++-+|.++|.+.|+
T Consensus 134 sRG~iVde~aL~~aL~ 149 (184)
T d1ygya1 134 ARGGLVDEAALADAIT 149 (184)
T ss_dssp SCTTSBCHHHHHHHHH
T ss_pred cchhhhhhHHHHHHHh
Confidence 4579999999999883
No 6
>d1whka_ b.34.10.1 (A:) Restin-like protein 2, Rsnl2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.30 E-value=14 Score=25.58 Aligned_cols=19 Identities=16% Similarity=0.272 Sum_probs=13.4
Q ss_pred hHHhhccCccccccchhhh
Q 020766 278 VFYYVCKSYHHQEIDKIAL 296 (321)
Q Consensus 278 V~Y~~CK~~~~E~id~~~l 296 (321)
+-||+||..|+.-+..+.+
T Consensus 62 ~~YF~C~~~~G~Fv~~~~v 80 (91)
T d1whka_ 62 KRYFTCKPNYGVLVRPSRV 80 (91)
T ss_dssp EECCCCSTTCCCEECGGGE
T ss_pred EEEeecCCCceEEeCHHHe
Confidence 4599999998765554444
No 7
>d2coza1 b.34.10.1 (A:8-116) Centrosome-associated protein 350 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.19 E-value=17 Score=25.97 Aligned_cols=21 Identities=19% Similarity=0.350 Sum_probs=15.6
Q ss_pred HhHHhhccCccccccchhhhh
Q 020766 277 SVFYYVCKSYHHQEIDKIALH 297 (321)
Q Consensus 277 tV~Y~~CK~~~~E~id~~~l~ 297 (321)
-+-||+||..|+--+..+.+.
T Consensus 72 G~~YF~C~~~~GiFv~~~~v~ 92 (109)
T d2coza1 72 GIAYFECKEKHGIFAPPQKIS 92 (109)
T ss_dssp TEECCCCCSSCEEEECGGGEE
T ss_pred CEEEEecCCCcEEEeCHHHcE
Confidence 367999999997766665554
No 8
>d2e3ha1 b.34.10.1 (A:212-282) CLIP-115 {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.82 E-value=14 Score=24.17 Aligned_cols=18 Identities=11% Similarity=0.087 Sum_probs=12.2
Q ss_pred hHHhhccCccccccchhh
Q 020766 278 VFYYVCKSYHHQEIDKIA 295 (321)
Q Consensus 278 V~Y~~CK~~~~E~id~~~ 295 (321)
+-||+||..|+--+..+.
T Consensus 49 ~~YF~c~~~~G~Fv~~~k 66 (71)
T d2e3ha1 49 TRYFQCQPKYGLFAPVHK 66 (71)
T ss_dssp EESCCCCTTCEEEEEGGG
T ss_pred EEEEecCCCCEEEeCHHH
Confidence 459999988865554443
No 9
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.35 E-value=1.5e+02 Score=18.66 Aligned_cols=46 Identities=2% Similarity=0.042 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhHHhhccCccccccchhhhhhhhhcccCcccccCCCc
Q 020766 268 VNLVGLLVQSVFYYVCKSYHHQEIDKIALHDHLGGYLGEYVPLKSSI 314 (321)
Q Consensus 268 ~~l~~~vv~tV~Y~~CK~~~~E~id~~~l~~~l~~~~~~y~~l~~~~ 314 (321)
+.+|---...--|..|+..+...+..+++.+-+++. .+|..|.|.+
T Consensus 31 ~E~Fi~~l~~~A~~~a~~~~rkti~~~dl~~av~~~-~~~~FL~d~v 76 (78)
T d1n1jb_ 31 AQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKF-DQFDFLIDIV 76 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTC-GGGGGGTTTS
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHhcC-ChhHHHHHhC
Confidence 334433334455778888877899999999999876 3677777544
No 10
>d2hqha1 b.34.10.1 (A:26-97) Dynactin 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.84 E-value=21 Score=23.47 Aligned_cols=14 Identities=21% Similarity=0.422 Sum_probs=9.6
Q ss_pred hHHhhccCcccccc
Q 020766 278 VFYYVCKSYHHQEI 291 (321)
Q Consensus 278 V~Y~~CK~~~~E~i 291 (321)
+=||+||..|+--+
T Consensus 51 ~~YF~C~~~~G~Fv 64 (72)
T d2hqha1 51 RKYFTCDEGHGIFV 64 (72)
T ss_dssp EESSCCCTTTEEEE
T ss_pred EEEEecCCCcEEEe
Confidence 34889998875433
Done!