Query 020772
Match_columns 321
No_of_seqs 147 out of 1367
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 07:57:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020772.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020772hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.5 1.7E-07 5.9E-12 71.8 5.9 67 236-303 37-105 (137)
2 3b5d_A Multidrug transporter E 98.5 5.9E-07 2E-11 66.4 8.4 71 80-150 34-105 (110)
3 2i68_A Protein EMRE; transmemb 98.3 5.9E-07 2E-11 68.8 5.8 70 80-149 34-104 (137)
4 3b5d_A Multidrug transporter E 98.0 2E-05 6.7E-10 58.1 7.7 59 243-302 45-104 (110)
5 3l1l_A Arginine/agmatine antip 51.9 39 0.0013 30.1 7.5 26 284-309 409-434 (445)
6 3rko_J NADH-quinone oxidoreduc 20.6 3.1E+02 0.01 21.4 10.0 68 134-208 8-75 (184)
7 2jo1_A Phospholemman; FXYD1, N 18.6 1.2E+02 0.0042 19.5 3.2 18 286-303 22-39 (72)
8 2b2h_A AMT-1, ammonium transpo 16.4 5.6E+02 0.019 22.7 20.1 195 51-258 162-372 (399)
9 2rdd_B UPF0092 membrane protei 14.2 75 0.0026 17.5 1.3 37 282-318 1-37 (37)
10 2l8s_A Integrin alpha-1; trans 10.5 2.6E+02 0.009 16.9 3.0 36 286-321 17-52 (54)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.49 E-value=1.7e-07 Score=71.80 Aligned_cols=67 Identities=9% Similarity=0.074 Sum_probs=46.0
Q ss_pred HHHHHHH-HHHHHHHhccchhHHHHH-hhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHHH
Q 020772 236 VMGIILN-FTMFLCTIVNSALTTTIV-GVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYAK 303 (321)
Q Consensus 236 ~~~~~~~-~~~~~~~~~~~a~~~s~~-~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~~ 303 (321)
++++... ++...++++.++..+..+ ..+.|+.+.++|++++|| ++|+.+++|+.+++.|+.+.+..+
T Consensus 37 i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE-~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQ-RLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp HHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHhcCC
Confidence 3334443 556688999999988887 899999999999999998 999999999999999999987643
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.48 E-value=5.9e-07 Score=66.38 Aligned_cols=71 Identities=13% Similarity=0.109 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHhHhhccCccchHHHHH-HHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhcccc
Q 020772 80 LPVSLFYNANVAFALASLKGVNIPMYIAI-KRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGD 150 (321)
Q Consensus 80 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~ 150 (321)
+...+++....++..+++++.|.+.+..+ ..+.|+++++.+++++||++++.++.++.+++.|+.+....+
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 34445578889999999999999999888 899999999999999999999999999999999999976544
No 3
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.35 E-value=5.9e-07 Score=68.82 Aligned_cols=70 Identities=13% Similarity=0.108 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHhHhhccCccchHHHHH-HHhHHHHHHHHHHHhcCCcCCchhhhhHHHHhhhhhhhccc
Q 020772 80 LPVSLFYNANVAFALASLKGVNIPMYIAI-KRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALG 149 (321)
Q Consensus 80 ~~~~~~~~~~~~~~~~al~~~~~~~~~~l-~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~ 149 (321)
+...+++....++.+++++++|++.+..+ .++.|+++++++++++||++++.+++++.++++|+.+....
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44445688999999999999999988877 89999999999999999999999999999999999997653
No 4
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.01 E-value=2e-05 Score=58.11 Aligned_cols=59 Identities=10% Similarity=0.075 Sum_probs=52.4
Q ss_pred HHHHHHHhccchhHHHHH-hhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHHHHH
Q 020772 243 FTMFLCTIVNSALTTTIV-GVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYSYA 302 (321)
Q Consensus 243 ~~~~~~~~~~~a~~~s~~-~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~~~ 302 (321)
++...+.|+.+...+..+ ..+.|+.+.+.+++++|| ++|..+++|+.+++.|+...+..
T Consensus 45 ~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E-~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 45 WLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQ-RLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHHHHhcC
Confidence 455578899999888777 899999999999999998 99999999999999999987653
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=51.87 E-value=39 Score=30.11 Aligned_cols=26 Identities=8% Similarity=-0.045 Sum_probs=18.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhc
Q 020772 284 LNVTGLLINTAGGVWYSYAKYQQKKK 309 (321)
Q Consensus 284 ~~~iG~~lil~g~~~~~~~~~~~~~~ 309 (321)
..+.|...++.|..+|...+++++++
T Consensus 409 ~~~~~~~~~~~g~~~y~~~~~~~~~~ 434 (445)
T 3l1l_A 409 EVMWSFVTLMVITAMYALNYNRLHKN 434 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 44567888889988888776554433
No 6
>3rko_J NADH-quinone oxidoreductase subunit J; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=20.57 E-value=3.1e+02 Score=21.38 Aligned_cols=68 Identities=7% Similarity=0.123 Sum_probs=35.9
Q ss_pred hhHHHHhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHHHHHHh
Q 020772 134 LSVLLTATGCVIAALGDFSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVT 208 (321)
Q Consensus 134 ~ai~~~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (321)
++.+....|+......+. .....+.+.+-++-|...+..+- +. ....++..|......+++....+..
T Consensus 8 ~a~~~i~~al~vv~~~n~---v~s~l~Li~~f~~~a~l~~ll~a---~F-la~~qilVYvGAi~VLflFvvMl~~ 75 (184)
T 3rko_J 8 CGLIAILATLRVITHTNP---VHALLYLIISLLAISGVFFSLGA---YF-AGALEIIVYAGAIMVLFVFVVMMLN 75 (184)
T ss_dssp HHHHHHHHHHHHHHCCSH---HHHHHHHHHHHHHHHHHHHHTTC---HH-HHHHHHHTHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCcH---HHHHHHHHHHHHHHHHHHHHhCh---HH-HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344444444444433322 23344444444555554444321 11 3557888888888877777777765
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=18.58 E-value=1.2e+02 Score=19.47 Aligned_cols=18 Identities=11% Similarity=-0.021 Sum_probs=9.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 020772 286 VTGLLINTAGGVWYSYAK 303 (321)
Q Consensus 286 ~iG~~lil~g~~~~~~~~ 303 (321)
+.+.++.+.|+++.-..|
T Consensus 22 ifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 22 VIAGILFILGILIVLSRR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCc
Confidence 344455566666554444
No 8
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A
Probab=16.44 E-value=5.6e+02 Score=22.66 Aligned_cols=195 Identities=11% Similarity=-0.002 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCccccCcCChhhhHHHHHHHHHHHHHHHHhHhhccCccc-------hHHHHHHHhHHHHHHHHHHHh
Q 020772 51 LATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNI-------PMYIAIKRLTPLAVLVAGFFS 123 (321)
Q Consensus 51 ~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~-------~~~~~l~~~~pv~~~l~~~l~ 123 (321)
..+......+..++.+.+++.+.........-.++.-+.++..|-+-....- -+..+.-+..-+..++++++.
T Consensus 162 ~~aL~~a~~LG~R~g~~~~~~~~hn~~~~~lG~~lLW~GWfGFN~GS~l~~~~~a~~a~~nT~lAaaag~l~~~~~~~~~ 241 (399)
T 2b2h_A 162 FAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVAINAVVVTNTSAAVAGFVWMVIGWIK 241 (399)
T ss_dssp HHHHHHHHHHCCCTTTTTSCCCCSCHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred cCCcCCchhhhhHHHHhhhhhhhcccccccchhHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhHHHHHHH
Q 020772 124 GKGKPTTQVTLSVLLTATGCVIAALGDFSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVF 203 (321)
Q Consensus 124 ~ke~~~~~~~~ai~~~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (321)
+|++......- ..-.+|.+-...+.-..+-..+.++++++..-....+.+|+.-|...+...+-.....++.+....
T Consensus 242 --gk~~~~~~~nG-~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~~l~~kl~iDD~l~a~~vHgv~Gi~G~l~~gl 318 (399)
T 2b2h_A 242 --GKPGSLGIVSG-AIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAMDFRIKKKIDESLDAWAIHGIGGLWGSVAVGI 318 (399)
T ss_dssp --SCCCHHHHHHH-HHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHH
T ss_pred --cCCCHHHHHHH-HHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCceeccchhhHHHHHHHHH
Q ss_pred H---------HHHhCCchhhhHhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Q 020772 204 L---------IIVTGEFPGSLSLLFSKSNSFSFLVILILSLVMGIILNFTMFLCTIVNSALTTT 258 (321)
Q Consensus 204 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~a~~~s 258 (321)
+ -...++..+...+ ...++.....+....+..++.+|++...+++
T Consensus 319 fa~~~~~g~~Gl~~g~~~ql~~Q----------l~g~~~~~~~~~v~~~i~~~il~~~~glRv~ 372 (399)
T 2b2h_A 319 LANPEVNGYAGLLFGNPQLLVSQ----------LIAVASTTAYAFLVTLILAKAVDAAVGLRVS 372 (399)
T ss_dssp HCCHHHHSCCCGGGTCHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHTCSBCC
T ss_pred HccccccCCCccccCcHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhcccCCCC
No 9
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=14.21 E-value=75 Score=17.49 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=0.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhhcCCChhhHhh
Q 020772 282 RALNVTGLLINTAGGVWYSYAKYQQKKKKLPKSDVEA 318 (321)
Q Consensus 282 t~~~~iG~~lil~g~~~~~~~~~~~~~~~~~~~~~~~ 318 (321)
+....+-..+++.++..+-..+..++++++.+|=.++
T Consensus 1 ~~~~~~l~~v~~~~ifYFl~iRPQ~Kr~K~~~~m~~~ 37 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFMILRPQQKRTKEHKKLMDS 37 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTGGGC
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhC
No 10
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=10.54 E-value=2.6e+02 Score=16.94 Aligned_cols=36 Identities=14% Similarity=0.027 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhcCCChhhHhhhhC
Q 020772 286 VTGLLINTAGGVWYSYAKYQQKKKKLPKSDVEAYRK 321 (321)
Q Consensus 286 ~iG~~lil~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (321)
+.|..+..+-++....-...+++++++.||.|-..|
T Consensus 17 l~GLLLL~Lii~~LwK~GFFKR~~~~~~~~~~~~~~ 52 (54)
T 2l8s_A 17 FAGLLLLMLLILALWKIGFFKRPLKKKMEKLEHHHH 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCSCCCCC------
T ss_pred HHHHHHHHHHHHHHHHcCcccCCCcchhhHHhhhcc
Done!