Query 020772
Match_columns 321
No_of_seqs 147 out of 1367
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 05:02:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020772.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020772hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00817 tpt Tpt phosphate/ph 100.0 1E-38 2.2E-43 284.8 31.7 290 15-305 4-297 (302)
2 PTZ00343 triose or hexose phos 100.0 6.1E-36 1.3E-40 270.8 33.0 291 11-302 47-349 (350)
3 KOG1444 Nucleotide-sugar trans 100.0 2E-35 4.3E-40 251.9 26.9 295 14-310 13-309 (314)
4 KOG1441 Glucose-6-phosphate/ph 100.0 6.5E-35 1.4E-39 254.5 17.5 300 6-309 9-315 (316)
5 PLN00411 nodulin MtN21 family 100.0 2.9E-30 6.2E-35 233.0 31.0 289 15-310 15-337 (358)
6 PF08449 UAA: UAA transporter 100.0 3.1E-28 6.6E-33 217.0 30.8 270 31-306 18-302 (303)
7 PRK11689 aromatic amino acid e 100.0 6.1E-28 1.3E-32 214.4 31.6 271 9-303 4-289 (295)
8 PRK11272 putative DMT superfam 100.0 2.3E-27 5E-32 210.4 33.0 271 15-304 14-288 (292)
9 PRK15430 putative chlorampheni 100.0 1.5E-27 3.3E-32 212.0 31.3 284 6-308 5-292 (296)
10 PRK11453 O-acetylserine/cystei 100.0 8.1E-27 1.8E-31 207.7 31.7 277 11-303 6-289 (299)
11 PRK10532 threonine and homoser 100.0 2E-26 4.4E-31 204.4 31.8 263 14-303 17-283 (293)
12 TIGR00950 2A78 Carboxylate/Ami 100.0 7.8E-27 1.7E-31 203.9 27.9 252 29-296 5-259 (260)
13 COG5070 VRG4 Nucleotide-sugar 100.0 1.4E-26 3E-31 186.5 18.3 288 15-310 8-305 (309)
14 PF06027 DUF914: Eukaryotic pr 99.9 2.3E-25 5.1E-30 197.1 25.0 269 29-305 29-309 (334)
15 KOG1442 GDP-fucose transporter 99.9 6.5E-28 1.4E-32 199.8 4.9 295 15-312 30-338 (347)
16 KOG1443 Predicted integral mem 99.9 1.4E-24 3E-29 183.1 18.4 287 14-301 17-315 (349)
17 TIGR03340 phn_DUF6 phosphonate 99.9 2.3E-22 5E-27 177.5 25.8 259 27-298 15-280 (281)
18 TIGR00688 rarD rarD protein. T 99.9 1.3E-21 2.7E-26 170.6 27.5 246 10-275 3-255 (256)
19 COG0697 RhaT Permeases of the 99.9 3.9E-20 8.4E-25 163.8 31.8 268 21-302 15-288 (292)
20 KOG1580 UDP-galactose transpor 99.9 1.6E-22 3.5E-27 164.4 12.6 256 40-301 51-313 (337)
21 KOG1581 UDP-galactose transpor 99.9 2.1E-20 4.5E-25 158.1 25.4 262 38-305 47-317 (327)
22 COG5006 rhtA Threonine/homoser 99.9 1.8E-19 4E-24 148.4 24.2 250 31-302 30-283 (292)
23 COG2962 RarD Predicted permeas 99.8 2.9E-17 6.2E-22 139.1 30.5 285 5-309 3-291 (293)
24 TIGR00776 RhaT RhaT L-rhamnose 99.8 8.6E-18 1.9E-22 148.6 24.3 262 12-300 4-287 (290)
25 KOG4510 Permease of the drug/m 99.8 1.1E-20 2.5E-25 156.5 1.4 274 15-304 41-328 (346)
26 PF04142 Nuc_sug_transp: Nucle 99.8 1E-17 2.2E-22 143.6 19.2 213 73-291 14-243 (244)
27 KOG2765 Predicted membrane pro 99.8 1E-18 2.2E-23 151.7 13.0 229 75-308 158-397 (416)
28 KOG2234 Predicted UDP-galactos 99.8 2.2E-16 4.8E-21 137.4 27.2 277 24-306 26-327 (345)
29 KOG3912 Predicted integral mem 99.8 3.3E-17 7.1E-22 136.9 20.9 224 77-301 87-334 (372)
30 KOG1583 UDP-N-acetylglucosamin 99.8 1.7E-18 3.7E-23 144.3 11.3 256 45-307 36-320 (330)
31 KOG1582 UDP-galactose transpor 99.8 4.1E-17 8.9E-22 135.7 17.7 257 41-303 74-334 (367)
32 PF03151 TPT: Triose-phosphate 99.7 1E-16 2.2E-21 128.6 14.5 143 157-301 1-153 (153)
33 KOG2766 Predicted membrane pro 99.5 2.3E-15 5E-20 124.4 -0.0 280 8-303 13-301 (336)
34 TIGR00803 nst UDP-galactose tr 99.4 7.9E-12 1.7E-16 106.5 12.0 194 100-299 2-222 (222)
35 COG2510 Predicted membrane pro 99.3 2.9E-11 6.4E-16 89.8 9.9 131 12-147 6-138 (140)
36 PF00892 EamA: EamA-like trans 99.3 2.7E-11 5.8E-16 93.3 10.1 118 28-147 6-125 (126)
37 COG2510 Predicted membrane pro 99.3 1.7E-11 3.7E-16 91.0 8.2 134 158-300 5-138 (140)
38 PF13536 EmrE: Multidrug resis 99.2 4.8E-11 1E-15 90.4 9.1 105 47-152 2-110 (113)
39 KOG4314 Predicted carbohydrate 99.2 1.5E-11 3.3E-16 98.1 5.5 216 75-301 52-276 (290)
40 PF00892 EamA: EamA-like trans 99.2 2.2E-10 4.7E-15 88.2 9.5 124 166-300 1-125 (126)
41 PF06800 Sugar_transport: Suga 99.1 2.7E-08 5.9E-13 85.4 21.4 209 74-298 43-268 (269)
42 PRK15430 putative chlorampheni 99.0 2.5E-08 5.3E-13 88.8 16.9 141 152-300 4-144 (296)
43 TIGR00688 rarD rarD protein. T 99.0 4.4E-08 9.4E-13 85.3 16.4 139 156-299 2-140 (256)
44 TIGR00950 2A78 Carboxylate/Ami 98.9 7.1E-08 1.5E-12 84.1 16.7 130 14-144 129-260 (260)
45 TIGR03340 phn_DUF6 phosphonate 98.9 6.3E-08 1.4E-12 85.5 14.8 132 158-300 3-134 (281)
46 PLN00411 nodulin MtN21 family 98.7 5.8E-07 1.3E-11 81.7 14.5 138 156-301 13-156 (358)
47 PF05653 Mg_trans_NIPA: Magnes 98.6 1.5E-07 3.4E-12 83.3 8.7 219 79-304 52-295 (300)
48 PRK10532 threonine and homoser 98.6 3.6E-06 7.8E-11 74.8 16.8 125 21-148 156-281 (293)
49 PRK15051 4-amino-4-deoxy-L-ara 98.5 2.5E-06 5.3E-11 64.1 12.1 65 84-148 45-109 (111)
50 PRK13499 rhamnose-proton sympo 98.5 0.00017 3.7E-09 64.7 25.7 228 71-302 68-342 (345)
51 PRK11272 putative DMT superfam 98.5 3.7E-06 8.1E-11 74.7 15.2 120 29-150 166-287 (292)
52 PRK11689 aromatic amino acid e 98.5 5.3E-06 1.1E-10 73.8 14.6 79 70-148 209-287 (295)
53 PRK11453 O-acetylserine/cystei 98.4 1.3E-05 2.9E-10 71.4 16.4 138 13-150 143-289 (299)
54 PTZ00343 triose or hexose phos 98.3 2.4E-05 5.2E-10 71.3 15.8 136 155-300 48-185 (350)
55 PF13536 EmrE: Multidrug resis 98.3 1.7E-05 3.7E-10 59.9 12.2 105 193-304 4-109 (113)
56 PRK02971 4-amino-4-deoxy-L-ara 98.3 8E-06 1.7E-10 62.9 10.3 119 156-302 2-123 (129)
57 COG2962 RarD Predicted permeas 98.2 4.6E-05 9.9E-10 65.5 14.2 139 154-301 5-144 (293)
58 TIGR00817 tpt Tpt phosphate/ph 98.2 4.3E-05 9.4E-10 68.2 15.1 127 163-299 9-135 (302)
59 TIGR00776 RhaT RhaT L-rhamnose 98.1 9.8E-05 2.1E-09 65.5 13.9 126 14-147 153-287 (290)
60 PF03151 TPT: Triose-phosphate 98.1 0.00019 4E-09 57.2 14.1 123 25-147 12-152 (153)
61 COG4975 GlcU Putative glucose 98.0 1.6E-06 3.5E-11 72.2 0.3 262 12-300 5-284 (288)
62 PF08449 UAA: UAA transporter 97.9 0.00017 3.6E-09 64.5 12.3 130 167-307 11-142 (303)
63 PRK02971 4-amino-4-deoxy-L-ara 97.9 7.9E-05 1.7E-09 57.4 8.4 72 79-150 50-124 (129)
64 COG0697 RhaT Permeases of the 97.9 0.0008 1.7E-08 59.2 16.1 80 70-149 208-288 (292)
65 PRK15051 4-amino-4-deoxy-L-ara 97.8 0.00017 3.7E-09 54.1 8.9 63 237-300 45-108 (111)
66 KOG2922 Uncharacterized conser 97.8 3.5E-05 7.6E-10 67.0 5.2 222 79-306 66-311 (335)
67 PF06027 DUF914: Eukaryotic pr 97.8 0.00053 1.2E-08 61.5 12.4 140 155-302 12-152 (334)
68 PRK10452 multidrug efflux syst 97.7 0.00026 5.6E-09 53.6 8.0 72 78-149 32-104 (120)
69 PF04657 DUF606: Protein of un 97.7 0.0019 4.1E-08 50.5 12.9 130 158-297 3-137 (138)
70 PRK13499 rhamnose-proton sympo 97.6 0.0018 3.9E-08 58.2 13.6 137 155-303 6-155 (345)
71 PRK09541 emrE multidrug efflux 97.6 0.0013 2.8E-08 49.1 10.3 70 80-149 34-104 (110)
72 COG5006 rhtA Threonine/homoser 97.5 0.003 6.5E-08 53.4 12.8 131 13-145 148-279 (292)
73 COG2076 EmrE Membrane transpor 97.5 0.0014 3E-08 48.1 9.4 72 77-148 31-103 (106)
74 PRK11431 multidrug efflux syst 97.5 0.0019 4.2E-08 47.7 10.1 72 77-148 30-102 (105)
75 PRK10650 multidrug efflux syst 97.4 0.0025 5.4E-08 47.4 10.1 69 78-146 37-106 (109)
76 PF04657 DUF606: Protein of un 97.3 0.016 3.4E-07 45.3 13.3 126 19-145 7-138 (138)
77 PRK10452 multidrug efflux syst 97.2 0.0015 3.3E-08 49.4 7.1 58 245-303 47-105 (120)
78 PF00893 Multi_Drug_Res: Small 97.1 0.0018 3.8E-08 47.0 6.3 58 81-138 34-92 (93)
79 PF04142 Nuc_sug_transp: Nucle 97.1 0.0012 2.5E-08 57.0 6.2 79 226-305 15-93 (244)
80 PF06800 Sugar_transport: Suga 97.0 0.027 5.8E-07 48.9 13.0 67 77-143 196-266 (269)
81 PF05653 Mg_trans_NIPA: Magnes 96.9 0.0021 4.5E-08 57.2 6.3 118 154-301 5-122 (300)
82 PRK09541 emrE multidrug efflux 96.9 0.0049 1.1E-07 46.0 7.1 56 246-302 48-104 (110)
83 PRK10650 multidrug efflux syst 96.9 0.032 7E-07 41.5 11.3 54 246-300 53-107 (109)
84 COG2076 EmrE Membrane transpor 96.9 0.0076 1.7E-07 44.2 7.6 55 247-302 49-104 (106)
85 PRK11431 multidrug efflux syst 96.5 0.02 4.4E-07 42.3 8.0 55 246-301 47-102 (105)
86 COG3238 Uncharacterized protei 96.2 0.18 4E-06 39.5 11.9 139 155-301 4-146 (150)
87 TIGR00803 nst UDP-galactose tr 96.0 0.078 1.7E-06 45.0 10.3 66 80-145 156-221 (222)
88 COG3238 Uncharacterized protei 95.8 0.5 1.1E-05 37.1 13.0 135 13-147 5-145 (150)
89 KOG2234 Predicted UDP-galactos 95.7 0.53 1.1E-05 42.1 14.0 141 159-300 18-163 (345)
90 PF10639 UPF0546: Uncharacteri 95.6 0.039 8.5E-07 41.2 5.8 69 76-145 42-111 (113)
91 PF00893 Multi_Drug_Res: Small 95.5 0.046 1E-06 39.5 5.7 54 238-292 38-93 (93)
92 PF07857 DUF1632: CEO family ( 94.9 0.04 8.6E-07 47.5 4.6 133 157-306 1-139 (254)
93 KOG1441 Glucose-6-phosphate/ph 94.8 0.11 2.3E-06 46.4 7.1 137 11-148 161-307 (316)
94 KOG1581 UDP-galactose transpor 94.7 0.84 1.8E-05 40.0 11.9 136 10-145 169-310 (327)
95 PF06379 RhaT: L-rhamnose-prot 94.7 1.9 4.1E-05 38.6 14.4 147 155-307 6-159 (344)
96 KOG4510 Permease of the drug/m 94.6 0.059 1.3E-06 46.1 4.7 76 71-146 248-323 (346)
97 COG4975 GlcU Putative glucose 93.3 0.1 2.2E-06 44.2 3.7 129 157-301 3-136 (288)
98 COG5070 VRG4 Nucleotide-sugar 92.3 2.8 6E-05 35.2 10.6 125 22-146 164-294 (309)
99 PF10639 UPF0546: Uncharacteri 91.9 1.3 2.9E-05 33.0 7.7 50 248-298 61-111 (113)
100 KOG2765 Predicted membrane pro 91.1 2.8 6.1E-05 37.9 10.2 133 12-150 250-392 (416)
101 KOG1444 Nucleotide-sugar trans 88.4 11 0.00023 33.6 11.5 135 156-300 12-148 (314)
102 KOG1580 UDP-galactose transpor 86.9 0.75 1.6E-05 38.8 3.4 72 76-147 241-312 (337)
103 KOG1582 UDP-galactose transpor 85.8 8.5 0.00018 33.5 9.2 108 45-152 223-336 (367)
104 KOG4314 Predicted carbohydrate 85.6 0.39 8.4E-06 39.3 1.1 62 240-302 65-126 (290)
105 KOG2922 Uncharacterized conser 85.3 0.14 3E-06 45.1 -1.7 119 153-302 18-137 (335)
106 KOG3912 Predicted integral mem 81.9 3.2 7E-05 36.1 5.1 61 239-300 97-157 (372)
107 PF05297 Herpes_LMP1: Herpesvi 71.6 1.3 2.8E-05 38.4 0.0 99 97-196 44-146 (381)
108 KOG2766 Predicted membrane pro 65.6 18 0.00038 31.3 5.5 133 9-148 166-299 (336)
109 PRK02237 hypothetical protein; 61.4 64 0.0014 23.8 7.3 38 111-148 68-105 (109)
110 PF04342 DUF486: Protein of un 58.1 73 0.0016 23.4 8.0 60 86-145 45-105 (108)
111 PF02694 UPF0060: Uncharacteri 56.9 17 0.00037 26.7 3.5 38 111-148 66-103 (107)
112 KOG1583 UDP-N-acetylglucosamin 56.9 46 0.001 29.2 6.6 44 104-147 270-313 (330)
113 COG1971 Predicted membrane pro 56.7 18 0.00039 29.7 4.0 37 254-291 40-76 (190)
114 KOG4831 Unnamed protein [Funct 55.6 23 0.00049 26.0 3.9 68 77-145 54-122 (125)
115 PF04342 DUF486: Protein of un 55.5 12 0.00026 27.4 2.5 28 269-297 77-104 (108)
116 PF11044 TMEMspv1-c74-12: Plec 55.2 21 0.00046 21.5 3.0 17 282-298 3-19 (49)
117 PF06379 RhaT: L-rhamnose-prot 52.7 1.8E+02 0.0039 26.4 23.2 284 12-300 6-339 (344)
118 TIGR02865 spore_II_E stage II 50.9 2.9E+02 0.0063 28.3 15.4 44 103-146 11-54 (764)
119 PRK02237 hypothetical protein; 50.1 24 0.00052 26.0 3.3 45 257-302 62-106 (109)
120 TIGR00905 2A0302 transporter, 49.1 2.4E+02 0.0052 26.7 16.2 23 284-306 417-439 (473)
121 KOG1442 GDP-fucose transporter 48.3 6.1 0.00013 34.4 0.1 110 185-297 60-170 (347)
122 COG3169 Uncharacterized protei 47.8 1.1E+02 0.0023 22.3 6.8 37 261-298 72-112 (116)
123 MTH00057 ND6 NADH dehydrogenas 47.7 1.6E+02 0.0034 24.2 10.9 48 157-208 28-75 (186)
124 PF07444 Ycf66_N: Ycf66 protei 47.6 27 0.00058 24.6 3.2 27 280-306 4-30 (84)
125 PRK06638 NADH:ubiquinone oxido 47.3 1.6E+02 0.0036 24.3 12.1 49 156-208 30-78 (198)
126 PF02694 UPF0060: Uncharacteri 47.0 25 0.00053 25.9 3.0 45 257-302 60-104 (107)
127 PRK12437 prolipoprotein diacyl 44.6 22 0.00047 31.1 3.0 23 281-303 235-257 (269)
128 PF06946 Phage_holin_5: Phage 44.5 1.2E+02 0.0025 21.8 7.1 59 246-304 22-83 (93)
129 COG3086 RseC Positive regulato 43.4 54 0.0012 25.6 4.5 27 250-276 70-96 (150)
130 PF05961 Chordopox_A13L: Chord 43.0 37 0.0008 22.6 3.0 24 284-307 5-28 (68)
131 COG1742 Uncharacterized conser 41.6 34 0.00073 25.1 2.9 37 113-149 69-105 (109)
132 PF07168 Ureide_permease: Urei 40.3 24 0.00052 31.3 2.5 132 162-299 2-144 (336)
133 COG3169 Uncharacterized protei 39.0 52 0.0011 23.8 3.5 30 117-146 84-113 (116)
134 TIGR03810 arg_ornith_anti argi 38.7 3.5E+02 0.0075 25.6 17.1 23 283-305 411-433 (468)
135 PF14880 COX14: Cytochrome oxi 36.0 29 0.00064 22.5 1.8 25 280-304 15-39 (59)
136 PRK07668 hypothetical protein; 35.7 3E+02 0.0064 23.9 8.6 9 77-85 177-185 (254)
137 TIGR01167 LPXTG_anchor LPXTG-m 34.8 31 0.00067 19.2 1.6 15 280-294 9-23 (34)
138 PRK11469 hypothetical protein; 34.5 68 0.0015 26.4 4.2 47 254-302 40-86 (188)
139 COG0004 AmtB Ammonia permease 34.5 3.9E+02 0.0085 25.0 15.3 133 70-205 191-332 (409)
140 PRK10666 ammonium transporter; 33.4 4.2E+02 0.0091 25.0 17.5 81 123-205 273-355 (428)
141 PF04246 RseC_MucC: Positive r 31.7 88 0.0019 24.0 4.3 25 252-276 65-89 (135)
142 TIGR02840 spore_YtaF putative 30.7 97 0.0021 25.9 4.6 47 252-299 31-79 (206)
143 PF15102 TMEM154: TMEM154 prot 26.9 21 0.00046 27.9 0.0 23 286-308 66-88 (146)
144 PRK01637 hypothetical protein; 26.6 2.2E+02 0.0047 25.1 6.4 22 281-302 246-267 (286)
145 PRK13108 prolipoprotein diacyl 26.6 4.3E+02 0.0094 25.2 8.5 23 281-303 254-276 (460)
146 COG5336 Uncharacterized protei 26.3 2.1E+02 0.0046 21.2 5.0 40 264-303 55-94 (116)
147 PHA03049 IMV membrane protein; 25.3 1E+02 0.0022 20.5 2.9 23 284-306 5-27 (68)
148 COG4147 DhlC Predicted symport 24.5 3.8E+02 0.0082 25.8 7.5 75 228-303 422-508 (529)
149 PF04971 Lysis_S: Lysis protei 24.4 64 0.0014 21.6 1.9 8 280-287 27-34 (68)
150 KOG1443 Predicted integral mem 24.3 2.9E+02 0.0063 24.8 6.4 51 96-146 263-313 (349)
151 PF02355 SecD_SecF: Protein ex 23.8 4.1E+02 0.0089 21.8 8.5 43 256-300 58-100 (189)
152 COG3965 Predicted Co/Zn/Cd cat 22.4 5.3E+02 0.012 22.6 9.6 83 43-127 128-212 (314)
153 PRK00052 prolipoprotein diacyl 22.1 1E+02 0.0023 26.9 3.4 22 281-302 237-258 (269)
154 cd08764 Cyt_b561_CG1275_like N 21.9 4.9E+02 0.011 22.0 13.6 32 283-314 175-206 (214)
155 PF00909 Ammonium_transp: Ammo 21.4 6.6E+02 0.014 23.3 18.6 85 117-204 239-325 (399)
156 PF13038 DUF3899: Domain of un 20.7 1.7E+02 0.0036 20.7 3.7 18 283-300 4-21 (92)
157 PRK10862 SoxR reducing system 20.2 1.8E+02 0.004 23.0 4.2 17 256-272 76-92 (154)
158 TIGR00836 amt ammonium transpo 20.1 7.2E+02 0.016 23.2 17.0 50 156-205 281-331 (403)
No 1
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=100.00 E-value=1e-38 Score=284.80 Aligned_cols=290 Identities=19% Similarity=0.162 Sum_probs=241.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHcCccccCcCChhhhHHHHHHHHHHHHHHHHhH
Q 020772 15 LFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFAL 94 (321)
Q Consensus 15 ~~~~~~~~~~~~~~~~~nK~~~~~~~~p~~i~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (321)
....+.|...|++.+++||+.++++++|..++++|+.++.+.+.+....+..+.++.++++++.+++.|++++.+..+.|
T Consensus 4 ~~~~~~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 83 (302)
T TIGR00817 4 GLLFGLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSN 83 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667899999999999999999889999999999999987776664434344456788899999999999999999999
Q ss_pred hhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHH
Q 020772 95 ASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFSFDLSGYSMALTSVFFQTMYLVL 174 (321)
Q Consensus 95 ~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~ 174 (321)
++++|++++++++++++.|+++++++++++|||++++++.+++++++|+.+...++.+.+..|++++++|+++|+.|.++
T Consensus 84 ~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~ 163 (302)
T TIGR00817 84 VSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNIF 163 (302)
T ss_pred HHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999877666677788999999999999999999
Q ss_pred HHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhc---cCchHHHHHHHHHHH-HHHHHHHHHHHHHh
Q 020772 175 VEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSK---SNSFSFLVILILSLV-MGIILNFTMFLCTI 250 (321)
Q Consensus 175 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~ 250 (321)
.||..++.+.|+.+.+.|+...+++.+.|.....++.+.......+. ......+...+..+. +....+...+.+++
T Consensus 164 ~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 243 (302)
T TIGR00817 164 SKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLG 243 (302)
T ss_pred HHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99988744579999999999999999999987765432211100010 111122332333443 33344556778999
Q ss_pred ccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHHHHh
Q 020772 251 VNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQ 305 (321)
Q Consensus 251 ~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~~~~ 305 (321)
+++|++.++.++++|++++++|++++|| ++|..+++|.++++.|+.+|++.|++
T Consensus 244 ~~sa~t~sv~~~l~pv~~~~~~~~~lge-~lt~~~~~G~~lil~Gv~l~~~~k~~ 297 (302)
T TIGR00817 244 RVSPLTHSVGNCMKRVVVIVVSILFFGT-KISPQQVFGTGIAIAGVFLYSRVKAQ 297 (302)
T ss_pred cCCchHHHHHhhhhhhheeeeehhhcCC-CCchhHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999998 99999999999999999999876543
No 2
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=100.00 E-value=6.1e-36 Score=270.81 Aligned_cols=291 Identities=16% Similarity=0.140 Sum_probs=245.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHcCccccCcCC--hhhhHHHHHHHHHHHH
Q 020772 11 PFLGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAID--LMTAKKLLPVSLFYNA 88 (321)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~nK~~~~~~~~p~~i~~~r~~~~~l~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 88 (321)
++.....++.|...|+..++.||++++++++|++++.+|++++.+++.++...+.++.++.+ +++++.+++.|+++..
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~ 126 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLF 126 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 56778888899999999999999999999999999999999998876665554443333343 4578899999999887
Q ss_pred HHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcccccccchhHHHHHHHHHHHH
Q 020772 89 NVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFSFDLSGYSMALTSVFFQ 168 (321)
Q Consensus 89 ~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~ 168 (321)
.....+.|+++++++++++++++.|+++++++++++|||++++++.+++++++|+.+.+.+|.+.++.|++++++|++++
T Consensus 127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~ 206 (350)
T PTZ00343 127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGS 206 (350)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHH
Confidence 77778899999999999999999999999999999999999999999999999999998888888889999999999999
Q ss_pred HHHHHHHHhhcCCC-----CCCHHHHHHHHhhhHHHHHHHHHHHhCCch-h-hhHh---hhhccCchHHHHHHHHHHHHH
Q 020772 169 TMYLVLVEKSGAED-----GLSSVEIMFYNSFLSLPFLVFLIIVTGEFP-G-SLSL---LFSKSNSFSFLVILILSLVMG 238 (321)
Q Consensus 169 a~~~v~~k~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~---~~~~~~~~~~~~~i~~~~~~~ 238 (321)
+.|+++.||..++. +.++.+...++.+.+.++++|..+..|... . .+.. ..+.+.....+..++.+++..
T Consensus 207 a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~i~~s~l~~ 286 (350)
T PTZ00343 207 SLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKGIIIFKIFFSGVWY 286 (350)
T ss_pred HHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchHHHHHHHHHHHHHH
Confidence 99999999988654 256777888889999999999887653321 1 1100 001111123344567778888
Q ss_pred HHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHH
Q 020772 239 IILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYA 302 (321)
Q Consensus 239 ~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~ 302 (321)
+..|.+.+.++++++|.+.++.+++||+++++.|++++|| ++|+.+++|.++++.|+.+|++.
T Consensus 287 ~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge-~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 287 YLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQT-QVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCC-CCchHhHHHHHHHHHHHHHHhhc
Confidence 8888888999999999999999999999999999999998 99999999999999999999875
No 3
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2e-35 Score=251.88 Aligned_cols=295 Identities=41% Similarity=0.592 Sum_probs=269.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHH--HHHHHHHHHHHHHHHcCccccCcCChhhhHHHHHHHHHHHHHHH
Q 020772 14 GLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLT--LQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVA 91 (321)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~nK~~~~~~~~p~~i~~--~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (321)
.+.+++.|+++|+.++++||++++++++|..+.. .|++.+.+.+....+.|..+.++++++..|.++|.++++.++.+
T Consensus 13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~ 92 (314)
T KOG1444|consen 13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLF 92 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHH
Confidence 3677889999999999999999999999988555 99999999999999999999999999999999999999999999
Q ss_pred HhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcccccccchhHHHHHHHHHHHHHHH
Q 020772 92 FALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFSFDLSGYSMALTSVFFQTMY 171 (321)
Q Consensus 92 ~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~ 171 (321)
.+..+++|+++++++++|+.+|+.+++.+.+++|.|+++..+.++....+|......+|.+++..|..|++...++.+.+
T Consensus 93 t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a~~ 172 (314)
T KOG1444|consen 93 TGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTAAF 172 (314)
T ss_pred HccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 020772 172 LVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIV 251 (321)
Q Consensus 172 ~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 251 (321)
.+..||..+..+.+.+.+++|+++.+.+.+....+.+||.. .....++.+.+...+..+.++|+++++.+++.++|.+.
T Consensus 173 ~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~-~l~~~~~~~~~~~~~~~~~lScv~gf~isy~s~~ct~~ 251 (314)
T KOG1444|consen 173 VVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELD-ALSLNFDNWSDSSVLVVMLLSCVMGFGISYTSFLCTRV 251 (314)
T ss_pred HHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchH-HHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999888889999999999999999999999999876 44444555667888999999999999999999999999
Q ss_pred cchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHHHHhhhhcC
Q 020772 252 NSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQQKKKK 310 (321)
Q Consensus 252 ~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~~~~~~~~~ 310 (321)
.||++.++++ .+......++.++++|+++++...+|..+.++|.++|++.+.++++.+
T Consensus 252 ~SAtT~tivG-~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k~~~ 309 (314)
T KOG1444|consen 252 NSATTTTIVG-AKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKKKQP 309 (314)
T ss_pred ccccceeehh-hhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhccCC
Confidence 9999999999 555555556665555569999999999999999999999886554443
No 4
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=100.00 E-value=6.5e-35 Score=254.46 Aligned_cols=300 Identities=24% Similarity=0.349 Sum_probs=259.0
Q ss_pred ccCCchhHH-HHHHHHHHHHHHHHHHHHHHHHh--ccCchHHHHHHHHHHHHHHHHHHHHcCccccCcC-ChhhhHHHHH
Q 020772 6 DAEISPFLG-LFAALSYGVSSMAMVFINKAVIM--QYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAI-DLMTAKKLLP 81 (321)
Q Consensus 6 ~~~~~~~~~-~~~~~~~~~~~~~~~~~nK~~~~--~~~~p~~i~~~r~~~~~l~l~~~~~~~~~~~~~~-~~~~~~~~~~ 81 (321)
+.+.++... ......|..++++....||+++. ++++|.+++..+..++.+........+..+.++. ++..++.+++
T Consensus 9 ~~~~~~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llp 88 (316)
T KOG1441|consen 9 SGQLKKILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLP 88 (316)
T ss_pred ccccchhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHH
Confidence 334444444 56677899999999999999999 8889999999999999999888888777665554 3457899999
Q ss_pred HHHHHHHHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcccccccchhHHHHH
Q 020772 82 VSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFSFDLSGYSMA 161 (321)
Q Consensus 82 ~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~~~~~~~G~~~~ 161 (321)
.|+++++...++|.+++++|+|+++++++++|+++.++++++.+|+.++..+++++....|+.+.+.+|.++|+.|.+.+
T Consensus 89 l~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a 168 (316)
T KOG1441|consen 89 LGLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISA 168 (316)
T ss_pred HHHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHhhhHHHHHH-HHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHHH
Q 020772 162 LTSVFFQTMYLVLVEKSG--AEDGLSSVEIMFYNSFLSLPFLV-FLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMG 238 (321)
Q Consensus 162 l~s~~~~a~~~v~~k~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 238 (321)
+++.+..+.++++.|+.+ ++++.|+.+.+.|+.+++...+. |.....+.... . ......++..++..+ +..+++
T Consensus 169 ~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~-~-~~~~~~~~~~~~~~~-~~sv~~ 245 (316)
T KOG1441|consen 169 MISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKF-V-GFLTAPWFVTFLILL-LNSVLA 245 (316)
T ss_pred HHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccce-e-eeeccccchhhHHHH-HHHHHH
Confidence 999999999999999998 46779999999999999999999 76655422211 0 001112233444444 444999
Q ss_pred HHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHHHHhhhhc
Q 020772 239 IILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQQKKK 309 (321)
Q Consensus 239 ~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~~~~~~~~ 309 (321)
...|...+.+++++||.+.++.+.+|.++.+..|+++|+| +.|+.+..|+++.+.|+.+|++.|.+++++
T Consensus 246 f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~-pvt~~n~~G~~iai~Gv~~Y~~~k~~~~~~ 315 (316)
T KOG1441|consen 246 FLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGN-PVTFLNALGYAIAILGVFLYSRAKLKEKKG 315 (316)
T ss_pred HHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecC-CCchhhHHHHHHHHHHHHHHHHHhhhhhcc
Confidence 9999999999999999999999999999999999999997 999999999999999999999998766543
No 5
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=2.9e-30 Score=232.98 Aligned_cols=289 Identities=13% Similarity=0.123 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHcCc--cccCcCChhhhHHHHHHHHHHHHHHHH
Q 020772 15 LFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGY--TKSKAIDLMTAKKLLPVSLFYNANVAF 92 (321)
Q Consensus 15 ~~~~~~~~~~~~~~~~~nK~~~~~~~~p~~i~~~r~~~~~l~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (321)
..+++.-.++..++..+.|..++..-.|..+.++|+.++.+++.++...++ ++.++.+++++..+...|++......+
T Consensus 15 ~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~~~~~ 94 (358)
T PLN00411 15 LTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSMYVIT 94 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 344445566677778899999975555778999999999988877654322 222334567777888888876556668
Q ss_pred hHhhccCccchHHHHHHHhHHHHHHHHHHHh------cCCcCCchhhhhHHHHhhhhhhhccc-cc--------------
Q 020772 93 ALASLKGVNIPMYIAIKRLTPLAVLVAGFFS------GKGKPTTQVTLSVLLTATGCVIAALG-DF-------------- 151 (321)
Q Consensus 93 ~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~------~ke~~~~~~~~ai~~~~~Gv~l~~~~-~~-------------- 151 (321)
.+.+++|++++.++++.++.|+++.++++++ +|||++++++.+++++++|+.+.... +.
T Consensus 95 ~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~ 174 (358)
T PLN00411 95 GYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFR 174 (358)
T ss_pred HHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccccccc
Confidence 8999999999999999999999999999999 69999999999999999999986531 10
Q ss_pred ---------ccc-hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCc-hhhhHhhhh
Q 020772 152 ---------SFD-LSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEF-PGSLSLLFS 220 (321)
Q Consensus 152 ---------~~~-~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 220 (321)
..+ ..|+.+++.|+++||.|++++|+..++++ +......++..++...+.+.....++. ...+ .
T Consensus 175 ~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~----~ 249 (358)
T PLN00411 175 QLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYP-AAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVW----I 249 (358)
T ss_pred ccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-cHhHHHHHHHHHHHHHHHHHHHHHccCCcccc----e
Confidence 112 45999999999999999999999876652 334556666666666665555544321 1110 1
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHH
Q 020772 221 KSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYS 300 (321)
Q Consensus 221 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~ 300 (321)
...+.. ...+++.++++.+....+++++++.+|.+++++.+++|++++++|++++|| ++++.+++|+++++.|+.+.+
T Consensus 250 ~~~~~~-~~~i~y~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE-~lt~~~~iG~~LIl~Gv~l~~ 327 (358)
T PLN00411 250 IHFDIT-LITIVTMAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLND-SLYLGCLIGGILITLGFYAVM 327 (358)
T ss_pred eccchH-HHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHH
Confidence 111223 234556666655444667799999999999999999999999999999998 999999999999999999988
Q ss_pred HHHHhhhhcC
Q 020772 301 YAKYQQKKKK 310 (321)
Q Consensus 301 ~~~~~~~~~~ 310 (321)
+.+++|.+++
T Consensus 328 ~~~~~~~~~~ 337 (358)
T PLN00411 328 WGKANEEKDQ 337 (358)
T ss_pred hhhhhhhhhc
Confidence 7666554433
No 6
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.97 E-value=3.1e-28 Score=217.04 Aligned_cols=270 Identities=29% Similarity=0.366 Sum_probs=229.4
Q ss_pred HHHHHHh-ccC--chHHHHHHHHHHHHHHHHHHHHcCccccCcCChhhhHHHHHHHHHHHHHHHHhHhhccCccchHHHH
Q 020772 31 INKAVIM-QYA--HSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIA 107 (321)
Q Consensus 31 ~nK~~~~-~~~--~p~~i~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~ 107 (321)
+.+.+.. +++ +|..+++.|..+..+.........+ .++.++..++.+++.++++.++..+.|.|++|+|.+..++
T Consensus 18 ~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~ 95 (303)
T PF08449_consen 18 LQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK--FPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIV 95 (303)
T ss_pred HHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc--ccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH
Confidence 4444443 333 5889999999999888777655443 1222344568889999999999999999999999999999
Q ss_pred HHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcccccc----c------chhHHHHHHHHHHHHHHHHHHHHh
Q 020772 108 IKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFS----F------DLSGYSMALTSVFFQTMYLVLVEK 177 (321)
Q Consensus 108 l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~~~----~------~~~G~~~~l~s~~~~a~~~v~~k~ 177 (321)
+|++.|+++++++.+++|||++++++.++++..+|+++...+|.+ . +..|+++.++|.+++|.+.+++||
T Consensus 96 ~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~ 175 (303)
T PF08449_consen 96 FKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEK 175 (303)
T ss_pred HhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999997654321 1 124999999999999999999999
Q ss_pred hcCCCCCCHHHHHHHHhhhHHHHHHHHHHH--hCCchhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 020772 178 SGAEDGLSSVEIMFYNSFLSLPFLVFLIIV--TGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSAL 255 (321)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~ 255 (321)
..++++.++.+.++|++.++.+...+..+. .+|..+..+... .++..+..++..++.+...+.+.+..+++.+|+
T Consensus 176 ~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~---~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al 252 (303)
T PF08449_consen 176 LFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFIS---AHPSVLLYLLLFSLTGALGQFFIFYLIKKFSAL 252 (303)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 999999999999999999999999998888 666655544322 244567788888999999888888999999999
Q ss_pred HHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHHHHhh
Q 020772 256 TTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQQ 306 (321)
Q Consensus 256 ~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~~~~~ 306 (321)
+.+++..++++.++++++++||| ++++.||+|+++++.|..+|++.|+++
T Consensus 253 ~~t~v~t~Rk~~sillS~~~f~~-~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 253 TTTIVTTLRKFLSILLSVIIFGH-PLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCC-cCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 99999999999999999999997 999999999999999999999887654
No 7
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.97 E-value=6.1e-28 Score=214.38 Aligned_cols=271 Identities=14% Similarity=0.114 Sum_probs=200.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHcCccccCcCChhhhHHHHHHHHHHHH
Q 020772 9 ISPFLGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNA 88 (321)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~nK~~~~~~~~p~~i~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (321)
+..+..+.++++|+.... ..|...++.+ |..+.++|+.++.+++.++.. . ++.++++++.....++.+..
T Consensus 4 ~~~l~~l~a~~~Wg~~~~----~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~~--~---~~~~~~~~~~~~~~~l~~~~ 73 (295)
T PRK11689 4 KATLIGLIAILLWSTMVG----LIRGVSESLG-PVGGAAMIYSVSGLLLLLTVG--F---PRLRQFPKRYLLAGGLLFVS 73 (295)
T ss_pred chhHHHHHHHHHHHHHHH----HHHHHHccCC-hHHHHHHHHHHHHHHHHHHcc--c---cccccccHHHHHHHhHHHHH
Confidence 335566777888888666 7888887765 899999999999888776531 1 11122222344444444556
Q ss_pred HHHHhHhhc----cCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhccccc-----------cc
Q 020772 89 NVAFALASL----KGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDF-----------SF 153 (321)
Q Consensus 89 ~~~~~~~al----~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~~-----------~~ 153 (321)
...+.+.++ ++++++.+.++.++.|+++.+++++++|||++++++.+++++++|+.+...++. +.
T Consensus 74 ~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~ 153 (295)
T PRK11689 74 YEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIAS 153 (295)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhcccc
Confidence 666666555 457888899999999999999999999999999999999999999998765432 12
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHH
Q 020772 154 DLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILIL 233 (321)
Q Consensus 154 ~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 233 (321)
+..|+.+++.+++|||.|.++.||..++. ++.... . ..+.+.+.+.....++.. ...+...|..+++
T Consensus 154 ~~~G~~~~l~aa~~~A~~~v~~k~~~~~~--~~~~~~--~-~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~l~~ 220 (295)
T PRK11689 154 NPLSYGLAFIGAFIWAAYCNVTRKYARGK--NGITLF--F-ILTALALWIKYFLSPQPA--------MVFSLPAIIKLLL 220 (295)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhhccCCC--CchhHH--H-HHHHHHHHHHHHHhcCcc--------ccCCHHHHHHHHH
Confidence 35699999999999999999999986554 555432 2 223333333333332211 1123344656666
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHHH
Q 020772 234 SLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAK 303 (321)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~~ 303 (321)
.++.+.+...++++++++.+|.+.+.+.+++|+++++++++++|| ++|+.+++|+++++.|+.+....+
T Consensus 221 ~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE-~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 221 AAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLST-PLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHhHHHHhhhH
Confidence 776555555777899999999999999999999999999999998 999999999999999988775544
No 8
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.97 E-value=2.3e-27 Score=210.44 Aligned_cols=271 Identities=13% Similarity=0.059 Sum_probs=214.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHcCccccCcCChhhhHHHHHHHHHH-HHHHHHh
Q 020772 15 LFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFY-NANVAFA 93 (321)
Q Consensus 15 ~~~~~~~~~~~~~~~~~nK~~~~~~~~p~~i~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 93 (321)
+...+.|+.... ..|....+.+ |..+.++|+.++.+++.++...++.+ ..++++++.....|.+. .....+.
T Consensus 14 ~~~~~iWg~~~~----~~K~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~ 86 (292)
T PRK11272 14 FALYIIWGSTYL----VIRIGVESWP-PLMMAGVRFLIAGILLLAFLLLRGHP--LPTLRQWLNAALIGLLLLAVGNGMV 86 (292)
T ss_pred HHHHHHHhhHHH----HHHHHhccCC-HHHHHHHHHHHHHHHHHHHHHHhCCC--CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666555 7788776544 88899999999988877765543322 23466777777777764 4667778
Q ss_pred Hhhc-cCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhccc-ccccchhHHHHHHHHHHHHHHH
Q 020772 94 LASL-KGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALG-DFSFDLSGYSMALTSVFFQTMY 171 (321)
Q Consensus 94 ~~al-~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~-~~~~~~~G~~~~l~s~~~~a~~ 171 (321)
+++. ++++++.++++.++.|+++++++.+ +|||++++++.+++++++|+.+...+ +.+.+..|+.+++.++++||.|
T Consensus 87 ~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~ 165 (292)
T PRK11272 87 TVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFG 165 (292)
T ss_pred HHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHH
Confidence 8888 9999999999999999999999986 69999999999999999999987643 3345567999999999999999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHHHHHHH-HHHHHHHh
Q 020772 172 LVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILN-FTMFLCTI 250 (321)
Q Consensus 172 ~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~ 250 (321)
.+..||..++ ++.....++...+.+.+.+.....++... ...+...|..+++.++++.... ..++++++
T Consensus 166 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~ 235 (292)
T PRK11272 166 SVWSSRLPLP---VGMMAGAAEMLAAGVVLLIASLLSGERLT-------ALPTLSGFLALGYLAVFGSIIAISAYMYLLR 235 (292)
T ss_pred HHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHcCCccc-------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999997543 34556678888888888777665433211 1113455777777788777666 56678999
Q ss_pred ccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHHHH
Q 020772 251 VNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKY 304 (321)
Q Consensus 251 ~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~~~ 304 (321)
+.++.+.+.+.+++|+.+.+++++++|| ++|+.+++|+.+++.|+.+.+++++
T Consensus 236 ~~~~~~~s~~~~l~Pi~a~i~~~~~l~E-~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 236 NVRPALATSYAYVNPVVAVLLGTGLGGE-TLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999998 9999999999999999988766543
No 9
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.97 E-value=1.5e-27 Score=211.96 Aligned_cols=284 Identities=12% Similarity=0.055 Sum_probs=200.7
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHcCcc-cc--CcC-ChhhhHHHHH
Q 020772 6 DAEISPFLGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYT-KS--KAI-DLMTAKKLLP 81 (321)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~nK~~~~~~~~p~~i~~~r~~~~~l~l~~~~~~~~~-~~--~~~-~~~~~~~~~~ 81 (321)
+..++....++++++|+.... ..|.. .+.+ |..+.++|+.++.+++..+...++. +. ++. +++++.....
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~----~~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPA----YFKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAV 78 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHH----HHHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHH
Confidence 334455556667777777655 55764 3444 7889999999998766554332211 11 011 2333333334
Q ss_pred HHHHHHHHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcccccccchhHHHHH
Q 020772 82 VSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFSFDLSGYSMA 161 (321)
Q Consensus 82 ~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~~~~~~~G~~~~ 161 (321)
.++....+..++++|++++|++.++++.++.|+++++++++++|||++++++.+++++++|+.+...++.+. ..++
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~----~~~~ 154 (296)
T PRK15430 79 SAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL----PIIA 154 (296)
T ss_pred HHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc----cHHH
Confidence 445577889999999999999999999999999999999999999999999999999999999976443222 2568
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHHHHHH
Q 020772 162 LTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIIL 241 (321)
Q Consensus 162 l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 241 (321)
+.++++||.|.+..||..++...+......++...+.+...+. .++.... ....+...+..++..++.+.+.
T Consensus 155 l~aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~~~g~~t~i~ 226 (296)
T PRK15430 155 LGLAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIYLFAI---ADSSTSH-----MGQNPMSLNLLLIAAGIVTTVP 226 (296)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHH---ccCCccc-----ccCCcHHHHHHHHHHHHHHHHH
Confidence 8899999999999998754322233444445554444433221 1111110 0111122244455556666666
Q ss_pred HHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020772 242 NFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQQKK 308 (321)
Q Consensus 242 ~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~~~~~~~ 308 (321)
..++++++++.+|.+.+.+.+++|+++.++|++++|| ++++.+++|+++++.|+.+.........|
T Consensus 227 ~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E-~~~~~~~~G~~lI~~~~~v~~~~~~~~~~ 292 (296)
T PRK15430 227 LLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGE-KPGADKMVTFAFIWVALAIFVMDAIYTQR 292 (296)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6788899999999999999999999999999999998 99999999999999998887766544433
No 10
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.96 E-value=8.1e-27 Score=207.67 Aligned_cols=277 Identities=11% Similarity=0.114 Sum_probs=205.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHcCccccCcCChhhhHHHHHHHHHH-HHH
Q 020772 11 PFLGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFY-NAN 89 (321)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~nK~~~~~~~~p~~i~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 89 (321)
.+..+..+++|+.... ..|...++.+ |..+.++|+.++++.+.++.. + ++.++ +.....|++. ...
T Consensus 6 ~l~~l~~~~~Wg~~~~----~~k~~~~~~~-p~~~~~~R~~~a~~~l~~~~~--~---~~~~~---~~~~~~g~~~~~~~ 72 (299)
T PRK11453 6 GVLALLVVVVWGLNFV----VIKVGLHNMP-PLMLAGLRFMLVAFPAIFFVA--R---PKVPL---NLLLGYGLTISFGQ 72 (299)
T ss_pred HHHHHHHHHHHhhhHH----HHHHHHhcCC-HHHHHHHHHHHHHHHHHHHhc--C---CCCch---HHHHHHHHHHHHHH
Confidence 4556777778888777 6687776655 888999999998766554332 1 11222 3445556543 344
Q ss_pred HHHhHhhccC-ccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcccc---cccchhHHHHHHHHH
Q 020772 90 VAFALASLKG-VNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGD---FSFDLSGYSMALTSV 165 (321)
Q Consensus 90 ~~~~~~al~~-~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~---~~~~~~G~~~~l~s~ 165 (321)
..+.+.++++ .|++.+.++.++.|+++.+++++++|||++++++.+++++++|+.+...++ .+.+..|+.+++.++
T Consensus 73 ~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aa 152 (299)
T PRK11453 73 FAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAA 152 (299)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHH
Confidence 4566778887 688999999999999999999999999999999999999999999876532 223457999999999
Q ss_pred HHHHHHHHHHHhhcCCCC-CCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHHHHHHHHH
Q 020772 166 FFQTMYLVLVEKSGAEDG-LSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFT 244 (321)
Q Consensus 166 ~~~a~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 244 (321)
++|+.|.++.||..++.+ .+......++...+.+...+.....++.... ... ....+...|..+++.++++....+.
T Consensus 153 l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~l~i~~t~~~~~ 230 (299)
T PRK11453 153 FSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATM-IHS-LVTIDMTTILSLMYLAFVATIVGYG 230 (299)
T ss_pred HHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhh-hhh-hccCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999765431 2223444555555544444433333222111 000 1123456688888999998888754
Q ss_pred -HHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHHH
Q 020772 245 -MFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAK 303 (321)
Q Consensus 245 -~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~~ 303 (321)
+++++++.++.+.+.+..++|+.+.+++++++|| +++..+++|.++++.|+.+..+.+
T Consensus 231 l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE-~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 231 IWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDE-RLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHHHHHHhcch
Confidence 5589999999999999999999999999999998 999999999999999988765544
No 11
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.96 E-value=2e-26 Score=204.42 Aligned_cols=263 Identities=15% Similarity=0.107 Sum_probs=202.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHcCccccCcCChhhhHHHHHHHHHHHHHHHHh
Q 020772 14 GLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFA 93 (321)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~nK~~~~~~~~p~~i~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (321)
.+++++.|+. .....|+..++.+ |..+.++|+.++.+++.++...++ ++.++++++.....|+++.....+.
T Consensus 17 ~~la~~~~~~----~~~~~K~~~~~~~-~~~~~~~R~~~a~l~l~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~ 88 (293)
T PRK10532 17 LLIAMASIQS----GASLAKSLFPLVG-APGVTALRLALGTLILIAIFKPWR---LRFAKEQRLPLLFYGVSLGGMNYLF 88 (293)
T ss_pred HHHHHHHHHh----hHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhHHh---ccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 4447899987755 777999999999988776543222 2345677788888888888888899
Q ss_pred HhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhccc---ccccchhHHHHHHHHHHHHHH
Q 020772 94 LASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALG---DFSFDLSGYSMALTSVFFQTM 170 (321)
Q Consensus 94 ~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~---~~~~~~~G~~~~l~s~~~~a~ 170 (321)
+++++|+|++.+.++..+.|+++.+++ +||+++ ..++.++++|+.+...+ ..+.+..|+.+.+.++++||.
T Consensus 89 ~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~--~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~ 162 (293)
T PRK10532 89 YLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVD--FVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAI 162 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHH--HHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 355544 44566778999886532 223456799999999999999
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHHHHHHHH-HHHHHH
Q 020772 171 YLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNF-TMFLCT 249 (321)
Q Consensus 171 ~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~ 249 (321)
|.+..||..++. ++... .+....+.+.+.|.....++ + . ..+...|...++.++++...++ .+++++
T Consensus 163 ~~v~~r~~~~~~--~~~~~-~~~~~~~~~~l~~~~~~~~~--~------~-~~~~~~~~~~l~lgv~~t~~~~~l~~~~~ 230 (293)
T PRK10532 163 YILSGQRAGAEH--GPATV-AIGSLIAALIFVPIGALQAG--E------A-LWHWSILPLGLAVAILSTALPYSLEMIAL 230 (293)
T ss_pred HHHHHHHHhccC--CchHH-HHHHHHHHHHHHHHHHHccC--c------c-cCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999986654 55555 45566777777776655422 1 0 1133445556678888887775 557999
Q ss_pred hccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHHH
Q 020772 250 IVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAK 303 (321)
Q Consensus 250 ~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~~ 303 (321)
++.+|.+++++.+++|+++.++|++++|| +++..+++|.++++.|...+.+..
T Consensus 231 ~~~~a~~as~~~~l~Pv~a~l~~~l~lgE-~~~~~~~iG~~lIl~~~~~~~~~~ 283 (293)
T PRK10532 231 TRLPTRTFGTLMSMEPALAAVSGMIFLGE-TLTLIQWLALGAIIAASMGSTLTI 283 (293)
T ss_pred HhcChhHHHHHHHhHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999998 999999999999999998887654
No 12
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.96 E-value=7.8e-27 Score=203.92 Aligned_cols=252 Identities=16% Similarity=0.135 Sum_probs=203.8
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHcCccccCcCChhhhHHHHHHHHH-HHHHHHHhHhhccCccchHHHH
Q 020772 29 VFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLF-YNANVAFALASLKGVNIPMYIA 107 (321)
Q Consensus 29 ~~~nK~~~~~~~~p~~i~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~~ 107 (321)
....|..+++...|..+.++|...+.+.+.+....+ .+++++++....|.+ ......+.++|++|++++.+++
T Consensus 5 ~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~i 78 (260)
T TIGR00950 5 GVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAAL 78 (260)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHH
Confidence 347898887666677799999998888776654333 234455566666654 6788899999999999999999
Q ss_pred HHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcccc-cccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCH
Q 020772 108 IKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGD-FSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSS 186 (321)
Q Consensus 108 l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~-~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~ 186 (321)
+.++.|+++++++.+++|||++++++.+++++++|+.+...++ .+.+..|+.+++.++++|+.+.+..|+..++.+.++
T Consensus 79 i~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~ 158 (260)
T TIGR00950 79 LLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPEL 158 (260)
T ss_pred HHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchH
Confidence 9999999999999999999999999999999999999976543 345678999999999999999999999877654345
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHHHHHHH-HHHHHHHhccchhHHHHHhhhhH
Q 020772 187 VEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILN-FTMFLCTIVNSALTTTIVGVLKG 265 (321)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~a~~~s~~~~~~~ 265 (321)
.....+....+.+.+.+.....++... .+...|..++..++++.... .+.++++++.++.+.+.+.+++|
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~p 229 (260)
T TIGR00950 159 LQFTGWVLLLGALLLLPFAWFLGPNPQ---------ALSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEP 229 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCC---------cchHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 555556788888888887766543211 13344666777777766555 55678999999999999999999
Q ss_pred HHHHHhhhheeCccccchhhhHHHHHHHHHH
Q 020772 266 VGSTTLGFVVLGGVQVRALNVTGLLINTAGG 296 (321)
Q Consensus 266 v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~ 296 (321)
+.+.+++++++|| +++..+++|..+++.|+
T Consensus 230 v~~~ll~~~~~~E-~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 230 LVALLLGLLILGE-TLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHhCC-CCCHHHHHHHHHHHHhc
Confidence 9999999999998 99999999999999885
No 13
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.95 E-value=1.4e-26 Score=186.52 Aligned_cols=288 Identities=24% Similarity=0.375 Sum_probs=250.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCch--HHHHHHHHHHHHHHHHHHHHcCccccCcCChhhhHHHHHHHHHHHHHHHH
Q 020772 15 LFAALSYGVSSMAMVFINKAVIMQYAHS--MTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAF 92 (321)
Q Consensus 15 ~~~~~~~~~~~~~~~~~nK~~~~~~~~p--~~i~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (321)
....+.|+.+++.+++.||++++.-++. ..+.+.|.+++.+.+.++.+.+..+.| ..+.|.++|.+++...+++.
T Consensus 8 ~~~~lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR---~t~aK~WfpiSfLLv~MIyt 84 (309)
T COG5070 8 LTASLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFR---LTKAKKWFPISFLLVVMIYT 84 (309)
T ss_pred chHHHHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhhee---hhhhhhhcCHHHHHHHHHHh
Confidence 4567789999999999999999865554 448999999999998888877765554 45678999999999999999
Q ss_pred hHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhccccc--------ccchhHHHHHHHH
Q 020772 93 ALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDF--------SFDLSGYSMALTS 164 (321)
Q Consensus 93 ~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~~--------~~~~~G~~~~l~s 164 (321)
...+++|++++.+++.+.++.+.++..+.+++|.|++.....+.+++++.-....++|. ..+ .|.+|+...
T Consensus 85 ~SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN-~GY~Wm~~N 163 (309)
T COG5070 85 SSKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILN-PGYLWMFTN 163 (309)
T ss_pred cccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccC-CceEEEehh
Confidence 99999999999999999999999999999999999999999999999988888887776 334 699999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHHHHHHHHH
Q 020772 165 VFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFT 244 (321)
Q Consensus 165 ~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 244 (321)
++..+++....|+-.+-.+....+.++|+++++.++++.+.+.++|+...- ............++++|+++.+..++
T Consensus 164 clssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n---~annl~~d~l~am~ISgl~svgiSy~ 240 (309)
T COG5070 164 CLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGN---LANNLSVDSLMAMFISGLCSVGISYC 240 (309)
T ss_pred hHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcch---hhcCCChHHHHHHHHHHHHHhhhhhc
Confidence 999999999999887766778899999999999999999999987754331 12222344466788999999999999
Q ss_pred HHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHHHHhhhhcC
Q 020772 245 MFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQQKKKK 310 (321)
Q Consensus 245 ~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~~~~~~~~~ 310 (321)
.-++.+.+++++.++++.+++....+.|.++|+| +.+...+..+.+-.++..+|...+.++++++
T Consensus 241 saWcvrVtSSTtySMvGALNKlp~alaGlvffda-p~nf~si~sillGflsg~iYavaks~k~q~q 305 (309)
T COG5070 241 SAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDA-PVNFLSIFSILLGFLSGAIYAVAKSKKQQNQ 305 (309)
T ss_pred cceeEeehhhhHHHHHHHhhhChHHHhhhhhcCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999997 9999999999999999999999876654443
No 14
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.95 E-value=2.3e-25 Score=197.09 Aligned_cols=269 Identities=13% Similarity=0.040 Sum_probs=203.6
Q ss_pred HHHHHHHHh-ccCchHHHHHHHHHHHHHHHHHHHHcCc--cccCcCChhhhHHHHHHHHHHHHHHHHhHhhccCccchHH
Q 020772 29 VFINKAVIM-QYAHSMTLLTLQQLATALLIQAGRQMGY--TKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMY 105 (321)
Q Consensus 29 ~~~nK~~~~-~~~~p~~i~~~r~~~~~l~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~ 105 (321)
...++.+.+ +.+.|.+-+++-+....++.......+. .+..+..++++.+.+..|++....+++.+.|++|++++.+
T Consensus 29 ~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~ 108 (334)
T PF06027_consen 29 GTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDVEANYLVVLAYQYTSVTSV 108 (334)
T ss_pred HHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHHHHHHHHHHHhhcccHhHH
Confidence 334444443 3455766444444443333333222222 1222233455667777899999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhccccc---------ccchhHHHHHHHHHHHHHHHHHHHH
Q 020772 106 IAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDF---------SFDLSGYSMALTSVFFQTMYLVLVE 176 (321)
Q Consensus 106 ~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~~---------~~~~~G~~~~l~s~~~~a~~~v~~k 176 (321)
+++.+++.+++++++++++|+|+++.|+.|+++++.|+++....|. +....|+++++.++++||.+++++|
T Consensus 109 ~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E 188 (334)
T PF06027_consen 109 QLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGDLLALLGAILYAVSNVLEE 188 (334)
T ss_pred HhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998765431 2347899999999999999999999
Q ss_pred hhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhH
Q 020772 177 KSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALT 256 (321)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~ 256 (321)
+..++. +..+...+..+++.++..+..... |..+.. +..++...+..++..+++-+......-..++..+|+.
T Consensus 189 ~~v~~~--~~~~~lg~~Glfg~ii~~iq~~il-e~~~i~----~~~w~~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~ 261 (334)
T PF06027_consen 189 KLVKKA--PRVEFLGMLGLFGFIISGIQLAIL-ERSGIE----SIHWTSQVIGLLVGYALCLFLFYSLVPIVLRMSSATF 261 (334)
T ss_pred HhcccC--CHHHHHHHHHHHHHHHHHHHHHhe-ehhhhh----ccCCChhhHHHHHHHHHHHHHHHHHHHHHHHhCccce
Confidence 998875 788999999999999998877765 443332 2223444444444444443444444456789999999
Q ss_pred HHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHHHHh
Q 020772 257 TTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQ 305 (321)
Q Consensus 257 ~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~~~~ 305 (321)
.++-..+..+.+++.+++++|+ ++++..++|.+++++|.++|+..+.+
T Consensus 262 ~nLsLLTsd~~ali~~i~~f~~-~~~~ly~~af~lIiiG~vvy~~~~~~ 309 (334)
T PF06027_consen 262 FNLSLLTSDFYALIIDIFFFGY-KFSWLYILAFALIIIGFVVYNLAESP 309 (334)
T ss_pred eehHHHHhhHHHHHHHHHhcCc-cccHHHHHHHHHHHHHhheEEccCCc
Confidence 9998888999999999999997 99999999999999999999876543
No 15
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=6.5e-28 Score=199.80 Aligned_cols=295 Identities=21% Similarity=0.264 Sum_probs=258.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----ccCchHHHHHHHHHHHHHHHHHHHHc-----CccccC--cCChhhhHHHHHHH
Q 020772 15 LFAALSYGVSSMAMVFINKAVIM----QYAHSMTLLTLQQLATALLIQAGRQM-----GYTKSK--AIDLMTAKKLLPVS 83 (321)
Q Consensus 15 ~~~~~~~~~~~~~~~~~nK~~~~----~~~~p~~i~~~r~~~~~l~l~~~~~~-----~~~~~~--~~~~~~~~~~~~~~ 83 (321)
......|-.+++++++.||++++ +.+-|.++++.|-++...+...+... +....+ +++.+..++..|.+
T Consensus 30 ~~~vs~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlpls 109 (347)
T KOG1442|consen 30 DSAVSLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLS 109 (347)
T ss_pred hhhccceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchh
Confidence 34555677889999999999996 45679999999999887776665432 111222 35567788999999
Q ss_pred HHHHHHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcccc---cccchhHHHH
Q 020772 84 LFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGD---FSFDLSGYSM 160 (321)
Q Consensus 84 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~---~~~~~~G~~~ 160 (321)
+.+.+++.+.|++++|++++++.+-+++..+|+.+++++++|+|-+..-..+..+++.|..+....| ...++.|.++
T Consensus 110 vVfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~Gvif 189 (347)
T KOG1442|consen 110 VVFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIF 189 (347)
T ss_pred heeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHH
Confidence 9999999999999999999999999999999999999999999999999999999999988876544 4568999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHHHHH
Q 020772 161 ALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGII 240 (321)
Q Consensus 161 ~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 240 (321)
++.|.++-|...+..||.....+...+...+|++..+.++++|.....||...... ++..++..+|....++|++++.
T Consensus 190 GVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~--~~~l~a~~Fw~~mtLsglfgF~ 267 (347)
T KOG1442|consen 190 GVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVG--FPHLPAIKFWILMTLSGLFGFA 267 (347)
T ss_pred HHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcC--cccchHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988777788999999999999999999999999877654 3566678899999999999999
Q ss_pred HHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 020772 241 LNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQQKKKKLP 312 (321)
Q Consensus 241 ~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~~~~~~~~~~~ 312 (321)
.++...+-+|.+||.+..+-+..|...+.++++.+++| .-+..-|-|-++++.|..+|.+.|+.+.+++.+
T Consensus 268 mgyvTg~QIK~TSplThnISgTAka~aQTvlAv~~y~E-~ks~lwwtsn~~vLvgs~~YT~vk~~em~~~~~ 338 (347)
T KOG1442|consen 268 MGYVTGWQIKVTSPLTHNISGTAKAAAQTVLAVAYYSE-TKSGLWWTSNIVVLVGSLAYTLVKEHEMRKASA 338 (347)
T ss_pred hhheeeEEEEecccceeeecHhHHHHHHHHHHHHHHHH-HhhhheeeeeEEEEehhHHHHHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999998 999999999999999999999988777655433
No 16
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.93 E-value=1.4e-24 Score=183.05 Aligned_cols=287 Identities=20% Similarity=0.248 Sum_probs=241.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHc-Ccccc---CcCChh-hhHHHHHHHHHHHH
Q 020772 14 GLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQM-GYTKS---KAIDLM-TAKKLLPVSLFYNA 88 (321)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~nK~~~~~~~~p~~i~~~r~~~~~l~l~~~~~~-~~~~~---~~~~~~-~~~~~~~~~~~~~~ 88 (321)
.+..+..|..+|+++..++|+.-.++++|.+++..|+.+-.+......+. +...+ ...+|+ ..++..|.|+..+.
T Consensus 17 ~L~lVl~yY~~Si~Ltf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~ 96 (349)
T KOG1443|consen 17 TLALVLLYYFLSIGLTFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATAL 96 (349)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhc
Confidence 34555789999999999999999999999999999999888776665442 22122 255665 57788899999999
Q ss_pred HHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcccccccchhHHHHHHHHHHHH
Q 020772 89 NVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFSFDLSGYSMALTSVFFQ 168 (321)
Q Consensus 89 ~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~ 168 (321)
.+.+.|++++|++.+.+++.|+.+++|+.+++.++--||+++.-.+.+.++..|+++.+..+.+++..|..+...|.++.
T Consensus 97 DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~aS~~s 176 (349)
T KOG1443|consen 97 DIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLAASLLS 176 (349)
T ss_pred ccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHHHHHhh
Confidence 99999999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCC---CCHHHHHHHHhhhHHHHHHHHHHHhCCchh-hhHhhhhccCc---hHHHHHHHHHHHHHHHH
Q 020772 169 TMYLVLVEKSGAEDG---LSSVEIMFYNSFLSLPFLVFLIIVTGEFPG-SLSLLFSKSNS---FSFLVILILSLVMGIIL 241 (321)
Q Consensus 169 a~~~v~~k~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~i~~~~~~~~~~ 241 (321)
++...+.|.++++.+ -+|...+++..+.....++|..+..|.... ..+..+...++ ......+...|..+++.
T Consensus 177 GlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv~g~i~l~g~laF~l 256 (349)
T KOG1443|consen 177 GLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRVIGLISLGGLLAFLL 256 (349)
T ss_pred hhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHHHHHHHHHHHHHHHH
Confidence 999999988876543 578899999999888888888876643322 22222222222 23355567778888888
Q ss_pred HHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHH
Q 020772 242 NFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSY 301 (321)
Q Consensus 242 ~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~ 301 (321)
..+.+....+++..+.++.+..+.+++.+++..+.+| ++|..+|.|..+.+.|+..|.+
T Consensus 257 ~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d-~ls~lN~~Gl~i~~agi~~~~~ 315 (349)
T KOG1443|consen 257 EFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKD-QLSLLNWLGLAICLAGILLHRN 315 (349)
T ss_pred HHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHHHHhcc
Confidence 8888999999999999999999999999999999998 9999999999999999999844
No 17
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.91 E-value=2.3e-22 Score=177.51 Aligned_cols=259 Identities=13% Similarity=0.017 Sum_probs=178.5
Q ss_pred HHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHcC--ccccCcCChhhhHHHHHHHHHHHHHHHHhHhhccCccchH
Q 020772 27 AMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMG--YTKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPM 104 (321)
Q Consensus 27 ~~~~~nK~~~~~~~~p~~i~~~r~~~~~l~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~ 104 (321)
......|...++ ..+ ..+++.....+++.+....+ ..+.++.+++.+......+........+.++|+++.|++.
T Consensus 15 ~~~~~~k~~~~~-~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 91 (281)
T TIGR03340 15 GWNLMAKSHADK-EPD--FLWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGLAQAYHHADVGL 91 (281)
T ss_pred HHHHHHhhcCCc-hhH--HHHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhcCChhh
Confidence 344467755544 223 34666666666655544432 2122223344444555556667888999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhccccc-ccchhHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 020772 105 YIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDF-SFDLSGYSMALTSVFFQTMYLVLVEKSGAEDG 183 (321)
Q Consensus 105 ~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~~-~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~ 183 (321)
.+.+.++.|+++.+++++++|||++++++.++.+++.|+.+...++. +.+..|+.+++.++++|+.|.+..|+..++.
T Consensus 92 ~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~i~~k~~~~~~- 170 (281)
T TIGR03340 92 VYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYSLSDKAAALGV- 170 (281)
T ss_pred hhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhhhccccccch-
Confidence 99999999999999999999999999999999999999998765432 3455788899999999999999988764332
Q ss_pred CCHHH----HHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHH
Q 020772 184 LSSVE----IMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTI 259 (321)
Q Consensus 184 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~s~ 259 (321)
++.. ...+........+.+.....++.. ....+...+..+...++.+.....++++++++.++...+.
T Consensus 171 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~ 242 (281)
T TIGR03340 171 -PAFYSALGYLGIGFLAMGWPFLLLYLKRHGRS-------MFPYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVA 242 (281)
T ss_pred -hcccccHHHHHHHHHHHHHHHHHHHHHHhccc-------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEe
Confidence 2221 222222222111111111111110 0011122333344444444445567789999999999999
Q ss_pred HhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHH
Q 020772 260 VGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVW 298 (321)
Q Consensus 260 ~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~ 298 (321)
..+++|+++.++|++++|| +++..+++|..+++.|+.+
T Consensus 243 ~~~l~pv~a~l~g~~~lgE-~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 243 LRNTSIVFAVVLGIWFLNE-RWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred ecccHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHhHHh
Confidence 9999999999999999998 9999999999999999865
No 18
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.91 E-value=1.3e-21 Score=170.59 Aligned_cols=246 Identities=12% Similarity=0.099 Sum_probs=172.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHH-cCcc-----ccCcCChhh-hHHHHHH
Q 020772 10 SPFLGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQ-MGYT-----KSKAIDLMT-AKKLLPV 82 (321)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~nK~~~~~~~~p~~i~~~r~~~~~l~l~~~~~-~~~~-----~~~~~~~~~-~~~~~~~ 82 (321)
+....+.+++.|+..+. ..|. ..+.+ |..+.++|++++.+++.++.. .++. +.++.++++ +......
T Consensus 3 g~~~~i~a~~~wg~~~~----~~k~-~~~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYY----YSKL-LKPLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLC 76 (256)
T ss_pred cHHHHHHHHHHHHHHHH----HHHH-hccCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHH
Confidence 34566777777887766 6776 34444 788999999999887665432 2211 111122222 3345667
Q ss_pred HHHHHHHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcccccccchhHHHHHH
Q 020772 83 SLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFSFDLSGYSMAL 162 (321)
Q Consensus 83 ~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~~~~~~~G~~~~l 162 (321)
|++...+..++++|+++++++.++++.++.|+++++++++++|||++++++++++++++|+.+...++.+.+ .+++
T Consensus 77 g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~~l 152 (256)
T TIGR00688 77 GLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WEAL 152 (256)
T ss_pred HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HHHH
Confidence 777889999999999999999999999999999999999999999999999999999999998755432222 3578
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHHHHHHH
Q 020772 163 TSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILN 242 (321)
Q Consensus 163 ~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 242 (321)
.++++|+.|.+..||..++ +..+.... .....+...+..... +.+.. +..++...|..++..++++....
T Consensus 153 ~aa~~~a~~~i~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~~~l~~~g~~t~i~~ 222 (256)
T TIGR00688 153 VLAFSFTAYGLIRKALKNT---DLAGFCLE-TLSLMPVAIYYLLQT-DFATV-----QQTNPFPIWLLLVLAGLITGTPL 222 (256)
T ss_pred HHHHHHHHHHHHHhhcCCC---CcchHHHH-HHHHHHHHHHHHHHh-ccCcc-----cccCchhHHHHHHHHHHHHHHHH
Confidence 8999999999999997543 22232222 112222222221111 11110 11112224666667777766656
Q ss_pred HHHHHHHhccchhHHHHHhhhhHHHHHHhhhhe
Q 020772 243 FTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVV 275 (321)
Q Consensus 243 ~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~ 275 (321)
.+...+.++.+|.+++.+.+++|+++.++++++
T Consensus 223 ~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 223 LAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 778899999999999999999999999999764
No 19
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.89 E-value=3.9e-20 Score=163.83 Aligned_cols=268 Identities=18% Similarity=0.160 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHcCccccCcCChhhhHHHHHHHHHHHHHHHHhHhhccCc
Q 020772 21 YGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGV 100 (321)
Q Consensus 21 ~~~~~~~~~~~nK~~~~~~~~p~~i~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~ 100 (321)
.+..........|....+...+....+.|...+..........+..+.++..++.+......++.......+++.+++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (292)
T COG0697 15 WGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLLLFLALKYT 94 (292)
T ss_pred HHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33333334445565554423344466779988887744443333211112222222344444555778899999999999
Q ss_pred cchHHHHHHHhHHHHHHHHHH-HhcCCcCCchhhhhHHHHhhhhhhhcccccccc---hhHHHHHHHHHHHHHHHHHHHH
Q 020772 101 NIPMYIAIKRLTPLAVLVAGF-FSGKGKPTTQVTLSVLLTATGCVIAALGDFSFD---LSGYSMALTSVFFQTMYLVLVE 176 (321)
Q Consensus 101 ~~~~~~~l~~~~pv~~~l~~~-l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~~~~~---~~G~~~~l~s~~~~a~~~v~~k 176 (321)
+++.++.+.++.|+++.+++. +++|||++++++.++.+.+.|+.++..++...+ ..|+.+.+.++++++.+.+..|
T Consensus 95 ~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~a~~~~~~~ 174 (292)
T COG0697 95 SASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLWALYTALVK 174 (292)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997 777999999999999999999999987665433 5899999999999999999999
Q ss_pred hhcCCCCCCHHHHHH-HHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHHHHH-HHHHHHHHHhccch
Q 020772 177 KSGAEDGLSSVEIMF-YNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGII-LNFTMFLCTIVNSA 254 (321)
Q Consensus 177 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~a 254 (321)
+.. + .++..... ++.........+.. ..+.. ...+...+..+...++++.. ...+.+++.++.++
T Consensus 175 ~~~-~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--------~~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~ 241 (292)
T COG0697 175 RLS-R--LGPVTLALLLQLLLALLLLLLFF--LSGFG--------APILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGA 241 (292)
T ss_pred Hhc-C--CChHHHHHHHHHHHHHHHHHHHH--hcccc--------ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 986 3 35556555 44331112222211 11111 11234557777788888886 44677799999999
Q ss_pred hHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHH
Q 020772 255 LTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYA 302 (321)
Q Consensus 255 ~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~ 302 (321)
...+.+..++|+.+.+++++++|| +++..+++|..+++.|+...+.+
T Consensus 242 ~~~~~~~~~~~v~~~~~~~l~~~e-~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 242 SLVALLSLLEPVFAALLGVLLLGE-PLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999998 99999999999999998887665
No 20
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.89 E-value=1.6e-22 Score=164.38 Aligned_cols=256 Identities=15% Similarity=0.115 Sum_probs=215.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHcCccccCcCChhhhHHHHHHHHHHHHHHHHhHhhccCccchHHHHHHHhHHHHHHHH
Q 020772 40 AHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVA 119 (321)
Q Consensus 40 ~~p~~i~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~ 119 (321)
.+...+.+.|-.+-.+..-++...+ +..++++-+-+.....++.|.+++...|.|++++|.++..+-+++-|+.++++
T Consensus 51 TfalaLVf~qC~~N~vfAkvl~~ir--~~~~~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMil 128 (337)
T KOG1580|consen 51 TFALALVFFQCTANTVFAKVLFLIR--KKTEIDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMIL 128 (337)
T ss_pred hHHHHHHHHHHHHHHHHHHhheeec--ccccccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeee
Confidence 3445577777776666654443322 22234443446778888999999999999999999999999999999999999
Q ss_pred HHHhcCCcCCchhhhhHHHHhhhhhhhcccc-------cccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Q 020772 120 GFFSGKGKPTTQVTLSVLLTATGCVIAALGD-------FSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFY 192 (321)
Q Consensus 120 ~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~-------~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~ 192 (321)
+.++.|++.++++++.+++++.|+++....+ .+....|-++.++|.-..+.....++|+.+.+.-+..+++++
T Consensus 129 GVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~ 208 (337)
T KOG1580|consen 129 GVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFY 208 (337)
T ss_pred ehhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHH
Confidence 9999999999999999999999999965532 122357999999999999999999999987777788999999
Q ss_pred HhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhh
Q 020772 193 NSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLG 272 (321)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~ 272 (321)
.++.+.+.+....+++||.++.... ..+.+..|+-+...++.+.+.+.+.+.-+..++|.+-|++...++.++++.+
T Consensus 209 ~NlwStL~Lg~g~lfTGElweF~yF---~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~S 285 (337)
T KOG1580|consen 209 TNLWSTLYLGAGLLFTGELWEFFYF---VQRHPYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILIS 285 (337)
T ss_pred HHHHHHHHhhhhheehhhHHHHHHH---HHhccHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHH
Confidence 9999999999999999998876442 2335667888999999999999999999999999999999999999999999
Q ss_pred hheeCccccchhhhHHHHHHHHHHHHHHH
Q 020772 273 FVVLGGVQVRALNVTGLLINTAGGVWYSY 301 (321)
Q Consensus 273 ~~~~~e~~~t~~~~iG~~lil~g~~~~~~ 301 (321)
+++|++ +++..||+|..+++.|...=..
T Consensus 286 Vllf~n-pls~rQwlgtvlVF~aL~~D~~ 313 (337)
T KOG1580|consen 286 VLLFNN-PLSGRQWLGTVLVFSALTADVV 313 (337)
T ss_pred HHHhcC-cCcHHHHHHHHHHHHHhhhHhh
Confidence 999996 9999999999999988765443
No 21
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.89 E-value=2.1e-20 Score=158.06 Aligned_cols=262 Identities=18% Similarity=0.144 Sum_probs=223.6
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHcCccccCcCChhhhHHHHHHHHHHHHHHHHhHhhccCccchHHHHHHHhHHHHHH
Q 020772 38 QYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVL 117 (321)
Q Consensus 38 ~~~~p~~i~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~ 117 (321)
.|..|.++.+.|-..+.+.-......+..+ .-.++.+......++.......+++.|++|++-++-.+.+++--+.++
T Consensus 47 rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~--~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVm 124 (327)
T KOG1581|consen 47 RFEHSLFLVFCQRLVALLVSYAMLKWWKKE--LSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVM 124 (327)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhccccc--CCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHH
Confidence 345578899999888887775554433322 223445677788899999999999999999999999999999999999
Q ss_pred HHHHHhcCCcCCchhhhhHHHHhhhhhhhccc---c------cccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHH
Q 020772 118 VAGFFSGKGKPTTQVTLSVLLTATGCVIAALG---D------FSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVE 188 (321)
Q Consensus 118 l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~---~------~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~ 188 (321)
+.+.++-|+|++.++++...++..|+.+.... | .+.++.|+.++..+.++.++.+..++++.++++.++++
T Consensus 125 lmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~ 204 (327)
T KOG1581|consen 125 LMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLH 204 (327)
T ss_pred HHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhH
Confidence 99999999999999999999999999985432 1 13458999999999999999999999999999999999
Q ss_pred HHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhHHHH
Q 020772 189 IMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGS 268 (321)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~ 268 (321)
++++.++++++......+..|...+..+.. ..+++.+.-++..++++...+.+.++-+++.++.+.+++..++.+++
T Consensus 205 mM~~vNLf~~i~~~~~li~qg~~~~av~F~---~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~s 281 (327)
T KOG1581|consen 205 MMFGVNLFSAILNGTYLILQGHLLPAVSFI---KEHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVS 281 (327)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCCchHHHHH---HcChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHH
Confidence 999999999999998877666666554432 22567788899999999999999999999999999999999999999
Q ss_pred HHhhhheeCccccchhhhHHHHHHHHHHHHHHHHHHh
Q 020772 269 TTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQ 305 (321)
Q Consensus 269 ~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~~~~ 305 (321)
++++.+.||+ +++..||+|..+++.|..+-...+.+
T Consensus 282 i~lS~i~f~h-~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 282 IMLSCIVFGH-PLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHHHHHHhCC-ccchhhccCeeeehHHHHHHHHHHHh
Confidence 9999999997 99999999999988887776666554
No 22
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.87 E-value=1.8e-19 Score=148.38 Aligned_cols=250 Identities=15% Similarity=0.114 Sum_probs=202.8
Q ss_pred HHHHHHhccCchHHHHHHHHHHHHHHHHHHHHcCccccCcCChhhhHHHHHHHHHHHHHHHHhHhhccCccchHHHHHHH
Q 020772 31 INKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKR 110 (321)
Q Consensus 31 ~nK~~~~~~~~p~~i~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~ 110 (321)
+.|.++...+ |...+.+|..++++++..+.+-.+ ++.++++++.....|.....++.+.+.+++.+|.+.+..+-.
T Consensus 30 ~Ak~LFP~vG-~~g~t~lRl~~aaLIll~l~RPwr---~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF 105 (292)
T COG5006 30 FAKSLFPLVG-AAGVTALRLAIAALILLALFRPWR---RRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEF 105 (292)
T ss_pred HHHHHccccC-hhhHHHHHHHHHHHHHHHHhhHHH---hccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhh
Confidence 5676665444 677999999999999888765332 456778889999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcccc---cccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHH
Q 020772 111 LTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGD---FSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSV 187 (321)
Q Consensus 111 ~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~---~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~ 187 (321)
+.|+.+.+++. + +.++...+.+.+.|+.+..-.. .+.|+.|..+++.++.||+.|.+..||..+. .|.-
T Consensus 106 ~GPL~vA~~~s----R--r~~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~~--~~g~ 177 (292)
T COG5006 106 TGPLAVALLSS----R--RLRDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRAGRA--EHGT 177 (292)
T ss_pred ccHHHHHHHhc----c--chhhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchhccc--CCCc
Confidence 99999988763 3 3345566677778888764332 4578999999999999999999999998753 2666
Q ss_pred HHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHH-HHHHhccchhHHHHHhhhhHH
Q 020772 188 EIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFTM-FLCTIVNSALTTTIVGVLKGV 266 (321)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~a~~~s~~~~~~~v 266 (321)
+-+..-+..+.++..|+...... +...++.....-+..++++..+.|.. ..+.++.++-+.+++..+||.
T Consensus 178 ~g~a~gm~vAaviv~Pig~~~ag---------~~l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa 248 (292)
T COG5006 178 AGVAVGMLVAALIVLPIGAAQAG---------PALFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPA 248 (292)
T ss_pred hHHHHHHHHHHHHHhhhhhhhcc---------hhhcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHH
Confidence 77778888888999998765422 22235566666678888888888654 688999999999999999999
Q ss_pred HHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHH
Q 020772 267 GSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYA 302 (321)
Q Consensus 267 ~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~ 302 (321)
.+.+.|++++|| .+|..||.|+.+++.++.-....
T Consensus 249 ~aAl~G~i~L~e-~ls~~qwlaI~~ViaAsaG~~lt 283 (292)
T COG5006 249 LAALSGLIFLGE-TLTLIQWLAIAAVIAASAGSTLT 283 (292)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhccccc
Confidence 999999999998 99999999999999988755444
No 23
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.84 E-value=2.9e-17 Score=139.09 Aligned_cols=285 Identities=14% Similarity=0.079 Sum_probs=214.5
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHc-Ccc-ccC--cCChhhhHHHH
Q 020772 5 TDAEISPFLGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQM-GYT-KSK--AIDLMTAKKLL 80 (321)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~nK~~~~~~~~p~~i~~~r~~~~~l~l~~~~~~-~~~-~~~--~~~~~~~~~~~ 80 (321)
++..++.+..+.+-+.||..-. +.|.+- .. .+..+...|..-+...+...... ++. ..+ ..+++.+....
T Consensus 3 ~~~~~Gil~~l~Ay~lwG~lp~----y~kll~-~~-~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~ 76 (293)
T COG2962 3 KDSRKGILLALLAYLLWGLLPL----YFKLLE-PL-PATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLA 76 (293)
T ss_pred CcccchhHHHHHHHHHHHHHHH----HHHHHc-cC-CHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHH
Confidence 4445666777777777777544 666554 22 36679999999887666654332 211 111 12233445555
Q ss_pred HHHHHHHHHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcccccccchhHHHH
Q 020772 81 PVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFSFDLSGYSM 160 (321)
Q Consensus 81 ~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~~~~~~~G~~~ 160 (321)
..++....++..+.+|.++-.+-.+++=....|.+..+++.+++|||+++.|++|+.+..+||..-.....+.++..+
T Consensus 77 l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval-- 154 (293)
T COG2962 77 LTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVAL-- 154 (293)
T ss_pred HHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHH--
Confidence 667778899999999999999999999999999999999999999999999999999999999998887777776544
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHHHHH
Q 020772 161 ALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGII 240 (321)
Q Consensus 161 ~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 240 (321)
.=+++|+.|... ||..+ .|+.+-.......-.+......+..++..+. -..++...+..++..|..+.+
T Consensus 155 --~la~sf~~Ygl~-RK~~~---v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~-----~~~~~~~~~~LLv~aG~vTav 223 (293)
T COG2962 155 --ALALSFGLYGLL-RKKLK---VDALTGLTLETLLLLPVALIYLLFLADSGQF-----LQQNANSLWLLLVLAGLVTAV 223 (293)
T ss_pred --HHHHHHHHHHHH-HHhcC---CchHHhHHHHHHHHhHHHHHHHHHHhcCchh-----hhcCCchHHHHHHHhhHHHHH
Confidence 446789999966 44433 4667766666666666666666666554431 111244557777777877776
Q ss_pred HHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHHHHhhhhc
Q 020772 241 LNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQQKKK 309 (321)
Q Consensus 241 ~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~~~~~~~~ 309 (321)
--.+...+.|+.+-.+.+++++++|....+++++++|| +++..++...+++-+|..+|.....+++++
T Consensus 224 pL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E-~~~~~~~~~F~~IW~aL~l~~~d~l~~~r~ 291 (293)
T COG2962 224 PLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGE-PFDSDQLVTFAFIWLALALFSIDGLYTARK 291 (293)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66666688999999999999999999999999999998 999999999999999999999877655544
No 24
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.82 E-value=8.6e-18 Score=148.63 Aligned_cols=262 Identities=16% Similarity=0.139 Sum_probs=186.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHcCccccCcCChhhhHHHHHHHHHHHHHHH
Q 020772 12 FLGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVA 91 (321)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~nK~~~~~~~~p~~i~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (321)
+..++++++|+.... ..|.+. +.+.+. +. |..++.+++..+....+ +++...++.+..-+..|..+...+.
T Consensus 4 l~~lia~~~wGs~g~----~~k~~~-g~~~~~-~~--~~~~g~l~~~~~~~~~~-~~~~~~~~~~~~g~l~G~~w~ig~~ 74 (290)
T TIGR00776 4 LIALIPALFWGSFVL----INVKIG-GGPYSQ-TL--GTTFGALILSIAIAIFV-LPEFWALSIFLVGLLSGAFWALGQI 74 (290)
T ss_pred HHHHHHHHHHhhhHH----HHhccC-CCHHHH-HH--HHHHHHHHHHHHHHHHh-CCcccccHHHHHHHHHHHHHHhhhh
Confidence 456778888888777 445544 333222 22 67777666555433211 1111123333444455566788889
Q ss_pred HhHhhccCccchHHHHHHH-hHHHHHHHHHHHhcCCcCCchh----hhhHHHHhhhhhhhcccccc-------cc-hhHH
Q 020772 92 FALASLKGVNIPMYIAIKR-LTPLAVLVAGFFSGKGKPTTQV----TLSVLLTATGCVIAALGDFS-------FD-LSGY 158 (321)
Q Consensus 92 ~~~~al~~~~~~~~~~l~~-~~pv~~~l~~~l~~ke~~~~~~----~~ai~~~~~Gv~l~~~~~~~-------~~-~~G~ 158 (321)
++..+.++++++.+..+.+ +.|+++++.+.+++|||.++++ +.++++.++|+.+....+.+ .+ ..|+
T Consensus 75 ~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi 154 (290)
T TIGR00776 75 NQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGI 154 (290)
T ss_pred hHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHH
Confidence 9999999999999998888 8889999999999999999999 99999999999997543211 33 6899
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhh----hHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHH
Q 020772 159 SMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSF----LSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILS 234 (321)
Q Consensus 159 ~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 234 (321)
+++++|+++|+.|.+..|+. + .||.+..+.+.. .+.+...+. . +.. +. .+...+..+ ..
T Consensus 155 ~~~l~sg~~y~~~~~~~~~~--~--~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~-------~~-~~~~~~~~~-~~ 217 (290)
T TIGR00776 155 LLLLMSTIGYLVYVVVAKAF--G--VDGLSVLLPQAIGMVIGGIIFNLGH---I-LAK-------PL-KKYAILLNI-LP 217 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHc--C--CCcceehhHHHHHHHHHHHHHHHHH---h-ccc-------ch-HHHHHHHHH-HH
Confidence 99999999999999999975 2 377777544443 333333222 0 000 11 122334344 37
Q ss_pred HHHHHHHHHHHHHHHh-ccchhHHHHHhhhhHHHHHHhhhheeCccccchhhh----HHHHHHHHHHHHHH
Q 020772 235 LVMGIILNFTMFLCTI-VNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNV----TGLLINTAGGVWYS 300 (321)
Q Consensus 235 ~~~~~~~~~~~~~~~~-~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~----iG~~lil~g~~~~~ 300 (321)
|++....+.+.+...+ +.++.+.+++.+.+|+.+.+.+++++|| +.+..|+ +|.++++.|+.+..
T Consensus 218 Gi~~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E-~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 218 GLMWGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGE-KKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhcc-CCCcceeehhHHHHHHHHHHHHHHh
Confidence 7775444455557778 9999999999999999999999999998 9999999 99999999988754
No 25
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.79 E-value=1.1e-20 Score=156.46 Aligned_cols=274 Identities=17% Similarity=0.157 Sum_probs=206.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHcCccccCcCChhhhHHHHHHHHHHHHHHHHhH
Q 020772 15 LFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFAL 94 (321)
Q Consensus 15 ~~~~~~~~~~~~~~~~~nK~~~~~~~~p~~i~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (321)
++..+.|..+ ..+++..|.+. . .|....-.|.++-.++..++........ --+....+++++.|+.......+.+
T Consensus 41 ~l~~vs~ff~-~~~vv~t~~~e--~-~p~e~a~~r~l~~mlit~pcliy~~~~v-~gp~g~R~~LiLRg~mG~tgvmlmy 115 (346)
T KOG4510|consen 41 LLLTVSYFFN-SCMVVSTKVLE--N-DPMELASFRLLVRMLITYPCLIYYMQPV-IGPEGKRKWLILRGFMGFTGVMLMY 115 (346)
T ss_pred eehhhHHHHh-hHHHhhhhhhc--c-ChhHhhhhhhhhehhhhheEEEEEeeee-ecCCCcEEEEEeehhhhhhHHHHHH
Confidence 3444444443 33344444333 2 3777777775555555444322111111 0111222678888999889999999
Q ss_pred hhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhccc-----c---------cccchhHHHH
Q 020772 95 ASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALG-----D---------FSFDLSGYSM 160 (321)
Q Consensus 95 ~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~-----~---------~~~~~~G~~~ 160 (321)
||++|++.+.++++...+|+++.++++.++||++++...++..+.+.|++++..+ | .+.+..|.+.
T Consensus 116 ya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt~a 195 (346)
T KOG4510|consen 116 YALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGTVA 195 (346)
T ss_pred HHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCchHH
Confidence 9999999999999999999999999999999999999999999999999996532 1 1234578888
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHHHHH
Q 020772 161 ALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGII 240 (321)
Q Consensus 161 ~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 240 (321)
++.++++-|.-.++.|++.|+. |....+.|...++.+..++.....++. ..+....-|+.++..|+++++
T Consensus 196 ai~s~lf~asvyIilR~iGk~~--h~~msvsyf~~i~lV~s~I~~~~ig~~--------~lP~cgkdr~l~~~lGvfgfi 265 (346)
T KOG4510|consen 196 AISSVLFGASVYIILRYIGKNA--HAIMSVSYFSLITLVVSLIGCASIGAV--------QLPHCGKDRWLFVNLGVFGFI 265 (346)
T ss_pred HHHhHhhhhhHHHHHHHhhccc--cEEEEehHHHHHHHHHHHHHHhhccce--------ecCccccceEEEEEehhhhhH
Confidence 8888888888788889987765 667777788888888877776655432 122234457778889999999
Q ss_pred HHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHHHH
Q 020772 241 LNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKY 304 (321)
Q Consensus 241 ~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~~~ 304 (321)
.+.....++++--|...++..+.+-+++.+..+++||| .+|++.|+|+++++.+.+....+|.
T Consensus 266 gQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~-~Pt~ws~~Ga~~vvsS~v~~a~~kw 328 (346)
T KOG4510|consen 266 GQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGH-WPTIWSWVGAVMVVSSTVWVALKKW 328 (346)
T ss_pred HHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcC-CChHHHhhceeeeehhHHHHHHHHH
Confidence 99999999999999999999999999999999999997 9999999999998777766655543
No 26
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.79 E-value=1e-17 Score=143.64 Aligned_cols=213 Identities=14% Similarity=0.157 Sum_probs=171.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhccccc-
Q 020772 73 LMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDF- 151 (321)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~~- 151 (321)
+++..++...+++|..++.+.++++++++++.+++++++..+++++++++++|+|++++||.++.+.++|+.+...++.
T Consensus 14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 4555666777899999999999999999999999999999999999999999999999999999999999999533110
Q ss_pred ----------------ccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhh
Q 020772 152 ----------------SFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSL 215 (321)
Q Consensus 152 ----------------~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (321)
.....|+.+++.++++.++..++.+|++|+.+.+.+.........|.++..+..... +..+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~-~~~~~~ 172 (244)
T PF04142_consen 94 SSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLS-DGSAIS 172 (244)
T ss_pred ccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcc-cccccc
Confidence 113689999999999999999999999999887777777777888888887765543 322222
Q ss_pred HhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHH
Q 020772 216 SLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLI 291 (321)
Q Consensus 216 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~l 291 (321)
+..+-..++...|..++..++.|...... +|+.+...-++...+..+.+.++++.+|+. ++|....+|..+
T Consensus 173 ~~g~f~G~~~~~~~~i~~~a~gGllva~v----~KyadnI~K~fa~a~siv~t~~~s~~lf~~-~~s~~f~lg~~~ 243 (244)
T PF04142_consen 173 ESGFFHGYSWWVWIVIFLQAIGGLLVAFV----LKYADNIVKGFATAVSIVLTAVLSVLLFGF-PPSLSFLLGAAL 243 (244)
T ss_pred cCCchhhcchHHHHHHHHHHHhhHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHhCC-CCchHHhhheec
Confidence 21111223445566666666666665544 699999999999999999999999999996 999999999865
No 27
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.79 E-value=1e-18 Score=151.69 Aligned_cols=229 Identities=19% Similarity=0.205 Sum_probs=184.9
Q ss_pred hhHHHHHHHHHHHHHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhccccc---
Q 020772 75 TAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDF--- 151 (321)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~~--- 151 (321)
..+..+.++.+....++++|.|+.+++++..+++.+++-+|+.+++..+..||+++.|.+++.+.+.|++++.-.|.
T Consensus 158 ~ak~sl~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~ 237 (416)
T KOG2765|consen 158 TAKLSLFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN 237 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccc
Confidence 34455566777889999999999999999999999999999999999999999999999999999999999876532
Q ss_pred -----ccchhHHHHHHHHHHHHHHHHHHHHhhcCCC--CCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCc
Q 020772 152 -----SFDLSGYSMALTSVFFQTMYLVLVEKSGAED--GLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNS 224 (321)
Q Consensus 152 -----~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (321)
+....|.++++++++.||.|.++.||...++ +.|-.....+.+++..+++.|..+.. +....- .++.+..
T Consensus 238 ~~~~a~~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL-~~~~~e--~F~lP~~ 314 (416)
T KOG2765|consen 238 SDLPASRPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIIL-DFFGEE--RFELPSS 314 (416)
T ss_pred ccCCccchhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHH-HHhccC--cccCCCC
Confidence 2347899999999999999999999987665 46666666777888888888766543 211111 1233333
Q ss_pred hHHHHHHHHHHHHHHHHH-HHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHHH
Q 020772 225 FSFLVILILSLVMGIILN-FTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAK 303 (321)
Q Consensus 225 ~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~~ 303 (321)
.+ ...+++.++.+.++. +++.++.--++|..++.-..+..+.+.+.+.++=+ +++|+.+++|.+.++.|.+..++..
T Consensus 315 ~q-~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~-~~~S~~~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 315 TQ-FSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKG-KHPSALYIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred ce-eEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcC-CCCCHHHHHHHHHHHHHHhheeccc
Confidence 33 445566777788877 99999999999999999999999999988888877 5999999999999999999888775
Q ss_pred Hhhhh
Q 020772 304 YQQKK 308 (321)
Q Consensus 304 ~~~~~ 308 (321)
+...+
T Consensus 393 ~~~~~ 397 (416)
T KOG2765|consen 393 ENSKK 397 (416)
T ss_pred ccccc
Confidence 54433
No 28
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.79 E-value=2.2e-16 Score=137.42 Aligned_cols=277 Identities=13% Similarity=0.102 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHHHhcc--C-chHHHHHHHHHHHHHHHHHHHHcC-----ccccCcC------ChhhhHHHHHHHHHHHHH
Q 020772 24 SSMAMVFINKAVIMQY--A-HSMTLLTLQQLATALLIQAGRQMG-----YTKSKAI------DLMTAKKLLPVSLFYNAN 89 (321)
Q Consensus 24 ~~~~~~~~nK~~~~~~--~-~p~~i~~~r~~~~~l~l~~~~~~~-----~~~~~~~------~~~~~~~~~~~~~~~~~~ 89 (321)
...+.....|+.-... . .|.+..+.--.+-.+++......+ .+..+.+ .+++..++...+++|..+
T Consensus 26 ~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~vPa~iYalq 105 (345)
T KOG2234|consen 26 QNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSVPALIYALQ 105 (345)
T ss_pred HHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHHHHHHHHHh
Confidence 3445555666665432 2 255555554444444444332221 1111222 233444455557788888
Q ss_pred HHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhccc---c--------cccchhHH
Q 020772 90 VAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALG---D--------FSFDLSGY 158 (321)
Q Consensus 90 ~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~---~--------~~~~~~G~ 158 (321)
+.+++.++.+++++++++...+....++++..+++++|.+++||.++++.+.|+.+...+ . .+..+.|.
T Consensus 106 Nnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~~~~~~n~~~G~ 185 (345)
T KOG2234|consen 106 NNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKSESSAQNPFLGL 185 (345)
T ss_pred hhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccCCCcccchhhhH
Confidence 889999999999999999999999999999999999999999999999999999997621 1 12347899
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHHH
Q 020772 159 SMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMG 238 (321)
Q Consensus 159 ~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 238 (321)
...+.++++.++-.++.+|++|+.+.+.+-.......+|.++.....+.. |........+-..++...|..++..++.|
T Consensus 186 ~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~-d~~~i~~~gff~G~s~~vw~vVl~~a~gG 264 (345)
T KOG2234|consen 186 VAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQ-DGEAINEYGFFYGYSSIVWLVVLLNAVGG 264 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhc-cccccccCCccccccHHHHHHHHHHhccc
Confidence 99999999999999999999998887878777777788888877776655 33332222222334566788888888888
Q ss_pred HHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHHHHhh
Q 020772 239 IILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQQ 306 (321)
Q Consensus 239 ~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~~~~~ 306 (321)
.+.+.. +|+.+...-.....+..+++.+.++.+++. ++|....+|..+++.++.+|+..+.++
T Consensus 265 Llvs~v----~KyADnIlK~f~~s~aiilt~v~S~~Lf~~-~~t~~F~lG~~lVi~Si~lY~~~P~~~ 327 (345)
T KOG2234|consen 265 LLVSLV----MKYADNILKGFSTSVAIILTTVASIALFDF-QLTLYFLLGALLVILSIFLYSLYPARD 327 (345)
T ss_pred hhHHHH----HHHhHHHHHHHHHHHHHHHHHHHHHHHccC-CchHHHHHHHHHHHHHHHHhhcCCccc
Confidence 887755 477777777777778889999999999985 999999999999999999999776655
No 29
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.79 E-value=3.3e-17 Score=136.94 Aligned_cols=224 Identities=19% Similarity=0.166 Sum_probs=178.5
Q ss_pred HHHHHHHHHHHHHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcccc------
Q 020772 77 KKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGD------ 150 (321)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~------ 150 (321)
+..++.+++......+.+.++.+++++.+|+++....+|+.+++..++|++++.+||+++....+|++++...|
T Consensus 87 ~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~ 166 (372)
T KOG3912|consen 87 VLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTD 166 (372)
T ss_pred ceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccC
Confidence 44556789999999999999999999999999999999999999999999999999999999999999865432
Q ss_pred ----cccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhh------------
Q 020772 151 ----FSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGS------------ 214 (321)
Q Consensus 151 ----~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 214 (321)
.+.-..|+.+++++-+.-|...++.+|..++.+.+|.+...|..++|.+.+..........+..
T Consensus 167 p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~e 246 (372)
T KOG3912|consen 167 PYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVLE 246 (372)
T ss_pred CccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcchh
Confidence 1223679999999999999999999999999999999999999999977666555432111110
Q ss_pred -hHhhhhc-cCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHH
Q 020772 215 -LSLLFSK-SNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLIN 292 (321)
Q Consensus 215 -~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~li 292 (321)
+...+.. ...+.....+....+.....|+......|..|+++..+...++.....+++..+..| .+...|+.|..+.
T Consensus 247 D~~~~~~~~~e~p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E-~f~llqilGFliL 325 (372)
T KOG3912|consen 247 DWGDAFAALQESPSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWE-YFHLLQILGFLIL 325 (372)
T ss_pred hHHHHHHHhcCCchhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHH-HHHHHHHHHHHHH
Confidence 0000111 111222222222222233345777788899999999999999999999999999997 9999999999999
Q ss_pred HHHHHHHHH
Q 020772 293 TAGGVWYSY 301 (321)
Q Consensus 293 l~g~~~~~~ 301 (321)
+.|...|+.
T Consensus 326 i~Gi~lY~~ 334 (372)
T KOG3912|consen 326 IMGIILYNQ 334 (372)
T ss_pred HHHHHHHHH
Confidence 999999984
No 30
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.78 E-value=1.7e-18 Score=144.31 Aligned_cols=256 Identities=20% Similarity=0.207 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCccccCcCChhhhHHHHHHHHHHHHHHHHhHhhccC-ccchHHHHHHHhHHHHHHHHHHHh
Q 020772 45 LLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFALASLKG-VNIPMYIAIKRLTPLAVLVAGFFS 123 (321)
Q Consensus 45 i~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~-~~~~~~~~l~~~~pv~~~l~~~l~ 123 (321)
+++.|+++.+.-.++....-...+++++. |.++..-..+...+.+.|+|+++ +|.+...++++.+++.++++++++
T Consensus 36 ITFaqFlFia~eGlif~skf~~~k~kipl---k~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il 112 (330)
T KOG1583|consen 36 ITFAQFLFIATEGLIFTSKFFTVKPKIPL---KDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWIL 112 (330)
T ss_pred hHHHHHHHHHHhceeeeccccccCCCCch---hhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHh
Confidence 89999887766555543211111234444 55555555566778889999988 899999999999999999999999
Q ss_pred cCCcCCchhhhhHHHHhhhhhhhcc---ccccc------------c----hhHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 020772 124 GKGKPTTQVTLSVLLTATGCVIAAL---GDFSF------------D----LSGYSMALTSVFFQTMYLVLVEKSGAEDGL 184 (321)
Q Consensus 124 ~ke~~~~~~~~ai~~~~~Gv~l~~~---~~~~~------------~----~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~ 184 (321)
.|+|.+.+|+.++++..+|+++... .|.+. + ..|+.+..++.+..|.-.+++++..++++-
T Consensus 113 ~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGK 192 (330)
T KOG1583|consen 113 LGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGK 192 (330)
T ss_pred ccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999998533 11100 0 568999999999999999999999998889
Q ss_pred CHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhc-------c--CchHHHHHHHHHHHHHHHHHHHHHHHHhccchh
Q 020772 185 SSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSK-------S--NSFSFLVILILSLVMGIILNFTMFLCTIVNSAL 255 (321)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~ 255 (321)
|+-+.++|+..++.+.++... +|..+.+...+.. . .-+..|..++.+.+.-+.---..+....++++.
T Consensus 193 h~~EalFytH~LsLP~Flf~~---~div~~~~~~~~se~~~~p~~g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sL 269 (330)
T KOG1583|consen 193 HWKEALFYTHFLSLPLFLFMG---DDIVSHWRLAFKSESYLIPLLGFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSL 269 (330)
T ss_pred ChHHHHHHHHHhccchHHHhc---chHHHHHHHHhcCcceeccccCccccHHHHHHHHHHHHHHHHHHhhhhhhceecce
Confidence 999999999988776665432 1222211111111 0 123456666666655554444445566888999
Q ss_pred HHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHHHHhhh
Q 020772 256 TTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQQK 307 (321)
Q Consensus 256 ~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~~~~~~ 307 (321)
+++++-.+++.++.+++.+.|+. ++|+.+|+|..++..|.++|+....+.+
T Consensus 270 TVTlvltlRKFvSLl~SiiyF~N-pft~~h~lGa~lVF~Gt~~fa~~~~~~~ 320 (330)
T KOG1583|consen 270 TVTLVLTLRKFVSLLFSIIYFEN-PFTPWHWLGAALVFFGTLLFANVWNHPK 320 (330)
T ss_pred EEEEeeeHHHHHHHhheeeEecC-CCCHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 99999999999999999999985 9999999999999999999988765544
No 31
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.77 E-value=4.1e-17 Score=135.74 Aligned_cols=257 Identities=18% Similarity=0.189 Sum_probs=214.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHcCccccCcCChhhhHHHHHHHHHHHHHHHHhHhhccCccchHHHHHHHhHHHHHHHHH
Q 020772 41 HSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAG 120 (321)
Q Consensus 41 ~p~~i~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~ 120 (321)
+.+.+++.|+++-..+.++-...-..+++..|| |....++.+..+...+.|-++.|++.+.-.+.+++-.+.+++.+
T Consensus 74 ~GWylTlvQf~~Ysg~glie~~~~~~k~r~iP~---rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmigg 150 (367)
T KOG1582|consen 74 FGWYLTLVQFLVYSGFGLIELQLIQTKRRVIPW---RTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMIGG 150 (367)
T ss_pred cchHHHHHHHHHHHhhhheEEEeecccceecch---hHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhhee
Confidence 557799999887655444422222223334444 77778888888899999999999999999999999999999999
Q ss_pred HHhcCCcCCchhhhhHHHHhhhhhhhccccc----ccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhh
Q 020772 121 FFSGKGKPTTQVTLSVLLTATGCVIAALGDF----SFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFL 196 (321)
Q Consensus 121 ~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~~----~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~ 196 (321)
.++.++|.++.++.+..+..+|.++....|. .+|..|.+++-.+.++.|+-...+++.++..+.+..++.+|...+
T Consensus 151 ifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~i 230 (367)
T KOG1582|consen 151 IFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGI 230 (367)
T ss_pred eeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecc
Confidence 9999999999999999999999999776553 467899999999999999999999999988778889999999999
Q ss_pred HHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhhee
Q 020772 197 SLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVL 276 (321)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~ 276 (321)
|.+.+......+||..+.+..-.++ +.+.....++-+..+++...+....++..+|.+.+.+...++..++++++++|
T Consensus 231 G~vflf~~mvlTge~f~a~~fcaeh--p~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllF 308 (367)
T KOG1582|consen 231 GFVFLFAPMVLTGELFSAWTFCAEH--PVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLF 308 (367)
T ss_pred cHHHHHHHHHhcccchhhhHHHHhC--cHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHH
Confidence 9999999999999987776542222 34456666677777777777777889999999999999999999999999999
Q ss_pred CccccchhhhHHHHHHHHHHHHHHHHH
Q 020772 277 GGVQVRALNVTGLLINTAGGVWYSYAK 303 (321)
Q Consensus 277 ~e~~~t~~~~iG~~lil~g~~~~~~~~ 303 (321)
. +|+|.+..-|..++..|+.+-.+.+
T Consensus 309 s-KPfT~qy~~~gllv~lgI~Ln~ysk 334 (367)
T KOG1582|consen 309 S-KPFTEQYVWSGLLVVLGIYLNMYSK 334 (367)
T ss_pred c-CchHHHHhhhhHHHHHHHHhhcccC
Confidence 8 4999999999999999998765544
No 32
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.73 E-value=1e-16 Score=128.61 Aligned_cols=143 Identities=27% Similarity=0.450 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhc----c-CchH
Q 020772 157 GYSMALTSVFFQTMYLVLVEKSGAE-----DGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSK----S-NSFS 226 (321)
Q Consensus 157 G~~~~l~s~~~~a~~~v~~k~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~ 226 (321)
|.++++.|.++.|+++++.|+..++ .+.++.+++.|+.+.+.+.+.|.++..|+.... +..... . .+..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~-~~~~~~~~~~~~~~~~ 79 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLS-SFFSEIFGEELSSDPN 79 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hHHHHhhhhhhcchHH
Confidence 7889999999999999999998887 589999999999999999999999988664422 211111 1 1457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHH
Q 020772 227 FLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSY 301 (321)
Q Consensus 227 ~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~ 301 (321)
.+..++.+|+.+...|++.+.+++++||.+.++.+.+|.+.+++.|+++||| ++|..+++|+.+.+.|+.+|+|
T Consensus 80 ~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~-~~t~~~~~G~~l~~~G~~~Ysy 153 (153)
T PF03151_consen 80 FIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGE-PITPLQIIGIVLALVGVLLYSY 153 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCC-cCCHHHHHHHHHHHHHHheeeC
Confidence 7888999999999999999999999999999999999999999999999998 9999999999999999999874
No 33
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.50 E-value=2.3e-15 Score=124.38 Aligned_cols=280 Identities=13% Similarity=0.067 Sum_probs=201.8
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHhc-cCchHHHHHHHHHHHHHHHHHHHHcCccccCcCChhhhHHHHHHHHHH
Q 020772 8 EISPFLGLFAALSYGVSSMAMVFINKAVIMQ-YAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFY 86 (321)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~nK~~~~~-~~~p~~i~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (321)
+++.+.++...=.-.++.++....+.++-.. .+-|..=+|.-+..-+++...+...+. +..+ -.|+..+..++..
T Consensus 13 tkk~li~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~-~~~~---~~~~hYilla~~D 88 (336)
T KOG2766|consen 13 TKKTLIGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRR-KYIK---AKWRHYILLAFVD 88 (336)
T ss_pred chhhhheeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhh-HHHH---HHHHHhhheeEEe
Confidence 3444444333333445556666677777653 566777666666666666555544443 2222 2345688888888
Q ss_pred HHHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhccccc--------ccchhHH
Q 020772 87 NANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDF--------SFDLSGY 158 (321)
Q Consensus 87 ~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~~--------~~~~~G~ 158 (321)
.-.+++-..|.||++....+++-+-..+.+.+++|+++|.|..+.++.++++++.|+++..++|. +....|+
T Consensus 89 VEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD 168 (336)
T KOG2766|consen 89 VEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGD 168 (336)
T ss_pred ecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCc
Confidence 88888888899999999999999999999999999999999999999999999999999776542 2236799
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHHH
Q 020772 159 SMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMG 238 (321)
Q Consensus 159 ~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 238 (321)
.++++.+-+||..++..+.+.|+. |..+.+....++|+++..+-.+.. ..+.. ...++......+. ...+-
T Consensus 169 ~lvi~GATlYaVSNv~EEflvkn~--d~~elm~~lgLfGaIIsaIQ~i~~--~~~~~----tl~w~~~i~~yl~-f~L~M 239 (336)
T KOG2766|consen 169 FLVIAGATLYAVSNVSEEFLVKNA--DRVELMGFLGLFGAIISAIQFIFE--RHHVS----TLHWDSAIFLYLR-FALTM 239 (336)
T ss_pred EEEEecceeeeeccccHHHHHhcC--cHHHHHHHHHHHHHHHHHHHHhhh--cccee----eEeehHHHHHHHH-HHHHH
Confidence 999999999999999999998775 889999999999999998874332 22221 2222322221111 22222
Q ss_pred HHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHHH
Q 020772 239 IILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAK 303 (321)
Q Consensus 239 ~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~~ 303 (321)
++..-..-..+|..|++..+.-.......++++ ..||- +++|...+....+..|..+|+.+.
T Consensus 240 FllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgY-hv~wLY~laF~~i~~GliiYs~re 301 (336)
T KOG2766|consen 240 FLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGY-HVDWLYFLAFATIATGLIIYSTRE 301 (336)
T ss_pred HHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhc-chhhhhHHHHHHHHHhhEEeeccc
Confidence 222222235678899988888777788888877 66785 899999999999999999997553
No 34
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=99.36 E-value=7.9e-12 Score=106.52 Aligned_cols=194 Identities=14% Similarity=0.108 Sum_probs=132.9
Q ss_pred ccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhccc--------------------cc-------c
Q 020772 100 VNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALG--------------------DF-------S 152 (321)
Q Consensus 100 ~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~--------------------~~-------~ 152 (321)
++++.....++..|+++++.++...+||++..|+++.++...|+.....+ +. .
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 46778889999999999999999999999999999999999998852111 10 1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHH
Q 020772 153 FDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILI 232 (321)
Q Consensus 153 ~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 232 (321)
..+.|....+.++++.+...+++++..|+++.+.+.........+.+......... +........+-...+...|..++
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 160 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSRNLQLPLFGLFSTFSVLLWS-DGTLISNFGFFIGYPTAVWIVGL 160 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCchHHHHHHHHHHHHHHHHHHHhhc-ccchhhccCcccCCchHHHHHHH
Confidence 23667788888888999999999998776544433333333333333222211111 11111000000111222333332
Q ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHH
Q 020772 233 LSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWY 299 (321)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~ 299 (321)
. ....+.+...++|+.++.+.++...++++.+.++++++||| +++..+++|..+++.|+.+|
T Consensus 161 ~----~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~-~ls~~~~~g~~lV~~~~~lY 222 (222)
T TIGR00803 161 L----NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDA-KISSTFYLGAILVFLATFLY 222 (222)
T ss_pred H----HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHeeeEeC
Confidence 2 33344556677899999999999999999999999999997 99999999999999987654
No 35
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.29 E-value=2.9e-11 Score=89.79 Aligned_cols=131 Identities=10% Similarity=0.087 Sum_probs=109.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHcCccc--cCcCChhhhHHHHHHHHHHHHH
Q 020772 12 FLGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTK--SKAIDLMTAKKLLPVSLFYNAN 89 (321)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~nK~~~~~~~~p~~i~~~r~~~~~l~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 89 (321)
+.+++++.++++..+ +.|..+++.+ |.+-++.|..+....+.......++. ..++++|.+..+..-|+.....
T Consensus 6 ~~ALLsA~fa~L~~i----F~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~gls 80 (140)
T COG2510 6 IYALLSALFAGLTPI----FAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLS 80 (140)
T ss_pred HHHHHHHHHHHHHHH----HHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHH
Confidence 345666667776554 8898887666 88899999999888777665543222 2246788888899999899999
Q ss_pred HHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhc
Q 020772 90 VAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAA 147 (321)
Q Consensus 90 ~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~ 147 (321)
+.+++.|++.-++|...=+..++|+++.+++++++|||++.++|+++++..+|+++.+
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEe
Confidence 9999999999999999999999999999999999999999999999999999998764
No 36
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.29 E-value=2.7e-11 Score=93.26 Aligned_cols=118 Identities=13% Similarity=0.164 Sum_probs=97.7
Q ss_pred HHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHcCcc-ccCcCChhhhHHHHHHHHH-HHHHHHHhHhhccCccchHH
Q 020772 28 MVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYT-KSKAIDLMTAKKLLPVSLF-YNANVAFALASLKGVNIPMY 105 (321)
Q Consensus 28 ~~~~nK~~~~~~~~p~~i~~~r~~~~~l~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~ 105 (321)
....+|...++.+ |....++|+..+.+ +......... +.++.+++++......+++ ......++++++++++++..
T Consensus 6 ~~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 83 (126)
T PF00892_consen 6 YSVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIV 83 (126)
T ss_pred HHHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHH
Confidence 3457888887755 78899999999987 4443333222 2355666777777877877 58999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhc
Q 020772 106 IAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAA 147 (321)
Q Consensus 106 ~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~ 147 (321)
+.+.++.|+++.+++++++||+++++++.++++++.|+.+..
T Consensus 84 ~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 84 SILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998753
No 37
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.28 E-value=1.7e-11 Score=91.05 Aligned_cols=134 Identities=18% Similarity=0.190 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHH
Q 020772 158 YSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVM 237 (321)
Q Consensus 158 ~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 237 (321)
.+++++|++++++..++.|--.++ .||...+.........++......+|..... ..-+++.|..++++|+.
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~~--vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~------~~~~~k~~lflilSGla 76 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLEG--VDPDFATTIRTIVILIFLLIVLLVTGNWQAG------GEIGPKSWLFLILSGLA 76 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc--cCccHHHHHHHHHHHHHHHHHHHhcCceecc------cccCcceehhhhHHHHH
Confidence 578999999999999998877665 4777778888888888888888887665432 22356778899999987
Q ss_pred HHHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHH
Q 020772 238 GIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYS 300 (321)
Q Consensus 238 ~~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~ 300 (321)
+...-+++|++++...+..+..+.-+.+++++++++++++| ++|..+|+|+.++.+|.++.+
T Consensus 77 ~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E-~ls~~~~iG~~LI~~Gailvs 138 (140)
T COG2510 77 GGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGE-RLSLPTWIGIVLIVIGAILVS 138 (140)
T ss_pred HHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcC-CCCHHHHHHHHHHHhCeeeEe
Confidence 77777999999999999999999999999999999999998 999999999999999987643
No 38
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.24 E-value=4.8e-11 Score=90.43 Aligned_cols=105 Identities=16% Similarity=0.141 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHHHHcCccc---cCcCChhhhHHHHHHHHHHH-HHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHH
Q 020772 47 TLQQLATALLIQAGRQMGYTK---SKAIDLMTAKKLLPVSLFYN-ANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFF 122 (321)
Q Consensus 47 ~~r~~~~~l~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l 122 (321)
.+|+.++.+.+......+++. .+..+++++.++...|++.. .+..++++|+++.| +....+.++.|+++++++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 468888877777654432211 12333455566777788765 89999999999999 68889999999999999999
Q ss_pred hcCCcCCchhhhhHHHHhhhhhhhcccccc
Q 020772 123 SGKGKPTTQVTLSVLLTATGCVIAALGDFS 152 (321)
Q Consensus 123 ~~ke~~~~~~~~ai~~~~~Gv~l~~~~~~~ 152 (321)
++|||++++++.+++++++|++++..+|.+
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 999999999999999999999999887754
No 39
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=99.22 E-value=1.5e-11 Score=98.14 Aligned_cols=216 Identities=18% Similarity=0.182 Sum_probs=163.7
Q ss_pred hhHHHHHHHHHHHHHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcccc--cc
Q 020772 75 TAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGD--FS 152 (321)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~--~~ 152 (321)
-+++..|.+++..+.+|.+..|++.++++.++.+..+.-.++.+++++.+|+|+...++++.++.+.|++++++.| ..
T Consensus 52 ~~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a 131 (290)
T KOG4314|consen 52 FFIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHA 131 (290)
T ss_pred eeeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhh
Confidence 3456778889999999999999999999999999999999999999999999999999999999999999998754 34
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHH------Hh-CCchhhhHhhhhccCch
Q 020772 153 FDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLII------VT-GEFPGSLSLLFSKSNSF 225 (321)
Q Consensus 153 ~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~~~~~ 225 (321)
.++.|+.+++.|++..|.|.+..|+...+.++. +...+....|..-+...++ ++ -|+++. +. .
T Consensus 132 ~e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~G--daa~FmS~LGF~NL~~~~~~~lIL~~T~VE~~qs----FA----~ 201 (290)
T KOG4314|consen 132 DEIIGIACAVGSAFMAALYKVLFKMFIGNANFG--DAAHFMSCLGFFNLCFISFPALILAFTGVEHLQS----FA----A 201 (290)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhccCcch--hHHHHHHHHHHHHHHHHhhhHHHHHHhchHHHHH----Hh----h
Confidence 679999999999999999999999987665332 3333444444443333221 11 111111 11 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHH
Q 020772 226 SFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSY 301 (321)
Q Consensus 226 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~ 301 (321)
.-|..++..+......|+.....+..+.|...|+=..........++.+ ++|...+.....|..++.+|..+...
T Consensus 202 ~PWG~l~G~A~L~lAFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL-~q~l~~ntl~La~T~iI~i~FiLiii 276 (290)
T KOG4314|consen 202 APWGCLCGAAGLSLAFNFLINFGIALLNPILISIGMLCGIPGNAAIDIL-FQELEFNTLFLAATCIICIGFILIII 276 (290)
T ss_pred CCchhhhhHHHHHHHHhhheeehhhhhchhhheehheecCcchhHHHHH-HHHHHHHHHHHHHHHHHHHhHHheec
Confidence 1266777777777777777777888888888887555555556666665 45667899999999999999876544
No 40
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.16 E-value=2.2e-10 Score=88.18 Aligned_cols=124 Identities=23% Similarity=0.319 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHHH-HHHHHH
Q 020772 166 FFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMG-IILNFT 244 (321)
Q Consensus 166 ~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~ 244 (321)
++||.+.++.|+..++ .|+.+...+....+.+ +.+.....+... ....+.+.+......+.++ .....+
T Consensus 1 ~~~a~~~~~~k~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK--ISPLSITFWRFLIAGI-LLILLLILGRKP-------FKNLSPRQWLWLLFLGLLGTALAYLL 70 (126)
T ss_pred ceeeeHHHHHHHHhcc--CCHHHHHHHHHHHHHH-HHHHHHhhcccc-------ccCCChhhhhhhhHhhccceehHHHH
Confidence 4688999999998877 5999999999999988 666665543322 0112333455555666664 555577
Q ss_pred HHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHH
Q 020772 245 MFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYS 300 (321)
Q Consensus 245 ~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~ 300 (321)
.+.+.++.++...+.+.+++|+.+.++++++++| +++..+++|+++++.|+.+.+
T Consensus 71 ~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e-~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 71 YFYALKYISASIVSILQYLSPVFAAILGWLFLGE-RPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999998 999999999999999988754
No 41
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.12 E-value=2.7e-08 Score=85.39 Aligned_cols=209 Identities=16% Similarity=0.113 Sum_probs=154.8
Q ss_pred hhhHHHHHHHHHHHHHHHHhHhhccCccchHHH-HHHHhHHHHHHHHHHHhcCCcCCchhh----hhHHHHhhhhhhhcc
Q 020772 74 MTAKKLLPVSLFYNANVAFALASLKGVNIPMYI-AIKRLTPLAVLVAGFFSGKGKPTTQVT----LSVLLTATGCVIAAL 148 (321)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-~l~~~~pv~~~l~~~l~~ke~~~~~~~----~ai~~~~~Gv~l~~~ 148 (321)
+.+..-+..|++.+..+..++.+.++..+|.+- +-.....+.+.+.+.++++|.-+..++ .|+++.++|+.+.+.
T Consensus 43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~ 122 (269)
T PF06800_consen 43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSY 122 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcc
Confidence 566777788899999999999999998877665 455778888999999999999998776 488899999999765
Q ss_pred cccc--------cchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhh
Q 020772 149 GDFS--------FDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFS 220 (321)
Q Consensus 149 ~~~~--------~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (321)
.|.+ ....|+...+++.+.|..|.+..|-. +.|+++..+=+. ++.+..........+ +.
T Consensus 123 ~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~----~~~~~~~~lPqa-iGm~i~a~i~~~~~~--~~------ 189 (269)
T PF06800_consen 123 QDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF----HVSGWSAFLPQA-IGMLIGAFIFNLFSK--KP------ 189 (269)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc----CCChhHhHHHHH-HHHHHHHHHHhhccc--cc------
Confidence 4321 12569999999999999999997653 347777766443 343333332222111 11
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccch----hhhHHHHHHHHHH
Q 020772 221 KSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRA----LNVTGLLINTAGG 296 (321)
Q Consensus 221 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~----~~~iG~~lil~g~ 296 (321)
..+...| .=+..|+.-...|.+++...++.+..+.-.++.+..+++.+.|.+++|| +=+. ..++|.++++.|.
T Consensus 190 -~~~k~~~-~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E-~Kt~ke~~~~~~G~~Liv~G~ 266 (269)
T PF06800_consen 190 -FFEKKSW-KNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKE-KKTKKEMIYTLIGLILIVIGA 266 (269)
T ss_pred -ccccchH-HhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEe-cCchhhHHHHHHHHHHHHHhh
Confidence 1112223 2346777777888888888999999999999999999999999999998 5454 4567888888876
Q ss_pred HH
Q 020772 297 VW 298 (321)
Q Consensus 297 ~~ 298 (321)
.+
T Consensus 267 il 268 (269)
T PF06800_consen 267 IL 268 (269)
T ss_pred hc
Confidence 53
No 42
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.00 E-value=2.5e-08 Score=88.81 Aligned_cols=141 Identities=14% Similarity=0.134 Sum_probs=108.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHH
Q 020772 152 SFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVIL 231 (321)
Q Consensus 152 ~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 231 (321)
+....|+.+++.++++|+...+..|.. . +.+|.++.++...++.+.+.+.....++..+. + ....+...+...
T Consensus 4 ~~~~~g~~~~l~a~~~wg~~~~~~k~~-~--~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~-~---~~~~~~~~~~~~ 76 (296)
T PRK15430 4 KQTRQGVLLALAAYFIWGIAPAYFKLI-Y--YVPADEILTHRVIWSFFFMVVLMSICRQWSYL-K---TLIQTPQKIFML 76 (296)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHH-H---HHHcCHHHHHHH
Confidence 344579999999999999999999764 3 36999999999999988887766544332111 1 101122333333
Q ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHH
Q 020772 232 ILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYS 300 (321)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~ 300 (321)
+..++.....+.+.++++++.++...+++.+..|+++.++++++++| +++..+++|+++.+.|+.+..
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E-~~~~~~~~g~~l~~~Gv~li~ 144 (296)
T PRK15430 77 AVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGE-RFRRMQWLAVILAICGVLVQL 144 (296)
T ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 34444444456778899999999999999999999999999999998 999999999999999988754
No 43
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.96 E-value=4.4e-08 Score=85.35 Aligned_cols=139 Identities=14% Similarity=0.202 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHH
Q 020772 156 SGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSL 235 (321)
Q Consensus 156 ~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 235 (321)
.|..++++++++|+...+..|.. .+ .+|.++.++...++.+.+.+.....++..+..+. .+.....+.+..+...+
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~~--~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g 77 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-KP--LPATDILGHRMIWSFPFMLLSVTLFRQWAALIER-LKRIQKRPLILSLLLCG 77 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-cc--CCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHH-HhCcccchHHHHHHHHH
Confidence 48899999999999999999974 33 6999999999999988887766554332111000 11111122344566667
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHH
Q 020772 236 VMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWY 299 (321)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~ 299 (321)
++......+.+.+.+++++...+++.+..|+++.++++++++| +++..+++|..+.++|+.+.
T Consensus 78 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~E-k~~~~~~l~~~~~~~Gv~li 140 (256)
T TIGR00688 78 LLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKE-RISRFQFIAVIIATLGVISN 140 (256)
T ss_pred HHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHH
Confidence 6666666778899999999999999999999999999999998 99999999999999998765
No 44
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.93 E-value=7.1e-08 Score=84.10 Aligned_cols=130 Identities=15% Similarity=0.071 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCch-HHHHHHHHHHHHHHHHHHHHcCccccCcCChhhhHHHHHHHHH-HHHHHH
Q 020772 14 GLFAALSYGVSSMAMVFINKAVIMQYAHS-MTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLF-YNANVA 91 (321)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~nK~~~~~~~~p-~~i~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 91 (321)
+...++.-..+........|....+.+.+ .....+|+.++.+++.+.......+ +..+++++......+++ ......
T Consensus 129 G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 207 (260)
T TIGR00950 129 GLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPN-PQALSLQWGALLYLGLIGTALAYF 207 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCC-CCcchHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444455788887665532 3455578888888777665543322 23345555556666766 468888
Q ss_pred HhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhh
Q 020772 92 FALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCV 144 (321)
Q Consensus 92 ~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~ 144 (321)
++++++++.+++.++.+.++.|+++.+++++++||++++.++.+..+.+.|+.
T Consensus 208 ~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 208 LWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999863
No 45
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.88 E-value=6.3e-08 Score=85.53 Aligned_cols=132 Identities=12% Similarity=0.112 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHH
Q 020772 158 YSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVM 237 (321)
Q Consensus 158 ~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 237 (321)
+.+.+.+++++|...+..||..+++ ++. ..+....+.+.+.|.........+. + ..+...+..++..++.
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~--~~~--~~~~~~~~~~~l~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~ 72 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKE--PDF--LWWALLAHSVLLTPYGLWYLAQVGW-----S-RLPATFWLLLAISAVA 72 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCch--hHH--HHHHHHHHHHHHHHHHHHhcccCCC-----C-CcchhhHHHHHHHHHH
Confidence 4678999999999999999877653 443 4555666777777766542111110 1 1122345556666766
Q ss_pred HHHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHH
Q 020772 238 GIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYS 300 (321)
Q Consensus 238 ~~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~ 300 (321)
......+.+.+.++.++...+.+.+..|+++.+++++++|| +++..+++|..+++.|+.+..
T Consensus 73 ~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e-~~~~~~~~g~~~~~~Gv~ll~ 134 (281)
T TIGR03340 73 NMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGE-TLSPLAWLGILIITLGLLVLG 134 (281)
T ss_pred HHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHh
Confidence 77777888899999999999999999999999999999998 999999999999999988764
No 46
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.68 E-value=5.8e-07 Score=81.73 Aligned_cols=138 Identities=13% Similarity=0.118 Sum_probs=110.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHH
Q 020772 156 SGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSL 235 (321)
Q Consensus 156 ~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 235 (321)
.-...++..-++|+.+.++.|...++ ++++....++...++.+++.|+....+..... + ..+++.+..+...|
T Consensus 13 ~~~~~~~~~q~~~~~~~~~~k~a~~~-G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~-----~-~~~~~~~~~l~l~g 85 (358)
T PLN00411 13 VFLTAMLATETSVVGISTLFKVATSK-GLNIYPFLGYSYLLASLLLLPSLFFTNRSRSL-----P-PLSVSILSKIGLLG 85 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHC-CCCccHHHHHHHHHHHHHHHHHHHHHHHhccc-----C-cchHHHHHHHHHHH
Confidence 34567778889999999999998855 68999999999999999999887654211100 1 11234456666677
Q ss_pred HHHHHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhhe------eCccccchhhhHHHHHHHHHHHHHHH
Q 020772 236 VMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVV------LGGVQVRALNVTGLLINTAGGVWYSY 301 (321)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~------~~e~~~t~~~~iG~~lil~g~~~~~~ 301 (321)
+++...+.+.+.+.++++|...+++.++.|+++.++++++ ++| +.+..+++|.++.+.|+.+...
T Consensus 86 ~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~e-r~~~~~~~G~~l~~~Gv~ll~~ 156 (358)
T PLN00411 86 FLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKE-RSSVAKVMGTILSLIGALVVIF 156 (358)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcc-cccHHHHHHHHHHHHHHHHHHH
Confidence 7775555677789999999999999999999999999999 687 9999999999999999987654
No 47
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.62 E-value=1.5e-07 Score=83.26 Aligned_cols=219 Identities=16% Similarity=0.130 Sum_probs=121.5
Q ss_pred HHHHHHH-HHHHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhccc---c-ccc
Q 020772 79 LLPVSLF-YNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALG---D-FSF 153 (321)
Q Consensus 79 ~~~~~~~-~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~---~-~~~ 153 (321)
.+..|+. +..+..+...|+.+.|++..+=+.+...++.++++..++|||++++++.|..+++.|..+.... + ...
T Consensus 52 ~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~ 131 (300)
T PF05653_consen 52 LWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIH 131 (300)
T ss_pred HHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcC
Confidence 3444444 6677788899999999999999999999999999999999999999999999999999875421 1 111
Q ss_pred ch---------hHH-HHH-HHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhh---
Q 020772 154 DL---------SGY-SMA-LTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLF--- 219 (321)
Q Consensus 154 ~~---------~G~-~~~-l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 219 (321)
+. .+. .+. +...++..+.....+|.. + .++..|....+..-. ...+.........+..+
T Consensus 132 t~~~l~~~~~~~~fl~y~~~~~~~~~~L~~~~~~r~g-~-----~~i~vyi~i~sl~Gs-~tvl~~K~i~~~i~~~~~g~ 204 (300)
T PF05653_consen 132 TLDELIALLSQPGFLVYFILVLVLILILIFFIKPRYG-R-----RNILVYISICSLIGS-FTVLSAKAISILIKLTFSGD 204 (300)
T ss_pred CHHHHHHHhcCcceehhHHHHHHHHHHHHHhhcchhc-c-----cceEEEEEEeccccc-hhhhHHHHHHHHHHHHhcCc
Confidence 10 111 111 111111111111112211 1 111222222221110 00000000000000000
Q ss_pred hccCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhhh-hHHHHHHhhhheeCcc-ccch----hhhHHHHHHH
Q 020772 220 SKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVL-KGVGSTTLGFVVLGGV-QVRA----LNVTGLLINT 293 (321)
Q Consensus 220 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~-~~v~~~~~~~~~~~e~-~~t~----~~~iG~~lil 293 (321)
+....+..|..++....+....-+..+++.++.+++.+..+.+. -...+++-|.++|+|. ..+. ....|..+++
T Consensus 205 ~~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii 284 (300)
T PF05653_consen 205 NQFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIII 284 (300)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHH
Confidence 11123444555544444433333667789999888665544443 5667777888888872 3454 4456777788
Q ss_pred HHHHHHHHHHH
Q 020772 294 AGGVWYSYAKY 304 (321)
Q Consensus 294 ~g~~~~~~~~~ 304 (321)
.|+.+.+..|+
T Consensus 285 ~GV~lL~~~~~ 295 (300)
T PF05653_consen 285 IGVFLLSSSKD 295 (300)
T ss_pred HhhheeeccCc
Confidence 88877655543
No 48
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.59 E-value=3.6e-06 Score=74.80 Aligned_cols=125 Identities=11% Similarity=0.065 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHcCccccCcCChhhhHHHHHHHHH-HHHHHHHhHhhccC
Q 020772 21 YGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLF-YNANVAFALASLKG 99 (321)
Q Consensus 21 ~~~~~~~~~~~nK~~~~~~~~p~~i~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~ 99 (321)
-+.+.....+..|....+.+ |... .+...++.+.+.+....... ....++..+...+..+++ ......++++++++
T Consensus 156 aa~~~a~~~v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~ 232 (293)
T PRK10532 156 AGACWAIYILSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQAG-EALWHWSILPLGLAVAILSTALPYSLEMIALTR 232 (293)
T ss_pred HHHHHHHHHHHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHccC-cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444556777665444 4444 34555555555554443221 122334444444556666 45778899999999
Q ss_pred ccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcc
Q 020772 100 VNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 148 (321)
Q Consensus 100 ~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~ 148 (321)
.+++.++.+.++.|++..++++++++|+++..++++..+++.|++....
T Consensus 233 ~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~ 281 (293)
T PRK10532 233 LPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTL 281 (293)
T ss_pred cChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998743
No 49
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.54 E-value=2.5e-06 Score=64.10 Aligned_cols=65 Identities=15% Similarity=0.058 Sum_probs=60.4
Q ss_pred HHHHHHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcc
Q 020772 84 LFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 148 (321)
Q Consensus 84 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~ 148 (321)
.++....++...++++.|.+.+..+.++.++++++.+++++|||++++|++++.+.++|++++..
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34778899999999999999999999999999999999999999999999999999999988653
No 50
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.53 E-value=0.00017 Score=64.67 Aligned_cols=228 Identities=12% Similarity=0.004 Sum_probs=141.5
Q ss_pred CChhhhHHHHHHHHHHHHHHHHhHhhccCccchHHH-HHHHhHHHHHHHHHHHhcCCcC---Cc----hhhhhHHHHhhh
Q 020772 71 IDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYI-AIKRLTPLAVLVAGFFSGKGKP---TT----QVTLSVLLTATG 142 (321)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-~l~~~~pv~~~l~~~l~~ke~~---~~----~~~~ai~~~~~G 142 (321)
.+.+.+..-+..|++....+..+..+++++.+|... +...++.+..+++..++++|-. +. .-..++++.++|
T Consensus 68 ~~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliG 147 (345)
T PRK13499 68 FSGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIG 147 (345)
T ss_pred cCHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHH
Confidence 455666777778889999999999999999988876 5667788999999999998754 32 345788888999
Q ss_pred hhhhcc----ccc--------c-cchhHHHHHHHHHHHHHHHH-------HHHHhhcCCCCCCHHHHHHHHhh---hHHH
Q 020772 143 CVIAAL----GDF--------S-FDLSGYSMALTSVFFQTMYL-------VLVEKSGAEDGLSSVEIMFYNSF---LSLP 199 (321)
Q Consensus 143 v~l~~~----~~~--------~-~~~~G~~~~l~s~~~~a~~~-------v~~k~~~~~~~~~~~~~~~~~~~---~~~~ 199 (321)
+.+... .|. + ....|+++.++|.+.++.|. ...+.. .+.+.++.....-+.. .+..
T Consensus 148 i~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a-~~~g~~~~~~~lp~~~~~~~G~~ 226 (345)
T PRK13499 148 VAIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAA-AALGVDPLYAALPSYVVIMGGGA 226 (345)
T ss_pred HHHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhh-hhcCCCchHHHHHHHHHHHHHHH
Confidence 998654 221 1 12579999999999999999 333321 1123444443333332 3333
Q ss_pred HHHHHHHH----hCCchhhhHhhhhcc--CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhHH----HHHhhhhHHHHH
Q 020772 200 FLVFLIIV----TGEFPGSLSLLFSKS--NSFSFLVILILSLVMGIILNFTMFLCTIVNSALTT----TIVGVLKGVGST 269 (321)
Q Consensus 200 ~~~~~~~~----~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~----s~~~~~~~v~~~ 269 (321)
..-...-. ..+..+...+ +... ...+.....++.|+.-...+.++.....+.+.... .+.+.+.-+++.
T Consensus 227 ~~n~~~~~~~~~k~~~~~~~~~-~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~Viist 305 (345)
T PRK13499 227 ITNLGFCFIRLAKNKDLSLKAD-FSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGN 305 (345)
T ss_pred HHHHHHHHHHHhhCCCcccchh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHH
Confidence 22221111 1111110000 0000 00233444456666666666666665555533322 244477778889
Q ss_pred HhhhheeCccccc------hhhhHHHHHHHHHHHHHHHH
Q 020772 270 TLGFVVLGGVQVR------ALNVTGLLINTAGGVWYSYA 302 (321)
Q Consensus 270 ~~~~~~~~e~~~t------~~~~iG~~lil~g~~~~~~~ 302 (321)
+.|.+ +|| .=+ ...++|.++++.|..+....
T Consensus 306 lwGi~-lkE-~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 306 LWGLV-LKE-WKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred Hhhhh-hhh-ccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 88985 898 444 66789999999998876543
No 51
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.53 E-value=3.7e-06 Score=74.68 Aligned_cols=120 Identities=13% Similarity=0.098 Sum_probs=90.0
Q ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHcCcccc-CcCChhhhHHHHHHHHH-HHHHHHHhHhhccCccchHHH
Q 020772 29 VFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKS-KAIDLMTAKKLLPVSLF-YNANVAFALASLKGVNIPMYI 106 (321)
Q Consensus 29 ~~~nK~~~~~~~~p~~i~~~r~~~~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~al~~~~~~~~~ 106 (321)
.+.+|.... +.+...+.+++.++...+.+......... ...+.+.+..+...+++ ......++++++++.+++..+
T Consensus 166 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s 243 (292)
T PRK11272 166 SVWSSRLPL--PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALAT 243 (292)
T ss_pred HHHHHhcCC--CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHH
Confidence 345665432 22455677888888777666543322111 11234555666666766 457888999999999999999
Q ss_pred HHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcccc
Q 020772 107 AIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGD 150 (321)
Q Consensus 107 ~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~ 150 (321)
++..+.|++.+++++++++|++++.++.|.++++.|+.+....+
T Consensus 244 ~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~ 287 (292)
T PRK11272 244 SYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGK 287 (292)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999875543
No 52
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.47 E-value=5.3e-06 Score=73.83 Aligned_cols=79 Identities=14% Similarity=0.060 Sum_probs=68.6
Q ss_pred cCChhhhHHHHHHHHHHHHHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcc
Q 020772 70 AIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 148 (321)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~ 148 (321)
..+.+.+..++..++.......++++++++.+++..+...+..|++..++++++++|+++..++.+.++++.|+.+...
T Consensus 209 ~~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 209 VFSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 3445555566666665667899999999999999999999999999999999999999999999999999999987644
No 53
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.44 E-value=1.3e-05 Score=71.41 Aligned_cols=138 Identities=17% Similarity=0.143 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCch--HHHHHHHHHHHHHHHHHHHH-cCccc-----cCcCChhhhHHHHHHHH
Q 020772 13 LGLFAALSYGVSSMAMVFINKAVIMQYAHS--MTLLTLQQLATALLIQAGRQ-MGYTK-----SKAIDLMTAKKLLPVSL 84 (321)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~nK~~~~~~~~p--~~i~~~r~~~~~l~l~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~ 84 (321)
.+...++.-+++.....+..|....+.+.| .....+....+.+....... .+... ....+.+.+..++..++
T Consensus 143 ~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i 222 (299)
T PRK11453 143 LGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAF 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHH
Confidence 343344444444444555777665444333 23455555555443332221 11111 11334555566666666
Q ss_pred H-HHHHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcccc
Q 020772 85 F-YNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGD 150 (321)
Q Consensus 85 ~-~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~ 150 (321)
+ ......+++.++++.+++.++.+..+.|++..++++++++|+++..++++.+++++|+.+...+.
T Consensus 223 ~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~ 289 (299)
T PRK11453 223 VATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGL 289 (299)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcch
Confidence 5 45788899999999999999999999999999999999999999999999999999999875443
No 54
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.34 E-value=2.4e-05 Score=71.27 Aligned_cols=136 Identities=14% Similarity=0.056 Sum_probs=103.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCC-HHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccC-chHHHHHHH
Q 020772 155 LSGYSMALTSVFFQTMYLVLVEKSGAEDGLS-SVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSN-SFSFLVILI 232 (321)
Q Consensus 155 ~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~ 232 (321)
+.-..+.+..-.+...++...|...++. + |..+..++...+.+.+.+.+.. +.. +. +... ....+..++
T Consensus 48 ~~~~~~~~~wy~~s~~~~~~nK~vl~~~--~~P~~l~~~~~~~~~l~~~~~~~~-~~~-~~-----~~~~~~~~~~~~ll 118 (350)
T PTZ00343 48 WKLALLFLTWYALNVLYVVDNKLALNML--PLPWTISSLQLFVGWLFALLYWAT-GFR-KI-----PRIKSLKLFLKNFL 118 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC--ChhHHHHHHHHHHHHHHHHHHHHh-CCC-CC-----CCCCCHHHHHHHHH
Confidence 3344455555566667788888888764 6 9999999999998776655432 111 10 1010 123566777
Q ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHH
Q 020772 233 LSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYS 300 (321)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~ 300 (321)
..|++........+.+++++++...+++..++|+++++++.++++| +++..++.|.++++.|+.+..
T Consensus 119 p~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~e-k~s~~~~l~l~l~v~Gv~l~~ 185 (350)
T PTZ00343 119 PQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQ-FLNLYAYLSLIPIVGGVALAS 185 (350)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCC-CccHHHHHHHHHHHHHHHhee
Confidence 8888887776666788999999999999999999999999999998 999999999999999988754
No 55
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.32 E-value=1.7e-05 Score=59.88 Aligned_cols=105 Identities=14% Similarity=0.267 Sum_probs=73.2
Q ss_pred HhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHHHH-HHHHHHHHHHhccchhHHHHHhhhhHHHHHHh
Q 020772 193 NSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGI-ILNFTMFLCTIVNSALTTTIVGVLKGVGSTTL 271 (321)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~ 271 (321)
....+.+.+.+.....+...+..+.... .+ +..++..|.++. ......+.+.++.++ .++.+..+.|+++.++
T Consensus 4 r~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~g~~~~~~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll 77 (113)
T PF13536_consen 4 RYLFSVLFLLIILLIRGRLRDLFRALRR----KP-WLWLILAGLLGFGVAYLLFFYALSYAPA-LVAAIFSLSPIFTALL 77 (113)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHh----Cc-HHHHHHHHHHHHHHHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHH
Confidence 3445556666655555444333221111 11 233445555555 344556688899885 7789999999999999
Q ss_pred hhheeCccccchhhhHHHHHHHHHHHHHHHHHH
Q 020772 272 GFVVLGGVQVRALNVTGLLINTAGGVWYSYAKY 304 (321)
Q Consensus 272 ~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~~~ 304 (321)
++++++| +++..+++|.+++.+|+.+..+...
T Consensus 78 ~~~~~~e-r~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 78 SWLFFKE-RLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 9999998 9999999999999999998876643
No 56
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.32 E-value=8e-06 Score=62.92 Aligned_cols=119 Identities=12% Similarity=-0.022 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHH
Q 020772 156 SGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSL 235 (321)
Q Consensus 156 ~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 235 (321)
.|.++++.+.++.+...++.|+-.++.+..+... . . . ...... . ++ ...++.|
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~--~-~----~-~~~~~~-~---------------~p---~~~i~lg 54 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAW--D-F----I-AALLAF-G---------------LA---LRAVLLG 54 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchh--H-H----H-HHHHHH-h---------------cc---HHHHHHH
Confidence 4788999999999999999998765532111100 0 0 0 000000 0 11 1134556
Q ss_pred HHHHHHH-HHHHHHHhccchhHHHHHhhhhHHHHHHhhhh--eeCccccchhhhHHHHHHHHHHHHHHHH
Q 020772 236 VMGIILN-FTMFLCTIVNSALTTTIVGVLKGVGSTTLGFV--VLGGVQVRALNVTGLLINTAGGVWYSYA 302 (321)
Q Consensus 236 ~~~~~~~-~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~--~~~e~~~t~~~~iG~~lil~g~~~~~~~ 302 (321)
+.++..+ +++..++++.+...+..+....++...+.++. ++|| ++|+.+++|+.+++.|+.+.++.
T Consensus 55 l~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E-~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 55 LAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNE-TFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHhccC
Confidence 6666666 55668899999999888888888777777774 7998 99999999999999999997653
No 57
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.25 E-value=4.6e-05 Score=65.51 Aligned_cols=139 Identities=17% Similarity=0.240 Sum_probs=109.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHH
Q 020772 154 DLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILIL 233 (321)
Q Consensus 154 ~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 233 (321)
+..|+++.+.+-+.|+.--.+.|-+.+ .++.++..+....+.+++...........+.. +...+++.+..+..
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll~~---~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~----~~~~~p~~~~~~~l 77 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLLEP---LPATEILAHRVIWSFPFMLALLFLLRQWRELK----QLLKQPKTLLMLAL 77 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHhCcHHHHHHHH
Confidence 347999999999999999989877633 48999999999999999998887775544432 22334554555544
Q ss_pred HHHHHHHHHHHHH-HHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHH
Q 020772 234 SLVMGIILNFTMF-LCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSY 301 (321)
Q Consensus 234 ~~~~~~~~~~~~~-~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~ 301 (321)
++.. ...|...| ++..+......|.=-+++|++.+++|.++++| +++..|++..++..+|+..-.+
T Consensus 78 ~a~l-i~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkE-rls~~Q~iAV~lA~~GV~~~~~ 144 (293)
T COG2962 78 TALL-IGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKE-RLSRLQWIAVGLAAAGVLIQTW 144 (293)
T ss_pred HHHH-HHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHHHHH
Confidence 4433 34454444 78899999999999999999999999999998 9999999999999999877543
No 58
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.25 E-value=4.3e-05 Score=68.19 Aligned_cols=127 Identities=13% Similarity=-0.010 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHHHHHHH
Q 020772 163 TSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILN 242 (321)
Q Consensus 163 ~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 242 (321)
..-.+...++++.|...++. ..|.....++...+.+.+.+... .+.. + ....+.+.+..++..|++.....
T Consensus 9 ~w~~~~~~~~~~NK~~l~~~-~~P~~~~~~~~~~~~~~~~~~~~-~~~~-~------~~~~~~~~~~~~~~~g~~~~~~~ 79 (302)
T TIGR00817 9 LWYFLNVYFNIYNKKLLNVF-PYPYFKTLISLAVGSLYCLLSWS-SGLP-K------RLKISSALLKLLLPVAIVHTIGH 79 (302)
T ss_pred HHHHHHHHHHHHHHHHHhhC-ChhHHHHHHHHHHHHHHHHHHHH-hCCC-C------CCCCCHHHHHHHHHHHHHHHHHH
Confidence 33444555666778887763 36888888888887776655421 1111 1 01112344666777777776666
Q ss_pred HHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHH
Q 020772 243 FTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWY 299 (321)
Q Consensus 243 ~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~ 299 (321)
.+.+.+.+++++...+++..+.|+++.++++++++| +++..++.|.++++.|+.+.
T Consensus 80 ~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e-~~~~~~~~~l~l~~~Gv~l~ 135 (302)
T TIGR00817 80 VTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQ-EFPSTLWLSLLPIVGGVALA 135 (302)
T ss_pred HHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCC-CCcHHHHHHHHHHHHHHhhh
Confidence 778899999999999999999999999999999997 99999999999999998764
No 59
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.09 E-value=9.8e-05 Score=65.49 Aligned_cols=126 Identities=15% Similarity=0.191 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHH----HHHHHHHHHHHcCccccCcCChhhhHHHHHHHHHHHHH
Q 020772 14 GLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQL----ATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNAN 89 (321)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~nK~~~~~~~~p~~i~~~r~~----~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (321)
++...+.-+.+.......+|.. +++ |...++.|.. .+.++.... . +.++.+.+........|++....
T Consensus 153 Gi~~~l~sg~~y~~~~~~~~~~--~~~-~~~~~~~~~~g~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~Gi~~~ia 224 (290)
T TIGR00776 153 GILLLLMSTIGYLVYVVVAKAF--GVD-GLSVLLPQAIGMVIGGIIFNLGH-I----LAKPLKKYAILLNILPGLMWGIG 224 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc--CCC-cceehhHHHHHHHHHHHHHHHHH-h----cccchHHHHHHHHHHHHHHHHHH
Confidence 4333333344444455577754 233 5556444444 333333322 1 11222333334455578888888
Q ss_pred HHHhHhhcc-CccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhh----hhHHHHhhhhhhhc
Q 020772 90 VAFALASLK-GVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVT----LSVLLTATGCVIAA 147 (321)
Q Consensus 90 ~~~~~~al~-~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~----~ai~~~~~Gv~l~~ 147 (321)
..++..+.+ +.+++.+..+.+..|+..++.+.+++||+.+++++ ++.++.+.|+.+..
T Consensus 225 ~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 225 NFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 889999999 99999999999999999999999999999999999 99999999988764
No 60
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.08 E-value=0.00019 Score=57.16 Aligned_cols=123 Identities=11% Similarity=0.057 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHhc-----cC-chHHHHHHHHHHHHHHHHHHHHc-CccccC---------cC--ChhhhHHHHHHHHHH
Q 020772 25 SMAMVFINKAVIMQ-----YA-HSMTLLTLQQLATALLIQAGRQM-GYTKSK---------AI--DLMTAKKLLPVSLFY 86 (321)
Q Consensus 25 ~~~~~~~nK~~~~~-----~~-~p~~i~~~r~~~~~l~l~~~~~~-~~~~~~---------~~--~~~~~~~~~~~~~~~ 86 (321)
...-.+..|..+++ .. .|..+..+-...+.+.+.+.... +..+.. +. +.+.+..++..|++.
T Consensus 12 ~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (153)
T PF03151_consen 12 SALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNFIFLLILSGLLA 91 (153)
T ss_pred HHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHHHHHHHHHHHHH
Confidence 33444466777655 23 36667777777777776665432 221100 00 223344555567777
Q ss_pred HHHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhc
Q 020772 87 NANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAA 147 (321)
Q Consensus 87 ~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~ 147 (321)
...++..+..++++++-.++++.....+.+.+++.++++|+++..++.|+.+.+.|+.+..
T Consensus 92 ~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 92 FLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 7889999999999999999999999999999999999999999999999999999988643
No 61
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=97.98 E-value=1.6e-06 Score=72.17 Aligned_cols=262 Identities=16% Similarity=0.154 Sum_probs=168.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHcCccccCcCChhhhHHHHHHHHHHHHHHH
Q 020772 12 FLGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVA 91 (321)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~nK~~~~~~~~p~~i~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (321)
+.+++-++.|+..-. +.||.-- -|.. -...+.+++++..+..+.- ..+..+.+.+..-+.-|.+..+.+.
T Consensus 5 liaL~P~l~WGsip~---v~~k~GG----~p~q-Q~lGtT~GALifaiiv~~~--~~p~~T~~~~iv~~isG~~Ws~GQ~ 74 (288)
T COG4975 5 LIALLPALGWGSIPL---VANKFGG----KPYQ-QTLGTTLGALIFAIIVFLF--VSPELTLTIFIVGFISGAFWSFGQA 74 (288)
T ss_pred HHHHHHHHHhcccce---eeeecCC----ChhH-hhhhccHHHHHHHHHHhee--ecCccchhhHHHHHHhhhHhhhhhh
Confidence 445666777777433 3455322 2322 1112223333333322211 2234555555666667788899999
Q ss_pred HhHhhccCccchHHH-HHHHhHHHHHHHHHHHhcCCcCCchhh----hhHHHHhhhhhhhccccc----cc----chhHH
Q 020772 92 FALASLKGVNIPMYI-AIKRLTPLAVLVAGFFSGKGKPTTQVT----LSVLLTATGCVIAALGDF----SF----DLSGY 158 (321)
Q Consensus 92 ~~~~al~~~~~~~~~-~l~~~~pv~~~l~~~l~~ke~~~~~~~----~ai~~~~~Gv~l~~~~~~----~~----~~~G~ 158 (321)
.++-|.++..+|.+. +-..+..+-+.+++.+.++|..+..+. .|+++.++|+.+-+..|. +. --.|+
T Consensus 75 ~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi 154 (288)
T COG4975 75 NQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGI 154 (288)
T ss_pred hhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhhe
Confidence 999999999888776 555678889999999999999998774 678888889988766442 11 14688
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHH-HHhCCchhhhHhhhhccCchHHHHHHHHHHHH
Q 020772 159 SMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLI-IVTGEFPGSLSLLFSKSNSFSFLVILILSLVM 237 (321)
Q Consensus 159 ~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 237 (321)
...+.|.+.|-.|.+..|... .|.+....-|. .+.+...... ...+|. . ..+..+.-+..|+.
T Consensus 155 ~~L~iSt~GYv~yvvl~~~f~----v~g~saiLPqA-iGMv~~ali~~~~~~~~-~----------~~K~t~~nii~G~~ 218 (288)
T COG4975 155 VILLISTLGYVGYVVLFQLFD----VDGLSAILPQA-IGMVIGALILGFFKMEK-R----------FNKYTWLNIIPGLI 218 (288)
T ss_pred eeeeeeccceeeeEeeecccc----ccchhhhhHHH-HHHHHHHHHHhhccccc-c----------hHHHHHHHHhhHHH
Confidence 999999999999998877652 35555554443 2333333222 222111 1 11223334566777
Q ss_pred HHHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhh----hHHHHHHHHHHHHHH
Q 020772 238 GIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALN----VTGLLINTAGGVWYS 300 (321)
Q Consensus 238 ~~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~----~iG~~lil~g~~~~~ 300 (321)
-...|...+.+.++.+..+.-.++.+.-+.+.+-|.++++| +=|..+ ++|+++++.|..+..
T Consensus 219 Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~e-kKtkkEm~~v~iGiilivvgai~lg 284 (288)
T COG4975 219 WAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGE-KKTKKEMVYVIIGIILIVVGAILLG 284 (288)
T ss_pred HHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEec-cCchhhhhhhhhhHHHHHHHhhhhh
Confidence 77788887777766666565566788889999999999998 767554 567888888776544
No 62
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.93 E-value=0.00017 Score=64.46 Aligned_cols=130 Identities=16% Similarity=0.096 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhhcCCCCCC--HHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHHHHHHHHH
Q 020772 167 FQTMYLVLVEKSGAEDGLS--SVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFT 244 (321)
Q Consensus 167 ~~a~~~v~~k~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 244 (321)
++..+.+.++++.++...+ +.-+++.|.....+...+....... .+ +. ..+ +.-....+++-.+...+
T Consensus 11 ~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~-~~------~~--~~~-~~~~~~~~~~~~~~~~~ 80 (303)
T PF08449_consen 11 GCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKF-PK------SR--KIP-LKKYAILSFLFFLASVL 80 (303)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-cC------CC--cCh-HHHHHHHHHHHHHHHHH
Confidence 3444667888887665555 7788888887777777766554430 00 00 111 22334456666666677
Q ss_pred HHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHHHHhhh
Q 020772 245 MFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQQK 307 (321)
Q Consensus 245 ~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~~~~~~ 307 (321)
.+.+.++.+..+..+....+++.+.+.+.+++++ +.+..++.+..++.+|+.+....+.+++
T Consensus 81 ~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k-~y~~~~~~~v~li~~Gv~~~~~~~~~~~ 142 (303)
T PF08449_consen 81 SNAALKYISYPTQIVFKSSKPIPVMILGVLILGK-RYSRRQYLSVLLITIGVAIFTLSDSSSS 142 (303)
T ss_pred HHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCc-cccHHHHHHHHHHHhhHheeeecccccc
Confidence 8888999999999999999999999999999996 9999999999999999999887654433
No 63
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.90 E-value=7.9e-05 Score=57.40 Aligned_cols=72 Identities=17% Similarity=0.108 Sum_probs=62.7
Q ss_pred HHHHHH-HHHHHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHH--hcCCcCCchhhhhHHHHhhhhhhhcccc
Q 020772 79 LLPVSL-FYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFF--SGKGKPTTQVTLSVLLTATGCVIAALGD 150 (321)
Q Consensus 79 ~~~~~~-~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l--~~ke~~~~~~~~ai~~~~~Gv~l~~~~~ 150 (321)
++..|+ ++....+++++++++.|++.+.-+.+..++.+.+.++. ++||++++.++.++.++++|+.+...++
T Consensus 50 ~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 50 AVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 344454 58899999999999999999999999999888888885 8999999999999999999999986543
No 64
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.90 E-value=0.0008 Score=59.18 Aligned_cols=80 Identities=16% Similarity=0.136 Sum_probs=70.7
Q ss_pred cCChhhhHHHHHHHHHHH-HHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcc
Q 020772 70 AIDLMTAKKLLPVSLFYN-ANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 148 (321)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~-~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~ 148 (321)
+.+.+.+......+++.. ....+++++++..+++..+.+..+.|++..++++++++|+++..++.+..+.+.|+.+...
T Consensus 208 ~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~ 287 (292)
T COG0697 208 PILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASL 287 (292)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhc
Confidence 445566777777788765 6899999999999999999999999999999999999999999999999999999998754
Q ss_pred c
Q 020772 149 G 149 (321)
Q Consensus 149 ~ 149 (321)
.
T Consensus 288 ~ 288 (292)
T COG0697 288 R 288 (292)
T ss_pred c
Confidence 4
No 65
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=97.82 E-value=0.00017 Score=54.13 Aligned_cols=63 Identities=14% Similarity=-0.062 Sum_probs=53.8
Q ss_pred HHHHHH-HHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHH
Q 020772 237 MGIILN-FTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYS 300 (321)
Q Consensus 237 ~~~~~~-~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~ 300 (321)
..+... ++...+.++.+......+.++.++.+.+.|+++||| ++|..+++|+.+++.|+.+..
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E-~ls~~~~~Gi~lii~Gv~~i~ 108 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHE-PVSPRHWCGVAFIIGGIVILG 108 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHh
Confidence 333333 555578899999998888889999999999999998 999999999999999988754
No 66
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=3.5e-05 Score=66.99 Aligned_cols=222 Identities=10% Similarity=0.018 Sum_probs=130.0
Q ss_pred HHHHHHH-HHHHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhccccc---cc-
Q 020772 79 LLPVSLF-YNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDF---SF- 153 (321)
Q Consensus 79 ~~~~~~~-~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~~---~~- 153 (321)
+...|++ +...-...+.|..+.|++..+-+.+++.+..++++..++|||++....+|..+++.|-.++..... +.
T Consensus 66 ~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~ 145 (335)
T KOG2922|consen 66 LWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIE 145 (335)
T ss_pred HHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccc
Confidence 3344554 778888889999999999999999999999999999999999999999999999999998654321 11
Q ss_pred c---------hhHHH-HHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhh---h
Q 020772 154 D---------LSGYS-MALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLF---S 220 (321)
Q Consensus 154 ~---------~~G~~-~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 220 (321)
+ -.+++ +..+-.+....-..+.|+ ++ -..+++.|....+.+...-..-.. ..-...+..+ +
T Consensus 146 t~~el~~~~~~~~Fliy~~~iil~~~il~~~~~p---~~--g~tnilvyi~i~s~iGS~tV~svK-alg~aiklt~~g~~ 219 (335)
T KOG2922|consen 146 SVEEVWELATEPGFLVYVIIIILIVLILIFFYAP---RY--GQTNILVYIGICSLIGSLTVMSVK-ALGIAIKLTFSGNN 219 (335)
T ss_pred cHHHHHHHhcCccHHHHHHHHHHHHHHHheeecc---cc--cccceeehhhHhhhhcceeeeeHH-HHHHHHHHHhcCCc
Confidence 1 01111 111111111111111221 21 122445555544443221111000 0000000000 1
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhhh-hHHHHHHhhhheeCcc-ccch----hhhHHHHHHHH
Q 020772 221 KSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVL-KGVGSTTLGFVVLGGV-QVRA----LNVTGLLINTA 294 (321)
Q Consensus 221 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~-~~v~~~~~~~~~~~e~-~~t~----~~~iG~~lil~ 294 (321)
+...+..|..++....+..........+.+..++..++.+.++ -+..++..|.++|+|- ..+. ....|+.+++.
T Consensus 220 ql~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~ 299 (335)
T KOG2922|consen 220 QLFYPLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFL 299 (335)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhh
Confidence 1223344555555554444444556688888888666665555 6777888888999871 2333 45678888888
Q ss_pred HHHHHHHHHHhh
Q 020772 295 GGVWYSYAKYQQ 306 (321)
Q Consensus 295 g~~~~~~~~~~~ 306 (321)
|+.+....|..+
T Consensus 300 G~flL~~~kd~~ 311 (335)
T KOG2922|consen 300 GIFLLHRTKDME 311 (335)
T ss_pred eeeEeeeecccc
Confidence 888876555433
No 67
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.75 E-value=0.00053 Score=61.50 Aligned_cols=140 Identities=14% Similarity=0.092 Sum_probs=90.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHH
Q 020772 155 LSGYSMALTSVFFQTMYLVLVEKSGAE-DGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILIL 233 (321)
Q Consensus 155 ~~G~~~~l~s~~~~a~~~v~~k~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 233 (321)
+.+.+++-.-++|-+...+....+.++ .+.+..| .++....-.+...+....-....+.. ... ..+ |+--+.
T Consensus 12 ~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Q-s~~~Y~~l~~vy~~~~~~r~~~~~~~----~~~-~~~-~w~y~l 84 (334)
T PF06027_consen 12 WIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQ-SFFNYVLLALVYTPILLYRRGFKKWL----KVL-KRP-WWKYFL 84 (334)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHH-HHHHHHHHHHHHhhhhhhccccccch----hhc-chh-HHHHHH
Confidence 344555555555555555555554443 2223333 34444333333333333221111111 001 122 333445
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHH
Q 020772 234 SLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYA 302 (321)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~ 302 (321)
.+++=...|+....+.++++.++..++.....+++.++++++++| ++++.|++|+++.+.|+.+....
T Consensus 85 la~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~-ry~~~~~~gv~i~i~Gv~lv~~s 152 (334)
T PF06027_consen 85 LALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKR-RYSWFHILGVLICIAGVVLVVVS 152 (334)
T ss_pred HHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHh-hhhHHHHHHHHHHHhhhhheeee
Confidence 578888899999999999999999999999999999999999997 99999999999999998876554
No 68
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.69 E-value=0.00026 Score=53.58 Aligned_cols=72 Identities=10% Similarity=0.101 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHhHhhccCccchHHHHH-HHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhccc
Q 020772 78 KLLPVSLFYNANVAFALASLKGVNIPMYIAI-KRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALG 149 (321)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~ 149 (321)
+....-+++..+.++...+++++|.+.+--+ ....-+.+++.+.+++||++++.++.++.+.++|++.....
T Consensus 32 ~~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 32 GFILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 3445556688899999999999999988766 46899999999999999999999999999999999987543
No 69
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.67 E-value=0.0019 Score=50.47 Aligned_cols=130 Identities=17% Similarity=0.197 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHHH
Q 020772 158 YSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLVM 237 (321)
Q Consensus 158 ~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 237 (321)
..+++.+..+-+....+..++.++.+ ||+...+.++..+.+.+....+..++. +. +...+.++|. ...|++
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~-~~-----~~~~~~p~w~--~lGG~l 73 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRP-SL-----ASLSSVPWWA--YLGGLL 73 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhccc-cc-----chhccCChHH--hccHHH
Confidence 46677888888888888777766553 699999999999999999988887654 22 1122223232 237888
Q ss_pred HHHHHHHHHHHHhccchhHHHHHhhh-hHHHHHHhhhh-e---eCccccchhhhHHHHHHHHHHH
Q 020772 238 GIILNFTMFLCTIVNSALTTTIVGVL-KGVGSTTLGFV-V---LGGVQVRALNVTGLLINTAGGV 297 (321)
Q Consensus 238 ~~~~~~~~~~~~~~~~a~~~s~~~~~-~~v~~~~~~~~-~---~~e~~~t~~~~iG~~lil~g~~ 297 (321)
+...-.+....+++.++......... +-+.+.+++.+ + -++ ++++..++|.++++.|+.
T Consensus 74 G~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~-~~~~~r~lG~~l~i~Gv~ 137 (138)
T PF04657_consen 74 GVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKR-PFSLRRILGLALMIAGVI 137 (138)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCC-CCCHHHHHHHHHHHHHHh
Confidence 88888888888899999877776666 55556666664 2 233 799999999999999975
No 70
>PRK13499 rhamnose-proton symporter; Provisional
Probab=97.61 E-value=0.0018 Score=58.19 Aligned_cols=137 Identities=18% Similarity=0.059 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH--hhhHHHHHHH--HHHHhCCchhhhHhhhhccCchHHHHH
Q 020772 155 LSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYN--SFLSLPFLVF--LIIVTGEFPGSLSLLFSKSNSFSFLVI 230 (321)
Q Consensus 155 ~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (321)
..|+++.+++++|++.+.+-+|| .|+. ++|.. |- ..++.++... ..+..++..+.. .. .+...+..
T Consensus 6 ~~G~~~~~i~~~~~GS~~~p~K~-~k~w---~wE~~-W~v~gi~~wl~~~~~~g~~~~~~f~~~~----~~-~~~~~~~~ 75 (345)
T PRK13499 6 ILGIIWHLIGGASSGSFYAPFKK-VKKW---SWETM-WSVGGIFSWLILPWLIAALLLPDFWAYY----SS-FSGSTLLP 75 (345)
T ss_pred HHHHHHHHHHHHHhhcccccccc-cCCC---chhHH-HHHHHHHHHHHHHHHHHHHHhhhHHHHH----Hh-cCHHHHHH
Confidence 57999999999999999999988 4443 33433 32 1111111111 111112222221 11 24556777
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchh-HHHHHhhhhHHHHHHhhhheeCccccc--------hhhhHHHHHHHHHHHHHHH
Q 020772 231 LILSLVMGIILNFTMFLCTIVNSAL-TTTIVGVLKGVGSTTLGFVVLGGVQVR--------ALNVTGLLINTAGGVWYSY 301 (321)
Q Consensus 231 i~~~~~~~~~~~~~~~~~~~~~~a~-~~s~~~~~~~v~~~~~~~~~~~e~~~t--------~~~~iG~~lil~g~~~~~~ 301 (321)
-++.|++-...|...+..+|+.+.+ ...+..-++-+.+.+++.+++|| .+ ....+|.+++++|+.+-++
T Consensus 76 ~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~ge--w~~~~~t~~g~~~~~gv~liliGi~l~s~ 153 (345)
T PRK13499 76 VFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGN--FDVLLATNGGRMTLLGVLVALIGVAIVGR 153 (345)
T ss_pred HHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccc--cccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888888888888764 44555567889999999999986 33 4578899999999998887
Q ss_pred HH
Q 020772 302 AK 303 (321)
Q Consensus 302 ~~ 303 (321)
.-
T Consensus 154 Ag 155 (345)
T PRK13499 154 AG 155 (345)
T ss_pred hh
Confidence 43
No 71
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.58 E-value=0.0013 Score=49.15 Aligned_cols=70 Identities=11% Similarity=0.104 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhHhhccCccchHHHHH-HHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhccc
Q 020772 80 LPVSLFYNANVAFALASLKGVNIPMYIAI-KRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALG 149 (321)
Q Consensus 80 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~ 149 (321)
...-+++..+.++...+++++|.+.+-.+ ....-+.+++.+++++||++++.++.++.+.++|++.....
T Consensus 34 i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34445577888888999999999998766 45788899999999999999999999999999999997553
No 72
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=97.53 E-value=0.003 Score=53.36 Aligned_cols=131 Identities=11% Similarity=0.069 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHcCccccCcCChhhhHHHHHHHHHH-HHHHH
Q 020772 13 LGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFY-NANVA 91 (321)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~nK~~~~~~~~p~~i~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 91 (321)
.++..++.-+.++....+..|-+-+..+ ...=+..-+.+++++..++..... ...-.+++....-+..+++- ..-..
T Consensus 148 ~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~-g~~g~a~gm~vAaviv~Pig~~~a-g~~l~~p~ll~laLgvavlSSalPYs 225 (292)
T COG5006 148 VGVALALGAGACWALYIVLGQRAGRAEH-GTAGVAVGMLVAALIVLPIGAAQA-GPALFSPSLLPLALGVAVLSSALPYS 225 (292)
T ss_pred HHHHHHHHHhHHHHHHHHHcchhcccCC-CchHHHHHHHHHHHHHhhhhhhhc-chhhcChHHHHHHHHHHHHhcccchH
Confidence 3445555566666666666666653222 233455667777877777654221 11122333333333444543 35566
Q ss_pred HhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhh
Q 020772 92 FALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVI 145 (321)
Q Consensus 92 ~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l 145 (321)
+...+++++|...+.++.+..|.+.++.++++++|++|..||.++..++.+..=
T Consensus 226 LEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG 279 (292)
T COG5006 226 LEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAG 279 (292)
T ss_pred HHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Confidence 778999999999999999999999999999999999999999999988877653
No 73
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.51 E-value=0.0014 Score=48.06 Aligned_cols=72 Identities=11% Similarity=0.041 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhccCccchHHH-HHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcc
Q 020772 77 KKLLPVSLFYNANVAFALASLKGVNIPMYI-AIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 148 (321)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~ 148 (321)
.+.+..-+++..+..+...|++++|.+.+- +-...-.+.+++.+++++||+.+..++.++.+.+.|++....
T Consensus 31 ~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 31 WPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred chHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 344445566778888888999999988765 566778889999999999999999999999999999988654
No 74
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.49 E-value=0.0019 Score=47.69 Aligned_cols=72 Identities=11% Similarity=0.080 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhccCccchHHH-HHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcc
Q 020772 77 KKLLPVSLFYNANVAFALASLKGVNIPMYI-AIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 148 (321)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~ 148 (321)
.+.+..-+++..+.++...+++++|.+.+- +-.....+.+++.+.+++||++++.++.++.+.+.|++....
T Consensus 30 ~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 30 TPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 334444556788888899999999998866 445578899999999999999999999999999999998643
No 75
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.43 E-value=0.0025 Score=47.39 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHHhHhhccCccchHHH-HHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhh
Q 020772 78 KLLPVSLFYNANVAFALASLKGVNIPMYI-AIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIA 146 (321)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~-~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~ 146 (321)
.....-..+..+.++...+++++|.+.+- +-.....+.+++.+.+++||++++.|+.++.+.+.|++..
T Consensus 37 ~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 37 YGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 34444556778888889999999998866 4455778889999999999999999999999999999875
No 76
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.26 E-value=0.016 Score=45.29 Aligned_cols=126 Identities=10% Similarity=-0.013 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHcCcc-ccCcCChhhhHHHHHHHHHHHHHHHHhHhhc
Q 020772 19 LSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYT-KSKAIDLMTAKKLLPVSLFYNANVAFALASL 97 (321)
Q Consensus 19 ~~~~~~~~~~~~~nK~~~~~~~~p~~i~~~r~~~~~l~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al 97 (321)
+.-+........+|-.+-+..+.|..-++.-+.++++.+.++....+. +.+..+ +.-++...-|++......+..+..
T Consensus 7 ~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~-~~p~w~~lGG~lG~~~V~~~~~~v 85 (138)
T PF04657_consen 7 LLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLS-SVPWWAYLGGLLGVFFVLSNIILV 85 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhc-cCChHHhccHHHHHHHHHHHHHHh
Confidence 344444555556676666666667877777777887776665543322 222222 112344446777888899999999
Q ss_pred cCccchHHHHHHHh-HHHHHHHHHHH----hcCCcCCchhhhhHHHHhhhhhh
Q 020772 98 KGVNIPMYIAIKRL-TPLAVLVAGFF----SGKGKPTTQVTLSVLLTATGCVI 145 (321)
Q Consensus 98 ~~~~~~~~~~l~~~-~pv~~~l~~~l----~~ke~~~~~~~~ai~~~~~Gv~l 145 (321)
..+.++....+.-+ +.+...+++.+ .-|++++++|.+++.+.++|+.+
T Consensus 86 p~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 86 PRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 99998888765554 66666677775 45899999999999999999864
No 77
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.22 E-value=0.0015 Score=49.39 Aligned_cols=58 Identities=10% Similarity=0.074 Sum_probs=46.2
Q ss_pred HHHHHhccch-hHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHHH
Q 020772 245 MFLCTIVNSA-LTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAK 303 (321)
Q Consensus 245 ~~~~~~~~~a-~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~~ 303 (321)
...+.|+.+. .-.++...+..+.+.+.|+++||| ++|+.+++|+.+++.|+...+...
T Consensus 47 ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E-~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 47 LSFAVKKIALGVAYALWEGIGILFITLFSVLLFDE-SLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHhhcCC
Confidence 3355666655 334555667889999999999998 999999999999999998876544
No 78
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.11 E-value=0.0018 Score=46.95 Aligned_cols=58 Identities=17% Similarity=0.115 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhHhhccCccchHHH-HHHHhHHHHHHHHHHHhcCCcCCchhhhhHHH
Q 020772 81 PVSLFYNANVAFALASLKGVNIPMYI-AIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLL 138 (321)
Q Consensus 81 ~~~~~~~~~~~~~~~al~~~~~~~~~-~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~ 138 (321)
..-.++..+.++...+++++|.+.+- +......+.+.+.+.+++||++++.|+.++.+
T Consensus 34 ~~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 34 LAVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence 33446888889999999999999885 45668999999999999999999999999876
No 79
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=97.11 E-value=0.0012 Score=56.99 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHHHHh
Q 020772 226 SFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAKYQ 305 (321)
Q Consensus 226 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~~~~ 305 (321)
+.......-+++-..-|...+.+.++.+|.+..+....|.+.+.++++++++. +++..||++..+...|+.+....+..
T Consensus 15 ~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r-~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 15 KDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKR-RLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHc-ccchhhHHHHHHHHHHHheeecCCcc
Confidence 33455556677777778889999999999999999999999999999999995 99999999999999999987765433
No 80
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.95 E-value=0.027 Score=48.86 Aligned_cols=67 Identities=19% Similarity=0.262 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhh----hHHHHhhhh
Q 020772 77 KKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTL----SVLLTATGC 143 (321)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~----ai~~~~~Gv 143 (321)
.+-...|+++...+.++..+.+...++.+-.+..+.++..++-+.+++||+=+++++. ++++.++|.
T Consensus 196 ~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~ 266 (269)
T PF06800_consen 196 WKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGA 266 (269)
T ss_pred HHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhh
Confidence 3445568999999999999999999999999999999999999999999998888764 444444444
No 81
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=96.94 E-value=0.0021 Score=57.15 Aligned_cols=118 Identities=20% Similarity=0.147 Sum_probs=83.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHH
Q 020772 154 DLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILIL 233 (321)
Q Consensus 154 ~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 233 (321)
...|..+++.++++.+...+++|+-..+.+.++.. +... ..+...++.+|..++.
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~---------------------~~~~----~~~~l~~~~W~~G~~~ 59 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLR---------------------AGSG----GRSYLRRPLWWIGLLL 59 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---------------------ccch----hhHHHhhHHHHHHHHH
Confidence 46899999999999999999999865442111110 0000 0122223444555543
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHH
Q 020772 234 SLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSY 301 (321)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~ 301 (321)
.+ .+- ...+.+....+++.++.++.+.-+...+++..+++| +++...+.|..+++.|..+.-.
T Consensus 60 ~~-~g~---~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e-~~~~~~~~G~~l~i~G~~liv~ 122 (300)
T PF05653_consen 60 MV-LGE---ILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGE-KLTRRDIVGCALIILGSVLIVI 122 (300)
T ss_pred Hh-cch---HHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcc-cchHhHHhhHHHHHhhheeeEE
Confidence 32 233 344556788888899999999999999999999998 9999999999999999876543
No 82
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=96.90 E-value=0.0049 Score=46.03 Aligned_cols=56 Identities=13% Similarity=0.089 Sum_probs=45.6
Q ss_pred HHHHhccch-hHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHH
Q 020772 246 FLCTIVNSA-LTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYA 302 (321)
Q Consensus 246 ~~~~~~~~a-~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~ 302 (321)
..+.++.+. .-.++...+..+.+.+.|+++||| ++|+.+++|+.+++.|+...+..
T Consensus 48 ~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e-~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 48 AQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQ-RLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHhcC
Confidence 355666665 344566677889999999999998 99999999999999999987543
No 83
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=96.89 E-value=0.032 Score=41.49 Aligned_cols=54 Identities=15% Similarity=0.171 Sum_probs=45.2
Q ss_pred HHHHhccch-hHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHH
Q 020772 246 FLCTIVNSA-LTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYS 300 (321)
Q Consensus 246 ~~~~~~~~a-~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~ 300 (321)
..+.|+.+. ...++...+..+.+.+.|+++||| ++|+.+++|+.+++.|+...+
T Consensus 53 s~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e-~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 53 SQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQ-RLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHHHHhc
Confidence 355666665 456777788889999999999998 999999999999999998753
No 84
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=96.86 E-value=0.0076 Score=44.19 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=46.9
Q ss_pred HHHhccch-hHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHH
Q 020772 247 LCTIVNSA-LTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYA 302 (321)
Q Consensus 247 ~~~~~~~a-~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~ 302 (321)
.++|+.+- +-.++...+-.+.+.+.|+++|+| ++|..+++|..+++.|+...+..
T Consensus 49 ~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E-~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 49 LALKTIPLGVAYAIWTGIGIVGTALVGVLLFGE-SLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCC-cCCHHHHHHHHHHHHHHHHhhhc
Confidence 45677665 556788888999999999999998 99999999999999999887653
No 85
>PRK11431 multidrug efflux system protein; Provisional
Probab=96.52 E-value=0.02 Score=42.27 Aligned_cols=55 Identities=16% Similarity=0.165 Sum_probs=46.3
Q ss_pred HHHHhccch-hHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHH
Q 020772 246 FLCTIVNSA-LTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSY 301 (321)
Q Consensus 246 ~~~~~~~~a-~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~ 301 (321)
..+.|+.+. ...++...+..+.+.+.|+++||| ++|+.+++|+.+++.|+...+.
T Consensus 47 s~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e-~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 47 AWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGE-SASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHhhhc
Confidence 355666665 556788888999999999999998 9999999999999999987653
No 86
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.17 E-value=0.18 Score=39.54 Aligned_cols=139 Identities=13% Similarity=0.077 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHH
Q 020772 155 LSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILS 234 (321)
Q Consensus 155 ~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 234 (321)
+...+..+.+..+-....-...|+.+..+ +|.--.+..+..|...+..+....+..++.. ...+.++| ....
T Consensus 4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~-spl~As~isf~vGt~~L~~l~l~~~~~~~~a-----~~~~~pwW--~~~G 75 (150)
T COG3238 4 YLYLLFAILAGALLPLQAAINGRLARYLG-SPLLASLISFLVGTVLLLILLLIKQGHPGLA-----AVASAPWW--AWIG 75 (150)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCchh-----hccCCchH--HHHc
Confidence 45667788888888888888777766553 7888888888898888888877754444331 11122222 2234
Q ss_pred HHHHHHHHHHHHHHHhccchhH-HHHHhhhhHHHHHHhhhheeC---ccccchhhhHHHHHHHHHHHHHHH
Q 020772 235 LVMGIILNFTMFLCTIVNSALT-TTIVGVLKGVGSTTLGFVVLG---GVQVRALNVTGLLINTAGGVWYSY 301 (321)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~a~~-~s~~~~~~~v~~~~~~~~~~~---e~~~t~~~~iG~~lil~g~~~~~~ 301 (321)
|.++..+-........+.+++. ....-.-+-+.+.+++.+=+. +.+++...++|+.+++.|+++...
T Consensus 76 G~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 76 GLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred cchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 5666666555555666666644 444444466666777665333 137899999999999999665443
No 87
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=96.04 E-value=0.078 Score=44.96 Aligned_cols=66 Identities=11% Similarity=-0.005 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhh
Q 020772 80 LPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVI 145 (321)
Q Consensus 80 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l 145 (321)
....+.......+..+.++|.+.....+...+.++++.+++.++++|+++..++.+..+++.|+.+
T Consensus 156 ~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 156 WIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 334455666667788889999999999999999999999999999999999999999999998754
No 88
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.85 E-value=0.5 Score=37.14 Aligned_cols=135 Identities=15% Similarity=0.010 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHcC-ccccCcCChhhhHHHHHHHHHHHHHHH
Q 020772 13 LGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMG-YTKSKAIDLMTAKKLLPVSLFYNANVA 91 (321)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~nK~~~~~~~~p~~i~~~r~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (321)
+..+..+.-+.+.....-+|-.+-...+.|..-.+.-+.++++.+..+...+ ++......++..++...-|++.+....
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~vt 84 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFVT 84 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhhh
Confidence 3445555566667777778887777667787777777777766666554432 212112112222333444555555555
Q ss_pred HhHhhccCccchHHH-HHHHhHHHHHHHHHHHhc----CCcCCchhhhhHHHHhhhhhhhc
Q 020772 92 FALASLKGVNIPMYI-AIKRLTPLAVLVAGFFSG----KGKPTTQVTLSVLLTATGCVIAA 147 (321)
Q Consensus 92 ~~~~al~~~~~~~~~-~l~~~~pv~~~l~~~l~~----ke~~~~~~~~ai~~~~~Gv~l~~ 147 (321)
........+.+...+ +..+-+-+..++++.+=. +++++..++.++++.++|+.+..
T Consensus 85 ~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 85 SSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred hhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 555666666655555 455556666666665433 58899999999999999965543
No 89
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=95.68 E-value=0.53 Score=42.14 Aligned_cols=141 Identities=15% Similarity=0.114 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHhhhHHHHHHHHHHHhCCc--hhhhHhhhh-ccCchHHHHHHHH
Q 020772 159 SMALTSVFFQTMYLVLVEKSGA--EDGLSSVEIMFYNSFLSLPFLVFLIIVTGEF--PGSLSLLFS-KSNSFSFLVILIL 233 (321)
Q Consensus 159 ~~~l~s~~~~a~~~v~~k~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~i~~ 233 (321)
+..+...+-++......|...+ +.++.|....+..=.+-.+++....+..... ....+...+ .+..+....-+..
T Consensus 18 ~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk~~v 97 (345)
T KOG2234|consen 18 LSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLKVSV 97 (345)
T ss_pred HHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHHHHH
Confidence 3334444455555555554432 2346777777776666666666655543211 111111111 1112212333344
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHH
Q 020772 234 SLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYS 300 (321)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~ 300 (321)
-+++-.+-|...+.+..+.+|.+..+...++...+.++..+++++ +++..||...++...|+....
T Consensus 98 Pa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~r-kLs~~Qw~Al~lL~~Gv~~vQ 163 (345)
T KOG2234|consen 98 PALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRR-KLSRLQWMALVLLFAGVALVQ 163 (345)
T ss_pred HHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHh
Confidence 445555566777889999999999999999999999999999996 999999999999999988776
No 90
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.61 E-value=0.039 Score=41.18 Aligned_cols=69 Identities=14% Similarity=0.296 Sum_probs=56.7
Q ss_pred hHHHHHHHHHHHHHHHHhHhhccCccchHHHHH-HHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhh
Q 020772 76 AKKLLPVSLFYNANVAFALASLKGVNIPMYIAI-KRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVI 145 (321)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l 145 (321)
++..+|.. ++-.....+++.+...+.|.+.-+ .++.-+++.+.++++.+|..+++++.++.+++.|+.+
T Consensus 42 ~~y~ipf~-lNq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 42 PKYIIPFL-LNQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeee
Confidence 35555543 355667778888999999988866 6899999999999998898899999999999999875
No 91
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=95.46 E-value=0.046 Score=39.51 Aligned_cols=54 Identities=19% Similarity=0.159 Sum_probs=29.3
Q ss_pred HHHHH-HHHHHHHhccchhHH-HHHhhhhHHHHHHhhhheeCccccchhhhHHHHHH
Q 020772 238 GIILN-FTMFLCTIVNSALTT-TIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLIN 292 (321)
Q Consensus 238 ~~~~~-~~~~~~~~~~~a~~~-s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~li 292 (321)
+...+ ++...+.|+.+.... ++...+..+.+.+.|.++||| ++|..+++|+.++
T Consensus 38 ~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E-~~s~~~~~gi~lI 93 (93)
T PF00893_consen 38 GYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGE-SLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHhheeeC
Confidence 33343 444467788776554 666778899999999999998 9999999999874
No 92
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=94.93 E-value=0.04 Score=47.49 Aligned_cols=133 Identities=17% Similarity=0.178 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHH
Q 020772 157 GYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLV 236 (321)
Q Consensus 157 G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 236 (321)
|.+..+.|+++++.+-+=.||.-.. |++-.+.++.....+......+.. +.+ .++...++.|.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~g---Dg~~fQw~~~~~i~~~g~~v~~~~-~~p-------------~f~p~amlgG~ 63 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDTG---DGFFFQWVMCSGIFLVGLVVNLIL-GFP-------------PFYPWAMLGGA 63 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccCC---CcHHHHHHHHHHHHHHHHHHHHhc-CCC-------------cceeHHHhhhh
Confidence 5678889999999988888876322 666666665544444333333332 211 12223344555
Q ss_pred HHHHHHHHHHHHHhccch-hHHHHHhhhhHHHHHHhhhh-eeCcc----ccchhhhHHHHHHHHHHHHHHHHHHhh
Q 020772 237 MGIILNFTMFLCTIVNSA-LTTTIVGVLKGVGSTTLGFV-VLGGV----QVRALNVTGLLINTAGGVWYSYAKYQQ 306 (321)
Q Consensus 237 ~~~~~~~~~~~~~~~~~a-~~~s~~~~~~~v~~~~~~~~-~~~e~----~~t~~~~iG~~lil~g~~~~~~~~~~~ 306 (321)
+-...|.+..-++|..+- .-..+-+..+-+.+...|-+ +||++ .-.+..++|++++++|..+|...|..+
T Consensus 64 lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~ 139 (254)
T PF07857_consen 64 LWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE 139 (254)
T ss_pred hhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence 555566666666666553 22333444455555555543 55431 135889999999999999998765443
No 93
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=94.82 E-value=0.11 Score=46.42 Aligned_cols=137 Identities=13% Similarity=0.086 Sum_probs=98.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh--ccCc-hHHHHHHHHHHHHHHHH-HHHHc--Cccc----cCcCChhhhHHHH
Q 020772 11 PFLGLFAALSYGVSSMAMVFINKAVIM--QYAH-SMTLLTLQQLATALLIQ-AGRQM--GYTK----SKAIDLMTAKKLL 80 (321)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~nK~~~~--~~~~-p~~i~~~r~~~~~l~l~-~~~~~--~~~~----~~~~~~~~~~~~~ 80 (321)
.+.+...+.........-.++.|.++. +... ++.+...+.-++...+. +.... +... ..+.+.+ ...+.
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~-~~~~~ 239 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVT-FLILL 239 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchh-hHHHH
Confidence 355666666677777777888888884 3332 56677777777777776 54332 1111 1122222 33444
Q ss_pred HHHHHHHHHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcc
Q 020772 81 PVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 148 (321)
Q Consensus 81 ~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~ 148 (321)
..+++..+.+...+..+.++++-++++....--+.+...+++++++++++.+.+|..+.+.|+.+...
T Consensus 240 ~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 240 LNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR 307 (316)
T ss_pred HHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 44566667778888899999999999999998889999999999999999999999999999998754
No 94
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.68 E-value=0.84 Score=40.01 Aligned_cols=136 Identities=12% Similarity=0.062 Sum_probs=92.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhccCc-hHHHHHHHHHHHHHHHHHHHHcCc-----cccCcCChhhhHHHHHHH
Q 020772 10 SPFLGLFAALSYGVSSMAMVFINKAVIMQYAH-SMTLLTLQQLATALLIQAGRQMGY-----TKSKAIDLMTAKKLLPVS 83 (321)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~nK~~~~~~~~-p~~i~~~r~~~~~l~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 83 (321)
....++.....|...=...+-..+.++.++.- +..+.+.-.+..++.-........ .+.-+..++-+++++..+
T Consensus 169 ns~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s 248 (327)
T KOG1581|consen 169 NSPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYS 248 (327)
T ss_pred CchHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHH
Confidence 34566666666666544444555666665542 222333333333332222111111 111233456778999999
Q ss_pred HHHHHHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhh
Q 020772 84 LFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVI 145 (321)
Q Consensus 84 ~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l 145 (321)
.+.+..+.+-++-++.-.+-+.+.+..+.=++..+++.+.++++++..||.++.+++.|..+
T Consensus 249 ~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 249 TCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred HhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 99998888888888888888888999999999999999999999999999999999888776
No 95
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=94.67 E-value=1.9 Score=38.63 Aligned_cols=147 Identities=18% Similarity=0.087 Sum_probs=78.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHH
Q 020772 155 LSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILS 234 (321)
Q Consensus 155 ~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 234 (321)
..|+++..+++++.+.+.+=.||+. + .+....=..+..++-++..+..... ..++..+.. ... +...+....+.
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkvk-~--WsWEs~Wlv~gi~swli~P~~~a~l-~ip~~~~i~-~~~-~~~~l~~~~l~ 79 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKVK-G--WSWESYWLVQGIFSWLIVPWLWALL-AIPDFFSIY-SAT-PASTLFWTFLF 79 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhcC-C--ccHHHHHHHHHHHHHHHHHHHHHHH-hCCcHHHHH-HhC-ChhHHHHHHHH
Confidence 5799999999999999999888863 3 3444443445555555444443322 233332221 111 11222222333
Q ss_pred HHHHHHHHHHHHHHHhccch-hHHHHHhhhhHHHHHHhhhheeCc------cccchhhhHHHHHHHHHHHHHHHHHHhhh
Q 020772 235 LVMGIILNFTMFLCTIVNSA-LTTTIVGVLKGVGSTTLGFVVLGG------VQVRALNVTGLLINTAGGVWYSYAKYQQK 307 (321)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~a-~~~s~~~~~~~v~~~~~~~~~~~e------~~~t~~~~iG~~lil~g~~~~~~~~~~~~ 307 (321)
|+.--+.+...-..+|+.+- ...++..-+..+++.++.-++-++ .+-....++|..+.++|+.+..+....|+
T Consensus 80 G~lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke 159 (344)
T PF06379_consen 80 GVLWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKE 159 (344)
T ss_pred HHHHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhh
Confidence 33322222222245555543 334444444455555554433221 13345788999999999999887654433
No 96
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=94.62 E-value=0.059 Score=46.12 Aligned_cols=76 Identities=7% Similarity=-0.115 Sum_probs=65.0
Q ss_pred CChhhhHHHHHHHHHHHHHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhh
Q 020772 71 IDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIA 146 (321)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~ 146 (321)
-.++++....-+|++....+.+-..++|.=.++-.++.+++..++..+.+.+++||.+++..|.+.++++...+..
T Consensus 248 ~cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~ 323 (346)
T KOG4510|consen 248 HCGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWV 323 (346)
T ss_pred ccccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHH
Confidence 3455656667789998888999999999999999999999999999999999999999999999987766555543
No 97
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=93.30 E-value=0.1 Score=44.16 Aligned_cols=129 Identities=10% Similarity=0.096 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHHHHHH
Q 020772 157 GYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILILSLV 236 (321)
Q Consensus 157 G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 236 (321)
+++.++.-++.|+.--....|... +|.+-+.-+.+ +++.+....++.-. | ..+...+..-+.+|.
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG----~p~qQ~lGtT~-GALifaiiv~~~~~---------p-~~T~~~~iv~~isG~ 67 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGG----KPYQQTLGTTL-GALIFAIIVFLFVS---------P-ELTLTIFIVGFISGA 67 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCC----ChhHhhhhccH-HHHHHHHHHheeec---------C-ccchhhHHHHHHhhh
Confidence 567778888888887766655432 45554444443 44444443333211 1 113444556677888
Q ss_pred HHHHHHHHHHHHHhccchhHHHHHh-hhhHHHHHHhhhheeCccccchhhh-H---HHHHHHHHHHHHHH
Q 020772 237 MGIILNFTMFLCTIVNSALTTTIVG-VLKGVGSTTLGFVVLGGVQVRALNV-T---GLLINTAGGVWYSY 301 (321)
Q Consensus 237 ~~~~~~~~~~~~~~~~~a~~~s~~~-~~~~v~~~~~~~~~~~e~~~t~~~~-i---G~~lil~g~~~~~~ 301 (321)
+-...+...+++++..+.+.+..++ ..+-+-+.++|++.||| =-+..|. + ..++++.|..+-++
T Consensus 68 ~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~E-W~t~~~~IlG~iAliliviG~~lTs~ 136 (288)
T COG4975 68 FWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHE-WTTPTQIILGFIALILIVIGIYLTSK 136 (288)
T ss_pred HhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEec-cCcchhHHHHHHHHHHHHHhheEeee
Confidence 8888888888888887776655544 34778889999999998 5554443 3 34455556554433
No 98
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=92.29 E-value=2.8 Score=35.23 Aligned_cols=125 Identities=14% Similarity=0.076 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHHHhccCc-hHHHHHHHHHHHHHHHHHHHHcCcc-cc----CcCChhhhHHHHHHHHHHHHHHHHhHh
Q 020772 22 GVSSMAMVFINKAVIMQYAH-SMTLLTLQQLATALLIQAGRQMGYT-KS----KAIDLMTAKKLLPVSLFYNANVAFALA 95 (321)
Q Consensus 22 ~~~~~~~~~~nK~~~~~~~~-p~~i~~~r~~~~~l~l~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (321)
++.+...++..|....-.++ -..-.++....+.-++..+...-.. .. ..++.+....++.-|++-.+..++.-+
T Consensus 164 clssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svgiSy~saW 243 (309)
T COG5070 164 CLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVGISYCSAW 243 (309)
T ss_pred hHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhhhhhccce
Confidence 33444455555555432222 2346677777777666655443211 11 133444556777788888889999999
Q ss_pred hccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhh
Q 020772 96 SLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIA 146 (321)
Q Consensus 96 al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~ 146 (321)
+++-++...+++..++.-...++-+.+++.|+.+..++.++.+++...++.
T Consensus 244 cvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iY 294 (309)
T COG5070 244 CVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIY 294 (309)
T ss_pred eEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988888776655553
No 99
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=91.91 E-value=1.3 Score=33.03 Aligned_cols=50 Identities=14% Similarity=0.019 Sum_probs=37.6
Q ss_pred HHhccchhHHH-HHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHH
Q 020772 248 CTIVNSALTTT-IVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVW 298 (321)
Q Consensus 248 ~~~~~~a~~~s-~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~ 298 (321)
.+++.+-+.+. +.+.+.-+++++.++++.+| ..+...++|+++++.|+.+
T Consensus 61 ~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~-~~~~~~~~G~~Li~~Gv~L 111 (113)
T PF10639_consen 61 LLGSADLSLAVPIANSLAFVFTALTGWLLGEE-VISRRTWLGMALILAGVAL 111 (113)
T ss_pred HHhcCCceeeehHHhHHHHHHHHHHHHHhcCc-ccchhHHHHHHHHHcCeee
Confidence 34555443333 44688889999999888764 8899999999999999753
No 100
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=91.10 E-value=2.8 Score=37.94 Aligned_cols=133 Identities=14% Similarity=0.074 Sum_probs=89.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcc----CchHHHHHHHHHHHHHH----HHHHHHcCccccCcCCh-hhhHHHHHH
Q 020772 12 FLGLFAALSYGVSSMAMVFINKAVIMQY----AHSMTLLTLQQLATALL----IQAGRQMGYTKSKAIDL-MTAKKLLPV 82 (321)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~nK~~~~~~----~~p~~i~~~r~~~~~l~----l~~~~~~~~~~~~~~~~-~~~~~~~~~ 82 (321)
+.++++++.|++-.. +-|.-..+. +.|.++.+...+ ..++ +.++.+.+..+ .++|. .+...++..
T Consensus 250 llaL~sA~~YavY~v----llk~~~~~eg~rvdi~lffGfvGLf-nllllwP~l~iL~~~~~e~-F~lP~~~q~~~vv~~ 323 (416)
T KOG2765|consen 250 LLALLSALLYAVYTV----LLKRKIGDEGERVDIQLFFGFVGLF-NLLLLWPPLIILDFFGEER-FELPSSTQFSLVVFN 323 (416)
T ss_pred HHHHHHHHHHHHHHH----HHHhhcccccccccHHHHHHHHHHH-HHHHHhHHHHHHHHhccCc-ccCCCCceeEeeeHh
Confidence 445566666766333 445544433 234443333322 2222 22333444333 23333 244455555
Q ss_pred HHH-HHHHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcccc
Q 020772 83 SLF-YNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGD 150 (321)
Q Consensus 83 ~~~-~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~ 150 (321)
++. ....-+++..|.-.+++-..++-.+.+....++.+.++-++.+++..++|.+.++.|.+++...+
T Consensus 324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~ 392 (416)
T KOG2765|consen 324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISS 392 (416)
T ss_pred hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccc
Confidence 655 56899999999999999999999999999999999999999999999999999999999876543
No 101
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.44 E-value=11 Score=33.57 Aligned_cols=135 Identities=12% Similarity=-0.025 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHH-HHHHHHhhhHHHHHHHHHHHh-CCchhhhHhhhhccCchHHHHHHHH
Q 020772 156 SGYSMALTSVFFQTMYLVLVEKSGAEDGLSSV-EIMFYNSFLSLPFLVFLIIVT-GEFPGSLSLLFSKSNSFSFLVILIL 233 (321)
Q Consensus 156 ~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~ 233 (321)
.....++..+++...-.+..|.....++.+.. ..+.+|.+.+.+.+...-..- -++++. .+...+-|. .
T Consensus 12 ~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l------~~~~~kk~~---P 82 (314)
T KOG1444|consen 12 SPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPL------DLRTAKKWF---P 82 (314)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCc------ChHHHHHHc---c
Confidence 34566677777777777778887777764432 333488877777666654321 011111 011222222 2
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHH
Q 020772 234 SLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYS 300 (321)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~ 300 (321)
..++-.+.-+......++.+.....++....++.+.+....+++ .+++...+.....+++|...+.
T Consensus 83 ~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~-~~~~~~v~~Sv~~m~~~s~~~~ 148 (314)
T KOG1444|consen 83 VSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFG-KRPSNKVWASVFAMIIGSVAAA 148 (314)
T ss_pred HHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcC-cCchhhHHHHHHHHHHHHHhhc
Confidence 22223333345567789999999999999999999999999999 4999999999999999987653
No 102
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=86.87 E-value=0.75 Score=38.78 Aligned_cols=72 Identities=6% Similarity=-0.023 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhc
Q 020772 76 AKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAA 147 (321)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~ 147 (321)
+..+..+++..++.+.+-+.-..+-++-.-+++..+.-+|+.+.+.++++..++.+||++.++++.|...-.
T Consensus 241 ~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D~ 312 (337)
T KOG1580|consen 241 FWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTADV 312 (337)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHh
Confidence 456667777777777777776777777777778888899999999999999999999999999999887743
No 103
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=85.83 E-value=8.5 Score=33.46 Aligned_cols=108 Identities=14% Similarity=0.017 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHcCccccC------cCChhhhHHHHHHHHHHHHHHHHhHhhccCccchHHHHHHHhHHHHHHH
Q 020772 45 LLTLQQLATALLIQAGRQMGYTKSK------AIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLV 118 (321)
Q Consensus 45 i~~~r~~~~~l~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l 118 (321)
+.++.+.++.+.++........-.+ +-+++.....+..+....+.+.+...-.+.-.+..+..+....--.+.+
T Consensus 223 mvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~ 302 (367)
T KOG1582|consen 223 MVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTIL 302 (367)
T ss_pred EEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHH
Confidence 6666666666665554433221211 2234444555544444322222222223444667777777778888999
Q ss_pred HHHHhcCCcCCchhhhhHHHHhhhhhhhcccccc
Q 020772 119 AGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFS 152 (321)
Q Consensus 119 ~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~~~ 152 (321)
++++++.++++.....+..+++.|+.+-..++.+
T Consensus 303 lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~n 336 (367)
T KOG1582|consen 303 LSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRN 336 (367)
T ss_pred HHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCC
Confidence 9999999999999999999999999997776633
No 104
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=85.55 E-value=0.39 Score=39.31 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHH
Q 020772 240 ILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYA 302 (321)
Q Consensus 240 ~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~ 302 (321)
+.||.+..+.++.+|+.++-+..-+..+..++++++++| ++....++..++.+.|+++.++.
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D-~~~~~kIlaailAI~GiVmiay~ 126 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGD-RFMGFKILAAILAIGGIVMIAYA 126 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhcc-chhhhhHHHHHHHhCcEEEEEec
Confidence 456777788999999999999999999999999999998 99999999999999888776543
No 105
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.32 E-value=0.14 Score=45.13 Aligned_cols=119 Identities=18% Similarity=0.194 Sum_probs=81.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhccCchHHHHHHH
Q 020772 153 FDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKSNSFSFLVILI 232 (321)
Q Consensus 153 ~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 232 (321)
.+..|.++++.|.++.+...++.||-.++.+. ..-. .++.. ++...++.+|..+
T Consensus 18 d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~-----~~~r--------------a~~gg------~~yl~~~~Ww~G~- 71 (335)
T KOG2922|consen 18 DNIIGLVLAISSSIFIGSSFILKKKGLKRAGA-----SGLR--------------AGEGG------YGYLKEPLWWAGM- 71 (335)
T ss_pred CceeeeeehhhccEEEeeehhhhHHHHHHHhh-----hccc--------------ccCCC------cchhhhHHHHHHH-
Confidence 34679999999999988888888876554311 0000 01111 1122233334333
Q ss_pred HHHHHHHHHH-HHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHH
Q 020772 233 LSLVMGIILN-FTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYA 302 (321)
Q Consensus 233 ~~~~~~~~~~-~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~ 302 (321)
+..++. ...|.+....+++-++.++.+.-+.+.+++..+++| +++....+|+++.+.|....-.+
T Consensus 72 ----ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~E-kl~~~g~lGc~l~v~Gst~iV~h 137 (335)
T KOG2922|consen 72 ----LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKE-KLNLLGILGCVLCVVGSTTIVIH 137 (335)
T ss_pred ----HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHH-HHHHhhhhheeEEecccEEEEEe
Confidence 233333 445556777788889999999999999999999997 99999999999999998765444
No 106
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=81.90 E-value=3.2 Score=36.12 Aligned_cols=61 Identities=15% Similarity=0.061 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHH
Q 020772 239 IILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYS 300 (321)
Q Consensus 239 ~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~ 300 (321)
.......+.+...++|+...++.....+++-+++..+++. +++..||.|+..+.+|.+...
T Consensus 97 i~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~-ti~~~qWl~i~fv~lGlviVg 157 (372)
T KOG3912|consen 97 IAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNR-TITGRQWLGILFVSLGLVIVG 157 (372)
T ss_pred HhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhc-ccchhhHHHHHHHHhhhheee
Confidence 3333445566788899999999999999999999999996 999999999999999987654
No 107
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=71.59 E-value=1.3 Score=38.37 Aligned_cols=99 Identities=9% Similarity=0.022 Sum_probs=0.0
Q ss_pred ccCccchHHHHHHHhHHHHHHHH-HHHhcCCcC-CchhhhhHHHHhhhhhhhccccc--ccchhHHHHHHHHHHHHHHHH
Q 020772 97 LKGVNIPMYIAIKRLTPLAVLVA-GFFSGKGKP-TTQVTLSVLLTATGCVIAALGDF--SFDLSGYSMALTSVFFQTMYL 172 (321)
Q Consensus 97 l~~~~~~~~~~l~~~~pv~~~l~-~~l~~ke~~-~~~~~~ai~~~~~Gv~l~~~~~~--~~~~~G~~~~l~s~~~~a~~~ 172 (321)
++-.+-+...++.+...+.+.++ -.+++|+|+ -+.-.+.+++.++-..+...-.. +.-..|+++.++.+...-.-.
T Consensus 44 msd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l~~lLaL~vW 123 (381)
T PF05297_consen 44 MSDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFLCCLLALGVW 123 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HhccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666655554443 334445554 45556666666665555433221 122457665554443221111
Q ss_pred HHHHhhcCCCCCCHHHHHHHHhhh
Q 020772 173 VLVEKSGAEDGLSSVEIMFYNSFL 196 (321)
Q Consensus 173 v~~k~~~~~~~~~~~~~~~~~~~~ 196 (321)
.+ -.++++++.+.++++.+...+
T Consensus 124 ~Y-m~lLr~~GAs~WtiLaFcLAF 146 (381)
T PF05297_consen 124 FY-MWLLRELGASFWTILAFCLAF 146 (381)
T ss_dssp ------------------------
T ss_pred HH-HHHHHHhhhHHHHHHHHHHHH
Confidence 12 224556667888887765433
No 108
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=65.56 E-value=18 Score=31.32 Aligned_cols=133 Identities=17% Similarity=0.064 Sum_probs=81.6
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHcCccccCcCChh-hhHHHHHHHHHHH
Q 020772 9 ISPFLGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLM-TAKKLLPVSLFYN 87 (321)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~nK~~~~~~~~p~~i~~~r~~~~~l~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 87 (321)
++-.+.++.+.+|+++++.--++.| +-+ ...+...-.++++++-.+-....+.+...+.|+ .....+...+++.
T Consensus 166 ~GD~lvi~GATlYaVSNv~EEflvk----n~d-~~elm~~lgLfGaIIsaIQ~i~~~~~~~tl~w~~~i~~yl~f~L~MF 240 (336)
T KOG2766|consen 166 KGDFLVIAGATLYAVSNVSEEFLVK----NAD-RVELMGFLGLFGAIISAIQFIFERHHVSTLHWDSAIFLYLRFALTMF 240 (336)
T ss_pred cCcEEEEecceeeeeccccHHHHHh----cCc-HHHHHHHHHHHHHHHHHHHHhhhccceeeEeehHHHHHHHHHHHHHH
Confidence 3445567788889998885544444 322 233444444556666555444444444445553 2233333344433
Q ss_pred HHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcc
Q 020772 88 ANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 148 (321)
Q Consensus 88 ~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~ 148 (321)
+-..+.-.-++..++..+.+-.-++-.|..+. ..++.+++|.-.++-.....|.++.+-
T Consensus 241 llYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~ 299 (336)
T KOG2766|consen 241 LLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYST 299 (336)
T ss_pred HHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeec
Confidence 33333333466677777777777888888877 566777999999999999999998754
No 109
>PRK02237 hypothetical protein; Provisional
Probab=61.39 E-value=64 Score=23.85 Aligned_cols=38 Identities=8% Similarity=0.039 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcc
Q 020772 111 LTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 148 (321)
Q Consensus 111 ~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~ 148 (321)
...+...+-.+.+-|+|+++.++.+..++++|+.++.+
T Consensus 68 vyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 68 VYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred HHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 34455556788888999999999999999999988754
No 110
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=58.06 E-value=73 Score=23.44 Aligned_cols=60 Identities=10% Similarity=0.014 Sum_probs=37.7
Q ss_pred HHHHHHHhHhhccCccchHHHHHHH-hHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhh
Q 020772 86 YNANVAFALASLKGVNIPMYIAIKR-LTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVI 145 (321)
Q Consensus 86 ~~~~~~~~~~al~~~~~~~~~~l~~-~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l 145 (321)
|+++.-..-.+.+.-+.+.-.+++= .+...-+.++.+++||++++....|-...+.++.+
T Consensus 45 Y~l~VPANRiG~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~f 105 (108)
T PF04342_consen 45 YCLQVPANRIGYQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYF 105 (108)
T ss_pred HHHhCcchhhhccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhe
Confidence 5555555555555544433333322 23334456788999999999999998887777654
No 111
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=56.95 E-value=17 Score=26.73 Aligned_cols=38 Identities=16% Similarity=0.214 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcc
Q 020772 111 LTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 148 (321)
Q Consensus 111 ~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~ 148 (321)
...+...+-.+.+-|+|+++.++.+..++++|+.++.+
T Consensus 66 vfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~ 103 (107)
T PF02694_consen 66 VFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILF 103 (107)
T ss_pred hHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEe
Confidence 34555666778888999999999999999999998754
No 112
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=56.85 E-value=46 Score=29.16 Aligned_cols=44 Identities=16% Similarity=0.045 Sum_probs=37.1
Q ss_pred HHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhc
Q 020772 104 MYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAA 147 (321)
Q Consensus 104 ~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~ 147 (321)
+.++...+.=.+..+++.+.++.++++..|+|..+++.|.++.+
T Consensus 270 TVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 270 TVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred EEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 33445566678888999999999999999999999999999854
No 113
>COG1971 Predicted membrane protein [Function unknown]
Probab=56.70 E-value=18 Score=29.70 Aligned_cols=37 Identities=11% Similarity=0.013 Sum_probs=25.3
Q ss_pred hhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHH
Q 020772 254 ALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLI 291 (321)
Q Consensus 254 a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~l 291 (321)
+...+....+.|+.+...+.++-+- .-.+-+|+|.++
T Consensus 40 a~~fG~f~~i~pliG~~~g~~~s~~-i~~~~~wigf~l 76 (190)
T COG1971 40 ALIFGVFQAIMPLIGWFIGKFLSTF-IAEWAHWIGFVL 76 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 3455566667777777777776653 567888887766
No 114
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=55.58 E-value=23 Score=26.02 Aligned_cols=68 Identities=19% Similarity=0.186 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhccCccchHHH-HHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhh
Q 020772 77 KKLLPVSLFYNANVAFALASLKGVNIPMYI-AIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVI 145 (321)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~al~~~~~~~~~-~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l 145 (321)
.+++|+.+ +-....+++.-+++.|.+.+. +-.+++-.++.+++..+..|...++.+++..+.++|..+
T Consensus 54 ~Y~iPFll-NqcgSaly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~L 122 (125)
T KOG4831|consen 54 EYLIPFLL-NQCGSALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWL 122 (125)
T ss_pred HHHHHHHH-HHhhHHHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhh
Confidence 45555443 334455666778888777665 556778889999998877677777778999999998865
No 115
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=55.48 E-value=12 Score=27.40 Aligned_cols=28 Identities=11% Similarity=0.056 Sum_probs=23.4
Q ss_pred HHhhhheeCccccchhhhHHHHHHHHHHH
Q 020772 269 TTLGFVVLGGVQVRALNVTGLLINTAGGV 297 (321)
Q Consensus 269 ~~~~~~~~~e~~~t~~~~iG~~lil~g~~ 297 (321)
...++++++| ++++.+..|..+++.|+.
T Consensus 77 ~~Fsv~~l~E-~l~~n~l~af~~i~~av~ 104 (108)
T PF04342_consen 77 APFSVFYLGE-PLKWNYLWAFLCILGAVY 104 (108)
T ss_pred HHHHHHHhCC-CccHHHHHHHHHHHHhhh
Confidence 4567888997 999999999999877654
No 116
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=55.20 E-value=21 Score=21.47 Aligned_cols=17 Identities=12% Similarity=-0.160 Sum_probs=8.5
Q ss_pred chhhhHHHHHHHHHHHH
Q 020772 282 RALNVTGLLINTAGGVW 298 (321)
Q Consensus 282 t~~~~iG~~lil~g~~~ 298 (321)
+|..++=.+++++|++.
T Consensus 3 ~wlt~iFsvvIil~If~ 19 (49)
T PF11044_consen 3 TWLTTIFSVVIILGIFA 19 (49)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 44555544555555543
No 117
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=52.70 E-value=1.8e+02 Score=26.39 Aligned_cols=284 Identities=11% Similarity=0.014 Sum_probs=143.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhccCchHH-HHHHHHHHHHHHHHHHHH-cCccc----cCcCChhhhHHHHHHHHH
Q 020772 12 FLGLFAALSYGVSSMAMVFINKAVIMQYAHSMT-LLTLQQLATALLIQAGRQ-MGYTK----SKAIDLMTAKKLLPVSLF 85 (321)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~nK~~~~~~~~p~~-i~~~r~~~~~l~l~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~ 85 (321)
+.+++...+-+.++.+..+=-|.+= ++. +. .=..|.+++.++.-.+.. ....+ .+..+.+.+......|++
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkvk-~Ws--WEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~l 82 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKVK-GWS--WESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGVL 82 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhcC-Ccc--HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHHH
Confidence 4555555555555444433333222 222 33 223366666665544322 11111 123445566777788888
Q ss_pred HHHHHHHhHhhccCccchHHH-HHHHhHHHHHHHHHHHhcC-------CcCCchhhhhHHHHhhhhhhhccc----c---
Q 020772 86 YNANVAFALASLKGVNIPMYI-AIKRLTPLAVLVAGFFSGK-------GKPTTQVTLSVLLTATGCVIAALG----D--- 150 (321)
Q Consensus 86 ~~~~~~~~~~al~~~~~~~~~-~l~~~~pv~~~l~~~l~~k-------e~~~~~~~~ai~~~~~Gv~l~~~~----~--- 150 (321)
.......+=.+++|+.++..+ +...++-++-+++-.++.+ ++-....+++++++++|+.+.... |
T Consensus 83 WGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~ 162 (344)
T PF06379_consen 83 WGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKEL 162 (344)
T ss_pred HhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhh
Confidence 888888888889998777654 4445555555555555433 222346679999999999985321 1
Q ss_pred ----cccc-hhHHHHHHHHHHHHHHHHHHHHhhcC------CCCCCHHHH----HHHHhhhHHHHHHHHHHHh---CCch
Q 020772 151 ----FSFD-LSGYSMALTSVFFQTMYLVLVEKSGA------EDGLSSVEI----MFYNSFLSLPFLVFLIIVT---GEFP 212 (321)
Q Consensus 151 ----~~~~-~~G~~~~l~s~~~~a~~~v~~k~~~~------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~~ 212 (321)
.+++ ..|++.+++|.+..|..+.-.+.-.+ ..+.+|.-. ......-+.+.-....+.. ....
T Consensus 163 ~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k~~ 242 (344)
T PF06379_consen 163 GEEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCLILLAKNKNW 242 (344)
T ss_pred ccchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhhcCCC
Confidence 1222 47999999999999988876543211 111122110 0111111222222222221 0000
Q ss_pred hhhHhhhhccCc--hHHHHHHHHHHHHHHHHHHHHHHHHhcc----chhHHHHHhhhhHHHHHHhhhheeCc-----ccc
Q 020772 213 GSLSLLFSKSNS--FSFLVILILSLVMGIILNFTMFLCTIVN----SALTTTIVGVLKGVGSTTLGFVVLGG-----VQV 281 (321)
Q Consensus 213 ~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~----~a~~~s~~~~~~~v~~~~~~~~~~~e-----~~~ 281 (321)
+. +.++....+ .+......+.|+.-+...+.+-..-.+. ......+...+..+++-+.|... +| ++.
T Consensus 243 s~-~~d~~~~~~~~~~N~~~~aLaG~lWy~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~l-kEWKg~s~kt 320 (344)
T PF06379_consen 243 SW-KGDYSVAKPPLLKNYLFCALAGVLWYSQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLIL-KEWKGASKKT 320 (344)
T ss_pred cc-ccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHH-HHhccCCccc
Confidence 00 000110001 1223333334443333332222333333 35566777777888888888764 45 122
Q ss_pred chhhhHHHHHHHHHHHHHH
Q 020772 282 RALNVTGLLINTAGGVWYS 300 (321)
Q Consensus 282 t~~~~iG~~lil~g~~~~~ 300 (321)
-..-++|..+++.++.+..
T Consensus 321 ~~vl~~G~~vlI~s~~ivG 339 (344)
T PF06379_consen 321 IRVLVLGIAVLILSVVIVG 339 (344)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 2445778888777766543
No 118
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=50.95 E-value=2.9e+02 Score=28.28 Aligned_cols=44 Identities=11% Similarity=0.098 Sum_probs=32.4
Q ss_pred hHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhh
Q 020772 103 PMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIA 146 (321)
Q Consensus 103 ~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~ 146 (321)
+.+.++..+.|+-.+.++.....+|.+...+.+.+..+.|.+..
T Consensus 11 gRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 11 GRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred hHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 45567788899999999988877776555666766667776654
No 119
>PRK02237 hypothetical protein; Provisional
Probab=50.14 E-value=24 Score=26.02 Aligned_cols=45 Identities=24% Similarity=0.138 Sum_probs=36.6
Q ss_pred HHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHH
Q 020772 257 TTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYA 302 (321)
Q Consensus 257 ~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~ 302 (321)
.+-.+-+-.+.+.+.++.+-++ +++...++|..+.++|..+..+.
T Consensus 62 YAAYGGvyI~~Sl~W~w~vdg~-~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 62 YAAYGGVYVAGSLLWLWVVDGV-RPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred HHHhhhHHHHHHHHHHHHhcCc-CCChhHHHhHHHHHHhHHHheec
Confidence 3455566677888999999996 99999999999999998765443
No 120
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=49.12 E-value=2.4e+02 Score=26.75 Aligned_cols=23 Identities=17% Similarity=0.473 Sum_probs=17.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhh
Q 020772 284 LNVTGLLINTAGGVWYSYAKYQQ 306 (321)
Q Consensus 284 ~~~iG~~lil~g~~~~~~~~~~~ 306 (321)
....|.++.++|..+|...++++
T Consensus 417 ~~~~~~~~~~~g~~~y~~~~~~~ 439 (473)
T TIGR00905 417 YLLLGFILYAPGIIFYGRARKER 439 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 45568888899988888766544
No 121
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=48.26 E-value=6.1 Score=34.38 Aligned_cols=110 Identities=15% Similarity=0.156 Sum_probs=61.0
Q ss_pred CHHHHHHHHhhhHHHHHHHHHHHhCCchhhhHhhhhcc-CchHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhhh
Q 020772 185 SSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKS-NSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVL 263 (321)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~ 263 (321)
.|.-++.++.+....++..+.-..-.-+...+ ++.. -+.....-+.-..+.-...--+...|.++.+....-+-..+
T Consensus 60 ~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ft--fp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~yVgVaFYyvgRsL 137 (347)
T KOG1442|consen 60 APLFITWYQCLVTTSICLVLSSLSVKYPGLFT--FPSLQLDLATARQVLPLSVVFILMISFNNLCLKYVGVAFYYVGRSL 137 (347)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhccceec--cCcccccHHHHHhhcchhheeeeehhccceehhhcceEEEEeccch
Confidence 45666777777666666554432211111111 1111 11111222222223333333345567788887777777778
Q ss_pred hHHHHHHhhhheeCccccchhhhHHHHHHHHHHH
Q 020772 264 KGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGV 297 (321)
Q Consensus 264 ~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~ 297 (321)
..++++++.++++++ +=+..-..++.+++.|..
T Consensus 138 ttvFtVlLtyvllkq-kTs~~~~~~C~lIi~GF~ 170 (347)
T KOG1442|consen 138 TTVFTVLLTYVLLKQ-KTSFFALGCCLLIILGFG 170 (347)
T ss_pred hhhHHHHhHHhhccc-ccccccceeehhheehhe
Confidence 888999999999986 777777777777666643
No 122
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.78 E-value=1.1e+02 Score=22.26 Aligned_cols=37 Identities=11% Similarity=0.079 Sum_probs=27.8
Q ss_pred hhhhHHHH----HHhhhheeCccccchhhhHHHHHHHHHHHH
Q 020772 261 GVLKGVGS----TTLGFVVLGGVQVRALNVTGLLINTAGGVW 298 (321)
Q Consensus 261 ~~~~~v~~----~~~~~~~~~e~~~t~~~~iG~~lil~g~~~ 298 (321)
-.++.+++ +..+++.++| ++.+.++.|..++..|+..
T Consensus 72 K~mQEVItL~iFv~Fsvfyl~e-pl~~~~l~a~~~i~gav~f 112 (116)
T COG3169 72 KTMQEVITLAIFVPFSVFYLKE-PLRWNYLWAFLLILGAVYF 112 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHHHH
Confidence 34455555 4468889997 9999999999997776654
No 123
>MTH00057 ND6 NADH dehydrogenase subunit 6; Provisional
Probab=47.65 E-value=1.6e+02 Score=24.20 Aligned_cols=48 Identities=13% Similarity=0.295 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHh
Q 020772 157 GYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVT 208 (321)
Q Consensus 157 G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (321)
...+.+.+-++-|......+- +. ....++..|.+.+..+++...++..
T Consensus 28 s~l~Li~~f~~~A~l~~ll~a---~F-la~~qIiVYvGAI~VLflFvIMll~ 75 (186)
T MTH00057 28 SVLWLIVAFTSASALFILLEV---EF-IALIFLIVYVGAIAILFLFVIMMLN 75 (186)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---HH-HHHHHHHHHHhHHHHHHHHHHHHcC
Confidence 334444444444444433322 11 3567888999988888888877764
No 124
>PF07444 Ycf66_N: Ycf66 protein N-terminus; InterPro: IPR010004 This entry represents Ycf66, a protein that is restricted to the chloroplasts of simple plants and algae. It is also found in the cyanobacteria. The function is unknown. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=47.59 E-value=27 Score=24.59 Aligned_cols=27 Identities=11% Similarity=0.214 Sum_probs=22.1
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhh
Q 020772 280 QVRALNVTGLLINTAGGVWYSYAKYQQ 306 (321)
Q Consensus 280 ~~t~~~~iG~~lil~g~~~~~~~~~~~ 306 (321)
..++..++|+++++.|..+|..+..++
T Consensus 4 ~~~~~~iLgi~l~~~~~~Ly~lr~~~P 30 (84)
T PF07444_consen 4 GFGPSYILGIILILGGLALYFLRFFRP 30 (84)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHCc
Confidence 578999999999999999997655433
No 125
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=47.29 E-value=1.6e+02 Score=24.34 Aligned_cols=49 Identities=16% Similarity=0.247 Sum_probs=31.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHh
Q 020772 156 SGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVT 208 (321)
Q Consensus 156 ~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (321)
...++.+.+-++-|....+.+- +. ....++..|.+.+..+++....+..
T Consensus 30 ~s~l~Li~~f~~vA~l~~ll~a---~F-la~~qIiVYvGAI~VLflFvIMll~ 78 (198)
T PRK06638 30 HSALFLILTFLSIAGLYFLLGA---EF-LGVVQIIVYVGAVMVLFLFVVMMLD 78 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHhch---HH-HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3555556666666665554432 21 3667899999988888877777764
No 126
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=46.97 E-value=25 Score=25.89 Aligned_cols=45 Identities=22% Similarity=0.152 Sum_probs=36.6
Q ss_pred HHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHH
Q 020772 257 TTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYA 302 (321)
Q Consensus 257 ~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~ 302 (321)
.+-.+-+-.+.+.+.++.+-++ +++...++|..+.+.|..+..+.
T Consensus 60 YAAYGGvfI~~Sl~W~w~vdg~-~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 60 YAAYGGVFIVASLLWGWLVDGV-RPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred HHHhhhhHHHHHHHHHhhhcCc-CCChHHHHhHHHHHHhHHheEec
Confidence 3445556778889999999996 99999999999999998775443
No 127
>PRK12437 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=44.58 E-value=22 Score=31.14 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=18.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHHH
Q 020772 281 VRALNVTGLLINTAGGVWYSYAK 303 (321)
Q Consensus 281 ~t~~~~iG~~lil~g~~~~~~~~ 303 (321)
+|..|+++..+++.|+.+..+++
T Consensus 235 ls~~Q~~sl~~i~~g~~~~~~~~ 257 (269)
T PRK12437 235 LRIAQVISIPLIIIGIILIIYRR 257 (269)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999987765444
No 128
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=44.47 E-value=1.2e+02 Score=21.82 Aligned_cols=59 Identities=12% Similarity=0.071 Sum_probs=33.7
Q ss_pred HHHHhccchhHHHHHhhhhHHHHHHhhhh---eeCccccchhhhHHHHHHHHHHHHHHHHHH
Q 020772 246 FLCTIVNSALTTTIVGVLKGVGSTTLGFV---VLGGVQVRALNVTGLLINTAGGVWYSYAKY 304 (321)
Q Consensus 246 ~~~~~~~~a~~~s~~~~~~~v~~~~~~~~---~~~e~~~t~~~~iG~~lil~g~~~~~~~~~ 304 (321)
..++|++.-...-.+-.+.-++++++|.+ +.++..+-...|.|.+.-+.+..++....+
T Consensus 22 Vq~IkkT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~ 83 (93)
T PF06946_consen 22 VQAIKKTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTN 83 (93)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHh
Confidence 34566665333334444455566666554 333323444568888887888777765544
No 129
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=43.36 E-value=54 Score=25.63 Aligned_cols=27 Identities=15% Similarity=0.112 Sum_probs=17.7
Q ss_pred hccchhHHHHHhhhhHHHHHHhhhhee
Q 020772 250 IVNSALTTTIVGVLKGVGSTTLGFVVL 276 (321)
Q Consensus 250 ~~~~a~~~s~~~~~~~v~~~~~~~~~~ 276 (321)
..-+....+.+-|+-|.++.+++.+++
T Consensus 70 ~EkslL~sA~LvYi~PL~~l~v~~~La 96 (150)
T COG3086 70 EEKSLLKSALLVYIFPLVGLFLGAILA 96 (150)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566667777777777776666654
No 130
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=42.97 E-value=37 Score=22.59 Aligned_cols=24 Identities=8% Similarity=0.149 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhh
Q 020772 284 LNVTGLLINTAGGVWYSYAKYQQK 307 (321)
Q Consensus 284 ~~~iG~~lil~g~~~~~~~~~~~~ 307 (321)
.-++++..+++|.++|...++++.
T Consensus 5 ~iLi~ICVaii~lIlY~iYnr~~~ 28 (68)
T PF05961_consen 5 FILIIICVAIIGLILYGIYNRKKT 28 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc
Confidence 346788888899999987765443
No 131
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=41.58 E-value=34 Score=25.06 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhccc
Q 020772 113 PLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALG 149 (321)
Q Consensus 113 pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~ 149 (321)
.+...+-.+..-|.++++.++.+..++++|+.++.+.
T Consensus 69 I~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 69 IAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred HHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 3444556667779999999999999999998887553
No 132
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=40.26 E-value=24 Score=31.25 Aligned_cols=132 Identities=12% Similarity=0.091 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHH-hCCc-------hhhhHhhhhccCchHHHHHHHH
Q 020772 162 LTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIV-TGEF-------PGSLSLLFSKSNSFSFLVILIL 233 (321)
Q Consensus 162 l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~~~~~~~i~~ 233 (321)
+++.+|++-.-..+|-.-++.+. .+..++=..++.++...+..+ .|.. ++...+. . ..++......+.
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~--~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL-~-Q~n~~sv~~A~a 77 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRL--PQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQL-S-QANWPSVLFAMA 77 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCc--cceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHH-h-cCChHHHHHHHH
Confidence 46778888887777665443321 234555555555544444322 2222 2222211 1 223444555667
Q ss_pred HHHHHHHHHHHHHHHHhccchhHHHHH-hhhhHHHHHHhhhheeCccccc--hhhhHHHHHHHHHHHHH
Q 020772 234 SLVMGIILNFTMFLCTIVNSALTTTIV-GVLKGVGSTTLGFVVLGGVQVR--ALNVTGLLINTAGGVWY 299 (321)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~a~~~s~~-~~~~~v~~~~~~~~~~~e~~~t--~~~~iG~~lil~g~~~~ 299 (321)
.|++-.+.|.+..+++...+-...-.+ ..+.-+.++.+.++. ++ +.. ..-+.|..++++++.+-
T Consensus 78 GGvvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfl-d~-~~n~a~iLF~GV~cf~iAI~lg 144 (336)
T PF07168_consen 78 GGVVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFL-DP-KINRAEILFPGVACFLIAIILG 144 (336)
T ss_pred hhHhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeec-cC-CCCCceEEEccHHHHHHHHHHH
Confidence 777777777666555554443222111 122334455555543 22 443 35566888877777654
No 133
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.97 E-value=52 Score=23.78 Aligned_cols=30 Identities=13% Similarity=-0.017 Sum_probs=25.4
Q ss_pred HHHHHHhcCCcCCchhhhhHHHHhhhhhhh
Q 020772 117 LVAGFFSGKGKPTTQVTLSVLLTATGCVIA 146 (321)
Q Consensus 117 ~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~ 146 (321)
..++.+.+||++++..+.+......|+.++
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fi 113 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFI 113 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHh
Confidence 457889999999999999988888877664
No 134
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=38.75 E-value=3.5e+02 Score=25.62 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=17.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHh
Q 020772 283 ALNVTGLLINTAGGVWYSYAKYQ 305 (321)
Q Consensus 283 ~~~~iG~~lil~g~~~~~~~~~~ 305 (321)
....+|.++.+.|...|.+.+++
T Consensus 411 ~~~~~~~~~~~~g~~~y~~~~~~ 433 (468)
T TIGR03810 411 KYLLLSAILYAPGIYFYARARKE 433 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677888889999999765443
No 135
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=35.97 E-value=29 Score=22.50 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=17.9
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHH
Q 020772 280 QVRALNVTGLLINTAGGVWYSYAKY 304 (321)
Q Consensus 280 ~~t~~~~iG~~lil~g~~~~~~~~~ 304 (321)
+.+...++|..++-.+...|+....
T Consensus 15 R~tV~~Lig~T~~~g~~~~~~~y~~ 39 (59)
T PF14880_consen 15 RTTVLGLIGFTVYGGGLTVYTVYSY 39 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888887777777765543
No 136
>PRK07668 hypothetical protein; Validated
Probab=35.74 E-value=3e+02 Score=23.94 Aligned_cols=9 Identities=11% Similarity=0.283 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 020772 77 KKLLPVSLF 85 (321)
Q Consensus 77 ~~~~~~~~~ 85 (321)
..++..++.
T Consensus 177 qs~il~~~~ 185 (254)
T PRK07668 177 QSYILAGLI 185 (254)
T ss_pred HHHHHHHHH
Confidence 344443433
No 137
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=34.83 E-value=31 Score=19.17 Aligned_cols=15 Identities=27% Similarity=0.202 Sum_probs=9.0
Q ss_pred ccchhhhHHHHHHHH
Q 020772 280 QVRALNVTGLLINTA 294 (321)
Q Consensus 280 ~~t~~~~iG~~lil~ 294 (321)
.-+...++|..++..
T Consensus 9 ~~~~~~~~G~~l~~~ 23 (34)
T TIGR01167 9 GNSLLLLLGLLLLGL 23 (34)
T ss_pred ccHHHHHHHHHHHHH
Confidence 456677777744333
No 138
>PRK11469 hypothetical protein; Provisional
Probab=34.53 E-value=68 Score=26.38 Aligned_cols=47 Identities=9% Similarity=-0.115 Sum_probs=29.7
Q ss_pred hhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHH
Q 020772 254 ALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYA 302 (321)
Q Consensus 254 a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~ 302 (321)
+...+.++.+-|..+...|..+-+ ......+|+|..+ ++....+...
T Consensus 40 ~l~~g~~q~~m~~~g~~~G~~l~~-~i~~~~~~i~~~l-L~~lG~~mi~ 86 (188)
T PRK11469 40 GLIFGAVETLTPLIGWGMGMLASR-FVLEWNHWIAFVL-LIFLGGRMII 86 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHHHHHHHH
Confidence 455566677788888888877654 2455667888876 4444444433
No 139
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=34.48 E-value=3.9e+02 Score=24.99 Aligned_cols=133 Identities=14% Similarity=0.019 Sum_probs=63.0
Q ss_pred cCChhhhHHHHHHHHHHHHHHHHhHhhccCccchH--HHH-----HHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhh
Q 020772 70 AIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPM--YIA-----IKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATG 142 (321)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~--~~~-----l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~G 142 (321)
+.++++......-+.+.-+.++..|.+-....-.. ... ..+..-+--++.+++. ++|++..-.++- .+.|
T Consensus 191 ~~~pHNl~~~~lGa~lLWfGWfGFN~GSal~~~~~a~~a~~nT~lAaa~g~l~w~~~e~~~-~~Kp~~lg~~sG--~vAG 267 (409)
T COG0004 191 AIPPHNLPLVVLGAALLWFGWFGFNAGSALAANGVAALAFVNTNLAAAAGALGWMLIEWLR-NGKPSLLGAASG--AVAG 267 (409)
T ss_pred CCCCCchhHHHHHHHHHHHHHccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCchhhhhhH--HHhH
Confidence 34444444444444444566666666543322111 122 2222333444555555 666665443322 2233
Q ss_pred hhhhcccccccchhH-HHHHHHH-HHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHH
Q 020772 143 CVIAALGDFSFDLSG-YSMALTS-VFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLI 205 (321)
Q Consensus 143 v~l~~~~~~~~~~~G-~~~~l~s-~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (321)
.+-++....-.++.| ++..+++ .+|+-....+.||..-|...+.+..-......+.+....+.
T Consensus 268 LVaITpaag~V~p~~A~iiGii~g~i~~~a~~~lk~~l~~DD~ld~f~vHGvgGi~G~i~~GiFa 332 (409)
T COG0004 268 LVAITPAAGFVSPWGALIIGLIAGVICYFAVKLLKKKLGVDDALDVFGVHGVGGIVGAILTGIFA 332 (409)
T ss_pred HHhcCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccceeccchhhHHHHHHHHHhc
Confidence 333333222233333 3444444 45676666666655434446666666666666666665543
No 140
>PRK10666 ammonium transporter; Provisional
Probab=33.41 E-value=4.2e+02 Score=25.02 Aligned_cols=81 Identities=9% Similarity=0.009 Sum_probs=38.9
Q ss_pred hcCCcCCchhhhhHHHHhhhhhhhcc-cccccchhHHHHHHHHHHHHHHHHHHHHh-hcCCCCCCHHHHHHHHhhhHHHH
Q 020772 123 SGKGKPTTQVTLSVLLTATGCVIAAL-GDFSFDLSGYSMALTSVFFQTMYLVLVEK-SGAEDGLSSVEIMFYNSFLSLPF 200 (321)
Q Consensus 123 ~~ke~~~~~~~~ai~~~~~Gv~l~~~-~~~~~~~~G~~~~l~s~~~~a~~~v~~k~-~~~~~~~~~~~~~~~~~~~~~~~ 200 (321)
+.++|++......-++ .|.+-++. .+.-..+...+.+.++++..-......|+ ..=|...+...+-.....++.+.
T Consensus 273 ~~~gk~~~~~~~nG~L--aGLVaITa~a~~v~p~~A~iiG~vag~v~~~~~~~l~~~~~iDD~~~a~~vHgv~Gi~G~l~ 350 (428)
T PRK10666 273 ALRGKPSLLGACSGAI--AGLVGVTPACGYVGVGGALIIGVVAGLAGLWGVTMLKRWLRVDDPCDVFGVHGVCGIVGCIL 350 (428)
T ss_pred HHhCCCCHHHHHHHHh--hhhhhcccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCccHhhhHhHHHHHHH
Confidence 3455666555433322 33333322 22222334556666666544333323343 32233356666666667777666
Q ss_pred HHHHH
Q 020772 201 LVFLI 205 (321)
Q Consensus 201 ~~~~~ 205 (321)
...+.
T Consensus 351 ~glfa 355 (428)
T PRK10666 351 TGIFA 355 (428)
T ss_pred HHHhh
Confidence 66654
No 141
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=31.74 E-value=88 Score=23.96 Aligned_cols=25 Identities=20% Similarity=0.088 Sum_probs=17.1
Q ss_pred cchhHHHHHhhhhHHHHHHhhhhee
Q 020772 252 NSALTTTIVGVLKGVGSTTLGFVVL 276 (321)
Q Consensus 252 ~~a~~~s~~~~~~~v~~~~~~~~~~ 276 (321)
.+....+++.|+-|+...+++.++-
T Consensus 65 ~~~~~aa~l~Y~lPll~li~g~~l~ 89 (135)
T PF04246_consen 65 SSLLKAAFLVYLLPLLALIAGAVLG 89 (135)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777888777777654
No 142
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=30.69 E-value=97 Score=25.87 Aligned_cols=47 Identities=19% Similarity=0.017 Sum_probs=27.4
Q ss_pred cchhHHHHHhhhhHHHHHHhhhheeCccccc-hhhhHHHHH-HHHHHHHH
Q 020772 252 NSALTTTIVGVLKGVGSTTLGFVVLGGVQVR-ALNVTGLLI-NTAGGVWY 299 (321)
Q Consensus 252 ~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t-~~~~iG~~l-il~g~~~~ 299 (321)
..+...+.++.+-|..+..+|..+-+- -.. .-+|+|.++ +.+|..+.
T Consensus 31 ~~~l~ig~~~~~~~~lg~~~G~~~~~~-i~~~~~~~ig~~iLi~iG~~mi 79 (206)
T TIGR02840 31 LSNLIIAVISGLFIFISMLLGKFLAKF-LPPKVTEILGAFILIAIGIWII 79 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hchhhHHHHHHHHHHHHHHHHH
Confidence 345566666777777777777776532 223 356666554 44455433
No 143
>PF15102 TMEM154: TMEM154 protein family
Probab=26.94 E-value=21 Score=27.87 Aligned_cols=23 Identities=22% Similarity=0.092 Sum_probs=11.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhh
Q 020772 286 VTGLLINTAGGVWYSYAKYQQKK 308 (321)
Q Consensus 286 ~iG~~lil~g~~~~~~~~~~~~~ 308 (321)
+++.++++..++++.+.|+++.|
T Consensus 66 VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 66 VLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred HHHHHHHHHHHHheeEEeecccC
Confidence 45555555555555555444433
No 144
>PRK01637 hypothetical protein; Reviewed
Probab=26.63 E-value=2.2e+02 Score=25.06 Aligned_cols=22 Identities=0% Similarity=-0.090 Sum_probs=10.8
Q ss_pred cchhhhHHHHHHHHHHHHHHHH
Q 020772 281 VRALNVTGLLINTAGGVWYSYA 302 (321)
Q Consensus 281 ~t~~~~iG~~lil~g~~~~~~~ 302 (321)
+-|.++.+.++.+.+-+-....
T Consensus 246 llWlyl~~~ilL~Gaelna~~~ 267 (286)
T PRK01637 246 FVWVYLSWCIVLLGAEITATLG 267 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666644444433333
No 145
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=26.56 E-value=4.3e+02 Score=25.21 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=18.9
Q ss_pred cchhhhHHHHHHHHHHHHHHHHH
Q 020772 281 VRALNVTGLLINTAGGVWYSYAK 303 (321)
Q Consensus 281 ~t~~~~iG~~lil~g~~~~~~~~ 303 (321)
++..|++++.++++|++++.+.+
T Consensus 254 l~~~Q~lSl~~il~gl~~~~~~~ 276 (460)
T PRK13108 254 IRINSFTSTFVFIGAVVYIILAP 276 (460)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhh
Confidence 78899999999999987765544
No 146
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.33 E-value=2.1e+02 Score=21.18 Aligned_cols=40 Identities=8% Similarity=0.009 Sum_probs=18.9
Q ss_pred hHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHHH
Q 020772 264 KGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAK 303 (321)
Q Consensus 264 ~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~~ 303 (321)
..++++.+||++=+-..=+++..+...++=.|....+..|
T Consensus 55 GilVGa~iG~llD~~agTsPwglIv~lllGf~AG~lnv~R 94 (116)
T COG5336 55 GILVGAGIGWLLDKFAGTSPWGLIVFLLLGFGAGVLNVLR 94 (116)
T ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777642211124555555554444444444443
No 147
>PHA03049 IMV membrane protein; Provisional
Probab=25.27 E-value=1e+02 Score=20.47 Aligned_cols=23 Identities=9% Similarity=0.093 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhh
Q 020772 284 LNVTGLLINTAGGVWYSYAKYQQ 306 (321)
Q Consensus 284 ~~~iG~~lil~g~~~~~~~~~~~ 306 (321)
..++++..+++|.++|...++++
T Consensus 5 ~~l~iICVaIi~lIvYgiYnkk~ 27 (68)
T PHA03049 5 IILVIICVVIIGLIVYGIYNKKT 27 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 34567777888999988765543
No 148
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=24.53 E-value=3.8e+02 Score=25.77 Aligned_cols=75 Identities=12% Similarity=0.081 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhhhhHHHHHHhhhhe------------eCccccchhhhHHHHHHHHH
Q 020772 228 LVILILSLVMGIILNFTMFLCTIVNSALTTTIVGVLKGVGSTTLGFVV------------LGGVQVRALNVTGLLINTAG 295 (321)
Q Consensus 228 ~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~~~~~v~~~~~~~~~------------~~e~~~t~~~~iG~~lil~g 295 (321)
.+.+..++.++.++--..++-..+.++......+....+.-++.+-.+ ++ .+++..+..|+.+-+++
T Consensus 422 AF~lAaSa~fPvivlglfWKr~n~~GAi~G~~~GL~~tlv~i~l~~~i~~~~~~~~~~~~~~-~~~~~~g~~sipv~F~~ 500 (529)
T COG4147 422 AFALAASANFPVIVLGLFWKRLNTAGAIAGMLLGLIVTLVLIILSPTIWVVILGHPGFGWAG-FPYEGPGLFSIPVGFLG 500 (529)
T ss_pred HHHHHHHcccchhhHHHHHhhccHHhHHHHHHHHHHHHHHHHHhCccccccccCcccccccc-CCCCCcchhhhhHHHHH
Confidence 444555555555554333444445555555555555555544444322 23 26778888999888888
Q ss_pred HHHHHHHH
Q 020772 296 GVWYSYAK 303 (321)
Q Consensus 296 ~~~~~~~~ 303 (321)
..+.+...
T Consensus 501 ~~ivSllt 508 (529)
T COG4147 501 AWIVSLLT 508 (529)
T ss_pred hHheeccC
Confidence 88776653
No 149
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=24.44 E-value=64 Score=21.60 Aligned_cols=8 Identities=13% Similarity=-0.018 Sum_probs=4.3
Q ss_pred ccchhhhH
Q 020772 280 QVRALNVT 287 (321)
Q Consensus 280 ~~t~~~~i 287 (321)
.+++.||.
T Consensus 27 ~~sp~qW~ 34 (68)
T PF04971_consen 27 QFSPSQWA 34 (68)
T ss_pred ccCcccch
Confidence 45555554
No 150
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=24.32 E-value=2.9e+02 Score=24.79 Aligned_cols=51 Identities=10% Similarity=0.044 Sum_probs=38.9
Q ss_pred hccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhh
Q 020772 96 SLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIA 146 (321)
Q Consensus 96 al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~ 146 (321)
-+..++.-+-++..-.--+.+.+++..+.|++++-..|.+..++..|+..-
T Consensus 263 Ll~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 263 LLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred eeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 345555555555555666778888888999999999999999999988876
No 151
>PF02355 SecD_SecF: Protein export membrane protein; InterPro: IPR022813 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component []. From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) []. The chaperone protein SecB [] is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion []. Together with SecY and SecG, SecE forms a multimeric channel through which preproteins are translocated, using both proton motive forces and ATP-driven secretion. The latter is mediated by SecA. The structure of the Escherichia coli SecYEG assembly revealed a sandwich of two membranes interacting through the extensive cytoplasmic domains []. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. The SecD and SecF equivalents of the Gram-positive bacterium Bacillus subtilis are jointly present in one polypeptide, denoted SecDF, that is required to maintain a high capacity for protein secretion. Unlike the SecD subunit of the pre-protein translocase of E. coli, SecDF of B. subtilis was not required for the release of a mature secretory protein from the membrane, indicating that SecDF is involved in earlier translocation steps []. Comparison with SecD and SecF proteins from other organisms revealed the presence of 10 conserved regions in SecDF, some of which appear to be important for SecDF function. Interestingly, the SecDF protein of B. subtilis has 12 putative transmembrane domains. Thus, SecDF does not only show sequence similarity but also structural similarity to secondary solute transporters []. This entry represents bacterial SecD and SecF protein export membrane proteins and their archaeal homologues []. It is found in association with PF07549 from PFAM SecD and SecF proteins are part of the multimeric protein export complex comprising SecA, D, E, F, G, Y, and YajC []. SecD and SecF are required to maintain a proton motive force []. ; PDB: 3AQP_A 2RRN_A 3AQO_B.
Probab=23.85 E-value=4.1e+02 Score=21.78 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=26.3
Q ss_pred HHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHH
Q 020772 256 TTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYS 300 (321)
Q Consensus 256 ~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~ 300 (321)
..+++...-.++..+.-..++|- ++|...+.|.+. .+|..+-+
T Consensus 58 ~~aii~l~~dv~i~l~~~~~~~~-~l~l~~iaall~-~iG~sVd~ 100 (189)
T PF02355_consen 58 LAAIIALIHDVLITLGIFSLFGI-ELTLPSIAALLT-IIGYSVDD 100 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--EE-HHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCC-cccHHHHHHHHH-HHHHHHhc
Confidence 33444444545555555566774 899999999877 77765543
No 152
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=22.43 E-value=5.3e+02 Score=22.59 Aligned_cols=83 Identities=11% Similarity=0.014 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCccccCcCChhhhHHHHHHHHHHHHHH--HHhHhhccCccchHHHHHHHhHHHHHHHHH
Q 020772 43 MTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANV--AFALASLKGVNIPMYIAIKRLTPLAVLVAG 120 (321)
Q Consensus 43 ~~i~~~r~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~al~~~~~~~~~~l~~~~pv~~~l~~ 120 (321)
...+..-...++.+.+..++.+++.+.++-.-+-|.++.-+.+-..-. +..-++++.++ .+-+..+.-|...++..
T Consensus 128 i~yt~~s~~~Ca~~~~~~~r~nrr~~s~lIald~kqW~Mst~lS~al~VaF~~a~~l~~T~--~a~l~~Y~DPmvlaL~~ 205 (314)
T COG3965 128 IAYTLVSVTGCAAIAWKLRRLNRRLKSPLIALDTKQWLMSTCLSAALFVAFAAAWLLAGTK--FAHLVVYADPMVLALVC 205 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhhhhcccCHHHHHHHH
Confidence 335555555555555555554433333444445566655443322111 11223444443 34455677888888888
Q ss_pred HHhcCCc
Q 020772 121 FFSGKGK 127 (321)
Q Consensus 121 ~l~~ke~ 127 (321)
..+-+-+
T Consensus 206 ~v~IplP 212 (314)
T COG3965 206 LVFIPLP 212 (314)
T ss_pred Hheeecc
Confidence 7775544
No 153
>PRK00052 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=22.11 E-value=1e+02 Score=26.87 Aligned_cols=22 Identities=9% Similarity=0.098 Sum_probs=18.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHH
Q 020772 281 VRALNVTGLLINTAGGVWYSYA 302 (321)
Q Consensus 281 ~t~~~~iG~~lil~g~~~~~~~ 302 (321)
+|..|+++..+++.|+.+..+.
T Consensus 237 ls~~Q~isl~~~~~gi~~~~~~ 258 (269)
T PRK00052 237 LTMGQILSIPMILLGIILLIWA 258 (269)
T ss_pred cCHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999998776544
No 154
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=21.94 E-value=4.9e+02 Score=21.95 Aligned_cols=32 Identities=16% Similarity=0.110 Sum_probs=20.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhcCCChh
Q 020772 283 ALNVTGLLINTAGGVWYSYAKYQQKKKKLPKS 314 (321)
Q Consensus 283 ~~~~iG~~lil~g~~~~~~~~~~~~~~~~~~~ 314 (321)
..+.+|..+++.|+.+.....+++-||++++|
T Consensus 175 l~N~~gl~~~~fg~~V~~~~~~~~~kr~~~~~ 206 (214)
T cd08764 175 LGNFIGIVLVIFGGLVVYLVTEPDYKRIELPE 206 (214)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcccCCCCCch
Confidence 46788999999998776655444434433333
No 155
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix. It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....
Probab=21.45 E-value=6.6e+02 Score=23.31 Aligned_cols=85 Identities=9% Similarity=0.013 Sum_probs=36.3
Q ss_pred HHHHHHhcCCcCCchhhhhHHHHhhhhhhhcccccccc-hhHHHHHHHH-HHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Q 020772 117 LVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFSFD-LSGYSMALTS-VFFQTMYLVLVEKSGAEDGLSSVEIMFYNS 194 (321)
Q Consensus 117 ~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~~~~~-~~G~~~~l~s-~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~ 194 (321)
.++++ +.++|++......- .+.|.+-++....-.+ +...+.++++ .+++-.+..+.||..=|...+...+-....
T Consensus 239 ~~~~~-~~~gk~~~~~~~nG--~laGlVaita~~~~v~p~~A~~iG~iag~i~~~~~~~l~~~~~iDD~~~~~~vHg~~G 315 (399)
T PF00909_consen 239 LLISY-LLSGKWSMVGICNG--ALAGLVAITAGAGYVTPWGALLIGAIAGLISYFGVSWLLKRLKIDDPVGAFAVHGVGG 315 (399)
T ss_dssp HHHHH-HHCSS--HHHHHHH--HHHHHHHHTTTTTTS-HHHHHHHHHHHHHHHHHHHHHHHHHHTS-HTTGHHHHCHHHH
T ss_pred HHhhh-ccccccchhhhhhh--hhhhhhheecccCCCcHHHHHHhhhhHhhhhhhheecccceeEeccccceEeeeeccH
Confidence 33443 33455665554322 2233333332222233 3345566656 445555544555543332345555555555
Q ss_pred hhHHHHHHHH
Q 020772 195 FLSLPFLVFL 204 (321)
Q Consensus 195 ~~~~~~~~~~ 204 (321)
.++.+...++
T Consensus 316 i~G~i~~glf 325 (399)
T PF00909_consen 316 IWGTILTGLF 325 (399)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 156
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=20.72 E-value=1.7e+02 Score=20.68 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=12.5
Q ss_pred hhhhHHHHHHHHHHHHHH
Q 020772 283 ALNVTGLLINTAGGVWYS 300 (321)
Q Consensus 283 ~~~~iG~~lil~g~~~~~ 300 (321)
...++|.++.++|...+.
T Consensus 4 ~~Fl~~l~lliig~~~~v 21 (92)
T PF13038_consen 4 ILFLVGLILLIIGGFLFV 21 (92)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445778888888877653
No 157
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=20.17 E-value=1.8e+02 Score=22.96 Aligned_cols=17 Identities=12% Similarity=0.186 Sum_probs=7.8
Q ss_pred HHHHHhhhhHHHHHHhh
Q 020772 256 TTTIVGVLKGVGSTTLG 272 (321)
Q Consensus 256 ~~s~~~~~~~v~~~~~~ 272 (321)
..+++.|+-|++..+.+
T Consensus 76 kaa~lvYllPLl~li~g 92 (154)
T PRK10862 76 RSALLVYMTPLVGLFLG 92 (154)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444454444444
No 158
>TIGR00836 amt ammonium transporter. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.
Probab=20.13 E-value=7.2e+02 Score=23.23 Aligned_cols=50 Identities=12% Similarity=0.021 Sum_probs=24.6
Q ss_pred hHHHHHHHHHH-HHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHH
Q 020772 156 SGYSMALTSVF-FQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLI 205 (321)
Q Consensus 156 ~G~~~~l~s~~-~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (321)
...+.++++++ |+-.+..+.||..=|...+...+-.....++.+....+.
T Consensus 281 ~A~viG~iag~~~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa 331 (403)
T TIGR00836 281 GAIIIGLVAGVLCYLAVSKLKKKLKIDDPLDAFAVHGVGGIWGLIATGLFA 331 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhhhhHHHHHHHHHHhc
Confidence 34455555543 444444344554223234555555555555655555543
Done!