Query 020772
Match_columns 321
No_of_seqs 147 out of 1367
Neff 9.5
Searched_HMMs 13730
Date Mon Mar 25 07:57:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020772.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/020772hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u7ga_ f.44.1.1 (A:) Ammonium 58.0 47 0.0034 27.3 17.7 84 119-204 245-330 (383)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 34.7 21 0.0015 16.5 2.8 18 156-173 3-20 (27)
3 d1iwga8 f.35.1.1 (A:513-566,A: 31.0 95 0.0069 22.9 10.0 33 266-300 95-127 (222)
4 d1pv7a_ f.38.1.2 (A:) Lactose 21.8 1.6E+02 0.012 22.4 8.5 12 29-40 28-39 (417)
5 d1iwga7 f.35.1.1 (A:7-37,A:331 13.2 2.2E+02 0.016 20.2 8.3 50 249-299 60-109 (199)
6 d3dtub2 f.17.2.1 (B:30-129) Ba 6.4 2.2E+02 0.016 17.8 3.3 26 283-308 33-58 (100)
7 d1fftb2 f.17.2.1 (B:27-117) Cy 5.6 23 0.0016 22.6 -2.3 15 292-306 31-45 (91)
8 d2r6gf1 e.70.1.1 (F:13-260) Ma 4.8 6.1E+02 0.045 18.6 7.3 59 78-140 4-62 (248)
9 d1pw4a_ f.38.1.1 (A:) Glycerol 4.5 6.9E+02 0.05 18.8 21.3 13 114-126 194-206 (447)
10 d2oara1 f.16.1.1 (A:10-118) Ga 4.3 2.2E+02 0.016 18.4 2.1 10 281-290 58-67 (109)
No 1
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=58.03 E-value=47 Score=27.32 Aligned_cols=84 Identities=11% Similarity=-0.046 Sum_probs=40.0
Q ss_pred HHHHhcCCcCCchhhhhHHHHhhhhhhhcccccccchhH-HHHHHHHH-HHHHHHHHHHHhhcCCCCCCHHHHHHHHhhh
Q 020772 119 AGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFSFDLSG-YSMALTSV-FFQTMYLVLVEKSGAEDGLSSVEIMFYNSFL 196 (321)
Q Consensus 119 ~~~l~~ke~~~~~~~~ai~~~~~Gv~l~~~~~~~~~~~G-~~~~l~s~-~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~ 196 (321)
+...+.++|.+......-. +.|.+-++......++.+ .+.+.+++ +++-.+..+.+|..-|+..+...+......+
T Consensus 245 ~~~~~~~~k~~~~~~~nG~--LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~ 322 (383)
T d1u7ga_ 245 FGEWALRGLPSLLGACSGA--IAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIV 322 (383)
T ss_dssp HHHHHHHSSCCHHHHHHHH--HHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHh--hhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhhcccccccceEeehhhhHHH
Confidence 3334456777766654322 234444333222233443 55555544 4555555555554323234555555555555
Q ss_pred HHHHHHHH
Q 020772 197 SLPFLVFL 204 (321)
Q Consensus 197 ~~~~~~~~ 204 (321)
+.+....+
T Consensus 323 G~l~~glf 330 (383)
T d1u7ga_ 323 GCIMTGIF 330 (383)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55544443
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=34.66 E-value=21 Score=16.52 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 020772 156 SGYSMALTSVFFQTMYLV 173 (321)
Q Consensus 156 ~G~~~~l~s~~~~a~~~v 173 (321)
.|.+..-++.++||.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 588888889999998863
No 3
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=31.03 E-value=95 Score=22.92 Aligned_cols=33 Identities=24% Similarity=0.063 Sum_probs=22.6
Q ss_pred HHHHHhhhheeCccccchhhhHHHHHHHHHHHHHH
Q 020772 266 VGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWYS 300 (321)
Q Consensus 266 v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~~ 300 (321)
+.+.+.+..+.+. +++....+|.++ ++|....+
T Consensus 95 ~~~~~~~l~~~g~-~~~~~~~~g~i~-l~Gi~v~~ 127 (222)
T d1iwga8 95 VIGALLAATFRGL-TNDVYFQVGLLT-TIGLSAKN 127 (222)
T ss_dssp HHHHHHHHHHTTC-CBCHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHcCC-chhhhhcccccc-hhhhhhhH
Confidence 3445566667775 999999998888 55655443
No 4
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=21.82 E-value=1.6e+02 Score=22.41 Aligned_cols=12 Identities=8% Similarity=-0.216 Sum_probs=5.0
Q ss_pred HHHHHHHHhccC
Q 020772 29 VFINKAVIMQYA 40 (321)
Q Consensus 29 ~~~nK~~~~~~~ 40 (321)
.+...++.++.+
T Consensus 28 ~~l~~~l~~~~g 39 (417)
T d1pv7a_ 28 PFFPIWLHDINH 39 (417)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHccC
Confidence 344444444344
No 5
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=13.22 E-value=2.2e+02 Score=20.22 Aligned_cols=50 Identities=14% Similarity=-0.016 Sum_probs=31.9
Q ss_pred HhccchhHHHHHhhhhHHHHHHhhhheeCccccchhhhHHHHHHHHHHHHH
Q 020772 249 TIVNSALTTTIVGVLKGVGSTTLGFVVLGGVQVRALNVTGLLINTAGGVWY 299 (321)
Q Consensus 249 ~~~~~a~~~s~~~~~~~v~~~~~~~~~~~e~~~t~~~~iG~~lil~g~~~~ 299 (321)
.+...+.....+...-.+........++|. +++.....+..+.+....-+
T Consensus 60 ~rs~~~~li~~~~i~~~i~~~~~~m~~~g~-~l~~~s~~~~~i~igi~vd~ 109 (199)
T d1iwga7 60 LQNFRATLIPTIAVPVVLLGTFAVLAAFGF-SINTLTMFGMVLAIGLLVDD 109 (199)
T ss_dssp CCCTTTTTHHHHHHHHHHHHHHHHHHTTTC-CSCHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhhheeccccchhhHHHHHHhhcCCC-chHHHHHHHHHHHHHHhccc
Confidence 344455555555555556666666677785 89988888888755554434
No 6
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.38 E-value=2.2e+02 Score=17.75 Aligned_cols=26 Identities=12% Similarity=0.250 Sum_probs=14.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhh
Q 020772 283 ALNVTGLLINTAGGVWYSYAKYQQKK 308 (321)
Q Consensus 283 ~~~~iG~~lil~g~~~~~~~~~~~~~ 308 (321)
..-..++.+.+.|...|...|.|+++
T Consensus 33 ~~i~~~I~~~V~~~l~~~~~~~r~~~ 58 (100)
T d3dtub2 33 LVIIAAITIFVTLLILYAVWRFHEKR 58 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHBTTT
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhccC
Confidence 33445555556677777666555443
No 7
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=5.59 E-value=23 Score=22.59 Aligned_cols=15 Identities=13% Similarity=-0.259 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHhh
Q 020772 292 NTAGGVWYSYAKYQQ 306 (321)
Q Consensus 292 il~g~~~~~~~~~~~ 306 (321)
.+.|.+.|...|.|+
T Consensus 31 ~V~~~~~~~~~ryR~ 45 (91)
T d1fftb2 31 PAILMAVGFAWKYRA 45 (91)
T ss_dssp HHHHHHHTTTTTTTT
T ss_pred HHHHHHHhhheeeec
Confidence 345555555444443
No 8
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=4.78 E-value=6.1e+02 Score=18.64 Aligned_cols=59 Identities=8% Similarity=-0.115 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHhHhhccCccchHHHHHHHhHHHHHHHHHHHhcCCcCCchhhhhHHHHh
Q 020772 78 KLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTA 140 (321)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~al~~~~~~~~~~l~~~~pv~~~l~~~l~~ke~~~~~~~~ai~~~~ 140 (321)
+++.+|++.++..++.......-+...+. ...+.+.+..+.++.+|.-+.|++-=.+.+
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~ 62 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVYPGMAG 62 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhhhHHHH
Confidence 45566777666666655555554444433 233556667778888787777765433333
No 9
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=4.47 E-value=6.9e+02 Score=18.80 Aligned_cols=13 Identities=15% Similarity=0.166 Sum_probs=6.0
Q ss_pred HHHHHHHHHhcCC
Q 020772 114 LAVLVAGFFSGKG 126 (321)
Q Consensus 114 v~~~l~~~l~~ke 126 (321)
+...++.+.+.+|
T Consensus 194 ~~~~~~~~~~~~~ 206 (447)
T d1pw4a_ 194 ILVALFAFAMMRD 206 (447)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHHHhccc
Confidence 3444445555444
No 10
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=4.26 E-value=2.2e+02 Score=18.36 Aligned_cols=10 Identities=0% Similarity=-0.167 Sum_probs=4.1
Q ss_pred cchhhhHHHH
Q 020772 281 VRALNVTGLL 290 (321)
Q Consensus 281 ~t~~~~iG~~ 290 (321)
+.+..++..+
T Consensus 58 i~~G~fi~a~ 67 (109)
T d2oara1 58 IDLNVLLSAA 67 (109)
T ss_dssp ECHHHHHHHH
T ss_pred eeHHHHHHHH
Confidence 3334444443
Done!