Query 020769
Match_columns 321
No_of_seqs 218 out of 732
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 05:00:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020769.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020769hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0396 Uncharacterized conser 100.0 3.2E-68 7E-73 495.5 28.8 285 37-321 1-293 (389)
2 KOG2817 Predicted E3 ubiquitin 100.0 1.2E-35 2.7E-40 280.4 23.9 177 144-320 117-298 (394)
3 PF10607 CLTH: CTLH/CRA C-term 100.0 1.8E-34 4E-39 244.3 13.3 141 181-321 2-144 (145)
4 KOG2659 LisH motif-containing 99.9 1E-26 2.2E-31 207.5 16.5 174 143-317 26-203 (228)
5 smart00757 CRA CT11-RanBPM. pr 99.7 4.6E-18 9.9E-23 134.6 7.1 87 234-320 2-92 (99)
6 COG5109 Uncharacterized conser 99.5 2E-12 4.3E-17 119.4 18.1 173 144-319 101-299 (396)
7 smart00668 CTLH C-terminal to 99.4 7.5E-13 1.6E-17 94.5 5.5 55 181-235 2-56 (58)
8 smart00667 LisH Lissencephaly 97.9 3E-05 6.5E-10 48.5 4.6 32 142-173 2-33 (34)
9 PF08513 LisH: LisH; InterPro 97.8 4E-05 8.7E-10 46.4 4.1 27 144-170 1-27 (27)
10 KOG0293 WD40 repeat-containing 97.5 0.0016 3.5E-08 63.3 11.9 120 143-269 17-137 (519)
11 KOG1477 SPRY domain-containing 95.4 0.0069 1.5E-07 60.9 1.5 164 148-312 254-441 (469)
12 PF04494 TFIID_90kDa: WD40 ass 89.9 1.1 2.3E-05 37.8 6.5 48 215-262 38-85 (142)
13 KOG1333 Uncharacterized conser 86.7 14 0.0003 33.2 11.4 141 144-287 6-154 (241)
14 cd08044 TAF5_NTD2 TAF5_NTD2 is 86.7 1.5 3.3E-05 36.5 5.3 64 201-264 13-76 (133)
15 PF04136 Sec34: Sec34-like fam 81.3 34 0.00073 29.3 13.0 74 148-231 66-139 (157)
16 PF03962 Mnd1: Mnd1 family; I 80.6 32 0.00068 30.5 11.4 121 49-177 58-187 (188)
17 PF10607 CLTH: CTLH/CRA C-term 79.6 14 0.00029 30.6 8.4 58 149-207 7-67 (145)
18 KOG0275 Conserved WD40 repeat- 73.2 39 0.00085 32.7 10.2 139 144-294 8-151 (508)
19 PHA01750 hypothetical protein 67.5 36 0.00077 25.0 6.7 49 52-111 25-74 (75)
20 PF07889 DUF1664: Protein of u 65.6 43 0.00093 27.8 7.8 29 55-83 37-65 (126)
21 PF01601 Corona_S2: Coronaviru 65.1 51 0.0011 34.3 9.8 113 48-168 239-356 (610)
22 PF09398 FOP_dimer: FOP N term 63.6 15 0.00032 28.1 4.4 32 144-175 19-50 (81)
23 PF06248 Zw10: Centromere/kine 58.7 1.8E+02 0.0039 30.2 12.9 33 182-214 110-142 (593)
24 PF06160 EzrA: Septation ring 58.0 1.9E+02 0.0042 29.9 12.9 163 58-228 105-305 (560)
25 PF14712 Snapin_Pallidin: Snap 57.1 84 0.0018 23.9 8.4 77 48-131 12-91 (92)
26 PF13805 Pil1: Eisosome compon 56.8 1E+02 0.0022 29.0 9.6 81 46-126 53-136 (271)
27 PF14559 TPR_19: Tetratricopep 56.7 62 0.0013 22.3 6.6 64 191-261 2-65 (68)
28 COG1322 Predicted nuclease of 56.0 99 0.0022 31.2 10.0 71 90-160 128-215 (448)
29 PF14769 CLAMP: Flagellar C1a 55.4 50 0.0011 25.9 6.4 26 276-301 61-86 (101)
30 PF10154 DUF2362: Uncharacteri 54.2 52 0.0011 33.7 7.7 81 32-114 101-181 (510)
31 smart00030 CLb CLUSTERIN Beta 53.2 1.5E+02 0.0032 26.7 9.4 56 50-109 4-59 (206)
32 PF04100 Vps53_N: Vps53-like, 52.8 2.4E+02 0.0051 27.8 16.0 59 55-113 26-84 (383)
33 PF11221 Med21: Subunit 21 of 52.7 1.4E+02 0.003 25.1 10.1 76 56-131 64-142 (144)
34 PF12126 DUF3583: Protein of u 50.9 2.3E+02 0.005 27.0 15.3 113 89-234 38-155 (324)
35 KOG2659 LisH motif-containing 48.4 66 0.0014 29.5 6.7 65 147-211 67-134 (228)
36 PF13838 Clathrin_H_link: Clat 46.1 28 0.0006 25.6 3.2 25 220-244 7-31 (66)
37 PF13934 ELYS: Nuclear pore co 45.6 2.3E+02 0.005 25.6 10.7 91 144-248 78-169 (226)
38 PF03938 OmpH: Outer membrane 45.4 1.8E+02 0.0039 24.2 12.1 70 40-109 26-96 (158)
39 PF12895 Apc3: Anaphase-promot 44.3 1.2E+02 0.0027 22.0 7.2 49 190-244 35-83 (84)
40 PF07035 Mic1: Colon cancer-as 44.2 1.6E+02 0.0034 25.7 8.2 83 144-245 29-115 (167)
41 PF09755 DUF2046: Uncharacteri 43.9 1.9E+02 0.0041 27.8 9.2 86 46-131 23-119 (310)
42 COG5109 Uncharacterized conser 43.5 89 0.0019 30.1 6.9 67 143-210 111-186 (396)
43 smart00806 AIP3 Actin interact 43.3 3.6E+02 0.0077 27.1 11.7 107 44-150 156-292 (426)
44 cd05804 StaR_like StaR_like; a 42.6 2.6E+02 0.0057 26.0 10.4 96 147-246 117-213 (355)
45 PF05205 COMPASS-Shg1: COMPASS 42.6 1.4E+02 0.0031 23.7 7.2 65 102-167 13-80 (106)
46 smart00668 CTLH C-terminal to 42.2 35 0.00075 23.2 3.2 29 222-250 4-32 (58)
47 PF12569 NARP1: NMDA receptor- 40.7 2.4E+02 0.0052 29.1 10.2 91 143-233 261-365 (517)
48 PF10602 RPN7: 26S proteasome 39.8 2.5E+02 0.0054 24.3 15.9 106 144-250 36-144 (177)
49 PF01383 CpcD: CpcD/allophycoc 38.7 20 0.00044 25.3 1.5 23 41-64 23-45 (56)
50 PF13934 ELYS: Nuclear pore co 38.6 3E+02 0.0065 24.9 10.0 91 161-268 64-155 (226)
51 KOG0263 Transcription initiati 38.3 82 0.0018 33.5 6.4 32 141-172 19-50 (707)
52 KOG3060 Uncharacterized conser 37.1 2.3E+02 0.0049 26.7 8.4 126 145-310 53-193 (289)
53 PF00627 UBA: UBA/TS-N domain; 36.2 52 0.0011 20.7 3.1 18 186-203 18-37 (37)
54 PRK15179 Vi polysaccharide bio 36.2 3.9E+02 0.0084 28.6 11.2 98 144-249 86-184 (694)
55 PF03882 KicB: KicB killing fa 36.0 4.6E+02 0.0099 26.2 11.9 107 47-153 159-278 (440)
56 KOG1854 Mitochondrial inner me 35.9 3.7E+02 0.008 28.4 10.5 60 64-123 289-348 (657)
57 PRK11788 tetratricopeptide rep 35.9 3.8E+02 0.0082 25.2 11.6 21 148-168 111-131 (389)
58 PF05120 GvpG: Gas vesicle pro 35.8 2E+02 0.0042 21.9 7.2 59 50-108 7-71 (79)
59 TIGR02552 LcrH_SycD type III s 35.3 2.2E+02 0.0047 22.3 8.8 55 149-206 56-111 (135)
60 PF04840 Vps16_C: Vps16, C-ter 31.8 4.7E+02 0.01 25.0 18.1 83 145-244 179-262 (319)
61 PRK10780 periplasmic chaperone 31.6 3.3E+02 0.0071 23.2 10.1 70 41-110 34-104 (165)
62 PF12998 ING: Inhibitor of gro 31.5 2.4E+02 0.0052 21.6 10.4 30 49-80 12-41 (105)
63 PF14691 Fer4_20: Dihydroprymi 31.3 60 0.0013 26.1 3.4 27 220-246 39-65 (111)
64 cd00632 Prefoldin_beta Prefold 30.7 1.9E+02 0.0041 22.7 6.2 44 38-81 47-90 (105)
65 PRK10361 DNA recombination pro 30.6 3.9E+02 0.0084 27.3 9.6 77 91-167 138-232 (475)
66 PF10827 DUF2552: Protein of u 30.4 31 0.00066 25.7 1.3 17 195-211 60-76 (79)
67 PF01399 PCI: PCI domain; Int 30.3 2.1E+02 0.0047 21.3 6.4 28 184-211 3-30 (105)
68 PF02609 Exonuc_VII_S: Exonucl 29.9 1.1E+02 0.0024 21.0 4.1 12 118-129 34-45 (53)
69 TIGR01837 PHA_granule_1 poly(h 29.7 3E+02 0.0066 22.3 10.3 34 70-103 21-54 (118)
70 PF09763 Sec3_C: Exocyst compl 29.6 7E+02 0.015 26.4 12.5 207 95-301 440-694 (701)
71 PF13371 TPR_9: Tetratricopept 29.4 1.8E+02 0.0038 20.2 5.4 52 191-247 6-57 (73)
72 KOG4594 Sequence-specific sing 29.1 62 0.0013 30.7 3.4 31 141-171 15-45 (354)
73 PF07729 FCD: FCD domain; Int 28.8 94 0.002 23.7 4.1 29 179-207 95-123 (125)
74 COG3937 Uncharacterized conser 28.2 2.8E+02 0.0061 22.4 6.5 39 73-111 26-64 (108)
75 PF09943 DUF2175: Uncharacteri 28.1 96 0.0021 24.7 3.9 33 47-79 67-100 (101)
76 PF07926 TPR_MLP1_2: TPR/MLP1/ 27.3 3.5E+02 0.0075 22.2 8.6 80 52-131 33-118 (132)
77 PF06160 EzrA: Septation ring 26.9 7.2E+02 0.016 25.7 18.1 79 49-131 371-457 (560)
78 PLN03088 SGT1, suppressor of 26.9 5.2E+02 0.011 24.8 9.7 89 151-247 9-98 (356)
79 KOG2148 Exocyst protein Sec3 [ 26.7 8.2E+02 0.018 26.3 14.4 30 178-207 308-337 (867)
80 PF07139 DUF1387: Protein of u 26.6 5.7E+02 0.012 24.4 10.3 43 89-131 214-256 (302)
81 PF07303 Occludin_ELL: Occludi 26.4 3.3E+02 0.0071 21.5 7.0 66 64-131 25-93 (101)
82 PF01920 Prefoldin_2: Prefoldi 26.4 2E+02 0.0043 22.0 5.6 42 39-80 47-88 (106)
83 KOG3647 Predicted coiled-coil 26.1 4.5E+02 0.0098 24.9 8.4 68 92-159 111-190 (338)
84 KOG3091 Nuclear pore complex, 26.1 4.8E+02 0.01 26.7 9.2 12 49-60 333-344 (508)
85 PRK11186 carboxy-terminal prot 25.8 7.6E+02 0.016 26.4 11.2 68 143-210 39-121 (667)
86 PF09976 TPR_21: Tetratricopep 25.6 3.6E+02 0.0079 21.8 11.3 92 147-244 51-143 (145)
87 PF14282 FlxA: FlxA-like prote 25.6 3.4E+02 0.0074 21.5 7.7 50 64-113 22-71 (106)
88 smart00806 AIP3 Actin interact 25.5 5.2E+02 0.011 26.0 9.3 64 58-128 152-216 (426)
89 PF01726 LexA_DNA_bind: LexA D 25.5 1.3E+02 0.0027 21.8 3.9 32 143-174 8-39 (65)
90 PF03915 AIP3: Actin interacti 25.3 2.3E+02 0.0049 28.5 6.9 39 44-82 152-190 (424)
91 cd00189 TPR Tetratricopeptide 25.3 2.2E+02 0.0047 19.1 8.7 88 150-245 6-94 (100)
92 COG3883 Uncharacterized protei 25.2 5.7E+02 0.012 24.0 9.3 47 61-111 45-91 (265)
93 PF00804 Syntaxin: Syntaxin; 24.9 2.1E+02 0.0045 21.4 5.4 17 115-131 53-69 (103)
94 PF10834 DUF2560: Protein of u 24.8 1.2E+02 0.0026 23.0 3.7 43 197-248 29-75 (80)
95 cd00194 UBA Ubiquitin Associat 24.7 1E+02 0.0022 19.1 2.9 19 186-204 17-37 (38)
96 PHA00780 hypothetical protein 24.6 1.2E+02 0.0025 23.0 3.5 41 197-246 29-73 (80)
97 PF12931 Sec16_C: Sec23-bindin 24.5 68 0.0015 30.0 3.0 24 186-209 1-24 (284)
98 PF13432 TPR_16: Tetratricopep 24.5 2.3E+02 0.005 19.2 6.8 55 150-206 3-57 (65)
99 PF08569 Mo25: Mo25-like; Int 24.2 6.6E+02 0.014 24.3 9.9 112 86-210 10-126 (335)
100 PF14276 DUF4363: Domain of un 24.1 1.6E+02 0.0036 23.5 4.8 49 180-228 28-76 (121)
101 PF12569 NARP1: NMDA receptor- 24.0 6.2E+02 0.013 26.1 9.9 95 146-248 196-291 (517)
102 PF14966 DNA_repr_REX1B: DNA r 23.4 2E+02 0.0043 22.6 4.9 47 58-106 37-83 (97)
103 PF05508 Ran-binding: RanGTP-b 22.8 6.3E+02 0.014 24.2 9.0 65 49-114 38-105 (302)
104 PF04840 Vps16_C: Vps16, C-ter 22.8 6.7E+02 0.015 23.9 10.3 82 142-244 206-287 (319)
105 KOG1318 Helix loop helix trans 22.8 7.8E+02 0.017 24.6 12.4 39 44-82 218-257 (411)
106 KOG2662 Magnesium transporters 22.3 4.8E+02 0.01 26.1 8.3 31 93-123 227-257 (414)
107 PF04053 Coatomer_WDAD: Coatom 22.0 2.8E+02 0.0061 27.9 6.9 74 147-243 298-371 (443)
108 PF06148 COG2: COG (conserved 21.9 70 0.0015 26.2 2.2 30 46-75 22-51 (133)
109 smart00165 UBA Ubiquitin assoc 21.8 1.2E+02 0.0026 18.7 2.9 18 186-203 17-36 (37)
110 PRK05260 condesin subunit F; P 21.5 8.4E+02 0.018 24.5 11.9 120 46-165 158-290 (440)
111 PF09748 Med10: Transcription 21.5 4.6E+02 0.01 21.5 7.1 101 67-169 2-109 (128)
112 cd07651 F-BAR_PombeCdc15_like 21.4 6E+02 0.013 22.8 9.8 22 61-82 104-125 (236)
113 PF04799 Fzo_mitofusin: fzo-li 21.4 5.6E+02 0.012 22.4 8.2 26 52-77 111-136 (171)
114 KOG4603 TBP-1 interacting prot 21.4 5.7E+02 0.012 22.5 12.0 34 139-173 166-200 (201)
115 PLN02372 violaxanthin de-epoxi 21.3 8.1E+02 0.018 24.6 9.6 74 52-128 363-442 (455)
116 PRK14064 exodeoxyribonuclease 21.1 1.3E+02 0.0028 22.6 3.3 9 119-127 42-50 (75)
117 PTZ00196 60S ribosomal protein 20.8 2E+02 0.0042 22.9 4.3 40 222-261 51-92 (98)
118 TIGR03362 VI_chp_7 type VI sec 20.5 7.4E+02 0.016 23.5 10.9 26 144-169 133-158 (301)
119 PF04522 DUF585: Protein of un 20.5 1.3E+02 0.0028 27.5 3.7 38 273-310 68-105 (248)
120 PF05531 NPV_P10: Nucleopolyhe 20.5 3.8E+02 0.0083 20.2 7.4 53 58-111 8-60 (75)
121 KOG1621 1D-myo-inositol-tripho 20.4 2E+02 0.0043 28.4 5.1 59 35-113 327-385 (458)
122 KOG1538 Uncharacterized conser 20.4 1.1E+03 0.024 25.5 14.0 67 178-244 767-842 (1081)
123 KOG3230 Vacuolar assembly/sort 20.1 6.4E+02 0.014 22.7 9.3 26 49-74 8-36 (224)
124 smart00299 CLH Clathrin heavy 20.1 2.1E+02 0.0046 23.0 4.8 46 150-205 75-121 (140)
125 PRK10564 maltose regulon perip 20.0 1.5E+02 0.0032 28.4 4.2 23 185-207 262-284 (303)
No 1
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=3.2e-68 Score=495.52 Aligned_cols=285 Identities=40% Similarity=0.694 Sum_probs=275.0
Q ss_pred chhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----CCCChHHHHHHHHHHHHHHHHHHHHHHhh
Q 020769 37 LTEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDS----ENFSKDDAVNHLTSLVSRLQGLKRKLEEG 112 (321)
Q Consensus 37 ~~~~l~le~~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~----~~~~~~~~~~~ld~li~kl~~lk~kl~~~ 112 (321)
++||+.+||++||||||.++|+||+.||.|+||++.|...++++.+. .....+.+++.+|.||.+|+.+||++++.
T Consensus 1 ~~~~l~l~y~l~ripye~l~kr~r~~qk~i~re~~~v~~~~~~l~~~~~sn~~~~~d~~~~~id~Li~kv~~~krk~e~~ 80 (389)
T KOG0396|consen 1 MTFHLKLEYQLFRIPYELLNKRIRHNQKVIDRETSHVLMVVAELQETLISNIVPHLDSTVSLIDRLIRKVQCLKRKLEEY 80 (389)
T ss_pred CcchhhhhchhhcCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999773 23458899999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhcc---ccCc-chhhhhcHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCcccHHHHHHHHHHH
Q 020769 113 SRTEHLQAQKCRARLNHLE---SADA-ENLAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVI 188 (321)
Q Consensus 113 ~~~e~~~~~~~~~Rl~~L~---~~~~-~~~~~w~~~~l~rlI~dyLlR~G~~~tA~~l~~e~~i~~~~d~e~f~~~~~I~ 188 (321)
++.|.+.+++|++|++|+. +.+. .+...|++.++||+|+|||+|+||+++|..|+++++|++++|+|+|.+++.|+
T Consensus 81 iq~e~~~~~~iksRid~m~e~~~~d~~~~~~~w~r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~ 160 (389)
T KOG0396|consen 81 IQSEEEQLKRIKSRIDFMHEEISSDTPANSRKWPRNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIR 160 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCchHHHHhHHHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHH
Confidence 9999999999999999999 3444 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHhHhhccC
Q 020769 189 DALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKS 268 (321)
Q Consensus 189 ~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~~eAi~yark~l~~~~~~~~~ei~~~m~lLaf~~ 268 (321)
++|+.|++.|||.||++|+-.|+|.+|.|||++|+|+|||||+.+++.+||+|+|+||.||+.+++++++.+||+|||++
T Consensus 161 ~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~ 240 (389)
T KOG0396|consen 161 DSLLAGELEPALSWCKEHKVELKKEESSLEFQLRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPK 240 (389)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchhhhcChhcHHHHHHHHHHHHHHHhCCCCCcchHHHHHhcccccCCC
Q 020769 269 NTECTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTP 321 (321)
Q Consensus 269 ~~~~~~y~~L~~~~rw~~L~~~F~~~~~~l~gl~~~s~L~~~l~aGlsaLkTp 321 (321)
.+.+++|..+++++||+.|+++|.++++++||+|.+|+|.+.+++|+||+|||
T Consensus 241 ~t~~sky~~l~~~~rw~~l~~lF~s~a~~l~~i~~~~~L~~~l~~GLsalKTp 293 (389)
T KOG0396|consen 241 YTSSSKYLNLLTADRWSVLADLFLSEALKLFGIPINPALTIYLQAGLSALKTP 293 (389)
T ss_pred ccCcccccCcccHHHHHHHHHHhhHHHHHHhCCCCCcHHHHHHHhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999998
No 2
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-35 Score=280.38 Aligned_cols=177 Identities=30% Similarity=0.603 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHhCCCCc--ccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHh
Q 020769 144 TRVKRILVDYMLRMSYYETAEKLAESSNIQDL--VDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQL 221 (321)
Q Consensus 144 ~~l~rlI~dyLlR~G~~~tA~~l~~e~~i~~~--~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~L 221 (321)
..||.+|+.||+|+|+.|+|+.|++|+|+... .-...|.++++|.++|+.||+.+||+||..|+.+|...+|.|||.|
T Consensus 117 ~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~s~LE~~L 196 (394)
T KOG2817|consen 117 QVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKSSSLEFKL 196 (394)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccccccHHHHH
Confidence 45799999999999999999999999999743 3467899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCChH--HHHHHHHHhccchhhhcHHHHHHHHhHhhccCC-CCCCchhhhcChhcHHHHHHHHHHHHHHH
Q 020769 222 RLQEFIELVRGENNL--RAITYARKYLAPWGATHMKELQRVMATLAFKSN-TECTTYKALFEPKQWDFLVDQFKQEFCKL 298 (321)
Q Consensus 222 r~q~fIELir~~~~~--eAi~yark~l~~~~~~~~~ei~~~m~lLaf~~~-~~~~~y~~L~~~~rw~~L~~~F~~~~~~l 298 (321)
|.++|+++++.|+-. +||.|||+|++||+..+..|||++|++|.|... .+.+||.+++++..|..++..|.++||++
T Consensus 197 h~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl~~l~~gl~~spy~~~ls~~~w~~~~~~f~r~ycal 276 (394)
T KOG2817|consen 197 HSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSLLYLRNGLEKSPYSEILSPKLWKELTEEFTREYCAL 276 (394)
T ss_pred HHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCCCCCChHHHhCHHHHHHHHHHHHHHHHHH
Confidence 999999999999655 999999999999999999999999999999876 57799999999999999999999999999
Q ss_pred hCCCCCcchHHHHHhcccccCC
Q 020769 299 YGMTLEPLLNIYLQAGLSALNT 320 (321)
Q Consensus 299 ~gl~~~s~L~~~l~aGlsaLkT 320 (321)
+|+|.+|||.+.+.||++||+.
T Consensus 277 lg~s~eSPL~v~v~aG~~Alp~ 298 (394)
T KOG2817|consen 277 LGISVESPLSVLVNAGCIALPQ 298 (394)
T ss_pred cCCCccCcHHHHHHhhHHHHHH
Confidence 9999999999999999999863
No 3
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=100.00 E-value=1.8e-34 Score=244.28 Aligned_cols=141 Identities=40% Similarity=0.682 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHH
Q 020769 181 FQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRV 260 (321)
Q Consensus 181 f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~~eAi~yark~l~~~~~~~~~ei~~~ 260 (321)
|.++++|+++|++||+++|++||++|+|.|.+.++.|+|.|++|+|||||+.|++.+||+|+|+++.|+...+.++++++
T Consensus 2 ~~~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~ 81 (145)
T PF10607_consen 2 FKERKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKL 81 (145)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999988877789999999
Q ss_pred HhHhhccCCCC--CCchhhhcChhcHHHHHHHHHHHHHHHhCCCCCcchHHHHHhcccccCCC
Q 020769 261 MATLAFKSNTE--CTTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALNTP 321 (321)
Q Consensus 261 m~lLaf~~~~~--~~~y~~L~~~~rw~~L~~~F~~~~~~l~gl~~~s~L~~~l~aGlsaLkTp 321 (321)
|++|+|.++.+ ++||++++++++|+.|++.|++++|+.+|+|.+|||++++++|++++||.
T Consensus 82 ~~lL~~~~~~~~~~s~~~~l~~~~~~~~la~~~~~~~l~~~~~~~~s~L~~~~~~g~~~l~~l 144 (145)
T PF10607_consen 82 MSLLAYPDPEEPLPSPYKELLSPERREELAEEFNSAILKSYGLPKESPLEVILKAGLSALKTL 144 (145)
T ss_pred HHHHHcCCcccccchHHHHHhChHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhc
Confidence 99999999876 68999999999999999999999999999999999999999999999984
No 4
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.95 E-value=1e-26 Score=207.53 Aligned_cols=174 Identities=22% Similarity=0.367 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHhCCCC-cccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHh
Q 020769 143 NTRVKRILVDYMLRMSYYETAEKLAESSNIQD-LVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQL 221 (321)
Q Consensus 143 ~~~l~rlI~dyLlR~G~~~tA~~l~~e~~i~~-~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~L 221 (321)
+..+|+||++||+.+||.++|+.|++++|+.. .+|.+.+.++.+|+.+|+.|++..|++-+++..|.+.+.+..|.|.|
T Consensus 26 ~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~L 105 (228)
T KOG2659|consen 26 REDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHL 105 (228)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHH
Confidence 47899999999999999999999999999987 88999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhccchhhh---cHHHHHHHHhHhhccCCCCCCchhhhcChhcHHHHHHHHHHHHHHH
Q 020769 222 RLQEFIELVRGENNLRAITYARKYLAPWGAT---HMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKL 298 (321)
Q Consensus 222 r~q~fIELir~~~~~eAi~yark~l~~~~~~---~~~ei~~~m~lLaf~~~~~~~~y~~L~~~~rw~~L~~~F~~~~~~l 298 (321)
++|+||||||.|+..+||+|+|.+++|++.. ++.+++++|++|+|..+ +.+|+.+|++.++|.++|+.+++++++.
T Consensus 106 q~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~-~~sp~~~l~~~s~R~kvA~~vN~aiL~~ 184 (228)
T KOG2659|consen 106 QQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELS-QESPSAELLSQSLRQKVASEVNSAILAS 184 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCc-ccCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999976 46799999999999975 4599999999999999999999999999
Q ss_pred hCCCCCcchHHHHHhcccc
Q 020769 299 YGMTLEPLLNIYLQAGLSA 317 (321)
Q Consensus 299 ~gl~~~s~L~~~l~aGlsa 317 (321)
++.+..|.|...+..+..+
T Consensus 185 ~~~~~~~~l~~llk~~~~~ 203 (228)
T KOG2659|consen 185 QEHESEPKLPFLLKLISWA 203 (228)
T ss_pred hcccccchHHHHHHHHHHH
Confidence 9999999998888666544
No 5
>smart00757 CRA CT11-RanBPM. protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)
Probab=99.73 E-value=4.6e-18 Score=134.57 Aligned_cols=87 Identities=40% Similarity=0.630 Sum_probs=82.6
Q ss_pred ChHHHHHHHHHhccchhhhc---HHHHHHHHhHhhccCCCCCCchhhhcChhcHHHHHHHHHHHHHHHh-CCCCCcchHH
Q 020769 234 NNLRAITYARKYLAPWGATH---MKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQEFCKLY-GMTLEPLLNI 309 (321)
Q Consensus 234 ~~~eAi~yark~l~~~~~~~---~~ei~~~m~lLaf~~~~~~~~y~~L~~~~rw~~L~~~F~~~~~~l~-gl~~~s~L~~ 309 (321)
++.+||+|||+++++|..++ .++|+++||+|+|.++.+.+||+++++++||+.+++.|++++|..+ |++.+|+|++
T Consensus 2 ~~~eAi~yar~~l~~~~~~~~~~~~el~~~m~llaf~~~~~~sp~~~ll~~~~~~~la~~~n~~~l~~~~~~~~~s~L~~ 81 (99)
T smart00757 2 KIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAEELNSAILELLHGKSSESPLEI 81 (99)
T ss_pred cHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHhcCCCCCCccHHHHCCHHHHHHHHHHHHHHHHHHccCCCCCChHHH
Confidence 57899999999999999887 7899999999999987567999999999999999999999999999 9999999999
Q ss_pred HHHhcccccCC
Q 020769 310 YLQAGLSALNT 320 (321)
Q Consensus 310 ~l~aGlsaLkT 320 (321)
++++|+.++||
T Consensus 82 ~~~~~~~~~~~ 92 (99)
T smart00757 82 LLSAGLAALKT 92 (99)
T ss_pred HHHHHHHHHHH
Confidence 99999999987
No 6
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=99.49 E-value=2e-12 Score=119.38 Aligned_cols=173 Identities=16% Similarity=0.177 Sum_probs=140.1
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHhCCCCccc-HHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhh
Q 020769 144 TRVKRILVDYMLRMSYYETAEKLAESSNIQDLVD-IEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLR 222 (321)
Q Consensus 144 ~~l~rlI~dyLlR~G~~~tA~~l~~e~~i~~~~d-~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr 222 (321)
..++.+.-.++.++|-..-+-.++.+.|+++... .+.|.-++.|.+.|.+.++..-++|. +-...|.+.++.+|++|.
T Consensus 101 v~~~~~~~l~~~n~~dv~~~hi~~~~~g~~e~~~~~~~f~~lK~v~~gI~~k~~~l~iE~~-Qi~gyl~kgdtesel~l~ 179 (396)
T COG5109 101 VTYLVVYYLLENNCADVVERHISETKDGKDEIIKIRDGFVKLKKVISGISEKSTFLLIEFL-QIEGYLSKGDTESELELY 179 (396)
T ss_pred eeehHHHHHHHhhHHHHHHHHHHHhhcCccchhhHHHHHHHHHHHHHhhccchhHhHHHHH-HhcCccccCCchhhhHHH
Confidence 3456666677777777777888888999987665 58899999999999999999999999 777889888887777766
Q ss_pred HHHHH--HHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHhHhhccCCC-----------------------CCCchhh
Q 020769 223 LQEFI--ELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNT-----------------------ECTTYKA 277 (321)
Q Consensus 223 ~q~fI--ELir~~~~~eAi~yark~l~~~~~~~~~ei~~~m~lLaf~~~~-----------------------~~~~y~~ 277 (321)
.-... -++-. ++++|+.|.++.++.|..+|..+|+..|-.+.+-+.. ..-.|.+
T Consensus 180 ~~~~esl~l~hk-~~~~a~r~c~t~~a~f~~kh~~dv~~~~~~l~nap~dcfrhrekelmqnI~~~l~ksligqPiEdID 258 (396)
T COG5109 180 LVSHESLLLIHK-RYDEALRLCFTKLASFVPKHIQDVKPLLRFLVNAPTDCFRHREKELMQNIQEALKKSLIGQPIEDID 258 (396)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHcCchHHhhhcchhHHHHHHHHHHHhhcCCcHHHHH
Confidence 55444 44444 8999999999999999999999999999999885420 0012333
Q ss_pred hcChhcHHHHHHHHHHHHHHHhCCCCCcchHHHHHhcccccC
Q 020769 278 LFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIYLQAGLSALN 319 (321)
Q Consensus 278 L~~~~rw~~L~~~F~~~~~~l~gl~~~s~L~~~l~aGlsaLk 319 (321)
- -..-|..|...|.++||+..|+|.+|||...+.+|.+|+.
T Consensus 259 k-vnk~~k~l~~lF~~eycaa~gm~~~spL~~~v~tG~iaf~ 299 (396)
T COG5109 259 K-VNKSRKKLIELFKSEYCAANGMPNRSPLRELVETGTIAFL 299 (396)
T ss_pred H-hhhhHHHHHHHHHHHHHHhcCCCccChHHHHHHhhhHHHH
Confidence 1 1457999999999999999999999999999999999863
No 7
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=99.37 E-value=7.5e-13 Score=94.46 Aligned_cols=55 Identities=38% Similarity=0.583 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHHHHHHhcCCh
Q 020769 181 FQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENN 235 (321)
Q Consensus 181 f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~ 235 (321)
|.++.+|+++|..||+++|++||+++++.+.+.+|.++|.||+|+||||++.|+.
T Consensus 2 ~~~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 2 FDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCCc
Confidence 6789999999999999999999999999999999999999999999999998864
No 8
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.86 E-value=3e-05 Score=48.53 Aligned_cols=32 Identities=34% Similarity=0.689 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHHHHhChHHHHHHHHHHhCCC
Q 020769 142 NNTRVKRILVDYMLRMSYYETAEKLAESSNIQ 173 (321)
Q Consensus 142 ~~~~l~rlI~dyLlR~G~~~tA~~l~~e~~i~ 173 (321)
.+..++++|++||.++||.++|.+|.+++|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 46789999999999999999999999999875
No 9
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=97.79 E-value=4e-05 Score=46.35 Aligned_cols=27 Identities=26% Similarity=0.575 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHh
Q 020769 144 TRVKRILVDYMLRMSYYETAEKLAESS 170 (321)
Q Consensus 144 ~~l~rlI~dyLlR~G~~~tA~~l~~e~ 170 (321)
+.||++|.+||.++||.+||.+|++|+
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 479999999999999999999999985
No 10
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.46 E-value=0.0016 Score=63.28 Aligned_cols=120 Identities=12% Similarity=0.115 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHhCCCC-cccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHh
Q 020769 143 NTRVKRILVDYMLRMSYYETAEKLAESSNIQD-LVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQL 221 (321)
Q Consensus 143 ~~~l~rlI~dyLlR~G~~~tA~~l~~e~~i~~-~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~L 221 (321)
...+-|++.+.|+..||.+++..+..++||-- ..+.. ...+.++.|+++.|+.-...-.-...+......|.+
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~k------lf~q~vlqg~w~q~v~~~~~i~~~de~~~~ea~fLv 90 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTK------LFDQQVLQGQWDQQVMSLVRISFEDERNRKEAMFLV 90 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHH------HHHHHHHcccHHHHHHHHhhccCcchhhhHHHHHHH
Confidence 35778999999999999999999999999952 23344 466788999999998877655333344456788999
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHhHhhccCC
Q 020769 222 RLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSN 269 (321)
Q Consensus 222 r~q~fIELir~~~~~eAi~yark~l~~~~~~~~~ei~~~m~lLaf~~~ 269 (321)
..|.|+|+++.|++.+|+...|..+.+... +.+.+.++...|++.+.
T Consensus 91 ~kQ~fLEf~k~~~is~al~~l~~~~~~lr~-~~kk~~el~~sll~sn~ 137 (519)
T KOG0293|consen 91 NKQIFLEFLKTGSISHALPVLRNPVLYLRK-NKKKFHELASSLLVSND 137 (519)
T ss_pred HHHHHHHHHhhccHhhhhHhhhcchhhhhh-hHHHHHHHHHHHhcccc
Confidence 999999999999999999999976766543 67778888888887654
No 11
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]
Probab=95.39 E-value=0.0069 Score=60.88 Aligned_cols=164 Identities=12% Similarity=0.040 Sum_probs=126.9
Q ss_pred HHHHHHHHHhChHHHHHHHHHHhCCC-Ccc-c--HHHHH--------HHHHHHHHHHcCChHHHHHHHHhhhhHhhh---
Q 020769 148 RILVDYMLRMSYYETAEKLAESSNIQ-DLV-D--IEVFQ--------EAKKVIDALQNKEVAPALAWCSDNKSRLKK--- 212 (321)
Q Consensus 148 rlI~dyLlR~G~~~tA~~l~~e~~i~-~~~-d--~e~f~--------~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k--- 212 (321)
..+..|++..|+.+++..++....-. +.+ . ...+. .+.......-.+-+..+.+.|.+..+..++
T Consensus 254 ~~~~~~~l~~~~~~s~~~~s~~~~~~~~~~~~~e~~s~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~ 333 (469)
T KOG1477|consen 254 VPYPYFLLPGGYEESIAYFSTGARRFNDPFTGKEENSIDAVGSQTDKIGLDYHQRKGRGQFTRNGAYNAALIPTYRKVGQ 333 (469)
T ss_pred CCccceecCcchhhhhhhhcchhhccCCcccchhhhhhhccccccchhhhhhhhhcCcceeechhhhcccccccccccce
Confidence 47888999999999988887654321 111 0 01111 112222223356677788888877777666
Q ss_pred ----cCChhhHHhhHHHHHHHHhcCChHHHHHHHHHhccchhh-----hcHHHHHHHHhHhhccCCCCCCchhhhcChhc
Q 020769 213 ----SKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGA-----THMKELQRVMATLAFKSNTECTTYKALFEPKQ 283 (321)
Q Consensus 213 ----~~s~LeF~Lr~q~fIELir~~~~~eAi~yark~l~~~~~-----~~~~ei~~~m~lLaf~~~~~~~~y~~L~~~~r 283 (321)
..+..-+.++++.+|.+.+.|.+...++|-+..+++... ...+.++.+++||+|.++.+ ++-..+.++..
T Consensus 334 ~~~~~~~~~~~~~~~~~~v~~~~~g~v~~e~~~~k~~l~~~~g~~~~~~~~~~~~~s~~Llays~p~~-s~~g~~~~~~~ 412 (469)
T KOG1477|consen 334 VFEVDYPQRGAKDPCGLHVNLGRAGFVFIEANAKKWELAKDYGIKKNSAAVGMLSDSSSLLAYSDPEE-SPVGYLLDPIQ 412 (469)
T ss_pred eecccccchhhccchhhhhhHHHHHHHHHHHHHHHHhhhhhhCcCccccccccccchHHHHHhcCccc-CccccccCccc
Confidence 347889999999999999999999999999999988766 34678999999999999865 67788889999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCcchHHHHH
Q 020769 284 WDFLVDQFKQEFCKLYGMTLEPLLNIYLQ 312 (321)
Q Consensus 284 w~~L~~~F~~~~~~l~gl~~~s~L~~~l~ 312 (321)
.+-+++..+.+++...+.+.+++|..++.
T Consensus 413 ~e~v~~~~n~~il~t~~~~~~~~l~~~l~ 441 (469)
T KOG1477|consen 413 REPVAEALNSAILETDNNSKDPDLERVLS 441 (469)
T ss_pred chhHHhhhcccccccCCCCccchhhhhhc
Confidence 99999999999999999999999887764
No 12
>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID. The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.
Probab=89.95 E-value=1.1 Score=37.80 Aligned_cols=48 Identities=13% Similarity=0.405 Sum_probs=43.1
Q ss_pred ChhhHHhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHh
Q 020769 215 SKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMA 262 (321)
Q Consensus 215 s~LeF~Lr~q~fIELir~~~~~eAi~yark~l~~~~~~~~~ei~~~m~ 262 (321)
+.+-|=+.+.-|++||..|...+|..|..++-..+...|..+|+++.+
T Consensus 38 ~~lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~ 85 (142)
T PF04494_consen 38 SRLLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSS 85 (142)
T ss_dssp GGGHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 568999999999999999999999999999999998888888888865
No 13
>KOG1333 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.72 E-value=14 Score=33.18 Aligned_cols=141 Identities=16% Similarity=0.213 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHcCChHHHHH-HH---HhhhhHhhhcC----C
Q 020769 144 TRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALA-WC---SDNKSRLKKSK----S 215 (321)
Q Consensus 144 ~~l~rlI~dyLlR~G~~~tA~~l~~e~~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~-W~---~~n~~~L~k~~----s 215 (321)
.++|.++-+||+-.|+..|-++|-.|...+.......=..+-+..+++..+|++..-+ |- +.-.++|.... .
T Consensus 6 ~~tDelvReYL~frgf~~tLkalD~E~~~~Ke~~frvdrivdq~~~a~q~~Dl~aLr~~W~~l~~r~Fs~Le~~y~~~~~ 85 (241)
T KOG1333|consen 6 ERTDELVREYLLFRGFTHTLKALDAEIKADKEKGFRVDRIVDQLQQAMQVYDLAALRDYWSYLERRLFSRLEDIYRPTIH 85 (241)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhHHHhhhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 5789999999999999999888877765543222111122234456667777765333 22 23334443332 3
Q ss_pred hhhHHhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHhHhhccCCCCCCchhhhcChhcHHHH
Q 020769 216 KFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFL 287 (321)
Q Consensus 216 ~LeF~Lr~q~fIELir~~~~~eAi~yark~l~~~~~~~~~ei~~~m~lLaf~~~~~~~~y~~L~~~~rw~~L 287 (321)
.||-.|.+...+--|..++...|=+|.+|.-+... +..|=+.-+.+=..+...+.+|++..|+. .|.++
T Consensus 86 kle~Sl~r~yLV~~~q~nr~~K~~EFF~K~a~~lq--nq~eWkDWF~fPf~~~a~~tppf~~~F~k-tw~e~ 154 (241)
T KOG1333|consen 86 KLETSLFRFYLVYTIQTNRNDKAQEFFAKQATELQ--NQAEWKDWFVLPFLPSAKDTPPFRKYFDK-TWIEI 154 (241)
T ss_pred HHHHHHHHHHHhhhhhcCChHHHHHHHHHHHHHHh--cchhhhhheecccCCCCCCCccHHHHHHh-hhhHh
Confidence 46666777777777778888888888876433221 22333333333223334456788887754 57654
No 14
>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID). The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various
Probab=86.70 E-value=1.5 Score=36.45 Aligned_cols=64 Identities=11% Similarity=0.327 Sum_probs=49.3
Q ss_pred HHHHhhhhHhhhcCChhhHHhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHhHh
Q 020769 201 AWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATL 264 (321)
Q Consensus 201 ~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~~eAi~yark~l~~~~~~~~~ei~~~m~lL 264 (321)
.|+.+.-..-+..=+.+-|=+.+.-|++||.+|...+|..|..++-.-+...|.++|+++.++.
T Consensus 13 ~wv~~~ld~~k~EL~~lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~ 76 (133)
T cd08044 13 KWIESSLDIYKYELSQLLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSIT 76 (133)
T ss_pred HHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccC
Confidence 4665552222222256889999999999999999999999999988888777888888886654
No 15
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=81.34 E-value=34 Score=29.34 Aligned_cols=74 Identities=9% Similarity=0.154 Sum_probs=35.8
Q ss_pred HHHHHHHHHhChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHHH
Q 020769 148 RILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFI 227 (321)
Q Consensus 148 rlI~dyLlR~G~~~tA~~l~~e~~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fI 227 (321)
.-|...|-.....|....-....+. .+..+.|..+- ..++.||+++.+|...-....-.+-|+--+.+.+
T Consensus 66 e~I~~~L~yF~~Ld~itr~Ln~p~~--sV~~~~F~~~L--------~~LD~cl~Fl~~h~~fkea~~Y~~rf~q~ltRAl 135 (157)
T PF04136_consen 66 EEISEKLQYFEELDPITRRLNSPGS--SVNSDSFKPML--------SRLDECLEFLEEHPNFKEAEVYLIRFRQCLTRAL 135 (157)
T ss_pred HHHHHHhHHHhhHHHHHHHHcCCCC--cccchHHHHHH--------HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Confidence 3344444444444443333333332 24455564432 2478999999998654332222334444444444
Q ss_pred HHHh
Q 020769 228 ELVR 231 (321)
Q Consensus 228 ELir 231 (321)
.|||
T Consensus 136 ~lIk 139 (157)
T PF04136_consen 136 TLIK 139 (157)
T ss_pred HHHH
Confidence 4444
No 16
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=80.63 E-value=32 Score=30.46 Aligned_cols=121 Identities=17% Similarity=0.285 Sum_probs=61.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------C-CC--ChHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Q 020769 49 RVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDS------E-NF--SKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQ 119 (321)
Q Consensus 49 ~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~------~-~~--~~~~~~~~ld~li~kl~~lk~kl~~~~~~e~~~ 119 (321)
.-|.+..++..+.. ..+.+++..+...+.++... + .. .....++.+..+-..+..++.++.......-..
T Consensus 58 sFps~~~~~~~~~~-~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~ 136 (188)
T PF03962_consen 58 SFPSQAKQKRQNKL-EKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEK 136 (188)
T ss_pred ecChHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence 34777777665554 44555555555555555331 1 11 123344555555555555555555333222233
Q ss_pred HHHHHHHHHhccccCcchhhhhcHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCccc
Q 020769 120 AQKCRARLNHLESADAENLAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVD 177 (321)
Q Consensus 120 ~~~~~~Rl~~L~~~~~~~~~~w~~~~l~rlI~dyLlR~G~~~tA~~l~~e~~i~~~~d 177 (321)
+...+..+..+ ......|. .---+|..|+.+. +.-....|.++.||++..|
T Consensus 137 i~~~~~~~~~~----~~~anrwT--DNI~~l~~~~~~k-~~~~~~~i~k~f~Ip~d~d 187 (188)
T PF03962_consen 137 IEKLKEEIKIA----KEAANRWT--DNIFSLKSYLKKK-FGMDEEDIRKEFGIPEDFD 187 (188)
T ss_pred HHHHHHHHHHH----HHHHHHHH--hhHHHHHHHHHHh-cCCCHHHHHHHcCCccccC
Confidence 44443333332 22334562 2234677787773 2233566778999985443
No 17
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=79.60 E-value=14 Score=30.60 Aligned_cols=58 Identities=9% Similarity=0.135 Sum_probs=45.6
Q ss_pred HHHHHHHHhChHHHHHHHHHHhC--C-CCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhh
Q 020769 149 ILVDYMLRMSYYETAEKLAESSN--I-QDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNK 207 (321)
Q Consensus 149 lI~dyLlR~G~~~tA~~l~~e~~--i-~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~ 207 (321)
-|.+.+ +.|-.+.|-..+.+.. + +...+........+..+-|+.|++.+|++|++++-
T Consensus 7 ~I~~~I-~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l 67 (145)
T PF10607_consen 7 KIRQAI-LNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHL 67 (145)
T ss_pred HHHHHH-HcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 356666 8899999988887643 2 22355677778889999999999999999999975
No 18
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=73.17 E-value=39 Score=32.66 Aligned_cols=139 Identities=17% Similarity=0.149 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHhCCC-CcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhh
Q 020769 144 TRVKRILVDYMLRMSYYETAEKLAESSNIQ-DLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLR 222 (321)
Q Consensus 144 ~~l~rlI~dyLlR~G~~~tA~~l~~e~~i~-~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr 222 (321)
..+-|+|.+||-.+....+-..|.+|.++. +.+| ......++|.+|.++..|.-.+..+-- -.-.-.|+
T Consensus 8 sdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVD-----Svd~Fv~dI~sG~WD~VL~~vqsLKLP-----~kkL~dLY 77 (508)
T KOG0275|consen 8 SDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVD-----SVDGFVNDINSGHWDTVLKTVQSLKLP-----DKKLIDLY 77 (508)
T ss_pred chHHHHHHHHHhhhhHHHHHHHHHHhhccceeech-----hHHHHHHhcccCchHHHHHHHHhccCc-----hhHHHHHH
Confidence 467899999999999999999999998875 2232 122356789999999999888766432 22235788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhccchh--hhcHHHHHHHHhHhh--ccCCCCCCchhhhcChhcHHHHHHHHHHH
Q 020769 223 LQEFIELVRGENNLRAITYARKYLAPWG--ATHMKELQRVMATLA--FKSNTECTTYKALFEPKQWDFLVDQFKQE 294 (321)
Q Consensus 223 ~q~fIELir~~~~~eAi~yark~l~~~~--~~~~~ei~~~m~lLa--f~~~~~~~~y~~L~~~~rw~~L~~~F~~~ 294 (321)
-|-.+|||.-.....|-..+|+--+-.. ...++..-++-.+|. |-+| ...|.+--.+.|+..+|.....+
T Consensus 78 EqivlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp--~EaY~dssKEkrRa~IAQ~ls~E 151 (508)
T KOG0275|consen 78 EQIVLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDP--REAYGDSSKEKRRAVIAQALSGE 151 (508)
T ss_pred HHHHHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccCh--hhhcCcchHHHHHHHHHHHhcCc
Confidence 8888898887766666666664322211 122334444444554 3333 23466644456777777766443
No 19
>PHA01750 hypothetical protein
Probab=67.46 E-value=36 Score=24.97 Aligned_cols=49 Identities=16% Similarity=0.403 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q 020769 52 FEHYKKTIRTNHRA-VEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEE 111 (321)
Q Consensus 52 ~E~l~k~fr~~qk~-ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lk~kl~~ 111 (321)
|=-++..||.+-+. +.+|++++...+.+++. +.|.+-+++..+|||++.
T Consensus 25 YlKIKq~lkdAvkeIV~~ELdNL~~ei~~~ki-----------kqDnl~~qv~eik~k~dk 74 (75)
T PHA01750 25 YLKIKQALKDAVKEIVNSELDNLKTEIEELKI-----------KQDELSRQVEEIKRKLDK 74 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hHHHHHHHHHHHHHhhcc
Confidence 33456677776554 45688888887777653 456677888888888754
No 20
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=65.63 E-value=43 Score=27.80 Aligned_cols=29 Identities=10% Similarity=0.271 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 020769 55 YKKTIRTNHRAVEKEITSVISNVADVSDS 83 (321)
Q Consensus 55 l~k~fr~~qk~ieke~~~v~~~~~~l~~~ 83 (321)
=||++.++-..|-+.+++|...+...++.
T Consensus 37 Trr~m~~A~~~v~kql~~vs~~l~~tKkh 65 (126)
T PF07889_consen 37 TRRSMSDAVASVSKQLEQVSESLSSTKKH 65 (126)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999999887664
No 21
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=65.14 E-value=51 Score=34.29 Aligned_cols=113 Identities=15% Similarity=0.233 Sum_probs=47.8
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHH----HHHHHHHHHhhchHHHHHHHHH
Q 020769 48 LRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSR----LQGLKRKLEEGSRTEHLQAQKC 123 (321)
Q Consensus 48 ~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~k----l~~lk~kl~~~~~~e~~~~~~~ 123 (321)
+-+.-..|.+|.+.+-....+-+..+...+...+. |+.++..+++. |+.|-.+|.+.-..=...++-+
T Consensus 239 val~t~VL~~NQk~iA~sFN~Ai~~I~~g~~t~~~--------Al~KiQ~VVN~q~~aL~~L~~qL~nnF~AISssI~dI 310 (610)
T PF01601_consen 239 VALQTDVLQENQKIIANSFNKAIGNIQLGFTTTAS--------ALNKIQDVVNQQGQALNQLTSQLSNNFGAISSSIQDI 310 (610)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred eeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 45566778888777777777777777776654432 55555555544 4445555555444444567777
Q ss_pred HHHHHhcc-ccCcchhhhhcHHHHHHHHHHHHHHhChHHHHHHHHH
Q 020769 124 RARLNHLE-SADAENLAEWNNTRVKRILVDYMLRMSYYETAEKLAE 168 (321)
Q Consensus 124 ~~Rl~~L~-~~~~~~~~~w~~~~l~rlI~dyLlR~G~~~tA~~l~~ 168 (321)
..|++.|. +...+.+..-.-..||-.+...|.++--......|++
T Consensus 311 y~RLd~leAdaQVDRLItGRL~aLnafVtq~l~~~~evr~sr~LA~ 356 (610)
T PF01601_consen 311 YNRLDQLEADAQVDRLITGRLAALNAFVTQQLTKYTEVRASRQLAQ 356 (610)
T ss_dssp HHHHHHHHHH------------------------------------
T ss_pred HHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888776 2333333333334555555555555544444444443
No 22
>PF09398 FOP_dimer: FOP N terminal dimerisation domain; InterPro: IPR018993 Fibroblast growth factor receptor 1 (FGFR1) oncogene partner (FOP) is a centrosomal protein that is involved in anchoring microtubules to centrosomes. This domain includes a Lis-homology motif. It forms an alpha-helical bundle and is involved in dimerisation []. ; GO: 0034453 microtubule anchoring, 0005813 centrosome; PDB: 2D68_A.
Probab=63.64 E-value=15 Score=28.15 Aligned_cols=32 Identities=9% Similarity=0.082 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHhCCCCc
Q 020769 144 TRVKRILVDYMLRMSYYETAEKLAESSNIQDL 175 (321)
Q Consensus 144 ~~l~rlI~dyLlR~G~~~tA~~l~~e~~i~~~ 175 (321)
..++.+|.|||--+||.-|+..|..|+|....
T Consensus 19 ~Li~eLIrEyLef~~l~~TlsVf~~Es~~~~~ 50 (81)
T PF09398_consen 19 RLINELIREYLEFNNLDYTLSVFQPESGQPEE 50 (81)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHT-TT-
T ss_pred HHHHHHHHHHHHHcCCccHHHHHhhccCCCCC
Confidence 56799999999999999999999999999753
No 23
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=58.71 E-value=1.8e+02 Score=30.19 Aligned_cols=33 Identities=24% Similarity=0.174 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcC
Q 020769 182 QEAKKVIDALQNKEVAPALAWCSDNKSRLKKSK 214 (321)
Q Consensus 182 ~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~ 214 (321)
..+..+..++.+|++-.|+.++.+-+..|...+
T Consensus 110 ~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~ 142 (593)
T PF06248_consen 110 ELLEEVEEALKEGNYLDAADLLEELKSLLDDLK 142 (593)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcC
Confidence 345667778889999999999999999887753
No 24
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=58.01 E-value=1.9e+02 Score=29.89 Aligned_cols=163 Identities=15% Similarity=0.305 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcc------
Q 020769 58 TIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLE------ 131 (321)
Q Consensus 58 ~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lk~kl~~~~~~e~~~~~~~~~Rl~~L~------ 131 (321)
..+..-..+|.++..+...+.++..+ .+.-...++.+-++.+.+|+.+......-...+..+..+++.+.
T Consensus 105 ~~~~~l~~~e~~i~~i~~~l~~L~~~----e~~nr~~i~~l~~~y~~lrk~ll~~~~~~G~a~~~Le~~L~~ie~~F~~f 180 (560)
T PF06160_consen 105 EIEEQLDEIEEDIKEILDELDELLES----EEKNREEIEELKEKYRELRKELLAHSFSYGPAIEELEKQLENIEEEFSEF 180 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHHHHHHH
Confidence 34455567788888888888877664 22234556667777777777776655444445555555544443
Q ss_pred -----ccCcc---------------------hhhhhcHHHHHHHHHHHH--HHhChHHHHHHHHHHhCCCCc-cc--H-H
Q 020769 132 -----SADAE---------------------NLAEWNNTRVKRILVDYM--LRMSYYETAEKLAESSNIQDL-VD--I-E 179 (321)
Q Consensus 132 -----~~~~~---------------------~~~~w~~~~l~rlI~dyL--lR~G~~~tA~~l~~e~~i~~~-~d--~-e 179 (321)
+.|.. ..+... ..+...+-+.| ++.||.+.- .+.+.+++. ++ + +
T Consensus 181 ~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~-~~l~~~~P~ql~eL~~gy~~m~---~~gy~l~~~~i~~~i~~ 256 (560)
T PF06160_consen 181 EELTENGDYLEAREILEKLKEETDELEEIMEDIPKLY-KELQKEFPDQLEELKEGYREME---EEGYYLEHLDIEEEIEQ 256 (560)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHhHHHHHHHHHHHHHHH---HCCCCCCCCCHHHHHHH
Confidence 11100 000000 00010111111 122332221 112333331 11 1 1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHHHH
Q 020769 180 VFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIE 228 (321)
Q Consensus 180 ~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIE 228 (321)
+=..+......|.+++++.|-+...+-...+...-..|+=++.-.++++
T Consensus 257 i~~~l~~~~~~L~~l~l~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~ 305 (560)
T PF06160_consen 257 IEEQLEEALALLKNLELDEVEEENEEIEERIDQLYDILEKEVEAKKYVE 305 (560)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2234455566778999999999999999888887777887777777666
No 25
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=57.06 E-value=84 Score=23.88 Aligned_cols=77 Identities=16% Similarity=0.356 Sum_probs=44.3
Q ss_pred ccccHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 020769 48 LRVPFEHYKKTI---RTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCR 124 (321)
Q Consensus 48 ~~vP~E~l~k~f---r~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lk~kl~~~~~~e~~~~~~~~ 124 (321)
+..|.+.+..++ +..|..+--.++.....+.++..... ..+.. .++.-+.||..+|+++.... ..++.++
T Consensus 12 l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~--~~~~~-~~~~y~~KL~~ikkrm~~l~----~~l~~lk 84 (92)
T PF14712_consen 12 LEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQ--INEPF-DLDPYVKKLVNIKKRMSNLH----ERLQKLK 84 (92)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhhHH-HhhHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 344555555543 45566666677777777766654100 00011 13337777888888776653 4566777
Q ss_pred HHHHhcc
Q 020769 125 ARLNHLE 131 (321)
Q Consensus 125 ~Rl~~L~ 131 (321)
.|+.+|+
T Consensus 85 ~R~~~L~ 91 (92)
T PF14712_consen 85 KRADKLQ 91 (92)
T ss_pred HHHHhhc
Confidence 7877764
No 26
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=56.80 E-value=1e+02 Score=28.96 Aligned_cols=81 Identities=15% Similarity=0.216 Sum_probs=42.2
Q ss_pred ccccccHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Q 020769 46 QFLRVPFEHYKKTIRTNHRAVE---KEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQK 122 (321)
Q Consensus 46 ~~~~vP~E~l~k~fr~~qk~ie---ke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lk~kl~~~~~~e~~~~~~ 122 (321)
|.+--|.-.|-+.-|..-...| +|...+.+.+..+...++-+-.++..+|..|+..+..+........+.-...++.
T Consensus 53 pe~sr~L~~LIk~EK~vi~s~e~~are~~~~A~~L~~WG~~edddl~DIsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~ 132 (271)
T PF13805_consen 53 PELSRKLQRLIKAEKSVIRSLESAARERKAAAKQLSEWGEQEDDDLSDISDKLGVLLYEIGELEDQYADRLDQYRIHLKS 132 (271)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444445554444444433 3666666666666554333345566667777777666666665544433334444
Q ss_pred HHHH
Q 020769 123 CRAR 126 (321)
Q Consensus 123 ~~~R 126 (321)
++.|
T Consensus 133 IR~~ 136 (271)
T PF13805_consen 133 IRNR 136 (271)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 27
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=56.68 E-value=62 Score=22.31 Aligned_cols=64 Identities=14% Similarity=0.071 Sum_probs=39.4
Q ss_pred HHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHH
Q 020769 191 LQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVM 261 (321)
Q Consensus 191 L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~~eAi~yark~l~~~~~~~~~ei~~~m 261 (321)
+..|+++.|++.++.--. ....+.+ ++..-..-+++.|+..+|..+..+.+....+ ..++..++
T Consensus 2 l~~~~~~~A~~~~~~~l~---~~p~~~~--~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~--~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQ---RNPDNPE--ARLLLAQCYLKQGQYDEAEELLERLLKQDPD--NPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHH---HTTTSHH--HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT--HHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHH---HCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--HHHHHHHH
Confidence 678999999999876532 2222333 3334455577889999999999865544332 14444444
No 28
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=56.00 E-value=99 Score=31.22 Aligned_cols=71 Identities=18% Similarity=0.312 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhhchHHHHHHHHHHHHHHhccccC----------------cchhhhhcHHHHHHHHHH
Q 020769 90 DAVNHLTSLVSR-LQGLKRKLEEGSRTEHLQAQKCRARLNHLESAD----------------AENLAEWNNTRVKRILVD 152 (321)
Q Consensus 90 ~~~~~ld~li~k-l~~lk~kl~~~~~~e~~~~~~~~~Rl~~L~~~~----------------~~~~~~w~~~~l~rlI~d 152 (321)
+..+.|+.+... .+++++++++...++-+-.....++|..+-... +-....|....|.++|-+
T Consensus 128 ~~~~~Ll~~~~~~~e~f~e~l~~~~~~s~~~~~~~~~~i~~~lg~~~~la~e~~~Lt~~Lk~~ktrG~wGEv~Le~ILe~ 207 (448)
T COG1322 128 QNLKQLLKPLREVLEKFREQLEQRIHESAEERSTLLEEIDRLLGEIQQLAQEAGNLTAALKGNKTRGNWGEVQLERILED 207 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccHHHHHHHHHHHH
Confidence 455555555543 456677776655555444444444443333110 234578999999999999
Q ss_pred HHHHhChH
Q 020769 153 YMLRMSYY 160 (321)
Q Consensus 153 yLlR~G~~ 160 (321)
.+++.||.
T Consensus 208 ~gl~~~~e 215 (448)
T COG1322 208 SGLREGYE 215 (448)
T ss_pred hCchhccc
Confidence 99999984
No 29
>PF14769 CLAMP: Flagellar C1a complex subunit C1a-32
Probab=55.38 E-value=50 Score=25.92 Aligned_cols=26 Identities=19% Similarity=0.476 Sum_probs=22.4
Q ss_pred hhhcChhcHHHHHHHHHHHHHHHhCC
Q 020769 276 KALFEPKQWDFLVDQFKQEFCKLYGM 301 (321)
Q Consensus 276 ~~L~~~~rw~~L~~~F~~~~~~l~gl 301 (321)
..+|+.+....+++-|...|++.|.+
T Consensus 61 ~~iFs~~~~~~i~~y~~~t~frHykL 86 (101)
T PF14769_consen 61 IGIFSVDQVKAIIDYFHNTYFRHYKL 86 (101)
T ss_pred cCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999998887653
No 30
>PF10154 DUF2362: Uncharacterized conserved protein (DUF2362); InterPro: IPR019311 This is a family of proteins conserved from nematodes to humans. The function is not known.
Probab=54.21 E-value=52 Score=33.74 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=66.0
Q ss_pred CCCCCchhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q 020769 32 PKLTQLTEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEE 111 (321)
Q Consensus 32 ~~~~~~~~~l~le~~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lk~kl~~ 111 (321)
.+||.++..|.+|+...+.=-|+++++=...+|.-+|....+...+..+... .+..++......-.+..+.++.+|..
T Consensus 101 iHSpaletLL~LE~~Ya~~vseli~~Rd~el~kl~~rq~~Eme~a~q~Lg~~--ltd~dIN~laaqH~Ee~q~ie~kw~s 178 (510)
T PF10154_consen 101 IHSPALETLLQLEHNYAKAVSELIQARDQELKKLQERQTEEMEKAMQKLGIS--LTDRDINHLAAQHFEEQQRIESKWSS 178 (510)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999999899999999999999999888888888887553 55566777777778888888888877
Q ss_pred hch
Q 020769 112 GSR 114 (321)
Q Consensus 112 ~~~ 114 (321)
.+.
T Consensus 179 eL~ 181 (510)
T PF10154_consen 179 ELK 181 (510)
T ss_pred HHH
Confidence 553
No 31
>smart00030 CLb CLUSTERIN Beta chain.
Probab=53.22 E-value=1.5e+02 Score=26.68 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=38.4
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHH
Q 020769 50 VPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKL 109 (321)
Q Consensus 50 vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lk~kl 109 (321)
+|-+.|+.--....|.|++|+.+.+..+.+++.-.+ -..+.-..++..|+..|++=
T Consensus 4 ~~~~~Lk~lS~~G~kyvd~EI~nAl~GvKqMK~~me----r~~eeh~~ll~tLe~~kk~K 59 (206)
T smart00030 4 VSDNELQEMSTQGSKYINKEIKNALKGVKQIKTLIE----KTNKERKSLLSTLEEAKKKK 59 (206)
T ss_pred CChhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HhhHHHHHHHHHHHHHHHHH
Confidence 577888888999999999999999999998865211 11223334555555544443
No 32
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=52.84 E-value=2.4e+02 Score=27.79 Aligned_cols=59 Identities=17% Similarity=0.331 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHhhc
Q 020769 55 YKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGS 113 (321)
Q Consensus 55 l~k~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lk~kl~~~~ 113 (321)
+....+.-.+.++.|+.............+...-+++...+..|++++..+|.+.+++-
T Consensus 26 ~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~~sE 84 (383)
T PF04100_consen 26 LIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAEESE 84 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566666666655544433222223346788889999999999999987753
No 33
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=52.66 E-value=1.4e+02 Score=25.05 Aligned_cols=76 Identities=11% Similarity=0.219 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC---CCChHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcc
Q 020769 56 KKTIRTNHRAVEKEITSVISNVADVSDSE---NFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLE 131 (321)
Q Consensus 56 ~k~fr~~qk~ieke~~~v~~~~~~l~~~~---~~~~~~~~~~ld~li~kl~~lk~kl~~~~~~e~~~~~~~~~Rl~~L~ 131 (321)
.-.|+...+.+=+.+..-...|..|-.+. +.+.++..+.|..|-+.+....+++.+.+++-+..+.++...+..+.
T Consensus 64 ~~~~~~~~~elA~dIi~kakqIe~LIdsLPg~~~see~Q~~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~i~~ia 142 (144)
T PF11221_consen 64 PEEFEENIKELATDIIRKAKQIEYLIDSLPGIEVSEEEQLKRIKELEEENEEAEEELQEAVKEAEELLKQVQELIREIA 142 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566666776666666666666554432 45678888999999999999999999999888899999988887654
No 34
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=50.90 E-value=2.3e+02 Score=27.03 Aligned_cols=113 Identities=20% Similarity=0.253 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHH-HHHHHHHHHHHHhccccCcchhhhhcHHHHHHHHHHHHHHhChHHHHHHHH
Q 020769 89 DDAVNHLTSLVSRLQGLKRKLEEGSRTE-HLQAQKCRARLNHLESADAENLAEWNNTRVKRILVDYMLRMSYYETAEKLA 167 (321)
Q Consensus 89 ~~~~~~ld~li~kl~~lk~kl~~~~~~e-~~~~~~~~~Rl~~L~~~~~~~~~~w~~~~l~rlI~dyLlR~G~~~tA~~l~ 167 (321)
+.+...+..+|++|+.-+++|-+..... ..-++.+..++.||. ....|-+.-..+++-|.+|+
T Consensus 38 elIr~rVrq~V~hVqaqEreLLe~v~~rYqR~y~ema~~L~~Le-------avLqRir~G~~LVekM~~YA--------- 101 (324)
T PF12126_consen 38 ELIRARVRQVVAHVQAQERELLEAVEARYQRDYEEMAGQLGRLE-------AVLQRIRTGGALVEKMKLYA--------- 101 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHhHHHHHHHHHHhc---------
Confidence 4566788889999998888887655333 344556666677775 23334444555566555554
Q ss_pred HHhCCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhH----hhhcCChhhHHhhHHHHHHHHhcCC
Q 020769 168 ESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSR----LKKSKSKFEFQLRLQEFIELVRGEN 234 (321)
Q Consensus 168 ~e~~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~----L~k~~s~LeF~Lr~q~fIELir~~~ 234 (321)
.|-+++.--.-|+++| .-+..-.|. .-...+--||+.++|.++.-|..|.
T Consensus 102 --------SDQEVLdMh~FlreAL---------~rLrqeePq~lqa~V~td~F~E~k~rLQ~L~scItq~t 155 (324)
T PF12126_consen 102 --------SDQEVLDMHGFLREAL---------ERLRQEEPQNLQAAVRTDGFDEFKARLQDLVSCITQGT 155 (324)
T ss_pred --------chHHHHHHHHHHHHHH---------HHhhhhcCcccccceecccHHHHHHHHHHHHHHHhcCc
Confidence 2223322222334433 333333332 2223456799999999999998774
No 35
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=48.38 E-value=66 Score=29.47 Aligned_cols=65 Identities=11% Similarity=0.152 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhChHHHHHHHHHHhCCC---CcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhh
Q 020769 147 KRILVDYMLRMSYYETAEKLAESSNIQ---DLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLK 211 (321)
Q Consensus 147 ~rlI~dyLlR~G~~~tA~~l~~e~~i~---~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~ 211 (321)
.|+.+.++...|-.+.|..+..+..-+ ...++..+....+..+.|+.|.+..||++.+.+-...-
T Consensus 67 eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a 134 (228)
T KOG2659|consen 67 ERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFA 134 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccc
Confidence 478899999999999999988775532 22234455667788999999999999999987754433
No 36
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=46.13 E-value=28 Score=25.59 Aligned_cols=25 Identities=28% Similarity=0.259 Sum_probs=21.5
Q ss_pred HhhHHHHHHHHhcCChHHHHHHHHH
Q 020769 220 QLRLQEFIELVRGENNLRAITYARK 244 (321)
Q Consensus 220 ~Lr~q~fIELir~~~~~eAi~yark 244 (321)
.|.+++|-+|+..|++.+|.+.|-.
T Consensus 7 ~l~~~~F~~l~~~g~y~eAA~~AA~ 31 (66)
T PF13838_consen 7 DLYVQQFNELFSQGQYEEAAKVAAN 31 (66)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 4688999999999999999999873
No 37
>PF13934 ELYS: Nuclear pore complex assembly
Probab=45.56 E-value=2.3e+02 Score=25.58 Aligned_cols=91 Identities=18% Similarity=0.192 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHH-HcCChHHHHHHHHhhhhHhhhcCChhhHHhh
Q 020769 144 TRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDAL-QNKEVAPALAWCSDNKSRLKKSKSKFEFQLR 222 (321)
Q Consensus 144 ~~l~rlI~dyLlR~G~~~tA~~l~~e~~i~~~~d~e~f~~~~~I~~~L-~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr 222 (321)
..+..+=+-|++.+|-++.|-.+.-+..+.. +. -.+|.+.| .+|+-+-|+.+...-+|.+... --
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~ps~~~--~~-----~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~-------~~ 143 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHPSLIP--WF-----PDKILQALLRRGDPKLALRYLRAVGPPLSSP-------EA 143 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCCCCCc--cc-----HHHHHHHHHHCCChhHHHHHHHhcCCCCCCH-------HH
Confidence 4444555666666666666666554433321 00 11355555 4678888888887777766432 11
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhccc
Q 020769 223 LQEFIELVRGENNLRAITYARKYLAP 248 (321)
Q Consensus 223 ~q~fIELir~~~~~eAi~yark~l~~ 248 (321)
..-++.++.++.+.||..|.|++-.+
T Consensus 144 ~~~~~~~La~~~v~EAf~~~R~~~~~ 169 (226)
T PF13934_consen 144 LTLYFVALANGLVTEAFSFQRSYPDE 169 (226)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhCchh
Confidence 22233446667888888888866553
No 38
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=45.42 E-value=1.8e+02 Score=24.21 Aligned_cols=70 Identities=7% Similarity=0.085 Sum_probs=45.5
Q ss_pred hhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCChHHHHHHHHHHHHHHHHHHHHH
Q 020769 40 ALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSE-NFSKDDAVNHLTSLVSRLQGLKRKL 109 (321)
Q Consensus 40 ~l~le~~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~-~~~~~~~~~~ld~li~kl~~lk~kl 109 (321)
.+.-++|..+---+.+++.+...++.++..-..+.....++.+.. .++.+.....-..+-.+.+.+++..
T Consensus 26 ~v~~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~ 96 (158)
T PF03938_consen 26 KVFQESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQ 96 (158)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888888888888888888887777777777775532 3555555555455555555444443
No 39
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=44.29 E-value=1.2e+02 Score=22.04 Aligned_cols=49 Identities=16% Similarity=0.059 Sum_probs=30.8
Q ss_pred HHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHHHHHHhcCChHHHHHHHHH
Q 020769 190 ALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARK 244 (321)
Q Consensus 190 ~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~~eAi~yark 244 (321)
..+.|+...|+.|++. ..... .+ +..+...---+++-|+..+||.+..+
T Consensus 35 ~~~~~~y~~A~~~~~~--~~~~~--~~--~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 35 YFQQGKYEEAIELLQK--LKLDP--SN--PDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHTTHHHHHHHHHHC--HTHHH--CH--HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHH--hCCCC--CC--HHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3478999999999987 22222 22 23333334446667899999987764
No 40
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=44.23 E-value=1.6e+02 Score=25.66 Aligned_cols=83 Identities=24% Similarity=0.360 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHcCCh-HHHHHHHHhhhhHhhhcCChhhHHhh
Q 020769 144 TRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEV-APALAWCSDNKSRLKKSKSKFEFQLR 222 (321)
Q Consensus 144 ~~l~rlI~dyLlR~G~~~tA~~l~~e~~i~~~~d~e~f~~~~~I~~~L~~gdi-~~AL~W~~~n~~~L~k~~s~LeF~Lr 222 (321)
..+..++++=|.+.|.+..-..|.+-.=|++...+.. .-|.-|.. .+|..-+ =++-..|.
T Consensus 29 ~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~--------~LLs~~~~~~~~~Ql~-----------lDMLkRL~ 89 (167)
T PF07035_consen 29 HELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLAC--------QLLSLGNQYPPAYQLG-----------LDMLKRLG 89 (167)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHH--------HHHHhHccChHHHHHH-----------HHHHHHhh
Confidence 5789999999999999998888887666665543221 01111221 2222222 22222332
Q ss_pred --HHHHHH-HHhcCChHHHHHHHHHh
Q 020769 223 --LQEFIE-LVRGENNLRAITYARKY 245 (321)
Q Consensus 223 --~q~fIE-Lir~~~~~eAi~yark~ 245 (321)
.-..+| |+..|++.+|+.|+|+.
T Consensus 90 ~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 90 TAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 334455 88899999999999974
No 41
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=43.95 E-value=1.9e+02 Score=27.79 Aligned_cols=86 Identities=20% Similarity=0.224 Sum_probs=46.5
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----CC--CChHHHHHH-HHHHHHHHHHHHHHHHhh----ch
Q 020769 46 QFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDS----EN--FSKDDAVNH-LTSLVSRLQGLKRKLEEG----SR 114 (321)
Q Consensus 46 ~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~----~~--~~~~~~~~~-ld~li~kl~~lk~kl~~~----~~ 114 (321)
..++.+++.|.+-.+.....++.+-..+.....++... .. ...+.--.. -..++.||+++++.=+.. ..
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~ 102 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQ 102 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888887777666665544444433333221 00 001111111 246667777775554333 24
Q ss_pred HHHHHHHHHHHHHHhcc
Q 020769 115 TEHLQAQKCRARLNHLE 131 (321)
Q Consensus 115 ~e~~~~~~~~~Rl~~L~ 131 (321)
+|.-+...+.+++..|.
T Consensus 103 EEE~ltn~L~rkl~qLr 119 (310)
T PF09755_consen 103 EEEFLTNDLSRKLNQLR 119 (310)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555666677777776
No 42
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=43.51 E-value=89 Score=30.06 Aligned_cols=67 Identities=12% Similarity=0.068 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhC--hHHH------HHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHh
Q 020769 143 NTRVKRILVDYMLRMS--YYET------AEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRL 210 (321)
Q Consensus 143 ~~~l~rlI~dyLlR~G--~~~t------A~~l~~e~-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L 210 (321)
..+.+.++.-|+.+.. ..+. -..|.+-. ||.+. +.-.|+++.+|+..|..||.+.+++||.--...|
T Consensus 111 ~~n~~dv~~~hi~~~~~g~~e~~~~~~~f~~lK~v~~gI~~k-~~~l~iE~~Qi~gyl~kgdtesel~l~~~~~esl 186 (396)
T COG5109 111 ENNCADVVERHISETKDGKDEIIKIRDGFVKLKKVISGISEK-STFLLIEFLQIEGYLSKGDTESELELYLVSHESL 186 (396)
T ss_pred HhhHHHHHHHHHHHhhcCccchhhHHHHHHHHHHHHHhhccc-hhHhHHHHHHhcCccccCCchhhhHHHHHHHHHH
Confidence 3677788999999874 2222 22244433 88643 3567889999999999999999999997654443
No 43
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=43.31 E-value=3.6e+02 Score=27.09 Aligned_cols=107 Identities=13% Similarity=0.284 Sum_probs=58.6
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----CCC-------C-------hHHHHHHHHHHHHHHHH
Q 020769 44 EHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDS-----ENF-------S-------KDDAVNHLTSLVSRLQG 104 (321)
Q Consensus 44 e~~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~-----~~~-------~-------~~~~~~~ld~li~kl~~ 104 (321)
|-..||-=+-.||..+...++.+..-+..|..++..++.. ++. + .+..+.++|.|-+-++.
T Consensus 156 el~~lrrdLavlRQ~~~~~~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~~~Sd~lltkVDDLQD~vE~ 235 (426)
T smart00806 156 ELKSLQRELAVLRQTHNSFFTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLSEDSDSLLTKVDDLQDIIEA 235 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444445566677777777777777777776665431 111 1 24455666666666666
Q ss_pred HHHHHHhhc-hHHH-------HHHHHHHHHHHhccccCcchhhhhcH---HHHHHHH
Q 020769 105 LKRKLEEGS-RTEH-------LQAQKCRARLNHLESADAENLAEWNN---TRVKRIL 150 (321)
Q Consensus 105 lk~kl~~~~-~~e~-------~~~~~~~~Rl~~L~~~~~~~~~~w~~---~~l~rlI 150 (321)
+++-+.+.- .-.. +-++.+.+.+..+.++-..--+.|.+ ..|+.+.
T Consensus 236 LRkDV~~RgVRp~~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~Vc 292 (426)
T smart00806 236 LRKDVAQRGVRPSKKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVC 292 (426)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 666654422 1111 23555566676666554444456654 5666543
No 44
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=42.61 E-value=2.6e+02 Score=25.97 Aligned_cols=96 Identities=10% Similarity=0.041 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHH
Q 020769 147 KRILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQE 225 (321)
Q Consensus 147 ~rlI~dyLlR~G~~~tA~~l~~e~-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~ 225 (321)
...++.-+...|.++-|....+.. .+. .-+......+..|. ...|+++.|++|+.+.-+.... ...+....+..-
T Consensus 117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~--~~~g~~~eA~~~l~~~l~~~~~-~~~~~~~~~~~l 192 (355)
T cd05804 117 LGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVL--EMQGRFKEGIAFMESWRDTWDC-SSMLRGHNWWHL 192 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH--HHcCCHHHHHHHHHhhhhccCC-CcchhHHHHHHH
Confidence 345667778899888887766653 332 22223333333333 3689999999999876443221 233333333333
Q ss_pred HHHHHhcCChHHHHHHHHHhc
Q 020769 226 FIELVRGENNLRAITYARKYL 246 (321)
Q Consensus 226 fIELir~~~~~eAi~yark~l 246 (321)
-.-++..|+..+|+.+.++.+
T Consensus 193 a~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 193 ALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHHHHCCCHHHHHHHHHHHh
Confidence 344677899999999998865
No 45
>PF05205 COMPASS-Shg1: COMPASS (Complex proteins associated with Set1p) component shg1
Probab=42.60 E-value=1.4e+02 Score=23.70 Aligned_cols=65 Identities=14% Similarity=0.218 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhchHHHHHHHHHHHHHHhcccc--C-cchhhhhcHHHHHHHHHHHHHHhChHHHHHHHH
Q 020769 102 LQGLKRKLEEGSRTEHLQAQKCRARLNHLESA--D-AENLAEWNNTRVKRILVDYMLRMSYYETAEKLA 167 (321)
Q Consensus 102 l~~lk~kl~~~~~~e~~~~~~~~~Rl~~L~~~--~-~~~~~~w~~~~l~rlI~dyLlR~G~~~tA~~l~ 167 (321)
+..++|++.... +.....+.+..|+..+-+- + .+....+++..+..+|-.++.|.|++..++...
T Consensus 13 FD~lRk~~l~~~-~~~~~~~~l~~~v~~~v~~~l~~~~~l~~~nk~k~~alI~~~i~rs~~~~~~e~~i 80 (106)
T PF05205_consen 13 FDKLRKECLADF-DTSPAYQNLRQRVEEIVESELERDPWLLSKNKGKARALIEGAIDRSGVYKGVERII 80 (106)
T ss_pred hHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHhcCcccCCcchHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 455666666655 3346677777776555411 1 223455568889999999999999988755443
No 46
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=42.24 E-value=35 Score=23.20 Aligned_cols=29 Identities=14% Similarity=0.105 Sum_probs=24.2
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhccchh
Q 020769 222 RLQEFIELVRGENNLRAITYARKYLAPWG 250 (321)
Q Consensus 222 r~q~fIELir~~~~~eAi~yark~l~~~~ 250 (321)
...++.+.|..|+..+|++++.++-++..
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~ 32 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLL 32 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHh
Confidence 35678899999999999999998776543
No 47
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=40.66 E-value=2.4e+02 Score=29.05 Aligned_cols=91 Identities=19% Similarity=0.240 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHhCCC---CcccHHHHHHHHHHH---H-HHHcCChHHHHHHHHhhhhHhhhcC-
Q 020769 143 NTRVKRILVDYMLRMSYYETAEKLAESSNIQ---DLVDIEVFQEAKKVI---D-ALQNKEVAPALAWCSDNKSRLKKSK- 214 (321)
Q Consensus 143 ~~~l~rlI~dyLlR~G~~~tA~~l~~e~~i~---~~~d~e~f~~~~~I~---~-~L~~gdi~~AL~W~~~n~~~L~k~~- 214 (321)
...+|--.+-|++|.|..+.|...+.-.--+ ...|....+-++=+. + -.+.|+...||..+..-........
T Consensus 261 DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 261 DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE 340 (517)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 4679999999999999999999987765332 222333333333222 2 2478999999999877655443332
Q ss_pred ChhhHHhhH------HHHHHHHhcC
Q 020769 215 SKFEFQLRL------QEFIELVRGE 233 (321)
Q Consensus 215 s~LeF~Lr~------q~fIELir~~ 233 (321)
-.+.|.-+| .-||+|++-.
T Consensus 341 DQfDFH~Yc~RK~t~r~Y~~~L~~e 365 (517)
T PF12569_consen 341 DQFDFHSYCLRKMTLRAYVDMLRWE 365 (517)
T ss_pred ccccHHHHHHhhccHHHHHHHHHHH
Confidence 356666655 3688888854
No 48
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=39.83 E-value=2.5e+02 Score=24.28 Aligned_cols=106 Identities=11% Similarity=-0.013 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHhCCCCcccHH--HHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcC-ChhhHH
Q 020769 144 TRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIE--VFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSK-SKFEFQ 220 (321)
Q Consensus 144 ~~l~rlI~dyLlR~G~~~tA~~l~~e~~i~~~~d~e--~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~-s~LeF~ 220 (321)
.+...-+++|+++.|-.+.|.......- +..+... +=.-++-|+=+|..||+..+..++..-+.-+.+.+ .....+
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~-~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRAR-DYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHh-hhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 3455678999999998887766444321 1111122 22336678889999999999999999888777633 567778
Q ss_pred hhHHHHHHHHhcCChHHHHHHHHHhccchh
Q 020769 221 LRLQEFIELVRGENNLRAITYARKYLAPWG 250 (321)
Q Consensus 221 Lr~q~fIELir~~~~~eAi~yark~l~~~~ 250 (321)
|.+-+.+-.+..+++.+|-+..-.-.+.|.
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCcCCC
Confidence 999999999999999998887777666664
No 49
>PF01383 CpcD: CpcD/allophycocyanin linker domain; InterPro: IPR008213 Ferredoxin-NADP(+) oxydoreductase (FNR) (EC=1.18.1.2) transfers electrons from ferredoxin (or flavodoxin) to NADP(+) to generate NADPH. In eucaryotes, the nuclear-encoded, chloroplast-targeted enzyme contains two domains: an FAD-binding domain (see PDOC51384 from PROSITEDOC) and an NADP(+)-binding domain. With the exception of Gloeobacter violaceus PCC 7421, the predicted sequences of all cyanobacterial petH genes, encoding FNR, correspond to a protein containing three domains. Two domains at the C terminus correspond to the FAD- and NADP(+)-binding domains of higher plants FNR protein, which compose the catalytic domains of the enzyme. The N-terminal domain is similar to phycobilisome (PBS)-associated linker proteins from numerous cyanobacteria [, , ] and is associated with: - CpcD, the phycocyanin (PC)-associated, rod-capping, linker polypeptide of PBS. The similarity spans nearly the entire sequence of this linker class. - CpcC, the PC-associated rod linker polypeptide. The similarity is confined only to the C terminus of this linker class. - ApcC, the allophycocyanin (APC)-associated, core linker polypeptide. The similarity only correspond to about half of the molecule. The CpcD-like domain has an elongated shape and consists of a three-stranded beta-sheet, two alpha-helices, one of which has only about one turn, and the connecting random coil segments [].; GO: 0030089 phycobilisome; PDB: 1B33_O.
Probab=38.67 E-value=20 Score=25.28 Aligned_cols=23 Identities=13% Similarity=0.483 Sum_probs=18.4
Q ss_pred hhhccccccccHHHHHHHHHHHHH
Q 020769 41 LKLEHQFLRVPFEHYKKTIRTNHR 64 (321)
Q Consensus 41 l~le~~~~~vP~E~l~k~fr~~qk 64 (321)
-.-...++ ||||.|+..++.+++
T Consensus 23 Rrs~~~~~-Vpy~~ls~~~q~I~r 45 (56)
T PF01383_consen 23 RRSNQTYV-VPYSQLSQEMQRINR 45 (56)
T ss_dssp HHHEEEEE-EEHHHHHHHHHHHHH
T ss_pred EeeeEEEE-EcHHHhHHHHHHHHH
Confidence 44556666 999999999998876
No 50
>PF13934 ELYS: Nuclear pore complex assembly
Probab=38.62 E-value=3e+02 Score=24.86 Aligned_cols=91 Identities=22% Similarity=0.204 Sum_probs=46.0
Q ss_pred HHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHHHH-HHhcCChHHHH
Q 020769 161 ETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIE-LVRGENNLRAI 239 (321)
Q Consensus 161 ~tA~~l~~e~~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIE-Lir~~~~~eAi 239 (321)
+.+..|+...+|+.. |...-+-.-.|-.++++.|++.+.+- .+. +.. --+.++ |++.|+...|+
T Consensus 64 ~~~~~Fa~~f~ip~~-----~~~~~~g~W~LD~~~~~~A~~~L~~p--s~~---~~~-----~~~Il~~L~~~~~~~lAL 128 (226)
T PF13934_consen 64 ELAESFARAFGIPPK-----YIKFIQGFWLLDHGDFEEALELLSHP--SLI---PWF-----PDKILQALLRRGDPKLAL 128 (226)
T ss_pred cHHHHHHHHhCCCHH-----HHHHHHHHHHhChHhHHHHHHHhCCC--CCC---ccc-----HHHHHHHHHHCCChhHHH
Confidence 457777777777621 22222233334457777777776332 111 111 111222 44467777777
Q ss_pred HHHHHhccchhhhcHHHHHHHHhHhhccC
Q 020769 240 TYARKYLAPWGATHMKELQRVMATLAFKS 268 (321)
Q Consensus 240 ~yark~l~~~~~~~~~ei~~~m~lLaf~~ 268 (321)
.|.|.-=++.. ..+.+.-++..|+...
T Consensus 129 ~y~~~~~p~l~--s~~~~~~~~~~La~~~ 155 (226)
T PF13934_consen 129 RYLRAVGPPLS--SPEALTLYFVALANGL 155 (226)
T ss_pred HHHHhcCCCCC--CHHHHHHHHHHHHcCC
Confidence 77775444432 2355555555566544
No 51
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=38.25 E-value=82 Score=33.47 Aligned_cols=32 Identities=25% Similarity=0.514 Sum_probs=28.4
Q ss_pred hcHHHHHHHHHHHHHHhChHHHHHHHHHHhCC
Q 020769 141 WNNTRVKRILVDYMLRMSYYETAEKLAESSNI 172 (321)
Q Consensus 141 w~~~~l~rlI~dyLlR~G~~~tA~~l~~e~~i 172 (321)
.....+|+.+.+||.++||..+-..++++.++
T Consensus 19 ~~~~~~n~~v~~yl~~~~y~~te~~l~~e~~l 50 (707)
T KOG0263|consen 19 SHTRDLNRIVLEYLRKKKYSRTEEMLRQEANL 50 (707)
T ss_pred cchHHHHHHHHHHHhhhcccccchhhhhhhcc
Confidence 34578999999999999999999999999775
No 52
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.11 E-value=2.3e+02 Score=26.72 Aligned_cols=126 Identities=17% Similarity=0.227 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhChHHHHHHHHHHhCCCCcccHHHHHHHHH--HHHHH---HcCChHHHHHHHHhhhhHhhhcCChhhH
Q 020769 145 RVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKK--VIDAL---QNKEVAPALAWCSDNKSRLKKSKSKFEF 219 (321)
Q Consensus 145 ~l~rlI~dyLlR~G~~~tA~~l~~e~~i~~~~d~e~f~~~~~--I~~~L---~~gdi~~AL~W~~~n~~~L~k~~s~LeF 219 (321)
.+...++--.+..|-.+.|..-.++..- .|-.-.+ +..++ ..|+.+.|++..+.- .. +.+..|
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~-------~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~l----L~-ddpt~~ 120 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRD-------RFPGSKRVGKLKAMLLEATGNYKEAIEYYESL----LE-DDPTDT 120 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHH-------hCCCChhHHHHHHHHHHHhhchhhHHHHHHHH----hc-cCcchh
Confidence 4555555566666767777665544321 1211122 22333 368888888776432 22 236777
Q ss_pred HhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHhHhhccCCCCCCchhhhcChhcHHHHHHHHHH------
Q 020769 220 QLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLAFKSNTECTTYKALFEPKQWDFLVDQFKQ------ 293 (321)
Q Consensus 220 ~Lr~q~fIELir~~~~~eAi~yark~l~~~~~~~~~ei~~~m~lLaf~~~~~~~~y~~L~~~~rw~~L~~~F~~------ 293 (321)
-.|..+.+-+--.|+..+||+-..+++-.|. .|++.|.++++.|..
T Consensus 121 v~~KRKlAilka~GK~l~aIk~ln~YL~~F~----------------------------~D~EAW~eLaeiY~~~~~f~k 172 (289)
T KOG3060|consen 121 VIRKRKLAILKAQGKNLEAIKELNEYLDKFM----------------------------NDQEAWHELAEIYLSEGDFEK 172 (289)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc----------------------------CcHHHHHHHHHHHHhHhHHHH
Confidence 7777777777777888888777776655442 368889999987633
Q ss_pred -HHH---HHhCCCCCcchHHH
Q 020769 294 -EFC---KLYGMTLEPLLNIY 310 (321)
Q Consensus 294 -~~~---~l~gl~~~s~L~~~ 310 (321)
+|| -+.--|.+|..|..
T Consensus 173 A~fClEE~ll~~P~n~l~f~r 193 (289)
T KOG3060|consen 173 AAFCLEELLLIQPFNPLYFQR 193 (289)
T ss_pred HHHHHHHHHHcCCCcHHHHHH
Confidence 344 13344555555543
No 53
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=36.23 E-value=52 Score=20.66 Aligned_cols=18 Identities=33% Similarity=0.602 Sum_probs=14.4
Q ss_pred HHHHHHH--cCChHHHHHHH
Q 020769 186 KVIDALQ--NKEVAPALAWC 203 (321)
Q Consensus 186 ~I~~~L~--~gdi~~AL~W~ 203 (321)
..+.+|+ +||++.|++|+
T Consensus 18 ~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 18 QAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHhC
Confidence 4677774 68999999995
No 54
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=36.17 E-value=3.9e+02 Score=28.61 Aligned_cols=98 Identities=7% Similarity=-0.137 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHH-hCCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhh
Q 020769 144 TRVKRILVDYMLRMSYYETAEKLAES-SNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLR 222 (321)
Q Consensus 144 ~~l~rlI~dyLlR~G~~~tA~~l~~e-~~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr 222 (321)
...-+++++-+.+.|.+|-|..+... ..+... ....+..+..| ..+.+.+++|++||...-.. .+-...-+
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~--L~~~~~~eeA~~~~~~~l~~-----~p~~~~~~ 157 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRG--VKRQQGIEAGRAEIELYFSG-----GSSSAREI 157 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHH--HHHhccHHHHHHHHHHHhhc-----CCCCHHHH
Confidence 45668899999999999988886654 344321 12333333332 23678899999999876432 23334555
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhccch
Q 020769 223 LQEFIELVRGENNLRAITYARKYLAPW 249 (321)
Q Consensus 223 ~q~fIELir~~~~~eAi~yark~l~~~ 249 (321)
.+.-+.|..-|...+|+++.++-+.+.
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~ 184 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQH 184 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcC
Confidence 777888888999999999999888754
No 55
>PF03882 KicB: KicB killing factor; InterPro: IPR005582 This family contains MukF, which are proteins involved in chromosome condensation, segregation and cell cycle progression. MukE (IPR007385 from INTERPRO) along with MukF interact with MukB (IPR007406 from INTERPRO) in vivo forming a complex, which is required for chromosome condensation and segregation in Escherichia coli []. The Muk complex appears to be similar to the SMC-ScpA-ScpB complex in other prokaryotes where MukB is the homologue of SMC []. ScpA (IPR003768 from INTERPRO) and ScpB (IPR005234 from INTERPRO) have little sequence similarity to MukE or MukF, though they are predicted to be structurally similar, being predominantly alpha-helical with coiled coil regions. ; GO: 0005509 calcium ion binding, 0006260 DNA replication, 0007059 chromosome segregation, 0005737 cytoplasm; PDB: 1T98_B 3RPU_X 3EUH_B 3EUK_J 3EUJ_B.
Probab=36.02 E-value=4.6e+02 Score=26.21 Aligned_cols=107 Identities=14% Similarity=0.186 Sum_probs=64.7
Q ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCChHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 020769 47 FLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDS-ENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRA 125 (321)
Q Consensus 47 ~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~-~~~~~~~~~~~ld~li~kl~~lk~kl~~~~~~e~~~~~~~~~ 125 (321)
.||.....+--..--.|+.++..-..|...|+.+-.. -...-..+...|++.-..|+.|+.-+...-.+-...+.+++.
T Consensus 159 ~LkySVaeifd~Idl~QR~MDeqQ~~vk~eIA~LL~qdW~~AI~~Ce~LL~EtsgtLRELqdtL~aagd~lqa~Ll~IQe 238 (440)
T PF03882_consen 159 PLKYSVAEIFDSIDLNQRAMDEQQQSVKEEIAALLNQDWRAAIQSCEQLLDETSGTLRELQDTLEAAGDKLQAQLLRIQE 238 (440)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHchhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3455566666666778999999999999999877432 112234466667777777777777776654443333333333
Q ss_pred HH------HhccccC------cchhhhhcHHHHHHHHHHH
Q 020769 126 RL------NHLESAD------AENLAEWNNTRVKRILVDY 153 (321)
Q Consensus 126 Rl------~~L~~~~------~~~~~~w~~~~l~rlI~dy 153 (321)
-+ +++.+.- .+....|.+..++-+|+.+
T Consensus 239 ~~~~~~~l~~v~~l~~~Lq~kLDrI~sWGqq~idlWigYd 278 (440)
T PF03882_consen 239 AVMGRDELEFVDNLIFDLQMKLDRIISWGQQAIDLWIGYD 278 (440)
T ss_dssp HHHCSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1111100 2234679888898888544
No 56
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=35.93 E-value=3.7e+02 Score=28.39 Aligned_cols=60 Identities=23% Similarity=0.434 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 020769 64 RAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKC 123 (321)
Q Consensus 64 k~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lk~kl~~~~~~e~~~~~~~ 123 (321)
+..++|+..+...+.--.+..+++.++....+-..+.++.++.+++......++..+.+.
T Consensus 289 ~~F~~EL~si~p~l~~~d~~~~L~~~dln~liahah~rvdql~~~l~d~k~~~~~~~~~a 348 (657)
T KOG1854|consen 289 HQFEQELESILPGLSLADKEENLSEDDLNKLIAHAHTRVDQLQKELEDQKADEELHIKRA 348 (657)
T ss_pred HHHHHHHHHhcCCCchhhhhhhccHhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 444555555554222111122467788888888999999999999998765555544443
No 57
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=35.88 E-value=3.8e+02 Score=25.23 Aligned_cols=21 Identities=24% Similarity=0.199 Sum_probs=11.0
Q ss_pred HHHHHHHHHhChHHHHHHHHH
Q 020769 148 RILVDYMLRMSYYETAEKLAE 168 (321)
Q Consensus 148 rlI~dyLlR~G~~~tA~~l~~ 168 (321)
..++..+.+.|.++.|..+.+
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~ 131 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFL 131 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHH
Confidence 344555556666655555443
No 58
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=35.78 E-value=2e+02 Score=21.89 Aligned_cols=59 Identities=15% Similarity=0.304 Sum_probs=46.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhc---cCCCChHHHHHHHHHHHHHHHHHHHH
Q 020769 50 VPFEHYKKTIRTNHRAVEKEIT---SVISNVADVSD---SENFSKDDAVNHLTSLVSRLQGLKRK 108 (321)
Q Consensus 50 vP~E~l~k~fr~~qk~ieke~~---~v~~~~~~l~~---~~~~~~~~~~~~ld~li~kl~~lk~k 108 (321)
-|+--+-..++.++...|+|+. .|...+..+.- .+.++.++....=+.++.+++.+++-
T Consensus 7 aPvrgv~wv~e~I~~~Ae~E~~Dp~~i~~~L~~L~~~~e~GEIseeEf~~~E~eLL~rL~~~~~~ 71 (79)
T PF05120_consen 7 APVRGVVWVAEQIQEQAERELYDPAAIRRELAELQEALEAGEISEEEFERREDELLDRLEEARRR 71 (79)
T ss_pred chHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 6888888899999999999864 45555554433 46788999999999999999988763
No 59
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=35.28 E-value=2.2e+02 Score=22.29 Aligned_cols=55 Identities=18% Similarity=0.055 Sum_probs=31.5
Q ss_pred HHHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhh
Q 020769 149 ILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDN 206 (321)
Q Consensus 149 lI~dyLlR~G~~~tA~~l~~e~-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n 206 (321)
.++.-+.+.|-++.|....... .+. .-+.+.+..+..+. ...|+.+.|+.|++.-
T Consensus 56 ~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~--~~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 56 GLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL--LALGEPESALKALDLA 111 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH--HHcCCHHHHHHHHHHH
Confidence 4566666667676666544433 333 22344444444333 2568888888888654
No 60
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=31.75 E-value=4.7e+02 Score=25.03 Aligned_cols=83 Identities=22% Similarity=0.276 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHhChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHH
Q 020769 145 RVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQ 224 (321)
Q Consensus 145 ~l~rlI~dyLlR~G~~~tA~~l~~e~~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q 224 (321)
-++.. +..|+..|....|..+.++.+|++-- | -.-+|.--...|++++--.|... .+|++=|+
T Consensus 179 Sl~~T-i~~li~~~~~k~A~kl~k~Fkv~dkr----f-w~lki~aLa~~~~w~eL~~fa~s-------kKsPIGye---- 241 (319)
T PF04840_consen 179 SLNDT-IRKLIEMGQEKQAEKLKKEFKVPDKR----F-WWLKIKALAENKDWDELEKFAKS-------KKSPIGYE---- 241 (319)
T ss_pred CHHHH-HHHHHHCCCHHHHHHHHHHcCCcHHH----H-HHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChH----
Confidence 34433 45667788888999999999886321 1 23356666678888888877653 24666665
Q ss_pred HHHH-HHhcCChHHHHHHHHH
Q 020769 225 EFIE-LVRGENNLRAITYARK 244 (321)
Q Consensus 225 ~fIE-Lir~~~~~eAi~yark 244 (321)
-|++ +++.|+..+|..|..+
T Consensus 242 pFv~~~~~~~~~~eA~~yI~k 262 (319)
T PF04840_consen 242 PFVEACLKYGNKKEASKYIPK 262 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHh
Confidence 3555 3456788888888886
No 61
>PRK10780 periplasmic chaperone; Provisional
Probab=31.57 E-value=3.3e+02 Score=23.19 Aligned_cols=70 Identities=6% Similarity=0.076 Sum_probs=43.3
Q ss_pred hhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCChHHHHHHHHHHHHHHHHHHHHHH
Q 020769 41 LKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSE-NFSKDDAVNHLTSLVSRLQGLKRKLE 110 (321)
Q Consensus 41 l~le~~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~-~~~~~~~~~~ld~li~kl~~lk~kl~ 110 (321)
+..++|.++.=-..|.+.|...|..+++....+.....++.+.. .++.......-..+..+.+.++++..
T Consensus 34 il~~~p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~~~~~q~~~~ 104 (165)
T PRK10780 34 IFQQVPQRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQRQTFSQKAQ 104 (165)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666667777777777777776666666666665532 35555555555555555555555544
No 62
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=31.47 E-value=2.4e+02 Score=21.58 Aligned_cols=30 Identities=10% Similarity=0.329 Sum_probs=18.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020769 49 RVPFEHYKKTIRTNHRAVEKEITSVISNVADV 80 (321)
Q Consensus 49 ~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l 80 (321)
.+|.| ++++|..+ |.+|.........+...
T Consensus 12 ~LP~e-l~r~l~~i-relD~~~~~~~~~~~~~ 41 (105)
T PF12998_consen 12 NLPAE-LQRNLTLI-RELDAKSQDLLEELDQQ 41 (105)
T ss_dssp GHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HChHH-HHHHHHHH-HHhhhhHHHHHHHHHHH
Confidence 46766 56677666 67777766666555544
No 63
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=31.28 E-value=60 Score=26.14 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=20.5
Q ss_pred HhhHHHHHHHHhcCChHHHHHHHHHhc
Q 020769 220 QLRLQEFIELVRGENNLRAITYARKYL 246 (321)
Q Consensus 220 ~Lr~q~fIELir~~~~~eAi~yark~l 246 (321)
.+....||.+|+.|++.+|++..++..
T Consensus 39 ~~dip~~i~~i~~g~~~~A~~~i~~~n 65 (111)
T PF14691_consen 39 HIDIPEYIRLIREGNFKEAYELIREDN 65 (111)
T ss_dssp ---HHHHHHHHHCT-HHHHHHHHHHH-
T ss_pred CCcHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 456799999999999999999999654
No 64
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=30.72 E-value=1.9e+02 Score=22.67 Aligned_cols=44 Identities=9% Similarity=0.124 Sum_probs=32.3
Q ss_pred hhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020769 38 TEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVS 81 (321)
Q Consensus 38 ~~~l~le~~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~ 81 (321)
.-...+...|++.|.+.+..........++.++..+...+..+.
T Consensus 47 ~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~ 90 (105)
T cd00632 47 EVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQ 90 (105)
T ss_pred hHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677888888888888888887888777777666665543
No 65
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=30.61 E-value=3.9e+02 Score=27.27 Aligned_cols=77 Identities=21% Similarity=0.405 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhccccC-----------------cchhhhhcHHHHHHHHHHH
Q 020769 91 AVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLESAD-----------------AENLAEWNNTRVKRILVDY 153 (321)
Q Consensus 91 ~~~~ld~li~kl~~lk~kl~~~~~~e~~~~~~~~~Rl~~L~~~~-----------------~~~~~~w~~~~l~rlI~dy 153 (321)
....|.=+=++|..+++++++...++.+....++..|.+|.+.. +-....|-.-.|.+++-.-
T Consensus 138 l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkgd~K~rG~WGE~qLerILE~s 217 (475)
T PRK10361 138 LNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKGDNKTQGNWGEVVLTRVLEAS 217 (475)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCcchHHHHHHHHHHHh
Confidence 33445556688999999999998888777777777777776221 2235789888999998877
Q ss_pred HHHhCh-HHHHHHHH
Q 020769 154 MLRMSY-YETAEKLA 167 (321)
Q Consensus 154 LlR~G~-~~tA~~l~ 167 (321)
-++.|+ |++=..+.
T Consensus 218 GL~~~~~y~~Q~~~~ 232 (475)
T PRK10361 218 GLREGYEYETQVSIE 232 (475)
T ss_pred CCCcCCcceeeeecc
Confidence 778873 44333343
No 66
>PF10827 DUF2552: Protein of unknown function (DUF2552) ; InterPro: IPR020157 This entry contains proteins with no known function.
Probab=30.38 E-value=31 Score=25.69 Aligned_cols=17 Identities=18% Similarity=0.522 Sum_probs=13.8
Q ss_pred ChHHHHHHHHhhhhHhh
Q 020769 195 EVAPALAWCSDNKSRLK 211 (321)
Q Consensus 195 di~~AL~W~~~n~~~L~ 211 (321)
-++.|++|+.+|.+.+-
T Consensus 60 tld~Ai~Wi~e~M~~iT 76 (79)
T PF10827_consen 60 TLDLAIAWIGEHMPHIT 76 (79)
T ss_pred cHHHHHHHHHhcccchh
Confidence 46889999999987653
No 67
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=30.35 E-value=2.1e+02 Score=21.33 Aligned_cols=28 Identities=7% Similarity=0.152 Sum_probs=22.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHhhhhHhh
Q 020769 184 AKKVIDALQNKEVAPALAWCSDNKSRLK 211 (321)
Q Consensus 184 ~~~I~~~L~~gdi~~AL~W~~~n~~~L~ 211 (321)
+.++.+++..||+....+++..+...+.
T Consensus 3 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~ 30 (105)
T PF01399_consen 3 YSELLRAFRSGDLQEFEEFLEKHSESLF 30 (105)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 5678899999999999999999944443
No 68
>PF02609 Exonuc_VII_S: Exonuclease VII small subunit; InterPro: IPR003761 Exonuclease VII is composed of two non-identical subunits; one large subunit and 4 small ones []. This enzyme catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield nucleoside 5'-phosphates.; GO: 0008855 exodeoxyribonuclease VII activity, 0006308 DNA catabolic process, 0009318 exodeoxyribonuclease VII complex; PDB: 1VP7_F.
Probab=29.87 E-value=1.1e+02 Score=20.98 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHh
Q 020769 118 LQAQKCRARLNH 129 (321)
Q Consensus 118 ~~~~~~~~Rl~~ 129 (321)
.+++.|..+++.
T Consensus 34 ~l~~~c~~~L~~ 45 (53)
T PF02609_consen 34 ELIKKCQERLEE 45 (53)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555555543
No 69
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=29.72 E-value=3e+02 Score=22.25 Aligned_cols=34 Identities=3% Similarity=0.001 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHH
Q 020769 70 ITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQ 103 (321)
Q Consensus 70 ~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~ 103 (321)
-......|.++-+.+..+.+++...++.++++++
T Consensus 21 ~ek~~k~~~~LVkkGe~~~ee~k~~~~e~~~~~~ 54 (118)
T TIGR01837 21 QEEGSKFFNRLVKEGELAEKRGQKRFDESVDAAR 54 (118)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence 3445566667766677888888888888888877
No 70
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=29.56 E-value=7e+02 Score=26.43 Aligned_cols=207 Identities=11% Similarity=0.185 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhchHHHHHHHHH----HHH---HHhccccC------cchhhhhcH-HHHHHHHHHHHHHh--C
Q 020769 95 LTSLVSRLQGLKRKLEEGSRTEHLQAQKC----RAR---LNHLESAD------AENLAEWNN-TRVKRILVDYMLRM--S 158 (321)
Q Consensus 95 ld~li~kl~~lk~kl~~~~~~e~~~~~~~----~~R---l~~L~~~~------~~~~~~w~~-~~l~rlI~dyLlR~--G 158 (321)
...+-.-...+|+.|...++++...+.+. +.| +.++..|. ...+....+ .....+|-....+- +
T Consensus 440 ~~~L~~l~~~~k~~f~~fv~~Qi~~ie~~k~~~k~r~GVl~~i~~fp~f~~~~E~~~~~~~~~~~~r~~vd~aY~kl~~a 519 (701)
T PF09763_consen 440 SNLLQKLQVRLKRLFDKFVDEQIKSIEETKVSKKKRKGVLPFIKKFPEFVKRVESMFSGAERAREDRSLVDKAYEKLVRA 519 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCccchHHHHHHHHHHHHHHHHccccccchHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHHHHHhCCC-----------CcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhc--------------
Q 020769 159 YYETAEKLAESSNIQ-----------DLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKS-------------- 213 (321)
Q Consensus 159 ~~~tA~~l~~e~~i~-----------~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~-------------- 213 (321)
+++.-...++..+.. ...++-.+++++.+.+.|...++.+||+...+......+.
T Consensus 520 ~~~~l~~~a~~~~~~~~~~~~~dk~~~~~~v~~leN~~~~~e~l~~~~~~~~l~~~~~~A~~~~~~~~~~Y~~~~l~r~~ 599 (701)
T PF09763_consen 520 MFDSLERIAKLSPKNSGSQDPEDKEKLNYHVVLLENYHHFYEELSQLKINSVLEEFRKEAKQIYDEHLEAYVTFLLRRPF 599 (701)
T ss_pred HHHHHHHhcccCcccccccCccccccchhhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhccH
Q ss_pred CChhhHHhhHHHHHHHHhcCChHHHHHHHHHhccchhhhc-HHHHHHHHhHhh------ccCCCCCCchhhhcChhcHHH
Q 020769 214 KSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATH-MKELQRVMATLA------FKSNTECTTYKALFEPKQWDF 286 (321)
Q Consensus 214 ~s~LeF~Lr~q~fIELir~~~~~eAi~yark~l~~~~~~~-~~ei~~~m~lLa------f~~~~~~~~y~~L~~~~rw~~ 286 (321)
..-++|--.....+..+...++.-=..|.++++......+ .++|++....|- |....+......-+-+.-|..
T Consensus 600 ~kL~~F~~gve~l~~~~~~~ei~~~~~ySk~~l~kvl~~y~~kev~k~i~~l~krveKHf~~~~~~~~~~~~Ll~~vW~~ 679 (701)
T PF09763_consen 600 GKLLDFFEGVEALLQTVSPEEISYQAAYSKQELKKVLKSYPSKEVRKGIEALYKRVEKHFSRDADDPSFEEDLLQVVWSA 679 (701)
T ss_pred HHHHHHHHHHHHHHhccCchhcccchhccHHHHHHHHHhCChHHHHHHHHHHHHHHHHHcCCccccccchhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHhCC
Q 020769 287 LVDQFKQEFCKLYGM 301 (321)
Q Consensus 287 L~~~F~~~~~~l~gl 301 (321)
|-..|.+-|.+++.+
T Consensus 680 ~q~~~i~~~~~l~~l 694 (701)
T PF09763_consen 680 MQEEFIRQYERLETL 694 (701)
T ss_pred HHHHHHHHHHHHHHH
No 71
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=29.40 E-value=1.8e+02 Score=20.21 Aligned_cols=52 Identities=19% Similarity=0.062 Sum_probs=40.0
Q ss_pred HHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHHHHHHhcCChHHHHHHHHHhcc
Q 020769 191 LQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLA 247 (321)
Q Consensus 191 L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~~eAi~yark~l~ 247 (321)
+.+++++.|+++++.-- +.+ +-...++.+.-.-+.+.|+..+|+++..+.+.
T Consensus 6 ~~~~~~~~A~~~~~~~l----~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 6 LQQEDYEEALEVLERAL----ELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HhCCCHHHHHHHHHHHH----HhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 57899999999987553 222 33677777888888889999999999987663
No 72
>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]
Probab=29.15 E-value=62 Score=30.67 Aligned_cols=31 Identities=10% Similarity=0.235 Sum_probs=27.3
Q ss_pred hcHHHHHHHHHHHHHHhChHHHHHHHHHHhC
Q 020769 141 WNNTRVKRILVDYMLRMSYYETAEKLAESSN 171 (321)
Q Consensus 141 w~~~~l~rlI~dyLlR~G~~~tA~~l~~e~~ 171 (321)
-.|++|...|-+||++-|...+|+.|+.|..
T Consensus 15 qArekLa~YvYEYLlhvgaqksaqtflseir 45 (354)
T KOG4594|consen 15 QAREKLALYVYEYLLHVGAQKSAQTFLSEIR 45 (354)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence 3568899999999999999999999998754
No 73
>PF07729 FCD: FCD domain; InterPro: IPR011711 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector binding or oligomerisation domain at the C terminus. The winged-helix DNA-binding domain is well conserved in structure for the whole of the GntR family (IPR000524 from INTERPRO), and is similar in structure to other transcriptional regulator families. The C-terminal effector-binding and oligomerisation domains are more variable and are consequently used to define the subfamilies. Based on the sequence and structure of the C-terminal domains, the GtnR family can be divided into four major groups, as represented by FadR (IPR008920 from INTERPRO), HutC, MocR and YtrA, as well as some minor groups such as those represented by AraR and PlmA []. This entry represents the C-terminal ligand binding domain of many members of the GntR family. This domain probably binds to a range of effector molecules that regulate the transcription of genes through the action of the N-terminal DNA-binding domain. This domain is found in P45427 from SWISSPROT and P31460 from SWISSPROT that are regulators of sugar biosynthesis operons.; PDB: 3SXK_A 3SXY_A 3SXM_B 3SXZ_A 3FMS_A 2DI3_B 2HS5_A 3IHU_B 3C7J_A.
Probab=28.81 E-value=94 Score=23.65 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHhhh
Q 020769 179 EVFQEAKKVIDALQNKEVAPALAWCSDNK 207 (321)
Q Consensus 179 e~f~~~~~I~~~L~~gdi~~AL~W~~~n~ 207 (321)
.....-.+|.++|++||.+.|-+++..|-
T Consensus 95 ~~~~~h~~i~~ai~~~d~~~a~~~~~~h~ 123 (125)
T PF07729_consen 95 RSLEEHREIIDAIRAGDPEAAREALRQHI 123 (125)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 44566778999999999999999998874
No 74
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=28.16 E-value=2.8e+02 Score=22.35 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=29.3
Q ss_pred HHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q 020769 73 VISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEE 111 (321)
Q Consensus 73 v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lk~kl~~ 111 (321)
+...+.++-+.+.++.+++...++.+++..+.-+..+.+
T Consensus 26 ~~klvDelVkkGeln~eEak~~vddl~~q~k~~~~e~e~ 64 (108)
T COG3937 26 VQKLVDELVKKGELNAEEAKRFVDDLLRQAKEAQGELEE 64 (108)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 344445666677899999999999999998866655554
No 75
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=28.09 E-value=96 Score=24.74 Aligned_cols=33 Identities=21% Similarity=0.350 Sum_probs=27.1
Q ss_pred cccccH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020769 47 FLRVPF-EHYKKTIRTNHRAVEKEITSVISNVAD 79 (321)
Q Consensus 47 ~~~vP~-E~l~k~fr~~qk~ieke~~~v~~~~~~ 79 (321)
+-+++= |.+++..++..|.+|+....+++.+.+
T Consensus 67 l~~~~~~ee~k~~~~q~rK~~Ek~Aa~LT~~i~~ 100 (101)
T PF09943_consen 67 LERLAESEEVKKVLRQVRKDLEKNAAKLTRKIEK 100 (101)
T ss_pred hccccccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334555 899999999999999999999887765
No 76
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=27.31 E-value=3.5e+02 Score=22.16 Aligned_cols=80 Identities=13% Similarity=0.183 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC------CCChHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q 020769 52 FEHYKKTIRTNHRAVEKEITSVISNVADVSDSE------NFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRA 125 (321)
Q Consensus 52 ~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~------~~~~~~~~~~ld~li~kl~~lk~kl~~~~~~e~~~~~~~~~ 125 (321)
.+...+..+.+|...|+|+..-...+..+.... ...........+.....+...+..|..-...-..-+..++.
T Consensus 33 l~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~ 112 (132)
T PF07926_consen 33 LESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQ 112 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 345566777888888888887777776664410 01112233444555555555556665544444455666677
Q ss_pred HHHhcc
Q 020769 126 RLNHLE 131 (321)
Q Consensus 126 Rl~~L~ 131 (321)
|++-|.
T Consensus 113 r~~dL~ 118 (132)
T PF07926_consen 113 RIEDLN 118 (132)
T ss_pred HHHHHH
Confidence 766553
No 77
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=26.90 E-value=7.2e+02 Score=25.70 Aligned_cols=79 Identities=16% Similarity=0.310 Sum_probs=42.0
Q ss_pred cccHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHhhc-----hHHHHHH
Q 020769 49 RVPFEHYKKTIRTNHRAV---EKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGS-----RTEHLQA 120 (321)
Q Consensus 49 ~vP~E~l~k~fr~~qk~i---eke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lk~kl~~~~-----~~e~~~~ 120 (321)
.+||-.+...++...+.+ +++...+...+..+.+. -..|.+.++.+-..|..+||+++... .+-...+
T Consensus 371 ~~~yS~i~~~l~~~~~~l~~ie~~q~~~~~~l~~L~~d----E~~Ar~~l~~~~~~l~~ikR~lek~nLPGlp~~y~~~~ 446 (560)
T PF06160_consen 371 QVPYSEIQEELEEIEEQLEEIEEEQEEINESLQSLRKD----EKEAREKLQKLKQKLREIKRRLEKSNLPGLPEDYLDYF 446 (560)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHH
Confidence 456666666665555443 33444444444444331 33466677777777777777776643 1223344
Q ss_pred HHHHHHHHhcc
Q 020769 121 QKCRARLNHLE 131 (321)
Q Consensus 121 ~~~~~Rl~~L~ 131 (321)
......+.++.
T Consensus 447 ~~~~~~i~~l~ 457 (560)
T PF06160_consen 447 FDVSDEIEELS 457 (560)
T ss_pred HHHHHHHHHHH
Confidence 44455555554
No 78
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=26.86 E-value=5.2e+02 Score=24.84 Aligned_cols=89 Identities=12% Similarity=0.058 Sum_probs=52.7
Q ss_pred HHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHHHHH
Q 020769 151 VDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIEL 229 (321)
Q Consensus 151 ~dyLlR~G~~~tA~~l~~e~-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIEL 229 (321)
+.-+++.|.++.|..+..++ .+. .-+...+..+.. -.+..|+.+.|+..+..--. +.. . ....+....+-+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~--~~~~~g~~~eAl~~~~~Al~-l~P--~--~~~a~~~lg~~~ 80 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQ--ANIKLGNFTEAVADANKAIE-LDP--S--LAKAYLRKGTAC 80 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHH-hCc--C--CHHHHHHHHHHH
Confidence 55666777777777655543 332 233444433333 34567999999998865521 211 1 123344445556
Q ss_pred HhcCChHHHHHHHHHhcc
Q 020769 230 VRGENNLRAITYARKYLA 247 (321)
Q Consensus 230 ir~~~~~eAi~yark~l~ 247 (321)
...|++.+|+.+.++-+.
T Consensus 81 ~~lg~~~eA~~~~~~al~ 98 (356)
T PLN03088 81 MKLEEYQTAKAALEKGAS 98 (356)
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 677899999998886554
No 79
>KOG2148 consensus Exocyst protein Sec3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.68 E-value=8.2e+02 Score=26.26 Aligned_cols=30 Identities=27% Similarity=0.228 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHhhh
Q 020769 178 IEVFQEAKKVIDALQNKEVAPALAWCSDNK 207 (321)
Q Consensus 178 ~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~ 207 (321)
++-...+-+-...+.+++++|+..-....+
T Consensus 308 ieact~aA~al~q~~~~~ldp~~l~m~Avk 337 (867)
T KOG2148|consen 308 IEACTWAAKALRQLMNPNLDPIYLNMRAVK 337 (867)
T ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 455555666667778999999987765554
No 80
>PF07139 DUF1387: Protein of unknown function (DUF1387); InterPro: IPR009816 This family represents a conserved region approximately 300 residues long within a number of hypothetical proteins of unknown function that seem to be restricted to mammals.
Probab=26.61 E-value=5.7e+02 Score=24.44 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcc
Q 020769 89 DDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLE 131 (321)
Q Consensus 89 ~~~~~~ld~li~kl~~lk~kl~~~~~~e~~~~~~~~~Rl~~L~ 131 (321)
+++...|+.=-++-..|||.-+-...-.+..+..+++-|.||-
T Consensus 214 ~EAmeiL~aRqkkAeeLkrltd~A~~MsE~Ql~ELRadIK~fv 256 (302)
T PF07139_consen 214 AEAMEILDARQKKAEELKRLTDRASQMSEEQLAELRADIKHFV 256 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Confidence 4455666666666666666666655555555555666666654
No 81
>PF07303 Occludin_ELL: Occludin homology domain; InterPro: IPR010844 This represents a conserved region approximately 100 residues long within eukaryotic occludin proteins and the RNA polymerase II elongation factor ELL. Occludin is an integral membrane protein that localises to tight junctions [], while ELL is an elongation factor that can increase the catalytic rate of RNA polymerase II transcription by suppressing transient pausing by polymerase at multiple sites along the DNA []. This shared domain is thought to mediate protein interactions [].; PDB: 1WPA_A 3G7C_A 1XAW_A.
Probab=26.38 E-value=3.3e+02 Score=21.53 Aligned_cols=66 Identities=9% Similarity=0.233 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHhhccC---CCChHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcc
Q 020769 64 RAVEKEITSVISNVADVSDSE---NFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLE 131 (321)
Q Consensus 64 k~ieke~~~v~~~~~~l~~~~---~~~~~~~~~~ld~li~kl~~lk~kl~~~~~~e~~~~~~~~~Rl~~L~ 131 (321)
+.+-.++..|...|.+|.... +.+..+. ..+..|+..-+.+| +-.....++..-+.-++..|.||+
T Consensus 25 k~L~~~v~~v~~~f~~L~~~l~~l~~~s~ey-~~i~~I~~eY~k~K-k~~p~y~~~K~Rc~yL~~KL~HIK 93 (101)
T PF07303_consen 25 KELHAEVDAVSRRFQELDSELKRLPPGSQEY-KRIAQILQEYNKKK-KRDPNYQEKKKRCEYLHNKLSHIK 93 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS-TTSHHH-HHHH---HHHHHHH-HTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCcHH-HHHHHHHHHHHHHH-hcCccHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777775421 1122222 22225566666555 222333344444555555566665
No 82
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=26.36 E-value=2e+02 Score=21.99 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=33.4
Q ss_pred hhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 020769 39 EALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADV 80 (321)
Q Consensus 39 ~~l~le~~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l 80 (321)
-...+...|++.|.+.+......-.+.++.++..+...+..+
T Consensus 47 ~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l 88 (106)
T PF01920_consen 47 VYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYL 88 (106)
T ss_dssp EEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345577889999999999998888888888888877666544
No 83
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=26.14 E-value=4.5e+02 Score=24.85 Aligned_cols=68 Identities=21% Similarity=0.420 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhchHHHH----------HHHHHHHHHHhccccCcchhhhhcH--HHHHHHHHHHHHHhCh
Q 020769 92 VNHLTSLVSRLQGLKRKLEEGSRTEHL----------QAQKCRARLNHLESADAENLAEWNN--TRVKRILVDYMLRMSY 159 (321)
Q Consensus 92 ~~~ld~li~kl~~lk~kl~~~~~~e~~----------~~~~~~~Rl~~L~~~~~~~~~~w~~--~~l~rlI~dyLlR~G~ 159 (321)
...+..+..+++..+.+|.+...+|.. -+.+.++|+..|+++-+.-..++.+ .+|..+---||+|.-.
T Consensus 111 k~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~LqsiRP~~MdEyE~~EeeLqkly~~Y~l~f~n 190 (338)
T KOG3647|consen 111 KSAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQSIRPAHMDEYEDCEEELQKLYQRYFLRFHN 190 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345677778888999999887766643 3556677788888776554444432 5666666666666543
No 84
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.11 E-value=4.8e+02 Score=26.73 Aligned_cols=12 Identities=25% Similarity=0.564 Sum_probs=7.4
Q ss_pred cccHHHHHHHHH
Q 020769 49 RVPFEHYKKTIR 60 (321)
Q Consensus 49 ~vP~E~l~k~fr 60 (321)
-|=||-|+++.|
T Consensus 333 vvGF~dL~~R~K 344 (508)
T KOG3091|consen 333 VVGFEDLRQRLK 344 (508)
T ss_pred ccchHHHHHHHH
Confidence 344777777754
No 85
>PRK11186 carboxy-terminal protease; Provisional
Probab=25.76 E-value=7.6e+02 Score=26.36 Aligned_cols=68 Identities=13% Similarity=0.213 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHhChHH------HH----HHHHHHhCCCC----cccHHHHHH-HHHHHHHHHcCChHHHHHHHHhhh
Q 020769 143 NTRVKRILVDYMLRMSYYE------TA----EKLAESSNIQD----LVDIEVFQE-AKKVIDALQNKEVAPALAWCSDNK 207 (321)
Q Consensus 143 ~~~l~rlI~dyLlR~G~~~------tA----~~l~~e~~i~~----~~d~e~f~~-~~~I~~~L~~gdi~~AL~W~~~n~ 207 (321)
...+-+.|+.+|.|+-|.. .. +.+.+...-.. ..|++.|.. ..++-+.|++||+++|.+.++-..
T Consensus 39 ~~~~~~~v~~~l~~~Hy~~~~~dd~~s~~v~~~yl~~LD~~k~~fl~sDi~~f~~~~~~ldd~~~~g~l~~~~~i~~~~~ 118 (667)
T PRK11186 39 HATASKRVTSRFTRSHYRQFDLDDAFSAKIFDRYLNLLDYSHNVLLASDIDQFAKYKTQLDDELKSGKLDVAYDLYNLAQ 118 (667)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHhhCCCcceecHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 3555666777777666521 11 12222222211 246777866 557778899999999999988765
Q ss_pred hHh
Q 020769 208 SRL 210 (321)
Q Consensus 208 ~~L 210 (321)
.++
T Consensus 119 ~r~ 121 (667)
T PRK11186 119 KRR 121 (667)
T ss_pred HHH
Confidence 443
No 86
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=25.64 E-value=3.6e+02 Score=21.82 Aligned_cols=92 Identities=13% Similarity=-0.039 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHH
Q 020769 147 KRILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQE 225 (321)
Q Consensus 147 ~rlI~dyLlR~G~~~tA~~l~~e~-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~ 225 (321)
.-.++..++..|.++-|....+.. .-.....+..+..++--.-.+..|+.+.|+..+.... ............
T Consensus 51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~------~~~~~~~~~~~~ 124 (145)
T PF09976_consen 51 ALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIP------DEAFKALAAELL 124 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcc------CcchHHHHHHHH
Confidence 445788889999988887755542 2111122344455554555568999999999996632 122333333444
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 020769 226 FIELVRGENNLRAITYARK 244 (321)
Q Consensus 226 fIELir~~~~~eAi~yark 244 (321)
=--+++.|+..+|+..-++
T Consensus 125 Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 125 GDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 4456778999999887664
No 87
>PF14282 FlxA: FlxA-like protein
Probab=25.61 E-value=3.4e+02 Score=21.48 Aligned_cols=50 Identities=12% Similarity=0.325 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHhhc
Q 020769 64 RAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGS 113 (321)
Q Consensus 64 k~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lk~kl~~~~ 113 (321)
+.|.+.+..+...+.++....+++.+.....+..|-..+..|...|....
T Consensus 22 ~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq 71 (106)
T PF14282_consen 22 EQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQ 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677777777777764467778888888888888888888886643
No 88
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=25.50 E-value=5.2e+02 Score=25.97 Aligned_cols=64 Identities=8% Similarity=0.261 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHH-HHhhchHHHHHHHHHHHHHH
Q 020769 58 TIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRK-LEEGSRTEHLQAQKCRARLN 128 (321)
Q Consensus 58 ~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lk~k-l~~~~~~e~~~~~~~~~Rl~ 128 (321)
.+..--..+.+|+..+-..-..- ..+....+..+.++++.+|.- +..+......++..++++++
T Consensus 152 ~~~~el~~lrrdLavlRQ~~~~~-------~~~~~~sm~~i~~k~~~~k~~~~~~~~~s~R~y~e~~k~kL~ 216 (426)
T smart00806 152 EQRAELKSLQRELAVLRQTHNSF-------FTEIKESIKDILEKIDKFKSSSLSASGSSNRAYVESSKKKLS 216 (426)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHhHHHHH
Confidence 34455566666666544433322 234667788888888888874 33333444566777777654
No 89
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=25.49 E-value=1.3e+02 Score=21.79 Aligned_cols=32 Identities=19% Similarity=0.365 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHhCCCC
Q 020769 143 NTRVKRILVDYMLRMSYYETAEKLAESSNIQD 174 (321)
Q Consensus 143 ~~~l~rlI~dyLlR~G~~~tA~~l~~e~~i~~ 174 (321)
+.++=..|.+|..++||.-|...+++..|+..
T Consensus 8 Q~~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~S 39 (65)
T PF01726_consen 8 QKEVLEFIREYIEENGYPPTVREIAEALGLKS 39 (65)
T ss_dssp HHHHHHHHHHHHHHHSS---HHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCC
Confidence 45666799999999999999999999999974
No 90
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=25.35 E-value=2.3e+02 Score=28.47 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=0.0
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 020769 44 EHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSD 82 (321)
Q Consensus 44 e~~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~ 82 (321)
|-..+|-=.-.||.-+...++.+...+..+...+..++.
T Consensus 152 Ev~~LRreLavLRQl~~~~~~~~~~~i~~i~~ki~~~k~ 190 (424)
T PF03915_consen 152 EVQSLRRELAVLRQLYSEFQSEVKESISSIREKIKKVKS 190 (424)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444446666666666666666666666655433
No 91
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=25.26 E-value=2.2e+02 Score=19.07 Aligned_cols=88 Identities=9% Similarity=0.026 Sum_probs=42.7
Q ss_pred HHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHHHH
Q 020769 150 LVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIE 228 (321)
Q Consensus 150 I~dyLlR~G~~~tA~~l~~e~-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIE 228 (321)
++..+.+.|.++-|..+.++. .+.+ .+...+..+..+ ....|+.+.|+++++.-...... .. ......-.-
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~~~~ 77 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAA--YYKLGKYEEALEDYEKALELDPD-NA----KAYYNLGLA 77 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhCCCc-ch----hHHHHHHHH
Confidence 455556677666666655543 3322 122222222222 23458888888888654322111 11 222222223
Q ss_pred HHhcCChHHHHHHHHHh
Q 020769 229 LVRGENNLRAITYARKY 245 (321)
Q Consensus 229 Lir~~~~~eAi~yark~ 245 (321)
+...|+..+|+.+.++.
T Consensus 78 ~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 78 YYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHhHHHHHHHHHHH
Confidence 34456677777776643
No 92
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.22 E-value=5.7e+02 Score=23.97 Aligned_cols=47 Identities=13% Similarity=0.371 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q 020769 61 TNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEE 111 (321)
Q Consensus 61 ~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lk~kl~~ 111 (321)
..++.++.|++.+...+.++... .++..+.++.+=..+..++.++..
T Consensus 45 ~~~~~~q~ei~~L~~qi~~~~~k----~~~~~~~i~~~~~eik~l~~eI~~ 91 (265)
T COG3883 45 KEKKNIQNEIESLDNQIEEIQSK----IDELQKEIDQSKAEIKKLQKEIAE 91 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555332 223444444444555555555544
No 93
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=24.89 E-value=2.1e+02 Score=21.43 Aligned_cols=17 Identities=29% Similarity=0.282 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHhcc
Q 020769 115 TEHLQAQKCRARLNHLE 131 (321)
Q Consensus 115 ~e~~~~~~~~~Rl~~L~ 131 (321)
+-......|+.+|..|.
T Consensus 53 ~i~~~~~~~~~~lk~l~ 69 (103)
T PF00804_consen 53 EIKQLFQKIKKRLKQLS 69 (103)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33345666666666665
No 94
>PF10834 DUF2560: Protein of unknown function (DUF2560); InterPro: IPR022544 This entry is represented by Bacteriophage P22, Orf80. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=24.81 E-value=1.2e+02 Score=23.02 Aligned_cols=43 Identities=16% Similarity=0.318 Sum_probs=28.8
Q ss_pred HHHHHHHHhhhhHhhhcCChhhHHhhHHHHHHHHhcC----ChHHHHHHHHHhccc
Q 020769 197 APALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGE----NNLRAITYARKYLAP 248 (321)
Q Consensus 197 ~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~----~~~eAi~yark~l~~ 248 (321)
..||+|+. ++.|-|+|..++|-.---++ +..+||+-+++-+.-
T Consensus 29 ~~Ai~FV~---------d~~LK~ElF~~q~~~~~~e~~~vart~KAIq~~kEAL~L 75 (80)
T PF10834_consen 29 KEAIAFVA---------DSELKYELFKDQYNRVGAESTVVARTIKAIQESKEALDL 75 (80)
T ss_pred HHHHHHHc---------CcHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHH
Confidence 45788876 46788999999998764443 345666666654443
No 95
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=24.68 E-value=1e+02 Score=19.14 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=14.8
Q ss_pred HHHHHH--HcCChHHHHHHHH
Q 020769 186 KVIDAL--QNKEVAPALAWCS 204 (321)
Q Consensus 186 ~I~~~L--~~gdi~~AL~W~~ 204 (321)
+++.+| .+||++.|+.|+-
T Consensus 17 ~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 17 EARKALRATNNNVERAVEWLL 37 (38)
T ss_pred HHHHHHHHhCCCHHHHHHHHh
Confidence 466776 4799999999974
No 96
>PHA00780 hypothetical protein
Probab=24.61 E-value=1.2e+02 Score=23.01 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=27.0
Q ss_pred HHHHHHHHhhhhHhhhcCChhhHHhhHHHHHHHHhcC----ChHHHHHHHHHhc
Q 020769 197 APALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGE----NNLRAITYARKYL 246 (321)
Q Consensus 197 ~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~----~~~eAi~yark~l 246 (321)
..||+|+. +|.|-|+|..++|-.---++ +..+||+-+++-+
T Consensus 29 k~AI~FV~---------d~~Lk~ElF~~q~~~~~~E~~~vart~kAIq~akEAL 73 (80)
T PHA00780 29 EEAFQFIG---------TDELKLELFKIHFQSGGANSDITTRTIEAVRKSKEAL 73 (80)
T ss_pred HHHHHHhc---------chHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHH
Confidence 46788876 46788999999987754443 3455665555444
No 97
>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C.
Probab=24.52 E-value=68 Score=30.05 Aligned_cols=24 Identities=21% Similarity=0.102 Sum_probs=19.7
Q ss_pred HHHHHHHcCChHHHHHHHHhhhhH
Q 020769 186 KVIDALQNKEVAPALAWCSDNKSR 209 (321)
Q Consensus 186 ~I~~~L~~gdi~~AL~W~~~n~~~ 209 (321)
+|.+.|..||.+.|+++|-+++-.
T Consensus 1 ~I~~~Ll~G~~~~Av~~al~~~~w 24 (284)
T PF12931_consen 1 KIQQLLLVGNREEAVELALDNGLW 24 (284)
T ss_dssp HHHHHHHTT-HHHHHHHHHHTT-H
T ss_pred CHHHHHhCCCHHHHHHHHHHCCCh
Confidence 688999999999999999888763
No 98
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=24.45 E-value=2.3e+02 Score=19.17 Aligned_cols=55 Identities=20% Similarity=0.180 Sum_probs=31.7
Q ss_pred HHHHHHHhChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhh
Q 020769 150 LVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDN 206 (321)
Q Consensus 150 I~dyLlR~G~~~tA~~l~~e~~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n 206 (321)
.+..++..|-++.|....++.=-...-+.+....+..|.. ..|+.+.|++|+.+-
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~--~~g~~~~A~~~~~~a 57 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY--QQGRYDEALAYYERA 57 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH--HTT-HHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH--HcCCHHHHHHHHHHH
Confidence 3566777887877777665542222333444444444433 678888888877643
No 99
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=24.16 E-value=6.6e+02 Score=24.28 Aligned_cols=112 Identities=13% Similarity=0.262 Sum_probs=49.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhccccC-cchhhhhcHHHHHHHHHHHHHHhChHHHHH
Q 020769 86 FSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLESAD-AENLAEWNNTRVKRILVDYMLRMSYYETAE 164 (321)
Q Consensus 86 ~~~~~~~~~ld~li~kl~~lk~kl~~~~~~e~~~~~~~~~Rl~~L~~~~-~~~~~~w~~~~l~rlI~dyLlR~G~~~tA~ 164 (321)
-++.+.++.+.+.+.++. ........+....+.+.+..++.+- .+...+|....+..+. .=+++.|...
T Consensus 10 KtP~ElVr~l~e~L~~L~------~~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa-~Ei~~~dll~--- 79 (335)
T PF08569_consen 10 KTPAELVRSLREALEKLD------SKSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLA-QEIYRSDLLY--- 79 (335)
T ss_dssp --HHHHHHHHHHHHHHHH------SS-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHH-HHHHHHTHHH---
T ss_pred CCHHHHHHHHHHHHHHhc------cccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHH-HHHHHhCHHH---
Confidence 456677777777777763 1111222233444444444444321 2223456666655443 3344554332
Q ss_pred HHHHHhCCCCcccHHHHHHHHHHHHHHHcCCh----HHHHHHHHhhhhHh
Q 020769 165 KLAESSNIQDLVDIEVFQEAKKVIDALQNKEV----APALAWCSDNKSRL 210 (321)
Q Consensus 165 ~l~~e~~i~~~~d~e~f~~~~~I~~~L~~gdi----~~AL~W~~~n~~~L 210 (321)
.|+. .+. ..|.|.=.....|...+.++++ .|+.+|+..|+|.+
T Consensus 80 ~Li~--~L~-~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~pei 126 (335)
T PF08569_consen 80 LLIR--NLP-KLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEI 126 (335)
T ss_dssp HHHH--TGG-GS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THH
T ss_pred HHHH--Hhh-hCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHH
Confidence 2332 222 2345555556666666654332 26888888886654
No 100
>PF14276 DUF4363: Domain of unknown function (DUF4363)
Probab=24.10 E-value=1.6e+02 Score=23.49 Aligned_cols=49 Identities=14% Similarity=0.248 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHHHH
Q 020769 180 VFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIE 228 (321)
Q Consensus 180 ~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIE 228 (321)
.-..+..|.+++.++|++.|-.-+.+-.....+....+.|-+..+++=.
T Consensus 28 i~~~l~~i~~~i~~~dW~~A~~~~~~l~~~W~k~~~~~~~~~~h~eid~ 76 (121)
T PF14276_consen 28 IEEQLEQIEEAIENEDWEKAYKETEELEKEWDKNKKRWSILIEHQEIDN 76 (121)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhchheeeeecHHHHHH
Confidence 3456778999999999999999999999888888888888888888754
No 101
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=23.96 E-value=6.2e+02 Score=26.07 Aligned_cols=95 Identities=12% Similarity=0.108 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhChHHHHHHHHHHhCCCC-cccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHH
Q 020769 146 VKRILVDYMLRMSYYETAEKLAESSNIQD-LVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQ 224 (321)
Q Consensus 146 l~rlI~dyLlR~G~~~tA~~l~~e~~i~~-~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q 224 (321)
+.-+++.|.-+.|.++.|-.+..+. |+. +.-+|.|....+|.. ..||+..|.+|.++-+.- ...+-- |-.-
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~a-I~htPt~~ely~~KarilK--h~G~~~~Aa~~~~~Ar~L-D~~DRy----iNsK 267 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKA-IEHTPTLVELYMTKARILK--HAGDLKEAAEAMDEAREL-DLADRY----INSK 267 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHH-HhcCCCcHHHHHHHHHHHH--HCCCHHHHHHHHHHHHhC-ChhhHH----HHHH
Confidence 5567899999999999988888653 321 233566666666654 589999999999877642 111100 0111
Q ss_pred HHHHHHhcCChHHHHHHHHHhccc
Q 020769 225 EFIELVRGENNLRAITYARKYLAP 248 (321)
Q Consensus 225 ~fIELir~~~~~eAi~yark~l~~ 248 (321)
-.--++|.|++.+|.+-+..+..+
T Consensus 268 ~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 268 CAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhcCC
Confidence 111267888888888877654443
No 102
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=23.37 E-value=2e+02 Score=22.62 Aligned_cols=47 Identities=13% Similarity=0.253 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHH
Q 020769 58 TIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLK 106 (321)
Q Consensus 58 ~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lk 106 (321)
.||+.-+.|..++..+...+..+.+.. ..+.....+..+|..|+...
T Consensus 37 ~y~~~~~~iT~~f~~~S~ei~~ie~~L--~~~~~~~~la~~i~~lQ~~E 83 (97)
T PF14966_consen 37 AYRQLCHEITQEFSAISKEILAIEAEL--RDEHERPDLAELIRELQEQE 83 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh--ccccCCHHHHHHHHHHHHHH
Confidence 477777778888888888887776531 11112344556666666543
No 103
>PF05508 Ran-binding: RanGTP-binding protein; InterPro: IPR008812 The small Ras-like GTPase Ran plays an essential role in the transport of macromolecules in and out of the nucleus and has been implicated in spindle and nuclear envelope formation during mitosis in higher eukaryotes. The Saccharomyces cerevisiae ORF YGL164c encoding a novel RanGTP-binding protein, termed Yrb30p was identified. The protein competes with S. cerevisiae RanBP1 (Yrb1p) for binding to the GTP-bound form of S. cerevisiae Ran (Gsp1p) and is, like Yrb1p, able to form trimeric complexes with RanGTP and some of the karyopherins [].
Probab=22.84 E-value=6.3e+02 Score=24.16 Aligned_cols=65 Identities=20% Similarity=0.312 Sum_probs=50.0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hccCCCChHHHHHHHHHHHHHHHHHHHHHHhhch
Q 020769 49 RVPFEHYKKTIRTNHRAVEKEITSVISNVADV---SDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGSR 114 (321)
Q Consensus 49 ~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l---~~~~~~~~~~~~~~ld~li~kl~~lk~kl~~~~~ 114 (321)
+||=+.. +..+..|+.+|.-+..|..+|.-+ ...|+.+-+.++...+.|-.-++.+-+++++...
T Consensus 38 ~ip~~~~-~~l~~lq~~L~~kI~IvspAIDLIel~aaRGNt~Lesal~L~~~L~~eI~~f~~~l~~~~~ 105 (302)
T PF05508_consen 38 KIPDKDR-KELEKLQRRLESKIKIVSPAIDLIELIAARGNTSLESALPLTKDLRREIDSFDERLEEAAE 105 (302)
T ss_pred hCCHHHH-HHHHHHHHHHHhhhhccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777776 888999999999999988888744 2245677777888888888888877777776654
No 104
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=22.81 E-value=6.7e+02 Score=23.92 Aligned_cols=82 Identities=16% Similarity=0.170 Sum_probs=58.9
Q ss_pred cHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHh
Q 020769 142 NNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQL 221 (321)
Q Consensus 142 ~~~~l~rlI~dyLlR~G~~~tA~~l~~e~~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~L 221 (321)
...+.-++.+.-|...|.++--..|+++. ..++-+++|. ...+..|+...|..++..... ....++
T Consensus 206 ~dkrfw~lki~aLa~~~~w~eL~~fa~sk--KsPIGyepFv-----~~~~~~~~~~eA~~yI~k~~~-----~~rv~~-- 271 (319)
T PF04840_consen 206 PDKRFWWLKIKALAENKDWDELEKFAKSK--KSPIGYEPFV-----EACLKYGNKKEASKYIPKIPD-----EERVEM-- 271 (319)
T ss_pred cHHHHHHHHHHHHHhcCCHHHHHHHHhCC--CCCCChHHHH-----HHHHHCCCHHHHHHHHHhCCh-----HHHHHH--
Confidence 35778889999999999999999999863 3457788874 345688999999999987432 112222
Q ss_pred hHHHHHHHHhcCChHHHHHHHHH
Q 020769 222 RLQEFIELVRGENNLRAITYARK 244 (321)
Q Consensus 222 r~q~fIELir~~~~~eAi~yark 244 (321)
+++.|+..+|++-|.+
T Consensus 272 -------y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 272 -------YLKCGDYKEAAQEAFK 287 (319)
T ss_pred -------HHHCCCHHHHHHHHHH
Confidence 2556777777777664
No 105
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=22.77 E-value=7.8e+02 Score=24.64 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=27.1
Q ss_pred ccccccccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhc
Q 020769 44 EHQFLRVPFEHYKKTIRTNHRAVEK-EITSVISNVADVSD 82 (321)
Q Consensus 44 e~~~~~vP~E~l~k~fr~~qk~iek-e~~~v~~~~~~l~~ 82 (321)
+.|.--..+..=-|+=|..|+.||| --.+|...|.+|.+
T Consensus 218 t~~~~~~~~~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~ 257 (411)
T KOG1318|consen 218 THPKTDATALERDRRKRDNHNEVERRRRENINDRIKELGQ 257 (411)
T ss_pred CCCCcccchhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3443344455555666899999998 45778888888866
No 106
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=22.27 E-value=4.8e+02 Score=26.06 Aligned_cols=31 Identities=32% Similarity=0.351 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHH
Q 020769 93 NHLTSLVSRLQGLKRKLEEGSRTEHLQAQKC 123 (321)
Q Consensus 93 ~~ld~li~kl~~lk~kl~~~~~~e~~~~~~~ 123 (321)
+.|..+..|++.+|..+++.-++++.....|
T Consensus 227 ~~Lt~l~~rvqkvRDeLe~LLddd~Dma~mY 257 (414)
T KOG2662|consen 227 KRLTELTSRVQKVRDELEELLDDDDDMAEMY 257 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 3344445555555555555555555544444
No 107
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=21.98 E-value=2.8e+02 Score=27.88 Aligned_cols=74 Identities=18% Similarity=0.063 Sum_probs=50.7
Q ss_pred HHHHHHHHHHhChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHH
Q 020769 147 KRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEF 226 (321)
Q Consensus 147 ~rlI~dyLlR~G~~~tA~~l~~e~~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~f 226 (321)
-.-|+.||-..||.+.|-.|+++. ..+..=+|.-|+++.|++-+.+-... ....|=.
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~-------------~~rFeLAl~lg~L~~A~~~a~~~~~~----------~~W~~Lg 354 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDP-------------DHRFELALQLGNLDIALEIAKELDDP----------EKWKQLG 354 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-H-------------HHHHHHHHHCT-HHHHHHHCCCCSTH----------HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCCh-------------HHHhHHHHhcCCHHHHHHHHHhcCcH----------HHHHHHH
Confidence 556889999999999999886431 23566788999999999988665321 1333444
Q ss_pred HHHHhcCChHHHHHHHH
Q 020769 227 IELVRGENNLRAITYAR 243 (321)
Q Consensus 227 IELir~~~~~eAi~yar 243 (321)
-+-++.|+..-|-++.+
T Consensus 355 ~~AL~~g~~~lAe~c~~ 371 (443)
T PF04053_consen 355 DEALRQGNIELAEECYQ 371 (443)
T ss_dssp HHHHHTTBHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 45667788888877776
No 108
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=21.92 E-value=70 Score=26.25 Aligned_cols=30 Identities=20% Similarity=0.399 Sum_probs=0.0
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 020769 46 QFLRVPFEHYKKTIRTNHRAVEKEITSVIS 75 (321)
Q Consensus 46 ~~~~vP~E~l~k~fr~~qk~ieke~~~v~~ 75 (321)
..=.+|.|.|++-.+...+.++.++-.+++
T Consensus 22 ~~~~~~Le~L~~dL~~~~~~L~~~Li~lIN 51 (133)
T PF06148_consen 22 NRRYVSLEDLRKDLRSYSKELKNELIELIN 51 (133)
T ss_dssp ------------------------------
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455799999999999999999999876654
No 109
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=21.83 E-value=1.2e+02 Score=18.67 Aligned_cols=18 Identities=28% Similarity=0.385 Sum_probs=13.8
Q ss_pred HHHHHH--HcCChHHHHHHH
Q 020769 186 KVIDAL--QNKEVAPALAWC 203 (321)
Q Consensus 186 ~I~~~L--~~gdi~~AL~W~ 203 (321)
+++.+| .+||++.|++|+
T Consensus 17 ~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 17 EALKALRAANGNVERAAEYL 36 (37)
T ss_pred HHHHHHHHhCCCHHHHHHHH
Confidence 466666 378999999996
No 110
>PRK05260 condesin subunit F; Provisional
Probab=21.46 E-value=8.4e+02 Score=24.50 Aligned_cols=120 Identities=12% Similarity=0.165 Sum_probs=69.9
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCChHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 020769 46 QFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSE-NFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCR 124 (321)
Q Consensus 46 ~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~-~~~~~~~~~~ld~li~kl~~lk~kl~~~~~~e~~~~~~~~ 124 (321)
..||.....+--..--.|+.++-.-..|...|+++-... ...-..+...|+++-..|+.|+.-+....++-...+.+++
T Consensus 158 a~LkySVaeifd~Idl~QR~mDeqQ~~vk~eIA~LL~qdW~~AI~~Ce~LLdEtsgtLRELqdtL~aagD~lqaqLl~IQ 237 (440)
T PRK05260 158 APLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRIQ 237 (440)
T ss_pred hcCcCcHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345666666666677788999999999998888774320 0112335566777777777777777665433332222222
Q ss_pred HH------HHhccccC------cchhhhhcHHHHHHHHHHHHHHhChHHHHHH
Q 020769 125 AR------LNHLESAD------AENLAEWNNTRVKRILVDYMLRMSYYETAEK 165 (321)
Q Consensus 125 ~R------l~~L~~~~------~~~~~~w~~~~l~rlI~dyLlR~G~~~tA~~ 165 (321)
.- ++++.+.- .+....|.+..++-+|+.+=.-+-|.-+|..
T Consensus 238 ~~~~~~~~l~~vd~~~~~Lq~kLDRI~sWGqqaidlWigYdrhVHkfIRtaId 290 (440)
T PRK05260 238 DATMGRDDLDFVDRLVFDLQSKLDRIISWGQQAIDLWIGYDRHVHKFIRTAID 290 (440)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 21 22222110 2344679999999888665444445555443
No 111
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=21.46 E-value=4.6e+02 Score=21.51 Aligned_cols=101 Identities=14% Similarity=0.149 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHhhcc-----CCCChHHHHHHHHHHHHHHHHHHHHHHhhchHHHHH--HHHHHHHHHhccccCcchhh
Q 020769 67 EKEITSVISNVADVSDS-----ENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQ--AQKCRARLNHLESADAENLA 139 (321)
Q Consensus 67 eke~~~v~~~~~~l~~~-----~~~~~~~~~~~ld~li~kl~~lk~kl~~~~~~e~~~--~~~~~~Rl~~L~~~~~~~~~ 139 (321)
|..+..++..+.++... ++.+.+....+++.+++.|+.+.+-......-.... ..--..=++++.+.- +=+
T Consensus 2 e~~l~~~i~~l~el~~~v~d~~~~~s~~~L~~ki~~lv~~L~~l~~~~~~~~~~~~~~~~~~IP~evl~yID~Gr--NPD 79 (128)
T PF09748_consen 2 EQQLEDVIQSLYELGVIVSDFQGPPSQEALNQKINQLVTSLQELDKLAQQTNDPDSPLQDIQIPLEVLEYIDDGR--NPD 79 (128)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccccCCCCHHHHHHHhCCC--Cch
Confidence 55666667766666441 135677778888888888887776655521100000 000011133333221 125
Q ss_pred hhcHHHHHHHHHHHHHHhChHHHHHHHHHH
Q 020769 140 EWNNTRVKRILVDYMLRMSYYETAEKLAES 169 (321)
Q Consensus 140 ~w~~~~l~rlI~dyLlR~G~~~tA~~l~~e 169 (321)
.|.+..+.+.....=.-.|-.++-+.|...
T Consensus 80 iyTre~vE~~~~~Nq~~kGK~~a~~~fr~~ 109 (128)
T PF09748_consen 80 IYTREFVELVRRENQYVKGKMEAFKSFRDV 109 (128)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 688888998888888888877776665543
No 112
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=21.44 E-value=6e+02 Score=22.79 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 020769 61 TNHRAVEKEITSVISNVADVSD 82 (321)
Q Consensus 61 ~~qk~ieke~~~v~~~~~~l~~ 82 (321)
..+-.+++-.......+..+.+
T Consensus 104 ~~~~~~~k~~k~~~~~~~~l~K 125 (236)
T cd07651 104 KIQSHMEKLLKKKQDQEKYLEK 125 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333335555555555554433
No 113
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=21.41 E-value=5.6e+02 Score=22.43 Aligned_cols=26 Identities=15% Similarity=0.354 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020769 52 FEHYKKTIRTNHRAVEKEITSVISNV 77 (321)
Q Consensus 52 ~E~l~k~fr~~qk~ieke~~~v~~~~ 77 (321)
|..|...-...++.++.|++.+...+
T Consensus 111 f~rL~~~Vd~~~~eL~~eI~~L~~~i 136 (171)
T PF04799_consen 111 FARLCQQVDQTKNELEDEIKQLEKEI 136 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444433
No 114
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=21.40 E-value=5.7e+02 Score=22.53 Aligned_cols=34 Identities=26% Similarity=0.453 Sum_probs=22.2
Q ss_pred hhhcH-HHHHHHHHHHHHHhChHHHHHHHHHHhCCC
Q 020769 139 AEWNN-TRVKRILVDYMLRMSYYETAEKLAESSNIQ 173 (321)
Q Consensus 139 ~~w~~-~~l~rlI~dyLlR~G~~~tA~~l~~e~~i~ 173 (321)
..|.. .|+-+-|.|-++ .|+...-..|-++.||+
T Consensus 166 ~~wrk~krmf~ei~d~~~-e~~pk~ksel~eelGIE 200 (201)
T KOG4603|consen 166 KEWRKRKRMFREIIDKLL-EGLPKKKSELYEELGIE 200 (201)
T ss_pred HHHHHHHHHHHHHHHHHH-cCCcchHHHHHHHhCcC
Confidence 46753 567777777665 45555566677777775
No 115
>PLN02372 violaxanthin de-epoxidase
Probab=21.28 E-value=8.1e+02 Score=24.63 Aligned_cols=74 Identities=14% Similarity=0.211 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHH--HHHHHHHHHHHHHhhc----hHHHHHHHHHHH
Q 020769 52 FEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTS--LVSRLQGLKRKLEEGS----RTEHLQAQKCRA 125 (321)
Q Consensus 52 ~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~--li~kl~~lk~kl~~~~----~~e~~~~~~~~~ 125 (321)
.|.|-|.-....|.|.||+..+...+.+-... + .......++. +-+.+..++....... ++|...++.++.
T Consensus 363 ~~~l~~~~e~~e~~i~~e~~~~~~e~~~~v~~--~-~~~~~~~~~~~~~~~~~~~l~~~~~~f~~~lskee~~~l~~~~~ 439 (455)
T PLN02372 363 LERLEKDVEEGEKTIVKEARQIEEELEKEVEK--L-GKEEESLFKRVALEEGLKELEQDEENFLKELSKEEKELLEKLKM 439 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 67788888888999999966666555531110 0 0012222333 5666666666654433 455555666555
Q ss_pred HHH
Q 020769 126 RLN 128 (321)
Q Consensus 126 Rl~ 128 (321)
++.
T Consensus 440 ~~~ 442 (455)
T PLN02372 440 EAS 442 (455)
T ss_pred HHH
Confidence 544
No 116
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.07 E-value=1.3e+02 Score=22.57 Aligned_cols=9 Identities=22% Similarity=0.660 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 020769 119 QAQKCRARL 127 (321)
Q Consensus 119 ~~~~~~~Rl 127 (321)
+++.|+.+|
T Consensus 42 L~k~c~~~L 50 (75)
T PRK14064 42 LTKLCQDKL 50 (75)
T ss_pred HHHHHHHHH
Confidence 344444443
No 117
>PTZ00196 60S ribosomal protein L36; Provisional
Probab=20.82 E-value=2e+02 Score=22.87 Aligned_cols=40 Identities=28% Similarity=0.423 Sum_probs=29.1
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHhccchhhh--cHHHHHHHH
Q 020769 222 RLQEFIELVRGENNLRAITYARKYLAPWGAT--HMKELQRVM 261 (321)
Q Consensus 222 r~q~fIELir~~~~~eAi~yark~l~~~~~~--~~~ei~~~m 261 (321)
+-...+|||+.|+---|+.|+++-+..+.-. ..+|++.+.
T Consensus 51 YErr~mELLkv~kdKrAlKfaKkRlGth~RaK~Kreel~~vl 92 (98)
T PTZ00196 51 YERRMIELLKVGKDKRALKYAKKRLGTHKRAKAKRDEIQEAL 92 (98)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 4466799999999999999999988766432 234555443
No 118
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=20.53 E-value=7.4e+02 Score=23.53 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHH
Q 020769 144 TRVKRILVDYMLRMSYYETAEKLAES 169 (321)
Q Consensus 144 ~~l~rlI~dyLlR~G~~~tA~~l~~e 169 (321)
=.+.+++.+.|.+.||.+.|..+..+
T Consensus 133 LDgq~~~~qal~~lG~~~~a~aI~~e 158 (301)
T TIGR03362 133 LDGQRLSAQALERLGYAAVAQAIRDE 158 (301)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 67888999999999998887776665
No 119
>PF04522 DUF585: Protein of unknown function (DUF585); InterPro: IPR007610 This region represents the N-termini of Broad bean mottle virus, Gp1 (2a protein), and is always found N-terminal to a predicted RNA dependent RNA polymerase region (IPR001788 from INTERPRO).; GO: 0003723 RNA binding, 0003968 RNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=20.48 E-value=1.3e+02 Score=27.49 Aligned_cols=38 Identities=18% Similarity=0.375 Sum_probs=30.5
Q ss_pred CchhhhcChhcHHHHHHHHHHHHHHHhCCCCCcchHHH
Q 020769 273 TTYKALFEPKQWDFLVDQFKQEFCKLYGMTLEPLLNIY 310 (321)
Q Consensus 273 ~~y~~L~~~~rw~~L~~~F~~~~~~l~gl~~~s~L~~~ 310 (321)
..|.--|++.||..||+.....+-.+.|..--|+=+++
T Consensus 68 G~~ePpfDQarWa~cC~nv~~~~~~~tg~~LiP~pEmA 105 (248)
T PF04522_consen 68 GSYEPPFDQARWASCCENVTNLAEGFTGVRLIPLPEMA 105 (248)
T ss_pred CccCCchhHHHHHHHHHHHHHHHHhhCCCcccChHHHH
Confidence 44555689999999999999999888888877765554
No 120
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=20.48 E-value=3.8e+02 Score=20.17 Aligned_cols=53 Identities=21% Similarity=0.342 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHh
Q 020769 58 TIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEE 111 (321)
Q Consensus 58 ~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lk~kl~~ 111 (321)
-.|..-|.++--++.+...+..+..+. ....+..++||.+-.+|..+..++.+
T Consensus 8 ~Ir~dIk~vd~KVdaLq~~V~~l~~~~-~~v~~l~~klDa~~~~l~~l~~~V~~ 60 (75)
T PF05531_consen 8 VIRQDIKAVDDKVDALQTQVDDLESNL-PDVTELNKKLDAQSAQLTTLNTKVNE 60 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888888887642 23345666777777777776666544
No 121
>KOG1621 consensus 1D-myo-inositol-triphosphate 3-kinase A [Lipid transport and metabolism]
Probab=20.38 E-value=2e+02 Score=28.39 Aligned_cols=59 Identities=19% Similarity=0.349 Sum_probs=41.8
Q ss_pred CCchhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHHHHHHHhhc
Q 020769 35 TQLTEALKLEHQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSENFSKDDAVNHLTSLVSRLQGLKRKLEEGS 113 (321)
Q Consensus 35 ~~~~~~l~le~~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~kl~~lk~kl~~~~ 113 (321)
=+++.+.++|-. +++|||.. |-+..|+..|.+.-.. -...+..+|++|+.+++.|+.+.
T Consensus 327 FRIEgiKk~dG~--------~~~nFKkt-----rt~EqVt~~f~dF~~g-------~~~vlq~yi~rLk~mR~alE~S~ 385 (458)
T KOG1621|consen 327 FRIEGIKKLDGA--------LEKNFKKT-----RTVEQVTTTFMDFFGG-------QRSVLQQYIERLKSMRKALEHSS 385 (458)
T ss_pred eeeeehhhhcch--------hhhcchhh-----hhHHHHHHHHHHHhcc-------cHHHHHHHHHHHHHHHHHhhhcc
Confidence 356667777764 68899987 3445677777776442 12367889999999999998764
No 122
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=20.37 E-value=1.1e+03 Score=25.48 Aligned_cols=67 Identities=10% Similarity=0.127 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHH----HHcCChHHHHHHHHhhhhHhhhcC-ChhhHHhhHHHHHH----HHhcCChHHHHHHHHH
Q 020769 178 IEVFQEAKKVIDA----LQNKEVAPALAWCSDNKSRLKKSK-SKFEFQLRLQEFIE----LVRGENNLRAITYARK 244 (321)
Q Consensus 178 ~e~f~~~~~I~~~----L~~gdi~~AL~W~~~n~~~L~k~~-s~LeF~Lr~q~fIE----Lir~~~~~eAi~yark 244 (321)
.++|..++...+- +..|++++|.+....+-..+..-. ..-.|..-.-+|+| .+|.|+..||+.-..+
T Consensus 767 aeIF~k~gD~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQ 842 (1081)
T KOG1538|consen 767 AEIFLKMGDLKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQ 842 (1081)
T ss_pred HHHHHHhccHHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHH
Confidence 4677766654433 468999999998877733332221 23355556667777 5677888888877764
No 123
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.14 E-value=6.4e+02 Score=22.67 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=19.5
Q ss_pred cccHHHHHHHHHHH---HHHHHHHHHHHH
Q 020769 49 RVPFEHYKKTIRTN---HRAVEKEITSVI 74 (321)
Q Consensus 49 ~vP~E~l~k~fr~~---qk~ieke~~~v~ 74 (321)
..|-|.||+|-|.. .+.+|||...+.
T Consensus 8 ~tp~e~Lr~nqRal~~a~ReleRer~~le 36 (224)
T KOG3230|consen 8 KTPAELLRENQRALNKATRELERERQKLE 36 (224)
T ss_pred CCHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 46999999998864 566788776543
No 124
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=20.09 E-value=2.1e+02 Score=22.97 Aligned_cols=46 Identities=11% Similarity=0.161 Sum_probs=25.6
Q ss_pred HHHHHHHhChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHc-CChHHHHHHHHh
Q 020769 150 LVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQN-KEVAPALAWCSD 205 (321)
Q Consensus 150 I~dyLlR~G~~~tA~~l~~e~~i~~~~d~e~f~~~~~I~~~L~~-gdi~~AL~W~~~ 205 (321)
++..+.+.|+++.+..+....|.-.. -|.-.|.. +|.+.|+++|..
T Consensus 75 ~~~~c~~~~l~~~~~~l~~k~~~~~~----------Al~~~l~~~~d~~~a~~~~~~ 121 (140)
T smart00299 75 VGKLCEKAKLYEEAVELYKKDGNFKD----------AIVTLIEHLGNYEKAIEYFVK 121 (140)
T ss_pred HHHHHHHcCcHHHHHHHHHhhcCHHH----------HHHHHHHcccCHHHHHHHHHh
Confidence 44555555666555555544333110 12223344 789999999987
No 125
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=20.01 E-value=1.5e+02 Score=28.38 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=20.8
Q ss_pred HHHHHHHHcCChHHHHHHHHhhh
Q 020769 185 KKVIDALQNKEVAPALAWCSDNK 207 (321)
Q Consensus 185 ~~I~~~L~~gdi~~AL~W~~~n~ 207 (321)
+.|.++++.||++.||...+|-.
T Consensus 262 ~aI~~AVk~gDi~KAL~LldEAe 284 (303)
T PRK10564 262 QAIKQAVKKGDVDKALKLLDEAE 284 (303)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 57999999999999999998873
Done!