Query 020773
Match_columns 321
No_of_seqs 254 out of 1289
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 05:02:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020773.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020773hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0417 Ubiquitin-protein liga 99.9 5.3E-22 1.1E-26 173.1 8.4 74 247-320 2-75 (148)
2 COG5078 Ubiquitin-protein liga 99.9 3.5E-21 7.7E-26 169.0 10.9 75 246-320 5-80 (153)
3 PTZ00390 ubiquitin-conjugating 99.8 3.4E-20 7.3E-25 161.4 10.6 74 247-320 3-76 (152)
4 PLN00172 ubiquitin conjugating 99.8 4.8E-20 1E-24 159.3 10.5 74 247-320 2-75 (147)
5 KOG0419 Ubiquitin-protein liga 99.8 8.1E-20 1.8E-24 157.5 8.5 78 243-320 1-78 (152)
6 KOG0894 Ubiquitin-protein liga 99.8 1.4E-19 3.1E-24 166.3 8.9 78 243-320 2-79 (244)
7 PF00179 UQ_con: Ubiquitin-con 99.8 1.2E-18 2.6E-23 146.9 8.1 71 250-320 1-72 (140)
8 cd00195 UBCc Ubiquitin-conjuga 99.7 9.4E-18 2E-22 141.9 10.1 72 249-320 2-73 (141)
9 KOG0895 Ubiquitin-conjugating 99.7 3.6E-18 7.7E-23 182.5 4.6 100 219-320 826-925 (1101)
10 KOG0426 Ubiquitin-protein liga 99.7 2.4E-17 5.2E-22 142.7 8.0 78 243-320 1-79 (165)
11 KOG0418 Ubiquitin-protein liga 99.7 3.2E-17 6.9E-22 148.1 8.4 74 247-320 4-80 (200)
12 smart00212 UBCc Ubiquitin-conj 99.7 6.7E-17 1.5E-21 137.2 9.4 72 249-320 1-73 (145)
13 KOG0421 Ubiquitin-protein liga 99.6 6.2E-16 1.3E-20 135.5 9.1 77 244-320 27-103 (175)
14 KOG0425 Ubiquitin-protein liga 99.6 9.9E-16 2.1E-20 135.3 8.8 75 246-320 5-80 (171)
15 KOG0424 Ubiquitin-protein liga 99.6 3.6E-15 7.8E-20 130.3 8.4 78 243-320 1-83 (158)
16 KOG0895 Ubiquitin-conjugating 99.6 7.2E-15 1.6E-19 157.5 9.2 103 217-320 254-357 (1101)
17 KOG0428 Non-canonical ubiquiti 99.5 1.3E-14 2.9E-19 136.1 7.7 77 243-320 8-84 (314)
18 KOG0422 Ubiquitin-protein liga 99.4 1.5E-13 3.2E-18 119.8 6.5 74 246-320 2-76 (153)
19 KOG0427 Ubiquitin conjugating 99.4 3.4E-13 7.4E-18 116.9 8.3 75 242-317 11-85 (161)
20 KOG0423 Ubiquitin-protein liga 99.4 2.2E-13 4.7E-18 122.7 4.1 79 242-320 6-84 (223)
21 KOG0416 Ubiquitin-protein liga 99.2 2.1E-11 4.6E-16 109.4 8.0 70 248-320 5-74 (189)
22 KOG0420 Ubiquitin-protein liga 98.8 7.4E-09 1.6E-13 93.2 7.3 76 242-320 24-103 (184)
23 KOG0896 Ubiquitin-conjugating 98.4 2.9E-07 6.3E-12 80.1 5.4 72 248-319 7-82 (138)
24 KOG0429 Ubiquitin-conjugating 98.2 3.7E-06 8.1E-11 78.7 8.3 71 249-320 22-94 (258)
25 PF05773 RWD: RWD domain; Int 95.9 0.023 4.9E-07 45.0 6.0 70 248-318 3-74 (113)
26 smart00591 RWD domain in RING 95.3 0.13 2.7E-06 40.6 8.1 30 291-320 39-69 (107)
27 PF08694 UFC1: Ubiquitin-fold 88.3 0.26 5.5E-06 44.2 1.6 66 243-314 21-96 (161)
28 PF14462 Prok-E2_E: Prokaryoti 80.8 5 0.00011 34.8 6.1 55 265-320 13-69 (122)
29 PF14461 Prok-E2_B: Prokaryoti 77.3 2.7 5.8E-05 35.8 3.4 26 291-316 34-59 (133)
30 PF05743 UEV: UEV domain; Int 72.0 11 0.00023 32.1 5.6 37 275-315 32-70 (121)
31 KOG3357 Uncharacterized conser 70.8 5.9 0.00013 35.3 3.9 67 242-314 23-99 (167)
32 KOG0309 Conserved WD40 repeat- 52.9 51 0.0011 37.0 7.7 69 247-317 421-491 (1081)
33 cd00421 intradiol_dioxygenase 52.9 19 0.00041 31.2 3.8 26 291-316 64-90 (146)
34 cd03457 intradiol_dioxygenase_ 49.4 22 0.00048 32.6 3.9 26 291-316 85-110 (188)
35 cd03459 3,4-PCD Protocatechuat 40.2 38 0.00083 30.2 3.9 25 292-316 72-101 (158)
36 KOG4018 Uncharacterized conser 34.9 84 0.0018 30.0 5.3 62 251-315 7-71 (215)
37 PF09765 WD-3: WD-repeat regio 33.1 87 0.0019 30.7 5.4 60 245-313 98-157 (291)
38 TIGR02423 protocat_alph protoc 30.0 65 0.0014 29.7 3.7 26 291-316 95-125 (193)
39 cd03463 3,4-PCD_alpha Protocat 28.7 72 0.0016 29.3 3.8 25 292-316 92-121 (185)
40 PF11519 DUF3222: Protein of u 26.2 21 0.00045 28.4 -0.2 10 140-149 39-48 (74)
41 PF06113 BRE: Brain and reprod 23.6 98 0.0021 31.2 3.9 25 292-316 305-329 (333)
42 TIGR02439 catechol_proteo cate 23.1 99 0.0021 30.4 3.8 25 291-315 179-221 (285)
43 cd03461 1,2-HQD Hydroxyquinol 20.9 1.2E+02 0.0025 29.8 3.8 25 291-315 171-213 (277)
No 1
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=5.3e-22 Score=173.09 Aligned_cols=74 Identities=27% Similarity=0.478 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEEcCCCC
Q 020773 247 WAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPVVFITIQGAS 320 (321)
Q Consensus 247 a~KRLqKElk~Lqkd~P~gI~V~p~EdnL~~WravI~GPegTPYEGGlF~fdI~FP~dYP~sPPkVrFlT~glr 320 (321)
+.+||.||++.|++++|+||.+.+.++|++.|+|+|.||.+||||||.|++.|.||++||++||+|+|+|+.+|
T Consensus 2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyH 75 (148)
T KOG0417|consen 2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYH 75 (148)
T ss_pred cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeeccccc
Confidence 35699999999999999999999999999999999999999999999999999999999999999999999887
No 2
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=3.5e-21 Score=169.02 Aligned_cols=75 Identities=31% Similarity=0.490 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEecCC-CcceEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEEcCCCC
Q 020773 246 NWAKKIQEEWKILEKNLPDTIFVRVCEA-RMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPVVFITIQGAS 320 (321)
Q Consensus 246 ~a~KRLqKElk~Lqkd~P~gI~V~p~Ed-nL~~WravI~GPegTPYEGGlF~fdI~FP~dYP~sPPkVrFlT~glr 320 (321)
.+.+||++|++.|+++++++|.+.+..+ |++.|.|+|.||++||||||.|++.|.||++||++||+|+|.|+.+|
T Consensus 5 ~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~H 80 (153)
T COG5078 5 SALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFH 80 (153)
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcC
Confidence 4899999999999999999999998887 99999999999999999999999999999999999999999999987
No 3
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=99.82 E-value=3.4e-20 Score=161.37 Aligned_cols=74 Identities=28% Similarity=0.500 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEEcCCCC
Q 020773 247 WAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPVVFITIQGAS 320 (321)
Q Consensus 247 a~KRLqKElk~Lqkd~P~gI~V~p~EdnL~~WravI~GPegTPYEGGlF~fdI~FP~dYP~sPPkVrFlT~glr 320 (321)
+.+||++|+++|++++++||.+.+.++|+..|+|+|.||++|||+||.|+|+|.||++||++||+|+|.|+.+|
T Consensus 3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~H 76 (152)
T PTZ00390 3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYH 76 (152)
T ss_pred HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCee
Confidence 57999999999999999999999999999999999999999999999999999999999999999999998766
No 4
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=99.82 E-value=4.8e-20 Score=159.30 Aligned_cols=74 Identities=35% Similarity=0.570 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEEcCCCC
Q 020773 247 WAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPVVFITIQGAS 320 (321)
Q Consensus 247 a~KRLqKElk~Lqkd~P~gI~V~p~EdnL~~WravI~GPegTPYEGGlF~fdI~FP~dYP~sPPkVrFlT~glr 320 (321)
+.+||+||+++|++++++++.+.+.++|+..|+|+|.||++|||+||.|+|.|.||++||++||+|+|.|+.+|
T Consensus 2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 75 (147)
T PLN00172 2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYH 75 (147)
T ss_pred hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCccc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999998776
No 5
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=8.1e-20 Score=157.53 Aligned_cols=78 Identities=26% Similarity=0.453 Sum_probs=75.2
Q ss_pred CChHHHHHHHHHHHHHHhCCCCceEEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEEcCCCC
Q 020773 243 PPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPVVFITIQGAS 320 (321)
Q Consensus 243 ~ss~a~KRLqKElk~Lqkd~P~gI~V~p~EdnL~~WravI~GPegTPYEGGlF~fdI~FP~dYP~sPPkVrFlT~glr 320 (321)
|+..+.+||+++++.|++++|.||+..+.++|++.|.|+|.||++|||+||+|.+.|.|+++||.+||.|+|+|..+|
T Consensus 1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFH 78 (152)
T KOG0419|consen 1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFH 78 (152)
T ss_pred CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccC
Confidence 456789999999999999999999999999999999999999999999999999999999999999999999999877
No 6
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.4e-19 Score=166.31 Aligned_cols=78 Identities=29% Similarity=0.500 Sum_probs=76.1
Q ss_pred CChHHHHHHHHHHHHHHhCCCCceEEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEEcCCCC
Q 020773 243 PPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPVVFITIQGAS 320 (321)
Q Consensus 243 ~ss~a~KRLqKElk~Lqkd~P~gI~V~p~EdnL~~WravI~GPegTPYEGGlF~fdI~FP~dYP~sPPkVrFlT~glr 320 (321)
+++.+.+||+|||+.|+++|+++|.+++.++|+.+|+.+|.||++|||+||.|+..|.||++||++||.|+++|+++|
T Consensus 2 a~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGR 79 (244)
T KOG0894|consen 2 ASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGR 79 (244)
T ss_pred cchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCc
Confidence 467899999999999999999999999999999999999999999999999999999999999999999999999998
No 7
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=99.76 E-value=1.2e-18 Score=146.93 Aligned_cols=71 Identities=38% Similarity=0.636 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhCCCCceEEEecCC-CcceEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEEcCCCC
Q 020773 250 KIQEEWKILEKNLPDTIFVRVCEA-RMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPVVFITIQGAS 320 (321)
Q Consensus 250 RLqKElk~Lqkd~P~gI~V~p~Ed-nL~~WravI~GPegTPYEGGlF~fdI~FP~dYP~sPPkVrFlT~glr 320 (321)
||++|++.|++.++.||.+.+.++ ++..|+++|.||.+|||+||.|+|.|.||.+||++||+|+|.|+..|
T Consensus 1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~H 72 (140)
T PF00179_consen 1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFH 72 (140)
T ss_dssp HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SB
T ss_pred CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccc
Confidence 899999999999999999999886 99999999999999999999999999999999999999999997665
No 8
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.74 E-value=9.4e-18 Score=141.87 Aligned_cols=72 Identities=33% Similarity=0.553 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHhCCCCceEEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEEcCCCC
Q 020773 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPVVFITIQGAS 320 (321)
Q Consensus 249 KRLqKElk~Lqkd~P~gI~V~p~EdnL~~WravI~GPegTPYEGGlF~fdI~FP~dYP~sPPkVrFlT~glr 320 (321)
+||++|+++|++.++.||.+.+.++++..|+++|.||++|||+||.|+|.|.||++||++||.|+|.|..+|
T Consensus 2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~H 73 (141)
T cd00195 2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYH 73 (141)
T ss_pred chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCccc
Confidence 799999999999999999999999999999999999999999999999999999999999999999988765
No 9
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=3.6e-18 Score=182.48 Aligned_cols=100 Identities=50% Similarity=0.884 Sum_probs=91.7
Q ss_pred cceecccCCCCCcccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCceEEEecCCCcceEEEEEeCCCCCCCCCCEEEEE
Q 020773 219 KQFDTVDDFSDHHYNRMGFLGEEKPPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFD 298 (321)
Q Consensus 219 kqFd~V~~~sDHhf~~~~~~~~~~~ss~a~KRLqKElk~Lqkd~P~gI~V~p~EdnL~~WravI~GPegTPYEGGlF~fd 298 (321)
++|+++.++++|||.......+ ..+.|++..+.||+.|..++|.||+||.+|++|++++|+|+||.||||++|+|+|+
T Consensus 826 ~~F~v~~~~~~~h~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd 903 (1101)
T KOG0895|consen 826 LRFDVNYDYMDHHKNANDGNKA--AEAQWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFD 903 (1101)
T ss_pred ccccccCchHHHhhhhcccccH--HHHHHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEE
Confidence 6899999999999976543322 33389999999999999999999999999999999999999999999999999999
Q ss_pred EECCCCCCCCCCeEEEEcCCCC
Q 020773 299 CIFPPSYPNEPPVVFITIQGAS 320 (321)
Q Consensus 299 I~FP~dYP~sPPkVrFlT~glr 320 (321)
|.||.+||..||.|+++|+|+|
T Consensus 904 ~~~~~~yp~~pp~~~~~s~~~r 925 (1101)
T KOG0895|consen 904 FQFPQDYPSSPPLVHYHSGGVR 925 (1101)
T ss_pred eecCCCCCCCCCceEeecCcee
Confidence 9999999999999999999988
No 10
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=2.4e-17 Score=142.67 Aligned_cols=78 Identities=26% Similarity=0.364 Sum_probs=72.2
Q ss_pred CChHHHHHHHHHHHHHHhCCCCceEEEe-cCCCcceEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEEcCCCC
Q 020773 243 PPKNWAKKIQEEWKILEKNLPDTIFVRV-CEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPVVFITIQGAS 320 (321)
Q Consensus 243 ~ss~a~KRLqKElk~Lqkd~P~gI~V~p-~EdnL~~WravI~GPegTPYEGGlF~fdI~FP~dYP~sPPkVrFlT~glr 320 (321)
|...++|||++|+++|..++|+||.+.+ .++|++.|.|+|.||++|||+||+|-.++.||.+||..||+++|.-..+|
T Consensus 1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fH 79 (165)
T KOG0426|consen 1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFH 79 (165)
T ss_pred CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeeccccc
Confidence 3567899999999999999999999886 57899999999999999999999999999999999999999999876665
No 11
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3.2e-17 Score=148.08 Aligned_cols=74 Identities=27% Similarity=0.460 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHhCC---CCceEEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEEcCCCC
Q 020773 247 WAKKIQEEWKILEKNL---PDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPVVFITIQGAS 320 (321)
Q Consensus 247 a~KRLqKElk~Lqkd~---P~gI~V~p~EdnL~~WravI~GPegTPYEGGlF~fdI~FP~dYP~sPPkVrFlT~glr 320 (321)
+.+||++|++++..++ -.||.+....+++..+++.|.||++||||||.|.++|.||.+|||+||+|+|.|+..|
T Consensus 4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwH 80 (200)
T KOG0418|consen 4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWH 80 (200)
T ss_pred HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeec
Confidence 7899999999999887 5799999999999999999999999999999999999999999999999999999876
No 12
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.70 E-value=6.7e-17 Score=137.24 Aligned_cols=72 Identities=32% Similarity=0.564 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhCCCCceEEEecCC-CcceEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEEcCCCC
Q 020773 249 KKIQEEWKILEKNLPDTIFVRVCEA-RMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPVVFITIQGAS 320 (321)
Q Consensus 249 KRLqKElk~Lqkd~P~gI~V~p~Ed-nL~~WravI~GPegTPYEGGlF~fdI~FP~dYP~sPPkVrFlT~glr 320 (321)
+||++|++.|++.+++|+.+.+.++ ++..|+++|.||.+|||+||.|+|.|.||++||++||+|+|.|+..|
T Consensus 1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~H 73 (145)
T smart00212 1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYH 73 (145)
T ss_pred ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceE
Confidence 5999999999999999999988776 99999999999999999999999999999999999999999998654
No 13
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=6.2e-16 Score=135.45 Aligned_cols=77 Identities=21% Similarity=0.228 Sum_probs=74.3
Q ss_pred ChHHHHHHHHHHHHHHhCCCCceEEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEEcCCCC
Q 020773 244 PKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPVVFITIQGAS 320 (321)
Q Consensus 244 ss~a~KRLqKElk~Lqkd~P~gI~V~p~EdnL~~WravI~GPegTPYEGGlF~fdI~FP~dYP~sPPkVrFlT~glr 320 (321)
.....|||++|+..|....-+||.+.|.++|++.|..+|.||.+|+|+|-.|++.+.||.+||+.||.|+|+|+++|
T Consensus 27 ~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~H 103 (175)
T KOG0421|consen 27 GHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFH 103 (175)
T ss_pred CchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccC
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999987
No 14
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=9.9e-16 Score=135.33 Aligned_cols=75 Identities=23% Similarity=0.352 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEEecC-CCcceEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEEcCCCC
Q 020773 246 NWAKKIQEEWKILEKNLPDTIFVRVCE-ARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPVVFITIQGAS 320 (321)
Q Consensus 246 ~a~KRLqKElk~Lqkd~P~gI~V~p~E-dnL~~WravI~GPegTPYEGGlF~fdI~FP~dYP~sPPkVrFlT~glr 320 (321)
.+..-|+++|+.|++.+.+|+.+.+.+ .|++.|.+.|+||++|+||||.|...+.||.+||++||+++|+|...|
T Consensus 5 ~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwH 80 (171)
T KOG0425|consen 5 QASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWH 80 (171)
T ss_pred hhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcC
Confidence 367788999999999999999998654 599999999999999999999999999999999999999999999876
No 15
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=3.6e-15 Score=130.30 Aligned_cols=78 Identities=22% Similarity=0.353 Sum_probs=71.6
Q ss_pred CChHHHHHHHHHHHHHHhCCCCceEEEecC-----CCcceEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEEcC
Q 020773 243 PPKNWAKKIQEEWKILEKNLPDTIFVRVCE-----ARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPVVFITIQ 317 (321)
Q Consensus 243 ~ss~a~KRLqKElk~Lqkd~P~gI~V~p~E-----dnL~~WravI~GPegTPYEGGlF~fdI~FP~dYP~sPPkVrFlT~ 317 (321)
|+..++.||+.|-+.|.++.|-|+++.+.. .|+..|.|.|.||.|||||||+|.+.|.||.+||.+||+|.|.++
T Consensus 1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p 80 (158)
T KOG0424|consen 1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP 80 (158)
T ss_pred CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence 355779999999999999999999998754 379999999999999999999999999999999999999999988
Q ss_pred CCC
Q 020773 318 GAS 320 (321)
Q Consensus 318 glr 320 (321)
-.|
T Consensus 81 l~H 83 (158)
T KOG0424|consen 81 LFH 83 (158)
T ss_pred CcC
Confidence 665
No 16
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=7.2e-15 Score=157.51 Aligned_cols=103 Identities=48% Similarity=0.847 Sum_probs=97.5
Q ss_pred CCcceecccCCCCCcccccCCCCCCCCChHHHHHHHHHHHHHHhCCCCceEEEecCCCcceEEEEEeCCCCCCCCCCEEE
Q 020773 217 GFKQFDTVDDFSDHHYNRMGFLGEEKPPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFV 296 (321)
Q Consensus 217 ~fkqFd~V~~~sDHhf~~~~~~~~~~~ss~a~KRLqKElk~Lqkd~P~gI~V~p~EdnL~~WravI~GPegTPYEGGlF~ 296 (321)
.|..|..+++.++||+...+.... +.++.+.+|+++|++.|.+++|++|++++.+.+|+..+++|.||.||||++|+|.
T Consensus 254 ~i~kf~~~ed~~~~~~~~k~~~~k-~hs~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~ 332 (1101)
T KOG0895|consen 254 LIPKFKLVEDKSFHHYAKKGKSSK-PHSKNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFL 332 (1101)
T ss_pred chhhhccccccccccccccCCCCC-ccchhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCcee
Confidence 678999999999999998877765 7889999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCCCCCCCeEEEEcC-CCC
Q 020773 297 FDCIFPPSYPNEPPVVFITIQ-GAS 320 (321)
Q Consensus 297 fdI~FP~dYP~sPPkVrFlT~-glr 320 (321)
|+|.||..||..||.|+|+|. ++|
T Consensus 333 Fdiq~P~~yPa~pp~v~~lt~~~~R 357 (1101)
T KOG0895|consen 333 FDIQFPDTYPAVPPHVKYLTGGGVR 357 (1101)
T ss_pred eEeecCCCCCCCCceeEEeecccee
Confidence 999999999999999999999 554
No 17
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=1.3e-14 Score=136.13 Aligned_cols=77 Identities=18% Similarity=0.345 Sum_probs=73.1
Q ss_pred CChHHHHHHHHHHHHHHhCCCCceEEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEEcCCCC
Q 020773 243 PPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPVVFITIQGAS 320 (321)
Q Consensus 243 ~ss~a~KRLqKElk~Lqkd~P~gI~V~p~EdnL~~WravI~GPegTPYEGGlF~fdI~FP~dYP~sPPkVrFlT~glr 320 (321)
....+.|||+||.++|+ ++...+...+.|+|+++|+.+|.||.+|-|+||+|+.+|.||.+||++||.+-.+|+++|
T Consensus 8 ~KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGR 84 (314)
T KOG0428|consen 8 LKNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGR 84 (314)
T ss_pred ccCHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCc
Confidence 34578999999999999 788888999999999999999999999999999999999999999999999999999998
No 18
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.44 E-value=1.5e-13 Score=119.76 Aligned_cols=74 Identities=26% Similarity=0.433 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHHhCCCCce-EEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEEcCCCC
Q 020773 246 NWAKKIQEEWKILEKNLPDTI-FVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPVVFITIQGAS 320 (321)
Q Consensus 246 ~a~KRLqKElk~Lqkd~P~gI-~V~p~EdnL~~WravI~GPegTPYEGGlF~fdI~FP~dYP~sPPkVrFlT~glr 320 (321)
.+.+||+||+..|+++....+ .++..+.+++.|.++|+ |.+-||..|.|++.|.||.+|||+||+|+|.|..+|
T Consensus 2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYH 76 (153)
T KOG0422|consen 2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYH 76 (153)
T ss_pred chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeecc
Confidence 467999999999999988776 45678899999999999 999999999999999999999999999999998876
No 19
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=3.4e-13 Score=116.89 Aligned_cols=75 Identities=23% Similarity=0.345 Sum_probs=70.6
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCceEEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEEcC
Q 020773 242 KPPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPVVFITIQ 317 (321)
Q Consensus 242 ~~ss~a~KRLqKElk~Lqkd~P~gI~V~p~EdnL~~WravI~GPegTPYEGGlF~fdI~FP~dYP~sPPkVrFlT~ 317 (321)
.++..+.+|||||+.+|+.++|.|+.++ ..++|..|.+-+.|.+||.|+|.+|.+.+.||+.||+..|+|-|..+
T Consensus 11 ~ls~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~ 85 (161)
T KOG0427|consen 11 ALSKIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGP 85 (161)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecC
Confidence 4677899999999999999999999988 56799999999999999999999999999999999999999999865
No 20
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.2e-13 Score=122.67 Aligned_cols=79 Identities=32% Similarity=0.525 Sum_probs=75.7
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCceEEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEEcCCCC
Q 020773 242 KPPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPVVFITIQGAS 320 (321)
Q Consensus 242 ~~ss~a~KRLqKElk~Lqkd~P~gI~V~p~EdnL~~WravI~GPegTPYEGGlF~fdI~FP~dYP~sPPkVrFlT~glr 320 (321)
..+...++.|+||++.|...+|.||.|.+.++++..+.+.|.||.||||++|+|++.+.+..+||.+||+-+|+|+.+|
T Consensus 6 nlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFH 84 (223)
T KOG0423|consen 6 NLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFH 84 (223)
T ss_pred CCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeecc
Confidence 4567789999999999999999999999999999999999999999999999999999999999999999999999887
No 21
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=2.1e-11 Score=109.37 Aligned_cols=70 Identities=19% Similarity=0.328 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHhCCCCceEEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEEcCCCC
Q 020773 248 AKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPVVFITIQGAS 320 (321)
Q Consensus 248 ~KRLqKElk~Lqkd~P~gI~V~p~EdnL~~WravI~GPegTPYEGGlF~fdI~FP~dYP~sPPkVrFlT~glr 320 (321)
.|||..+...|... +..|...++.|.++.+.+.||.+|||+||.|+++|.+|.+||++.|.|.|+|+.+|
T Consensus 5 ~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfH 74 (189)
T KOG0416|consen 5 KRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFH 74 (189)
T ss_pred ccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccC
Confidence 47888888888654 67899999999999999999999999999999999999999999999999999987
No 22
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=7.4e-09 Score=93.20 Aligned_cols=76 Identities=24% Similarity=0.341 Sum_probs=60.1
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCceEEEe-c-CCCcc--eEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEEcC
Q 020773 242 KPPKNWAKKIQEEWKILEKNLPDTIFVRV-C-EARME--LLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPVVFITIQ 317 (321)
Q Consensus 242 ~~ss~a~KRLqKElk~Lqkd~P~gI~V~p-~-EdnL~--~WravI~GPegTPYEGGlF~fdI~FP~dYP~sPPkVrFlT~ 317 (321)
...+.++-||++++.+| ++|+++.+.. . .+++. .+.++|. |.++.|.||.|+|.+.+|+.||+.||+|+|+|+
T Consensus 24 ~~~s~a~lrl~~di~el--nLp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltk 100 (184)
T KOG0420|consen 24 KKVSAALLRLKKDILEL--NLPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTK 100 (184)
T ss_pred ccccHHHHHHHhhhhhc--cCCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeec
Confidence 34556677777776655 6888886532 2 34444 4888888 999999999999999999999999999999999
Q ss_pred CCC
Q 020773 318 GAS 320 (321)
Q Consensus 318 glr 320 (321)
-+|
T Consensus 101 V~H 103 (184)
T KOG0420|consen 101 VYH 103 (184)
T ss_pred ccc
Confidence 876
No 23
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=2.9e-07 Score=80.08 Aligned_cols=72 Identities=22% Similarity=0.357 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHhCCCCceEE-EecC-CC--cceEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEEEEcCCC
Q 020773 248 AKKIQEEWKILEKNLPDTIFV-RVCE-AR--MELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPVVFITIQGA 319 (321)
Q Consensus 248 ~KRLqKElk~Lqkd~P~gI~V-~p~E-dn--L~~WravI~GPegTPYEGGlF~fdI~FP~dYP~sPPkVrFlT~gl 319 (321)
--||.+|+..=++-.-++..- .+.. ++ |..|.+.|+||+.|+||+.+|.+.|.+.++||-.||.|+|.|+.-
T Consensus 7 nfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkin 82 (138)
T KOG0896|consen 7 NFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKIN 82 (138)
T ss_pred chhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEee
Confidence 346888887776655444322 2222 22 678999999999999999999999999999999999999998753
No 24
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=3.7e-06 Score=78.72 Aligned_cols=71 Identities=23% Similarity=0.358 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHhCCCCceEEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEECCCCCCCC--CCeEEEEcCCCC
Q 020773 249 KKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNE--PPVVFITIQGAS 320 (321)
Q Consensus 249 KRLqKElk~Lqkd~P~gI~V~p~EdnL~~WravI~GPegTPYEGGlF~fdI~FP~dYP~s--PPkVrFlT~glr 320 (321)
-.|..|+..+.+.+-+||+|.|.-.+-++|.++|.+-.| .|.||.|+|.|.+|.+||.. -|+|.|.+.-+|
T Consensus 22 y~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfH 94 (258)
T KOG0429|consen 22 YALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFH 94 (258)
T ss_pred HHHHHHHHHHHhccCCceEEcccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeeccccc
Confidence 356677777788888999999999999999999996555 89999999999999999944 699999887554
No 25
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=95.90 E-value=0.023 Score=44.97 Aligned_cols=70 Identities=19% Similarity=0.286 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhCCCCceEEEecCCCcceEEEEEeC--CCCCCCCCCEEEEEEECCCCCCCCCCeEEEEcCC
Q 020773 248 AKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIG--PSGTPYHDGLFVFDCIFPPSYPNEPPVVFITIQG 318 (321)
Q Consensus 248 ~KRLqKElk~Lqkd~P~gI~V~p~EdnL~~WravI~G--PegTPYEGGlF~fdI~FP~dYP~sPPkVrFlT~g 318 (321)
..+...|+..|+.--+..+ +.........+++.+.+ ...+.-....+.+.|.||+.||..||.|...+..
T Consensus 3 ~e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~ 74 (113)
T PF05773_consen 3 EEQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK 74 (113)
T ss_dssp HHHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred HHHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence 3567888888887544444 22233344556666632 2344445678999999999999999999887654
No 26
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=95.28 E-value=0.13 Score=40.55 Aligned_cols=30 Identities=23% Similarity=0.444 Sum_probs=24.7
Q ss_pred CCCEEEEEEECCCCCCCCCCeEEEEcC-CCC
Q 020773 291 HDGLFVFDCIFPPSYPNEPPVVFITIQ-GAS 320 (321)
Q Consensus 291 EGGlF~fdI~FP~dYP~sPPkVrFlT~-glr 320 (321)
+.-.+.+.|.||.+||..+|.|.+.+. +++
T Consensus 39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~~~l~ 69 (107)
T smart00591 39 QYVSLTLQVKLPENYPDEAPPISLLNSEGLS 69 (107)
T ss_pred cceEEEEEEECCCCCCCCCCCeEEECCCCCC
Confidence 445689999999999999999998754 453
No 27
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=88.27 E-value=0.26 Score=44.22 Aligned_cols=66 Identities=20% Similarity=0.332 Sum_probs=30.4
Q ss_pred CChHHHHHHHHHHHHHHhCCCCceEEEecCCCcceEEEEEeCCCCCCCCC--------CE--EEEEEECCCCCCCCCCeE
Q 020773 243 PPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHD--------GL--FVFDCIFPPSYPNEPPVV 312 (321)
Q Consensus 243 ~ss~a~KRLqKElk~Lqkd~P~gI~V~p~EdnL~~WravI~GPegTPYEG--------Gl--F~fdI~FP~dYP~sPPkV 312 (321)
-...|..||..|++.|-+- |....++=..|.-+=.-++||-|.| -. |.|.+.+|..||..||.+
T Consensus 21 d~~~W~~RLKEEy~aLI~Y------v~~nK~~DndWF~lesn~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi 94 (161)
T PF08694_consen 21 DGDLWVQRLKEEYQALIKY------VENNKENDNDWFRLESNKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEI 94 (161)
T ss_dssp SCHHHHHHHHHHHHHHHHH------HHHHHHTT---EEEEE-TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----
T ss_pred CHHHHHHHHHHHHHHHHHH------HHhcccccCCeEEeccCCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcce
Confidence 3478999999999988531 1100011111211112244444433 23 445555699999999988
Q ss_pred EE
Q 020773 313 FI 314 (321)
Q Consensus 313 rF 314 (321)
..
T Consensus 95 ~l 96 (161)
T PF08694_consen 95 AL 96 (161)
T ss_dssp B-
T ss_pred ec
Confidence 54
No 28
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=80.79 E-value=5 Score=34.80 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=40.5
Q ss_pred ceEEEecCCCcceEEEEEeC--CCCCCCCCCEEEEEEECCCCCCCCCCeEEEEcCCCC
Q 020773 265 TIFVRVCEARMELLRAVMIG--PSGTPYHDGLFVFDCIFPPSYPNEPPVVFITIQGAS 320 (321)
Q Consensus 265 gI~V~p~EdnL~~WravI~G--PegTPYEGGlF~fdI~FP~dYP~sPPkVrFlT~glr 320 (321)
|+..+...+.-..|-+ |.| -+...|....=.+-|.+|..||..+|-+-|..+.|+
T Consensus 13 g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~ 69 (122)
T PF14462_consen 13 GLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLK 69 (122)
T ss_pred CceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceE
Confidence 5555544444444533 555 344569999999999999999999999989888875
No 29
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=77.29 E-value=2.7 Score=35.80 Aligned_cols=26 Identities=31% Similarity=0.705 Sum_probs=23.8
Q ss_pred CCCEEEEEEECCCCCCCCCCeEEEEc
Q 020773 291 HDGLFVFDCIFPPSYPNEPPVVFITI 316 (321)
Q Consensus 291 EGGlF~fdI~FP~dYP~sPPkVrFlT 316 (321)
.++.|.+.|.||+.||..||.|...-
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d 59 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLED 59 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecC
Confidence 68999999999999999999998764
No 30
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=71.96 E-value=11 Score=32.13 Aligned_cols=37 Identities=22% Similarity=0.540 Sum_probs=24.8
Q ss_pred cceEEEEEeCCCCCCCCCCEEE--EEEECCCCCCCCCCeEEEE
Q 020773 275 MELLRAVMIGPSGTPYHDGLFV--FDCIFPPSYPNEPPVVFIT 315 (321)
Q Consensus 275 L~~WravI~GPegTPYEGGlF~--fdI~FP~dYP~sPPkVrFl 315 (321)
|..+.++|. =.|.|..|. +.|.||.+||..||.|...
T Consensus 32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~ 70 (121)
T PF05743_consen 32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVR 70 (121)
T ss_dssp EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-
T ss_pred EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEe
Confidence 444444443 258888885 5566799999999999764
No 31
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.84 E-value=5.9 Score=35.34 Aligned_cols=67 Identities=19% Similarity=0.384 Sum_probs=41.9
Q ss_pred CCChHHHHHHHHHHHHHHhCCCCceEEEecCCCcceEEEEEeCCCCCCCCCCE--------EEEEEE--CCCCCCCCCCe
Q 020773 242 KPPKNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGL--------FVFDCI--FPPSYPNEPPV 311 (321)
Q Consensus 242 ~~ss~a~KRLqKElk~Lqkd~P~gI~V~p~EdnL~~WravI~GPegTPYEGGl--------F~fdI~--FP~dYP~sPPk 311 (321)
+-...|.+||..|++.|-.- |.-..++-..|.-+-.-++||-|-|-+ |.|+|. +|-.||...|.
T Consensus 23 rd~~~wvqrlkeey~sli~y------vqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tape 96 (167)
T KOG3357|consen 23 RDGDLWVQRLKEEYQSLIAY------VQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPE 96 (167)
T ss_pred ccchHHHHHHHHHHHHHHHH------HHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcc
Confidence 35568999999999988541 111112222343223457888776643 345555 59999999998
Q ss_pred EEE
Q 020773 312 VFI 314 (321)
Q Consensus 312 VrF 314 (321)
+..
T Consensus 97 ial 99 (167)
T KOG3357|consen 97 IAL 99 (167)
T ss_pred ccc
Confidence 753
No 32
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=52.89 E-value=51 Score=36.95 Aligned_cols=69 Identities=14% Similarity=0.257 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEecCCCcceEEEEEeCCCCCCCCC-CEEEEEEECCCCCCCC-CCeEEEEcC
Q 020773 247 WAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHD-GLFVFDCIFPPSYPNE-PPVVFITIQ 317 (321)
Q Consensus 247 a~KRLqKElk~Lqkd~P~gI~V~p~EdnL~~WravI~GPegTPYEG-GlF~fdI~FP~dYP~s-PPkVrFlT~ 317 (321)
--+-|.+|+..|...-+ .+.+.-..---....+.+.||-..- .| ...++.|.||.+||.. ||.++|..+
T Consensus 421 ~pQnLgeE~S~Ig~k~~-nV~fEkidva~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~~ 491 (1081)
T KOG0309|consen 421 LPQNLGEEFSLIGVKIR-NVNFEKIDVADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFENP 491 (1081)
T ss_pred hhhhHHhHHhHhhcccc-ccceEeeccccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEecC
Confidence 34567788877654322 3323211111123444556665433 22 3457889999999998 699998754
No 33
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. This family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases which are mononuclear non-heme iron enzymes that catalyze the oxygenation of catecholates to aliphatic acids via the cleavage of aromatic rings. The members are intradiol-cleaving enzymes which break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. Catechol 1,2-dioxygenases are mostly homodimers with one catalytic ferric ion per monomer. Protocatechuate 3,4-dioxygenases form more diverse oligomers.
Probab=52.85 E-value=19 Score=31.23 Aligned_cols=26 Identities=35% Similarity=0.786 Sum_probs=23.5
Q ss_pred CCCEEEEEEECCCCCC-CCCCeEEEEc
Q 020773 291 HDGLFVFDCIFPPSYP-NEPPVVFITI 316 (321)
Q Consensus 291 EGGlF~fdI~FP~dYP-~sPPkVrFlT 316 (321)
+.|.|.|.-.+|--|| ..||.|+|.-
T Consensus 64 ~~G~y~f~ti~Pg~Y~~~R~~HiH~~V 90 (146)
T cd00421 64 ADGRYRFRTIKPGPYPIGRPPHIHFKV 90 (146)
T ss_pred CCcCEEEEEEcCCCCCCCCCCEEEEEE
Confidence 3599999999999999 9999999974
No 34
>cd03457 intradiol_dioxygenase_like Intradiol dioxygenase supgroup. Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates. They break the catechol C1-C2 bond and utilize Fe3+, as opposed to the extradiol-cleaving enzymes which break the C2-C3 or C1-C6 bond and utilize Fe2+ and Mn+. The family contains catechol 1,2-dioxygenases and protocatechuate 3,4-dioxygenases. The specific function of this subgroup is unknown.
Probab=49.36 E-value=22 Score=32.56 Aligned_cols=26 Identities=31% Similarity=0.697 Sum_probs=23.8
Q ss_pred CCCEEEEEEECCCCCCCCCCeEEEEc
Q 020773 291 HDGLFVFDCIFPPSYPNEPPVVFITI 316 (321)
Q Consensus 291 EGGlF~fdI~FP~dYP~sPPkVrFlT 316 (321)
+.|.|.|.-.||--||..||.|+|.-
T Consensus 85 ~~G~~~F~TI~PG~Y~gR~~HIH~~V 110 (188)
T cd03457 85 ADGVVTFTTIFPGWYPGRATHIHFKV 110 (188)
T ss_pred CCccEEEEEECCCCCCCCCceEEEEE
Confidence 46999999999999999999999974
No 35
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=40.23 E-value=38 Score=30.15 Aligned_cols=25 Identities=32% Similarity=0.733 Sum_probs=22.9
Q ss_pred CCEEEEEEECCCCCC-----CCCCeEEEEc
Q 020773 292 DGLFVFDCIFPPSYP-----NEPPVVFITI 316 (321)
Q Consensus 292 GGlF~fdI~FP~dYP-----~sPPkVrFlT 316 (321)
.|.|.|.-.+|--|| ..||.|+|.-
T Consensus 72 ~G~~~f~Ti~Pg~Y~~p~~~~R~~HIH~~V 101 (158)
T cd03459 72 DGRYRFRTIKPGAYPWRNGAWRAPHIHVSV 101 (158)
T ss_pred CCcEEEEEECCCCcCCCCCCCcCCEEEEEE
Confidence 589999999999999 8999999974
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=34.87 E-value=84 Score=29.97 Aligned_cols=62 Identities=21% Similarity=0.380 Sum_probs=34.9
Q ss_pred HHHHHHHHHhCCCCce-EEEecCCCcceEEEEEeCCCCCC--CCCCEEEEEEECCCCCCCCCCeEEEE
Q 020773 251 IQEEWKILEKNLPDTI-FVRVCEARMELLRAVMIGPSGTP--YHDGLFVFDCIFPPSYPNEPPVVFIT 315 (321)
Q Consensus 251 LqKElk~Lqkd~P~gI-~V~p~EdnL~~WravI~GPegTP--YEGGlF~fdI~FP~dYP~sPPkVrFl 315 (321)
..+|+..|+.--|.-+ .|. ..+...+.+.|.--.+.- |. |.|.+.+.++.+||-.||.+.+.
T Consensus 7 Qe~E~EaLeSIY~de~~~i~--~~~~~~f~v~iq~e~~e~d~~~-~~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 7 QEEELEALESIYPDEFKHIN--SEDPPIFEVTIQYEEGENDEPK-GSFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred HHHHHHHHHHhccchhhhhh--ccCCccceeeeecccccCCCcc-ccEEEEEEccCCCCCCCcceecc
Confidence 3456666665444333 221 222222445554222211 12 28999999999999999998543
No 37
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=33.11 E-value=87 Score=30.65 Aligned_cols=60 Identities=12% Similarity=0.304 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHhCCCCceEEEecCCCcceEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCeEE
Q 020773 245 KNWAKKIQEEWKILEKNLPDTIFVRVCEARMELLRAVMIGPSGTPYHDGLFVFDCIFPPSYPNEPPVVF 313 (321)
Q Consensus 245 s~a~KRLqKElk~Lqkd~P~gI~V~p~EdnL~~WravI~GPegTPYEGGlF~fdI~FP~dYP~sPPkVr 313 (321)
....++|.+|+..|..+.. +.+. .+.++...+..+..- .....+.|.+|.+||.+||.+.
T Consensus 98 ~~~ys~ll~EIe~IGW~kl--~~i~-~d~~ls~i~l~~~D~------~R~H~l~l~l~~~yp~~~p~~~ 157 (291)
T PF09765_consen 98 PQYYSNLLKEIEAIGWDKL--VQIQ-FDDDLSTIKLKIFDS------SRQHYLELKLPSNYPFEPPSCS 157 (291)
T ss_dssp -GGC-CHHHHHHHHHCGCC--EEEE-E-CCCSEEEEEEETT------CEEEEEEEETTTTTTTSEEEEC
T ss_pred cHHHHHHHHHHHHhccccc--eEEe-cCCCccEEEEEEEcC------CceEEEEEEECCCCCCCCceee
Confidence 5567899999999987643 2222 356788888888731 2568899999999999999753
No 38
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit. This model represents the alpha chain of protocatechuate 3,4-dioxygenase. The most closely related family outside this family is that of the beta chain (TIGR02422), typically encoded in an adjacent locus. This enzyme acts in the degradation of aromatic compounds by way of p-hydroxybenzoate to succinate and acetyl-CoA.
Probab=30.01 E-value=65 Score=29.74 Aligned_cols=26 Identities=23% Similarity=0.664 Sum_probs=22.9
Q ss_pred CCCEEEEEEECCCCCCC-----CCCeEEEEc
Q 020773 291 HDGLFVFDCIFPPSYPN-----EPPVVFITI 316 (321)
Q Consensus 291 EGGlF~fdI~FP~dYP~-----sPPkVrFlT 316 (321)
+.|.|.|.-.+|--||. .||.|+|.-
T Consensus 95 ~~G~y~f~TI~Pg~Yp~~~g~~R~~HiH~~V 125 (193)
T TIGR02423 95 ESGEFTFETVKPGAVPDRDGVLQAPHINVSV 125 (193)
T ss_pred CCCCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 45889999999999998 999999963
No 39
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit. 3,4-PCD catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate. 3,4-PCDs are large aggregates of 12 protomers, each composed of an alpha- and beta-subunit and an Fe3+ ion bound in the beta-subunit at the alpha-subunit-beta-subunit interface. 3,4-PCD is a member of the aromatic dioxygenases which are non-heme iron intradiol-cleaving enzymes that break the C1-C2 bond and utilize Fe3+.
Probab=28.74 E-value=72 Score=29.27 Aligned_cols=25 Identities=28% Similarity=0.610 Sum_probs=22.1
Q ss_pred CCEEEEEEECCCCCCC-----CCCeEEEEc
Q 020773 292 DGLFVFDCIFPPSYPN-----EPPVVFITI 316 (321)
Q Consensus 292 GGlF~fdI~FP~dYP~-----sPPkVrFlT 316 (321)
.|.|.|.-.+|--||. .||.|+|.-
T Consensus 92 ~G~y~F~Ti~Pg~Y~~~~g~~R~~HIH~~V 121 (185)
T cd03463 92 DGRFSFTTVKPGAVPGRDGAGQAPHINVWV 121 (185)
T ss_pred CCCEEEEEEcCCCcCCCCCCCcCCeEEEEE
Confidence 4889999999999995 999999963
No 40
>PF11519 DUF3222: Protein of unknown function (DUF3222); InterPro: IPR021599 This family of proteins with unknown function appears to be restricted to Rhodopseudomonas. ; PDB: 2JS3_B.
Probab=26.23 E-value=21 Score=28.41 Aligned_cols=10 Identities=50% Similarity=1.002 Sum_probs=6.3
Q ss_pred ccccCccccc
Q 020773 140 EASLPWLKDI 149 (321)
Q Consensus 140 ea~~pwl~~~ 149 (321)
.|+|||||.-
T Consensus 39 ~asvpwl~tg 48 (74)
T PF11519_consen 39 NASVPWLQTG 48 (74)
T ss_dssp S-EEETTS--
T ss_pred CCcChhhhcC
Confidence 5899999965
No 41
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=23.63 E-value=98 Score=31.25 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=22.0
Q ss_pred CCEEEEEEECCCCCCCCCCeEEEEc
Q 020773 292 DGLFVFDCIFPPSYPNEPPVVFITI 316 (321)
Q Consensus 292 GGlF~fdI~FP~dYP~sPPkVrFlT 316 (321)
+-.|.+.|.+|..||...|.++|.+
T Consensus 305 ~F~flvHi~Lp~~FP~~qP~ltlqS 329 (333)
T PF06113_consen 305 DFTFLVHISLPIQFPKDQPSLTLQS 329 (333)
T ss_pred CeEEEEEEeccCCCCCcCCeEEEEe
Confidence 4558889999999999999999986
No 42
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial. Members of this family known so far are catechol 1,2-dioxygenases of the Proteobacteria. They are distinct from catechol 1,2-dioxygenases and chlorocatechol 1,2-dioxygenases of the Actinobacteria, which are quite similar to each other and resolved by separate models. This enzyme catalyzes intradiol cleavage in which catechol + O2 becomes cis,cis-muconate. Catechol is an intermediate in the catabolism of many different aromatic compounds, as is the alternative intermediate protocatechuate. In Acinetobacter lwoffii, two isozymes are present with abilities, differing somewhat, to act on catechol analogs 3-methylcatechol, 4-methylcatechol, 4-methoxycatechol, and 4-chlorocatechol.
Probab=23.09 E-value=99 Score=30.42 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=22.3
Q ss_pred CCCEEEEEEECCCCCC------------------CCCCeEEEE
Q 020773 291 HDGLFVFDCIFPPSYP------------------NEPPVVFIT 315 (321)
Q Consensus 291 EGGlF~fdI~FP~dYP------------------~sPPkVrFl 315 (321)
+.|.|.|.-.+|.-|| ..||.|+|.
T Consensus 179 ~~G~y~F~TI~P~~YpiP~dGp~g~lL~~~grh~~RpaHIHf~ 221 (285)
T TIGR02439 179 AEGRYRARSIVPSGYGCPPQGPTQQLLNLLGRHGNRPAHVHFF 221 (285)
T ss_pred CCCCEEEEEECCCCCcCCCCCcHHHHHHhccCCCCCCCeEEEE
Confidence 4699999999999997 789999996
No 43
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates. 1,2-HQD blongs to the aromatic dioxygenase family, a family of mononuclear non-heme intradiol-cleaving enzymes.
Probab=20.90 E-value=1.2e+02 Score=29.76 Aligned_cols=25 Identities=28% Similarity=0.687 Sum_probs=22.3
Q ss_pred CCCEEEEEEECCCCCC------------------CCCCeEEEE
Q 020773 291 HDGLFVFDCIFPPSYP------------------NEPPVVFIT 315 (321)
Q Consensus 291 EGGlF~fdI~FP~dYP------------------~sPPkVrFl 315 (321)
+.|.|.|.-.+|.-|| ..||.|+|.
T Consensus 171 ~~G~y~F~Ti~Pg~Ypip~dGp~g~lL~~~grh~~RpaHIHf~ 213 (277)
T cd03461 171 EDGRYAFRTLRPTPYPIPTDGPVGKLLKAMGRHPMRPAHIHFM 213 (277)
T ss_pred CCCCEEEEEECCCCcCCCCCCcHHHHHHhhhccCCCCCeEEEE
Confidence 4699999999999998 589999996
Done!