BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020775
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A8T|A Chain A, Plant Adenylate Isopentenyltransferase In Complex With Atp
Length = 339
Score = 244 bits (622), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 189/303 (62%), Gaps = 35/303 (11%)
Query: 28 RRQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGI 87
R +KEK+L+LMGATGTGKSRLSID+A FP E+INSDK+QVY+GLDI TNKI+ ++ G+
Sbjct: 36 RHRKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGV 95
Query: 88 PHHLLGIQHP-NADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALV----DDED 142
PHHLLG P + T +F +A ++ + K+P++VGGSNS+I AL+ D
Sbjct: 96 PHHLLGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSG 155
Query: 143 YGF-----------RWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDP-N 190
G +YDCCFLWVDVS+ VL ++++RVD M++ GM DE+ +F+ P +
Sbjct: 156 PGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKRVDDMLELGMFDELAEFYSPED 215
Query: 191 ADYSK------GVRKAIGVPEFDLYF-KMEPF-LDEENQAK------LLQQAIQAVKYNT 236
D+ + G+RKAIGVPEFD YF K P ++ E+ + ++A++A+K NT
Sbjct: 216 EDHDEDSATRTGLRKAIGVPEFDRYFEKFRPGDVEGEDPGRDRVRRGAFEEAVRAIKENT 275
Query: 237 CKLAFRQLEKIRRLMNVKRWNIHRFDATQVFR---IRQHGKAADEAWEKFVAGPSTRLVE 293
C LA RQ+ KI RL W++ R DAT+ FR G+ E WEK V PS ++V
Sbjct: 276 CHLAKRQIGKILRLKGAG-WDLRRLDATESFRAAMTSDSGEKCTEIWEKQVLEPSVKIVS 334
Query: 294 EFL 296
FL
Sbjct: 335 RFL 337
>pdb|2QGN|A Chain A, Crystal Structure Of Trna Isopentenylpyrophosphate
Transferase (Bh2366) From Bacillus Halodurans, Northeast
Structural Genomics Consortium Target Bhr41.
pdb|3EXA|A Chain A, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|B Chain B, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|C Chain C, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|D Chain D, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41
Length = 322
Score = 101 bits (252), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 74/122 (60%), Gaps = 9/122 (7%)
Query: 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHH 90
KEK++ ++G T GK++ S+ +A R E+I+ D QVY G DI T KIT EE G+PHH
Sbjct: 2 KEKLVAIVGPTAVGKTKTSVXLAKRLNGEVISGDSXQVYRGXDIGTAKITAEEXDGVPHH 61
Query: 91 LLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVD---------DE 141
L+ I+ P+ F+ +F D+A+ I +G++P +VGG+ Y+ A++ DE
Sbjct: 62 LIDIKDPSESFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADE 121
Query: 142 DY 143
DY
Sbjct: 122 DY 123
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 25/123 (20%)
Query: 149 YDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVR-----KAIGV 203
Y+ + + VL ++ RVD+ V+ G+IDE +K +D +G+R +AIG
Sbjct: 190 YNLVXIGLTXERDVLYDRINRRVDQXVEEGLIDEAKKLYD------RGIRDCQSVQAIG- 242
Query: 204 PEFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNIHRFDA 263
Y + +LD L++AI +K N+ + A RQL R NV W FD
Sbjct: 243 -----YKEXYDYLDGN---VTLEEAIDTLKRNSRRYAKRQLTWFRNKANVT-W----FDX 289
Query: 264 TQV 266
T V
Sbjct: 290 TDV 292
>pdb|3D3Q|A Chain A, Crystal Structure Of Trna
Delta(2)-Isopentenylpyrophosphate Transferase (Se0981)
From Staphylococcus Epidermidis. Northeast Structural
Genomics Consortium Target Ser100
pdb|3D3Q|B Chain B, Crystal Structure Of Trna
Delta(2)-Isopentenylpyrophosphate Transferase (Se0981)
From Staphylococcus Epidermidis. Northeast Structural
Genomics Consortium Target Ser100
Length = 340
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 70/105 (66%)
Query: 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLG 93
+++++G T +GK+ LSI++A +F EII+ D QVY+G DI T K+T EE GIPH+ +
Sbjct: 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGDSXQVYQGXDIGTAKVTTEEXEGIPHYXID 68
Query: 94 IQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALV 138
I P+A F+A F A I+ +GKVPII GG+ YI++L+
Sbjct: 69 ILPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLL 113
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 10/116 (8%)
Query: 145 FRWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVP 204
F YD + ++ S L +++RVD + +G+ +EV+ + + S+ +AIG
Sbjct: 192 FTENYDTLLIGIEXSRETLYLRINKRVDIXLGHGLFNEVQHLVEQGFEASQSX-QAIGYK 250
Query: 205 EFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNIHR 260
E K + EN A++ +K ++ + A RQL + NV N R
Sbjct: 251 ELVPVIKGN--ISXEN-------AVEKLKQHSRQYAKRQLTWFKNKXNVHWLNKER 297
>pdb|3EPH|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPH|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
Length = 409
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 72/108 (66%)
Query: 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHL 91
+KV+++ G TG GKS+LSI +A +F E+INSD +QVY+ + I+TNK +E+ GIPHH+
Sbjct: 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHV 61
Query: 92 LGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVD 139
+ + ++ + F +IE +GK+PI+VGG++ Y++ L +
Sbjct: 62 MNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTLFN 109
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 66/128 (51%), Gaps = 14/128 (10%)
Query: 148 KYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADY-------SKGVRKA 200
K+D FLW+ L + +RVD M++ G + E+++ ++ + GV +
Sbjct: 186 KFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCENGVWQV 245
Query: 201 IGVPEFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLM--NVKRWNI 258
IG EF + + ++N K L+ I+ +K T + A RQ++ I++++ ++K +I
Sbjct: 246 IGFKEFLPWLTGKT---DDNTVK-LEDCIERMKTRTRQYAKRQVKWIKKMLIPDIKG-DI 300
Query: 259 HRFDATQV 266
+ DAT +
Sbjct: 301 YLLDATDL 308
>pdb|3FOZ|A Chain A, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|3FOZ|B Chain B, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|2ZXU|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
pdb|2ZXU|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
Length = 316
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 66/114 (57%)
Query: 26 VSRRQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQC 85
+S+ K + LMG T +GK+ L+I++ P E+I+ D +Y+G+DI T K EE
Sbjct: 4 ISKASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELL 63
Query: 86 GIPHHLLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVD 139
PH LL I+ P+ ++A +F A + G++P++VGG+ Y +AL++
Sbjct: 64 AAPHRLLDIRDPSQAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKALLE 117
>pdb|2ZM5|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
pdb|2ZM5|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
Length = 316
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/114 (33%), Positives = 63/114 (55%)
Query: 26 VSRRQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQC 85
+S+ K + L G T +GK+ L+I++ P E+I+ D +Y+G DI T K EE
Sbjct: 4 ISKASLPKAIFLXGPTASGKTALAIELRKILPVELISVDSALIYKGXDIGTAKPNAEELL 63
Query: 86 GIPHHLLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVD 139
PH LL I+ P+ ++A +F A G++P++VGG+ Y +AL++
Sbjct: 64 AAPHRLLDIRDPSQAYSAADFRRDALAEXADITAAGRIPLLVGGTXLYFKALLE 117
>pdb|3CRM|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRQ|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRR|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
Length = 323
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 60/106 (56%)
Query: 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLG 93
+ LMG T GK+ L++ +A P E+I+ D +Y G+DI T K + E PH L+
Sbjct: 7 AIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLID 66
Query: 94 IQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVD 139
I+ P ++A F A ++ +G++P++VGG+ Y +AL++
Sbjct: 67 IRDPAESYSAAEFRADALAAMAKATARGRIPLLVGGTMLYYKALLE 112
>pdb|2WGY|A Chain A, Crystal Structure Of The G243a Mutant Of Cyp130 From M.
Tuberculosis
Length = 413
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 156 VDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVPEFD 207
V+ P +R FV ER++++ NG D V + F P S V +GVPE D
Sbjct: 119 VETVEPTVRKFVVERLEKLRANGGGDIVTELFKPLP--SMVVAHYLGVPEED 168
>pdb|2WH8|A Chain A, Interaction Of Mycobacterium Tuberculosis Cyp130 With
Heterocyclic Arylamines
pdb|2WH8|B Chain B, Interaction Of Mycobacterium Tuberculosis Cyp130 With
Heterocyclic Arylamines
pdb|2WH8|C Chain C, Interaction Of Mycobacterium Tuberculosis Cyp130 With
Heterocyclic Arylamines
pdb|2WH8|D Chain D, Interaction Of Mycobacterium Tuberculosis Cyp130 With
Heterocyclic Arylamines
pdb|2WHF|A Chain A, Interaction Of Mycobacterium Tuberculosis Cyp130 With
Heterocyclic Arylamines
Length = 413
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 156 VDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVPEFD 207
V+ P +R FV ER++++ NG D V + F P S V +GVPE D
Sbjct: 119 VETVEPTVRKFVVERLEKLRANGGGDIVTELFKPLP--SMVVAHYLGVPEED 168
>pdb|2UUQ|A Chain A, Crystal Structure Of Cyp130 From Mycobacterium
Tuberculosis In The Ligand-Free Form
pdb|2UVN|A Chain A, Crystal Structure Of Econazole-Bound Cyp130 From
Mycobacterium Tuberculosis
pdb|2UVN|B Chain B, Crystal Structure Of Econazole-Bound Cyp130 From
Mycobacterium Tuberculosis
Length = 414
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 156 VDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVPEFD 207
V+ P +R FV ER++++ NG D V + F P S V +GVPE D
Sbjct: 120 VETVEPTVRKFVVERLEKLRANGGGDIVTELFKPLP--SMVVAHYLGVPEED 169
>pdb|2HJ0|A Chain A, Crystal Structure Of The Putative Alfa Subunit Of Citrate
Lyase In Complex With Citrate From Streptococcus Mutans,
Northeast Structural Genomics Target Smr12 (Casp
Target).
pdb|2HJ0|B Chain B, Crystal Structure Of The Putative Alfa Subunit Of Citrate
Lyase In Complex With Citrate From Streptococcus Mutans,
Northeast Structural Genomics Target Smr12 (Casp Target)
Length = 519
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 9/89 (10%)
Query: 41 TGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQ---HP 97
TGTG + L++ TRF E D I+ L +TN E + G+ +L +Q HP
Sbjct: 278 TGTGGASLAV---TRFXREQXIKDDIKANFALGGITNAXVELLEEGLVDKILDVQDFDHP 334
Query: 98 NA---DFTAQNFCDMASFSIESTLNKGKV 123
+A D A+ ++ + S L+KG V
Sbjct: 335 SAVSLDRNAEKHYEIDANXYASPLSKGSV 363
>pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|B Chain B, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|C Chain C, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|D Chain D, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|F Chain F, Crystal Structure Of The Kinase Domain Of Mpp1P55
pdb|3NEY|E Chain E, Crystal Structure Of The Kinase Domain Of Mpp1P55
Length = 197
Score = 31.2 bits (69), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/83 (20%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPH 89
Q K L+L+GA+G G+S + + ++ P + + + T + E+ G +
Sbjct: 17 QGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYP--------VPYTTRPPRKSEEDGKEY 68
Query: 90 HLLGIQHPNADFTAQNFCDMASF 112
H + + + +A F + S+
Sbjct: 69 HFISTEEMTRNISANEFLEFGSY 91
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2
Bound To Amppnp
Length = 997
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 217 DEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLM 251
+ E Q K+LQ+ +Q ++Y +C++ +EK LM
Sbjct: 551 EHEKQIKVLQEELQTIEYKSCEICDNDIEKFLELM 585
>pdb|4A4K|A Chain A, Crystal Structure Of The S. Cerevisiae Ski2 Insertion
Domain
pdb|4A4K|C Chain C, Crystal Structure Of The S. Cerevisiae Ski2 Insertion
Domain
pdb|4A4K|E Chain E, Crystal Structure Of The S. Cerevisiae Ski2 Insertion
Domain
pdb|4A4K|G Chain G, Crystal Structure Of The S. Cerevisiae Ski2 Insertion
Domain
pdb|4A4K|I Chain I, Crystal Structure Of The S. Cerevisiae Ski2 Insertion
Domain
Length = 256
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 217 DEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLM 251
+ E Q K+LQ+ +Q ++Y +C++ +EK LM
Sbjct: 12 EHEKQIKVLQEELQTIEYKSCEICDNDIEKFLELM 46
>pdb|2HGZ|A Chain A, Crystal Structure Of A P-Benzoyl-L-Phenylalanyl-Trna
Synthetase
Length = 306
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 27/117 (23%)
Query: 134 IEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADY 193
I+ ++D ++ GF D L D L ++++ Q G +DE+RK DY
Sbjct: 48 IKKMIDLQNAGF----DIIILLAD-----LHAYLN-------QKGELDEIRKI----GDY 87
Query: 194 SKGVRKAIGVPEFDLYFKMEPF-LDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRR 249
+K V +A+G+ +Y PF LD++ + + A++ T K A R +E I R
Sbjct: 88 NKKVFEAMGLKAKYVYGS--PFQLDKDYTLNVYRLALKT----TLKRARRSMELIAR 138
>pdb|3N2E|A Chain A, Crystal Structure Of Helicobactor Pylori Shikimate
Kinase In Complex With Nsc162535
pdb|3N2E|B Chain B, Crystal Structure Of Helicobactor Pylori Shikimate
Kinase In Complex With Nsc162535
pdb|3N2E|C Chain C, Crystal Structure Of Helicobactor Pylori Shikimate
Kinase In Complex With Nsc162535
Length = 168
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 35 LILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEE 82
L+L+G G+GKS L+ ++ E++++D I + E + + +I EE
Sbjct: 4 LVLIGFMGSGKSSLAQELGLALKLEVLDTDMI-ISERVGLSVREIFEE 50
>pdb|1ZUH|A Chain A, Structural Basis For Shikimate-Binding Specificity Of
Helicobacter Pylori Shikimate Kinase
pdb|1ZUI|A Chain A, Structural Basis For Shikimate-binding Specificity Of
Helicobacter Pylori Shikimate Kinase
pdb|3HR7|A Chain A, Crystal Structure Of The Shikimate Kinase-Sulfate
Complex From Helicobacter Pylori
pdb|3HR7|B Chain B, Crystal Structure Of The Shikimate Kinase-Sulfate
Complex From Helicobacter Pylori
pdb|3MUF|A Chain A, Shikimate Kinase From Helicobacter Pylori In Complex
With Shikimate-3- Phosphate And Adp
Length = 168
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 35 LILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEE 82
L+L+G G+GKS L+ ++ E++++D I + E + + +I EE
Sbjct: 10 LVLIGFMGSGKSSLAQELGLALKLEVLDTDMI-ISERVGLSVREIFEE 56
>pdb|3MRS|A Chain A, Crystal Structure Of Shikimate Kinase Mutant (R57a) From
Helicobacter Pylori
Length = 168
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Query: 35 LILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEE 82
L+L+G G+GKS L+ ++ E++++D I + E + + +I EE
Sbjct: 10 LVLIGFMGSGKSSLAQELGLALKLEVLDTDMI-ISERVGLSVREIFEE 56
>pdb|2GRJ|A Chain A, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|B Chain B, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|C Chain C, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|D Chain D, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|E Chain E, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|F Chain F, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|G Chain G, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|H Chain H, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
Length = 192
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITE 81
V+ + G GTGKS + + ++ A ++N D+I +E L+ V K+ E
Sbjct: 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIG-HEVLEEVKEKLVE 60
>pdb|4E04|A Chain A, Rpbphp2 Chromophore-binding Domain Crystallized By
Homologue-directed Mutagenesis.
pdb|4E04|B Chain B, Rpbphp2 Chromophore-binding Domain Crystallized By
Homologue-directed Mutagenesis
Length = 327
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 59 EIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQ 104
EI D++ +Y + ++ E++C LG+ P +D AQ
Sbjct: 162 EITGFDRVMIYRFASDFSGEVIAEDRCAEVESYLGLHFPASDIPAQ 207
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,169,813
Number of Sequences: 62578
Number of extensions: 368420
Number of successful extensions: 965
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 943
Number of HSP's gapped (non-prelim): 33
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)