Query 020769
Match_columns 321
No_of_seqs 218 out of 732
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 07:55:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020769.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020769hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uuj_A Platelet-activating fac 92.5 0.14 4.9E-06 38.6 4.4 36 140-175 7-42 (88)
2 2nxp_A Transcription initiatio 90.8 0.5 1.7E-05 39.3 6.5 67 199-265 34-100 (156)
3 2j49_A Transcription initiatio 87.6 0.41 1.4E-05 39.6 3.6 65 198-263 16-80 (148)
4 2j4b_A TAF5, transcription ini 87.5 1 3.5E-05 36.7 5.9 66 198-264 14-79 (138)
5 1deq_A Fibrinogen (alpha chain 85.8 8.1 0.00028 36.5 11.7 26 176-201 176-201 (390)
6 2xtc_A F-box-like/WD repeat-co 80.2 1.9 6.3E-05 32.6 4.1 33 142-174 4-36 (90)
7 2jo8_A Serine/threonine-protei 72.5 4.9 0.00017 27.0 4.0 34 44-77 3-37 (51)
8 2lni_A Stress-induced-phosphop 59.4 46 0.0016 23.8 9.6 92 148-247 20-112 (133)
9 3u4t_A TPR repeat-containing p 57.1 42 0.0014 27.8 8.3 93 149-248 42-137 (272)
10 1elr_A TPR2A-domain of HOP; HO 55.9 51 0.0018 23.3 10.0 97 148-247 8-107 (131)
11 3q15_A PSP28, response regulat 55.0 53 0.0018 29.4 9.1 28 218-245 100-127 (378)
12 2d68_A FOP, FGFR1OP; alpha hel 55.0 23 0.00079 26.1 5.2 38 143-180 18-56 (82)
13 2kck_A TPR repeat; tetratricop 53.0 52 0.0018 22.5 8.5 94 149-248 11-106 (112)
14 3swy_A Cyclic nucleotide-gated 51.8 47 0.0016 21.7 5.7 39 93-131 5-43 (46)
15 3mkr_A Coatomer subunit epsilo 51.3 1.2E+02 0.0042 26.3 11.0 86 147-245 68-156 (291)
16 2xz2_A CSTF-50, isoform B; RNA 50.1 27 0.00094 24.5 4.7 34 141-174 14-47 (66)
17 2dna_A Unnamed protein product 44.8 8.7 0.0003 27.3 1.5 25 184-208 34-60 (67)
18 3swf_A CGMP-gated cation chann 42.3 60 0.0021 23.3 5.6 41 91-131 5-45 (74)
19 3rkv_A Putative peptidylprolyl 42.2 1.1E+02 0.0038 23.2 10.4 53 190-247 73-125 (162)
20 3sf4_A G-protein-signaling mod 41.7 1.7E+02 0.006 25.3 10.4 100 148-248 13-116 (406)
21 2vgx_A Chaperone SYCD; alterna 41.6 1.2E+02 0.004 23.3 9.5 91 149-247 26-117 (148)
22 1t98_A KICB protein, chromosom 41.4 1.9E+02 0.0065 25.6 11.0 108 46-153 158-278 (287)
23 2xcb_A PCRH, regulatory protei 40.8 1.1E+02 0.0038 22.8 9.3 91 149-247 23-114 (142)
24 3sz7_A HSC70 cochaperone (SGT) 40.3 1.2E+02 0.0042 23.1 9.9 94 147-248 14-108 (164)
25 3ghg_A Fibrinogen alpha chain; 40.1 2.8E+02 0.0096 27.3 12.4 28 171-198 168-195 (562)
26 3twe_A Alpha4H; unknown functi 39.6 46 0.0016 18.5 3.6 21 90-110 5-25 (27)
27 3ro2_A PINS homolog, G-protein 39.3 1.6E+02 0.0056 24.3 10.8 99 149-248 10-112 (338)
28 4gcn_A Protein STI-1; structur 39.2 1.2E+02 0.0039 22.5 10.3 97 148-247 12-111 (127)
29 1a17_A Serine/threonine protei 38.2 1.2E+02 0.0041 22.5 9.3 92 148-245 51-143 (166)
30 1xou_B Z5138 gene product; coi 38.1 1.1E+02 0.0038 22.0 6.7 48 53-101 11-61 (95)
31 2ho1_A Type 4 fimbrial biogene 37.4 1.6E+02 0.0055 23.7 10.8 96 145-247 106-203 (252)
32 4a1s_A PINS, partner of inscut 36.6 2.2E+02 0.0075 25.0 10.3 99 149-248 53-155 (411)
33 3u3w_A Transcriptional activat 36.5 2E+02 0.0067 24.5 9.5 98 151-249 82-185 (293)
34 3uq3_A Heat shock protein STI1 36.5 1.6E+02 0.0056 23.5 10.4 96 145-248 140-236 (258)
35 3gwk_C SAG1039, putative uncha 36.2 1.2E+02 0.004 21.8 10.9 36 47-82 5-43 (98)
36 2y4t_A DNAJ homolog subfamily 35.8 2.4E+02 0.0081 25.1 10.6 97 148-246 215-322 (450)
37 1vyh_C Platelet-activating fac 34.7 8.2 0.00028 35.7 0.0 32 142-173 7-38 (410)
38 3uq3_A Heat shock protein STI1 33.9 1.8E+02 0.0062 23.2 10.8 97 147-247 8-107 (258)
39 1whc_A RSGI RUH-027, UBA/UBX 3 32.9 41 0.0014 23.2 3.4 25 185-209 24-51 (64)
40 4i17_A Hypothetical protein; T 32.6 1.9E+02 0.0065 23.1 10.9 93 150-248 48-146 (228)
41 2xpi_A Anaphase-promoting comp 32.3 3.1E+02 0.011 25.5 11.1 21 149-169 412-432 (597)
42 2knz_A Ubiquilin-4; cytoplasm, 32.0 19 0.00064 24.0 1.5 21 186-206 28-50 (53)
43 2cp9_A EF-TS, EF-TSMT, elongat 31.4 44 0.0015 23.3 3.4 22 186-207 26-49 (64)
44 2vq2_A PILW, putative fimbrial 31.4 1.8E+02 0.0063 22.5 10.4 94 147-247 79-175 (225)
45 2dah_A Ubiquilin-3; UBA domain 31.2 21 0.00071 24.0 1.6 21 186-206 26-48 (54)
46 2ekk_A UBA domain from E3 ubiq 31.1 44 0.0015 21.3 3.2 21 186-206 25-46 (47)
47 2bwb_A Ubiquitin-like protein 30.4 20 0.00068 23.2 1.3 19 186-204 24-44 (46)
48 3fse_A Two-domain protein cont 30.2 3.3E+02 0.011 25.2 10.5 41 92-132 226-268 (365)
49 2dba_A Smooth muscle cell asso 30.0 1.6E+02 0.0053 21.3 10.6 94 147-247 31-127 (148)
50 1wr1_B Ubiquitin-like protein 29.9 22 0.00076 24.3 1.6 22 185-206 33-56 (58)
51 1vej_A Riken cDNA 4931431F19; 29.6 20 0.0007 25.8 1.4 22 185-206 45-68 (74)
52 3frr_A Uncharacterized protein 29.5 2.6E+02 0.0088 23.6 9.4 29 285-313 161-189 (191)
53 4gco_A Protein STI-1; structur 29.3 1.7E+02 0.0059 21.6 9.6 91 149-247 18-109 (126)
54 1zl8_A LIN-7; heterodimer, alp 29.2 1.3E+02 0.0044 20.0 6.1 24 65-88 4-27 (53)
55 1wgn_A UBAP1, ubiquitin associ 28.9 55 0.0019 22.8 3.4 22 185-206 34-57 (63)
56 2jy5_A Ubiquilin-1; UBA, alter 28.6 21 0.00071 23.7 1.2 21 186-206 29-51 (52)
57 3hym_B Cell division cycle pro 28.6 2.6E+02 0.0087 23.3 11.9 96 149-247 164-264 (330)
58 3vtx_A MAMA; tetratricopeptide 28.4 2E+02 0.0068 22.0 10.6 95 146-247 75-169 (184)
59 2v5f_A Prolyl 4-hydroxylase su 28.3 1.6E+02 0.0056 21.0 7.2 57 190-246 15-73 (104)
60 2cos_A Serine/threonine protei 27.6 45 0.0015 22.5 2.7 21 186-206 25-48 (54)
61 2dak_A Ubiquitin carboxyl-term 27.4 58 0.002 22.2 3.4 24 186-209 25-50 (63)
62 1yke_B RNA polymerase II holoe 26.9 2.5E+02 0.0086 22.7 10.2 75 58-132 54-131 (151)
63 3mv2_B Coatomer subunit epsilo 26.8 1.1E+02 0.0037 27.8 6.2 51 192-245 112-162 (310)
64 2qx5_A Nucleoporin NIC96; mRNA 26.8 34 0.0012 34.8 3.0 25 147-171 155-179 (661)
65 3ulq_A Response regulator aspa 26.7 1.6E+02 0.0055 26.0 7.4 60 191-250 114-174 (383)
66 3q49_B STIP1 homology and U bo 26.5 1.8E+02 0.0061 20.8 9.6 92 148-247 13-105 (137)
67 3ieg_A DNAJ homolog subfamily 26.3 2.9E+02 0.0099 23.2 10.5 22 147-168 157-178 (359)
68 3ulq_A Response regulator aspa 26.2 3.3E+02 0.011 23.8 19.4 101 145-247 104-212 (383)
69 3ghg_A Fibrinogen alpha chain; 26.0 3.6E+02 0.012 26.5 9.8 17 97-113 114-130 (562)
70 3upv_A Heat shock protein STI1 25.8 1.8E+02 0.0062 20.7 9.6 91 149-247 9-100 (126)
71 2vyi_A SGTA protein; chaperone 25.1 1.7E+02 0.0059 20.2 10.8 94 146-247 14-108 (131)
72 1wji_A Tudor domain containing 24.9 67 0.0023 22.1 3.4 23 186-208 25-49 (63)
73 3axj_A GM27569P, translin; tra 24.8 3.5E+02 0.012 23.6 11.5 61 144-204 112-187 (249)
74 1z96_A DNA-damage, UBA-domain 24.6 69 0.0024 19.2 3.1 17 187-203 21-39 (40)
75 3ro3_A PINS homolog, G-protein 24.3 2E+02 0.0068 20.6 11.5 106 144-249 9-119 (164)
76 3gw4_A Uncharacterized protein 23.8 2.5E+02 0.0084 21.5 12.9 104 144-248 26-136 (203)
77 3as5_A MAMA; tetratricopeptide 23.6 2.3E+02 0.0077 21.0 12.1 91 148-246 46-137 (186)
78 1ykh_B RNA polymerase II holoe 23.5 2.7E+02 0.0093 21.9 10.3 74 57-130 53-129 (132)
79 1a17_A Serine/threonine protei 23.3 2.2E+02 0.0076 20.9 11.0 95 145-247 14-109 (166)
80 2q7f_A YRRB protein; TPR, prot 23.1 2.8E+02 0.0095 21.9 9.4 91 148-246 129-220 (243)
81 2g3q_A Protein YBL047C; endocy 23.1 78 0.0027 19.6 3.2 21 186-206 20-42 (43)
82 2fbn_A 70 kDa peptidylprolyl i 22.7 2.8E+02 0.0095 21.7 10.1 93 148-247 42-150 (198)
83 4gkw_A Spindle assembly abnorm 22.4 3E+02 0.01 21.9 8.1 67 45-111 62-130 (167)
84 1wiv_A UBP14, ubiquitin-specif 22.1 76 0.0026 22.5 3.3 22 186-207 45-68 (73)
85 3gyz_A Chaperone protein IPGC; 22.1 2.8E+02 0.0095 21.5 8.9 92 149-248 41-133 (151)
86 1ify_A HHR23A, UV excision rep 22.0 72 0.0025 20.6 2.9 22 185-206 23-46 (49)
87 3ieg_A DNAJ homolog subfamily 21.9 3.5E+02 0.012 22.6 11.3 24 146-169 122-145 (359)
88 3nf1_A KLC 1, kinesin light ch 21.9 3.3E+02 0.011 22.3 11.3 102 145-248 28-140 (311)
89 2dai_A Ubadc1, ubiquitin assoc 21.8 89 0.003 22.8 3.7 23 186-208 45-69 (83)
90 1vek_A UBP14, ubiquitin-specif 21.7 81 0.0028 23.0 3.5 24 185-208 44-70 (84)
91 2fo7_A Synthetic consensus TPR 21.6 2E+02 0.007 19.7 9.6 91 149-247 6-97 (136)
92 3he5_A Synzip1; heterodimeric 21.5 1.2E+02 0.0043 19.0 3.7 19 64-82 6-24 (49)
93 2eap_A Lymphocyte cytosolic pr 21.4 79 0.0027 23.6 3.3 32 138-174 19-50 (90)
94 4ae4_A Ubiquitin-associated pr 21.4 67 0.0023 25.1 3.1 21 185-205 91-113 (118)
95 2cpw_A CBL-interacting protein 21.3 76 0.0026 21.8 3.1 23 185-207 34-59 (64)
96 2crn_A Ubash3A protein; compac 21.2 82 0.0028 21.7 3.2 24 185-208 24-50 (64)
97 1hh8_A P67PHOX, NCF-2, neutrop 20.9 3E+02 0.01 21.4 11.4 116 146-264 39-166 (213)
98 2dag_A Ubiquitin carboxyl-term 20.6 89 0.003 22.2 3.4 25 185-209 24-51 (74)
99 4f3v_A ESX-1 secretion system 20.5 4.5E+02 0.015 23.3 10.8 103 137-246 95-198 (282)
100 2dkl_A Trinucleotide repeat co 20.5 71 0.0024 23.4 2.9 26 187-212 38-65 (85)
101 4ioe_A Secreted protein ESXB; 20.4 2.3E+02 0.0078 19.8 11.1 36 47-82 6-44 (93)
102 3hym_B Cell division cycle pro 20.1 3.6E+02 0.012 22.3 8.0 91 150-248 62-154 (330)
No 1
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=92.51 E-value=0.14 Score=38.59 Aligned_cols=36 Identities=14% Similarity=0.282 Sum_probs=31.9
Q ss_pred hhcHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCc
Q 020769 140 EWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDL 175 (321)
Q Consensus 140 ~w~~~~l~rlI~dyLlR~G~~~tA~~l~~e~~i~~~ 175 (321)
...+..|++.|++||..+||.+++.+|.++.+++..
T Consensus 7 ~rQ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~ 42 (88)
T 1uuj_A 7 QRQRDELNRAIADYLRSNGYEEAYSVFKKEAELDMN 42 (88)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC
Confidence 445679999999999999999999999999988743
No 2
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=90.77 E-value=0.5 Score=39.31 Aligned_cols=67 Identities=12% Similarity=0.134 Sum_probs=54.1
Q ss_pred HHHHHHhhhhHhhhcCChhhHHhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHhHhh
Q 020769 199 ALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATLA 265 (321)
Q Consensus 199 AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~~eAi~yark~l~~~~~~~~~ei~~~m~lLa 265 (321)
-..|+..+-..-+..-+.+-|=+.+.-|++||.+|...+|-.|..++-+-+...|.++|+++.++.-
T Consensus 34 L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~ 100 (156)
T 2nxp_A 34 LKHFIECSLDCHRAELSQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTK 100 (156)
T ss_dssp HHHHHHTSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCS
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCC
Confidence 4467776644333334678999999999999999999999999999988888888899999877543
No 3
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=87.64 E-value=0.41 Score=39.58 Aligned_cols=65 Identities=15% Similarity=0.265 Sum_probs=49.9
Q ss_pred HHHHHHHhhhhHhhhcCChhhHHhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHhH
Q 020769 198 PALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMAT 263 (321)
Q Consensus 198 ~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~~eAi~yark~l~~~~~~~~~ei~~~m~l 263 (321)
.-..|++.+-...+..-+.+-|=+.+.-|++||..| ..+|-.|..++-+-+...|.++|+++.++
T Consensus 16 ~Lr~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i 80 (148)
T 2j49_A 16 MLKNWVDSSLEIYKPELSYIMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSV 80 (148)
T ss_dssp HHHHHHHTSCTTTHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTC
T ss_pred HHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcC
Confidence 344677766322222226789999999999999999 99999999998888877777888877664
No 4
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=87.46 E-value=1 Score=36.69 Aligned_cols=66 Identities=14% Similarity=0.257 Sum_probs=49.6
Q ss_pred HHHHHHHhhhhHhhhcCChhhHHhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHhHh
Q 020769 198 PALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATL 264 (321)
Q Consensus 198 ~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~~eAi~yark~l~~~~~~~~~ei~~~m~lL 264 (321)
.-..|++.+-..-+..=+.+-|=+.+.-|++||.+|...+|-.|..++-+.+... .++|+++.++.
T Consensus 14 ~L~~wv~~sld~yk~EL~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~ 79 (138)
T 2j4b_A 14 SLKTWIEDSLDLFKNDLLPLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIY 79 (138)
T ss_dssp HHHHHHHHSCHHHHHHHGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCC
T ss_pred HHHHHHHhCcHhhHHHHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCC
Confidence 3456887764333333367899999999999999999999999999888777665 77788776644
No 5
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=85.84 E-value=8.1 Score=36.47 Aligned_cols=26 Identities=19% Similarity=0.419 Sum_probs=15.2
Q ss_pred ccHHHHHHHHHHHHHHHcCChHHHHH
Q 020769 176 VDIEVFQEAKKVIDALQNKEVAPALA 201 (321)
Q Consensus 176 ~d~e~f~~~~~I~~~L~~gdi~~AL~ 201 (321)
+|++.+++..+-...+...|+-|.+.
T Consensus 176 vD~e~ye~qqKQL~qv~a~~llP~~~ 201 (390)
T 1deq_A 176 VDLEDYKNQQKQLEQVIAINLLPSRD 201 (390)
T ss_pred ccHHHHHHHHHHHHhhhhhccccccc
Confidence 56666666665555555555555554
No 6
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=80.22 E-value=1.9 Score=32.62 Aligned_cols=33 Identities=15% Similarity=0.270 Sum_probs=30.1
Q ss_pred cHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCC
Q 020769 142 NNTRVKRILVDYMLRMSYYETAEKLAESSNIQD 174 (321)
Q Consensus 142 ~~~~l~rlI~dyLlR~G~~~tA~~l~~e~~i~~ 174 (321)
...++|.+|--||...||..+|-+|.+|++|..
T Consensus 4 tsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~~ 36 (90)
T 2xtc_A 4 TSDEVNFLVYRYLQESGFSHSAFTFGIESHISQ 36 (90)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGGG
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCCc
Confidence 457899999999999999999999999998863
No 7
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=72.48 E-value=4.9 Score=26.97 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=28.6
Q ss_pred cccccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020769 44 EHQFLR-VPFEHYKKTIRTNHRAVEKEITSVISNV 77 (321)
Q Consensus 44 e~~~~~-vP~E~l~k~fr~~qk~ieke~~~v~~~~ 77 (321)
|+.||+ ++||.|.++....+..+|+|+..+-..-
T Consensus 3 df~fLk~ls~eEL~~rl~~Ld~~Me~Ei~elr~RY 37 (51)
T 2jo8_A 3 DYEFLKSWTVEDLQKRLLALDPMMEQEIEEIRQKY 37 (51)
T ss_dssp CCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHhCCHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 455666 8999999999999999999998876544
No 8
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=59.41 E-value=46 Score=23.82 Aligned_cols=92 Identities=13% Similarity=0.041 Sum_probs=55.3
Q ss_pred HHHHHHHHHhChHHHHHHHHHH-hCCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHH
Q 020769 148 RILVDYMLRMSYYETAEKLAES-SNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEF 226 (321)
Q Consensus 148 rlI~dyLlR~G~~~tA~~l~~e-~~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~f 226 (321)
..++..+.+.|.++.|..+.+. ..+. ..+.+.+..+..+ ....|+.+.|+.++..--.. . ... ...+...-
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~--~~~~~~~~~A~~~~~~a~~~-~--~~~--~~~~~~la 91 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAAC--YTKLLEFQLALKDCEECIQL-E--PTF--IKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHH--HTTTTCHHHHHHHHHHHHHH-C--TTC--HHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH--HHHhccHHHHHHHHHHHHHh-C--CCc--hHHHHHHH
Confidence 3456777788888777775554 3443 2234444433333 35689999999998765321 1 111 22233333
Q ss_pred HHHHhcCChHHHHHHHHHhcc
Q 020769 227 IELVRGENNLRAITYARKYLA 247 (321)
Q Consensus 227 IELir~~~~~eAi~yark~l~ 247 (321)
.-+.+.|+..+|+.+.++-+.
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 445677899999999987553
No 9
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=57.05 E-value=42 Score=27.82 Aligned_cols=93 Identities=16% Similarity=0.119 Sum_probs=46.1
Q ss_pred HHHHHHHHhChHHHHHHHHHHh-CCCCccc--HHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHH
Q 020769 149 ILVDYMLRMSYYETAEKLAESS-NIQDLVD--IEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQE 225 (321)
Q Consensus 149 lI~dyLlR~G~~~tA~~l~~e~-~i~~~~d--~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~ 225 (321)
.++..+.+.|.++.|....+.. ......+ ...+..+..+ ....|+.+.|++++..--.. .... ...+..-
T Consensus 42 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~--~~~~~~~~~A~~~~~~a~~~-~~~~----~~~~~~l 114 (272)
T 3u4t_A 42 RRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI--LMKKGQDSLAIQQYQAAVDR-DTTR----LDMYGQI 114 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHH-STTC----THHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH--HHHcccHHHHHHHHHHHHhc-Cccc----HHHHHHH
Confidence 3444666667666666654432 2211111 1222222222 24567777777777654321 1111 1233333
Q ss_pred HHHHHhcCChHHHHHHHHHhccc
Q 020769 226 FIELVRGENNLRAITYARKYLAP 248 (321)
Q Consensus 226 fIELir~~~~~eAi~yark~l~~ 248 (321)
-.-+...|+..+|+.+.++-+.-
T Consensus 115 ~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 115 GSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHHHHHTTCHHHHHHHHGGGCCS
T ss_pred HHHHHHccCHHHHHHHHHHHhhc
Confidence 44445667778888777766653
No 10
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=55.86 E-value=51 Score=23.31 Aligned_cols=97 Identities=12% Similarity=0.114 Sum_probs=57.6
Q ss_pred HHHHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCCh--hhHHhhHH
Q 020769 148 RILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSK--FEFQLRLQ 224 (321)
Q Consensus 148 rlI~dyLlR~G~~~tA~~l~~e~-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~--LeF~Lr~q 224 (321)
..++..+...|.++.|..+.+.. .+. ..+...+..+..+ ....|+.+.|+.++..--..-...... .....+..
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAV--YFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH--HHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHH--HHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44667777888888877765543 222 1223333333333 346899999999998764332221111 11334444
Q ss_pred HHHHHHhcCChHHHHHHHHHhcc
Q 020769 225 EFIELVRGENNLRAITYARKYLA 247 (321)
Q Consensus 225 ~fIELir~~~~~eAi~yark~l~ 247 (321)
--.-+.+.|+..+|+.+.++-+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 44456678999999999987654
No 11
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=55.05 E-value=53 Score=29.40 Aligned_cols=28 Identities=14% Similarity=0.100 Sum_probs=12.4
Q ss_pred hHHhhHHHHHHHHhcCChHHHHHHHHHh
Q 020769 218 EFQLRLQEFIELVRGENNLRAITYARKY 245 (321)
Q Consensus 218 eF~Lr~q~fIELir~~~~~eAi~yark~ 245 (321)
.+..+...-+-....|+..+|+.|.++-
T Consensus 100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~a 127 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEYVEAIGYYREA 127 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 3333333334444445555555554443
No 12
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=54.96 E-value=23 Score=26.05 Aligned_cols=38 Identities=11% Similarity=0.094 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHhCCCC-cccHHH
Q 020769 143 NTRVKRILVDYMLRMSYYETAEKLAESSNIQD-LVDIEV 180 (321)
Q Consensus 143 ~~~l~rlI~dyLlR~G~~~tA~~l~~e~~i~~-~~d~e~ 180 (321)
...++.+|.|||--.||.=|...|..|+|... ..|.+.
T Consensus 18 GrLi~~LVrEyLef~~l~~TlsVf~pEs~l~~~~~~R~~ 56 (82)
T 2d68_A 18 GRLVASLVAEFLQFFNLDFTLAVFQPETSTLQGLEGREN 56 (82)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTCC---CCHHH
T ss_pred cHHHHHHHHHHHHHcCCcchHHhhhhccCCCCCCCCHHH
Confidence 36789999999999999999999999999963 445443
No 13
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=52.98 E-value=52 Score=22.54 Aligned_cols=94 Identities=7% Similarity=-0.036 Sum_probs=55.1
Q ss_pred HHHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHHH
Q 020769 149 ILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFI 227 (321)
Q Consensus 149 lI~dyLlR~G~~~tA~~l~~e~-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fI 227 (321)
.++..+.+.|-++.|....+.. .+. ..+.+.+..+..+ ....|+.+.|+.++..--. ..........+...-.
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~--~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKA--LYNLERYEEAVDCYNYVIN---VIEDEYNKDVWAAKAD 84 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHH---TSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH--HHHccCHHHHHHHHHHHHH---hCcccchHHHHHHHHH
Confidence 3456667788777776655432 222 1233443333332 3468999999999876532 1112112334444455
Q ss_pred HHHhc-CChHHHHHHHHHhccc
Q 020769 228 ELVRG-ENNLRAITYARKYLAP 248 (321)
Q Consensus 228 ELir~-~~~~eAi~yark~l~~ 248 (321)
-+.+. |+..+|++|.++-+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 56778 9999999999876543
No 14
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=51.76 E-value=47 Score=21.67 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcc
Q 020769 93 NHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLE 131 (321)
Q Consensus 93 ~~ld~li~kl~~lk~kl~~~~~~e~~~~~~~~~Rl~~L~ 131 (321)
++++.|-..|+.++-++.....+-.....+++.||..|.
T Consensus 5 ekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE 43 (46)
T 3swy_A 5 EKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLE 43 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445555666666666666666777888888887764
No 15
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=51.28 E-value=1.2e+02 Score=26.27 Aligned_cols=86 Identities=12% Similarity=0.072 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhChHHHHHHHHHHh---CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhH
Q 020769 147 KRILVDYMLRMSYYETAEKLAESS---NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRL 223 (321)
Q Consensus 147 ~rlI~dyLlR~G~~~tA~~l~~e~---~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~ 223 (321)
-+.+++++.+.|-.+.|....++. ++. +-+.+....+.. -....|+.+.|++++.. ....+ .+.
T Consensus 68 ~~~la~~~~~~~~~~~A~~~l~~ll~~~~~-P~~~~~~~~la~--~~~~~g~~~~Al~~l~~--------~~~~~--~~~ 134 (291)
T 3mkr_A 68 VRMFAEYLASHSRRDAIVAELDREMSRSVD-VTNTTFLLMAAS--IYFYDQNPDAALRTLHQ--------GDSLE--CMA 134 (291)
T ss_dssp HHHHHHHHHCSTTHHHHHHHHHHHHHSCCC-CSCHHHHHHHHH--HHHHTTCHHHHHHHHTT--------CCSHH--HHH
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHhcccC-CCCHHHHHHHHH--HHHHCCCHHHHHHHHhC--------CCCHH--HHH
Confidence 345666666666555554433321 211 112222211111 12356666666666665 11222 222
Q ss_pred HHHHHHHhcCChHHHHHHHHHh
Q 020769 224 QEFIELVRGENNLRAITYARKY 245 (321)
Q Consensus 224 q~fIELir~~~~~eAi~yark~ 245 (321)
....-+++.|+..+|+.+.++-
T Consensus 135 ~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 135 MTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 2222344556666666665543
No 16
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=50.09 E-value=27 Score=24.55 Aligned_cols=34 Identities=12% Similarity=0.109 Sum_probs=30.5
Q ss_pred hcHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCC
Q 020769 141 WNNTRVKRILVDYMLRMSYYETAEKLAESSNIQD 174 (321)
Q Consensus 141 w~~~~l~rlI~dyLlR~G~~~tA~~l~~e~~i~~ 174 (321)
-.|+.|-|+|+.-|.--||...|..|...-+.+.
T Consensus 14 K~Re~LYrLIISQL~YDG~~~iA~~L~~~v~~~~ 47 (66)
T 2xz2_A 14 KNREILYRLMISQLMYDGLEKFAMELSMLVKADQ 47 (66)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCCCC
Confidence 3578999999999999999999999999988764
No 17
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=44.82 E-value=8.7 Score=27.27 Aligned_cols=25 Identities=12% Similarity=0.128 Sum_probs=19.6
Q ss_pred HHHHHHHHH--cCChHHHHHHHHhhhh
Q 020769 184 AKKVIDALQ--NKEVAPALAWCSDNKS 208 (321)
Q Consensus 184 ~~~I~~~L~--~gdi~~AL~W~~~n~~ 208 (321)
....+++|+ +||++.|++|+-.+.+
T Consensus 34 ~~an~~AL~at~Gnve~Ave~L~~~~~ 60 (67)
T 2dna_A 34 YNANLQALIATDGDTNAAIYKLKSSQG 60 (67)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 335677775 7999999999987754
No 18
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=42.33 E-value=60 Score=23.34 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcc
Q 020769 91 AVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLE 131 (321)
Q Consensus 91 ~~~~ld~li~kl~~lk~kl~~~~~~e~~~~~~~~~Rl~~L~ 131 (321)
...+++.|-..|+.++-++.....+-.....+++.||..|.
T Consensus 5 lEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE 45 (74)
T 3swf_A 5 LEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVE 45 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666666776666666677888888887775
No 19
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=42.20 E-value=1.1e+02 Score=23.25 Aligned_cols=53 Identities=9% Similarity=-0.090 Sum_probs=35.8
Q ss_pred HHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHHHHHHhcCChHHHHHHHHHhcc
Q 020769 190 ALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLA 247 (321)
Q Consensus 190 ~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~~eAi~yark~l~ 247 (321)
.+..|+.+.|+.+|..--. +. .. ....+...-.-+...|+..+|+.+.++-+.
T Consensus 73 ~~~~~~~~~A~~~~~~al~-~~--p~--~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 73 YLNIGDLHEAEETSSEVLK-RE--ET--NEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHTCHHHHHHHHHHHHH-HS--TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHh-cC--Cc--chHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 4578999999999976521 11 11 233444445556678999999999987654
No 20
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=41.66 E-value=1.7e+02 Score=25.31 Aligned_cols=100 Identities=11% Similarity=-0.022 Sum_probs=60.6
Q ss_pred HHHHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHH--HHHHHHHHcCChHHHHHHHHhhhhHhhhcC-ChhhHHhhH
Q 020769 148 RILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEA--KKVIDALQNKEVAPALAWCSDNKSRLKKSK-SKFEFQLRL 223 (321)
Q Consensus 148 rlI~dyLlR~G~~~tA~~l~~e~-~i~~~~d~e~f~~~--~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~-s~LeF~Lr~ 223 (321)
...++.+++.|.++.|..+.++. .+. ..+.+..... ..-.-....|+.+.|+.++.+--....+.+ .......+.
T Consensus 13 ~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 91 (406)
T 3sf4_A 13 ALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG 91 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 35688889999988888866543 222 2233222211 112233478999999999887544433332 233344444
Q ss_pred HHHHHHHhcCChHHHHHHHHHhccc
Q 020769 224 QEFIELVRGENNLRAITYARKYLAP 248 (321)
Q Consensus 224 q~fIELir~~~~~eAi~yark~l~~ 248 (321)
.--.-+...|+..+|+.+.++-+.-
T Consensus 92 ~la~~~~~~g~~~~A~~~~~~al~~ 116 (406)
T 3sf4_A 92 NLGNTLKVLGNFDEAIVCCQRHLDI 116 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455566779999999988866543
No 21
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=41.64 E-value=1.2e+02 Score=23.27 Aligned_cols=91 Identities=13% Similarity=0.019 Sum_probs=56.5
Q ss_pred HHHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHHH
Q 020769 149 ILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFI 227 (321)
Q Consensus 149 lI~dyLlR~G~~~tA~~l~~e~-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fI 227 (321)
.++..+++.|.++.|..+.+.. .+. ..+.+.+..+..+. ...|+.+.|++++..-- .+...+....| .--.
T Consensus 26 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~--~~~g~~~~A~~~~~~al-~l~p~~~~~~~----~lg~ 97 (148)
T 2vgx_A 26 SLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACR--QAMGQYDLAIHSYSYGA-VMDIXEPRFPF----HAAE 97 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH--HHTTCHHHHHHHHHHHH-HHSTTCTHHHH----HHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHH--HHHhhHHHHHHHHHHHH-hcCCCCchHHH----HHHH
Confidence 3577788889888887765543 332 23445544444332 47899999999997652 22222233332 3344
Q ss_pred HHHhcCChHHHHHHHHHhcc
Q 020769 228 ELVRGENNLRAITYARKYLA 247 (321)
Q Consensus 228 ELir~~~~~eAi~yark~l~ 247 (321)
-+...|+..+|+.+.++-+.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 46678999999999987654
No 22
>1t98_A KICB protein, chromosome partition protein MUKF; winged helix, helix-turn helix, domain swapped, condensin; 2.90A {Escherichia coli} SCOP: a.4.5.65 a.47.6.1
Probab=41.36 E-value=1.9e+02 Score=25.63 Aligned_cols=108 Identities=11% Similarity=0.183 Sum_probs=63.1
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CCChHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHH
Q 020769 46 QFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSE-NFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCR 124 (321)
Q Consensus 46 ~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~-~~~~~~~~~~ld~li~kl~~lk~kl~~~~~~e~~~~~~~~ 124 (321)
+-+|.....+--..--.|+.++-.-..|...|+++-... ...-..+...|++.-..|+.|+..++..-.+-...+-+++
T Consensus 158 apLkySVaeifd~IDl~QR~mDeQQ~~Vk~~IA~LL~qDW~~AI~~CE~LL~eTs~tLRELqDtL~aagd~lqa~Ll~IQ 237 (287)
T 1t98_A 158 APLKYSVAEIFDSIDLTQRLMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLRELQDTLEAAGDKLQANLLRIQ 237 (287)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hheeeeHHHHHhhhhHHHHhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHH
Confidence 445777777888888899999999999999998874420 0111234455666666666666666554333222222222
Q ss_pred HHH------Hhccc--cC----cchhhhhcHHHHHHHHHHH
Q 020769 125 ARL------NHLES--AD----AENLAEWNNTRVKRILVDY 153 (321)
Q Consensus 125 ~Rl------~~L~~--~~----~~~~~~w~~~~l~rlI~dy 153 (321)
.-. ++... ++ .+....|.+..++-+|+.+
T Consensus 238 ~~~~~~~~l~~vd~l~~~Lq~klDRI~sWGqq~idlWigYd 278 (287)
T 1t98_A 238 DATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIGYD 278 (287)
T ss_dssp HHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 211 00000 00 2234679999999888764
No 23
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=40.82 E-value=1.1e+02 Score=22.82 Aligned_cols=91 Identities=12% Similarity=-0.041 Sum_probs=55.6
Q ss_pred HHHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHHH
Q 020769 149 ILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFI 227 (321)
Q Consensus 149 lI~dyLlR~G~~~tA~~l~~e~-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fI 227 (321)
.++..+++.|-++.|..+.+.. .+. +-+.+.+..+..+. ...|+.+.|+.++..--. +...+... +...-.
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~--~~~g~~~~A~~~~~~al~-~~p~~~~~----~~~lg~ 94 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACR--QSLGLYEQALQSYSYGAL-MDINEPRF----PFHAAE 94 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHH-HCTTCTHH----HHHHHH
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHH--HHHhhHHHHHHHHHHHHh-cCCCCcHH----HHHHHH
Confidence 3566778888888887766543 222 23445544444432 468999999999875422 22222222 223334
Q ss_pred HHHhcCChHHHHHHHHHhcc
Q 020769 228 ELVRGENNLRAITYARKYLA 247 (321)
Q Consensus 228 ELir~~~~~eAi~yark~l~ 247 (321)
-+...|+..+|+.+.++-+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 45677999999999886543
No 24
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=40.26 E-value=1.2e+02 Score=23.09 Aligned_cols=94 Identities=9% Similarity=-0.101 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHH
Q 020769 147 KRILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQE 225 (321)
Q Consensus 147 ~rlI~dyLlR~G~~~tA~~l~~e~-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~ 225 (321)
-..++..+++.|.++.|....+.. .+. ..+...+..+..+ .+..|+.+.|+.++..--. + +.. ....+...
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~al~-~---~p~-~~~~~~~l 85 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAA--YSASGQHEKAAEDAELATV-V---DPK-YSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHH-H---CTT-CHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHH--HHHccCHHHHHHHHHHHHH-h---CCC-CHHHHHHH
Confidence 345677777888888777655442 332 2234444444433 3568999999999876522 1 111 12333444
Q ss_pred HHHHHhcCChHHHHHHHHHhccc
Q 020769 226 FIELVRGENNLRAITYARKYLAP 248 (321)
Q Consensus 226 fIELir~~~~~eAi~yark~l~~ 248 (321)
-.-+.+.|+..+|+.+.++-+.-
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh
Confidence 44566779999999999876543
No 25
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=40.14 E-value=2.8e+02 Score=27.27 Aligned_cols=28 Identities=18% Similarity=0.476 Sum_probs=20.1
Q ss_pred CCCCcccHHHHHHHHHHHHHHHcCChHH
Q 020769 171 NIQDLVDIEVFQEAKKVIDALQNKEVAP 198 (321)
Q Consensus 171 ~i~~~~d~e~f~~~~~I~~~L~~gdi~~ 198 (321)
.++..+|.+.|+..++-.+.+-.-|+.|
T Consensus 168 ~~~~~vd~~sY~~~QKQLeQv~a~dL~p 195 (562)
T 3ghg_A 168 ALAREVDLKDYEDQQKQLEQVIAKDLLP 195 (562)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHTTCCCC
T ss_pred hheeecchHHHHHHHHHHHHHhhcccCC
Confidence 3456688888988887777776666654
No 26
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=39.58 E-value=46 Score=18.54 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 020769 90 DAVNHLTSLVSRLQGLKRKLE 110 (321)
Q Consensus 90 ~~~~~ld~li~kl~~lk~kl~ 110 (321)
+.-+.|+.+-++++.+++|+.
T Consensus 5 elykeledlqerlrklrkklr 25 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 345667888899999988874
No 27
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=39.31 E-value=1.6e+02 Score=24.34 Aligned_cols=99 Identities=11% Similarity=-0.014 Sum_probs=59.3
Q ss_pred HHHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHH--HHHHHHHHHcCChHHHHHHHHhhhhHhhhcC-ChhhHHhhHH
Q 020769 149 ILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQE--AKKVIDALQNKEVAPALAWCSDNKSRLKKSK-SKFEFQLRLQ 224 (321)
Q Consensus 149 lI~dyLlR~G~~~tA~~l~~e~-~i~~~~d~e~f~~--~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~-s~LeF~Lr~q 224 (321)
+.+..+++.|.++.|..+.++. .+. ..+...... .....-....|+.+.|++++..-.....+.+ ......++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 4577888899888887766543 222 223222111 1122233478999999999887644433322 2233444444
Q ss_pred HHHHHHhcCChHHHHHHHHHhccc
Q 020769 225 EFIELVRGENNLRAITYARKYLAP 248 (321)
Q Consensus 225 ~fIELir~~~~~eAi~yark~l~~ 248 (321)
--.-+...|+..+|+.+.++-+.-
T Consensus 89 l~~~~~~~g~~~~A~~~~~~al~~ 112 (338)
T 3ro2_A 89 LGNTLKVLGNFDEAIVCCQRHLDI 112 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHH
Confidence 455566789999999988875543
No 28
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=39.21 E-value=1.2e+02 Score=22.53 Aligned_cols=97 Identities=10% Similarity=0.196 Sum_probs=57.0
Q ss_pred HHHHHHHHHhChHHHHHHHHHH-hCCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhh--HHhhHH
Q 020769 148 RILVDYMLRMSYYETAEKLAES-SNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFE--FQLRLQ 224 (321)
Q Consensus 148 rlI~dyLlR~G~~~tA~~l~~e-~~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~Le--F~Lr~q 224 (321)
+-++.-+++.|-++.|...-+. ..+. +-+...+..+..+. +..|+.+.|++++..--.--........ -..+..
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~--~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVY--FEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHH--HHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3467888899988887775443 3343 23455555554443 4679999999998765321111111111 112222
Q ss_pred HHHHHHhcCChHHHHHHHHHhcc
Q 020769 225 EFIELVRGENNLRAITYARKYLA 247 (321)
Q Consensus 225 ~fIELir~~~~~eAi~yark~l~ 247 (321)
.-.-+...|+..+|+.|.++-+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 22334567899999999988765
No 29
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=38.20 E-value=1.2e+02 Score=22.47 Aligned_cols=92 Identities=15% Similarity=0.036 Sum_probs=49.3
Q ss_pred HHHHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHH
Q 020769 148 RILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEF 226 (321)
Q Consensus 148 rlI~dyLlR~G~~~tA~~l~~e~-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~f 226 (321)
..++..+.+.|.++.|....+.. .+. ..+...+..+..+ ....|+.+.|+.++..--.. ....-.........
T Consensus 51 ~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~--~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~ 124 (166)
T 1a17_A 51 GNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS--NMALGKFRAALRDYETVVKV---KPHDKDAKMKYQEC 124 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH--HHHhccHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 34566667777777766654432 222 1223333333332 34678899999888754321 11222222233334
Q ss_pred HHHHhcCChHHHHHHHHHh
Q 020769 227 IELVRGENNLRAITYARKY 245 (321)
Q Consensus 227 IELir~~~~~eAi~yark~ 245 (321)
..+++.|+..+|+.+..+.
T Consensus 125 ~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 125 NKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccch
Confidence 4455667788888777643
No 30
>1xou_B Z5138 gene product; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.2
Probab=38.12 E-value=1.1e+02 Score=22.01 Aligned_cols=48 Identities=27% Similarity=0.401 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHhhccCCCChHHHHHHHHHHHHH
Q 020769 53 EHYKKTIRTNHRAVEK---EITSVISNVADVSDSENFSKDDAVNHLTSLVSR 101 (321)
Q Consensus 53 E~l~k~fr~~qk~iek---e~~~v~~~~~~l~~~~~~~~~~~~~~ld~li~k 101 (321)
|+|-|..|+--..|.| |++-|...++.++.....++ ++.+.|+.+|+-
T Consensus 11 elldkkirseie~ikkiiaefdvvke~v~~l~ekakt~p-qaae~ln~lieg 61 (95)
T 1xou_B 11 ELLDKKIRSEIEAIKKIIAEFDVVKESVNELSEKAKTDP-QAAEKLNKLIEG 61 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHh
Confidence 4566666654443333 66666666665543211222 355667766665
No 31
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=37.44 E-value=1.6e+02 Score=23.72 Aligned_cols=96 Identities=17% Similarity=0.123 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhChHHHHHHHHHHhCC--CCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhh
Q 020769 145 RVKRILVDYMLRMSYYETAEKLAESSNI--QDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLR 222 (321)
Q Consensus 145 ~l~rlI~dyLlR~G~~~tA~~l~~e~~i--~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr 222 (321)
.+-..++..+.+.|.++.|..+.+..-- ....+...+..+. .-.+..|+.+.|++++.+--.. ..... ..+
T Consensus 106 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la--~~~~~~g~~~~A~~~~~~~~~~---~~~~~--~~~ 178 (252)
T 2ho1_A 106 RVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLG--LVSLQMKKPAQAKEYFEKSLRL---NRNQP--SVA 178 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHH---CSCCH--HHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhc---CcccH--HHH
Confidence 3445567777888888888776665422 1222233333332 2345789999999988765321 11222 222
Q ss_pred HHHHHHHHhcCChHHHHHHHHHhcc
Q 020769 223 LQEFIELVRGENNLRAITYARKYLA 247 (321)
Q Consensus 223 ~q~fIELir~~~~~eAi~yark~l~ 247 (321)
..--.-+.+.|+..+|+.+.++.+.
T Consensus 179 ~~la~~~~~~g~~~~A~~~~~~~~~ 203 (252)
T 2ho1_A 179 LEMADLLYKEREYVPARQYYDLFAQ 203 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2222334567889999988887554
No 32
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=36.58 E-value=2.2e+02 Score=24.99 Aligned_cols=99 Identities=7% Similarity=-0.090 Sum_probs=57.7
Q ss_pred HHHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHH--HHHHHHHHcCChHHHHHHHHhhhhHhhhcC-ChhhHHhhHH
Q 020769 149 ILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEA--KKVIDALQNKEVAPALAWCSDNKSRLKKSK-SKFEFQLRLQ 224 (321)
Q Consensus 149 lI~dyLlR~G~~~tA~~l~~e~-~i~~~~d~e~f~~~--~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~-s~LeF~Lr~q 224 (321)
.++..+++.|.++.|..+.++. .+. .-+.+..... ..-.-....|+.+.|++++.+--....+.+ .......+..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 4677888888888877765542 222 1222221111 111222367999999999887654433332 2333444444
Q ss_pred HHHHHHhcCChHHHHHHHHHhccc
Q 020769 225 EFIELVRGENNLRAITYARKYLAP 248 (321)
Q Consensus 225 ~fIELir~~~~~eAi~yark~l~~ 248 (321)
--.-+...|+..+|+.+.++-+.-
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~ 155 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTL 155 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 455566778999999888865543
No 33
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=36.52 E-value=2e+02 Score=24.48 Aligned_cols=98 Identities=8% Similarity=0.022 Sum_probs=52.7
Q ss_pred HHHHHHhChHHHHHHHHHHh-CCCC-cccHHHHHHHHH-HHHHH-HcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHH
Q 020769 151 VDYMLRMSYYETAEKLAESS-NIQD-LVDIEVFQEAKK-VIDAL-QNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEF 226 (321)
Q Consensus 151 ~dyLlR~G~~~tA~~l~~e~-~i~~-~~d~e~f~~~~~-I~~~L-~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~f 226 (321)
++.+++.|.++.|..+.++. .... ..+...+..... +-... ..|+.+.|+..+..--. +.....+....+.....
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~-~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN-QQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH-TCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHH-HhcccccHHHHHHHHHH
Confidence 56677777777777766543 2221 112222232222 32222 45688888887765543 22223333334444444
Q ss_pred HH--HHhcCChHHHHHHHHHhccch
Q 020769 227 IE--LVRGENNLRAITYARKYLAPW 249 (321)
Q Consensus 227 IE--Lir~~~~~eAi~yark~l~~~ 249 (321)
+= ....|+..+|+.|.++-+.-+
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~ 185 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQL 185 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 44 334678888888888877644
No 34
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=36.45 E-value=1.6e+02 Score=23.48 Aligned_cols=96 Identities=10% Similarity=0.015 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhH
Q 020769 145 RVKRILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRL 223 (321)
Q Consensus 145 ~l~rlI~dyLlR~G~~~tA~~l~~e~-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~ 223 (321)
.+-..++..+.+.|.++.|....+.. .+. ..+...+..+..+ .+..|+.+.|+.++..--. ..... ...+.
T Consensus 140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~al~---~~~~~--~~~~~ 211 (258)
T 3uq3_A 140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAA--LAKLMSFPEAIADCNKAIE---KDPNF--VRAYI 211 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHH---HCTTC--HHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHH--HHHhCCHHHHHHHHHHHHH---hCHHH--HHHHH
Confidence 34456778888889888877765543 222 2234444444333 3578999999999876532 11111 22333
Q ss_pred HHHHHHHhcCChHHHHHHHHHhccc
Q 020769 224 QEFIELVRGENNLRAITYARKYLAP 248 (321)
Q Consensus 224 q~fIELir~~~~~eAi~yark~l~~ 248 (321)
..-.-+.+.|+..+|+.+.++-+.-
T Consensus 212 ~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 212 RKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3344456678999999998876543
No 35
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=36.23 E-value=1.2e+02 Score=21.79 Aligned_cols=36 Identities=8% Similarity=0.195 Sum_probs=29.7
Q ss_pred cccccHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhc
Q 020769 47 FLRVPFEHYKKT---IRTNHRAVEKEITSVISNVADVSD 82 (321)
Q Consensus 47 ~~~vP~E~l~k~---fr~~qk~ieke~~~v~~~~~~l~~ 82 (321)
.++|.||.|+.. |+.....|+..+..+...+..+..
T Consensus 5 ~i~V~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~ 43 (98)
T 3gwk_C 5 QIKLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDE 43 (98)
T ss_dssp HBCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 478999998864 788888888899999888888855
No 36
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=35.76 E-value=2.4e+02 Score=25.11 Aligned_cols=97 Identities=8% Similarity=0.072 Sum_probs=52.6
Q ss_pred HHHHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHH----------HHHHHHHHcCChHHHHHHHHhhhhHhhhcCCh
Q 020769 148 RILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEA----------KKVIDALQNKEVAPALAWCSDNKSRLKKSKSK 216 (321)
Q Consensus 148 rlI~dyLlR~G~~~tA~~l~~e~-~i~~~~d~e~f~~~----------~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~ 216 (321)
..++..+.+.|.++.|..+.+.. .+.+ .+...+..+ ....-....|+.+.|+.++..--. +...+..
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~-~~p~~~~ 292 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK-TEPSIAE 292 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCCSSHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCcchH
Confidence 34566677778777776655443 2221 112222111 112333467888888888876532 1111222
Q ss_pred hhHHhhHHHHHHHHhcCChHHHHHHHHHhc
Q 020769 217 FEFQLRLQEFIELVRGENNLRAITYARKYL 246 (321)
Q Consensus 217 LeF~Lr~q~fIELir~~~~~eAi~yark~l 246 (321)
....++...-.-+.+.|+..+|+.+.++-+
T Consensus 293 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 322 (450)
T 2y4t_A 293 YTVRSKERICHCFSKDEKPVEAIRVCSEVL 322 (450)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 223444444455667788888888887654
No 37
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=34.69 E-value=8.2 Score=35.66 Aligned_cols=32 Identities=16% Similarity=0.378 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHhChHHHHHHHHHHhCCC
Q 020769 142 NNTRVKRILVDYMLRMSYYETAEKLAESSNIQ 173 (321)
Q Consensus 142 ~~~~l~rlI~dyLlR~G~~~tA~~l~~e~~i~ 173 (321)
.+..++|+|++||..+||.+++..|.++.+++
T Consensus 7 q~~~~~~~i~~~l~~~~~~~~~~~~~~e~~~~ 38 (410)
T 1vyh_C 7 QRDELNRAIADYLRSNGYEEAYSVFKKEAELD 38 (410)
T ss_dssp --------------------------------
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHhCCC
Confidence 45789999999999999999999999998875
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=33.93 E-value=1.8e+02 Score=23.21 Aligned_cols=97 Identities=10% Similarity=0.085 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCCh--hhHHhhH
Q 020769 147 KRILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSK--FEFQLRL 223 (321)
Q Consensus 147 ~rlI~dyLlR~G~~~tA~~l~~e~-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~--LeF~Lr~ 223 (321)
-..++..+++.|.++.|..+.++. .+. .+.+.+..+.. -....|+.+.|+.++..--..-...... .....+.
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAA--AEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHH--HHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345677888888888877755542 222 22333333332 3457899999999987654332222111 1134444
Q ss_pred HHHHHHHhcCChHHHHHHHHHhcc
Q 020769 224 QEFIELVRGENNLRAITYARKYLA 247 (321)
Q Consensus 224 q~fIELir~~~~~eAi~yark~l~ 247 (321)
..-.-+...|+..+|+.+.++-+.
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~ 107 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLT 107 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHh
Confidence 444555677889999998887665
No 39
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=32.86 E-value=41 Score=23.22 Aligned_cols=25 Identities=20% Similarity=0.469 Sum_probs=19.3
Q ss_pred HHHHHHHH---cCChHHHHHHHHhhhhH
Q 020769 185 KKVIDALQ---NKEVAPALAWCSDNKSR 209 (321)
Q Consensus 185 ~~I~~~L~---~gdi~~AL~W~~~n~~~ 209 (321)
.+++.+|+ ++|++.|++|+-+|...
T Consensus 24 ~~a~~AL~~t~~~nve~A~ewLl~~~~d 51 (64)
T 1whc_A 24 GRAEKALALTGNQGIEAAMDWLMEHEDD 51 (64)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHhCCCC
Confidence 35677774 68999999999888543
No 40
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=32.65 E-value=1.9e+02 Score=23.12 Aligned_cols=93 Identities=9% Similarity=-0.048 Sum_probs=57.8
Q ss_pred HHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhH-----HhhH
Q 020769 150 LVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEF-----QLRL 223 (321)
Q Consensus 150 I~dyLlR~G~~~tA~~l~~e~-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF-----~Lr~ 223 (321)
++..+.+.|-++.|....+.. .+. +.+.+.+..+..+. ...|+.+.|++++.+--. ....+-.+ ..+.
T Consensus 48 ~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~--~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~ 121 (228)
T 4i17_A 48 CGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAAY--RDMKNNQEYIATLTEGIK---AVPGNATIEKLYAIYYL 121 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHHH--HHcccHHHHHHHHHHHHH---HCCCcHHHHHHHHHHHH
Confidence 677778888888877765543 333 22344444444443 467999999999876532 11222222 2333
Q ss_pred HHHHHHHhcCChHHHHHHHHHhccc
Q 020769 224 QEFIELVRGENNLRAITYARKYLAP 248 (321)
Q Consensus 224 q~fIELir~~~~~eAi~yark~l~~ 248 (321)
..-.-+...|+..+|+.+.++-+.-
T Consensus 122 ~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 122 KEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHhHHHHHhccHHHHHHHHHHHHhc
Confidence 3334456779999999999987653
No 41
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=32.25 E-value=3.1e+02 Score=25.47 Aligned_cols=21 Identities=5% Similarity=-0.186 Sum_probs=13.0
Q ss_pred HHHHHHHHhChHHHHHHHHHH
Q 020769 149 ILVDYMLRMSYYETAEKLAES 169 (321)
Q Consensus 149 lI~dyLlR~G~~~tA~~l~~e 169 (321)
.++.-+.+.|.++.|..+.++
T Consensus 412 ~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 412 GFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHH
Confidence 456666667776666665543
No 42
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=32.03 E-value=19 Score=23.99 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=16.9
Q ss_pred HHHHHH--HcCChHHHHHHHHhh
Q 020769 186 KVIDAL--QNKEVAPALAWCSDN 206 (321)
Q Consensus 186 ~I~~~L--~~gdi~~AL~W~~~n 206 (321)
+++.+| .+||++.|++|+-.+
T Consensus 28 ~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 28 ANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHc
Confidence 566777 479999999999765
No 43
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=31.44 E-value=44 Score=23.31 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=17.5
Q ss_pred HHHHHH--HcCChHHHHHHHHhhh
Q 020769 186 KVIDAL--QNKEVAPALAWCSDNK 207 (321)
Q Consensus 186 ~I~~~L--~~gdi~~AL~W~~~n~ 207 (321)
...++| .+||++.|+.|+.+..
T Consensus 26 dcKkAL~e~~GDi~~Ai~~Lr~kg 49 (64)
T 2cp9_A 26 NCKKALETCGGDLKQAEIWLHKEA 49 (64)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHh
Confidence 356777 4799999999998764
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=31.39 E-value=1.8e+02 Score=22.54 Aligned_cols=94 Identities=7% Similarity=-0.139 Sum_probs=50.4
Q ss_pred HHHHHHHHHHh-ChHHHHHHHHHHh-CC-CCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhH
Q 020769 147 KRILVDYMLRM-SYYETAEKLAESS-NI-QDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRL 223 (321)
Q Consensus 147 ~rlI~dyLlR~-G~~~tA~~l~~e~-~i-~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~ 223 (321)
-..++..+... |.++.|..+.+.. .. ....+...+..+ ..-....|+.+.|++++.+--.. ..... ..+.
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~~---~~~~~--~~~~ 151 (225)
T 2vq2_A 79 NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNK--GICSAKQGQFGLAEAYLKRSLAA---QPQFP--PAFK 151 (225)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHH--HHHHHHTTCHHHHHHHHHHHHHH---STTCH--HHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHh---CCCCc--hHHH
Confidence 34566667777 7777776655543 21 112223333222 22334678888888887755321 11111 2222
Q ss_pred HHHHHHHhcCChHHHHHHHHHhcc
Q 020769 224 QEFIELVRGENNLRAITYARKYLA 247 (321)
Q Consensus 224 q~fIELir~~~~~eAi~yark~l~ 247 (321)
.--.-+.+.|+..+|+.+.++.+.
T Consensus 152 ~la~~~~~~~~~~~A~~~~~~~~~ 175 (225)
T 2vq2_A 152 ELARTKMLAGQLGDADYYFKKYQS 175 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 223334566888888888886554
No 45
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=31.21 E-value=21 Score=23.98 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=17.1
Q ss_pred HHHHHH--HcCChHHHHHHHHhh
Q 020769 186 KVIDAL--QNKEVAPALAWCSDN 206 (321)
Q Consensus 186 ~I~~~L--~~gdi~~AL~W~~~n 206 (321)
..+.+| .+||++.|++|+-.+
T Consensus 26 ~n~~AL~~~~Gdv~~Ave~L~~~ 48 (54)
T 2dah_A 26 ANLQALIATGGDVDAAVEKLRQS 48 (54)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHhC
Confidence 466777 489999999999766
No 46
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.13 E-value=44 Score=21.31 Aligned_cols=21 Identities=14% Similarity=0.246 Sum_probs=15.9
Q ss_pred HHHHHHH-cCChHHHHHHHHhh
Q 020769 186 KVIDALQ-NKEVAPALAWCSDN 206 (321)
Q Consensus 186 ~I~~~L~-~gdi~~AL~W~~~n 206 (321)
+.+.+|+ .||++.|++|+-.|
T Consensus 25 ~a~~AL~~~~n~e~A~~~L~~h 46 (47)
T 2ekk_A 25 HAMEALLNTSTMEQATEYLLTH 46 (47)
T ss_dssp HHHHHHHHSCSHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHcC
Confidence 4566663 57999999998765
No 47
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=30.43 E-value=20 Score=23.20 Aligned_cols=19 Identities=26% Similarity=0.181 Sum_probs=15.3
Q ss_pred HHHHHH--HcCChHHHHHHHH
Q 020769 186 KVIDAL--QNKEVAPALAWCS 204 (321)
Q Consensus 186 ~I~~~L--~~gdi~~AL~W~~ 204 (321)
.++.+| .+||++.|++|+-
T Consensus 24 ~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 24 RNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHH
Confidence 467777 4799999999974
No 48
>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}
Probab=30.21 E-value=3.3e+02 Score=25.18 Aligned_cols=41 Identities=12% Similarity=0.097 Sum_probs=29.4
Q ss_pred HHHHHHHHHHH--HHHHHHHHhhchHHHHHHHHHHHHHHhccc
Q 020769 92 VNHLTSLVSRL--QGLKRKLEEGSRTEHLQAQKCRARLNHLES 132 (321)
Q Consensus 92 ~~~ld~li~kl--~~lk~kl~~~~~~e~~~~~~~~~Rl~~L~~ 132 (321)
.+.++..++++ ..+|.-+++...++.+.++++..|++.|..
T Consensus 226 ~~a~e~~a~~~~d~~~~~~~~~i~~~~~~h~~~l~~~~~~~g~ 268 (365)
T 3fse_A 226 LEALEKYTEKESDVEAKALFQEMITNKQRHIEYLETYLTRLGE 268 (365)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34444455554 455666777777888999999999999983
No 49
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.98 E-value=1.6e+02 Score=21.28 Aligned_cols=94 Identities=9% Similarity=-0.012 Sum_probs=55.7
Q ss_pred HHHHHHHHHHhChHHHHHHHHHH-hCCCCccc--HHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhH
Q 020769 147 KRILVDYMLRMSYYETAEKLAES-SNIQDLVD--IEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRL 223 (321)
Q Consensus 147 ~rlI~dyLlR~G~~~tA~~l~~e-~~i~~~~d--~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~ 223 (321)
-..++..+.+.|.++.|..+.+. ..+..... ...+..+. .-.+..|+.+.|+.++..--.. . ... ...+.
T Consensus 31 ~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a--~~~~~~~~~~~A~~~~~~~~~~-~--~~~--~~~~~ 103 (148)
T 2dba_A 31 LRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRA--ACHLKLEDYDKAETEASKAIEK-D--GGD--VKALY 103 (148)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHH-T--SCC--HHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHH--HHHHHHccHHHHHHHHHHHHhh-C--ccC--HHHHH
Confidence 34567777888888887776554 34432110 22222222 2345789999999999765322 1 112 22333
Q ss_pred HHHHHHHhcCChHHHHHHHHHhcc
Q 020769 224 QEFIELVRGENNLRAITYARKYLA 247 (321)
Q Consensus 224 q~fIELir~~~~~eAi~yark~l~ 247 (321)
..-.-+...|+..+|+.+.++-+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445667899999999886654
No 50
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=29.88 E-value=22 Score=24.25 Aligned_cols=22 Identities=23% Similarity=0.223 Sum_probs=17.1
Q ss_pred HHHHHHHH--cCChHHHHHHHHhh
Q 020769 185 KKVIDALQ--NKEVAPALAWCSDN 206 (321)
Q Consensus 185 ~~I~~~L~--~gdi~~AL~W~~~n 206 (321)
..++.+|+ +||++.|++|+-.+
T Consensus 33 ~~~~~AL~~~~gnve~Ave~L~~~ 56 (58)
T 1wr1_B 33 DRNVAALRRSGGSVQGALDSLLNG 56 (58)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhC
Confidence 35677774 79999999998654
No 51
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=29.59 E-value=20 Score=25.79 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=17.5
Q ss_pred HHHHHHHH--cCChHHHHHHHHhh
Q 020769 185 KKVIDALQ--NKEVAPALAWCSDN 206 (321)
Q Consensus 185 ~~I~~~L~--~gdi~~AL~W~~~n 206 (321)
..++.+|+ +||++.|++|+-.+
T Consensus 45 ~~~~~AL~~t~Gnve~Ave~L~~~ 68 (74)
T 1vej_A 45 DANLQALVATDGDIHAAIEMLLGA 68 (74)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhC
Confidence 35677774 79999999998765
No 52
>3frr_A Uncharacterized protein KIAA0174; ESCRT, ESCRT-III, CHMP, IST1, alternative splicing, phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3frs_A
Probab=29.46 E-value=2.6e+02 Score=23.61 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCcchHHHHHh
Q 020769 285 DFLVDQFKQEFCKLYGMTLEPLLNIYLQA 313 (321)
Q Consensus 285 ~~L~~~F~~~~~~l~gl~~~s~L~~~l~a 313 (321)
..+++.+..++.+-||++.+|+-.+.-.+
T Consensus 161 ~~lv~~yL~EIA~~y~V~w~p~~~~~~~~ 189 (191)
T 3frr_A 161 KILVERYLIEIAKNYNVPYEPDSVVMAEA 189 (191)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCHHHHHTC
T ss_pred HHHHHHHHHHHHHHcCCCCCCchhhhccC
Confidence 57899999999999999999987665433
No 53
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=29.30 E-value=1.7e+02 Score=21.56 Aligned_cols=91 Identities=14% Similarity=0.051 Sum_probs=57.1
Q ss_pred HHHHHHHHhChHHHHHHHHHH-hCCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHHH
Q 020769 149 ILVDYMLRMSYYETAEKLAES-SNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFI 227 (321)
Q Consensus 149 lI~dyLlR~G~~~tA~~l~~e-~~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fI 227 (321)
-.+.-+++.|-++.|...-++ ..+. +.+.+.+..+..+. ...|+.+.|++++..-- .+.. .. ...+...-.
T Consensus 18 ~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~--~~~~~~~~A~~~~~~al-~~~p--~~--~~a~~~lg~ 89 (126)
T 4gco_A 18 NKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACL--TKLMEFQRALDDCDTCI-RLDS--KF--IKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH--HHTTCHHHHHHHHHHHH-HHCT--TC--HHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHH--HhhccHHHHHHHHHHHH-Hhhh--hh--hHHHHHHHH
Confidence 357788889988887765543 3333 23445555444433 46799999999987542 1211 11 233444455
Q ss_pred HHHhcCChHHHHHHHHHhcc
Q 020769 228 ELVRGENNLRAITYARKYLA 247 (321)
Q Consensus 228 ELir~~~~~eAi~yark~l~ 247 (321)
-+...|+..+|+.+.++-+.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 56677999999999987553
No 54
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=29.19 E-value=1.3e+02 Score=20.02 Aligned_cols=24 Identities=8% Similarity=0.362 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCh
Q 020769 65 AVEKEITSVISNVADVSDSENFSK 88 (321)
Q Consensus 65 ~ieke~~~v~~~~~~l~~~~~~~~ 88 (321)
.++|++..++.-+..+.++++++.
T Consensus 4 ~L~RDv~RaiELle~lq~sgevp~ 27 (53)
T 1zl8_A 4 NLERDVQRILELMEHVQKTGEVNN 27 (53)
T ss_dssp HHHHHHHHHHHHHHHHGGGSSSTH
T ss_pred cHHHHHHHHHHHHHHHHHcCCCCc
Confidence 478899999999999988876654
No 55
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=28.91 E-value=55 Score=22.76 Aligned_cols=22 Identities=14% Similarity=0.305 Sum_probs=17.9
Q ss_pred HHHHHHHH--cCChHHHHHHHHhh
Q 020769 185 KKVIDALQ--NKEVAPALAWCSDN 206 (321)
Q Consensus 185 ~~I~~~L~--~gdi~~AL~W~~~n 206 (321)
.+.+.+|+ +||++.|++|+-.|
T Consensus 34 ~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 34 ECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhC
Confidence 45677774 79999999999776
No 56
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=28.59 E-value=21 Score=23.69 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=16.3
Q ss_pred HHHHHHH--cCChHHHHHHHHhh
Q 020769 186 KVIDALQ--NKEVAPALAWCSDN 206 (321)
Q Consensus 186 ~I~~~L~--~gdi~~AL~W~~~n 206 (321)
+++.+|+ +||++.|++|+-.|
T Consensus 29 ~~~~AL~~t~gn~e~A~e~L~~~ 51 (52)
T 2jy5_A 29 ANLQALIATGGDINAAIERLLGS 51 (52)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCHHHHHHHHHhC
Confidence 5677774 68999999998543
No 57
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=28.58 E-value=2.6e+02 Score=23.30 Aligned_cols=96 Identities=20% Similarity=0.058 Sum_probs=51.8
Q ss_pred HHHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCC----hhhHHhhH
Q 020769 149 ILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKS----KFEFQLRL 223 (321)
Q Consensus 149 lI~dyLlR~G~~~tA~~l~~e~-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s----~LeF~Lr~ 223 (321)
.++..+.+.|.++.|..+.+.. .+. ..+...+..+.. -....|+.+.|+.++.+--....+... +-...++.
T Consensus 164 ~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (330)
T 3hym_B 164 YIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGV--VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN 240 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHH--HHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHH
Confidence 3666667777777776655543 332 222333333322 234678888888888765443322111 11112223
Q ss_pred HHHHHHHhcCChHHHHHHHHHhcc
Q 020769 224 QEFIELVRGENNLRAITYARKYLA 247 (321)
Q Consensus 224 q~fIELir~~~~~eAi~yark~l~ 247 (321)
.--.-+.+.|+..+|+.+.++-+.
T Consensus 241 ~la~~~~~~g~~~~A~~~~~~a~~ 264 (330)
T 3hym_B 241 NLGHVCRKLKKYAEALDYHRQALV 264 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHh
Confidence 333334567888888888886654
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=28.45 E-value=2e+02 Score=22.00 Aligned_cols=95 Identities=12% Similarity=-0.043 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHhChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHH
Q 020769 146 VKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQE 225 (321)
Q Consensus 146 l~rlI~dyLlR~G~~~tA~~l~~e~~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~ 225 (321)
....++..+...|.++.|.......--....+.+.+..+..+ ....|+.+.|++++..-- ...... ...+..-
T Consensus 75 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~--~~~~g~~~~A~~~~~~~l---~~~p~~--~~~~~~l 147 (184)
T 3vtx_A 75 AYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLV--YDSMGEHDKAIEAYEKTI---SIKPGF--IRAYQSI 147 (184)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHH---HHCTTC--HHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHH--HHHhCCchhHHHHHHHHH---Hhcchh--hhHHHHH
Confidence 334566777777877777665554321122334444444333 346799999999887542 111111 2233334
Q ss_pred HHHHHhcCChHHHHHHHHHhcc
Q 020769 226 FIELVRGENNLRAITYARKYLA 247 (321)
Q Consensus 226 fIELir~~~~~eAi~yark~l~ 247 (321)
-.-+.+.|+..+|+.+.++-+.
T Consensus 148 g~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 148 GLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHh
Confidence 4456678999999999987654
No 59
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=28.28 E-value=1.6e+02 Score=21.01 Aligned_cols=57 Identities=11% Similarity=0.091 Sum_probs=35.0
Q ss_pred HHHcCChHHHHHHHHhhhhHhhhcC--ChhhHHhhHHHHHHHHhcCChHHHHHHHHHhc
Q 020769 190 ALQNKEVAPALAWCSDNKSRLKKSK--SKFEFQLRLQEFIELVRGENNLRAITYARKYL 246 (321)
Q Consensus 190 ~L~~gdi~~AL~W~~~n~~~L~k~~--s~LeF~Lr~q~fIELir~~~~~eAi~yark~l 246 (321)
....|+...|+.|...--....... ..-.-.++.+--.-+.+.|+..+|+.+.++-+
T Consensus 15 ~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 15 AYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3478899999999877654443221 11112333333444567789999999888654
No 60
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.61 E-value=45 Score=22.51 Aligned_cols=21 Identities=24% Similarity=0.235 Sum_probs=15.2
Q ss_pred HHHHHHH-cCC--hHHHHHHHHhh
Q 020769 186 KVIDALQ-NKE--VAPALAWCSDN 206 (321)
Q Consensus 186 ~I~~~L~-~gd--i~~AL~W~~~n 206 (321)
+...+|+ .|+ +++|++|+..-
T Consensus 25 rae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 25 MAGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHh
Confidence 5666774 455 99999998753
No 61
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.41 E-value=58 Score=22.24 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=18.6
Q ss_pred HHHHHHH--cCChHHHHHHHHhhhhH
Q 020769 186 KVIDALQ--NKEVAPALAWCSDNKSR 209 (321)
Q Consensus 186 ~I~~~L~--~gdi~~AL~W~~~n~~~ 209 (321)
+.+.+|+ ++|++.|++|+-.|.+.
T Consensus 25 ~a~~AL~~t~~nve~A~e~L~~~~~d 50 (63)
T 2dak_A 25 QALKALRATNNSLERAVDWIFSHIDD 50 (63)
T ss_dssp HHHHHHHHTTSCSHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCHHHHHHHHHhCCCC
Confidence 4666664 57899999999888654
No 62
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=26.87 E-value=2.5e+02 Score=22.69 Aligned_cols=75 Identities=9% Similarity=0.173 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcc---CCCChHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhccc
Q 020769 58 TIRTNHRAVEKEITSVISNVADVSDS---ENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHLES 132 (321)
Q Consensus 58 ~fr~~qk~ieke~~~v~~~~~~l~~~---~~~~~~~~~~~ld~li~kl~~lk~kl~~~~~~e~~~~~~~~~Rl~~L~~ 132 (321)
.|...++.+-+.+-.-.+.|..+-.+ .+.+.++..+.|..+-+......+++.+.+.+-+..++++..-+.-+.+
T Consensus 54 ~f~~~~~ela~dli~kakqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~v~eae~ll~~v~~~l~~ia~ 131 (151)
T 1yke_B 54 EFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLLRHVDSLIEDFVD 131 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666654444444444444332 2457888999999999999999999999998888999999888887764
No 63
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=26.83 E-value=1.1e+02 Score=27.84 Aligned_cols=51 Identities=16% Similarity=0.153 Sum_probs=36.9
Q ss_pred HcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHHHHHHhcCChHHHHHHHHHh
Q 020769 192 QNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFIELVRGENNLRAITYARKY 245 (321)
Q Consensus 192 ~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fIELir~~~~~eAi~yark~ 245 (321)
..|+++.|+.||.+. +....+.-..+++....--+++.|+...|.+..++.
T Consensus 112 ~~g~~eeAL~~l~~~---i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 112 ILGDLDKSLETCVEG---IDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp HHTCHHHHHHHHHHH---HTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH---hccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 369999999999876 222222355566666666677889999999999853
No 64
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=26.77 E-value=34 Score=34.77 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhChHHHHHHHHHHhC
Q 020769 147 KRILVDYMLRMSYYETAEKLAESSN 171 (321)
Q Consensus 147 ~rlI~dyLlR~G~~~tA~~l~~e~~ 171 (321)
-|.++.|++|+|+.+.|..++++.+
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~~ 179 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVENK 179 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTG
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhh
Confidence 4589999999999999999998775
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=26.65 E-value=1.6e+02 Score=26.00 Aligned_cols=60 Identities=15% Similarity=0.200 Sum_probs=41.8
Q ss_pred HHcCChHHHHHHHHhhhhHhhhcCChh-hHHhhHHHHHHHHhcCChHHHHHHHHHhccchh
Q 020769 191 LQNKEVAPALAWCSDNKSRLKKSKSKF-EFQLRLQEFIELVRGENNLRAITYARKYLAPWG 250 (321)
Q Consensus 191 L~~gdi~~AL~W~~~n~~~L~k~~s~L-eF~Lr~q~fIELir~~~~~eAi~yark~l~~~~ 250 (321)
...|+.+.|+.++.+--....+.+... .-..+..--.-....|+..+|+.|.++-+.-+.
T Consensus 114 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~ 174 (383)
T 3ulq_A 114 LDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYK 174 (383)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 467888888888887766555554443 445555555556677888899998888876543
No 66
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=26.46 E-value=1.8e+02 Score=20.83 Aligned_cols=92 Identities=12% Similarity=0.002 Sum_probs=55.4
Q ss_pred HHHHHHHHHhChHHHHHHHHHH-hCCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHH
Q 020769 148 RILVDYMLRMSYYETAEKLAES-SNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEF 226 (321)
Q Consensus 148 rlI~dyLlR~G~~~tA~~l~~e-~~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~f 226 (321)
..++..++..|-++.|....+. ..+. ..+.+.+..+..+ ....|+.+.|+.++..--. +. .. ....+..--
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~al~-~~--p~--~~~~~~~l~ 84 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALC--YLKMQQPEQALADCRRALE-LD--GQ--SVKAHFFLG 84 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHH-HC--TT--CHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHH--HHHhcCHHHHHHHHHHHHH-hC--ch--hHHHHHHHH
Confidence 4567777788887777765543 2332 2233444433333 3468999999999875532 11 11 223334444
Q ss_pred HHHHhcCChHHHHHHHHHhcc
Q 020769 227 IELVRGENNLRAITYARKYLA 247 (321)
Q Consensus 227 IELir~~~~~eAi~yark~l~ 247 (321)
.-+...|+..+|+.+.++-+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHH
Confidence 456677999999999987654
No 67
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=26.34 E-value=2.9e+02 Score=23.18 Aligned_cols=22 Identities=5% Similarity=0.033 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhChHHHHHHHHH
Q 020769 147 KRILVDYMLRMSYYETAEKLAE 168 (321)
Q Consensus 147 ~rlI~dyLlR~G~~~tA~~l~~ 168 (321)
...++..+.+.|.++.|....+
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~ 178 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLK 178 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHH
Confidence 3445555556665555555444
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=26.23 E-value=3.3e+02 Score=23.84 Aligned_cols=101 Identities=14% Similarity=0.051 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhChHHHHHHHHHHh-CC----CCcc-cHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCC--h
Q 020769 145 RVKRILVDYMLRMSYYETAEKLAESS-NI----QDLV-DIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKS--K 216 (321)
Q Consensus 145 ~l~rlI~dyLlR~G~~~tA~~l~~e~-~i----~~~~-d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s--~ 216 (321)
......+.++.+.|.++.|..+.+++ .+ .+.. ..+.+..+..+. ...|+.+.|+.++.+--.-..+.+. .
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~--~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESY--YYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 34455778888888888887766553 33 1111 112222222222 2578888888888776544443322 1
Q ss_pred hhHHhhHHHHHHHHhcCChHHHHHHHHHhcc
Q 020769 217 FEFQLRLQEFIELVRGENNLRAITYARKYLA 247 (321)
Q Consensus 217 LeF~Lr~q~fIELir~~~~~eAi~yark~l~ 247 (321)
.....+..--.-+...|+..+|+.|.++-+.
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 212 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYS 212 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 1111122222223445677777777665553
No 69
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=25.97 E-value=3.6e+02 Score=26.53 Aligned_cols=17 Identities=47% Similarity=0.517 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhhc
Q 020769 97 SLVSRLQGLKRKLEEGS 113 (321)
Q Consensus 97 ~li~kl~~lk~kl~~~~ 113 (321)
.|=.+++.||++++..+
T Consensus 114 ELRRrIqyLKekVdnQl 130 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKV 130 (562)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44455555555555544
No 70
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=25.82 E-value=1.8e+02 Score=20.70 Aligned_cols=91 Identities=9% Similarity=-0.014 Sum_probs=55.4
Q ss_pred HHHHHHHHhChHHHHHHHHHH-hCCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHHH
Q 020769 149 ILVDYMLRMSYYETAEKLAES-SNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFI 227 (321)
Q Consensus 149 lI~dyLlR~G~~~tA~~l~~e-~~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fI 227 (321)
..+..+++.|-++.|....++ ..+. .-+...+..+..+ .+..|+.+.|+.++..--. +. ... ...+...-.
T Consensus 9 ~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~--~~~~~~~~~A~~~~~~al~-~~--p~~--~~~~~~lg~ 80 (126)
T 3upv_A 9 LEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAA--LAKLMSFPEAIADCNKAIE-KD--PNF--VRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHH-HC--TTC--HHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHH--HHHhcCHHHHHHHHHHHHH-hC--CCc--HHHHHHHHH
Confidence 456677788877777765543 2332 2234444444333 3468999999999876421 11 111 233444455
Q ss_pred HHHhcCChHHHHHHHHHhcc
Q 020769 228 ELVRGENNLRAITYARKYLA 247 (321)
Q Consensus 228 ELir~~~~~eAi~yark~l~ 247 (321)
-+...|+..+|+.+.++-+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 56677999999999987654
No 71
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=25.13 E-value=1.7e+02 Score=20.19 Aligned_cols=94 Identities=12% Similarity=0.077 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHH
Q 020769 146 VKRILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQ 224 (321)
Q Consensus 146 l~rlI~dyLlR~G~~~tA~~l~~e~-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q 224 (321)
.-..++..+.+.|.++.|..+.+.. .+. ..+...+..+..+ ....|+.+.|+.++..--.. .... ...+..
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~--~~~~~~~~~A~~~~~~~~~~---~~~~--~~~~~~ 85 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAA--YSKLGNYAGAVQDCERAICI---DPAY--SKAYGR 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHH---CTTC--HHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHH--HHHhhchHHHHHHHHHHHhc---CccC--HHHHHH
Confidence 3345667777888887777755543 222 1223333333333 35789999999998765432 1111 223333
Q ss_pred HHHHHHhcCChHHHHHHHHHhcc
Q 020769 225 EFIELVRGENNLRAITYARKYLA 247 (321)
Q Consensus 225 ~fIELir~~~~~eAi~yark~l~ 247 (321)
.-.-+.+.|+..+|+.+.++-+.
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 33345667899999998886543
No 72
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.89 E-value=67 Score=22.08 Aligned_cols=23 Identities=17% Similarity=0.124 Sum_probs=17.7
Q ss_pred HHHHHHH--cCChHHHHHHHHhhhh
Q 020769 186 KVIDALQ--NKEVAPALAWCSDNKS 208 (321)
Q Consensus 186 ~I~~~L~--~gdi~~AL~W~~~n~~ 208 (321)
+.+.+|+ ++|++.|++|+-.+..
T Consensus 25 ~a~~AL~~~~~nve~A~e~L~~~~~ 49 (63)
T 1wji_A 25 ASRQALMDNGNNLEAALNVLLTSNK 49 (63)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 4566774 6899999999988753
No 73
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=24.85 E-value=3.5e+02 Score=23.62 Aligned_cols=61 Identities=15% Similarity=0.172 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHhCCCC------cccH--------HHHHH-HHHHHHHHHcCChHHHHHHHH
Q 020769 144 TRVKRILVDYMLRMSYYETAEKLAESSNIQD------LVDI--------EVFQE-AKKVIDALQNKEVAPALAWCS 204 (321)
Q Consensus 144 ~~l~rlI~dyLlR~G~~~tA~~l~~e~~i~~------~~d~--------e~f~~-~~~I~~~L~~gdi~~AL~W~~ 204 (321)
..+--+...|++..|-.-+-+.+.+..|+.. .++. |...+ ++-..+++..||.+.|..-|.
T Consensus 112 E~VEA~~f~~yL~~~~L~t~eev~~~L~~~~~~~~~f~v~~edYLlGL~DLtGEL~R~ain~v~~Gd~~~~~~i~~ 187 (249)
T 3axj_A 112 RLIFIIALVIYLEAGFLVTRETVAEMLGLKISQSEGFHLDVEDYLLGILQLASELSRFATNSVTMGDYERPLNISH 187 (249)
T ss_dssp HHHHHHHHHHHHHHSSCCCHHHHHHHHTCBSSTTTSSBCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHhccccCCCcccccCHHHHHHHHHHHHhHHHHHHHHHHhcCChHHHHHHHH
Confidence 5566667777778775444555555444421 1332 33334 556789999999998865554
No 74
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=24.59 E-value=69 Score=19.21 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=12.9
Q ss_pred HHHHHH--cCChHHHHHHH
Q 020769 187 VIDALQ--NKEVAPALAWC 203 (321)
Q Consensus 187 I~~~L~--~gdi~~AL~W~ 203 (321)
.+.+|+ +||++.|++|+
T Consensus 21 a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 21 AAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH
Confidence 455553 78999999996
No 75
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=24.33 E-value=2e+02 Score=20.63 Aligned_cols=106 Identities=16% Similarity=-0.002 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHh-CCC-CcccHHH--HHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCCh-hh
Q 020769 144 TRVKRILVDYMLRMSYYETAEKLAESS-NIQ-DLVDIEV--FQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSK-FE 218 (321)
Q Consensus 144 ~~l~rlI~dyLlR~G~~~tA~~l~~e~-~i~-~~~d~e~--f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~-Le 218 (321)
..+-..++..+...|.++.|....++. .+. ...+... ..-...-.-....|+.+.|++++.+--......+.. ..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 445567788888888887777655432 111 0111111 111222223347899999999998765554443322 22
Q ss_pred HHhhHHHHHHHHhcCChHHHHHHHHHhccch
Q 020769 219 FQLRLQEFIELVRGENNLRAITYARKYLAPW 249 (321)
Q Consensus 219 F~Lr~q~fIELir~~~~~eAi~yark~l~~~ 249 (321)
...+..--.-+...|+..+|+.|.++-+.-.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 119 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 119 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3333333334556789999999998766443
No 76
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=23.85 E-value=2.5e+02 Score=21.54 Aligned_cols=104 Identities=10% Similarity=-0.108 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHh-C----CCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcC-Ch-
Q 020769 144 TRVKRILVDYMLRMSYYETAEKLAESS-N----IQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSK-SK- 216 (321)
Q Consensus 144 ~~l~rlI~dyLlR~G~~~tA~~l~~e~-~----i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~-s~- 216 (321)
..+-..++....+.|.++.|..+.++. . ..+.. .....-.+.-.-....|+.+.|++++.+--....+.+ ..
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT-AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 445556777788888887776655442 1 11111 1111111112223478999999999988766655544 22
Q ss_pred hhHHhhHHHHHHHHhcCChHHHHHHHHHhccc
Q 020769 217 FEFQLRLQEFIELVRGENNLRAITYARKYLAP 248 (321)
Q Consensus 217 LeF~Lr~q~fIELir~~~~~eAi~yark~l~~ 248 (321)
.....+..--.-+...|+..+|+.|.++-+.-
T Consensus 105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 105 AASANAYEVATVALHFGDLAGARQEYEKSLVY 136 (203)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33333344444456679999999999876643
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=23.55 E-value=2.3e+02 Score=21.00 Aligned_cols=91 Identities=14% Similarity=0.017 Sum_probs=37.2
Q ss_pred HHHHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHH
Q 020769 148 RILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEF 226 (321)
Q Consensus 148 rlI~dyLlR~G~~~tA~~l~~e~-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~f 226 (321)
..++..+.+.|.++.|..+.+.. .+. ..+...+..+. .-....|+.+.|++++..-... .... ...+...-
T Consensus 46 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a--~~~~~~~~~~~A~~~~~~~~~~---~~~~--~~~~~~~a 117 (186)
T 3as5_A 46 LHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLG--LTYVQVQKYDLAVPLLIKVAEA---NPIN--FNVRFRLG 117 (186)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH--HHHHHHTCHHHHHHHHHHHHHH---CTTC--HHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHH--HHHHHhcCHHHHHHHHHHHHhc---CcHh--HHHHHHHH
Confidence 34455555566555555544332 111 11122222221 1223456666666665543221 0111 11112222
Q ss_pred HHHHhcCChHHHHHHHHHhc
Q 020769 227 IELVRGENNLRAITYARKYL 246 (321)
Q Consensus 227 IELir~~~~~eAi~yark~l 246 (321)
.-+.+.|+..+|+.+.++-+
T Consensus 118 ~~~~~~~~~~~A~~~~~~~~ 137 (186)
T 3as5_A 118 VALDNLGRFDEAIDSFKIAL 137 (186)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHH
Confidence 22344566666666665443
No 78
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=23.45 E-value=2.7e+02 Score=21.87 Aligned_cols=74 Identities=9% Similarity=0.192 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcc---CCCChHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhc
Q 020769 57 KTIRTNHRAVEKEITSVISNVADVSDS---ENFSKDDAVNHLTSLVSRLQGLKRKLEEGSRTEHLQAQKCRARLNHL 130 (321)
Q Consensus 57 k~fr~~qk~ieke~~~v~~~~~~l~~~---~~~~~~~~~~~ld~li~kl~~lk~kl~~~~~~e~~~~~~~~~Rl~~L 130 (321)
..|...++.+-+.+-.-.+.|..+-.+ .+.+.++..+.|..+-+......+++.+.+.+-+..+.++..-+..+
T Consensus 53 ~~f~~~~~ela~dli~k~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~l~~i 129 (132)
T 1ykh_B 53 EEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDSMIEDF 129 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777676654444444444444332 14578889999999999999999999998888888888887776654
No 79
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=23.34 E-value=2.2e+02 Score=20.85 Aligned_cols=95 Identities=9% Similarity=-0.007 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhH
Q 020769 145 RVKRILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRL 223 (321)
Q Consensus 145 ~l~rlI~dyLlR~G~~~tA~~l~~e~-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~ 223 (321)
..-..++..+.+.|.++.|....+.. .+. ..+.+.+..+.. -....|+.+.|+.++..--.. .... ...+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~--~~~~~~~~~~A~~~~~~a~~~---~~~~--~~~~~ 85 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSL--AYLRTECYGYALGDATRAIEL---DKKY--IKGYY 85 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHH---CTTC--HHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHH--HHHHcCCHHHHHHHHHHHHHh---Cccc--HHHHH
Confidence 34455677778888888877755542 222 222343333333 235789999999998765322 1111 22333
Q ss_pred HHHHHHHhcCChHHHHHHHHHhcc
Q 020769 224 QEFIELVRGENNLRAITYARKYLA 247 (321)
Q Consensus 224 q~fIELir~~~~~eAi~yark~l~ 247 (321)
..-.-+.+.|+..+|+.+.++-+.
T Consensus 86 ~~a~~~~~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 86 RRAASNMALGKFRAALRDYETVVK 109 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHH
Confidence 334445677999999999987654
No 80
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=23.11 E-value=2.8e+02 Score=21.87 Aligned_cols=91 Identities=11% Similarity=0.033 Sum_probs=40.8
Q ss_pred HHHHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHH
Q 020769 148 RILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEF 226 (321)
Q Consensus 148 rlI~dyLlR~G~~~tA~~l~~e~-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~f 226 (321)
..++..+.+.|.++.|..+.++. .+. ..+.+.+..+.. -.+..|+.+.|+.++.+-... ..... ..+..-.
T Consensus 129 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~---~~~~~--~~~~~la 200 (243)
T 2q7f_A 129 YMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGM--CLANEGMLDEALSQFAAVTEQ---DPGHA--DAFYNAG 200 (243)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH--HHHHHTCCHHHHHHHHHHHHH---CTTCH--HHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHh---CcccH--HHHHHHH
Confidence 34555666666666666554432 111 112222222222 223566777777766543211 11111 1122222
Q ss_pred HHHHhcCChHHHHHHHHHhc
Q 020769 227 IELVRGENNLRAITYARKYL 246 (321)
Q Consensus 227 IELir~~~~~eAi~yark~l 246 (321)
.-+.+.|+..+|+.+.++.+
T Consensus 201 ~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 201 VTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHH
Confidence 22344566677776666544
No 81
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=23.07 E-value=78 Score=19.59 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=15.5
Q ss_pred HHHHHHH--cCChHHHHHHHHhh
Q 020769 186 KVIDALQ--NKEVAPALAWCSDN 206 (321)
Q Consensus 186 ~I~~~L~--~gdi~~AL~W~~~n 206 (321)
+.+.+|+ +||++.|++|+-.|
T Consensus 20 ~a~~AL~~~~~n~e~A~~~L~~~ 42 (43)
T 2g3q_A 20 EAHNALEKCNWDLEAATNFLLDS 42 (43)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHTC
T ss_pred HHHHHHHHhCcCHHHHHHHHHcC
Confidence 3555663 78999999998654
No 82
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=22.74 E-value=2.8e+02 Score=21.70 Aligned_cols=93 Identities=10% Similarity=-0.122 Sum_probs=54.2
Q ss_pred HHHHHHHHHhChHHHHHHHHHHh-CCCC-cc---cH-----------HHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhh
Q 020769 148 RILVDYMLRMSYYETAEKLAESS-NIQD-LV---DI-----------EVFQEAKKVIDALQNKEVAPALAWCSDNKSRLK 211 (321)
Q Consensus 148 rlI~dyLlR~G~~~tA~~l~~e~-~i~~-~~---d~-----------e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~ 211 (321)
..++..+++.|.++.|..+.++. .+.. .. .. ..+..+ -.-.+..|+.+.|+.+|..--.. .
T Consensus 42 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--a~~~~~~~~~~~A~~~~~~al~~-~ 118 (198)
T 2fbn_A 42 KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL--ATCYNKNKDYPKAIDHASKVLKI-D 118 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH--HHHHHHTTCHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH--HHHHHHhcCHHHHHHHHHHHHHh-C
Confidence 35677888888888877755543 2211 11 00 222222 22234789999999999865322 1
Q ss_pred hcCChhhHHhhHHHHHHHHhcCChHHHHHHHHHhcc
Q 020769 212 KSKSKFEFQLRLQEFIELVRGENNLRAITYARKYLA 247 (321)
Q Consensus 212 k~~s~LeF~Lr~q~fIELir~~~~~eAi~yark~l~ 247 (321)
... ...+...-.-+...|+..+|+.+.++-+.
T Consensus 119 --p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 119 --KNN--VKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp --TTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --ccc--HHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 111 22333334445667999999999987653
No 83
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=22.39 E-value=3e+02 Score=21.95 Aligned_cols=67 Identities=12% Similarity=0.165 Sum_probs=44.0
Q ss_pred cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC--CCChHHHHHHHHHHHHHHHHHHHHHHh
Q 020769 45 HQFLRVPFEHYKKTIRTNHRAVEKEITSVISNVADVSDSE--NFSKDDAVNHLTSLVSRLQGLKRKLEE 111 (321)
Q Consensus 45 ~~~~~vP~E~l~k~fr~~qk~ieke~~~v~~~~~~l~~~~--~~~~~~~~~~ld~li~kl~~lk~kl~~ 111 (321)
-..+|.-.+.+.|+|-.+++.+-|.-..-....-++.+.. ..+-.+....++.+.+.+..|++.++.
T Consensus 62 i~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKELEd 130 (167)
T 4gkw_A 62 IGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTETIGILRKELEN 130 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3456777888889998888888886655544444443321 123344556677777777888888765
No 84
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=22.11 E-value=76 Score=22.47 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=17.4
Q ss_pred HHHHHHH--cCChHHHHHHHHhhh
Q 020769 186 KVIDALQ--NKEVAPALAWCSDNK 207 (321)
Q Consensus 186 ~I~~~L~--~gdi~~AL~W~~~n~ 207 (321)
+++.+|+ +||++.|++|+-.|.
T Consensus 45 ~a~~AL~~t~~nve~Ave~L~~~~ 68 (73)
T 1wiv_A 45 VARKALKASGGDIEKATDWVFNNS 68 (73)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHSC
T ss_pred HHHHHHHHhCCCHHHHHHHHHhCC
Confidence 4667774 689999999998764
No 85
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=22.09 E-value=2.8e+02 Score=21.49 Aligned_cols=92 Identities=10% Similarity=-0.038 Sum_probs=58.1
Q ss_pred HHHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHHH
Q 020769 149 ILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFI 227 (321)
Q Consensus 149 lI~dyLlR~G~~~tA~~l~~e~-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fI 227 (321)
.++..+++.|.++.|....+.. .++ +-+.+.+..+..+. ...|+.+.|++.+..-- .+...+.... ..--.
T Consensus 41 ~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~--~~~g~~~~Ai~~~~~al-~l~P~~~~~~----~~lg~ 112 (151)
T 3gyz_A 41 SYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIY--QIKEQFQQAADLYAVAF-ALGKNDYTPV----FHTGQ 112 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH--HHTTCHHHHHHHHHHHH-HHSSSCCHHH----HHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH--HHHccHHHHHHHHHHHH-hhCCCCcHHH----HHHHH
Confidence 4566778889888887765543 333 33445554444433 36799999999887552 2222223333 33345
Q ss_pred HHHhcCChHHHHHHHHHhccc
Q 020769 228 ELVRGENNLRAITYARKYLAP 248 (321)
Q Consensus 228 ELir~~~~~eAi~yark~l~~ 248 (321)
-+.+.|+..+|+.+.++-+.-
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 566789999999999976654
No 86
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.98 E-value=72 Score=20.61 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=17.3
Q ss_pred HHHHHHHH--cCChHHHHHHHHhh
Q 020769 185 KKVIDALQ--NKEVAPALAWCSDN 206 (321)
Q Consensus 185 ~~I~~~L~--~gdi~~AL~W~~~n 206 (321)
.+++.+|+ .+|++.|++|+-.+
T Consensus 23 ~~a~~AL~~~~~n~e~A~e~L~~g 46 (49)
T 1ify_A 23 ERVVAALRASYNNPHRAVEYLLTG 46 (49)
T ss_dssp HHHHHHHHTTTSCSHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHhC
Confidence 35778885 57999999998654
No 87
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=21.95 E-value=3.5e+02 Score=22.61 Aligned_cols=24 Identities=13% Similarity=-0.025 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHhChHHHHHHHHHH
Q 020769 146 VKRILVDYMLRMSYYETAEKLAES 169 (321)
Q Consensus 146 l~rlI~dyLlR~G~~~tA~~l~~e 169 (321)
.....+..+...|.++.|..+.+.
T Consensus 122 ~~~~~a~~~~~~~~~~~A~~~~~~ 145 (359)
T 3ieg_A 122 RLRSQALDAFDGADYTAAITFLDK 145 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHH
Confidence 344456777788877777765554
No 88
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=21.87 E-value=3.3e+02 Score=22.29 Aligned_cols=102 Identities=12% Similarity=-0.047 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhChHHHHHHHHHHh-CC-------CCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhc---
Q 020769 145 RVKRILVDYMLRMSYYETAEKLAESS-NI-------QDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKS--- 213 (321)
Q Consensus 145 ~l~rlI~dyLlR~G~~~tA~~l~~e~-~i-------~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~--- 213 (321)
..-..++..+.+.|.++.|..+.++. .+ ........+..+.. -....|+.+.|+.++.+--....+.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILAL--VYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHH--HHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH--HHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 44456778888899888877755542 11 12211222222222 2346899999999998765443222
Q ss_pred CChhhHHhhHHHHHHHHhcCChHHHHHHHHHhccc
Q 020769 214 KSKFEFQLRLQEFIELVRGENNLRAITYARKYLAP 248 (321)
Q Consensus 214 ~s~LeF~Lr~q~fIELir~~~~~eAi~yark~l~~ 248 (321)
+.......+..--.-+...|+..+|+.+.++-+.-
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 140 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 140 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH
Confidence 22333344444444456678999999999876654
No 89
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.82 E-value=89 Score=22.76 Aligned_cols=23 Identities=26% Similarity=0.510 Sum_probs=17.8
Q ss_pred HHHHHHH--cCChHHHHHHHHhhhh
Q 020769 186 KVIDALQ--NKEVAPALAWCSDNKS 208 (321)
Q Consensus 186 ~I~~~L~--~gdi~~AL~W~~~n~~ 208 (321)
+.+.+|+ ++|++.|++|+-+|..
T Consensus 45 ~a~~AL~~t~~nve~A~ewL~~~~~ 69 (83)
T 2dai_A 45 RATKALQLNHMSVPQAMEWLIEHAE 69 (83)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHCCC
Confidence 4566664 6899999999998854
No 90
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=21.68 E-value=81 Score=22.99 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=18.6
Q ss_pred HHHHHHHH---cCChHHHHHHHHhhhh
Q 020769 185 KKVIDALQ---NKEVAPALAWCSDNKS 208 (321)
Q Consensus 185 ~~I~~~L~---~gdi~~AL~W~~~n~~ 208 (321)
.+++.+|+ ++|++.|++|+-+|..
T Consensus 44 ~~a~~AL~~t~n~n~e~A~ewL~~h~~ 70 (84)
T 1vek_A 44 LHCQKAAINTSNAGVEEAMNWLLSHMD 70 (84)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHhCCC
Confidence 45777764 4689999999998854
No 91
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=21.55 E-value=2e+02 Score=19.73 Aligned_cols=91 Identities=11% Similarity=0.055 Sum_probs=50.3
Q ss_pred HHHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCChhhHHhhHHHHH
Q 020769 149 ILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFI 227 (321)
Q Consensus 149 lI~dyLlR~G~~~tA~~l~~e~-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fI 227 (321)
.++..+.+.|.++.|..+.++. .+. ..+...+..+ ..-....|+.+.|+.++.+-... . .... ..+..--.
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~--a~~~~~~~~~~~A~~~~~~~~~~-~--~~~~--~~~~~l~~ 77 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNL--GNAYYKQGDYDEAIEYYQKALEL-D--PRSA--EAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH--HHHHHHHTCHHHHHHHHHHHHHH-C--TTCH--HHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHH--HHHHHHhcCHHHHHHHHHHHHHH-C--CCch--HHHHHHHH
Confidence 4567777888888777755543 221 1123333222 22234678999999988764321 1 1111 11222223
Q ss_pred HHHhcCChHHHHHHHHHhcc
Q 020769 228 ELVRGENNLRAITYARKYLA 247 (321)
Q Consensus 228 ELir~~~~~eAi~yark~l~ 247 (321)
-+.+.|+..+|+.+.++-+.
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~ 97 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALE 97 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHH
Confidence 34567889999988886543
No 92
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=21.46 E-value=1.2e+02 Score=19.03 Aligned_cols=19 Identities=16% Similarity=0.282 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 020769 64 RAVEKEITSVISNVADVSD 82 (321)
Q Consensus 64 k~ieke~~~v~~~~~~l~~ 82 (321)
..+|.|+..+.+.-..+++
T Consensus 6 aqlenevaslenenetlkk 24 (49)
T 3he5_A 6 AQLENEVASLENENETLKK 24 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccHHHHH
Confidence 3566777776665555544
No 93
>2eap_A Lymphocyte cytosolic protein 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.45 E-value=79 Score=23.56 Aligned_cols=32 Identities=25% Similarity=0.603 Sum_probs=25.3
Q ss_pred hhhhcHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCC
Q 020769 138 LAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQD 174 (321)
Q Consensus 138 ~~~w~~~~l~rlI~dyLlR~G~~~tA~~l~~e~~i~~ 174 (321)
...|+... +++||-+.||.+ ++.|++...|+.
T Consensus 19 V~~Wsp~~----VadWLkk~g~~~-cd~lv~Kh~IDG 50 (90)
T 2eap_A 19 VLGWDPDS----LADYFKKLNYKD-CEKAVKKYHIDG 50 (90)
T ss_dssp HTTCCTTT----HHHHHHHTTCHH-HHHHHHHTTCCH
T ss_pred ccccCHHH----HHHHHHHcCCch-HHHHHHHhccCc
Confidence 35677665 478999999999 899998887763
No 94
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=21.42 E-value=67 Score=25.05 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=17.5
Q ss_pred HHHHHHHH--cCChHHHHHHHHh
Q 020769 185 KKVIDALQ--NKEVAPALAWCSD 205 (321)
Q Consensus 185 ~~I~~~L~--~gdi~~AL~W~~~ 205 (321)
.+|+++|+ +||++.|++|+-.
T Consensus 91 ~~a~~AL~~~~nd~erAlewL~~ 113 (118)
T 4ae4_A 91 KDIKEVLLLHNNDQDNALEDLMA 113 (118)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 46889985 7899999999854
No 95
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.34 E-value=76 Score=21.81 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=17.6
Q ss_pred HHHHHHHH--cC-ChHHHHHHHHhhh
Q 020769 185 KKVIDALQ--NK-EVAPALAWCSDNK 207 (321)
Q Consensus 185 ~~I~~~L~--~g-di~~AL~W~~~n~ 207 (321)
.+++.+|+ .+ |++.|++|+-+|.
T Consensus 34 ~~a~~AL~~t~~~nve~A~ewL~~~~ 59 (64)
T 2cpw_A 34 ARAQKALASTGGRSVQTACDWLFSHS 59 (64)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHSCC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHhCC
Confidence 46777775 44 8999999998764
No 96
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=21.20 E-value=82 Score=21.71 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=18.4
Q ss_pred HHHHHHHH---cCChHHHHHHHHhhhh
Q 020769 185 KKVIDALQ---NKEVAPALAWCSDNKS 208 (321)
Q Consensus 185 ~~I~~~L~---~gdi~~AL~W~~~n~~ 208 (321)
.+++++|. +.+++.|++|+-+|..
T Consensus 24 ~~a~~AL~~t~n~~~e~A~~wL~~h~~ 50 (64)
T 2crn_A 24 HTALKALAATGRKTAEEALAWLHDHCN 50 (64)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCCC
Confidence 46777775 3389999999998854
No 97
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=20.87 E-value=3e+02 Score=21.40 Aligned_cols=116 Identities=10% Similarity=-0.003 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcC----------
Q 020769 146 VKRILVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSK---------- 214 (321)
Q Consensus 146 l~rlI~dyLlR~G~~~tA~~l~~e~-~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~---------- 214 (321)
.-..++.-+.+.|.++.|....+.. .+. .-+...+..+..+ .+..|+.+.|++++..--.......
T Consensus 39 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~--~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 115 (213)
T 1hh8_A 39 ICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML--YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 115 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH--HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence 4445677777888888777755542 332 2223444444433 3468999999999876543221111
Q ss_pred -ChhhHHhhHHHHHHHHhcCChHHHHHHHHHhccchhhhcHHHHHHHHhHh
Q 020769 215 -SKFEFQLRLQEFIELVRGENNLRAITYARKYLAPWGATHMKELQRVMATL 264 (321)
Q Consensus 215 -s~LeF~Lr~q~fIELir~~~~~eAi~yark~l~~~~~~~~~ei~~~m~lL 264 (321)
..-....+...-.-+.+.|+..+|+.+.++-+.-........+..++..+
T Consensus 116 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~ 166 (213)
T 1hh8_A 116 FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECV 166 (213)
T ss_dssp CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHHHHHH
Confidence 01122334444445667899999999999766544333334555555544
No 98
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.64 E-value=89 Score=22.17 Aligned_cols=25 Identities=12% Similarity=0.255 Sum_probs=18.6
Q ss_pred HHHHHHHH--c-CChHHHHHHHHhhhhH
Q 020769 185 KKVIDALQ--N-KEVAPALAWCSDNKSR 209 (321)
Q Consensus 185 ~~I~~~L~--~-gdi~~AL~W~~~n~~~ 209 (321)
.+.+.+|+ . .|++.|++|+-+|...
T Consensus 24 ~~a~~AL~~t~n~~ve~A~ewL~~~~~d 51 (74)
T 2dag_A 24 DACRKAVYYTGNSGAEAAMNWVMSHMDD 51 (74)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHhCCCC
Confidence 35677774 2 3799999999988654
No 99
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=20.50 E-value=4.5e+02 Score=23.27 Aligned_cols=103 Identities=8% Similarity=-0.093 Sum_probs=62.6
Q ss_pred hhhhhcHHHHHHHHHHHHHHhChHHHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHcCChHHHHHHHHhhhhHhhhcCCh
Q 020769 137 NLAEWNNTRVKRILVDYMLRMSYYETAEKLAESSNIQDLVDIEVFQEAKKVIDALQNKEVAPALAWCSDNKSRLKKSKSK 216 (321)
Q Consensus 137 ~~~~w~~~~l~rlI~dyLlR~G~~~tA~~l~~e~~i~~~~d~e~f~~~~~I~~~L~~gdi~~AL~W~~~n~~~L~k~~s~ 216 (321)
.+..+++..+.-..+-.|...|-++-|..+....-....-+. .....-.-.++.++++.|++.+.... +...+
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~---~~~~~a~l~~~~~r~~dA~~~l~~a~----~~~d~ 167 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL---VAWMKAVVYGAAERWTDVIDQVKSAG----KWPDK 167 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH---HHHHHHHHHHHTTCHHHHHHHHTTGG----GCSCH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH---HHHHHHHHHHHcCCHHHHHHHHHHhh----ccCCc
Confidence 345677889998899999999988888877655433222111 22333335557788888888775321 11111
Q ss_pred h-hHHhhHHHHHHHHhcCChHHHHHHHHHhc
Q 020769 217 F-EFQLRLQEFIELVRGENNLRAITYARKYL 246 (321)
Q Consensus 217 L-eF~Lr~q~fIELir~~~~~eAi~yark~l 246 (321)
+ .=..+..--.-+.+.|+..+|+.|.++-.
T Consensus 168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~ 198 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAANLALFTEAERRLTEAN 198 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 1 12244444555666777778877777654
No 100
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.46 E-value=71 Score=23.42 Aligned_cols=26 Identities=23% Similarity=0.291 Sum_probs=19.4
Q ss_pred HHHHHH--cCChHHHHHHHHhhhhHhhh
Q 020769 187 VIDALQ--NKEVAPALAWCSDNKSRLKK 212 (321)
Q Consensus 187 I~~~L~--~gdi~~AL~W~~~n~~~L~k 212 (321)
.+.+|+ ++|++.|++|+-+|...+.+
T Consensus 38 a~~AL~~~n~n~e~A~ewL~~h~~D~D~ 65 (85)
T 2dkl_A 38 AEEALKSNNMNLDQAMSALLEKKVDVDK 65 (85)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTSCCSSC
T ss_pred HHHHHHHcCCCHHHHHHHHHHCcCCccc
Confidence 455553 68899999999998765543
No 101
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=20.44 E-value=2.3e+02 Score=19.84 Aligned_cols=36 Identities=6% Similarity=0.237 Sum_probs=28.9
Q ss_pred cccccHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhc
Q 020769 47 FLRVPFEHYKKT---IRTNHRAVEKEITSVISNVADVSD 82 (321)
Q Consensus 47 ~~~vP~E~l~k~---fr~~qk~ieke~~~v~~~~~~l~~ 82 (321)
.++|.+|.|+.. |+.....|+..+..+...+..+..
T Consensus 6 ~i~v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L~~ 44 (93)
T 4ioe_A 6 EIKITPEELERIAGNFKNAAGEAQSQINRLEGDINSLEG 44 (93)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999998864 777778888888888888888754
No 102
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=20.10 E-value=3.6e+02 Score=22.34 Aligned_cols=91 Identities=8% Similarity=-0.060 Sum_probs=47.6
Q ss_pred HHHHHHHhChHHHHHHHHHHh-CCCCcccHHHHHHHHHHHHHHHcC-ChHHHHHHHHhhhhHhhhcCChhhHHhhHHHHH
Q 020769 150 LVDYMLRMSYYETAEKLAESS-NIQDLVDIEVFQEAKKVIDALQNK-EVAPALAWCSDNKSRLKKSKSKFEFQLRLQEFI 227 (321)
Q Consensus 150 I~dyLlR~G~~~tA~~l~~e~-~i~~~~d~e~f~~~~~I~~~L~~g-di~~AL~W~~~n~~~L~k~~s~LeF~Lr~q~fI 227 (321)
.+.-+.+.|.++.|..+.+.. ... ..+.+.+..+. .-....| +.+.|+.++..--. +....... +...-.
T Consensus 62 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~--~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~----~~~l~~ 133 (330)
T 3hym_B 62 HIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG--CYYLMVGHKNEHARRYLSKATT-LEKTYGPA----WIAYGH 133 (330)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH--HHHHHSCSCHHHHHHHHHHHHT-TCTTCTHH----HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH--HHHHHhhhhHHHHHHHHHHHHH-hCCccHHH----HHHHHH
Confidence 445556777777776655543 211 12223332222 2234567 88888888765421 11111222 222333
Q ss_pred HHHhcCChHHHHHHHHHhccc
Q 020769 228 ELVRGENNLRAITYARKYLAP 248 (321)
Q Consensus 228 ELir~~~~~eAi~yark~l~~ 248 (321)
-+...|+..+|+.+.++-+.-
T Consensus 134 ~~~~~~~~~~A~~~~~~a~~~ 154 (330)
T 3hym_B 134 SFAVESEHDQAMAAYFTAAQL 154 (330)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 345668899999888876543
Done!