BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020773
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
pdb|3CEG|B Chain B, Crystal Structure Of The Ubc Domain Of Baculoviral Iap
Repeat- Containing Protein 6
Length = 323
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 266 IFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPVVFITIQGA 319
+FVR E R+++ + ++ GP+ TPY +G F FD FP YP+ PP+V + G
Sbjct: 100 VFVRCDEERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGG 153
>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150
Length = 169
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 248 AKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPN 307
A +++ E +L P I + +M+ LRA ++G + TPY G+F + I P YP
Sbjct: 6 ASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPF 65
Query: 308 EPP-VVFIT 315
EPP + F+T
Sbjct: 66 EPPQIRFLT 74
>pdb|1JAS|A Chain A, Hsubc2b
pdb|2YB6|A Chain A, Native Human Rad6
pdb|2YBF|A Chain A, Complex Of Rad18 (Rad6 Binding Domain) With Rad6b
pdb|2Y4W|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Rad6b
Length = 152
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
+++ ++K L+++ P + E + AV+ GP GTP+ DG F F YPN+
Sbjct: 7 RRLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNK 66
Query: 309 PPVV 312
PP V
Sbjct: 67 PPTV 70
>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme,
Ubc1
Length = 215
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 248 AKKIQEEWKILEKNLPDTIFVR-VCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYP 306
AK+I +E + ++ + I + V E+ + L+ +GP GTPY G FV D P YP
Sbjct: 4 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYP 63
Query: 307 NEPP 310
+PP
Sbjct: 64 FKPP 67
>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
pdb|2F4Z|B Chain B, Toxoplasma Gondii Ubiquitin Conjugating Enzyme
Tgtwinscan_2721- E2 Domain
Length = 193
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 279 RAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPP-VVFIT 315
R + GP GTPY G F D + PP YP PP + F+T
Sbjct: 78 RGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVT 115
>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|B Chain B, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
pdb|1Q34|C Chain C, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 163
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
+++ ++K L+++ P + E + A++ GP TP+ DG F F YPN+
Sbjct: 7 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 66
Query: 309 PPVV-FIT 315
PP V FI+
Sbjct: 67 PPTVKFIS 74
>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1FZY|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
pdb|1FZY|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae Ubiquitin
Conjugating Enzyme 1
Length = 149
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 248 AKKIQEEWKILEKNLPDTIFVR-VCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYP 306
AK+I +E + ++ + I + V E+ + L+ +GP GTPY G FV D P YP
Sbjct: 3 AKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYP 62
Query: 307 NEPP 310
+PP
Sbjct: 63 FKPP 66
>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a
Crystallographic Structure Of Ubiquitin-Conjugating
Enzyme (Ubc-1) From Caenorhabditis Elegans
Length = 157
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
+++ ++K L+++ P + E + A++ GP TP+ DG F F YPN+
Sbjct: 10 RRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNK 69
Query: 309 PPVV-FIT 315
PP V FI+
Sbjct: 70 PPTVKFIS 77
>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex
pdb|2OXQ|B Chain B, Structure Of The Ubch5 :chip U-Box Complex
Length = 152
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+IQ+E + L+++ P + +A ++GPS +PY G+F FP YP +
Sbjct: 9 KRIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFK 68
Query: 309 PPVVFITIQ 317
PP V T +
Sbjct: 69 PPKVAFTTK 77
>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana
Length = 152
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K++ ++K L+++ P I + + L AV+ GP TP+ G F F YPN+
Sbjct: 7 KRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNK 66
Query: 309 PPVV 312
PP V
Sbjct: 67 PPTV 70
>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
pdb|1AYZ|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a
Resolution
Length = 169
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
+++ ++K ++++ P + + + A++IGP+ TPY DG F F YPN+
Sbjct: 7 RRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNK 66
Query: 309 PPVV 312
PP V
Sbjct: 67 PPHV 70
>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating
Enzyme E2 From Toxoplasma Gondii
Length = 166
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 33/69 (47%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L K+ P M +A ++GP +PY G+F + FP YP +
Sbjct: 24 KRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFK 83
Query: 309 PPVVFITIQ 317
PP V T +
Sbjct: 84 PPKVNFTTK 92
>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
pdb|3F92|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda
(Huntington Interacting Protein 2) M172a Mutant
Crystallized At Ph 8.5
Length = 253
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 219 KQFDTVDDFSDHHYNRMGFLGEEKPPKNWA-KKIQEEWKIL---EKNLPDTIFVRVCEAR 274
+ D+ D +D M +G E N A ++I+ E+K + E+ + I V + +
Sbjct: 29 QHMDSPDLGTDDDDKAMADIGSEFDMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDEN 88
Query: 275 MELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPP-VVFIT 315
LR + GP TPY G + + P +YP PP V FIT
Sbjct: 89 FTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFIT 130
>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2
E1
Length = 194
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 248 AKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPN 307
AK+IQ+E + + P + R+ ++GP G+ Y G+F D F P YP
Sbjct: 50 AKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPF 109
Query: 308 EPPVV 312
+PP V
Sbjct: 110 KPPKV 114
>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
Length = 148
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%)
Query: 248 AKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPN 307
+K+I +E LE++ P + + +A ++GP+ +PY G+F FP YP
Sbjct: 4 SKRIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPF 63
Query: 308 EPPVVFITIQ 317
+PP + T +
Sbjct: 64 KPPKISFTTK 73
>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|B Chain B, Human Ubiquitin Conjugating Enzyme E2e2
pdb|1Y6L|C Chain C, Human Ubiquitin Conjugating Enzyme E2e2
Length = 149
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 248 AKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPN 307
AK+IQ+E + + P + R+ ++GP G+ Y G+F D F P YP
Sbjct: 5 AKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPF 64
Query: 308 EPPVV 312
+PP V
Sbjct: 65 KPPKV 69
>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating
Enzyme, Pfe1350c, From Plasmodium Falciparum
Length = 149
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
++I +E + L P I ++ GP GTPY G + + P YP E
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 309 PP-VVFIT 315
PP V F+T
Sbjct: 64 PPKVRFLT 71
>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect
pdb|3JVZ|B Chain B, E2~ubiquitin-Hect
pdb|3JW0|A Chain A, E2~ubiquitin-Hect
pdb|3JW0|B Chain B, E2~ubiquitin-Hect
Length = 146
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 248 AKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPN 307
+K+I +E L ++ P M +A ++GP+ +PY G+F FP YP
Sbjct: 2 SKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPF 61
Query: 308 EPPVVFITIQ 317
+PP V T +
Sbjct: 62 KPPKVAFTTR 71
>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|J Chain J, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|K Chain K, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|L Chain L, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|B Chain B, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|C Chain C, Crystal Structure Of Human Otub1UBCH5B~UBUB
Length = 399
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 309 PPVVFITIQ 317
PP V T +
Sbjct: 66 PPKVAFTTR 74
>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
pdb|3E95|B Chain B, Crystal Structure Of The Plasmodium Falciparum Ubiquitin
Conjugating Enzyme Complex, Pfubc13-Pfuev1a
Length = 151
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
++I +E + L P I ++ GP GTPY G + + P YP E
Sbjct: 4 RRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPME 63
Query: 309 PP-VVFIT 315
PP V F+T
Sbjct: 64 PPKVRFLT 71
>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate
Length = 150
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 7 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 66
Query: 309 PPVVFITIQ 317
PP V T +
Sbjct: 67 PPKVAFTTR 75
>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile88ala
Length = 149
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 309 PPVVFITIQ 317
PP V T +
Sbjct: 66 PPKVAFTTR 74
>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
Length = 163
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I E L K+ P + + +A ++GP+ +PY G+F FP YP +
Sbjct: 4 KRINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFK 63
Query: 309 PPVVFITIQ 317
PP V T +
Sbjct: 64 PPKVNFTTR 72
>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating
Enzyme (E2) Ubch5b
Length = 152
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 9 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 68
Query: 309 PPVVFITIQ 317
PP V T +
Sbjct: 69 PPKVAFTTR 77
>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate
Length = 147
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 4 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 309 PPVVFITIQ 317
PP V T +
Sbjct: 64 PPKVAFTTR 72
>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type
Length = 149
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 309 PPVVFITIQ 317
PP V T +
Sbjct: 66 PPKVAFTTR 74
>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 149
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 309 PPVVFITIQ 317
PP V T +
Sbjct: 66 PPKVAFTTR 74
>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ser94gly
Length = 149
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 309 PPVVFITIQ 317
PP V T +
Sbjct: 66 PPKVAFTTR 74
>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|D Chain D, Structure Of Birc7-Ubch5b-Ub Complex
Length = 147
Score = 37.4 bits (85), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 4 KRIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 309 PPVVFITIQ 317
PP V T +
Sbjct: 64 PPKVAFTTR 72
>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme
Length = 157
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 14 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 73
Query: 309 PPVVFITIQ 317
PP V T +
Sbjct: 74 PPKVAFTTR 82
>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure
Length = 149
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 6 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 309 PPVVFITIQ 317
PP V T +
Sbjct: 66 PPKVAFTTR 74
>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex
pdb|1W4U|A Chain A, Nmr Solution Structure Of The Ubiquitin Conjugating Enzyme
Ubch5b
pdb|4A49|B Chain B, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
pdb|4A4B|C Chain C, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
pdb|4A4C|C Chain C, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 147
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 4 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 63
Query: 309 PPVVFITIQ 317
PP V T +
Sbjct: 64 PPKVAFTTR 72
>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 22 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 81
Query: 309 PPVVFITIQ 317
PP V T +
Sbjct: 82 PPKVAFTTR 90
>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s
pdb|1ZDN|B Chain B, Ubiquitin-Conjugating Enzyme E2s
Length = 158
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 32/70 (45%)
Query: 241 EKPPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCI 300
E P + + + +E L + PD I V E + L+ + GP GTPY GLF +
Sbjct: 8 ENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLL 67
Query: 301 FPPSYPNEPP 310
+P PP
Sbjct: 68 LGKDFPASPP 77
>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin-
Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans:
Functional And Evolutionary Significance
Length = 150
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+IQ+E + L ++ P + +A ++GP +PY G+F FP YP +
Sbjct: 7 KRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFK 66
Query: 309 PPVVFITIQ 317
PP V T +
Sbjct: 67 PPKVAFTTR 75
>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex
Length = 146
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 3 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 62
Query: 309 PPVVFITIQ 317
PP V T +
Sbjct: 63 PPKVAFTTR 71
>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b
Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin
Conjugating Enzyme
Length = 157
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 14 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 73
Query: 309 PPVVFITIQ 317
PP V T +
Sbjct: 74 PPKVAFTTR 82
>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2C4O|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|C Chain C, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
pdb|2CLW|D Chain D, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5b
Length = 165
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 22 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 81
Query: 309 PPVVFITIQ 317
PP V T +
Sbjct: 82 PPKVAFTTR 90
>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c
pdb|1X23|B Chain B, Crystal Structure Of Ubch5c
pdb|1X23|C Chain C, Crystal Structure Of Ubch5c
pdb|1X23|D Chain D, Crystal Structure Of Ubch5c
Length = 155
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A ++GP+ +PY G+F FP YP +
Sbjct: 12 KRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFK 71
Query: 309 PPVVFITIQ 317
PP V T +
Sbjct: 72 PPKVAFTTR 80
>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex
Length = 217
Score = 37.0 bits (84), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 249 KKIQEEWKIL---EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSY 305
++I+ E+K + E+ + I V + + LR + GP TPY G + + P +Y
Sbjct: 24 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETY 83
Query: 306 PNEPP-VVFIT 315
P PP V FIT
Sbjct: 84 PFNPPKVRFIT 94
>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant
Ile37ala
Length = 149
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+I +E L ++ P M +A +GP+ +PY G+F FP YP +
Sbjct: 6 KRIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFK 65
Query: 309 PPVVFITIQ 317
PP V T +
Sbjct: 66 PPKVAFTTR 74
>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k
pdb|2BF8|A Chain A, Crystal Structure Of Sumo Modified Ubiquitin Conjugating
Enzyme E2-25k
Length = 159
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 249 KKIQEEWKIL---EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSY 305
++I+ E+K + E+ + I V + + LR + GP TPY G + + P +Y
Sbjct: 11 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETY 70
Query: 306 PNEPP-VVFIT 315
P PP V FIT
Sbjct: 71 PFNPPKVRFIT 81
>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|1YLA|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington
Interacting Protein 2)
pdb|2O25|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|B Chain B, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
Length = 202
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 249 KKIQEEWKIL---EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSY 305
++I+ E+K + E+ + I V + + LR + GP TPY G + + P +Y
Sbjct: 9 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETY 68
Query: 306 PNEPP-VVFIT 315
P PP V FIT
Sbjct: 69 PFNPPKVRFIT 79
>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 201
Score = 36.6 bits (83), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 249 KKIQEEWKIL---EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSY 305
++I+ E+K + E+ + I V + + LR + GP TPY G + + P +Y
Sbjct: 8 QRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETY 67
Query: 306 PNEPP-VVFIT 315
P PP V FIT
Sbjct: 68 PFNPPKVRFIT 78
>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating
Enzyme From Entamoeba Histolytica
Length = 151
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
++IQ+E + ++++ P + A + GP +PY GLF D FP YP +
Sbjct: 7 RRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFK 66
Query: 309 PP-VVFIT 315
P V F+T
Sbjct: 67 APRVTFMT 74
>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|E Chain E, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 153
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+IQ+E L+++ P + +A ++GP + Y G+F FP YP +
Sbjct: 10 KRIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 69
Query: 309 PPVVFITIQ 317
PP + T +
Sbjct: 70 PPKIAFTTK 78
>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating
Enzyme From Plasmodium Yoelii
Length = 216
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 250 KIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEP 309
++Q+E K +E I + ++ + GP GTPY G F P YP P
Sbjct: 27 RLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNP 86
Query: 310 P-VVFIT 315
P + F+T
Sbjct: 87 PKIKFVT 93
>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|D Chain D, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|F Chain F, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|H Chain H, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 149
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+IQ+E L+++ P + +A ++GP + Y G+F FP YP +
Sbjct: 6 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 65
Query: 309 PPVVFITIQ 317
PP + T +
Sbjct: 66 PPKIAFTTK 74
>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|D Chain D, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|A Chain A, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
pdb|3PTF|B Chain B, X-Ray Structure Of The Non-Covalent Complex Between Ubch5a
And Ubiquitin
Length = 153
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+IQ+E L+++ P + +A ++GP + Y G+F FP YP +
Sbjct: 10 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 69
Query: 309 PPVVFITIQ 317
PP + T +
Sbjct: 70 PPKIAFTTK 78
>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|B Chain B, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|C Chain C, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
pdb|2H2Y|D Chain D, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From
Plasmodium Falciparum
Length = 136
Score = 35.0 bits (79), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 246 NWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSY 305
N +IQ+E KN P + V + + + +G T Y + ++ IFP +Y
Sbjct: 20 NANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNY 79
Query: 306 PNEPPVVF 313
P +PP+V+
Sbjct: 80 PLKPPIVY 87
>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
pdb|2C4P|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme
Ubch5a
Length = 165
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE 308
K+IQ+E L+++ P + +A ++GP + Y G+F FP YP +
Sbjct: 22 KRIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFK 81
Query: 309 PPVVFITIQ 317
PP + T +
Sbjct: 82 PPKIAFTTK 90
>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a
Length = 153
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 275 MELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPP-VVFIT 315
+ + + GP +PY DG+F + P YP E P V F+T
Sbjct: 32 LRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 73
>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN
Length = 152
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 275 MELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPP-VVFIT 315
+ + + GP +PY DG+F + P YP E P V F+T
Sbjct: 32 LRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 73
>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX
Length = 155
Score = 33.9 bits (76), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 275 MELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPP-VVFIT 315
+ + + GP +PY DG+F + P YP E P V F+T
Sbjct: 34 LRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 75
>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13
pdb|1JBB|B Chain B, Ubiquitin Conjugating Enzyme, Ubc13
Length = 153
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 275 MELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPP-VVFIT 315
+ + + GP +PY DG+F + P YP E P V F+T
Sbjct: 32 LRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLT 73
>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces
Cerevisiae
Length = 165
Score = 32.3 bits (72), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 245 KNWAKKIQEEWKILEKNLPDTIFVRV-CEARMELLRAVMIGPSGTPYHDGLFVFDCIFPP 303
K K++ +E + L K+ P I E + + ++ GP TPY DG+F FP
Sbjct: 3 KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPK 62
Query: 304 SYPNEPPVVFIT 315
YP PP + T
Sbjct: 63 DYPLSPPKLTFT 74
>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2
pdb|2F4W|B Chain B, Human Ubiquitin-Conjugating Enzyme E2 J2
Length = 187
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 38/80 (47%)
Query: 235 MGFLGEEKPPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGL 294
M ++ P +++++++ ++K+ I + + V+ GP TPY G
Sbjct: 3 MSSTSSKRAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGY 62
Query: 295 FVFDCIFPPSYPNEPPVVFI 314
+ IFP +P +PP +++
Sbjct: 63 YHGKLIFPREFPFKPPSIYM 82
>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
pdb|3ONG|D Chain D, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2
Interactions In Sumo Pathways
Length = 159
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 249 KKIQEEWKILEKNLPDTIF---VRVCEARMELLR--AVMIGPSGTPYHDGLFVFDCIFPP 303
+++QEE K K+ P + V+ + M+L + A + G GT + G++ +P
Sbjct: 9 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 68
Query: 304 SYPNEPPVV 312
YP++PP V
Sbjct: 69 EYPSKPPKV 77
>pdb|3Q6V|A Chain A, Crystal Structure Of Serratia Fonticola Sfh-I: Glycerol
Complex
pdb|3Q6V|B Chain B, Crystal Structure Of Serratia Fonticola Sfh-I: Glycerol
Complex
pdb|3SD9|A Chain A, Crystal Structure Of Serratia Fonticola Sfh-I: Source Of
The Nucleophile In The Catalytic Mechanism Of Mono-Zinc
Metallo-Beta- Lactamases
pdb|3SD9|B Chain B, Crystal Structure Of Serratia Fonticola Sfh-I: Source Of
The Nucleophile In The Catalytic Mechanism Of Mono-Zinc
Metallo-Beta- Lactamases
Length = 233
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 246 NWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVF 297
N+ ++ ++ LEK+LPDT+F + +RA+ +G + T DG+FV+
Sbjct: 109 NFTRQGNNKYPNLEKSLPDTVFPGDFNLQNGSIRAMYLGEAHT--KDGIFVY 158
>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|B Chain B, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|C Chain C, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2GJD|D Chain D, Distinct Functional Domains Of Ubc9 Dictate Cell Survival
And Resistance To Genotoxic Stress
pdb|2EKE|A Chain A, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
pdb|2EKE|B Chain B, Structure Of A Sumo-Binding-Motif Mimic Bound To Smt3p-
Ubc9p: Conservation Of A Noncovalent Ubiquitin-Like
Protein-E2 Complex As A Platform For Selective
Interactions Within A Sumo Pathway
Length = 157
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 249 KKIQEEWKILEKNLPDTIF---VRVCEARMELLR--AVMIGPSGTPYHDGLFVFDCIFPP 303
+++QEE K K+ P + V+ + M+L + A + G GT + G++ +P
Sbjct: 7 QRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPN 66
Query: 304 SYPNEPPVV 312
YP++PP V
Sbjct: 67 EYPSKPPKV 75
>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex
Length = 152
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 282 MIGPSGTPYHDGLFVFDCIFPPSYPNEPPVVFITIQ 317
++ P PYH F FPP YP +PP++ T +
Sbjct: 37 LLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTK 72
>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1
Length = 172
Score = 30.8 bits (68), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 280 AVMIGPSGTPYHDGLFVFDCIFPPSYPNEPP-VVFIT 315
++IGP T Y G+F FP YP PP + FIT
Sbjct: 52 VLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFIT 88
>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8
pdb|1WZV|B Chain B, Crystal Structure Of Ubch8
pdb|1WZW|A Chain A, Crystal Structure Of Ubch8
Length = 155
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 282 MIGPSGTPYHDGLFVFDCIFPPSYPNEPPVVFITIQ 317
++ P PYH F FPP YP +PP++ T +
Sbjct: 40 LLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTK 75
>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2
Length = 125
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 246 NWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSY 305
N +IQ+E N P + V + + +G T Y + ++ IFP Y
Sbjct: 6 NANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDY 65
Query: 306 PNEPPVVF 313
P +PP+V+
Sbjct: 66 PLKPPIVY 73
>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
pdb|3FSH|B Chain B, Crystal Structure Of The Ubiquitin Conjugating Enzyme
Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78
Length = 168
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 249 KKIQEEWKILEKNLPDTIFVR-VCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPN 307
K++ E+K L N P+ I + E A+++GP T + G+F FP YP
Sbjct: 10 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 69
Query: 308 EPPVVFITIQ 317
PP + T +
Sbjct: 70 SPPKMRFTCE 79
>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|B Chain B, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
pdb|2CYX|C Chain C, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2
(Ube2g2UBC7)
Length = 170
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 249 KKIQEEWKILEKNLPDTIFVR-VCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPN 307
K++ E+K L N P+ I + E A+++GP T + G+F FP YP
Sbjct: 12 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 71
Query: 308 EPPVVFITIQ 317
PP + T +
Sbjct: 72 SPPKMRFTCE 81
>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure
Length = 172
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 272 EARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPP 310
E + A++ GPS TPY + F P SYP PP
Sbjct: 44 ETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPP 82
>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme
Ube2g2
Length = 167
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 249 KKIQEEWKILEKNLPDTIFVR-VCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPN 307
K++ E+K L N P+ I + E A+++GP T + G+F FP YP
Sbjct: 9 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 68
Query: 308 EPPVVFITIQ 317
PP + T +
Sbjct: 69 SPPKMRFTCE 78
>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain
Of Gp78 At 1.8-A Resolution
Length = 164
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 249 KKIQEEWKILEKNLPDTIFVR-VCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPN 307
K++ E+K L N P+ I + E A+++GP T + G+F FP YP
Sbjct: 6 KRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPL 65
Query: 308 EPPVVFITIQ 317
PP + T +
Sbjct: 66 SPPKMRFTCE 75
>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex
Length = 163
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%)
Query: 250 KIQEEWKILEKNLPDTIFVRVCEAR---MELL--RAVMIGPSGTPYHDGLFVFDCIFPPS 304
++QEE K ++ P + + C++ ++L+ + + G T + GL+ FP
Sbjct: 14 RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEE 73
Query: 305 YPNEPPVVFIT 315
YP PP T
Sbjct: 74 YPTRPPKCRFT 84
>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure
Length = 172
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 272 EARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPP 310
E + A++ GPS TPY + F P SYP PP
Sbjct: 44 ETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPP 82
>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|E Chain E, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|H Chain H, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
pdb|2C2V|K Chain K, Crystal Structure Of The Chip-Ubc13-Uev1a Complex
Length = 154
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 251 IQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYP-NEP 309
I+E ++L + +P I E+ V+ GP +P+ G F + P YP P
Sbjct: 11 IKETQRLLAEPVPG-IKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 69
Query: 310 PVVFIT 315
V F+T
Sbjct: 70 KVRFMT 75
>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure
Length = 172
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 272 EARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPP 310
E + A++ GPS TPY + F P SYP PP
Sbjct: 44 ETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPP 82
>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|D Chain D, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 155
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 251 IQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYP-NEP 309
I+E ++L + +P I E+ V+ GP +P+ G F + P YP P
Sbjct: 12 IKETQRLLAEPVPG-IKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 70
Query: 310 PVVFIT 315
V F+T
Sbjct: 71 KVRFMT 76
>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|B Chain B, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
pdb|1YF9|C Chain C, Structural Analysis Of Leishmania Major Ubiquitin
Conjugating Enzyme E2
Length = 171
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPPVV 312
GP GTPY DG ++ P YP + P +
Sbjct: 46 GPEGTPYEDGTWMLHVQLPSDYPFKSPSI 74
>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|F Chain F, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|J Chain J, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 155
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 251 IQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYP-NEP 309
I+E ++L + +P I E+ V+ GP +P+ G F + P YP P
Sbjct: 14 IKETQRLLAEPVPG-IKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 72
Query: 310 PVVFIT 315
V F+T
Sbjct: 73 KVRFMT 78
>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|E Chain E, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|G Chain G, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|J Chain J, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|L Chain L, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|N Chain N, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Q Chain Q, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|S Chain S, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|U Chain U, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|X Chain X, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|Z Chain Z, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|BB Chain b, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|EE Chain e, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|GG Chain g, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|II Chain i, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|LL Chain l, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|NN Chain n, Crystalstructure Of The Ubiquitin Protease
pdb|3VON|PP Chain p, Crystalstructure Of The Ubiquitin Protease
Length = 148
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 251 IQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYP-NEP 309
I+E ++L + +P I E+ V+ GP +P+ G F + P YP P
Sbjct: 7 IKETQRLLAEPVPG-IKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 65
Query: 310 PVVFIT 315
V F+T
Sbjct: 66 KVRFMT 71
>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13
pdb|4DHI|D Chain D, Structure Of C. Elegans Otub1 Bound To Human Ubc13
pdb|4DHJ|C Chain C, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|K Chain K, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|G Chain G, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|N Chain N, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|F Chain F, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 152
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 251 IQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYP-NEP 309
I+E ++L + +P I E+ V+ GP +P+ G F + P YP P
Sbjct: 9 IKETQRLLAEPVPG-IKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAP 67
Query: 310 PVVFIT 315
V F+T
Sbjct: 68 KVRFMT 73
>pdb|2H7R|A Chain A, L244a Mutant Of Cytochrome P450cam Complexed With
Imidazole
pdb|2H7S|A Chain A, L244a Mutant Of Cytochrome P450cam
pdb|2H7S|C Chain C, L244a Mutant Of Cytochrome P450cam
Length = 414
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 31 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 88
Query: 303 PSYPNE 308
P E
Sbjct: 89 PREAGE 94
>pdb|2A1N|A Chain A, Crystal Structure Of Ferrous Dioxygen Complex Of D251n
Cytochrome P450cam
pdb|2A1N|B Chain B, Crystal Structure Of Ferrous Dioxygen Complex Of D251n
Cytochrome P450cam
Length = 415
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|2A1M|A Chain A, Crystal Structure Of Ferrous Dioxygen Complex Of Wild-Type
Cytochrome P450cam
pdb|2A1M|B Chain B, Crystal Structure Of Ferrous Dioxygen Complex Of Wild-Type
Cytochrome P450cam
Length = 415
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|2A1O|A Chain A, Crystal Structure Of Ferrous Dioxygen Complex Of T252a
Cytochrome P450cam
pdb|2A1O|B Chain B, Crystal Structure Of Ferrous Dioxygen Complex Of T252a
Cytochrome P450cam
Length = 415
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|1QMQ|A Chain A, Optical Detection Of Cytochrome P450 By Sensitizer-Linked
Substrates
pdb|1GJM|A Chain A, Covalent Attachment Of An Electroactive Sulphydryl Reagent
In The Active Site Of Cytochrome P450cam
pdb|1K2O|A Chain A, Cytochrome P450cam With Bound
Bis(2,2'-Bipyridine)-(5-Methyl-2-2'-
Bipyridine)-C2-Adamantane Ruthenium (Ii)
pdb|1K2O|B Chain B, Cytochrome P450cam With Bound
Bis(2,2'-Bipyridine)-(5-Methyl-2-2'-
Bipyridine)-C2-Adamantane Ruthenium (Ii)
pdb|1T87|A Chain A, Crystal Structure Of The Ferrous Co-Bound Cytochrome
P450cam (C334a)
pdb|1T87|B Chain B, Crystal Structure Of The Ferrous Co-Bound Cytochrome
P450cam (C334a)
pdb|1T88|A Chain A, Crystal Structure Of The Ferrous Cytochrome P450cam
(C334a)
pdb|1T88|B Chain B, Crystal Structure Of The Ferrous Cytochrome P450cam
(C334a)
pdb|3L61|A Chain A, Crystal Structure Of Substrate-Free P450cam At 200 Mm [k+]
pdb|3L62|A Chain A, Crystal Structure Of Substrate-Free P450cam At Low [k+]
pdb|3L63|A Chain A, Crystal Structure Of Camphor-Bound P450cam At Low [k+]
pdb|3OIA|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac1-C8gluetg-Bio
pdb|3OL5|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized With
A Tethered Substrate Analog 3oh-Adac1-C8-Dans
pdb|3P6M|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac1-C8-Dans
pdb|3P6N|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac1-C8-Dans
pdb|3P6O|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac1-Etg-Dans
pdb|3P6P|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog Adac1-C6-Bio
pdb|3P6Q|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac2-Etg-Boc
pdb|3P6R|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
3oh-Adac1-Etg-Boc
pdb|3P6S|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac2-C8-Dans
pdb|3P6T|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac2-C8-Dans
pdb|3P6U|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac3-C6-Dans
pdb|3P6V|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
3et-Adac1-Etg-Boc
pdb|3P6W|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac3-Etg-Boc
pdb|3P6X|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac3-C8-Dans
pdb|4G3R|A Chain A, Crystal Structure Of Nitrosyl Cytochrome P450cam
pdb|4G3R|B Chain B, Crystal Structure Of Nitrosyl Cytochrome P450cam
Length = 414
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 31 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 88
Query: 303 PSYPNE 308
P E
Sbjct: 89 PREAGE 94
>pdb|3FWF|A Chain A, Ferric Camphor Bound Cytochrome P450cam Containing A
Selenocysteine As The 5th Heme Ligand, Monoclinic
Crystal Form
pdb|3FWF|B Chain B, Ferric Camphor Bound Cytochrome P450cam Containing A
Selenocysteine As The 5th Heme Ligand, Monoclinic
Crystal Form
Length = 405
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 22 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 79
Query: 303 PSYPNE 308
P E
Sbjct: 80 PREAGE 85
>pdb|1P2Y|A Chain A, Crystal Structure Of Cytochrome P450cam In Complex With
(S)- (-)-Nicotine
pdb|1P7R|A Chain A, Crystal Structure Of Reduced, Co-Exposed Complex Of
Cytochrome P450cam With (S)-(-)-Nicotine
Length = 420
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 31 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 88
Query: 303 PSYPNE 308
P E
Sbjct: 89 PREAGE 94
>pdb|2CP4|A Chain A, Crystal Structure Of The Cytochrome P450-Cam Active Site
Mutant Thr252ala
Length = 414
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 31 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 88
Query: 303 PSYPNE 308
P E
Sbjct: 89 PREAGE 94
>pdb|1RE9|A Chain A, Crystal Structure Of Cytochrome P450-cam With A
Fluorescent Probe D-8-ad (adamantane-1-carboxylic
Acid-5-dimethylamino-
Naphthalene-1-sulfonylamino-octyl-amide)
pdb|1YRC|A Chain A, X-ray Crystal Structure Of Hydrogenated Cytochrome P450cam
pdb|1YRD|A Chain A, X-Ray Crystal Structure Of Perdeuterated Cytochrome
P450cam
pdb|2H7Q|A Chain A, Cytochrome P450cam Complexed With Imidazole
pdb|1CP4|A Chain A, Formation, Crystal Structure, And Rearrangement Of A
Cytochrome P450-Cam Iron-Phenyl Complex
pdb|1NOO|A Chain A, Cytochrome P450-Cam Complexed With 5-Exo-Hydroxycamphor
pdb|1PHA|A Chain A, Inhibitor-Induced Conformational Change In Cytochrome
P450- Cam
pdb|1PHB|A Chain A, Inhibitor-Induced Conformational Change In Cytochrome
P450- Cam
pdb|1PHC|A Chain A, Crystal Structure Of Substrate-free Pseudomonas Putida
Cytochrome P450
pdb|1PHD|A Chain A, Crystal Structures Of Metyrapone-And
Phenylimidazole-Inhibited Complexes Of Cytochrome
P450-Cam
pdb|1PHE|A Chain A, Crystal Structures Of Metyrapone-And
Phenylimidazole-Inhibited Complexes Of Cytochrome
P450-Cam
pdb|1PHF|A Chain A, Crystal Structures Of Metyrapone-And Phenylimidazole-
Inhibited Complexes Of Cytochrome P450-Cam
pdb|1PHG|A Chain A, Crystal Structures Of Metyrapone-And Phenylimidazole-
Inhibited Complexes Of Cytochrome P450-Cam
pdb|2CPP|A Chain A, High-Resolution Crystal Structure Of Cytochrome P450-Cam
pdb|3CP4|A Chain A, Crystal Structure Of The Cytochrome P450-Cam Active Site
Mutant Thr252ala
pdb|3CPP|A Chain A, Crystal Structure Of The Carbon
Monoxy-Substrate-Cytochrome P450-Cam Ternary Complex
pdb|4CP4|A Chain A, Crystal Structure Of The Cytochrome P450-Cam Active Site
Mutant Thr252ala
pdb|4CPP|A Chain A, Crystal Structures Of Cytochrome P450-Cam Complexed With
Camphane, Thiocamphor, And Adamantane: Factors
Controlling P450 Substrate Hydroxylation
pdb|5CP4|A Chain A, Cryogenic Structure Of P450cam
pdb|5CPP|A Chain A, The Structural Basis For Substrate-Induced Changes In
Redox Potential And Spin Equilibrium In Cytochrome
P-450(Cam)
pdb|6CPP|A Chain A, Crystal Structures Of Cytochrome P450-Cam Complexed With
Camphane, Thiocamphor, And Adamantane: Factors
Controlling P450 Substrate Hydroxylation
pdb|7CPP|A Chain A, The Structural Basis For Substrate-Induced Changes In
Redox Potential And Spin Equilibrium In Cytochrome
P450(Cam)
pdb|8CPP|A Chain A, Crystal Structures Of Cytochrome P450-Cam Complexed With
Camphane, Thiocamphor, And Adamantane: Factors
Controlling P450 Substrate Hydroxylation
Length = 414
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 31 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 88
Query: 303 PSYPNE 308
P E
Sbjct: 89 PREAGE 94
>pdb|1DZ8|A Chain A, Oxygen Complex Of P450cam From Pseudomonas Putida
pdb|1DZ8|B Chain B, Oxygen Complex Of P450cam From Pseudomonas Putida
pdb|1DZ6|A Chain A, Ferrous P450cam From Pseudomonas Putida
pdb|1DZ6|B Chain B, Ferrous P450cam From Pseudomonas Putida
pdb|1DZ9|A Chain A, Putative Oxo Complex Of P450cam From Pseudomonas Putida
pdb|1DZ9|B Chain B, Putative Oxo Complex Of P450cam From Pseudomonas Putida
pdb|1DZ4|A Chain A, Ferric P450cam From Pseudomonas Putida
pdb|1DZ4|B Chain B, Ferric P450cam From Pseudomonas Putida
pdb|1O76|A Chain A, Cyanide Complex Of P450cam From Pseudomonas Putida
pdb|1O76|B Chain B, Cyanide Complex Of P450cam From Pseudomonas Putida
pdb|1UYU|A Chain A, Xenon Complex Of Wildtype P450cam From Pseudomonas Putida
pdb|1UYU|B Chain B, Xenon Complex Of Wildtype P450cam From Pseudomonas Putida
pdb|1AKD|A Chain A, Cytochrome P450cam From Pseudomonas Putida, Complexed With
1s-Camphor
Length = 414
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 31 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 88
Query: 303 PSYPNE 308
P E
Sbjct: 89 PREAGE 94
>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway
pdb|1FBV|C Chain C, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 154
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 282 MIGPSGTPYHDGLFVFDCIFPPSYPNEPPVV 312
+I P PY G F + FP YP +PP +
Sbjct: 38 LIVPDNPPYDKGAFRIEINFPAEYPFKPPKI 68
>pdb|1T85|A Chain A, Crystal Structure Of The Ferrous Co-Bound Cytochrome
P450cam Mutant (L358pC334A)
pdb|1T86|A Chain A, Crystal Structure Of The Ferrous Cytochrome P450cam Mutant
(L358pC334A)
pdb|1T86|B Chain B, Crystal Structure Of The Ferrous Cytochrome P450cam Mutant
(L358pC334A)
Length = 414
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 31 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 88
Query: 303 PSYPNE 308
P E
Sbjct: 89 PREAGE 94
>pdb|1LWL|A Chain A, Crystal Structure Of Cytochrome P450-Cam With A
Fluorescent Probe D-8-Ad (Adamantane-1-Carboxylic
Acid-5-Dimethylamino-
Naphthalene-1-Sulfonylamino-Octyl-Amide)
pdb|1RF9|A Chain A, Crystal Structure Of Cytochrome P450-Cam With A
Fluorescent Probe D-4-Ad (Adamantane-1-Carboxylic
Acid-5-Dimethylamino-
Naphthalene-1-Sulfonylamino-Butyl-Amide)
Length = 417
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|1IWJ|A Chain A, Putidaredoxin-Binding Stablilizes An Active Conformer Of
Cytochrome P450cam In Its Reduced State; Crystal
Structure Of Mutant(109k) Cytochrome P450cam
Length = 415
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|2ZUI|A Chain A, Crystal Structure Of Camphor-Soaked Ferric Cytochrome
P450cam Mutant (D297n)
Length = 415
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|1IWK|A Chain A, Putidaredoxin-Binding Stablilizes An Active Conformer Of
Cytochrome P450cam In Its Reduced State; Crystal
Structure Of Mutant(112k) Cytochrome P450cam
Length = 415
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SQV|D Chain D, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase,
Nlel, With A Human E2, Ubch7
pdb|3SY2|C Chain C, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
pdb|3SY2|D Chain D, Crystal Structure Of The Salmonella E3 Ubiquitin Ligase
Sopa In Complex With The Human E2 Ubch7
Length = 156
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 268 VRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPVV 312
++V EA + + +++ P PY G F + FP YP +PP +
Sbjct: 27 IQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKI 70
>pdb|3FWI|A Chain A, Ferric Camphor Bound Cytochrome P450cam Containing A
Selenocysteine As The 5th Heme Ligand, Tetragonal
Crystal Form
pdb|3FWJ|A Chain A, Ferric Camphor Bound Cytochrome P450cam Containing A
Selenocysteine As The 5th Heme Ligand, Orthorombic
Crystal Form
Length = 405
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 22 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 79
Query: 303 PSYPNE 308
P E
Sbjct: 80 PREAGE 85
>pdb|2ZUJ|A Chain A, Crystal Structure Of Camphor-Soaked Ferric Cytochrome
P450cam Mutant(D297l)
Length = 415
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|3FWG|A Chain A, Ferric Camphor Bound Cytochrome P450cam, Arg365leu,
Glu366gln, Monoclinic Crystal Form
pdb|3FWG|B Chain B, Ferric Camphor Bound Cytochrome P450cam, Arg365leu,
Glu366gln, Monoclinic Crystal Form
Length = 405
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 22 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 79
Query: 303 PSYPNE 308
P E
Sbjct: 80 PREAGE 85
>pdb|6CP4|A Chain A, P450cam D251n Mutant
Length = 414
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 31 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 88
Query: 303 PSYPNE 308
P E
Sbjct: 89 PREAGE 94
>pdb|2ZUH|A Chain A, Crystal Structure Of Camphor-Soaked Ferric Cytochrome
P450cam Mutant (D297a)
Length = 415
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|2QBL|A Chain A, Crystal Structure Of Ferric G248t Cytochrome P450cam
pdb|2QBM|A Chain A, Crystal Structure Of The P450cam G248t Mutant In The
Cyanide Bound State
Length = 421
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|2FE6|A Chain A, P450cam From Pseudomonas Putida Reconstituted With
Manganic Protoporphyrin Ix
Length = 421
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|1GEK|A Chain A, Structural Characterization Of N-Butyl-Isocyanide
Complexes Of Cytochromes P450nor And P450cam
pdb|1GEM|A Chain A, Structural Characterization Of N-Butyl-Isocyanide
Complexes Of Cytochromes P450nor And P450cam
pdb|1IWI|A Chain A, Putidaredoxin-Binding Stablilizes An Active Conformer Of
Cytochrome P450cam In Its Reduced State; Crystal
Structure Of Cytochrome P450cam
pdb|2ZAW|A Chain A, Crystal Structure Of Ferric Cytochrome P450cam
Reconstituted With 6- Methyl-6-Depropionated Hemin
pdb|2ZAX|A Chain A, Crystal Structure Of Ferric Cytochrome P450cam
pdb|2Z97|A Chain A, Crystal Structure Of Ferric Cytochrome P450cam
Reconstituted With 7- Methyl-7-Depropionated Hemin
pdb|2ZWT|A Chain A, Crystal Structure Of Ferric Cytochrome P450cam
pdb|2ZWU|A Chain A, Crystal Structure Of Camphor Soaked Ferric Cytochrome
P450cam
pdb|2L8M|A Chain A, Reduced And Co-Bound Cytochrome P450cam (Cyp101a1)
Length = 415
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
pdb|3UIP|A Chain A, Complex Between Human Rangap1-Sumo1, Ubc9 And The Ir1
Domain From Ranbp2 Containing Ir2 Motif Ii
Length = 158
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPP 310
G GTP+ GLF +F YP+ PP
Sbjct: 47 GKKGTPWEGGLFKLRMLFKDDYPSSPP 73
>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The
Ubiquitin- Conjugating System In Caenorhabditis Elegans
Length = 164
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 280 AVMIGPSGTPYHDGLFVFDCIFPPSYPNEPP 310
++IGP T Y G F FP YP +PP
Sbjct: 38 VLVIGPPDTLYEGGFFKAILDFPRDYPQKPP 68
>pdb|2QBN|A Chain A, Crystal Structure Of Ferric G248v Cytochrome P450cam
pdb|2QBO|A Chain A, Crystal Structure Of The P450cam G248v Mutant In The
Cyanide Bound State
Length = 421
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|1GEB|A Chain A, X-Ray Crystal Structure And Catalytic Properties Of
Thr252ile Mutant Of Cytochrome P450cam
Length = 415
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 32 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 89
Query: 303 PSYPNE 308
P E
Sbjct: 90 PREAGE 95
>pdb|2LQD|A Chain A, Reduced And Co-Bound Cytochrome P450cam (Cyp101a1)
Length = 405
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 22 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 79
Query: 303 PSYPNE 308
P E
Sbjct: 80 PREAGE 85
>pdb|2FER|A Chain A, P450cam From Pseudomonas Putida Reconstituted With
Manganic Protoporphyrin Ix
pdb|2FEU|A Chain A, P450cam From Pseudomonas Putida Reconstituted With
Manganic Protoporphyrin Ix
pdb|2FEU|B Chain B, P450cam From Pseudomonas Putida Reconstituted With
Manganic Protoporphyrin Ix
Length = 411
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
Query: 244 PKNWAKKIQEEWKIL-EKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFP 302
P N + +QE W +L E N+PD ++ R R +I + Y F +C F
Sbjct: 22 PSNLSAGVQEAWAVLQESNVPDLVWTRCNGGHWIATRGQLIREAYEDYRH--FSSECPFI 79
Query: 303 PSYPNE 308
P E
Sbjct: 80 PREAGE 85
>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a
Length = 161
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPP 310
G GTP+ GLF +F YP+ PP
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPP 76
>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1
Length = 158
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPP 310
G GTP+ GLF +F YP+ PP
Sbjct: 47 GKKGTPWEGGLFKLRMLFKDDYPSSPP 73
>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9
pdb|1U9B|A Chain A, MurineHUMAN UBIQUITIN-Conjugating Enzyme Ubc9
Length = 160
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPP 310
G GTP+ GLF +F YP+ PP
Sbjct: 49 GKKGTPWEGGLFKLRMLFKDDYPSSPP 75
>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
pdb|1KPS|C Chain C, Structural Basis For E2-Mediated Sumo Conjugation Revealed
By A Complex Between Ubiquitin Conjugating Enzyme Ubc9
And Rangap1
Length = 159
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPP 310
G GTP+ GLF +F YP+ PP
Sbjct: 48 GKKGTPWEGGLFKLRMLFKDDYPSSPP 74
>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1,
Rangap1 And Nup358RANBP2
pdb|2PX9|B Chain B, The Intrinsic Affinity Between E2 And The Cys Domain Of E1
In Ubiquitin-Like Modifications
pdb|2VRR|A Chain A, Structure Of Sumo Modified Ubc9
pdb|2XWU|A Chain A, Crystal Structure Of Importin 13 - Ubc9 Complex
pdb|3UIN|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1
Domain From Ranbp2
Length = 158
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPP 310
G GTP+ GLF +F YP+ PP
Sbjct: 47 GKKGTPWEGGLFKLRMLFKDDYPSSPP 73
>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q
Length = 161
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPP 310
G GTP+ GLF +F YP+ PP
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPP 76
>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|2O25|D Chain D, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With
Sumo-1- Conjugating Enzyme Ubc9
pdb|1A3S|A Chain A, Human Ubc9
Length = 160
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPP 310
G GTP+ GLF +F YP+ PP
Sbjct: 49 GKKGTPWEGGLFKLRMLFKDDYPSSPP 75
>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9
pdb|2PE6|A Chain A, Non-Covalent Complex Between Human Sumo-1 And Human Ubc9
Length = 161
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPP 310
G GTP+ GLF +F YP+ PP
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPP 76
>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a
Length = 161
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPP 310
G GTP+ GLF +F YP+ PP
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPP 76
>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s
Length = 161
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPP 310
G GTP+ GLF +F YP+ PP
Sbjct: 50 GKKGTPWEGGLFKLRMLFKDDYPSSPP 76
>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex
pdb|3A4S|B Chain B, The Crystal Structure Of The Sld2:ubc9 Complex
Length = 163
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 284 GPSGTPYHDGLFVFDCIFPPSYPNEPP 310
G GTP+ GLF +F YP+ PP
Sbjct: 52 GKKGTPWEGGLFKLRMLFKDDYPSSPP 78
>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The
Destruction Of Mitotic Cyclins
Length = 156
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 280 AVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPVVFIT 315
A + GP T Y + FP YP +PPVV T
Sbjct: 43 ATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFT 78
>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 180
Score = 28.1 bits (61), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%)
Query: 245 KNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPS 304
K A +++ + I E NLP T + + L ++I P Y G FVF
Sbjct: 23 KASAAQLRIQKDINELNLPKTCDISFSDPDDLLNFKLVICPDEGFYKSGKFVFSFKVGQG 82
Query: 305 YPNEPPVV 312
YP++PP V
Sbjct: 83 YPHDPPKV 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,431,670
Number of Sequences: 62578
Number of extensions: 246114
Number of successful extensions: 560
Number of sequences better than 100.0: 130
Number of HSP's better than 100.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 466
Number of HSP's gapped (non-prelim): 130
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)