Query 020767
Match_columns 321
No_of_seqs 197 out of 1404
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 05:00:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020767.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020767hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1546 Metacaspase involved i 100.0 9.5E-54 2.1E-58 385.2 25.8 294 4-316 60-361 (362)
2 PF00656 Peptidase_C14: Caspas 100.0 2.1E-35 4.5E-40 266.9 11.8 240 8-314 1-248 (248)
3 cd00032 CASc Caspase, interleu 99.8 4.9E-19 1.1E-23 160.6 19.8 222 1-307 4-236 (243)
4 smart00115 CASc Caspase, inter 99.8 3.5E-18 7.7E-23 154.8 20.8 216 4-306 5-231 (241)
5 PF01650 Peptidase_C13: Peptid 99.6 8.1E-15 1.8E-19 133.5 17.2 200 8-307 1-243 (256)
6 COG4249 Uncharacterized protei 99.6 4.7E-15 1E-19 141.4 12.7 209 6-294 2-284 (380)
7 PF14538 Raptor_N: Raptor N-te 98.5 9.8E-07 2.1E-11 74.4 9.5 103 28-151 43-151 (154)
8 KOG1348 Asparaginyl peptidases 98.5 5.6E-06 1.2E-10 77.2 14.7 129 4-152 42-214 (477)
9 KOG1349 Gpi-anchor transamidas 98.5 7.4E-06 1.6E-10 73.0 14.8 126 5-150 26-196 (309)
10 COG5206 GPI8 Glycosylphosphati 98.2 6.5E-05 1.4E-09 67.4 15.1 126 6-151 27-197 (382)
11 COG4249 Uncharacterized protei 97.8 3.8E-06 8.2E-11 80.7 -0.4 161 63-307 48-218 (380)
12 KOG1517 Guanine nucleotide bin 97.1 0.002 4.4E-08 67.6 8.5 103 28-151 139-247 (1387)
13 PF12770 CHAT: CHAT domain 97.0 0.0069 1.5E-07 55.7 11.2 109 11-148 82-202 (287)
14 COG0648 Nfo Endonuclease IV [D 84.4 3.3 7.2E-05 38.4 6.8 63 63-148 119-181 (280)
15 COG4995 Uncharacterized protei 81.9 7.1 0.00015 38.3 8.3 100 21-149 231-333 (420)
16 COG2379 GckA Putative glycerat 76.3 35 0.00076 33.1 10.8 81 5-96 35-127 (422)
17 PF03415 Peptidase_C11: Clostr 68.7 8.8 0.00019 37.5 5.1 79 61-149 77-160 (397)
18 PF06258 Mito_fiss_Elm1: Mitoc 68.7 20 0.00043 33.8 7.3 74 5-92 145-218 (311)
19 KOG1321 Protoheme ferro-lyase 68.4 21 0.00046 33.6 7.2 64 29-98 173-242 (395)
20 COG1791 Uncharacterized conser 57.6 50 0.0011 28.3 6.9 61 29-96 50-110 (181)
21 PF13660 DUF4147: Domain of un 52.7 37 0.0008 30.7 5.8 44 48-94 84-129 (238)
22 KOG3997 Major apurinic/apyrimi 51.4 26 0.00057 31.3 4.4 29 120-148 157-185 (281)
23 PF07521 RMMBL: RNA-metabolisi 48.9 15 0.00033 23.7 2.0 18 122-140 21-38 (43)
24 PF13768 VWA_3: von Willebrand 48.1 58 0.0013 26.5 6.0 46 48-94 2-47 (155)
25 COG1105 FruK Fructose-1-phosph 47.7 1.1E+02 0.0025 28.8 8.4 85 33-144 66-167 (310)
26 PF01364 Peptidase_C25: Peptid 47.5 29 0.00062 33.3 4.6 48 233-292 303-350 (378)
27 PRK06107 aspartate aminotransf 46.1 74 0.0016 30.6 7.3 30 119-148 183-212 (402)
28 PRK00809 hypothetical protein; 44.6 26 0.00056 29.1 3.3 22 73-94 30-52 (144)
29 cd01612 APG12_C Ubiquitin-like 44.0 95 0.0021 23.4 6.0 54 31-90 28-82 (87)
30 PRK01688 histidinol-phosphate 42.7 53 0.0011 31.0 5.6 109 26-147 54-188 (351)
31 PLN02994 1-aminocyclopropane-1 41.8 66 0.0014 26.9 5.4 48 28-86 95-146 (153)
32 PF01878 EVE: EVE domain; Int 41.5 22 0.00048 29.1 2.4 17 74-90 36-52 (143)
33 PF09827 CRISPR_Cas2: CRISPR a 40.6 79 0.0017 22.8 5.1 51 29-88 14-66 (78)
34 PF12070 DUF3550: Protein of u 40.1 1.4E+02 0.003 30.2 8.1 37 60-96 292-328 (513)
35 PF03568 Peptidase_C50: Peptid 38.4 61 0.0013 31.4 5.3 24 62-94 297-320 (383)
36 PF05066 HARE-HTH: HB1, ASXL, 37.0 34 0.00073 24.4 2.5 38 264-301 3-40 (72)
37 TIGR02806 clostrip clostripain 36.9 1.2E+02 0.0027 30.1 7.0 80 64-149 96-184 (476)
38 PF10264 Stork_head: Winged he 36.7 1E+02 0.0022 23.0 5.0 45 31-95 32-76 (80)
39 KOG3425 Uncharacterized conser 36.3 44 0.00095 27.0 3.2 58 66-137 10-68 (128)
40 PRK07550 hypothetical protein; 34.9 1.9E+02 0.0041 27.5 8.1 28 119-147 180-207 (386)
41 COG0657 Aes Esterase/lipase [L 34.6 2.1E+02 0.0047 26.2 8.2 47 10-56 111-161 (312)
42 PRK05957 aspartate aminotransf 33.5 2E+02 0.0043 27.4 8.1 30 119-149 177-206 (389)
43 cd00615 Orn_deC_like Ornithine 33.1 3E+02 0.0065 25.1 8.9 61 22-94 52-112 (294)
44 COG0079 HisC Histidinol-phosph 32.7 3.5E+02 0.0076 25.9 9.5 106 25-145 53-186 (356)
45 PF02572 CobA_CobO_BtuR: ATP:c 32.0 83 0.0018 27.0 4.5 53 64-137 78-132 (172)
46 PRK10886 DnaA initiator-associ 31.8 3.2E+02 0.007 23.8 8.3 74 7-93 41-121 (196)
47 COG2179 Predicted hydrolase of 31.6 60 0.0013 27.8 3.5 33 108-141 36-69 (175)
48 PRK09814 beta-1,6-galactofuran 31.4 1.2E+02 0.0025 28.4 5.9 53 33-91 23-75 (333)
49 cd00613 GDC-P Glycine cleavage 30.8 2.7E+02 0.0058 26.4 8.4 61 26-94 61-121 (398)
50 PF02698 DUF218: DUF218 domain 30.0 1.9E+02 0.0041 23.5 6.4 44 27-76 52-95 (155)
51 TIGR01573 cas2 CRISPR-associat 29.4 2.2E+02 0.0047 21.6 6.1 56 28-90 15-71 (95)
52 PRK07414 cob(I)yrinic acid a,c 29.2 1.3E+02 0.0028 26.0 5.2 53 64-137 97-151 (178)
53 COG2830 Uncharacterized protei 28.6 47 0.001 28.4 2.4 39 78-117 7-45 (214)
54 PRK05986 cob(I)alamin adenolsy 28.3 1.3E+02 0.0028 26.3 5.2 53 64-137 97-151 (191)
55 PF07859 Abhydrolase_3: alpha/ 27.4 73 0.0016 27.1 3.5 45 11-55 31-79 (211)
56 TIGR01141 hisC histidinol-phos 27.3 1.9E+02 0.004 26.9 6.5 27 119-147 159-185 (346)
57 PF13709 DUF4159: Domain of un 27.0 1.1E+02 0.0024 26.9 4.6 20 27-46 17-36 (207)
58 COG2947 Uncharacterized conser 26.5 57 0.0012 27.2 2.4 27 64-90 27-54 (156)
59 PF08541 ACP_syn_III_C: 3-Oxoa 25.9 91 0.002 22.9 3.4 55 38-95 27-83 (90)
60 COG1350 Predicted alternative 25.4 85 0.0018 30.0 3.6 34 63-96 384-419 (432)
61 COG2194 Predicted membrane-ass 25.3 86 0.0019 32.1 4.0 16 82-97 445-460 (555)
62 PF00994 MoCF_biosynth: Probab 25.3 2E+02 0.0042 23.3 5.6 46 29-86 17-62 (144)
63 KOG4530 Predicted flavoprotein 25.2 97 0.0021 26.4 3.6 30 65-94 103-132 (199)
64 TIGR03676 aRF1/eRF1 peptide ch 25.2 2.9E+02 0.0064 27.0 7.6 55 31-95 33-91 (403)
65 PF05991 NYN_YacP: YacP-like N 24.9 4.2E+02 0.0091 22.3 7.8 72 65-141 29-101 (166)
66 PRK00950 histidinol-phosphate 24.8 2.3E+02 0.005 26.5 6.7 45 32-86 72-116 (361)
67 TIGR00708 cobA cob(I)alamin ad 24.4 1.6E+02 0.0034 25.3 4.9 52 65-137 80-133 (173)
68 PRK02308 uvsE putative UV dama 24.3 3.8E+02 0.0082 25.1 7.9 111 23-148 85-217 (303)
69 PTZ00380 microtubule-associate 24.1 1.6E+02 0.0036 23.7 4.6 53 32-91 54-107 (121)
70 PF14338 Mrr_N: Mrr N-terminal 23.5 1.5E+02 0.0032 22.2 4.2 29 264-292 5-33 (92)
71 TIGR03402 FeS_nifS cysteine de 22.4 3.5E+02 0.0077 25.4 7.5 56 29-92 42-97 (379)
72 KOG4044 Mitochondrial associat 22.3 81 0.0018 27.0 2.6 23 129-151 123-145 (201)
73 cd06259 YdcF-like YdcF-like. Y 22.1 2.8E+02 0.006 22.3 5.9 45 27-77 49-93 (150)
74 PF06342 DUF1057: Alpha/beta h 22.0 1.7E+02 0.0038 27.3 4.9 30 5-40 31-60 (297)
75 PRK08361 aspartate aminotransf 21.8 5E+02 0.011 24.6 8.5 50 33-93 78-129 (391)
76 COG3510 CmcI Cephalosporin hyd 21.7 4.6E+02 0.0099 23.3 7.1 74 5-87 95-179 (237)
77 PRK09257 aromatic amino acid a 21.6 5.5E+02 0.012 24.4 8.7 48 32-87 76-126 (396)
78 TIGR02379 ECA_wecE TDP-4-keto- 21.5 2.1E+02 0.0046 27.4 5.8 49 31-91 33-81 (376)
79 COG2160 AraA L-arabinose isome 21.5 3.1E+02 0.0066 27.0 6.6 79 1-87 1-81 (497)
80 PRK06108 aspartate aminotransf 21.4 5.5E+02 0.012 24.0 8.7 49 32-91 68-118 (382)
81 cd06446 Trp-synth_B Tryptophan 21.4 3E+02 0.0065 26.3 6.8 29 68-96 334-362 (365)
82 PRK07116 flavodoxin; Provision 21.3 58 0.0013 27.1 1.6 14 82-95 4-17 (160)
83 TIGR00263 trpB tryptophan synt 21.0 3.1E+02 0.0066 26.5 6.8 32 65-96 347-378 (385)
84 PF06720 Phi-29_GP16_7: Bacter 20.8 33 0.00071 27.2 0.0 14 83-96 13-26 (130)
85 PRK13355 bifunctional HTH-doma 20.6 3E+02 0.0064 27.6 6.9 43 33-86 193-237 (517)
86 PRK05942 aspartate aminotransf 20.6 4.7E+02 0.01 24.9 8.0 49 33-91 81-131 (394)
87 cd06502 TA_like Low-specificit 20.4 6.6E+02 0.014 22.9 9.9 88 29-130 32-119 (338)
88 PRK05569 flavodoxin; Provision 20.3 64 0.0014 25.9 1.7 14 82-95 3-16 (141)
89 PTZ00377 alanine aminotransfer 20.2 3.8E+02 0.0082 26.5 7.5 45 32-86 122-168 (481)
90 PRK07681 aspartate aminotransf 20.1 4E+02 0.0088 25.4 7.5 30 119-149 183-212 (399)
91 KOG1552 Predicted alpha/beta h 20.1 1.7E+02 0.0037 26.8 4.4 16 63-78 111-126 (258)
92 PF08357 SEFIR: SEFIR domain; 20.1 1.4E+02 0.0031 24.2 3.7 51 28-89 15-67 (150)
93 TIGR01979 sufS cysteine desulf 20.1 3.5E+02 0.0075 25.7 7.0 55 31-93 64-120 (403)
No 1
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.5e-54 Score=385.19 Aligned_cols=294 Identities=48% Similarity=0.729 Sum_probs=253.9
Q ss_pred CCCcEEEEEEeecCCCCCCCCcchHHHHHHHHHHHHHhcCCCCCcEEEeeCCCCCC-CCCcHHHHHHHHHHHHHhCCCCC
Q 020767 4 KGSKRIAVLVGCNYPNTKNELHGCINDVLAMRDVIINRFGFDPNHIELLTDAPGSS-VMPTGANIKAALDRMVSKAEAGD 82 (321)
Q Consensus 4 ~~~~~~Al~IGi~y~~~~~~L~~~~~Da~~~~~~L~~~~gf~~~~i~~L~d~~~~~-~~~T~~~I~~~l~~l~~~~~~~D 82 (321)
..++|+||||||||.++...|+||+|||..|+++|.++|||+.++|.+|+|.+.+. ..||++||++||+||++.+++||
T Consensus 60 ~~gkrrAvLiGINY~gTk~ELrGCINDv~~M~~~Lv~rfGFs~ddI~~LtDt~~s~~~~PT~~Nir~Al~wLV~~aq~gD 139 (362)
T KOG1546|consen 60 MAGKRRAVLIGINYPGTKNELRGCINDVHRMRKLLVERFGFSEDDILMLTDTDESPVRIPTGKNIRRALRWLVESAQPGD 139 (362)
T ss_pred ccccceEEEEeecCCCcHHHHhhhHHHHHHHHHHHHHhhCCChhheEEEecCCCcccccCcHHHHHHHHHHHHhcCCCCC
Confidence 35688899999999999999999999999999999999999999999999998655 88999999999999999999999
Q ss_pred EEEEEeeCCCCccCCCCCCCCCCCCCceEEcCCCC----CCcHHHHHHHHHhCCCCCeEEEEEeCCCCCccccccccccC
Q 020767 83 VLLFHYSGHGTRIPSLRPIWPFRQQDEAIVPCDFN----LITDLDFRQLVNRLPKGASFTVFSDSCHSGGLIDKAKEQIG 158 (321)
Q Consensus 83 ~v~~yfSGHG~~~~~~~~g~~~~~~~~~l~p~D~~----~i~~~~l~~ll~~l~~~~~v~~ilD~C~SG~~~~~~~~~~~ 158 (321)
.+||||||||.+.++. +|++.+|+|++|+|.|.+ .|.++.++.+++++++|+++++|+|+||||++++.++...
T Consensus 140 ~LvfHYSGHGtr~~~~-~gDe~dG~DE~I~P~D~~t~G~iIdDe~~r~lV~plp~G~~lt~I~DSCHSGgliDlp~i~~- 217 (362)
T KOG1546|consen 140 SLVFHYSGHGTRQPDT-NGDEVDGYDETIVPCDHNTQGPIIDDEIFRILVRPLPKGCKLTAISDSCHSGGLIDLPEIER- 217 (362)
T ss_pred EEEEEecCCCCcCCCC-CCCCCCCCcceeecccccccccccchHHHHHHHhccCCCceEEEEeecccCCCcccchhhee-
Confidence 9999999999999996 888999999999999998 6888889999999999999999999999999999764321
Q ss_pred CCCccchhcccCCCCCCCCCCChhhHHHhhhhhccCCC---CcccchhhhhccCchhhhhhcCccchhhhhhccCCCCCC
Q 020767 159 PSSNIDQLRTKQSPAFRPKTIPFQSILEHLSSVTKINT---SDIGTHLLEFFGVDASLRFRLAPNEVMDLFESWSLKPDD 235 (321)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~r~~p~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~a~~~~~~~~~~~~~~~~~~~~~~~~ 235 (321)
+ ..-.+.|++|++..++.++..+|.+. ..+...+.+.||.++++..... ...+.........+
T Consensus 218 ---------~--~~~ir~~~l~~e~~~d~l~~~tG~~~ge~~~i~~~l~d~f~~dts~~~~~~---~~~~~~~~~~~~d~ 283 (362)
T KOG1546|consen 218 ---------T--KGVIRNRNLPWEDHRDLLKAQTGTDGGEVGKIRGCLDDIFGEDTSPLPNGT---IGDLGRQLKDSHDN 283 (362)
T ss_pred ---------c--ccccccCccchHHhHHHHHhhcCCCCceeeeeecchhhhhcccCCCCCCcc---hhhhhhhcccCCCC
Confidence 1 11246789999998888888887444 3567888889998886522111 01112222456799
Q ss_pred eEEEeecCCCCcccccCCCCCCCchhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCcccccccCccccCccc
Q 020767 236 GILLSGCQANETSADMSPMESGGKAYGAFSNAVQRVLKENSGPLSNKEVVLMARKILKEQRFEQHPCLYCSDENAAATFL 315 (321)
Q Consensus 236 ~~~lsAc~~~e~A~E~~~~~~~~~~~G~FT~aLl~~L~~~~~~~t~~~L~~~v~~~v~~~~~~Q~P~l~~~~~~~~~~f~ 315 (321)
.|+||.|+++|+|.+... .+...|+|++|+.++|.++++.++.++|+-+++..++..++.|.|+||++++..+..|+
T Consensus 284 ~illSgcqadqtSad~~~---~G~~~gAms~Aiq~i~~~n~g~~~~~~lvl~~~~~~~~~g~sQ~P~L~csd~~~~~~~~ 360 (362)
T KOG1546|consen 284 GILLSGCQADQTSADAST---YGHLYGAMSNAIQEILTENKGRITNKLLVLRARGALKKQGFSQEPGLYCSDPFDVAPFI 360 (362)
T ss_pred ceEEeccccccccccccc---CCcchhHHHHHHHHHHhcCcccchhHHHHHHHhhhhhccCcccCccccCCcccccccee
Confidence 999999999999999987 47779999999999999998888999999999999999999999999999998888886
Q ss_pred c
Q 020767 316 L 316 (321)
Q Consensus 316 ~ 316 (321)
.
T Consensus 361 ~ 361 (362)
T KOG1546|consen 361 C 361 (362)
T ss_pred c
Confidence 4
No 2
>PF00656 Peptidase_C14: Caspase domain; InterPro: IPR011600 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of sequences represent the p20 (20kDa) and p10 (10kDa) subunits of caspases, which together form the catalytic domain of the caspase and are derived from the p45 (45 kDa) precursor (IPR002398 from INTERPRO) []. Caspases (Cysteine-dependent ASPartyl-specific proteASE) are cysteine peptidases that belong to the MEROPS peptidase family C14 (caspase family, clan CD) based on the architecture of their catalytic dyad or triad []. Caspases are tightly regulated proteins that require zymogen activation to become active, and once active can be regulated by caspase inhibitors. Activated caspases act as cysteine proteases, using the sulphydryl group of a cysteine side chain for catalysing peptide bond cleavage at aspartyl residues in their substrates. The catalytic cysteine and histidine residues are on the p20 subunit after cleavage of the p45 precursor. Caspases are mainly involved in mediating cell death (apoptosis) [, , ]. They have two main roles within the apoptosis cascade: as initiators that trigger the cell death process, and as effectors of the process itself. Caspase-mediated apoptosis follows two main pathways, one extrinsic and the other intrinsic or mitochondrial-mediated. The extrinsic pathway involves the stimulation of various TNF (tumour necrosis factor) cell surface receptors on cells targeted to die by various TNF cytokines that are produced by cells such as cytotoxic T cells. The activated receptor transmits the signal to the cytoplasm by recruiting FADD, which forms a death-inducing signalling complex (DISC) with caspase-8. The subsequent activation of caspase-8 initiates the apoptosis cascade involving caspases 3, 4, 6, 7, 9 and 10. The intrinsic pathway arises from signals that originate within the cell as a consequence of cellular stress or DNA damage. The stimulation or inhibition of different Bcl-2 family receptors results in the leakage of cytochrome c from the mitochondria, and the formation of an apoptosome composed of cytochrome c, Apaf1 and caspase-9. The subsequent activation of caspase-9 initiates the apoptosis cascade involving caspases 3 and 7, among others. At the end of the cascade, caspases act on a variety of signal transduction proteins, cytoskeletal and nuclear proteins, chromatin-modifying proteins, DNA repair proteins and endonucleases that destroy the cell by disintegrating its contents, including its DNA. The different caspases have different domain architectures depending upon where they fit into the apoptosis cascades, however they all carry the catalytic p10 and p20 subunits. Caspases can have roles other than in apoptosis, such as caspase-1 (interleukin-1 beta convertase) (3.4.22.36 from EC), which is involved in the inflammatory process. The activation of apoptosis can sometimes lead to caspase-1 activation, providing a link between apoptosis and inflammation, such as during the targeting of infected cells. Caspases may also be involved in cell differentiation [].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1M72_C 2NN3_C 3V4L_A 3IBF_B 2QLF_D 2QLB_C 3IBC_B 2QL9_A 3R5K_B 3H1P_A ....
Probab=100.00 E-value=2.1e-35 Score=266.87 Aligned_cols=240 Identities=31% Similarity=0.432 Sum_probs=173.8
Q ss_pred EEEEEEeecCCCCCCCCcchHHHHHHHHHHHHHhcCCCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEE
Q 020767 8 RIAVLVGCNYPNTKNELHGCINDVLAMRDVIINRFGFDPNHIELLTDAPGSSVMPTGANIKAALDRMVSKAEAGDVLLFH 87 (321)
Q Consensus 8 ~~Al~IGi~y~~~~~~L~~~~~Da~~~~~~L~~~~gf~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~D~v~~y 87 (321)
++||||||++|+...+|++|++|++.|+++| +.+||+..+| +.++ ||+++|+++|+++....+++|.++||
T Consensus 1 ~~AliIg~~~y~~~~~L~~~~~D~~~~~~~L-~~~gf~~~~~--l~~~------~t~~~i~~~l~~l~~~~~~~D~~~~y 71 (248)
T PF00656_consen 1 KRALIIGVNYYQNPPPLPGAVNDAEAMAEAL-EKLGFDVENI--LIDN------ATRANILKALRELLQRAQPGDSVVFY 71 (248)
T ss_dssp EEEEEEEESSTSSTCHCTTHHHHHHHHHHHH-HHTTEEEEEE--EEES------SSHHHHHHHHHHHHTSGGTCSEEEEE
T ss_pred CEEEEEEeeCCCCCCCCCCHHHHHHHHHHHH-HHcCCceeec--cccc------hHHHHHHHHHhhhhccCCCCCeeEEE
Confidence 6999999998888799999999999999999 5689998776 4443 79999999999999988899999999
Q ss_pred eeCCCCccCCCCCCCCCCCCCceEEcCCCCCCcHHHHHHHHHh-CCCCCeEEEEEeCCCCCccccccccccCCCCccchh
Q 020767 88 YSGHGTRIPSLRPIWPFRQQDEAIVPCDFNLITDLDFRQLVNR-LPKGASFTVFSDSCHSGGLIDKAKEQIGPSSNIDQL 166 (321)
Q Consensus 88 fSGHG~~~~~~~~g~~~~~~~~~l~p~D~~~i~~~~l~~ll~~-l~~~~~v~~ilD~C~SG~~~~~~~~~~~~~~~~~~~ 166 (321)
|||||.+.++. .++...+.+.+++|.|.+.+...+|..++.. ++...+ ++||||||||.+.+..........
T Consensus 72 fsGHG~~~~~~-~~~~~~~~d~~~~~~d~~~~~~~~l~~~~~~~~~~~~k-~~ilD~C~sg~~~~~~~~~~~~~~----- 144 (248)
T PF00656_consen 72 FSGHGIQVDGE-GGDEDSGYDGYLLPLDANLILDDELRDLLCKSLPKKPK-LFILDCCRSGGFIDGLSSSSGESS----- 144 (248)
T ss_dssp EESEEETETTC-CSTEEEETSSEEEEHHHHEEHHHHTSTTTTGGGTTS-E-EEEEESESSSBTBCEEEEEESSST-----
T ss_pred EeccccccCCc-cCcccccccceeeecchhhhHHHHHhhhhhhhccCCcc-EEeeccccCCccCCcccccccccc-----
Confidence 99999886653 2333335578888887665566777777766 655556 999999999998876432211100
Q ss_pred cccCCCCCCCCCCChhhHHHhhhhhccCCCCcccchhhhhccCchhhhhhcCccchhhhhhccCCCCCCeEEEeecCCCC
Q 020767 167 RTKQSPAFRPKTIPFQSILEHLSSVTKINTSDIGTHLLEFFGVDASLRFRLAPNEVMDLFESWSLKPDDGILLSGCQANE 246 (321)
Q Consensus 167 ~~~~~~~~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lsAc~~~e 246 (321)
.+..+ .. .. .... ... ... ....+.+.++++||.++|
T Consensus 145 ---------~~~~~--~~----~~--~~~~--~~~----------------~~~--------~~~~~~~~~~~~as~~~~ 181 (248)
T PF00656_consen 145 ---------KREER--KL----SS--SIPP--EDP----------------NRS--------DVPSPSGFIVLSASRPGQ 181 (248)
T ss_dssp ---------SS-EE--CH----CC--CCCC--SSC----------------CSE--------EEETTTSEEEEESSSTTB
T ss_pred ---------ccccc--cc----cc--cccc--ccc----------------ccc--------cccCCCCcEEEEeccccc
Confidence 00000 00 00 0000 000 000 023567899999999999
Q ss_pred cccccCCCCCCCchhhHHHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHHhCCCCCcccccccCccccCcc
Q 020767 247 TSADMSPMESGGKAYGAFSNAVQRVLKENS-------GPLSNKEVVLMARKILKEQRFEQHPCLYCSDENAAATF 314 (321)
Q Consensus 247 ~A~E~~~~~~~~~~~G~FT~aLl~~L~~~~-------~~~t~~~L~~~v~~~v~~~~~~Q~P~l~~~~~~~~~~f 314 (321)
+|+|.. ...+|+||++|+++|++.. ..+++.+++.++.+.+. ..|+|+++.+....+.-|
T Consensus 182 ~s~e~~-----~~~~g~ft~~L~~~L~~~~~~~~~~~~~~~l~~~~~~v~~~~~---~~Q~P~~~~s~~~~~~~f 248 (248)
T PF00656_consen 182 TSYEDS-----PGSGGLFTYALLEALKGNAADDPNQSWDELLEELLTEVNQKVA---REQTPQFSCSTLTKDLYF 248 (248)
T ss_dssp CEEEEC-----TTTEEHHHHHHHHHHHHHTTTSTTCCTTSBHHHHHHHHHHHHH---SBEEEEEEEEESSSBEBS
T ss_pred eeeccc-----CccCHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHhHCC---CceeCeeeeECCccccCC
Confidence 999973 4689999999999997641 24788899999988887 589999987765444433
No 3
>cd00032 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues; Cysteine-dependent aspartate-directed proteases that mediate programmed cell death (apoptosis). Caspases are synthesized as inactive zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologs.
Probab=99.83 E-value=4.9e-19 Score=160.62 Aligned_cols=222 Identities=16% Similarity=0.203 Sum_probs=159.0
Q ss_pred CCCCCCcEEEEEEeec-CCCCCCCCcchHHHHHHHHHHHHHhcCCCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHH-hC
Q 020767 1 METKGSKRIAVLVGCN-YPNTKNELHGCINDVLAMRDVIINRFGFDPNHIELLTDAPGSSVMPTGANIKAALDRMVS-KA 78 (321)
Q Consensus 1 ~~~~~~~~~Al~IGi~-y~~~~~~L~~~~~Da~~~~~~L~~~~gf~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~-~~ 78 (321)
|+.. ++++|||||+. |.....++.|+.+|++.|+++|++ +||. |.+..| +|+..|.++|+++.+ +.
T Consensus 4 m~~~-~~g~aLII~n~~f~~~~~~r~g~~~D~~~l~~~f~~-lgF~---V~~~~n-------lt~~~~~~~l~~f~~~~~ 71 (243)
T cd00032 4 MNSK-RRGLALIINNENFDKGLKDRDGTDVDAENLTKLFES-LGYE---VEVKNN-------LTAEEILEELKEFASPDH 71 (243)
T ss_pred CCCC-CCCEEEEEechhcCCCCCCCCChHHHHHHHHHHHHH-CCCE---EEEeCC-------CCHHHHHHHHHHHHhccC
Confidence 3433 78899999997 544368999999999999999986 9996 777777 699999999999985 77
Q ss_pred CCCCEEEEEeeCCCCccCCCCCCCCCCCCCceEEcCCCCCCcHHHHHHHHHh--CC--CCCeEEEEEeCCCCCccccccc
Q 020767 79 EAGDVLLFHYSGHGTRIPSLRPIWPFRQQDEAIVPCDFNLITDLDFRQLVNR--LP--KGASFTVFSDSCHSGGLIDKAK 154 (321)
Q Consensus 79 ~~~D~v~~yfSGHG~~~~~~~~g~~~~~~~~~l~p~D~~~i~~~~l~~ll~~--l~--~~~~v~~ilD~C~SG~~~~~~~ 154 (321)
+..|.++|||+|||.. .++++.|...++.++|.+.+.. .+ .++-.++|+|+|+...+.....
T Consensus 72 ~~~d~~v~~~~sHG~~--------------~~l~~~D~~~v~l~~i~~~f~~~~~~sl~~kPKl~~iqACRg~~~~~~~~ 137 (243)
T cd00032 72 SDSDSFVCVILSHGEE--------------GGIYGTDGDVVPIDEITSLFNGDNCPSLAGKPKLFFIQACRGDELDLGVE 137 (243)
T ss_pred CCCCeeEEEECCCCCC--------------CEEEEecCcEEEHHHHHHhhccCCCccccCCCcEEEEECCCCCcCCCcee
Confidence 8899999999999965 3788999877777788777752 22 2344589999999665433210
Q ss_pred cccCCCCccchhcccCCCCCCCCCCChhhHHHhhhhhccCCCCcccchhhhhccCchhhhhhcCccchhhhhhccCCCCC
Q 020767 155 EQIGPSSNIDQLRTKQSPAFRPKTIPFQSILEHLSSVTKINTSDIGTHLLEFFGVDASLRFRLAPNEVMDLFESWSLKPD 234 (321)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~~~~~~~~~~~ 234 (321)
. ...+..... .. ..+...... ......
T Consensus 138 ~---------------------~~~~~~~~~---~~---------------~~~~~~~~~--------------~~p~~~ 164 (243)
T cd00032 138 V---------------------DSGADEPPD---VE---------------TEAEDDAVQ--------------TIPVEA 164 (243)
T ss_pred c---------------------cCccccccc---cc---------------ccccccccc--------------CCCCcc
Confidence 0 000000000 00 000000000 022456
Q ss_pred CeEEEeecCCCCcccccCCCCCCCchhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC-C----CCCcccccccC
Q 020767 235 DGILLSGCQANETSADMSPMESGGKAYGAFSNAVQRVLKENSGPLSNKEVVLMARKILKEQ-R----FEQHPCLYCSD 307 (321)
Q Consensus 235 ~~~~lsAc~~~e~A~E~~~~~~~~~~~G~FT~aLl~~L~~~~~~~t~~~L~~~v~~~v~~~-~----~~Q~P~l~~~~ 307 (321)
+.++..|+.++..|++.. ..++.|+.+|++.|.+........+++.+|+..|... . .+|.|+..+..
T Consensus 165 d~lv~ysT~pG~~a~r~~------~~gS~fi~~l~~~l~~~~~~~~l~~il~~V~~~V~~~~~~~~~~kQ~P~~~stL 236 (243)
T cd00032 165 DFLVAYSTVPGYVSWRNT------KKGSWFIQSLCQVLRKYAHSLDLLDILTKVNRKVAEKFESVNGKKQMPCFRSTL 236 (243)
T ss_pred cEEEEecCCCCeEeecCC------CCCCEeHHHHHHHHHHhCCCCcHHHHHHHHHHHHhhhhccCCCceeCCcccccc
Confidence 777888889999999754 3579999999999988665578999999999988652 2 68999997654
No 4
>smart00115 CASc Caspase, interleukin-1 beta converting enzyme (ICE) homologues. Cysteine aspartases that mediate programmed cell death (apoptosis). Caspases are synthesised as zymogens and activated by proteolysis of the peptide backbone adjacent to an aspartate. The resulting two subunits associate to form an (alpha)2(beta)2-tetramer which is the active enzyme. Activation of caspases can be mediated by other caspase homologues.
Probab=99.81 E-value=3.5e-18 Score=154.79 Aligned_cols=216 Identities=14% Similarity=0.149 Sum_probs=156.1
Q ss_pred CCCcEEEEEEeecCCCCCCCCcchHHHHHHHHHHHHHhcCCCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHh--CCCC
Q 020767 4 KGSKRIAVLVGCNYPNTKNELHGCINDVLAMRDVIINRFGFDPNHIELLTDAPGSSVMPTGANIKAALDRMVSK--AEAG 81 (321)
Q Consensus 4 ~~~~~~Al~IGi~y~~~~~~L~~~~~Da~~~~~~L~~~~gf~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~--~~~~ 81 (321)
..++++|||||+..|....+++|+.+|++.|+++|++ +||. |.+..| +|+..|.++|+++.++ .+..
T Consensus 5 ~~p~g~alII~n~~f~~~~~r~g~~~D~~~l~~~f~~-lgF~---V~~~~d-------lt~~em~~~l~~~~~~~~~~~~ 73 (241)
T smart00115 5 SKPRGLALIINNENFHSLPRRNGTDVDAENLTELFQS-LGYE---VHVKNN-------LTAEEMLEELKEFAERPEHSDS 73 (241)
T ss_pred CCCCcEEEEEECccCCCCcCCCCcHHHHHHHHHHHHH-CCCE---EEEecC-------CCHHHHHHHHHHHHhccccCCC
Confidence 3478899999997555578999999999999999985 9997 777777 6999999999999875 4578
Q ss_pred CEEEEEeeCCCCccCCCCCCCCCCCCCceEEcCCCCCCcHHHHHHHHHh--CC--CCCeEEEEEeCCCCCcccccccccc
Q 020767 82 DVLLFHYSGHGTRIPSLRPIWPFRQQDEAIVPCDFNLITDLDFRQLVNR--LP--KGASFTVFSDSCHSGGLIDKAKEQI 157 (321)
Q Consensus 82 D~v~~yfSGHG~~~~~~~~g~~~~~~~~~l~p~D~~~i~~~~l~~ll~~--l~--~~~~v~~ilD~C~SG~~~~~~~~~~ 157 (321)
|.++|||+|||.. .++++.|...++.++|...+.. .+ .++-.++|+|+|+...+.....
T Consensus 74 d~~v~~~~sHG~~--------------~~l~~~D~~~v~l~~i~~~f~~~~c~~L~~kPKlffiqACRg~~~~~g~~--- 136 (241)
T smart00115 74 DSFVCVLLSHGEE--------------GGIYGTDHSPLPLDEIFSLFNGDNCPSLAGKPKLFFIQACRGDELDGGVP--- 136 (241)
T ss_pred CEEEEEEcCCCCC--------------CeEEEecCCEEEHHHHHHhccccCChhhcCCCcEEEEeCCCCCCCCCCee---
Confidence 9999999999953 4799999887777778777732 11 2344589999998543321100
Q ss_pred CCCCccchhcccCCCCCCCCCCChhhHHHhhhhhccCCCCcccchhhhhccCchhhhhhcCccchhhhhhccCCCCCCeE
Q 020767 158 GPSSNIDQLRTKQSPAFRPKTIPFQSILEHLSSVTKINTSDIGTHLLEFFGVDASLRFRLAPNEVMDLFESWSLKPDDGI 237 (321)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (321)
.+..+...... ... +... ......+.+
T Consensus 137 ------------------~~~~~~~~~~~------~~~--------------~~~~---------------~~p~~~D~l 163 (241)
T smart00115 137 ------------------VEDDVDDPPTE------FED--------------DAIY---------------KIPVEADFL 163 (241)
T ss_pred ------------------ccccccccccc------ccc--------------cccc---------------cCCCcCcEE
Confidence 00000000000 000 0000 022456788
Q ss_pred EEeecCCCCcccccCCCCCCCchhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC-----CCCCccccccc
Q 020767 238 LLSGCQANETSADMSPMESGGKAYGAFSNAVQRVLKENSGPLSNKEVVLMARKILKEQ-----RFEQHPCLYCS 306 (321)
Q Consensus 238 ~lsAc~~~e~A~E~~~~~~~~~~~G~FT~aLl~~L~~~~~~~t~~~L~~~v~~~v~~~-----~~~Q~P~l~~~ 306 (321)
+..|+.++..|++.. ..++.|+.+|++.|++.+...+..+++.+|+..|... +.+|.|+..+.
T Consensus 164 i~ysT~pG~va~r~~------~~gS~fi~~L~~~l~~~~~~~~l~~ilt~V~~~V~~~~~~~~~~kQ~p~~~st 231 (241)
T smart00115 164 AAYSTTPGYVSWRNP------TRGSWFIQSLCQVLKEYARSLDLLDILTEVNRKVAVKFESVHAKKQMPTIESM 231 (241)
T ss_pred EEEeCCCCeEeecCC------CCCchHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhcccCCcEeCCccEee
Confidence 888889999999754 3579999999999998655579999999999988652 36899999876
No 5
>PF01650 Peptidase_C13: Peptidase C13 family; InterPro: IPR001096 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C13 (legumain family, clan CD). A type example is legumain from Canavalia ensiformis (Jack bean, Horse bean). The blood fluke parasite Schistosoma mansoni has two cysteine proteases in its digestive tract, one a cathepsin B-like protease, the other termed hemoglobinase [, ]. The latter has been hard to purify, free of cathepsin B, and expressed forms in Escherichia coli prove to be inactive, suggesting that hemoglobinase may act in association with cathepsin B [, ]. Plant vacuolar processing enzyme and legumain from legumes [] have been shown to have sequence and functional similarity to hemoglobinase. The catalytic residues of the family are currently unknown, but sequence alignments reveal one totally conserved cysteine and two totally conserved histidines.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis
Probab=99.64 E-value=8.1e-15 Score=133.52 Aligned_cols=200 Identities=17% Similarity=0.132 Sum_probs=137.4
Q ss_pred EEEEEEeec-CCCCCCCCcchHHHHHHHHHHHHHhcCCCCCcEEEeeCCCC----C------------------------
Q 020767 8 RIAVLVGCN-YPNTKNELHGCINDVLAMRDVIINRFGFDPNHIELLTDAPG----S------------------------ 58 (321)
Q Consensus 8 ~~Al~IGi~-y~~~~~~L~~~~~Da~~~~~~L~~~~gf~~~~i~~L~d~~~----~------------------------ 58 (321)
+|||+|+-+ ++.. -+- .+|+-.+.++|++ .|++++||.++..+.- .
T Consensus 1 ~wAvlvagS~~~~N---YRh-~ad~~~~Y~~l~~-~G~~~~~Iil~~~dd~a~~~~Np~~g~i~~~~~~~n~y~~~~iDY 75 (256)
T PF01650_consen 1 NWAVLVAGSNGWFN---YRH-QADVCHAYQLLKR-NGIPDENIILMMYDDIACNPRNPFPGKIFNDPDGTNVYKGVEIDY 75 (256)
T ss_pred CEEEEEeccCCcee---eeE-ehHHHHHHHHHHH-cCCCCceEEEEecCCccchhhCCCCceEEeCCCcccccCCccccc
Confidence 589999986 3322 222 4789999999997 9999999988875431 0
Q ss_pred -CCCCcHHHHHHHHHHHH-------HhCCCCCEEEEEeeCCCCccCCCCCCCCCCCCCceEEcCCCCCCcHHHHHHHHHh
Q 020767 59 -SVMPTGANIKAALDRMV-------SKAEAGDVLLFHYSGHGTRIPSLRPIWPFRQQDEAIVPCDFNLITDLDFRQLVNR 130 (321)
Q Consensus 59 -~~~~T~~~I~~~l~~l~-------~~~~~~D~v~~yfSGHG~~~~~~~~g~~~~~~~~~l~p~D~~~i~~~~l~~ll~~ 130 (321)
....|.+++++.|.--. -+..++|.|||||+|||... .+.-.+.+.|+..+|.++|+.
T Consensus 76 ~g~~v~~~~fl~vL~G~~~~~~~kvl~s~~~D~vfiy~~~HG~~~--------------~l~~~~~~~l~~~~L~~~L~~ 141 (256)
T PF01650_consen 76 RGEDVTPENFLNVLTGDKSVPSGKVLNSTENDNVFIYFTGHGGPG--------------FLKFPDGEELTADDLADALDK 141 (256)
T ss_pred cccccCHHHHHHHhcCCCCCCccccccCCCCCeEEEEEeccCCCC--------------cccCCCcccccHHHHHHHHHH
Confidence 12345566666654111 14568999999999999973 222225667899999999998
Q ss_pred CCCC---CeEEEEEeCCCCCccccccccccCCCCccchhcccCCCCCCCCCCChhhHHHhhhhhccCCCCcccchhhhhc
Q 020767 131 LPKG---ASFTVFSDSCHSGGLIDKAKEQIGPSSNIDQLRTKQSPAFRPKTIPFQSILEHLSSVTKINTSDIGTHLLEFF 207 (321)
Q Consensus 131 l~~~---~~v~~ilD~C~SG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (321)
+... +++++++|+|+||++.+.-
T Consensus 142 m~~~~~y~~lv~~veaC~SGs~~~~L------------------------------------------------------ 167 (256)
T PF01650_consen 142 MHEKKRYKKLVFVVEACYSGSFFEGL------------------------------------------------------ 167 (256)
T ss_pred HHhhCCcceEEEEEecccccchhhcc------------------------------------------------------
Confidence 8532 4589999999999986530
Q ss_pred cCchhhhhhcCccchhhhhhccCCCCCCeEEEeecCCCCcccccC--CCCCCCchhhHHHHHHHHHHHhCC-CCCCHHHH
Q 020767 208 GVDASLRFRLAPNEVMDLFESWSLKPDDGILLSGCQANETSADMS--PMESGGKAYGAFSNAVQRVLKENS-GPLSNKEV 284 (321)
Q Consensus 208 g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lsAc~~~e~A~E~~--~~~~~~~~~G~FT~aLl~~L~~~~-~~~t~~~L 284 (321)
....++++++||..+|.|+-.. ...-+.--.-.|++.+++-+...+ ...|..++
T Consensus 168 -----------------------~~~~nv~~iTAa~~~e~Sy~~~~~~~~~~~~l~d~fs~~~m~~~~~~~~~~~Tl~~~ 224 (256)
T PF01650_consen 168 -----------------------LKSPNVYVITAANADESSYGCYCSDDSIGTYLGDAFSYNWMEDSDSHPLSEETLDDQ 224 (256)
T ss_pred -----------------------CCCCCEEEEecCCcccccccccccccccccEeHHHHHHHhhhhhccCCccccCHHHH
Confidence 0123667889999999998551 111112223488999988887754 23689999
Q ss_pred HHHHHHHHHhCCCCCcccccccC
Q 020767 285 VLMARKILKEQRFEQHPCLYCSD 307 (321)
Q Consensus 285 ~~~v~~~v~~~~~~Q~P~l~~~~ 307 (321)
|+++++.+. ..+++.++..
T Consensus 225 f~~v~~~~~----~shv~~~gd~ 243 (256)
T PF01650_consen 225 FEYVKRKTT----GSHVQQYGDP 243 (256)
T ss_pred HHHHHHhcc----cchHHhcCCC
Confidence 999999875 4455555533
No 6
>COG4249 Uncharacterized protein containing caspase domain [General function prediction only]
Probab=99.61 E-value=4.7e-15 Score=141.39 Aligned_cols=209 Identities=20% Similarity=0.268 Sum_probs=143.6
Q ss_pred CcEEEEEEeecCCCCCCCCcchHHHHHHHHHHHHHhcCCCCCcEEEeeCCC-------------C---------------
Q 020767 6 SKRIAVLVGCNYPNTKNELHGCINDVLAMRDVIINRFGFDPNHIELLTDAP-------------G--------------- 57 (321)
Q Consensus 6 ~~~~Al~IGi~y~~~~~~L~~~~~Da~~~~~~L~~~~gf~~~~i~~L~d~~-------------~--------------- 57 (321)
.++-||+||++-|....+|.++.||+..|+.+|+. .||+.-+-..+.... +
T Consensus 2 ~~r~alvigns~~~~aa~l~np~~da~~~a~~L~~-iGfdvy~~~d~~~~~~~~~L~~f~~da~ga~~al~~~aGhg~Q~ 80 (380)
T COG4249 2 ERRVALVIGNSTYYVAAPLANPANDAGAMALWLTA-IGFDVYLDTDLPKSGLRRALRYFAEDAEGADVALIYYAGHGLQV 80 (380)
T ss_pred CcceEEEeecCcccccccCCCchhhHHHHHHHHHH-cCceeecccccchHHHHhHHHHHHHHHHHHhHHHhhhccccccc
Confidence 57899999999444567999999999999999986 788732111111100 0
Q ss_pred ------------------C-----------CCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCccCCCCCCCCCCCCC
Q 020767 58 ------------------S-----------SVMPTGANIKAALDRMVSKAEAGDVLLFHYSGHGTRIPSLRPIWPFRQQD 108 (321)
Q Consensus 58 ------------------~-----------~~~~T~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~~~~~g~~~~~~~ 108 (321)
. ...|++..|...|..+.+.....|..+|||||||..... +| .
T Consensus 81 ~~~~~~~pv~~~~~~~~~~~~~~v~~~~~~~~~p~~~~V~~~~lD~~~~~~~~d~~~~~fsG~g~~~~~--d~------~ 152 (380)
T COG4249 81 DGTNYLLPVDADDVSPTFAVTEAVLIDCRLIPLPARTKVRRVLLDAARDNPPADTILFFFSGHGATPGA--DG------R 152 (380)
T ss_pred cCccccccchhhhccccchhhhhhhhhhhcccCCchhHHHHHHHHHhhcCchhhhhhheeeccccccCC--CC------c
Confidence 0 126789999999999999888899999999999998532 12 3
Q ss_pred ceEEcCCCCC----------CcHHHHHHHHHhCCCCCeEEEEEeCCCCCccccccccccCCCCccchhcccCCCCCCCCC
Q 020767 109 EAIVPCDFNL----------ITDLDFRQLVNRLPKGASFTVFSDSCHSGGLIDKAKEQIGPSSNIDQLRTKQSPAFRPKT 178 (321)
Q Consensus 109 ~~l~p~D~~~----------i~~~~l~~ll~~l~~~~~v~~ilD~C~SG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 178 (321)
.||++.|.+. ++...+..++....++ +.++++|+||+|.+..... .+.
T Consensus 153 ~~lia~~t~p~~~a~~~~~~~s~~~~~~~~~~~~~~-~ql~~~d~~~~~~~~~~~~---------------------~~~ 210 (380)
T COG4249 153 AYLIAFDTRPGAVAYDGEGGISPYSVAQALHLSEPG-NQLVDLDACVRGDVFKATA---------------------GQQ 210 (380)
T ss_pred eeEEeecCChhhhcccCCCcccHHHHHHHHHhccCC-ceeehhhhhcchhhhcccc---------------------ccc
Confidence 4999998862 3444444444444344 5789999999999865421 122
Q ss_pred CChhhHHHhhhhhccCCCCcccchhhhhccCchhhhhhcCccchhhhhhccCCCCCCeEEEeecCCCCcccccCCCCCCC
Q 020767 179 IPFQSILEHLSSVTKINTSDIGTHLLEFFGVDASLRFRLAPNEVMDLFESWSLKPDDGILLSGCQANETSADMSPMESGG 258 (321)
Q Consensus 179 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lsAc~~~e~A~E~~~~~~~~ 258 (321)
.|.... . ...+.....+.+|.+++.++|...
T Consensus 211 ~p~l~~--------s------------------------------------~~~~~~~~~~~~~ap~~~~~e~~~----- 241 (380)
T COG4249 211 RPWLAQ--------S------------------------------------LAREFGFGILDSCAPDQQSAEAPE----- 241 (380)
T ss_pred chHhhh--------h------------------------------------hhcceeeeeccCCCCCcccccccc-----
Confidence 232110 0 112346678899999999999874
Q ss_pred chhhHHHHHHHHHHHhC---C----CCCCHHHHHHHHHHHHHh
Q 020767 259 KAYGAFSNAVQRVLKEN---S----GPLSNKEVVLMARKILKE 294 (321)
Q Consensus 259 ~~~G~FT~aLl~~L~~~---~----~~~t~~~L~~~v~~~v~~ 294 (321)
.+||+||++++.+|++. + +.++...++.+...++.+
T Consensus 242 ~g~gv~t~al~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~q 284 (380)
T COG4249 242 LGHGVFTDALLEGLRGGRAAAEDLDGLRSKDGLLAYDYAETAQ 284 (380)
T ss_pred ccCceeehhhhhcccccchhcccccchhhhhhhhhhhhhHHhh
Confidence 79999999999999883 2 234455555555555543
No 7
>PF14538 Raptor_N: Raptor N-terminal CASPase like domain
Probab=98.48 E-value=9.8e-07 Score=74.40 Aligned_cols=103 Identities=18% Similarity=0.355 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHhc-CCCC-CcEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCccCCCCCCCCCC
Q 020767 28 INDVLAMRDVIINRF-GFDP-NHIELLTDAPGSSVMPTGANIKAALDRMVSKAEAGDVLLFHYSGHGTRIPSLRPIWPFR 105 (321)
Q Consensus 28 ~~Da~~~~~~L~~~~-gf~~-~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~~~~~g~~~~ 105 (321)
.+-.+.+.+.|+..+ .+.+ .....+.| ||.+.+++.+..+.++++. +.|+|||-|||...+.. +|
T Consensus 43 ~~~~~~I~~~l~~qY~~~~~~~~~~~~~d-------pt~e~~~~~~~~~R~~a~~-~RvLFHYnGhGvP~Pt~-~G---- 109 (154)
T PF14538_consen 43 SKASEEIGKNLQSQYESWQPRARYKQSLD-------PTVEDLKRLCQSLRRNAKD-ERVLFHYNGHGVPRPTE-NG---- 109 (154)
T ss_pred hhHHHHHHHHHHHHHHHhCccCcEEEecC-------CCHHHHHHHHHHHHhhCCC-ceEEEEECCCCCCCCCC-CC----
Confidence 355666777777532 3332 23555555 7999999999999888765 99999999999997654 33
Q ss_pred CCCceEEcC-CCC---CCcHHHHHHHHHhCCCCCeEEEEEeCCCCCcccc
Q 020767 106 QQDEAIVPC-DFN---LITDLDFRQLVNRLPKGASFTVFSDSCHSGGLID 151 (321)
Q Consensus 106 ~~~~~l~p~-D~~---~i~~~~l~~ll~~l~~~~~v~~ilD~C~SG~~~~ 151 (321)
+.++.. +.. .++..+|.+|+. ...++|+||..+|.+++
T Consensus 110 ---eIw~f~~~~tqyip~si~dL~~~lg-----~Psi~V~DC~~AG~il~ 151 (154)
T PF14538_consen 110 ---EIWVFNKNYTQYIPLSIYDLQSWLG-----SPSIYVFDCSNAGSILN 151 (154)
T ss_pred ---eEEEEcCCCCcceEEEHHHHHHhcC-----CCEEEEEECCcHHHHHH
Confidence 223322 221 356666666653 35789999999998765
No 8
>KOG1348 consensus Asparaginyl peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=5.6e-06 Score=77.20 Aligned_cols=129 Identities=21% Similarity=0.291 Sum_probs=91.4
Q ss_pred CCCcEEEEEEee-c-CCCCCCCCcchHHHHHHHHHHHHHhcCCCCCcEEEeeCCC-C-----------------------
Q 020767 4 KGSKRIAVLVGC-N-YPNTKNELHGCINDVLAMRDVIINRFGFDPNHIELLTDAP-G----------------------- 57 (321)
Q Consensus 4 ~~~~~~Al~IGi-~-y~~~~~~L~~~~~Da~~~~~~L~~~~gf~~~~i~~L~d~~-~----------------------- 57 (321)
.++++||++|.= | ||+... ..|+---.+.|++ .|++++||.++.-.+ +
T Consensus 42 dggt~waVLVAGSngyyNYRH-----QADvcHAYqiLrk-gGikeEnIvv~MYDDIA~~~~NPrpG~iiN~P~G~DvY~G 115 (477)
T KOG1348|consen 42 DGGTRWAVLVAGSNGYYNYRH-----QADVCHAYQILRK-GGIKEENIVVMMYDDIANNEENPRPGVIINRPNGKDVYQG 115 (477)
T ss_pred cCceeEEEEEecCCcccchhh-----hhhHHHHHHHHHh-cCCCchhEEEEEehhhhcCCCCCCCceeecCCCchhhhcC
Confidence 457999998876 4 775422 4577778899985 799999988765321 1
Q ss_pred -----CCCCCcHHHHHHHHHH---HHH-------hCCCCCEEEEEeeCCCCccCCCCCCCCCCCCCceEEcCCCCCCcHH
Q 020767 58 -----SSVMPTGANIKAALDR---MVS-------KAEAGDVLLFHYSGHGTRIPSLRPIWPFRQQDEAIVPCDFNLITDL 122 (321)
Q Consensus 58 -----~~~~~T~~~I~~~l~~---l~~-------~~~~~D~v~~yfSGHG~~~~~~~~g~~~~~~~~~l~p~D~~~i~~~ 122 (321)
.....|.+|+...|.- -+. ...|+|.+||||+-||... .|...+...+...
T Consensus 116 vpkDYtg~~Vt~~Nf~aVllGd~savkGGsGKV~~SgpnDhiFiYytDHG~pG--------------vl~mP~~~~l~ak 181 (477)
T KOG1348|consen 116 VPKDYTGEDVTPQNFLAVLLGDASAVKGGSGKVLKSGPNDHIFIYYTDHGGPG--------------VLGMPTSPDLYAK 181 (477)
T ss_pred CCCcccCCcCCHHHHHHHHhcccccccCCCceeeccCCCceEEEEEecCCCCc--------------eEecCCCcchhHH
Confidence 1235688898888841 111 3568999999999999862 3444454556677
Q ss_pred HHHHHHHhCC---CCCeEEEEEeCCCCCccccc
Q 020767 123 DFRQLVNRLP---KGASFTVFSDSCHSGGLIDK 152 (321)
Q Consensus 123 ~l~~ll~~l~---~~~~v~~ilD~C~SG~~~~~ 152 (321)
+|++.|...- +-+++++-+.+|-||++..+
T Consensus 182 dlnevL~kmhk~k~Y~~mvfYlEACESGSmfeg 214 (477)
T KOG1348|consen 182 DLNEVLKKMHKSKTYKKMVFYLEACESGSMFEG 214 (477)
T ss_pred HHHHHHHHHHhccchheEEEEeeeccCcchhhh
Confidence 8888776652 33578999999999999874
No 9
>KOG1349 consensus Gpi-anchor transamidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=7.4e-06 Score=73.02 Aligned_cols=126 Identities=21% Similarity=0.264 Sum_probs=86.7
Q ss_pred CCcEEEEEEeec--CCCCCCCCcchHHHHHHHHHHHHHhcCCCCCcEEEeeCCC-C------------------------
Q 020767 5 GSKRIAVLVGCN--YPNTKNELHGCINDVLAMRDVIINRFGFDPNHIELLTDAP-G------------------------ 57 (321)
Q Consensus 5 ~~~~~Al~IGi~--y~~~~~~L~~~~~Da~~~~~~L~~~~gf~~~~i~~L~d~~-~------------------------ 57 (321)
..+.||++|.-+ ++.. --+..+-.+...++ +.|++..+|.++..+. +
T Consensus 26 htnNwAVLv~tSRfwfNY-----RH~aNvl~~YrsvK-rlGipDsqIilmladd~acn~RN~~pg~Vy~n~~~~~nlygd 99 (309)
T KOG1349|consen 26 HTNNWAVLVCTSRFWFNY-----RHVANVLSVYRSVK-RLGIPDSQIILMLADDMACNSRNPRPGTVYNNENHALNLYGD 99 (309)
T ss_pred ccCceEEEEecchhhhhH-----HHHHHHHHHHHHHH-HcCCCcccEEEEeccccccccCCCCCcceeccccccccccCC
Confidence 467899999987 3322 13667778888887 5899999987765442 1
Q ss_pred ------CCCCCcHHHHHHHHHH-HHH--------hCCCCCEEEEEeeCCCCccCCCCCCCCCCCCCceEEcCCCCCCcHH
Q 020767 58 ------SSVMPTGANIKAALDR-MVS--------KAEAGDVLLFHYSGHGTRIPSLRPIWPFRQQDEAIVPCDFNLITDL 122 (321)
Q Consensus 58 ------~~~~~T~~~I~~~l~~-l~~--------~~~~~D~v~~yfSGHG~~~~~~~~g~~~~~~~~~l~p~D~~~i~~~ 122 (321)
.....|-+++++.|.. .-. -...+..+++|..|||.. .+|=-.|...|+.+
T Consensus 100 ~vevdyrgyevtvEnflr~LTgR~~~~tprSKrlltDe~SNIlIYmtGHGgd--------------~FlKFqd~eelts~ 165 (309)
T KOG1349|consen 100 DVEVDYRGYEVTVENFLRVLTGRHPNNTPRSKRLLTDEGSNILIYLTGHGGD--------------GFLKFQDAEELTSD 165 (309)
T ss_pred cceeecccchhHHHHHHHHHcCCCCCCCchhhhhcccCCCcEEEEEccCCCc--------------cceecccHHHhhhH
Confidence 1234566666666631 000 133578999999999974 45666788788888
Q ss_pred HHHHHHHhCC--C-CCeEEEEEeCCCCCccc
Q 020767 123 DFRQLVNRLP--K-GASFTVFSDSCHSGGLI 150 (321)
Q Consensus 123 ~l~~ll~~l~--~-~~~v~~ilD~C~SG~~~ 150 (321)
+|.+.++++. + -..+++++|+|.+.++.
T Consensus 166 dLadai~qm~e~~Ryneil~miDTCQaasly 196 (309)
T KOG1349|consen 166 DLADAIQQMWEKKRYNEILFMIDTCQAASLY 196 (309)
T ss_pred HHHHHHHHHHHhhhhceEEEEeeccchHHHH
Confidence 9998888772 2 24589999999776653
No 10
>COG5206 GPI8 Glycosylphosphatidylinositol transamidase (GPIT), subunit GPI8 [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=6.5e-05 Score=67.44 Aligned_cols=126 Identities=20% Similarity=0.275 Sum_probs=86.6
Q ss_pred CcEEEEEEeec--CCCCCCCCcchHHHHHHHHHHHHHhcCCCCCcEEEeeCC-CC-------------------------
Q 020767 6 SKRIAVLVGCN--YPNTKNELHGCINDVLAMRDVIINRFGFDPNHIELLTDA-PG------------------------- 57 (321)
Q Consensus 6 ~~~~Al~IGi~--y~~~~~~L~~~~~Da~~~~~~L~~~~gf~~~~i~~L~d~-~~------------------------- 57 (321)
...||++|..+ ++.. + -...+-.|.+.++ +.|++..+|.++.-+ ++
T Consensus 27 tnNwAvLlstSRfwfNY----R-HmANVl~~Yr~vk-rlGipDsQIilm~~dd~acnsRnlfpgsvf~N~Dra~dlyge~ 100 (382)
T COG5206 27 TNNWAVLLSTSRFWFNY----R-HMANVLVFYRVVK-RLGIPDSQIILMSYDDQACNSRNLFPGSVFNNSDRAGDLYGED 100 (382)
T ss_pred CCceEEEEecccceeeh----h-hhhhHHHHHHHHH-HcCCCcceEEEEechhhhhhhcccCCcccccCcccccceeCcc
Confidence 45799999987 3322 1 1446678899887 489999888766533 21
Q ss_pred -----CCCCCcHHHHHHHHHHHHH---------hCCCCCEEEEEeeCCCCccCCCCCCCCCCCCCceEEcCCCCCCcHHH
Q 020767 58 -----SSVMPTGANIKAALDRMVS---------KAEAGDVLLFHYSGHGTRIPSLRPIWPFRQQDEAIVPCDFNLITDLD 123 (321)
Q Consensus 58 -----~~~~~T~~~I~~~l~~l~~---------~~~~~D~v~~yfSGHG~~~~~~~~g~~~~~~~~~l~p~D~~~i~~~~ 123 (321)
+...+|-+++.+.|..-.. ...+...+++|..|||.. .+|--.|...++.++
T Consensus 101 ~eidY~gyevTve~firLLt~r~~en~p~sKrlltdE~SNIfIYmtGHGgd--------------~FlKFqdaeemtseD 166 (382)
T COG5206 101 SEIDYSGYEVTVEVFIRLLTARSGENHPKSKRLLTDESSNIFIYMTGHGGD--------------AFLKFQDAEEMTSED 166 (382)
T ss_pred cccccccccchHHHHHHHHHhhccCCChhhhhhcccccCcEEEEEccCCCc--------------cceecccHHHhhhHH
Confidence 1356788888887754322 133567899999999974 345556777778888
Q ss_pred HHHHHHhCCC---CCeEEEEEeCCCCCcccc
Q 020767 124 FRQLVNRLPK---GASFTVFSDSCHSGGLID 151 (321)
Q Consensus 124 l~~ll~~l~~---~~~v~~ilD~C~SG~~~~ 151 (321)
|.+.+.++.. -..+++++|+|-..++.+
T Consensus 167 ladai~ql~~~kRyNeIlfmiDTCQAnaly~ 197 (382)
T COG5206 167 LADAISQLAAKKRYNEILFMIDTCQANALYD 197 (382)
T ss_pred HHHHHHHHHHhhhhceEEEEeeccccchhhh
Confidence 8888877742 235799999997766543
No 11
>COG4249 Uncharacterized protein containing caspase domain [General function prediction only]
Probab=97.80 E-value=3.8e-06 Score=80.66 Aligned_cols=161 Identities=19% Similarity=0.173 Sum_probs=100.4
Q ss_pred cHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCccCCCCCCCCCCCCCceEEcCCCCCCcHHHHH------H-HHHhCC--C
Q 020767 63 TGANIKAALDRMVSKAEAGDVLLFHYSGHGTRIPSLRPIWPFRQQDEAIVPCDFNLITDLDFR------Q-LVNRLP--K 133 (321)
Q Consensus 63 T~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~~~~~g~~~~~~~~~l~p~D~~~i~~~~l~------~-ll~~l~--~ 133 (321)
.+..++..|+.+...++.=|+++|||+|||.+... .+|++|.|....+..... + .+..++ .
T Consensus 48 ~~~~~~~~L~~f~~da~ga~~al~~~aGhg~Q~~~----------~~~~~pv~~~~~~~~~~~~~~v~~~~~~~~~p~~~ 117 (380)
T COG4249 48 PKSGLRRALRYFAEDAEGADVALIYYAGHGLQVDG----------TNYLLPVDADDVSPTFAVTEAVLIDCRLIPLPART 117 (380)
T ss_pred chHHHHhHHHHHHHHHHHHhHHHhhhccccccccC----------ccccccchhhhccccchhhhhhhhhhhcccCCchh
Confidence 46678888999988888889999999999999764 489999987532211110 1 111122 1
Q ss_pred CCeEEEEEeCCCCCccccccccccCCCCccchhcccCCCCCCCCCCChhhHHHhhhhhccCCCCcccchhhhhccCchhh
Q 020767 134 GASFTVFSDSCHSGGLIDKAKEQIGPSSNIDQLRTKQSPAFRPKTIPFQSILEHLSSVTKINTSDIGTHLLEFFGVDASL 213 (321)
Q Consensus 134 ~~~v~~ilD~C~SG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~ 213 (321)
.++ .+|+|.|+.-...+... .+|+.-
T Consensus 118 ~V~-~~~lD~~~~~~~~d~~~--------------------------------------------------~~fsG~--- 143 (380)
T COG4249 118 KVR-RVLLDAARDNPPADTIL--------------------------------------------------FFFSGH--- 143 (380)
T ss_pred HHH-HHHHHHhhcCchhhhhh--------------------------------------------------heeecc---
Confidence 222 46777776554421110 011000
Q ss_pred hhhcCccchhhhhhccCCCCCCeEEEeecCCCCcccccCCCCCCCchhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 020767 214 RFRLAPNEVMDLFESWSLKPDDGILLSGCQANETSADMSPMESGGKAYGAFSNAVQRVLKENSGPLSNKEVVLMARKILK 293 (321)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~lsAc~~~e~A~E~~~~~~~~~~~G~FT~aLl~~L~~~~~~~t~~~L~~~v~~~v~ 293 (321)
++. ...++..+.+.+..++++.+++. ..++++|+-++...|.+.+. ...++..+++..+.
T Consensus 144 ----------g~~--~~~d~~~~lia~~t~p~~~a~~~------~~~~s~~~~~~~~~~~~~~~--ql~~~d~~~~~~~~ 203 (380)
T COG4249 144 ----------GAT--PGADGRAYLIAFDTRPGAVAYDG------EGGISPYSVAQALHLSEPGN--QLVDLDACVRGDVF 203 (380)
T ss_pred ----------ccc--cCCCCceeEEeecCChhhhcccC------CCcccHHHHHHHHHhccCCc--eeehhhhhcchhhh
Confidence 000 01244457777777888888875 35789999999999988653 45666777776554
Q ss_pred h-CCCCCcccccccC
Q 020767 294 E-QRFEQHPCLYCSD 307 (321)
Q Consensus 294 ~-~~~~Q~P~l~~~~ 307 (321)
. ...+|.||+..+.
T Consensus 204 ~~~~~~~~p~l~~s~ 218 (380)
T COG4249 204 KATAGQQRPWLAQSL 218 (380)
T ss_pred cccccccchHhhhhh
Confidence 3 3447899988654
No 12
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.07 E-value=0.002 Score=67.61 Aligned_cols=103 Identities=17% Similarity=0.302 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHhc-CCCC-CcEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCccCCCCCCCCCC
Q 020767 28 INDVLAMRDVIINRF-GFDP-NHIELLTDAPGSSVMPTGANIKAALDRMVSKAEAGDVLLFHYSGHGTRIPSLRPIWPFR 105 (321)
Q Consensus 28 ~~Da~~~~~~L~~~~-gf~~-~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~~~~~g~~~~ 105 (321)
-.-+++|.+-|+..| -+.+ ..-++-.| ||.+.+++.=..+.+. .++|.|+|||-|||...+.. +|+
T Consensus 139 ~KA~e~IG~nlq~qYE~wqprtRYK~~lD-------P~vddVrKlc~slRr~-ak~eRvLFHYNGHGVPkPT~-nGE--- 206 (1387)
T KOG1517|consen 139 PKALEAIGKNLQRQYERWQPRTRYKVCLD-------PTVDDVRKLCTSLRRN-AKEERVLFHYNGHGVPKPTA-NGE--- 206 (1387)
T ss_pred hHHHHHHHHHHHHHHHhhChhhhhhhccC-------CcHHHHHHHHHHHhhh-cCCceEEEEecCCCCCCCCC-CCc---
Confidence 356667777676533 2222 22333444 7899988876666544 47899999999999998876 552
Q ss_pred CCCceEEcC-CC-C--CCcHHHHHHHHHhCCCCCeEEEEEeCCCCCcccc
Q 020767 106 QQDEAIVPC-DF-N--LITDLDFRQLVNRLPKGASFTVFSDSCHSGGLID 151 (321)
Q Consensus 106 ~~~~~l~p~-D~-~--~i~~~~l~~ll~~l~~~~~v~~ilD~C~SG~~~~ 151 (321)
.+|-- .+ + .++--+|..||.. --+.|.||-..+.++-
T Consensus 207 ----IWVFNK~fTQYIPlsi~dLqsWl~a-----P~IyVydcssA~~Il~ 247 (1387)
T KOG1517|consen 207 ----IWVFNKSFTQYIPLSIFDLQSWLGA-----PTIYVYDCSSAENILV 247 (1387)
T ss_pred ----EEEEecCcceeecccHHHHHhhhcC-----CeEEEEeccchHHHHH
Confidence 33321 11 1 3467788899853 3479999877775543
No 13
>PF12770 CHAT: CHAT domain
Probab=97.04 E-value=0.0069 Score=55.66 Aligned_cols=109 Identities=23% Similarity=0.344 Sum_probs=72.0
Q ss_pred EEEeecCCCC-------CCCCcchHHHHHHHHHHHHHhcCCCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCCCCCE
Q 020767 11 VLVGCNYPNT-------KNELHGCINDVLAMRDVIINRFGFDPNHIELLTDAPGSSVMPTGANIKAALDRMVSKAEAGDV 83 (321)
Q Consensus 11 l~IGi~y~~~-------~~~L~~~~~Da~~~~~~L~~~~gf~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~D~ 83 (321)
++||...... ..+|++....+..+.+.+.. .+. .++.... +|++++++.+ ...+.
T Consensus 82 l~i~~p~~~~~~~~~~~~~~l~~~~~e~~~l~~~~~~-~~~-----~~~~~~~-----at~~~l~~~l-------~~~~~ 143 (287)
T PF12770_consen 82 LVIGNPDFGGSLIRGAALSPLPGAQREADALAELLGA-GGL-----RVLVGPE-----ATKDALLEAL-------ERRGP 143 (287)
T ss_pred EEEecCCCcccccccccccCchHHHHHHHHHHHHhcc-cce-----eEeeccC-----CCHHHHHhhh-------ccCCC
Confidence 7777753321 37889999889888888754 222 3444443 6999998888 33455
Q ss_pred EEEEeeCCCCccCCCCCCCCCCCCCceEEcC-----CCCCCcHHHHHHHHHhCCCCCeEEEEEeCCCCCc
Q 020767 84 LLFHYSGHGTRIPSLRPIWPFRQQDEAIVPC-----DFNLITDLDFRQLVNRLPKGASFTVFSDSCHSGG 148 (321)
Q Consensus 84 v~~yfSGHG~~~~~~~~g~~~~~~~~~l~p~-----D~~~i~~~~l~~ll~~l~~~~~v~~ilD~C~SG~ 148 (321)
=+|||+|||...... . ....|+.. +...++..+|..+ .++ +.+ ++||-+|+||.
T Consensus 144 ~ilH~a~Hg~~~~~~--~-----~~~~l~l~~~~~~~~~~l~~~~l~~l--~l~-~~~-lVvLsaC~s~~ 202 (287)
T PF12770_consen 144 DILHFAGHGTFDPDP--P-----DQSGLVLSDESGQEDGLLSAEELAQL--DLR-GPR-LVVLSACESAS 202 (287)
T ss_pred CEEEEEcccccCCCC--C-----CCCEEEEeccCCCCCcccCHHHHHhh--cCC-CCC-EEEecCcCCcC
Confidence 699999999987322 1 14566666 3345677777662 232 233 79999999994
No 14
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=84.43 E-value=3.3 Score=38.36 Aligned_cols=63 Identities=19% Similarity=0.295 Sum_probs=42.9
Q ss_pred cHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCccCCCCCCCCCCCCCceEEcCCCCCCcHHHHHHHHHhCCCCCeEEEEEe
Q 020767 63 TGANIKAALDRMVSKAEAGDVLLFHYSGHGTRIPSLRPIWPFRQQDEAIVPCDFNLITDLDFRQLVNRLPKGASFTVFSD 142 (321)
Q Consensus 63 T~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~~~~~g~~~~~~~~~l~p~D~~~i~~~~l~~ll~~l~~~~~v~~ilD 142 (321)
..++|.++|+.++.. +....++.+++|-|.-... .-.+|.++++.+....++-+.||
T Consensus 119 ~l~~i~~~Ln~~~~~-~~v~i~~e~~agegs~~g~----------------------~F~~L~eii~~~~~~~~igvCiD 175 (280)
T COG0648 119 GLNRIAEALNELLEE-EGVIILLENTAGEGSGKGT----------------------QFGELAEIIDLIEEKERIGVCID 175 (280)
T ss_pred HHHHHHHHHHHHhhc-cCCeEEEEEeccccCcccc----------------------chhhHHHHHHhhcccCceEEEEE
Confidence 446677777777665 4456777888887766432 13467888877754446899999
Q ss_pred CCCCCc
Q 020767 143 SCHSGG 148 (321)
Q Consensus 143 ~C~SG~ 148 (321)
+||--.
T Consensus 176 tcH~~A 181 (280)
T COG0648 176 TCHAFA 181 (280)
T ss_pred chhhhh
Confidence 999544
No 15
>COG4995 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.91 E-value=7.1 Score=38.26 Aligned_cols=100 Identities=16% Similarity=0.152 Sum_probs=62.2
Q ss_pred CCCCcchHHHHHHHHHHHHHhcCCCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCccCCCCC
Q 020767 21 KNELHGCINDVLAMRDVIINRFGFDPNHIELLTDAPGSSVMPTGANIKAALDRMVSKAEAGDVLLFHYSGHGTRIPSLRP 100 (321)
Q Consensus 21 ~~~L~~~~~Da~~~~~~L~~~~gf~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~~~~~ 100 (321)
..+|+++...++.+.+.+... .++.+.. -|.++....++.. +-=+|||++||......
T Consensus 231 ~~~Lp~~~~Ev~~Ia~~~~~~--------~~ll~q~-----Ft~~~~~~~~~~~-------~~~vvHlATHg~f~s~~-- 288 (420)
T COG4995 231 FDALPFAALEVETIAAIFPPQ--------KLLLNQA-----FTAANLAQEIDTK-------PYSVVHLATHGQFSSGN-- 288 (420)
T ss_pred ccccchHHHHHHHHHHhhhhH--------Hhhhccc-----chhhHHhhhhhcC-------CCceEEEeccccccCCC--
Confidence 479999999999999887431 2233332 3444544444422 45589999999887532
Q ss_pred CCCCCCCCceEEcCCCCCCcHHHHHHHHHh--C-CCCCeEEEEEeCCCCCcc
Q 020767 101 IWPFRQQDEAIVPCDFNLITDLDFRQLVNR--L-PKGASFTVFSDSCHSGGL 149 (321)
Q Consensus 101 g~~~~~~~~~l~p~D~~~i~~~~l~~ll~~--l-~~~~~v~~ilD~C~SG~~ 149 (321)
..+.+|+.+|.+. ..+++..++.. . ...+. ++||-+|--|..
T Consensus 289 -----p~~S~l~~~~~~~-~~~~~~~~~~~~~~~~~~vd-LvVLSACqTa~g 333 (420)
T COG4995 289 -----PEDSFLLLWDGPI-NVTELDILLRNRNNNLLPVE-LVVLSACQTALG 333 (420)
T ss_pred -----cccceeeecCCCC-cccHHHHHHHhcccCCCCee-eEEEecchhccC
Confidence 1257888888764 23344444433 1 12344 799999988774
No 16
>COG2379 GckA Putative glycerate kinase [Carbohydrate transport and metabolism]
Probab=76.33 E-value=35 Score=33.09 Aligned_cols=81 Identities=20% Similarity=0.327 Sum_probs=48.5
Q ss_pred CCcEEEEEEeecCCCCCCCCcchHHHHHHHHHHHHH--------hcCC--CCCcEEEeeCCCCCCCCCcHHHHHHHH--H
Q 020767 5 GSKRIAVLVGCNYPNTKNELHGCINDVLAMRDVIIN--------RFGF--DPNHIELLTDAPGSSVMPTGANIKAAL--D 72 (321)
Q Consensus 5 ~~~~~Al~IGi~y~~~~~~L~~~~~Da~~~~~~L~~--------~~gf--~~~~i~~L~d~~~~~~~~T~~~I~~~l--~ 72 (321)
.++.+++|||.. +++..-++++.+.+.. ++|+ +..+|.++.... ..|....+...- -
T Consensus 35 ~p~gr~~Vig~G--------KAs~~MA~a~~~~~~~~~~GvVVt~~g~~~~~~~ieViea~H---PvPDe~s~~asrrlL 103 (422)
T COG2379 35 PPKGRTIVIGAG--------KASAEMARAFEEHWKGPLAGVVVTPYGYGGPCPRIEVIEAGH---PVPDEASLKASRRLL 103 (422)
T ss_pred CCCCceEEEecc--------hhHHHHHHHHHHHhccccCceEeccCccCCCCCceeEEeCCC---CCCCchhHHHHHHHH
Confidence 456688888884 1344455555555521 2233 224677766543 234555554433 2
Q ss_pred HHHHhCCCCCEEEEEeeCCCCccC
Q 020767 73 RMVSKAEAGDVLLFHYSGHGTRIP 96 (321)
Q Consensus 73 ~l~~~~~~~D~v~~yfSGHG~~~~ 96 (321)
+++..++++|.|++.+||-|..--
T Consensus 104 ~~v~~l~e~D~Vi~LISGGGSaL~ 127 (422)
T COG2379 104 ELVSGLTEDDLVIVLISGGGSALL 127 (422)
T ss_pred HHhcCCCCCcEEEEEEeCCchhhc
Confidence 445678899999999999887643
No 17
>PF03415 Peptidase_C11: Clostripain family This family belongs to family C11 of the peptidase classification.; InterPro: IPR005077 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C11 (clostripain family, clan CD). ; PDB: 3UWS_A.
Probab=68.71 E-value=8.8 Score=37.45 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=41.0
Q ss_pred CCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCccCCCCCCCCCCCCCceEEcCCC----CCCcHHHHHHHHHhCCCCCe
Q 020767 61 MPTGANIKAALDRMVSKAEAGDVLLFHYSGHGTRIPSLRPIWPFRQQDEAIVPCDF----NLITDLDFRQLVNRLPKGAS 136 (321)
Q Consensus 61 ~~T~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~~~~~g~~~~~~~~~l~p~D~----~~i~~~~l~~ll~~l~~~~~ 136 (321)
..+.+.+.+-|.|..+.. |-+.-.+-+.+||.-..... . .. ...+ ..|. ..+.-.+|.+.|+ .+.+
T Consensus 77 m~dp~tL~~fi~~~~~~y-PA~~y~LIlw~HG~Gw~~~~-~-~~---~rg~-~~D~~~~~~~l~i~el~~aL~---~~~~ 146 (397)
T PF03415_consen 77 MGDPDTLSDFINWAKENY-PADRYGLILWDHGGGWLPAS-D-SS---TRGI-GFDETSGGDYLSIPELAEALE---GGPK 146 (397)
T ss_dssp TTSHHHHHHHHHHHHHHS--ECEEEEEEES-B-TT--TT-G-GG------E-EEETTE---EE-HHHHHHHS-----TT-
T ss_pred CCCHHHHHHHHHHHHHhC-CcccEEEEEEECCCCCCcCC-C-CC---cceE-ecCCCChhhcccHHHHHHHHc---CCCC
Confidence 345667777778777654 66778888899997663220 0 00 1112 2222 2455677777776 2333
Q ss_pred E-EEEEeCCCCCcc
Q 020767 137 F-TVFSDSCHSGGL 149 (321)
Q Consensus 137 v-~~ilD~C~SG~~ 149 (321)
+ ++.||+|.-|++
T Consensus 147 ~d~I~FDaClM~~v 160 (397)
T PF03415_consen 147 FDFIGFDACLMGSV 160 (397)
T ss_dssp EEEEEEESTT--BH
T ss_pred CcEEEECcccchhH
Confidence 4 899999999986
No 18
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=68.68 E-value=20 Score=33.81 Aligned_cols=74 Identities=19% Similarity=0.185 Sum_probs=40.8
Q ss_pred CCcEEEEEEeecCCCCCCCCcchHHHHHHHHHHHHHhcCCCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCCCCCEE
Q 020767 5 GSKRIAVLVGCNYPNTKNELHGCINDVLAMRDVIINRFGFDPNHIELLTDAPGSSVMPTGANIKAALDRMVSKAEAGDVL 84 (321)
Q Consensus 5 ~~~~~Al~IGi~y~~~~~~L~~~~~Da~~~~~~L~~~~gf~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~D~v 84 (321)
...+.||+||=+-. .-.....++..+.+.|.....-....+.+.+..- |-.++.++|..+.. ..+.+
T Consensus 145 ~~p~~avLIGG~s~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRR------Tp~~~~~~L~~~~~---~~~~~ 211 (311)
T PF06258_consen 145 PRPRVAVLIGGDSK----HYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRR------TPPEAEAALRELLK---DNPGV 211 (311)
T ss_pred CCCeEEEEECcCCC----CcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCC------CcHHHHHHHHHhhc---CCCce
Confidence 36788999996411 1223455666666655542111112344444443 77888888887654 33455
Q ss_pred EEEeeCCC
Q 020767 85 LFHYSGHG 92 (321)
Q Consensus 85 ~~yfSGHG 92 (321)
.|| ++.|
T Consensus 212 ~~~-~~~~ 218 (311)
T PF06258_consen 212 YIW-DGTG 218 (311)
T ss_pred EEe-cCCC
Confidence 444 6655
No 19
>KOG1321 consensus Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]
Probab=68.40 E-value=21 Score=33.63 Aligned_cols=64 Identities=14% Similarity=0.227 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHh-CC-----CCCEEEEEeeCCCCccCCC
Q 020767 29 NDVLAMRDVIINRFGFDPNHIELLTDAPGSSVMPTGANIKAALDRMVSK-AE-----AGDVLLFHYSGHGTRIPSL 98 (321)
Q Consensus 29 ~Da~~~~~~L~~~~gf~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~-~~-----~~D~v~~yfSGHG~~~~~~ 98 (321)
...+.+.+.+++ -|+..+=-.-+.|. +||+..+.++|.+.+.+ ++ ..|.|+++||.||....-.
T Consensus 173 SSln~l~r~~r~-~~~~~~~~wsiIdr-----W~t~~glIkafA~~I~keL~~F~~~~r~~VVIlFSAHslPms~V 242 (395)
T KOG1321|consen 173 SSLNELWRQFRE-DGYERDIKWSIIDR-----WPTREGLIKAFAENIEKELQTFPEPVRDDVVILFSAHSLPMSVV 242 (395)
T ss_pred ccHHHHHHHHHh-cCcccCCceEeecc-----ccccchHHHHHHHHHHHHHHhcCCcccccEEEEEecCCCcHHHH
Confidence 345567777765 46654311223343 68888888888655542 11 2378889999999886543
No 20
>COG1791 Uncharacterized conserved protein, contains double-stranded beta-helix domain [Function unknown]
Probab=57.57 E-value=50 Score=28.32 Aligned_cols=61 Identities=13% Similarity=0.211 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCccC
Q 020767 29 NDVLAMRDVIINRFGFDPNHIELLTDAPGSSVMPTGANIKAALDRMVSKAEAGDVLLFHYSGHGTRIP 96 (321)
Q Consensus 29 ~Da~~~~~~L~~~~gf~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~ 96 (321)
++-....+-|.+..||...++..+.... |-+++++..+-+ .-.-.+|-|-++.+|||...-
T Consensus 50 ~a~~~eid~l~~e~Gyk~~Dvvsv~~~~-----pk~del~akF~~--EH~H~d~EvRy~vaG~GiF~v 110 (181)
T COG1791 50 DAYETEIDRLIRERGYKNRDVVSVSPSN-----PKLDELRAKFLQ--EHLHTDDEVRYFVAGEGIFDV 110 (181)
T ss_pred hhHHHHHHHHHHhhCCceeeEEEeCCCC-----ccHHHHHHHHHH--HhccCCceEEEEEecceEEEE
Confidence 3444455556667899877777777654 678887777643 234467899999999997643
No 21
>PF13660 DUF4147: Domain of unknown function (DUF4147); PDB: 1X3L_A 2B8N_A.
Probab=52.69 E-value=37 Score=30.75 Aligned_cols=44 Identities=23% Similarity=0.432 Sum_probs=27.2
Q ss_pred cEEEeeCCCCCCCCCcHHHHHH--HHHHHHHhCCCCCEEEEEeeCCCCc
Q 020767 48 HIELLTDAPGSSVMPTGANIKA--ALDRMVSKAEAGDVLLFHYSGHGTR 94 (321)
Q Consensus 48 ~i~~L~d~~~~~~~~T~~~I~~--~l~~l~~~~~~~D~v~~yfSGHG~~ 94 (321)
+|.++... +..|+...+.. .+.++++.+.++|.|+|..||=|.-
T Consensus 84 ~i~v~~~~---HP~Pd~~s~~aa~~il~~~~~~~~~dlvl~LiSGGgSA 129 (238)
T PF13660_consen 84 RIEVLEGG---HPLPDENSVRAARRILELARELTEDDLVLVLISGGGSA 129 (238)
T ss_dssp TSEEEEE----SSS--HHHHHHHHHHHHHHCC--TTSEEEEEE-TTHHH
T ss_pred CEEEEECC---CCCCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCChHH
Confidence 44454433 34678877765 4567888899999999999997765
No 22
>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]
Probab=51.44 E-value=26 Score=31.34 Aligned_cols=29 Identities=17% Similarity=0.374 Sum_probs=23.1
Q ss_pred cHHHHHHHHHhCCCCCeEEEEEeCCCCCc
Q 020767 120 TDLDFRQLVNRLPKGASFTVFSDSCHSGG 148 (321)
Q Consensus 120 ~~~~l~~ll~~l~~~~~v~~ilD~C~SG~ 148 (321)
+..+|+.++..+....++=+.||+||--+
T Consensus 157 tfeelk~ii~~Ikdk~RigVClDTCH~Fa 185 (281)
T KOG3997|consen 157 TFEELKFIIGKIKDKSRIGVCLDTCHTFA 185 (281)
T ss_pred cHHHHHHHHHhhcchhhheeeHhhhhhhc
Confidence 46789999999975557889999999644
No 23
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=48.92 E-value=15 Score=23.68 Aligned_cols=18 Identities=6% Similarity=0.229 Sum_probs=11.8
Q ss_pred HHHHHHHHhCCCCCeEEEE
Q 020767 122 LDFRQLVNRLPKGASFTVF 140 (321)
Q Consensus 122 ~~l~~ll~~l~~~~~v~~i 140 (321)
.+|..|++.+.+ .++++|
T Consensus 21 ~~L~~~i~~~~p-~~vilV 38 (43)
T PF07521_consen 21 EELLEFIEQLNP-RKVILV 38 (43)
T ss_dssp HHHHHHHHHHCS-SEEEEE
T ss_pred HHHHHHHHhcCC-CEEEEe
Confidence 468888888854 455443
No 24
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=48.12 E-value=58 Score=26.49 Aligned_cols=46 Identities=24% Similarity=0.302 Sum_probs=35.6
Q ss_pred cEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCc
Q 020767 48 HIELLTDAPGSSVMPTGANIKAALDRMVSKAEAGDVLLFHYSGHGTR 94 (321)
Q Consensus 48 ~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~ 94 (321)
+|.+|.|...+-.... ..+++++..+++.+.++|.+-|+..|+...
T Consensus 2 ~vvilvD~S~Sm~g~~-~~~k~al~~~l~~L~~~d~fnii~f~~~~~ 47 (155)
T PF13768_consen 2 DVVILVDTSGSMSGEK-ELVKDALRAILRSLPPGDRFNIIAFGSSVR 47 (155)
T ss_pred eEEEEEeCCCCCCCcH-HHHHHHHHHHHHhCCCCCEEEEEEeCCEee
Confidence 5788888754322223 788899999999999999999999888644
No 25
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=47.74 E-value=1.1e+02 Score=28.76 Aligned_cols=85 Identities=16% Similarity=0.315 Sum_probs=53.8
Q ss_pred HHHHHHHHhcCC----------CCCcEEEeeCCCC-------CCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCcc
Q 020767 33 AMRDVIINRFGF----------DPNHIELLTDAPG-------SSVMPTGANIKAALDRMVSKAEAGDVLLFHYSGHGTRI 95 (321)
Q Consensus 33 ~~~~~L~~~~gf----------~~~~i~~L~d~~~-------~~~~~T~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~ 95 (321)
.|.++|.+ .|+ ...||+++.+.+. +....+.+++..-++.+...++++|.|++ || ..
T Consensus 66 ~~~~~l~~-~gi~~~fv~v~g~TRinvki~~~~~~~~Tein~~Gp~is~~~~~~~l~~~~~~l~~~d~Vvl--sG---Sl 139 (310)
T COG1105 66 FFVALLKD-EGIPDAFVEVKGDTRINVKILDEEDGEETEINFPGPEISEAELEQFLEQLKALLESDDIVVL--SG---SL 139 (310)
T ss_pred HHHHHHHh-cCCCceEEEccCCCeeeEEEEecCCCcEEEecCCCCCCCHHHHHHHHHHHHHhcccCCEEEE--eC---CC
Confidence 46666665 343 2457777777431 33456778888878888777999999766 44 22
Q ss_pred CCCCCCCCCCCCCceEEcCCCCCCcHHHHHHHHHhCCCCCeEEEEEeCC
Q 020767 96 PSLRPIWPFRQQDEAIVPCDFNLITDLDFRQLVNRLPKGASFTVFSDSC 144 (321)
Q Consensus 96 ~~~~~g~~~~~~~~~l~p~D~~~i~~~~l~~ll~~l~~~~~v~~ilD~C 144 (321)
+ . .++.+.+.+|++.++. ..+-+|+||-
T Consensus 140 P-----------------~---g~~~d~y~~li~~~~~-~g~~vilD~S 167 (310)
T COG1105 140 P-----------------P---GVPPDAYAELIRILRQ-QGAKVILDTS 167 (310)
T ss_pred C-----------------C---CCCHHHHHHHHHHHHh-cCCeEEEECC
Confidence 1 1 2345667778777753 2356899974
No 26
>PF01364 Peptidase_C25: Peptidase family C25 This family belongs to family C25 of the peptidase classification.; InterPro: IPR001769 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C25 (gingipain, clan CD). The protein fold of the peptidase domain for members of this entry resembles that of caspase 1, the type example for clan CD. This is a protein family found only in the bacteria. Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=47.47 E-value=29 Score=33.35 Aligned_cols=48 Identities=8% Similarity=0.038 Sum_probs=24.2
Q ss_pred CCCeEEEeecCCCCcccccCCCCCCCchhhHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 020767 233 PDDGILLSGCQANETSADMSPMESGGKAYGAFSNAVQRVLKENSGPLSNKEVVLMARKIL 292 (321)
Q Consensus 233 ~~~~~~lsAc~~~e~A~E~~~~~~~~~~~G~FT~aLl~~L~~~~~~~t~~~L~~~v~~~v 292 (321)
++...+|++++. ++. ..+-.|...|.+.|-..... +..+.+...+..+
T Consensus 303 gGAia~ig~s~~---~~~--------~~~~~~~~~~~~~l~~~~~~-~lG~a~~~a~~~~ 350 (378)
T PF01364_consen 303 GGAIAFIGSSRV---SYA--------SPNDRLNRGFYEALFNSNMD-TLGEALRQAKNYY 350 (378)
T ss_dssp -S-SEEEEESS-----SS--------HHHHHHHHHHTT-STT-----BHHHHHHHHHHHH
T ss_pred CcEEEEEeccee---Eec--------chHHHHHHHHHHHHhccCCC-CHHHHHHHHHHHH
Confidence 345567766543 221 12456777777777554432 6788777766544
No 27
>PRK06107 aspartate aminotransferase; Provisional
Probab=46.14 E-value=74 Score=30.61 Aligned_cols=30 Identities=17% Similarity=0.203 Sum_probs=20.4
Q ss_pred CcHHHHHHHHHhCCCCCeEEEEEeCCCCCc
Q 020767 119 ITDLDFRQLVNRLPKGASFTVFSDSCHSGG 148 (321)
Q Consensus 119 i~~~~l~~ll~~l~~~~~v~~ilD~C~SG~ 148 (321)
++.+++..+++-..+...+++|.|.+|+.-
T Consensus 183 ~s~~~~~~l~~~a~~~~~~~iI~De~y~~l 212 (402)
T PRK06107 183 YSRAELRALADVLLRHPHVLVLTDDIYDHI 212 (402)
T ss_pred cCHHHHHHHHHHHHHcCCeEEEEehhcccc
Confidence 566777777765532225889999998743
No 28
>PRK00809 hypothetical protein; Provisional
Probab=44.61 E-value=26 Score=29.15 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=16.9
Q ss_pred HHHHhCCCCCEEEEEeeC-CCCc
Q 020767 73 RMVSKAEAGDVLLFHYSG-HGTR 94 (321)
Q Consensus 73 ~l~~~~~~~D~v~~yfSG-HG~~ 94 (321)
..++++++||.+|||-|+ +|..
T Consensus 30 n~lr~Mk~GD~v~fYhs~~~~~~ 52 (144)
T PRK00809 30 NTIEKVKPGDKLIIYVSQEYGAE 52 (144)
T ss_pred hHHhhCCCCCEEEEEECCccCCC
Confidence 345579999999999997 5544
No 29
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=43.99 E-value=95 Score=23.40 Aligned_cols=54 Identities=13% Similarity=0.233 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhcCCCCC-cEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeC
Q 020767 31 VLAMRDVIINRFGFDPN-HIELLTDAPGSSVMPTGANIKAALDRMVSKAEAGDVLLFHYSG 90 (321)
Q Consensus 31 a~~~~~~L~~~~gf~~~-~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~D~v~~yfSG 90 (321)
...+...|+++.+.+++ .|.+..++. ..|+.+. .+..|.+.-+.++.+++.||+
T Consensus 28 v~~~~~~lrk~L~l~~~~slflyvnn~---f~p~~d~---~~g~LY~~~~~dGfLyi~Ys~ 82 (87)
T cd01612 28 FQAVIDFLRKRLKLKASDSLFLYINNS---FAPSPDE---NVGNLYRCFGTNGELIVSYCK 82 (87)
T ss_pred HHHHHHHHHHHhCCCccCeEEEEECCc---cCCCchh---HHHHHHHhcCCCCEEEEEEeC
Confidence 44577778888887654 488888763 1245443 344444444578899999986
No 30
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=42.66 E-value=53 Score=30.99 Aligned_cols=109 Identities=17% Similarity=0.191 Sum_probs=58.4
Q ss_pred chHHHHHHHHHHHHHhcCCCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCCCC-CEEEEEeeCCCCccC--------
Q 020767 26 GCINDVLAMRDVIINRFGFDPNHIELLTDAPGSSVMPTGANIKAALDRMVSKAEAG-DVLLFHYSGHGTRIP-------- 96 (321)
Q Consensus 26 ~~~~Da~~~~~~L~~~~gf~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~-D~v~~yfSGHG~~~~-------- 96 (321)
++..+...+++.+.+.+|+++++|.+ ++. +.+.|...+..+ +++| |.|++.--+|+....
T Consensus 54 Yp~~~~~~l~~~~a~~~g~~~~~I~~-~~G-------s~e~i~~~~~~~---~~~g~~~vli~~P~y~~y~~~~~~~G~~ 122 (351)
T PRK01688 54 YPECQPKAVIENYAAYAGVKPEQVLV-SRG-------ADEGIELLIRAF---CEPGKDAILYCPPTYGMYSVSAETIGVE 122 (351)
T ss_pred CCCCChHHHHHHHHHHhCCCHHHEEE-cCC-------HHHHHHHHHHHh---cCCCCCEEEEcCCCHHHHHHHHHHcCCE
Confidence 44445578888888888999998764 432 234444444433 4566 877776444432211
Q ss_pred --CC--CCCCCC---------CCCCceEEcC--C--CCCCcHHHHHHHHHhCCCCCeEEEEEeCCCCC
Q 020767 97 --SL--RPIWPF---------RQQDEAIVPC--D--FNLITDLDFRQLVNRLPKGASFTVFSDSCHSG 147 (321)
Q Consensus 97 --~~--~~g~~~---------~~~~~~l~p~--D--~~~i~~~~l~~ll~~l~~~~~v~~ilD~C~SG 147 (321)
.. ..++.. ....-.+++. + +..++..+|.++++..++ +.++|+|-+|..
T Consensus 123 ~~~v~~~~~~~~d~~~l~~~~~~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~--~~~vivDEay~~ 188 (351)
T PRK01688 123 IRTVPTLDNWQLDLPAIADNLDGVKVVYVCSPNNPTGNLINPQDLRTLLELTRG--KAIVVADEAYIE 188 (351)
T ss_pred EEEeecCCCCCCCHHHHHHhccCCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCC--CcEEEEECchhh
Confidence 00 000000 0001112211 1 113677889999887653 467999999843
No 31
>PLN02994 1-aminocyclopropane-1-carboxylate synthase
Probab=41.82 E-value=66 Score=26.91 Aligned_cols=48 Identities=25% Similarity=0.306 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhcC----CCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEE
Q 020767 28 INDVLAMRDVIINRFG----FDPNHIELLTDAPGSSVMPTGANIKAALDRMVSKAEAGDVLLF 86 (321)
Q Consensus 28 ~~Da~~~~~~L~~~~g----f~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~D~v~~ 86 (321)
..=-+++++++.+++| +.+++|.+... ....+...+.-| +++||.|++
T Consensus 95 ~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~G--------a~~al~~l~~~l---~dpGD~VlV 146 (153)
T PLN02994 95 ANFRKAIANFMAEARGGRVKFDADMIVLSAG--------ATAANEIIMFCI---ADPGDAFLV 146 (153)
T ss_pred HHHHHHHHHHHHHHhCCCCccchhheEEcCC--------HHHHHHHHHHHH---cCCCCEEEE
Confidence 3334567788877666 45667655433 223333333322 468998887
No 32
>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily. The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.
Probab=41.49 E-value=22 Score=29.08 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=12.3
Q ss_pred HHHhCCCCCEEEEEeeC
Q 020767 74 MVSKAEAGDVLLFHYSG 90 (321)
Q Consensus 74 l~~~~~~~D~v~~yfSG 90 (321)
.++++++||.+|||-||
T Consensus 36 ~l~~mk~GD~vifY~s~ 52 (143)
T PF01878_consen 36 NLKRMKPGDKVIFYHSG 52 (143)
T ss_dssp HHHC--TT-EEEEEETS
T ss_pred hhhcCCCCCEEEEEEcC
Confidence 45589999999999999
No 33
>PF09827 CRISPR_Cas2: CRISPR associated protein Cas2; InterPro: IPR019199 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages. ; PDB: 3EXC_X 2I0X_A 3OQ2_B 3UI3_A 1ZPW_X 2I8E_A 2IVY_A.
Probab=40.64 E-value=79 Score=22.79 Aligned_cols=51 Identities=10% Similarity=0.099 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhcCCCCC-cEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCCCC-CEEEEEe
Q 020767 29 NDVLAMRDVIINRFGFDPN-HIELLTDAPGSSVMPTGANIKAALDRMVSKAEAG-DVLLFHY 88 (321)
Q Consensus 29 ~Da~~~~~~L~~~~gf~~~-~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~-D~v~~yf 88 (321)
.....+++.|++ +|...+ .|... + .|..++...+..+...+.++ |.+.+|-
T Consensus 14 k~~~kv~k~L~~-~g~~iQ~SVf~~-~-------~~~~~~~~l~~~l~~~i~~~~d~i~i~~ 66 (78)
T PF09827_consen 14 KRRNKVRKILKS-YGTRIQYSVFEG-N-------LTNAELRKLRRELEKLIDPDEDSIRIYP 66 (78)
T ss_dssp HHHHHHHHHHHH-TTEEEETTEEEE-E-------E-HHHHHHHHHHHHHHSCTTTCEEEEEE
T ss_pred HHHHHHHHHHHH-hCccccceEEEE-E-------cCHHHHHHHHHHHHhhCCCCCCEEEEEE
Confidence 567889999986 774322 24333 2 35566666666666667777 8887774
No 34
>PF12070 DUF3550: Protein of unknown function (DUF3550/UPF0682); InterPro: IPR022709 This family of proteins is functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 249 to 606 amino acids in length.
Probab=40.12 E-value=1.4e+02 Score=30.23 Aligned_cols=37 Identities=22% Similarity=0.184 Sum_probs=32.9
Q ss_pred CCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCccC
Q 020767 60 VMPTGANIKAALDRMVSKAEAGDVLLFHYSGHGTRIP 96 (321)
Q Consensus 60 ~~~T~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~ 96 (321)
..||-.++...|....+.+-++-.+++|.|.+|....
T Consensus 292 YrPT~sqll~~LAt~~kELP~n~~lLlYlSA~G~~~~ 328 (513)
T PF12070_consen 292 YRPTFSQLLAFLATAFKELPPNGALLLYLSADGCFST 328 (513)
T ss_pred ecCCHHHHHHHHHHHHHhcCCCceEEEEEeccCcccC
Confidence 4689999999999999999999999999999997543
No 35
>PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C50 (separase family, clan CD). The active site residues for members of this family and family C14 occur in the same order in the sequence: H,C. The separases are caspase-like proteases, which plays a central role in the chromosome segregation. In yeast they cleave the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, separase is inactivated by the securin/cut2 protein, which probably covers its active site. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0005634 nucleus
Probab=38.36 E-value=61 Score=31.41 Aligned_cols=24 Identities=46% Similarity=0.808 Sum_probs=14.6
Q ss_pred CcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCc
Q 020767 62 PTGANIKAALDRMVSKAEAGDVLLFHYSGHGTR 94 (321)
Q Consensus 62 ~T~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~ 94 (321)
||.+.+.++|. ..| +|.|.|||.-
T Consensus 297 P~~~e~~~~l~-------~~d--lf~Y~GHG~G 320 (383)
T PF03568_consen 297 PTEEEFLQALT-------SSD--LFLYCGHGSG 320 (383)
T ss_pred CCHHHHHHHHH-------hCC--eEEEecCCcH
Confidence 56655555553 334 4558899985
No 36
>PF05066 HARE-HTH: HB1, ASXL, restriction endonuclease HTH domain; InterPro: IPR007759 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The delta protein is a dispensable subunit of Bacillus subtilis RNA polymerase (RNAP) that has major effects on the biochemical properties of the purified enzyme. In the presence of delta, RNAP displays an increased specificity of transcription, a decreased affinity for nucleic acids, and an increased efficiency of RNA synthesis because of enhanced recycling []. The delta protein, contains two distinct regions, an N-terminal domain and a glutamate and aspartate residue-rich C-terminal region [].; GO: 0003677 DNA binding, 0006351 transcription, DNA-dependent; PDB: 2KRC_A.
Probab=37.01 E-value=34 Score=24.43 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCcc
Q 020767 264 FSNAVQRVLKENSGPLSNKEVVLMARKILKEQRFEQHP 301 (321)
Q Consensus 264 FT~aLl~~L~~~~~~~t~~~L~~~v~~~v~~~~~~Q~P 301 (321)
|..+..++|++.+.++++.||.+.+.+.-.-....++|
T Consensus 3 ~~eaa~~vL~~~~~pm~~~eI~~~i~~~~~~~~~~k~p 40 (72)
T PF05066_consen 3 FKEAAYEVLEEAGRPMTFKEIWEEIQERGLYKKSGKTP 40 (72)
T ss_dssp HHHHHHHHHHHH-S-EEHHHHHHHHHHHHTS---GGGG
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHHHhCCCCcccCCH
Confidence 56778889988888899999999887653211125667
No 37
>TIGR02806 clostrip clostripain. Clostripain is a cysteine protease characterized from Clostridium histolyticum, and also known from Clostridium perfringens. It is a heterodimer processed from a single precursor polypeptide, specific for Arg-|-Xaa peptide bonds. The older term alpha-clostripain refers to the most active, most reduced form, rather than to the product of one of several different genes. Clostripain belongs to the peptidase family C11, or clostripain family (see pfam03415).
Probab=36.87 E-value=1.2e+02 Score=30.10 Aligned_cols=80 Identities=11% Similarity=0.044 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhCCCCCEEEEEeeCCCCccCCCCCCCCCCCCCceEEcCCC---------CCCcHHHHHHHHHhCCCC
Q 020767 64 GANIKAALDRMVSKAEAGDVLLFHYSGHGTRIPSLRPIWPFRQQDEAIVPCDF---------NLITDLDFRQLVNRLPKG 134 (321)
Q Consensus 64 ~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~~~~~g~~~~~~~~~l~p~D~---------~~i~~~~l~~ll~~l~~~ 134 (321)
.+.+.+-|++..... |-|.-.+-+..||.-.... ..... . ...-+.+|. +.+...+|.++|+.- .
T Consensus 96 p~tLt~FL~~~~~~y-PAd~Y~LIiwnHG~GW~p~-~~~~~-~-~~r~i~wDdt~~~~~g~~D~L~~~EI~daL~~~--~ 169 (476)
T TIGR02806 96 AETLKKFIDFCKKNY-EADKYMLIMANHGGGAKDD-KDRAP-R-LNKAICWDDSNLDKNGEADCLYMGEISDHLTED--E 169 (476)
T ss_pred HHHHHHHHHHHHhhC-cccceeEEEEeCCCCCcCC-Ccccc-c-ccccceeccCCCCcCccccccchHHHHHHhccC--C
Confidence 345555566665543 5566666677899765532 10000 0 000122222 123345777776542 1
Q ss_pred CeEEEEEeCCCCCcc
Q 020767 135 ASFTVFSDSCHSGGL 149 (321)
Q Consensus 135 ~~v~~ilD~C~SG~~ 149 (321)
.--++.||+|+-+++
T Consensus 170 k~D~I~FDAClM~sV 184 (476)
T TIGR02806 170 SVDLLAFDACLMGNA 184 (476)
T ss_pred ceeEEEEchhcccHH
Confidence 223799999999986
No 38
>PF10264 Stork_head: Winged helix Storkhead-box1 domain; InterPro: IPR019391 In humans the Storkhead-box protein controls polyploidization of extravillus trophoblast and is implicated in pre-eclampsia []. This entry represents the conserved N-terminal winged-helix domain, which is likely to bind DNA.
Probab=36.67 E-value=1e+02 Score=22.95 Aligned_cols=45 Identities=16% Similarity=0.318 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCCCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCcc
Q 020767 31 VLAMRDVIINRFGFDPNHIELLTDAPGSSVMPTGANIKAALDRMVSKAEAGDVLLFHYSGHGTRI 95 (321)
Q Consensus 31 a~~~~~~L~~~~gf~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~ 95 (321)
.+.+.+.|.+ .|+. |. .|+.+-|.++|..|++.-+ +|+.|+|+..
T Consensus 32 ~E~l~~~L~~--~yp~--i~----------~Ps~e~l~~~L~~Li~erk------IY~tg~GYfi 76 (80)
T PF10264_consen 32 QETLREHLRK--HYPG--IA----------IPSQEVLYNTLGTLIKERK------IYHTGEGYFI 76 (80)
T ss_pred HHHHHHHHHH--hCCC--CC----------CCCHHHHHHHHHHHHHcCc------eeeCCCceEe
Confidence 4567777766 3442 21 1789999999999987644 8999999864
No 39
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.31 E-value=44 Score=27.02 Aligned_cols=58 Identities=10% Similarity=0.234 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHhCCCCCEEEEEeeCCCCccCCCCCCCCCCCCCceEEcCCCCCCc-HHHHHHHHHhCCCCCeE
Q 020767 66 NIKAALDRMVSKAEAGDVLLFHYSGHGTRIPSLRPIWPFRQQDEAIVPCDFNLIT-DLDFRQLVNRLPKGASF 137 (321)
Q Consensus 66 ~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~~~~~g~~~~~~~~~l~p~D~~~i~-~~~l~~ll~~l~~~~~v 137 (321)
...+.|++++++...|+.+++||.|- ..+. .| +.+||. ++. .--|.+.|+..+..+++
T Consensus 10 ~g~e~~~~~~~~~~n~~~ifvlF~gs---kd~~-tG-------qSWCPd---CV~AEPvi~~alk~ap~~~~~ 68 (128)
T KOG3425|consen 10 PGYESFEETLKNVENGKTIFVLFLGS---KDDT-TG-------QSWCPD---CVAAEPVINEALKHAPEDVHF 68 (128)
T ss_pred chHHHHHHHHHHHhCCceEEEEEecc---cCCC-CC-------CcCCch---HHHhhHHHHHHHHhCCCceEE
Confidence 34577888888888899999999882 2121 12 567773 222 23356777766666553
No 40
>PRK07550 hypothetical protein; Provisional
Probab=34.93 E-value=1.9e+02 Score=27.46 Aligned_cols=28 Identities=7% Similarity=0.003 Sum_probs=18.8
Q ss_pred CcHHHHHHHHHhCCCCCeEEEEEeCCCCC
Q 020767 119 ITDLDFRQLVNRLPKGASFTVFSDSCHSG 147 (321)
Q Consensus 119 i~~~~l~~ll~~l~~~~~v~~ilD~C~SG 147 (321)
++..++..+++-.. ..++++|.|.||+.
T Consensus 180 ~~~~~~~~i~~~~~-~~~~~iI~Dd~y~~ 207 (386)
T PRK07550 180 YPPELLHELYDLAR-RHGIALILDETYRD 207 (386)
T ss_pred cCHHHHHHHHHHHH-HcCeEEEEeccchh
Confidence 45556666655443 34678999999975
No 41
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=34.64 E-value=2.1e+02 Score=26.19 Aligned_cols=47 Identities=23% Similarity=0.432 Sum_probs=37.7
Q ss_pred EEEEeecCCCC-CCCCcchHHHHHHHHHHHHHh---cCCCCCcEEEeeCCC
Q 020767 10 AVLVGCNYPNT-KNELHGCINDVLAMRDVIINR---FGFDPNHIELLTDAP 56 (321)
Q Consensus 10 Al~IGi~y~~~-~~~L~~~~~Da~~~~~~L~~~---~gf~~~~i~~L~d~~ 56 (321)
+.+|-+||.-. ..+.+.+..|+.+..+++.++ +|+++++|.+.-++-
T Consensus 111 ~~vv~vdYrlaPe~~~p~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSA 161 (312)
T COG0657 111 AVVVSVDYRLAPEHPFPAALEDAYAAYRWLRANAAELGIDPSRIAVAGDSA 161 (312)
T ss_pred CEEEecCCCCCCCCCCCchHHHHHHHHHHHHhhhHhhCCCccceEEEecCc
Confidence 56778888643 457889999999999999864 689999999988863
No 42
>PRK05957 aspartate aminotransferase; Provisional
Probab=33.54 E-value=2e+02 Score=27.45 Aligned_cols=30 Identities=10% Similarity=-0.085 Sum_probs=19.8
Q ss_pred CcHHHHHHHHHhCCCCCeEEEEEeCCCCCcc
Q 020767 119 ITDLDFRQLVNRLPKGASFTVFSDSCHSGGL 149 (321)
Q Consensus 119 i~~~~l~~ll~~l~~~~~v~~ilD~C~SG~~ 149 (321)
++..++.++++-.. ...+++|.|.||+.-.
T Consensus 177 ~~~~~~~~i~~~a~-~~~~~li~De~y~~~~ 206 (389)
T PRK05957 177 YPEALLRAVNQICA-EHGIYHISDEAYEYFT 206 (389)
T ss_pred cCHHHHHHHHHHHH-HcCcEEEEeccchhcc
Confidence 45566776665443 2457899999987543
No 43
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=33.07 E-value=3e+02 Score=25.11 Aligned_cols=61 Identities=20% Similarity=0.310 Sum_probs=36.3
Q ss_pred CCCcchHHHHHHHHHHHHHhcCCCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCc
Q 020767 22 NELHGCINDVLAMRDVIINRFGFDPNHIELLTDAPGSSVMPTGANIKAALDRMVSKAEAGDVLLFHYSGHGTR 94 (321)
Q Consensus 22 ~~L~~~~~Da~~~~~~L~~~~gf~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~ 94 (321)
.+|..+..-.....+.+.+.+|-+ +..++++. +...+...+..+ +++||.|++---+|...
T Consensus 52 d~l~~~~g~i~~~~~~~A~~~ga~--~~~~~~~G-------st~a~~~~l~al---~~~gd~Vlv~~~~h~s~ 112 (294)
T cd00615 52 DDLLDPTGPIKEAQELAARAFGAK--HTFFLVNG-------TSSSNKAVILAV---CGPGDKILIDRNCHKSV 112 (294)
T ss_pred CCCCCCChHHHHHHHHHHHHhCCC--CEEEEcCc-------HHHHHHHHHHHc---CCCCCEEEEeCCchHHH
Confidence 455444444555555555555643 46666654 344454555443 57999999988888643
No 44
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=32.67 E-value=3.5e+02 Score=25.86 Aligned_cols=106 Identities=20% Similarity=0.296 Sum_probs=60.3
Q ss_pred cchHHHHHHHHHHHHHhcC-CCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEee----------CCCC
Q 020767 25 HGCINDVLAMRDVIINRFG-FDPNHIELLTDAPGSSVMPTGANIKAALDRMVSKAEAGDVLLFHYS----------GHGT 93 (321)
Q Consensus 25 ~~~~~Da~~~~~~L~~~~g-f~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~D~v~~yfS----------GHG~ 93 (321)
+++..+...+++.+.+.+| .++++|.+-.. .+.++..+-+... .+||.+++-.- .||.
T Consensus 53 rYPd~~~~~l~~a~a~~~~~~~~~~V~~gnG---------sde~i~~l~~~~~--~~gd~vl~~~Ptf~~Y~~~a~~~g~ 121 (356)
T COG0079 53 RYPDPDYRELRAALAEYYGVVDPENVLVGNG---------SDELIELLVRAFV--EPGDTVLIPEPTFSMYEIAAQLAGA 121 (356)
T ss_pred cCCCCcHHHHHHHHHHHhCCCCcceEEEcCC---------hHHHHHHHHHHhh--cCCCEEEEcCCChHHHHHHHHhcCC
Confidence 3455567788888877788 66666654332 3566666655543 47898887632 2331
Q ss_pred c---cCCCCCCCCCC----------CCC-ceEE-cCC--CCCCcHHHHHHHHHhCCCCCeEEEEEeCCC
Q 020767 94 R---IPSLRPIWPFR----------QQD-EAIV-PCD--FNLITDLDFRQLVNRLPKGASFTVFSDSCH 145 (321)
Q Consensus 94 ~---~~~~~~g~~~~----------~~~-~~l~-p~D--~~~i~~~~l~~ll~~l~~~~~v~~ilD~C~ 145 (321)
. .+-. . +..+ ..+ -+++ |.+ ++.++..+|..+++.++. +.++|+|=-|
T Consensus 122 ~~~~v~~~-~-~~~d~~~~~~~~~~~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~--~~~vVvDEAY 186 (356)
T COG0079 122 EVVKVPLK-E-FRLDLDAILAAIRDKTKLVFLCNPNNPTGTLLPREELRALLEALPE--GGLVVIDEAY 186 (356)
T ss_pred eEEEeccc-c-cccCHHHHHHhhhcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCC--CcEEEEeCch
Confidence 1 1111 0 0000 011 2222 221 235788999999999864 5789999654
No 45
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=31.99 E-value=83 Score=26.95 Aligned_cols=53 Identities=17% Similarity=0.337 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHhCC--CCCEEEEEeeCCCCccCCCCCCCCCCCCCceEEcCCCCCCcHHHHHHHHHhCCCCCeE
Q 020767 64 GANIKAALDRMVSKAE--AGDVLLFHYSGHGTRIPSLRPIWPFRQQDEAIVPCDFNLITDLDFRQLVNRLPKGASF 137 (321)
Q Consensus 64 ~~~I~~~l~~l~~~~~--~~D~v~~yfSGHG~~~~~~~~g~~~~~~~~~l~p~D~~~i~~~~l~~ll~~l~~~~~v 137 (321)
+.++.++++...+.+. +-|+|++ |+.+...+...|+.+++.++|+.-+....+
T Consensus 78 ~~~~~~~~~~a~~~i~~~~~dlvIL---------------------DEi~~a~~~gll~~~~v~~~l~~rp~~~ev 132 (172)
T PF02572_consen 78 RAAAREGLEEAKEAISSGEYDLVIL---------------------DEINYAVDYGLLSEEEVLDLLENRPESLEV 132 (172)
T ss_dssp HHHHHHHHHHHHHHTT-TT-SEEEE---------------------ETHHHHHHTTSS-HHHHHHHHHTS-TT-EE
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEE---------------------cchHHHhHCCCccHHHHHHHHHcCCCCeEE
Confidence 4667777777666654 4578776 677778888889999999999977655554
No 46
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=31.81 E-value=3.2e+02 Score=23.75 Aligned_cols=74 Identities=18% Similarity=0.176 Sum_probs=37.8
Q ss_pred cEEEEEEeecCCCCCCCCcchHHHHHHHHHHHHH-----hcCCCCCcEEEeeCCCCC-CCCCcHHHHHHHH-HHHHHhCC
Q 020767 7 KRIAVLVGCNYPNTKNELHGCINDVLAMRDVIIN-----RFGFDPNHIELLTDAPGS-SVMPTGANIKAAL-DRMVSKAE 79 (321)
Q Consensus 7 ~~~Al~IGi~y~~~~~~L~~~~~Da~~~~~~L~~-----~~gf~~~~i~~L~d~~~~-~~~~T~~~I~~~l-~~l~~~~~ 79 (321)
.++.+++|+. +...+|..+...|.. +.|++ ...+.++... ...++-......+ +++....+
T Consensus 41 ~~rI~~~G~G---------gSa~~A~~~a~~l~~~~~~~r~gl~---a~~l~~d~~~~ta~and~~~~~~f~~ql~~~~~ 108 (196)
T PRK10886 41 GNKILCCGNG---------TSAANAQHFAASMINRFETERPSLP---AIALNTDNVVLTAIANDRLHDEVYAKQVRALGH 108 (196)
T ss_pred CCEEEEEECc---------HHHHHHHHHHHHHhccccccCCCcc---eEEecCcHHHHHHHhccccHHHHHHHHHHHcCC
Confidence 4677888884 345677788776643 34555 3334332100 0000011122333 34555678
Q ss_pred CCCEEEEEeeCCCC
Q 020767 80 AGDVLLFHYSGHGT 93 (321)
Q Consensus 80 ~~D~v~~yfSGHG~ 93 (321)
+||++++ +|+-|.
T Consensus 109 ~gDvli~-iS~SG~ 121 (196)
T PRK10886 109 AGDVLLA-ISTRGN 121 (196)
T ss_pred CCCEEEE-EeCCCC
Confidence 8998776 666444
No 47
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=31.60 E-value=60 Score=27.84 Aligned_cols=33 Identities=27% Similarity=0.382 Sum_probs=24.5
Q ss_pred CceEEcCCCCCCcHHHHHHHHHhCC-CCCeEEEEE
Q 020767 108 DEAIVPCDFNLITDLDFRQLVNRLP-KGASFTVFS 141 (321)
Q Consensus 108 ~~~l~p~D~~~i~~~~l~~ll~~l~-~~~~v~~il 141 (321)
|++|+|+|.... ..++.+|+..++ ++.+++++.
T Consensus 36 DNTLv~wd~~~~-tpe~~~W~~e~k~~gi~v~vvS 69 (175)
T COG2179 36 DNTLVPWDNPDA-TPELRAWLAELKEAGIKVVVVS 69 (175)
T ss_pred cCceecccCCCC-CHHHHHHHHHHHhcCCEEEEEe
Confidence 789999997654 457899998886 566655543
No 48
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=31.42 E-value=1.2e+02 Score=28.42 Aligned_cols=53 Identities=15% Similarity=0.341 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCCCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCC
Q 020767 33 AMRDVIINRFGFDPNHIELLTDAPGSSVMPTGANIKAALDRMVSKAEAGDVLLFHYSGH 91 (321)
Q Consensus 33 ~~~~~L~~~~gf~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~D~v~~yfSGH 91 (321)
+|.+.|.+ .||..-.+..-.+.. -....+...+..++..+++||+|++++...
T Consensus 23 d~~~~~~~-~g~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Dvv~~~~P~~ 75 (333)
T PRK09814 23 DVTKIAKQ-LGFEELGIYFYNIKR-----DSLSERSKRLDGILASLKPGDIVIFQFPTW 75 (333)
T ss_pred HHHHHHHH-CCCeEeEEEeccccc-----chHHHHHHHHHHHHhcCCCCCEEEEECCCC
Confidence 45566664 798742232211111 124556667777888899999999988654
No 49
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=30.78 E-value=2.7e+02 Score=26.37 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHHHHhcCCCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCc
Q 020767 26 GCINDVLAMRDVIINRFGFDPNHIELLTDAPGSSVMPTGANIKAALDRMVSKAEAGDVLLFHYSGHGTR 94 (321)
Q Consensus 26 ~~~~Da~~~~~~L~~~~gf~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~ 94 (321)
|...-.+++++.|.+.+|.+.+++.++.+. +. ....++..+.....+||.|++.=..||..
T Consensus 61 g~~~~~~~~~~~la~~~g~~~~~v~~~~~g-------~~-~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~ 121 (398)
T cd00613 61 GRLQALFELQTMLCELTGMDVANASLQDEA-------TA-AAEAAGLAAIRAYHKRNKVLVPDSAHPTN 121 (398)
T ss_pred hHHHHHHHHHHHHHHHHCCCccceeccCch-------HH-HHHHHHHHHHhcccCCCEEEEcCccCcch
Confidence 444455678888888788876566555332 22 33333333332323599999988888875
No 50
>PF02698 DUF218: DUF218 domain; InterPro: IPR003848 This domain of unknown function is found in several uncharacterised proteins.; PDB: 3CA8_A.
Probab=29.99 E-value=1.9e+02 Score=23.46 Aligned_cols=44 Identities=23% Similarity=0.207 Sum_probs=28.7
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHH
Q 020767 27 CINDVLAMRDVIINRFGFDPNHIELLTDAPGSSVMPTGANIKAALDRMVS 76 (321)
Q Consensus 27 ~~~Da~~~~~~L~~~~gf~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~ 76 (321)
....++.|+++|.+. |++.+.|.+..... -|.+|+....+.+.+
T Consensus 52 ~~~ea~~~~~~l~~~-gvp~~~I~~e~~s~-----~T~ena~~~~~~~~~ 95 (155)
T PF02698_consen 52 GRSEAEAMRDYLIEL-GVPEERIILEPKST-----NTYENARFSKRLLKE 95 (155)
T ss_dssp TS-HHHHHHHHHHHT----GGGEEEE---------SHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhc-ccchheeEccCCCC-----CHHHHHHHHHHHHHh
Confidence 678999999999985 99988776544432 488999988877653
No 51
>TIGR01573 cas2 CRISPR-associated endoribonuclease Cas2. This model describes most members of the family of Cas2, one of the first four protein families found to mark prokaryotic genomes that contain multiple CRISPR elements. It is an endoribonuclease, capable of cleaving single-stranded RNA. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats. The cas genes are found near the repeats. A distinct branch of the Cas2 family shows a very low level of sequence identity and is modeled by TIGR01873 instead.
Probab=29.43 E-value=2.2e+02 Score=21.59 Aligned_cols=56 Identities=7% Similarity=0.093 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEeeCCCCCCCCCcHHHHHHHH-HHHHHhCCCCCEEEEEeeC
Q 020767 28 INDVLAMRDVIINRFGFDPNHIELLTDAPGSSVMPTGANIKAAL-DRMVSKAEAGDVLLFHYSG 90 (321)
Q Consensus 28 ~~Da~~~~~~L~~~~gf~~~~i~~L~d~~~~~~~~T~~~I~~~l-~~l~~~~~~~D~v~~yfSG 90 (321)
......+++.|.+ +||..-+=.+..-. .|...+.+.+ +.+..-+.+.|.|.+|--+
T Consensus 15 ~k~r~kv~k~L~~-~G~~rvQ~SVf~~~------~~~~~~~~~l~~~l~~~i~~~dsv~i~~l~ 71 (95)
T TIGR01573 15 RKRRRKLRKLLEK-YGLQRVQYSVFEGI------LEPNQLARKLIERLKRIIPDEGDIRIYPLT 71 (95)
T ss_pred HHHHHHHHHHHHH-cchhheeccEEEEE------cCHHHHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 4577889999986 89654332232222 3555555333 3344444556777777544
No 52
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=29.16 E-value=1.3e+02 Score=25.98 Aligned_cols=53 Identities=11% Similarity=0.242 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHhC--CCCCEEEEEeeCCCCccCCCCCCCCCCCCCceEEcCCCCCCcHHHHHHHHHhCCCCCeE
Q 020767 64 GANIKAALDRMVSKA--EAGDVLLFHYSGHGTRIPSLRPIWPFRQQDEAIVPCDFNLITDLDFRQLVNRLPKGASF 137 (321)
Q Consensus 64 ~~~I~~~l~~l~~~~--~~~D~v~~yfSGHG~~~~~~~~g~~~~~~~~~l~p~D~~~i~~~~l~~ll~~l~~~~~v 137 (321)
+..+.+.++...+.+ .+-|.|++ |+.+...+...|+.+++.++|+.-+....|
T Consensus 97 ~~~~~~~~~~a~~~l~~~~~dlvVL---------------------DEi~~Al~~gli~~eeVl~~L~~rp~~~ev 151 (178)
T PRK07414 97 KKALQELWQYTQAVVDEGRYSLVVL---------------------DELSLAIQFGLIPETEVLEFLEKRPSHVDV 151 (178)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEE---------------------ehhHHHHHCCCccHHHHHHHHHhCCCCCEE
Confidence 455666666555544 34577776 667777788889999999999988766654
No 53
>COG2830 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.55 E-value=47 Score=28.42 Aligned_cols=39 Identities=18% Similarity=0.386 Sum_probs=23.4
Q ss_pred CCCCCEEEEEeeCCCCccCCCCCCCCCCCCCceEEcCCCC
Q 020767 78 AEAGDVLLFHYSGHGTRIPSLRPIWPFRQQDEAIVPCDFN 117 (321)
Q Consensus 78 ~~~~D~v~~yfSGHG~~~~~~~~g~~~~~~~~~l~p~D~~ 117 (321)
.+.||.+++||+|-|......+.-..+.. ...++++|++
T Consensus 7 ~~qgd~LIvyFaGwgtpps~v~HLilpeN-~dl~lcYDY~ 45 (214)
T COG2830 7 CKQGDHLIVYFAGWGTPPSAVNHLILPEN-HDLLLCYDYQ 45 (214)
T ss_pred ecCCCEEEEEEecCCCCHHHHhhccCCCC-CcEEEEeehh
Confidence 35789999999999987543210000000 2356677775
No 54
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=28.33 E-value=1.3e+02 Score=26.27 Aligned_cols=53 Identities=13% Similarity=0.152 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhC--CCCCEEEEEeeCCCCccCCCCCCCCCCCCCceEEcCCCCCCcHHHHHHHHHhCCCCCeE
Q 020767 64 GANIKAALDRMVSKA--EAGDVLLFHYSGHGTRIPSLRPIWPFRQQDEAIVPCDFNLITDLDFRQLVNRLPKGASF 137 (321)
Q Consensus 64 ~~~I~~~l~~l~~~~--~~~D~v~~yfSGHG~~~~~~~~g~~~~~~~~~l~p~D~~~i~~~~l~~ll~~l~~~~~v 137 (321)
+..+.+.++...+.+ .+-|+|++ |+.+...+...|+.+++.++|+.-|....|
T Consensus 97 ~~~~~~~~~~a~~~l~~~~ydlvVL---------------------DEi~~Al~~gli~~eevi~~L~~rp~~~ev 151 (191)
T PRK05986 97 IAAAREGWEEAKRMLADESYDLVVL---------------------DELTYALKYGYLDVEEVLEALNARPGMQHV 151 (191)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEE---------------------ehhhHHHHCCCccHHHHHHHHHcCCCCCEE
Confidence 345555555555544 34477776 567777788889999999999887665554
No 55
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=27.37 E-value=73 Score=27.11 Aligned_cols=45 Identities=27% Similarity=0.499 Sum_probs=27.6
Q ss_pred EEEeecCCCC-CCCCcchHHHHHHHHHHHHHh---cCCCCCcEEEeeCC
Q 020767 11 VLVGCNYPNT-KNELHGCINDVLAMRDVIINR---FGFDPNHIELLTDA 55 (321)
Q Consensus 11 l~IGi~y~~~-~~~L~~~~~Da~~~~~~L~~~---~gf~~~~i~~L~d~ 55 (321)
.+|.++|.-. ..+.+.+..|+.+..++|.++ +|+++++|.+.-++
T Consensus 31 ~v~~~~Yrl~p~~~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~S 79 (211)
T PF07859_consen 31 VVVSIDYRLAPEAPFPAALEDVKAAYRWLLKNADKLGIDPERIVLIGDS 79 (211)
T ss_dssp EEEEEE---TTTSSTTHHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEET
T ss_pred EEEEeeccccccccccccccccccceeeeccccccccccccceEEeecc
Confidence 4666666532 345677777777777777764 56666677666654
No 56
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=27.26 E-value=1.9e+02 Score=26.90 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=19.8
Q ss_pred CcHHHHHHHHHhCCCCCeEEEEEeCCCCC
Q 020767 119 ITDLDFRQLVNRLPKGASFTVFSDSCHSG 147 (321)
Q Consensus 119 i~~~~l~~ll~~l~~~~~v~~ilD~C~SG 147 (321)
.+.+++.++++... .++++|+|.||+.
T Consensus 159 ~~~~~~~~l~~~~~--~~~~ii~D~~y~~ 185 (346)
T TIGR01141 159 LSRSDIEAVLERTP--EDALVVVDEAYGE 185 (346)
T ss_pred CCHHHHHHHHHhCC--CCcEEEEECchhh
Confidence 56677888877653 3578889999984
No 57
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=26.99 E-value=1.1e+02 Score=26.92 Aligned_cols=20 Identities=5% Similarity=0.094 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHhcCCCC
Q 020767 27 CINDVLAMRDVIINRFGFDP 46 (321)
Q Consensus 27 ~~~Da~~~~~~L~~~~gf~~ 46 (321)
...+...+...|.++.++..
T Consensus 17 ~p~~l~~L~~~l~~~t~~~~ 36 (207)
T PF13709_consen 17 SPAGLRNLSRFLNQRTSLEV 36 (207)
T ss_pred chhHHHHHHHHHHHHhCCCc
Confidence 35566777777777666553
No 58
>COG2947 Uncharacterized conserved protein [Function unknown]
Probab=26.48 E-value=57 Score=27.15 Aligned_cols=27 Identities=15% Similarity=0.210 Sum_probs=20.1
Q ss_pred HHHHHHHH-HHHHHhCCCCCEEEEEeeC
Q 020767 64 GANIKAAL-DRMVSKAEAGDVLLFHYSG 90 (321)
Q Consensus 64 ~~~I~~~l-~~l~~~~~~~D~v~~yfSG 90 (321)
.+.+++.- +.+.+.++.||.+|||-|-
T Consensus 27 W~GVRNYqARNfmR~M~iGD~~fFYHSN 54 (156)
T COG2947 27 WDGVRNYQARNFMRDMKIGDLGFFYHSN 54 (156)
T ss_pred ccchHHHHHHHHHHhcccCceEEEEecC
Confidence 34555544 5677789999999999775
No 59
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=25.90 E-value=91 Score=22.93 Aligned_cols=55 Identities=24% Similarity=0.302 Sum_probs=34.4
Q ss_pred HHHhcCCCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHH--hCCCCCEEEEEeeCCCCcc
Q 020767 38 IINRFGFDPNHIELLTDAPGSSVMPTGANIKAALDRMVS--KAEAGDVLLFHYSGHGTRI 95 (321)
Q Consensus 38 L~~~~gf~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~--~~~~~D~v~~yfSGHG~~~ 95 (321)
+.+.+|++++.+..-...-+ ..--..+.-.|..+.+ ++++||.+++.=.|-|...
T Consensus 27 ~~~~lgi~~~~~~~~~~~~G---n~~sa~~~~~L~~~~~~g~~~~Gd~vl~~~~G~G~~~ 83 (90)
T PF08541_consen 27 IAKRLGIPPERFPDNLAEYG---NTGSASIPINLADALEEGRIKPGDRVLLVGFGAGFSW 83 (90)
T ss_dssp HHHHHTS-GGGBE-THHHH----B-GGGHHHHHHHHHHHTTSSCTTEEEEEEEEETTTEE
T ss_pred HHHHcCCcHHHHHHHHhccC---cchhhhHHHHHHHHHHcCCCCCCCEEEEEEEEhhhee
Confidence 44567888775543221100 1223567777777777 7999999999988888753
No 60
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=25.42 E-value=85 Score=30.02 Aligned_cols=34 Identities=35% Similarity=0.498 Sum_probs=21.1
Q ss_pred cHHHHHHHHHHHHHh--CCCCCEEEEEeeCCCCccC
Q 020767 63 TGANIKAALDRMVSK--AEAGDVLLFHYSGHGTRIP 96 (321)
Q Consensus 63 T~~~I~~~l~~l~~~--~~~~D~v~~yfSGHG~~~~ 96 (321)
|.-.|..+++...+. -.+.-+++|-|||||..+-
T Consensus 384 saHAi~~aid~A~~a~~~geekvI~fnlSGHGllDL 419 (432)
T COG1350 384 SAHAIKAAIDEALKAREEGEEKVILFNLSGHGLLDL 419 (432)
T ss_pred chhhHHHHHHHHHhccccCceeEEEEeccCccccch
Confidence 344555555543332 2233599999999998754
No 61
>COG2194 Predicted membrane-associated, metal-dependent hydrolase [General function prediction only]
Probab=25.28 E-value=86 Score=32.09 Aligned_cols=16 Identities=25% Similarity=0.501 Sum_probs=13.8
Q ss_pred CEEEEEeeCCCCccCC
Q 020767 82 DVLLFHYSGHGTRIPS 97 (321)
Q Consensus 82 D~v~~yfSGHG~~~~~ 97 (321)
+.++||+|-||....+
T Consensus 445 ~~~liY~SDHGEslgE 460 (555)
T COG2194 445 NTSLIYFSDHGESLGE 460 (555)
T ss_pred CeEEEEEcCccHhhcc
Confidence 8999999999997644
No 62
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=25.28 E-value=2e+02 Score=23.30 Aligned_cols=46 Identities=20% Similarity=0.346 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEE
Q 020767 29 NDVLAMRDVIINRFGFDPNHIELLTDAPGSSVMPTGANIKAALDRMVSKAEAGDVLLF 86 (321)
Q Consensus 29 ~Da~~~~~~L~~~~gf~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~D~v~~ 86 (321)
.....+.++|.+ +|+......++.| ..+.|.++|...+.+. |+|+.
T Consensus 17 ~n~~~l~~~l~~-~G~~v~~~~~v~D--------d~~~i~~~l~~~~~~~---D~Vit 62 (144)
T PF00994_consen 17 SNGPFLAALLEE-LGIEVIRYGIVPD--------DPDAIKEALRRALDRA---DLVIT 62 (144)
T ss_dssp HHHHHHHHHHHH-TTEEEEEEEEEES--------SHHHHHHHHHHHHHTT---SEEEE
T ss_pred hHHHHHHHHHHH-cCCeeeEEEEECC--------CHHHHHHHHHhhhccC---CEEEE
Confidence 345568888885 8987655666766 4689999997666554 66655
No 63
>KOG4530 consensus Predicted flavoprotein [General function prediction only]
Probab=25.22 E-value=97 Score=26.40 Aligned_cols=30 Identities=33% Similarity=0.519 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeCCCCc
Q 020767 65 ANIKAALDRMVSKAEAGDVLLFHYSGHGTR 94 (321)
Q Consensus 65 ~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~ 94 (321)
+-++++|+|+...-.---.+++-|-|||.-
T Consensus 103 A~LKNAlD~lyheW~gKPalivSyGGhGGg 132 (199)
T KOG4530|consen 103 APLKNALDWLYHEWAGKPALIVSYGGHGGG 132 (199)
T ss_pred hHHHHHHHHhhhhhcCCceEEEEecCCCCc
Confidence 567889998887544446899999999985
No 64
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=25.17 E-value=2.9e+02 Score=27.00 Aligned_cols=55 Identities=11% Similarity=0.233 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCC----CCCEEEEEeeCCCCcc
Q 020767 31 VLAMRDVIINRFGFDPNHIELLTDAPGSSVMPTGANIKAALDRMVSKAE----AGDVLLFHYSGHGTRI 95 (321)
Q Consensus 31 a~~~~~~L~~~~gf~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~----~~D~v~~yfSGHG~~~ 95 (321)
+..+.+.|++.+|- ..||. + ..||.++..+|....++++ +-..-++.|+|+-...
T Consensus 33 i~~v~~~l~~e~~~-a~nik---s------~~~r~~v~~ai~~~~~rlk~~~~~p~nGlv~f~g~~~~~ 91 (403)
T TIGR03676 33 ISDVVNQLRDEYSQ-AANIK---S------KQTRKNVQSAIESIMQRLKLYKKPPENGLVLFAGMVPTG 91 (403)
T ss_pred HHHHHHHHHHHHhh-hhhhh---h------hhhHHHHHHHHHHHHHHHhccCCCCCCeEEEEEeeecCC
Confidence 33455667766664 34553 1 1589999999988777654 4567788889987653
No 65
>PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana. The function of this family is unknown.
Probab=24.87 E-value=4.2e+02 Score=22.27 Aligned_cols=72 Identities=14% Similarity=0.063 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeCCCCccCCCCCCCCCCCCCceEEcCCCCCCcHHHHHHHHHhCCC-CCeEEEEE
Q 020767 65 ANIKAALDRMVSKAEAGDVLLFHYSGHGTRIPSLRPIWPFRQQDEAIVPCDFNLITDLDFRQLVNRLPK-GASFTVFS 141 (321)
Q Consensus 65 ~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~~~~~g~~~~~~~~~l~p~D~~~i~~~~l~~ll~~l~~-~~~v~~il 141 (321)
..+...|..+. ...+-.+++.|=||+...... ......|.. ++-.....-.|+.|..++..+.. +.+++||-
T Consensus 29 ~~Li~~L~~y~--~~~~~~v~VVFDa~~~~~~~~-~~~~~~gi~--Vvft~~~~tAD~~Ie~~v~~~~~~~~~v~VVT 101 (166)
T PF05991_consen 29 ERLIEMLSEYA--QFSGYEVIVVFDAYKVPGGSE-EREEYGGIE--VVFTKEGETADDYIERLVRELKNRPRQVTVVT 101 (166)
T ss_pred HHHHHHHHHHh--cccCCEEEEEEeCCcCCCCCc-eeeeeCceE--EEECCCCCCHHHHHHHHHHHhccCCCeEEEEe
Confidence 34444444333 235688999999998776542 111111211 22221112236667788888764 55665553
No 66
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=24.83 E-value=2.3e+02 Score=26.45 Aligned_cols=45 Identities=16% Similarity=0.277 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCCCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEE
Q 020767 32 LAMRDVIINRFGFDPNHIELLTDAPGSSVMPTGANIKAALDRMVSKAEAGDVLLF 86 (321)
Q Consensus 32 ~~~~~~L~~~~gf~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~D~v~~ 86 (321)
..+++.+.+.+|.++++|.+.++. +.+.|...+..+ .++||.|++
T Consensus 72 ~~lr~~ia~~~~~~~~~i~~~~~G-------a~~~i~~~~~~~---~~~gd~vlv 116 (361)
T PRK00950 72 PELREALSKYTGVPVENIIVGGDG-------MDEVIDTLMRTF---IDPGDEVII 116 (361)
T ss_pred HHHHHHHHHHhCCCHHHEEEeCCC-------HHHHHHHHHHHh---cCCCCEEEE
Confidence 567777777778877777543432 333333333333 468898876
No 67
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=24.42 E-value=1.6e+02 Score=25.28 Aligned_cols=52 Identities=17% Similarity=0.171 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhC--CCCCEEEEEeeCCCCccCCCCCCCCCCCCCceEEcCCCCCCcHHHHHHHHHhCCCCCeE
Q 020767 65 ANIKAALDRMVSKA--EAGDVLLFHYSGHGTRIPSLRPIWPFRQQDEAIVPCDFNLITDLDFRQLVNRLPKGASF 137 (321)
Q Consensus 65 ~~I~~~l~~l~~~~--~~~D~v~~yfSGHG~~~~~~~~g~~~~~~~~~l~p~D~~~i~~~~l~~ll~~l~~~~~v 137 (321)
..+.+.++...+.+ ..-|+|++ |+.+...+...|+.+++.++|+.-|....|
T Consensus 80 ~~~~~~~~~a~~~l~~~~~DlvVL---------------------DEi~~A~~~gli~~~~v~~lL~~rp~~~ev 133 (173)
T TIGR00708 80 AIAKAAWQHAKEMLADPELDLVLL---------------------DELTYALKYGYLDVEEVVEALQERPGHQHV 133 (173)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEe---------------------hhhHHHHHCCCcCHHHHHHHHHhCCCCCEE
Confidence 44555555544444 34577776 567777778889999999999887766554
No 68
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=24.28 E-value=3.8e+02 Score=25.06 Aligned_cols=111 Identities=11% Similarity=0.109 Sum_probs=56.1
Q ss_pred CCcchHHHHHHHHHHHHHhcCCC----CCcEEEeeCCCCCCCCCcHHHHHHHHHHHHH------hCCCC--CEEEEEeeC
Q 020767 23 ELHGCINDVLAMRDVIINRFGFD----PNHIELLTDAPGSSVMPTGANIKAALDRMVS------KAEAG--DVLLFHYSG 90 (321)
Q Consensus 23 ~L~~~~~Da~~~~~~L~~~~gf~----~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~------~~~~~--D~v~~yfSG 90 (321)
..+-...+++.+.+.+++ .|+. +.....|.. |..+-....++.|.. .+.-+ -.++||--|
T Consensus 85 ~~~~~~~~~~~~g~~~~~-~~irls~Hp~y~inL~S-------~~~ev~e~Si~~L~~~~~~~~~lG~~~~~~vViHpG~ 156 (303)
T PRK02308 85 YIEPFKEELREIGEFIKE-HNIRLSFHPDQFVVLNS-------PKPEVVENSIKDLEYHAKLLDLMGIDDSSKINIHVGG 156 (303)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCCeeccChhhhcCCC-------CCHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCc
Confidence 445667889999998875 4542 222233332 233344444544433 22222 278887777
Q ss_pred CCCccCCCCCCC--------C-CCCCCceEEcC-CCCCCcHHHHHHHHHhCCCCCeEEEEEeCCCCCc
Q 020767 91 HGTRIPSLRPIW--------P-FRQQDEAIVPC-DFNLITDLDFRQLVNRLPKGASFTVFSDSCHSGG 148 (321)
Q Consensus 91 HG~~~~~~~~g~--------~-~~~~~~~l~p~-D~~~i~~~~l~~ll~~l~~~~~v~~ilD~C~SG~ 148 (321)
|... .. .+- . .......|++- |...-+..++..+++.+. +-++||+||--.
T Consensus 157 ~~~~-ke--~al~r~~~~l~~l~~~~~~~L~LEN~~~~~t~~ell~I~e~~~----ipv~~D~hH~~~ 217 (303)
T PRK02308 157 AYGD-KE--KALERFIENIKKLPESIKKRLTLENDDKTYTVEELLYICEKLG----IPVVFDYHHHMC 217 (303)
T ss_pred cCCC-HH--HHHHHHHHHHHHhhHHhCCEEEEeeCCCCCCHHHHHHHHHHcC----CCEEEeHHhhhh
Confidence 6311 00 000 0 00001233332 222356778888888773 238999999543
No 69
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=24.08 E-value=1.6e+02 Score=23.70 Aligned_cols=53 Identities=8% Similarity=0.169 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCC-CCCEEEEEeeCC
Q 020767 32 LAMRDVIINRFGFDPNHIELLTDAPGSSVMPTGANIKAALDRMVSKAE-AGDVLLFHYSGH 91 (321)
Q Consensus 32 ~~~~~~L~~~~gf~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~-~~D~v~~yfSGH 91 (321)
-.+...++++.+.+++++.+++++.- .+|- ..+..+.++-+ ++-.+++-|||-
T Consensus 54 ~qF~~iIRkrl~l~~~k~flfVnn~l---p~~s----~~mg~lYe~~KDeDGFLYi~Ys~e 107 (121)
T PTZ00380 54 AELEAAVRQALGTSAKKVTLAIEGST---PAVT----ATVGDIADACKRDDGFLYVSVRTE 107 (121)
T ss_pred HHHHHHHHHHcCCChhHEEEEECCcc---CCcc----chHHHHHHHhcCCCCeEEEEEccc
Confidence 34666677788888777888887631 1222 23444444433 344777777763
No 70
>PF14338 Mrr_N: Mrr N-terminal domain
Probab=23.50 E-value=1.5e+02 Score=22.19 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 020767 264 FSNAVQRVLKENSGPLSNKEVVLMARKIL 292 (321)
Q Consensus 264 FT~aLl~~L~~~~~~~t~~~L~~~v~~~v 292 (321)
|-..+|++|.+.++..+..|+.+.|.+.+
T Consensus 5 ~~~piL~~L~~~g~~~~~~ei~~~v~~~~ 33 (92)
T PF14338_consen 5 LMPPILEALKDLGGSASRKEIYERVAERF 33 (92)
T ss_pred HHHHHHHHHHHcCCCcCHHHHHHHHHHHh
Confidence 55678999999677789999999998765
No 71
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=22.39 E-value=3.5e+02 Score=25.42 Aligned_cols=56 Identities=14% Similarity=0.217 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCC
Q 020767 29 NDVLAMRDVIINRFGFDPNHIELLTDAPGSSVMPTGANIKAALDRMVSKAEAGDVLLFHYSGHG 92 (321)
Q Consensus 29 ~Da~~~~~~L~~~~gf~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~D~v~~yfSGHG 92 (321)
.-.+.+++.+.+.+|.++++|.+ +.. +...+..++..+.....++|.|++.-..|.
T Consensus 42 ~~~~~~r~~la~~~g~~~~~i~~-t~~-------~t~a~~~al~~~~~~~~~~~~vv~~~~~~~ 97 (379)
T TIGR03402 42 KAVEEAREQVAKLLGAEPDEIIF-TSG-------GTESDNTAIKSALAAQPEKRHIITTAVEHP 97 (379)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEE-eCc-------HHHHHHHHHHHHHHhcCCCCeEEEcccccH
Confidence 34556667777778887776654 432 345555556554433345688887666664
No 72
>KOG4044 consensus Mitochondrial associated endoribonuclease MAR1 (isochorismatase superfamily) [General function prediction only]
Probab=22.28 E-value=81 Score=27.03 Aligned_cols=23 Identities=30% Similarity=0.514 Sum_probs=17.0
Q ss_pred HhCCCCCeEEEEEeCCCCCcccc
Q 020767 129 NRLPKGASFTVFSDSCHSGGLID 151 (321)
Q Consensus 129 ~~l~~~~~v~~ilD~C~SG~~~~ 151 (321)
+-+..+.+|.++.|||-|-...+
T Consensus 123 dLl~rgl~VhvVaDacSSRs~~D 145 (201)
T KOG4044|consen 123 DLLERGLNVHVVADACSSRSNQD 145 (201)
T ss_pred HHHhCCceEEEEeehhccccchh
Confidence 33446889999999998876543
No 73
>cd06259 YdcF-like YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.
Probab=22.08 E-value=2.8e+02 Score=22.32 Aligned_cols=45 Identities=18% Similarity=0.205 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHhcCCCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHh
Q 020767 27 CINDVLAMRDVIINRFGFDPNHIELLTDAPGSSVMPTGANIKAALDRMVSK 77 (321)
Q Consensus 27 ~~~Da~~~~~~L~~~~gf~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~ 77 (321)
....+..|+++|.+ .|++++.|.+-.... -|.+|+......+.+.
T Consensus 49 ~~~ea~~m~~~l~~-~gv~~~~I~~e~~s~-----~T~ena~~~~~~~~~~ 93 (150)
T cd06259 49 GYSEAEAMARYLIE-LGVPAEAILLEDRST-----NTYENARFSAELLRER 93 (150)
T ss_pred CCCHHHHHHHHHHH-cCCCHHHeeecCCCC-----CHHHHHHHHHHHHHhc
Confidence 45688899999986 688877665544332 3899999888877654
No 74
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=22.02 E-value=1.7e+02 Score=27.30 Aligned_cols=30 Identities=17% Similarity=0.211 Sum_probs=16.3
Q ss_pred CCcEEEEEEeecCCCCCCCCcchHHHHHHHHHHHHH
Q 020767 5 GSKRIAVLVGCNYPNTKNELHGCINDVLAMRDVIIN 40 (321)
Q Consensus 5 ~~~~~Al~IGi~y~~~~~~L~~~~~Da~~~~~~L~~ 40 (321)
.+..+.-||++- --||.-||-.-|+..|.+
T Consensus 31 ~gs~~gTVv~~h------GsPGSH~DFkYi~~~l~~ 60 (297)
T PF06342_consen 31 SGSPLGTVVAFH------GSPGSHNDFKYIRPPLDE 60 (297)
T ss_pred CCCCceeEEEec------CCCCCccchhhhhhHHHH
Confidence 333444555552 223556666667777765
No 75
>PRK08361 aspartate aminotransferase; Provisional
Probab=21.77 E-value=5e+02 Score=24.63 Aligned_cols=50 Identities=14% Similarity=0.222 Sum_probs=27.6
Q ss_pred HHHHHHHHhcC--CCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCC
Q 020767 33 AMRDVIINRFG--FDPNHIELLTDAPGSSVMPTGANIKAALDRMVSKAEAGDVLLFHYSGHGT 93 (321)
Q Consensus 33 ~~~~~L~~~~g--f~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~ 93 (321)
.+++++...+| +++++|.+..+ +.+.|...+..+ +++||.|++---+|..
T Consensus 78 ~ia~~~~~~~g~~~~~~~i~~t~G--------~~~al~~~~~~l---~~~g~~Vlv~~p~y~~ 129 (391)
T PRK08361 78 AIAEYYKKFYGVDVDVDNVIVTAG--------AYEATYLAFESL---LEEGDEVIIPDPAFVC 129 (391)
T ss_pred HHHHHHHHHhCCCCCcccEEEeCC--------hHHHHHHHHHHh---cCCCCEEEEcCCCCcc
Confidence 45555544344 56677764433 334454455444 4689988875545443
No 76
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=21.68 E-value=4.6e+02 Score=23.29 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=47.6
Q ss_pred CCcEEEEEEeecCCCCC------CC---Ccc--hHHHHHHHHHHHHHhcCCCCCcEEEeeCCCCCCCCCcHHHHHHHHHH
Q 020767 5 GSKRIAVLVGCNYPNTK------NE---LHG--CINDVLAMRDVIINRFGFDPNHIELLTDAPGSSVMPTGANIKAALDR 73 (321)
Q Consensus 5 ~~~~~Al~IGi~y~~~~------~~---L~~--~~~Da~~~~~~L~~~~gf~~~~i~~L~d~~~~~~~~T~~~I~~~l~~ 73 (321)
+...++|.|-|+-.+.. +. ..| ...++..-.+.++ -+++ .|.++.|.. -|.+.++..|+-
T Consensus 95 Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~dpai~eqi~~~~--~~y~--kIfvilDsd-----Hs~~hvLAel~~ 165 (237)
T COG3510 95 GQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTDPAIAEQIRRLK--NEYP--KIFVILDSD-----HSMEHVLAELKL 165 (237)
T ss_pred CCCceEEEEecccCcCChhhhcCCCeEEEeCCCCCHHHHHHHHHHh--cCCC--cEEEEecCC-----chHHHHHHHHHH
Confidence 34567777777733211 11 122 2334444444444 3666 589988886 588999999998
Q ss_pred HHHhCCCCCEEEEE
Q 020767 74 MVSKAEAGDVLLFH 87 (321)
Q Consensus 74 l~~~~~~~D~v~~y 87 (321)
+..-+..||-++++
T Consensus 166 ~~pllsaG~Y~vVe 179 (237)
T COG3510 166 LAPLLSAGDYLVVE 179 (237)
T ss_pred hhhHhhcCceEEEe
Confidence 88878889988774
No 77
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=21.58 E-value=5.5e+02 Score=24.41 Aligned_cols=48 Identities=8% Similarity=0.165 Sum_probs=24.4
Q ss_pred HHHHHHHHHhcC--CCCCcEE-EeeCCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEE
Q 020767 32 LAMRDVIINRFG--FDPNHIE-LLTDAPGSSVMPTGANIKAALDRMVSKAEAGDVLLFH 87 (321)
Q Consensus 32 ~~~~~~L~~~~g--f~~~~i~-~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~D~v~~y 87 (321)
+++++++....+ +.+++|. +++.. +.+.|.-.+.- +..+++||.|++-
T Consensus 76 ~aia~~~~~~~~~~~~~~~i~v~iT~G-------a~~al~~~~~~-l~~~~pGd~Vlv~ 126 (396)
T PRK09257 76 QAVQELLFGADSPALAAGRVATVQTPG-------GTGALRVGADF-LKRAFPDAKVWVS 126 (396)
T ss_pred HHHHHHhcCCCCcccccCeEEEEecCC-------ccHHHHHHHHH-HHHhCCCCeEEEC
Confidence 455666654333 2466662 34433 23444444432 3334689988873
No 78
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=21.46 E-value=2.1e+02 Score=27.43 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcCCCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCC
Q 020767 31 VLAMRDVIINRFGFDPNHIELLTDAPGSSVMPTGANIKAALDRMVSKAEAGDVLLFHYSGH 91 (321)
Q Consensus 31 a~~~~~~L~~~~gf~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~D~v~~yfSGH 91 (321)
.+.+.+.|.+.+|. +++. ++++ ..+.+.-++..+ .+++||.|++-=-+|
T Consensus 33 ~~~~e~~la~~~g~--~~~v-~~~s-------gt~aL~~~l~al--~~~pGd~Viv~~~t~ 81 (376)
T TIGR02379 33 SRRCETWLENRTGT--KKAL-LTPS-------CTAALEMAALLL--DIQPGDEVIMPSYTF 81 (376)
T ss_pred HHHHHHHHHHHhCC--CeEE-EeCC-------HHHHHHHHHHHc--CCCCcCEEEECCCCc
Confidence 56777777766554 3453 4443 223333333332 467899888644444
No 79
>COG2160 AraA L-arabinose isomerase [Carbohydrate transport and metabolism]
Probab=21.45 E-value=3.1e+02 Score=27.03 Aligned_cols=79 Identities=11% Similarity=0.100 Sum_probs=51.8
Q ss_pred CCCCCCcEEEEEEeec-CCCCCCCCcchHHHHHHHHHHHHHhcCCCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHh-C
Q 020767 1 METKGSKRIAVLVGCN-YPNTKNELHGCINDVLAMRDVIINRFGFDPNHIELLTDAPGSSVMPTGANIKAALDRMVSK-A 78 (321)
Q Consensus 1 ~~~~~~~~~Al~IGi~-y~~~~~~L~~~~~Da~~~~~~L~~~~gf~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~-~ 78 (321)
|++....-.-++||-. ||+. +.|+.....+..+-+.|.+...+| +.+..-.- .-|.+.|.+..+++-.. .
T Consensus 1 M~~~k~~efwFviGsq~lyg~-e~le~v~~~a~~iV~~ln~~~~~P---~kiv~k~l----~tS~d~i~~~~~~an~~d~ 72 (497)
T COG2160 1 MTDFKLYEFWFVIGSQHLYGE-ETLEQVEQHAEGIVDQLNEEAKLP---YKIVLKPL----ITSPDEITAICREANYDDR 72 (497)
T ss_pred CccccceEEEEEecchhhcCH-HHHHHHHHHHHHHHHHhhhhcCCC---eEEEeccc----cCCHHHHHHHHHHhccCcc
Confidence 6777777788899996 6654 688899999999999998877776 23222221 13566777766654322 1
Q ss_pred CCCCEEEEE
Q 020767 79 EAGDVLLFH 87 (321)
Q Consensus 79 ~~~D~v~~y 87 (321)
-.|+++++|
T Consensus 73 cag~ItwmH 81 (497)
T COG2160 73 CAGVITWLH 81 (497)
T ss_pred ceeEEEEEE
Confidence 125566664
No 80
>PRK06108 aspartate aminotransferase; Provisional
Probab=21.41 E-value=5.5e+02 Score=24.00 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcC--CCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCC
Q 020767 32 LAMRDVIINRFG--FDPNHIELLTDAPGSSVMPTGANIKAALDRMVSKAEAGDVLLFHYSGH 91 (321)
Q Consensus 32 ~~~~~~L~~~~g--f~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~D~v~~yfSGH 91 (321)
+.++++|.+.+| +++++|.+ +.. +...+...+..+ .++||.|++---+|
T Consensus 68 ~~la~~~~~~~~~~~~~~~i~~-t~g-------~~~al~~~~~~l---~~~gd~vl~~~p~y 118 (382)
T PRK06108 68 EALARYVSRLHGVATPPERIAV-TSS-------GVQALMLAAQAL---VGPGDEVVAVTPLW 118 (382)
T ss_pred HHHHHHHHHHhCCCcCcceEEE-eCC-------hHHHHHHHHHHh---cCCCCEEEEeCCCc
Confidence 455666655557 66777754 332 234454444444 46889888754444
No 81
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=21.39 E-value=3e+02 Score=26.30 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=20.3
Q ss_pred HHHHHHHHHhCCCCCEEEEEeeCCCCccC
Q 020767 68 KAALDRMVSKAEAGDVLLFHYSGHGTRIP 96 (321)
Q Consensus 68 ~~~l~~l~~~~~~~D~v~~yfSGHG~~~~ 96 (321)
..++..+.++..+++.|++.++|||....
T Consensus 334 lAa~~~~~~~~~~~~~Vv~i~~g~G~k~~ 362 (365)
T cd06446 334 IAYAIKLAKKLGKEKVIVVNLSGRGDKDL 362 (365)
T ss_pred HHHHHHHHHhcCCCCeEEEEeCCCCcccc
Confidence 34444444555678899999999998754
No 82
>PRK07116 flavodoxin; Provisional
Probab=21.33 E-value=58 Score=27.10 Aligned_cols=14 Identities=29% Similarity=0.384 Sum_probs=11.7
Q ss_pred CEEEEEeeCCCCcc
Q 020767 82 DVLLFHYSGHGTRI 95 (321)
Q Consensus 82 D~v~~yfSGHG~~~ 95 (321)
.++++|||++|...
T Consensus 4 k~lIvY~S~tGnT~ 17 (160)
T PRK07116 4 KTLVAYFSATGTTK 17 (160)
T ss_pred cEEEEEECCCCcHH
Confidence 47999999999864
No 83
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=21.01 E-value=3.1e+02 Score=26.53 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhCCCCCEEEEEeeCCCCccC
Q 020767 65 ANIKAALDRMVSKAEAGDVLLFHYSGHGTRIP 96 (321)
Q Consensus 65 ~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~ 96 (321)
..-..++..+..+..+++.|++.++|||....
T Consensus 347 aaalaa~~~~~~~l~~~~~Vv~i~~g~G~~d~ 378 (385)
T TIGR00263 347 SHALAHLEKIAPTLPKDQIVVVNLSGRGDKDI 378 (385)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEeCCCCcCCH
Confidence 33334555566667789999999999998743
No 84
>PF06720 Phi-29_GP16_7: Bacteriophage phi-29 early protein GP16.7; InterPro: IPR009595 The early-expressed gene 16.7 is conserved in bacteriophage phi-29 and related phages. It encodes a membrane protein, GP16.7, consisting of an N-terminal transmembrane domain and a C-terminal DNA-binding and dimerisation domain. GP16.7 plays an important role in organising membrane-associated bacteriophage DNA replication [, ]. The C-terminal domain has a similar secondary structure similar to homeodomains, but forms a fundamentally different tertiary structure consisting of a six-helical dimeric fold []. Multimerisation of this dimer leads to efficient DNA binding.; PDB: 2C5R_B 2BNK_A 1ZAE_B.
Probab=20.82 E-value=33 Score=27.16 Aligned_cols=14 Identities=21% Similarity=0.477 Sum_probs=0.0
Q ss_pred EEEEEeeCCCCccC
Q 020767 83 VLLFHYSGHGTRIP 96 (321)
Q Consensus 83 ~v~~yfSGHG~~~~ 96 (321)
.++||||||-....
T Consensus 13 ~~if~~sg~n~~~~ 26 (130)
T PF06720_consen 13 CVIFLLSGRNNKKK 26 (130)
T ss_dssp --------------
T ss_pred HHHHHhcCcCccch
Confidence 47899999987654
No 85
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=20.63 E-value=3e+02 Score=27.60 Aligned_cols=43 Identities=16% Similarity=0.173 Sum_probs=25.3
Q ss_pred HHHHHHHHhc--CCCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEE
Q 020767 33 AMRDVIINRF--GFDPNHIELLTDAPGSSVMPTGANIKAALDRMVSKAEAGDVLLF 86 (321)
Q Consensus 33 ~~~~~L~~~~--gf~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~D~v~~ 86 (321)
++++++..+. ++++++|.+-.. +.+.|...+..+ +++||.|++
T Consensus 193 aia~~~~~~~~~~~~~~~I~it~G--------~~eal~~~~~~l---~~~Gd~Vli 237 (517)
T PRK13355 193 AIMQYAQLKGLPNVDVDDIYTGNG--------VSELINLSMSAL---LDDGDEVLI 237 (517)
T ss_pred HHHHHHHhcCCCCCChhHEEEeCc--------HHHHHHHHHHHh---CCCCCEEEE
Confidence 4445554333 466778754333 445565666555 468998887
No 86
>PRK05942 aspartate aminotransferase; Provisional
Probab=20.58 E-value=4.7e+02 Score=24.85 Aligned_cols=49 Identities=22% Similarity=0.304 Sum_probs=25.7
Q ss_pred HHHHHHHHhcC--CCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCC
Q 020767 33 AMRDVIINRFG--FDPNHIELLTDAPGSSVMPTGANIKAALDRMVSKAEAGDVLLFHYSGH 91 (321)
Q Consensus 33 ~~~~~L~~~~g--f~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~D~v~~yfSGH 91 (321)
++++++...+| +.+++..++++. +.+.|...+..+ +++||.|++---++
T Consensus 81 aia~~~~~~~~~~~~~~~~i~vt~G-------~~~al~~~~~~~---~~~gd~Vlv~~P~y 131 (394)
T PRK05942 81 AITDWYHRRYGVELDPDSEALPLLG-------SKEGLTHLALAY---VNPGDVVLVPSPAY 131 (394)
T ss_pred HHHHHHHHHHCCCcCCCCeEEEccC-------hHHHHHHHHHHh---CCCCCEEEEcCCCC
Confidence 45556654446 345543344443 334444444443 57899888744333
No 87
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=20.42 E-value=6.6e+02 Score=22.87 Aligned_cols=88 Identities=15% Similarity=0.089 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhcCCCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEEEeeCCCCccCCCCCCCCCCCCC
Q 020767 29 NDVLAMRDVIINRFGFDPNHIELLTDAPGSSVMPTGANIKAALDRMVSKAEAGDVLLFHYSGHGTRIPSLRPIWPFRQQD 108 (321)
Q Consensus 29 ~Da~~~~~~L~~~~gf~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~D~v~~yfSGHG~~~~~~~~g~~~~~~~ 108 (321)
.....+++.+.+.+| +.++.+..+ .| +.+...+..+ .++||.|++-=.+|....... .-....|..
T Consensus 32 ~~~~~l~~~~a~~~g--~~~~~~~~~-------gt-~a~~~~~~~l---~~~gd~v~~~~~~~~~~~~~~-~~~~~~g~~ 97 (338)
T cd06502 32 PTTAKLEARAAELFG--KEAALFVPS-------GT-AANQLALAAH---TQPGGSVICHETAHIYTDEAG-APEFLSGVK 97 (338)
T ss_pred HHHHHHHHHHHHHhC--CCeEEEecC-------ch-HHHHHHHHHh---cCCCCeEEEecCcceeeecCC-cHHHHcCce
Confidence 456778888877778 344544433 24 4565566554 468999998777776532210 000001223
Q ss_pred ceEEcCCCCCCcHHHHHHHHHh
Q 020767 109 EAIVPCDFNLITDLDFRQLVNR 130 (321)
Q Consensus 109 ~~l~p~D~~~i~~~~l~~ll~~ 130 (321)
...++.+...+..++|.+.+..
T Consensus 98 ~~~v~~~~~~~d~~~l~~~i~~ 119 (338)
T cd06502 98 LLPVPGENGKLTPEDLEAAIRP 119 (338)
T ss_pred EEeecCCCCcCCHHHHHHHhhc
Confidence 4455554433556667666653
No 88
>PRK05569 flavodoxin; Provisional
Probab=20.28 E-value=64 Score=25.91 Aligned_cols=14 Identities=21% Similarity=0.209 Sum_probs=11.7
Q ss_pred CEEEEEeeCCCCcc
Q 020767 82 DVLLFHYSGHGTRI 95 (321)
Q Consensus 82 D~v~~yfSGHG~~~ 95 (321)
.+++||||+||...
T Consensus 3 ki~iiY~S~tGnT~ 16 (141)
T PRK05569 3 KVSIIYWSCGGNVE 16 (141)
T ss_pred eEEEEEECCCCHHH
Confidence 47999999999863
No 89
>PTZ00377 alanine aminotransferase; Provisional
Probab=20.23 E-value=3.8e+02 Score=26.52 Aligned_cols=45 Identities=31% Similarity=0.433 Sum_probs=24.2
Q ss_pred HHHHHHHHHhcC--CCCCcEEEeeCCCCCCCCCcHHHHHHHHHHHHHhCCCCCEEEE
Q 020767 32 LAMRDVIINRFG--FDPNHIELLTDAPGSSVMPTGANIKAALDRMVSKAEAGDVLLF 86 (321)
Q Consensus 32 ~~~~~~L~~~~g--f~~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~~~~~~D~v~~ 86 (321)
+++++++....| +++++|.+ ++. +.+.|...+..++. ++||.|++
T Consensus 122 ~aia~~~~~~~g~~~~~~~I~i-t~G-------a~~al~~~~~~l~~--~~gD~Vlv 168 (481)
T PTZ00377 122 KAVAAFIERRDGVPKDPSDIFL-TDG-------ASSGIKLLLQLLIG--DPSDGVMI 168 (481)
T ss_pred HHHHHHHHHhcCCCCChhhEEE-cCC-------HHHHHHHHHHHhcc--CCCCEEEE
Confidence 345555554445 44566643 332 34555555554432 48898887
No 90
>PRK07681 aspartate aminotransferase; Provisional
Probab=20.13 E-value=4e+02 Score=25.37 Aligned_cols=30 Identities=10% Similarity=0.026 Sum_probs=19.5
Q ss_pred CcHHHHHHHHHhCCCCCeEEEEEeCCCCCcc
Q 020767 119 ITDLDFRQLVNRLPKGASFTVFSDSCHSGGL 149 (321)
Q Consensus 119 i~~~~l~~ll~~l~~~~~v~~ilD~C~SG~~ 149 (321)
++.+++.++++-.. ..++++|.|-+|+.-.
T Consensus 183 ~s~~~~~~i~~~a~-~~~~~iI~De~y~~~~ 212 (399)
T PRK07681 183 AHEDFFKEVIAFAK-KHNIIVVHDFAYAEFY 212 (399)
T ss_pred CCHHHHHHHHHHHH-HcCeEEEEeccchhhe
Confidence 56667777665443 2357888888887543
No 91
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=20.12 E-value=1.7e+02 Score=26.81 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=7.8
Q ss_pred cHHHHHHHHHHHHHhC
Q 020767 63 TGANIKAALDRMVSKA 78 (321)
Q Consensus 63 T~~~I~~~l~~l~~~~ 78 (321)
+.+.|+.+.++|.++-
T Consensus 111 ~y~Di~avye~Lr~~~ 126 (258)
T KOG1552|consen 111 LYADIKAVYEWLRNRY 126 (258)
T ss_pred chhhHHHHHHHHHhhc
Confidence 3445555555555443
No 92
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=20.09 E-value=1.4e+02 Score=24.16 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCcEEEeeCCCCCCCCCcHHH--HHHHHHHHHHhCCCCCEEEEEee
Q 020767 28 INDVLAMRDVIINRFGFDPNHIELLTDAPGSSVMPTGAN--IKAALDRMVSKAEAGDVLLFHYS 89 (321)
Q Consensus 28 ~~Da~~~~~~L~~~~gf~~~~i~~L~d~~~~~~~~T~~~--I~~~l~~l~~~~~~~D~v~~yfS 89 (321)
.+=+.++++.|++.+|++. ..|-- ...+ =.....|+..+++..|.|++-.|
T Consensus 15 ~~~V~~la~~L~~~~g~~V-----~lD~~------~~~~i~~~g~~~W~~~~~~~ad~Vliv~S 67 (150)
T PF08357_consen 15 KEWVLALAEFLRQNCGIDV-----ILDQW------ELNEIARQGPPRWMERQIREADKVLIVCS 67 (150)
T ss_pred HHHHHHHHHHHHhccCCce-----eecHH------hhcccccCCHHHHHHHHHhcCCEEEEEec
Confidence 4557789999998668872 33421 1112 22466788888888999999998
No 93
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=20.06 E-value=3.5e+02 Score=25.69 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhcCCC-CCcEEEeeCCCCCCCCCcHHHHHHHHHHHHH-hCCCCCEEEEEeeCCCC
Q 020767 31 VLAMRDVIINRFGFD-PNHIELLTDAPGSSVMPTGANIKAALDRMVS-KAEAGDVLLFHYSGHGT 93 (321)
Q Consensus 31 a~~~~~~L~~~~gf~-~~~i~~L~d~~~~~~~~T~~~I~~~l~~l~~-~~~~~D~v~~yfSGHG~ 93 (321)
...+++.+.+.+|.+ +++|. ++.. +.+.+...+..+.. ..++||.|++.-..|..
T Consensus 64 ~~~~r~~ia~~~~~~~~~~v~-~~~g-------~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s 120 (403)
T TIGR01979 64 YEAVREKVAKFINAASDEEIV-FTRG-------TTESINLVAYSWGDSNLKAGDEIVISEMEHHA 120 (403)
T ss_pred HHHHHHHHHHHhCcCCCCeEE-EeCC-------HHHHHHHHHHHhhhhcCCCCCEEEECcchhhH
Confidence 445566666677876 45654 4432 34455555555432 35789999987777664
Done!