BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020771
(321 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P36163|OMA1_YEAST Mitochondrial metalloendopeptidase OMA1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=OMA1 PE=1 SV=2
Length = 345
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 257 SHLDGLNWEVLVVNEPVI--NAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
S LDG+ WE+ VVN+P NAF LPGGK+ +F+ +L D IAT++ HE
Sbjct: 152 SLLDGIKWEIHVVNDPTASPNAFVLPGGKVFIFSSILPICANDDGIATVLAHE 204
Score = 40.4 bits (93), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%)
Query: 109 GAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRV 168
G Y +L+ P + R+ F+ +S+ +E +G ++ + + +ILP HP S+++
Sbjct: 73 GGCSLFYYTHLDKAPVSDRSRFIWVSRPLELTIGNYTYKSIWRQTQQEILPPQHPLSIKI 132
Query: 169 RLIAKDIIEA 178
I I+EA
Sbjct: 133 ENIFMKIVEA 142
>sp|Q9P7G4|OMA1_SCHPO Mitochondrial metalloendopeptidase OMA1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=oma1 PE=3 SV=1
Length = 337
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 255 ATSHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
A S + L WE+ V+ +P NAF LPGGK+ VF G+L + + +A ++ HE
Sbjct: 144 AVSGMSDLKWELHVIRDPTPNAFVLPGGKVFVFEGILPMCKGEDGLAAVLAHE 196
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 96 NPRT-----VFIVVVIGSGAFITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMK 150
NPR +F ++ G G + Y +LE VP + R F +S E+++ + ++++
Sbjct: 61 NPRDKRFQWIFGALIAGGGVY---YFTHLEYVPISNRRRFNDVSLDFEKRMAQDAYKEVM 117
Query: 151 AAFKGKILPAIHPDSVRVRLIAKDII 176
+ + ++LP+ HP ++ V + K II
Sbjct: 118 SEYGDRMLPSYHPTTLYVSRVLKRII 143
>sp|Q96E52|OMA1_HUMAN Metalloendopeptidase OMA1, mitochondrial OS=Homo sapiens GN=OMA1
PE=1 SV=1
Length = 524
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 259 LDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
+ +NW + VV+ P+INAF LP G++ VFTG L +++ ++GHE
Sbjct: 280 ISQINWVIHVVDSPIINAFVLPNGQMFVFTGFLNSVTDIHQLSFLLGHE 328
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 16/107 (14%)
Query: 88 RGPRKWLQ----------------NPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFV 131
RG RKW Q N +F+ + F+ Y +LE P T R+ +
Sbjct: 167 RGIRKWWQALPPNKKEVVKENIRKNKWKLFLGLSSFGLLFVVFYFTHLEVSPITGRSKLL 226
Query: 132 LLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEA 178
LL K R L E +++ FK +L + V+ + +IE
Sbjct: 227 LLGKEQFRLLSELEYEAWMEEFKNDMLTEKDARYLAVKEVLCHLIEC 273
>sp|Q9D8H7|OMA1_MOUSE Metalloendopeptidase OMA1, mitochondrial OS=Mus musculus GN=Oma1
PE=2 SV=1
Length = 521
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 263 NWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
NW V VV+ P +NAF LP G++ +FTGLL +++ ++GHE
Sbjct: 280 NWVVHVVDSPAVNAFVLPNGQVFIFTGLLNSVTDVHQLSFLLGHE 324
Score = 35.4 bits (80), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 16/98 (16%)
Query: 88 RGPRKWLQ----NPRTVF--------IVVVIGSGAF----ITLYLGNLETVPYTKRTHFV 131
RG RKW Q N + +F +++G AF + Y +LE P T R+ +
Sbjct: 163 RGIRKWWQALPPNKKELFKDSVRKNKWRLLLGLSAFGLLFVVFYFTHLEVSPVTGRSKLL 222
Query: 132 LLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVR 169
L+ K R L + +++ FK +LP P + V+
Sbjct: 223 LVGKEHFRLLSDLEYEVWMEEFKNDLLPERDPRYLTVK 260
>sp|D3ZS74|OMA1_RAT Metalloendopeptidase OMA1, mitochondrial OS=Rattus norvegicus
GN=Oma1 PE=3 SV=1
Length = 504
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
+NW V VV+ P +NAF LP G++ VFTGLL +++ ++GHE
Sbjct: 262 INWVVHVVHSPKVNAFVLPNGQVFVFTGLLNSVTDMHQLSFLLGHE 307
Score = 35.0 bits (79), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 33/70 (47%)
Query: 111 FITLYLGNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRL 170
F+ Y +LE P T R+ +L+ K R L + +++ FK +LP P + V+
Sbjct: 185 FVVFYFTHLEVSPVTGRSKLLLVGKEHFRLLSDLEYEVWMEEFKNDLLPEEDPRYLTVKK 244
Query: 171 IAKDIIEALQ 180
+ + + Q
Sbjct: 245 VVYHLTQCNQ 254
>sp|Q3SZN3|OMA1_BOVIN Metalloendopeptidase OMA1, mitochondrial OS=Bos taurus GN=OMA1 PE=2
SV=2
Length = 523
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
+NW + VV+ P INAF LP G++ VFTGLL +++ ++GHE
Sbjct: 283 INWIIHVVDSPDINAFVLPNGQVFVFTGLLNSVTDIHQLSFLLGHE 328
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 16/109 (14%)
Query: 88 RGPRKWLQ----------------NPRTVFIVVVIGSGAFITLYLGNLETVPYTKRTHFV 131
RG RKW Q N +F+ + F+ Y +LE P T R+ +
Sbjct: 167 RGIRKWWQALPPNKKELFKESLRKNKWKLFLGLSSFGLLFVVFYFTHLEVSPVTGRSKLL 226
Query: 132 LLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDIIEALQ 180
+L K R L E +++ FK +L V V+ + +IE Q
Sbjct: 227 ILGKEHFRLLSELEYEAWMEEFKNDMLTEKDARYVAVKAVVHHLIECNQ 275
>sp|E9QBI7|OMA1_DANRE Metalloendopeptidase OMA1, mitochondrial OS=Danio rerio GN=oma1
PE=3 SV=1
Length = 478
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 257 SHLDGLNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
+ + + W V VV+ P +NAF LP G+I VFTG+L ++ I+GHE
Sbjct: 247 AEISAVPWTVHVVDSPTMNAFVLPNGEIFVFTGMLNAVTDIHQLTFILGHE 297
>sp|P25894|YGGG_ECOLI Uncharacterized metalloprotease YggG OS=Escherichia coli (strain
K12) GN=yggG PE=1 SV=2
Length = 252
Score = 37.7 bits (86), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 262 LNWEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
+N++V + + +NAF + G I V++GL++ TD E+ +IGHE
Sbjct: 89 VNYKVYMAKD--VNAFAMANGCIRVYSGLMD-MMTDNEVEAVIGHE 131
>sp|P66950|YFGC_SALTY TPR repeat-containing protein YfgC OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=yfgC PE=4 SV=1
Length = 487
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 256 TSHLDGLN--WEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
SH D + + ++N INAF GG +V+ + L + ++++A+++ HE
Sbjct: 84 VSHADSVKTPFHFFLINNDEINAFAFFGGNVVLHSALFRYADNESQLASVMAHE 137
>sp|P66951|YFGC_SALTI TPR repeat-containing protein YfgC OS=Salmonella typhi GN=yfgC PE=4
SV=1
Length = 487
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 256 TSHLDGLN--WEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
SH D + + ++N INAF GG +V+ + L + ++++A+++ HE
Sbjct: 84 VSHADSVKTPFHFFLINNDEINAFAFFGGNVVLHSALFRYADNESQLASVMAHE 137
>sp|Q8ZCC3|Y3069_YERPE TPR repeat-containing protein YPO3069/y1412/YP_2691 OS=Yersinia
pestis GN=YPO3069 PE=4 SV=1
Length = 486
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 268 VVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
+VN INAF GG +V+ + L + ++E+A+++ HE
Sbjct: 96 LVNNDQINAFAFFGGNVVLHSALFRYTDNESELASVLAHE 135
>sp|B8HNM1|Y1379_CYAP4 UPF0234 protein Cyan7425_1379 OS=Cyanothece sp. (strain PCC 7425 /
ATCC 29141) GN=Cyan7425_1379 PE=3 SV=1
Length = 163
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 117 GNLETVPYTKRTHFVLLSKAVERQLGESQFQQMKAAFKGKILPAIHPDSVRVRLIAKDII 176
G +E+V + + L K ++ ++G+ + ++ FK K+ P+I D+VRV +KD +
Sbjct: 83 GKVESVSGNRVQQVIKLRKGIDSEIGKEISKLIRTDFK-KVQPSIQGDAVRVSAKSKDDL 141
Query: 177 EALQRGLKHE 186
+ + + LK E
Sbjct: 142 QEVIQRLKQE 151
>sp|Q9KQ40|Y2164_VIBCH TPR repeat-containing protein VC_2164 OS=Vibrio cholerae serotype
O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=VC_2164
PE=4 SV=1
Length = 484
Score = 36.2 bits (82), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 274 INAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
INAF GG + + +GL H ++++E+A+++ HE
Sbjct: 101 INAFAFFGGYVALHSGLFLHAQSESELASVMAHE 134
>sp|P66949|YFGC_SHIFL TPR repeat-containing protein YfgC OS=Shigella flexneri GN=yfgC
PE=4 SV=1
Length = 487
Score = 35.4 bits (80), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 264 WEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
+ ++N INAF GG +V+ + L + ++++A+++ HE
Sbjct: 94 FHFFLINNDEINAFAFFGGNVVLHSALFRYSDNESQLASVMAHE 137
>sp|P66948|YFGC_ECOLI TPR repeat-containing protein YfgC OS=Escherichia coli (strain K12)
GN=yfgC PE=4 SV=1
Length = 487
Score = 35.4 bits (80), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 264 WEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
+ ++N INAF GG +V+ + L + ++++A+++ HE
Sbjct: 94 FHFFLINNDEINAFAFFGGNVVLHSALFRYSDNESQLASVMAHE 137
>sp|Q8XAD2|YFGC_ECO57 TPR repeat-containing protein YfgC OS=Escherichia coli O157:H7
GN=yfgC PE=4 SV=1
Length = 487
Score = 35.4 bits (80), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 26/44 (59%)
Query: 264 WEVLVVNEPVINAFCLPGGKIVVFTGLLEHFRTDAEIATIIGHE 307
+ ++N INAF GG +V+ + L + ++++A+++ HE
Sbjct: 94 FHFFLINNDEINAFAFFGGNVVLHSALFRYSDNESQLASVMAHE 137
>sp|B0RS04|HTPX_XANCB Protease HtpX OS=Xanthomonas campestris pv. campestris (strain
B100) GN=htpX PE=3 SV=1
Length = 292
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 15/98 (15%)
Query: 215 LSENSERGKTEGKWHQEDEILDDKW-VQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPV 273
LS+ + T + E ++W V R++ Q G+ EV + + P
Sbjct: 54 LSKFMAKRSTGAQVITEPRTQTERWLVDTVRRQAQAAGIGMP---------EVAIYDGPE 104
Query: 274 INAFCLPGGK----IVVFTGLLEHFRTDAEIATIIGHE 307
INAF + + V TGLL+H R D E ++GHE
Sbjct: 105 INAFATGANRNNALVAVSTGLLQHMRED-EAEAVLGHE 141
>sp|Q8P8F0|HTPX_XANCP Protease HtpX OS=Xanthomonas campestris pv. campestris (strain ATCC
33913 / NCPPB 528 / LMG 568) GN=htpX PE=3 SV=1
Length = 292
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 15/98 (15%)
Query: 215 LSENSERGKTEGKWHQEDEILDDKW-VQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPV 273
LS+ + T + E ++W V R++ Q G+ EV + + P
Sbjct: 54 LSKFMAKRSTGAQVITEPRTQTERWLVDTVRRQAQAAGIGMP---------EVAIYDGPE 104
Query: 274 INAFCLPGGK----IVVFTGLLEHFRTDAEIATIIGHE 307
INAF + + V TGLL+H R D E ++GHE
Sbjct: 105 INAFATGANRNNALVAVSTGLLQHMRED-EAEAVLGHE 141
>sp|Q4UVN7|HTPX_XANC8 Protease HtpX OS=Xanthomonas campestris pv. campestris (strain
8004) GN=htpX PE=3 SV=1
Length = 292
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 15/98 (15%)
Query: 215 LSENSERGKTEGKWHQEDEILDDKW-VQQSRKKGQEKGLQSATSHLDGLNWEVLVVNEPV 273
LS+ + T + E ++W V R++ Q G+ EV + + P
Sbjct: 54 LSKFMAKRSTGAQVITEPRTQTERWLVDTVRRQAQAAGIGMP---------EVAIYDGPE 104
Query: 274 INAFCLPGGK----IVVFTGLLEHFRTDAEIATIIGHE 307
INAF + + V TGLL+H R D E ++GHE
Sbjct: 105 INAFATGANRNNALVAVSTGLLQHMRED-EAEAVLGHE 141
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,278,282
Number of Sequences: 539616
Number of extensions: 4900260
Number of successful extensions: 12627
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 12604
Number of HSP's gapped (non-prelim): 29
length of query: 321
length of database: 191,569,459
effective HSP length: 117
effective length of query: 204
effective length of database: 128,434,387
effective search space: 26200614948
effective search space used: 26200614948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)