BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020775
(321 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q93WC9|IPT3_ARATH Adenylate isopentenyltransferase 3, chloroplastic OS=Arabidopsis
thaliana GN=IPT3 PE=1 SV=1
Length = 336
Score = 383 bits (983), Expect = e-105, Method: Compositional matrix adjust.
Identities = 186/322 (57%), Positives = 241/322 (74%), Gaps = 8/322 (2%)
Query: 7 ITPTPAMDLSSCR--PRMDLLVSRRQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSD 64
+ P+P +D R P M L K+KV+++MGATGTGKSRLS+D+ATRF AEIINSD
Sbjct: 14 LPPSPTLDFPPARFGPNMLTLNPYGPKDKVVVIMGATGTGKSRLSVDIATRFRAEIINSD 73
Query: 65 KIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMASFSIESTLNKGKVP 124
KIQV++GLDIVTNKIT EE CG+PHHLLG+ P AD TA N+C MA+ SIES LN+GK+P
Sbjct: 74 KIQVHQGLDIVTNKITSEESCGVPHHLLGVLPPEADLTAANYCHMANLSIESVLNRGKLP 133
Query: 125 IIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVR 184
IIVGGSNSY+EALVDD++ FR +YDCCFLWVDV++PVL FVSERVD+MV++GM++EVR
Sbjct: 134 IIVGGSNSYVEALVDDKENKFRSRYDCCFLWVDVALPVLHGFVSERVDKMVESGMVEEVR 193
Query: 185 KFFD-PNADYSKGVRKAIGVPEFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQ 243
+FFD N+DYS+G++KAIG PEFD +F+ E FL+ E++ +LL + ++ +K NT +LA RQ
Sbjct: 194 EFFDFSNSDYSRGIKKAIGFPEFDRFFRNEQFLNVEDREELLSKVLEEIKRNTFELACRQ 253
Query: 244 LEKIRRLMNVKRWNIHRFDATQVFRIRQHGKAADEAWEKFVAGPSTRLVEEFLYNVP--- 300
EKI RL VK+W+I R DAT VF R+ A+ AWE+ VAGPST V FL ++
Sbjct: 254 REKIERLRKVKKWSIQRVDATPVFTKRRSKMDANVAWERLVAGPSTDTVSRFLLDIASRR 313
Query: 301 --VEVPPASVASRDHNIKQCLV 320
VE A A+ + + +CLV
Sbjct: 314 PLVEASTAVAAAMERELSRCLV 335
>sp|Q94ID2|IPT5_ARATH Adenylate isopentenyltransferase 5, chloroplastic OS=Arabidopsis
thaliana GN=IPT5 PE=1 SV=2
Length = 330
Score = 322 bits (826), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 164/271 (60%), Positives = 206/271 (76%), Gaps = 6/271 (2%)
Query: 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIP 88
R+K+KV+ +MGATGTGKSRL+ID+ATRFPAEI+NSDKIQVY+GLDIVTNK+T EE G+P
Sbjct: 30 RRKDKVVFVMGATGTGKSRLAIDLATRFPAEIVNSDKIQVYKGLDIVTNKVTPEESLGVP 89
Query: 89 HHLLGIQHPN-ADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRW 147
HHLLG H DFTA++F A ++ES + + +VPII GGSNSYIEALV+D FR
Sbjct: 90 HHLLGTVHDTYEDFTAEDFQREAIRAVESIVQRDRVPIIAGGSNSYIEALVND-CVDFRL 148
Query: 148 KYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDP-NADYSKGVRKAIGVPEF 206
+Y+CCFLWVDVS PVL SFVSERVD+MV G++DEVR+ FDP ++DYS G+R+AIGVPE
Sbjct: 149 RYNCCFLWVDVSRPVLHSFVSERVDKMVDMGLVDEVRRIFDPSSSDYSAGIRRAIGVPEL 208
Query: 207 DLYFKME-PFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNIHRFDATQ 265
D + + E E +LL+ AI+ +K NTC LA RQL+KI+RL +WN+HR DAT+
Sbjct: 209 DEFLRSEMRNYPAETTERLLETAIEKIKENTCLLACRQLQKIQRLYKQWKWNMHRVDATE 268
Query: 266 VFRIRQHGKAADEAWEKFVAGPSTRLVEEFL 296
VF R G+ ADEAW+ VA PS VE+FL
Sbjct: 269 VFLRR--GEEADEAWDNSVAHPSALAVEKFL 297
>sp|Q94ID1|IPT7_ARATH Adenylate isopentenyltransferase 7, mitochondrial OS=Arabidopsis
thaliana GN=IPT7 PE=2 SV=2
Length = 329
Score = 293 bits (749), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 142/269 (52%), Positives = 197/269 (73%), Gaps = 2/269 (0%)
Query: 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHH 90
KEKV+ +MGATG+GKSRL+ID+ATRF EIINSDKIQ+Y+GLD++TNK+T +E G+PHH
Sbjct: 33 KEKVIFVMGATGSGKSRLAIDLATRFQGEIINSDKIQLYKGLDVLTNKVTPKECRGVPHH 92
Query: 91 LLGIQHPNA-DFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKY 149
LLG+ A + TA + +AS +I K+PI+ GGSNSYIEALV+ Y
Sbjct: 93 LLGVFDSEAGNLTATQYSRLASQAISKLSANNKLPIVAGGSNSYIEALVNHSSGFLLNNY 152
Query: 150 DCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVPEFDLY 209
DCCF+WVDVS+PVL SFVS+RVDRM++ G+++EVR+ F+P A+YS G+R+AIGVPE Y
Sbjct: 153 DCCFIWVDVSLPVLNSFVSKRVDRMMEAGLLEEVREVFNPKANYSVGIRRAIGVPELHEY 212
Query: 210 FKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNIHRFDATQVFRI 269
+ E +D ++K+L A++ +K NT LA RQL+KI+RL + ++HR DAT+VF +
Sbjct: 213 LRNESLVDRATKSKMLDVAVKNIKKNTEILACRQLKKIQRLHKKWKMSMHRVDATEVF-L 271
Query: 270 RQHGKAADEAWEKFVAGPSTRLVEEFLYN 298
+++ + DEAWE VA PS R+V++F N
Sbjct: 272 KRNVEEQDEAWENLVARPSERIVDKFYNN 300
>sp|Q5GHF7|IPT_HUMLU Adenylate isopentenyltransferase OS=Humulus lupulus PE=1 SV=1
Length = 329
Score = 243 bits (621), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 189/303 (62%), Gaps = 35/303 (11%)
Query: 28 RRQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGI 87
R +KEK+L+LMGATGTGKSRLSID+A FP E+INSDK+QVY+GLDI TNKI+ ++ G+
Sbjct: 26 RHRKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGV 85
Query: 88 PHHLLGIQHP-NADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALV----DDED 142
PHHLLG P + T +F +A ++ + K+P++VGGSNS+I AL+ D
Sbjct: 86 PHHLLGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSG 145
Query: 143 YGF-----------RWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDP-N 190
G +YDCCFLWVDVS+ VL ++++RVD M++ GM DE+ +F+ P +
Sbjct: 146 PGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDYLAKRVDDMLELGMFDELAEFYSPED 205
Query: 191 ADYSK------GVRKAIGVPEFDLYF-KMEPF-LDEENQAK------LLQQAIQAVKYNT 236
D+ + G+RKAIGVPEFD YF K P ++ E+ + ++A++A+K NT
Sbjct: 206 EDHDEDSATRTGLRKAIGVPEFDRYFEKFRPGDVEGEDPGRDRVRRGAFEEAVRAIKENT 265
Query: 237 CKLAFRQLEKIRRLMNVKRWNIHRFDATQVFR---IRQHGKAADEAWEKFVAGPSTRLVE 293
C LA RQ+ KI RL W++ R DAT+ FR G+ E WEK V PS ++V
Sbjct: 266 CHLAKRQIGKILRLKGAG-WDLRRLDATESFRAAMTSDSGEKCTEIWEKQVLEPSVKIVS 324
Query: 294 EFL 296
FL
Sbjct: 325 RFL 327
>sp|Q9LJL4|IPT8_ARATH Adenylate isopentenyltransferase 8, chloroplastic OS=Arabidopsis
thaliana GN=IPT8 PE=2 SV=1
Length = 330
Score = 238 bits (606), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 129/304 (42%), Positives = 193/304 (63%), Gaps = 30/304 (9%)
Query: 17 SCRPRMDLLVSRRQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVT 76
S P + + + K+KV+++MGATG+GKS LSID+ATRF EI+NSDKIQ Y+GL + T
Sbjct: 28 SVVPMTTVCMEQSYKQKVVVIMGATGSGKSCLSIDLATRFSGEIVNSDKIQFYDGLKVTT 87
Query: 77 NKITEEEQCGIPHHLLGIQHP-NADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIE 135
N+++ E+CG+PHHLLG P +++ T F +AS SI +G +PII GGSNS+I
Sbjct: 88 NQMSILERCGVPHHLLGELPPDDSELTTSEFRSLASRSISEITARGNLPIIAGGSNSFIH 147
Query: 136 ALV----DDEDYGFR--------WKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEV 183
AL+ D + Y F +Y+CCFLWVDVS+ VL ++S+RVD+M+++GM +E+
Sbjct: 148 ALLVDRFDPKTYPFSSETSISSGLRYECCFLWVDVSVSVLFEYLSKRVDQMMESGMFEEL 207
Query: 184 RKFFDP----NADYSKGVRKAIGVPEFDLYFKMEP-----FLDEENQAK--LLQQAIQAV 232
F+DP +A + G+ K IG+PEFD YF + P + E +QA+ +A+Q +
Sbjct: 208 AGFYDPRYSGSAIRAHGIHKTIGIPEFDRYFSLYPPERKQKMSEWDQARKGAYDEAVQEI 267
Query: 233 KYNTCKLAFRQLEKIRRLMNVKRWNIHRFDATQVFRIRQHGKAADEAWEKFVAGPSTRLV 292
K NT +LA +Q+E+I +L + W+I R DAT F G+++ E W+ V S ++V
Sbjct: 268 KENTWRLAKKQIERIMKLKS-SGWDIQRLDATPSF-----GRSSREIWDNTVLDESIKVV 321
Query: 293 EEFL 296
+ FL
Sbjct: 322 KRFL 325
>sp|Q94ID3|IPT1_ARATH Adenylate isopentenyltransferase 1, chloroplastic OS=Arabidopsis
thaliana GN=IPT1 PE=1 SV=2
Length = 357
Score = 233 bits (593), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 132/302 (43%), Positives = 189/302 (62%), Gaps = 27/302 (8%)
Query: 21 RMDLLVSRRQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKIT 80
RM+ SR +K+KV++++GATG GKSRLS+D+ATRFP+EIINSDKIQVYEGL+I TN+IT
Sbjct: 54 RMEQSRSRNRKDKVVVILGATGAGKSRLSVDLATRFPSEIINSDKIQVYEGLEITTNQIT 113
Query: 81 EEEQCGIPHHLLGIQHP-NADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVD 139
+++ G+PHHLLG+ +P + + TA F AS ++ ++ KVPII GGSNS++ AL+
Sbjct: 114 LQDRRGVPHHLLGVINPEHGELTAGEFRSAASNVVKEITSRQKVPIIAGGSNSFVHALLA 173
Query: 140 DE-DYGF------------RWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKF 186
D F +Y+CCF+WVDVS VL ++ RVD M+ +GM +E+ +F
Sbjct: 174 QRFDPKFDPFSSGSCLISSDLRYECCFIWVDVSETVLYEYLLRRVDEMMDSGMFEELSRF 233
Query: 187 FDP---NADYSKGVRKAIGVPEFDLYFKMEPFLDEENQAKLLQ-----QAIQAVKYNTCK 238
+DP + G+RKAIGVPEFD YFK P + + L+ +A+ +K NT
Sbjct: 234 YDPVKSGLETRFGIRKAIGVPEFDGYFKEYPPEKKMIKWDALRKAAYDKAVDDIKRNTWT 293
Query: 239 LAFRQLEKIRRLMNVKRWNIHRFDATQVFRIRQHGKAAD----EAWEKFVAGPSTRLVEE 294
LA RQ++KI L + W I R DAT F+ +++ E WE+ V PS ++V+
Sbjct: 294 LAKRQVKKIEMLKDAG-WEIERVDATASFKAVMMKSSSEKKWRENWEEQVLEPSVKIVKR 352
Query: 295 FL 296
L
Sbjct: 353 HL 354
>sp|Q9C6L1|IPT6_ARATH Adenylate isopentenyltransferase 6, chloroplastic OS=Arabidopsis
thaliana GN=IPT6 PE=2 SV=1
Length = 342
Score = 218 bits (555), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 124/300 (41%), Positives = 177/300 (59%), Gaps = 32/300 (10%)
Query: 31 KEKVLILMGATGTGKSRLSIDMATRF-PAEIINSDKIQVYEGLDIVTNKITEEEQCGIPH 89
K+KV+++ G TGTGKSRLS+D+ATRF PAEIINSDK+Q+Y+G +IVTN I EQ G+PH
Sbjct: 44 KDKVVLITGTTGTGKSRLSVDLATRFFPAEIINSDKMQIYKGFEIVTNLIPLHEQGGVPH 103
Query: 90 HLLGIQHP-NADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEAL--------VDD 140
HLLG HP + + T F +A+ SI ++ K+PI+VGGSNS+ AL +D
Sbjct: 104 HLLGQFHPQDGELTPAEFRSLATLSISKLISSKKLPIVVGGSNSFNHALLAERFDPDIDP 163
Query: 141 EDYGFR-------WKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADY 193
G +Y CC LWVDV PVL + RVD+M+++G+++++ + +DP D
Sbjct: 164 FSPGSSLSTICSDLRYKCCILWVDVLEPVLFQHLCNRVDQMIESGLVEQLAELYDPVVDS 223
Query: 194 SK--GVRKAIGVPEFDLYFKMEPFLDEENQAKLLQQA-----IQAVKYNTCKLAFRQLEK 246
+ GVRK IGV EFD YF++ P ++ L ++A ++ +K TC+L +Q EK
Sbjct: 224 GRRLGVRKTIGVEEFDRYFRVYPKEMDKGIWDLARKAAYEETVKGMKERTCRLVKKQKEK 283
Query: 247 IRRLMNVKRWNIHRFDATQVF-------RIRQHGKAADEAWEKFVAGPSTRLVEEFLYNV 299
I +L+ W I R DAT + GK E WEK + S +V++FL V
Sbjct: 284 IMKLIR-GGWEIKRLDATAAIMAELNQSTAKGEGKNGREIWEKHIVDESVEIVKKFLLEV 342
>sp|Q9SB60|IPT4_ARATH Adenylate isopentenyltransferase 4 OS=Arabidopsis thaliana GN=IPT4
PE=1 SV=1
Length = 318
Score = 201 bits (512), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 121/294 (41%), Positives = 177/294 (60%), Gaps = 30/294 (10%)
Query: 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHL 91
+K++++MGATG+GKS LS+D+A F AEIINSDK+Q Y+GL I TN+ T E++ G+PHHL
Sbjct: 5 DKMVVIMGATGSGKSSLSVDLALHFKAEIINSDKMQFYDGLKITTNQSTIEDRRGVPHHL 64
Query: 92 LGIQHPNA-DFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALV----DDEDYGF- 145
LG +P A + TA F MA+ +I + K+PI+ GGSNSYI AL+ D E+Y F
Sbjct: 65 LGELNPEAGEVTAAEFRVMAAEAISEITQRKKLPILAGGSNSYIHALLAKSYDPENYPFS 124
Query: 146 --------RWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSK-- 195
KYDCCF+W+DV VL ++S R+D M+++GM +E+ +F +
Sbjct: 125 DHKGSICSELKYDCCFIWIDVDQSVLFEYLSLRLDLMMKSGMFEEIAEFHRSKKAPKEPL 184
Query: 196 GVRKAIGVPEFDLYFKMEPFLDEENQ-----AKLLQQAIQAVKYNTCKLAFRQLEKIRRL 250
G+ KAIGV EFD Y KM + ++ ++ + ++A++A+K NT +L Q+ KI +L
Sbjct: 185 GIWKAIGVQEFDDYLKMYKWDNDMDKWDPMRKEAYEKAVRAIKENTFQLTKDQITKINKL 244
Query: 251 MNVKRWNIHRFDATQVFR--IR--QHGKAADEA----WEKFVAGPSTRLVEEFL 296
N W+I + DAT FR IR + G+ E W K V P ++V L
Sbjct: 245 RNAG-WDIKKVDATASFREAIRAAKEGEGVAEMQRKIWNKEVLEPCVKIVRSHL 297
>sp|Q9ZUX7|IPT2_ARATH tRNA dimethylallyltransferase 2 OS=Arabidopsis thaliana GN=IPT2
PE=1 SV=2
Length = 466
Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 79/102 (77%)
Query: 37 LMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQH 96
+MG TG+GKS+L++D+A+ FP EIIN+D +Q+Y GLD++TNK+T +EQ G+PHHLLG
Sbjct: 25 IMGPTGSGKSKLAVDLASHFPVEIINADAMQIYSGLDVLTNKVTVDEQKGVPHHLLGTVS 84
Query: 97 PNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALV 138
+ +FTA++F D IE +++ +P++VGG++ YI+A+V
Sbjct: 85 SDMEFTARDFRDFTVPLIEEIVSRNHIPVLVGGTHYYIQAVV 126
Score = 88.2 bits (217), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 54/176 (30%), Positives = 88/176 (50%), Gaps = 32/176 (18%)
Query: 148 KYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVPEFD 207
++D C + +D VL +V +RVD MV G++DEV + P ADY++G+R++IGV EF+
Sbjct: 223 RFDYCLICMDAETAVLDRYVEQRVDAMVDAGLLDEVYDIYKPGADYTRGLRQSIGVREFE 282
Query: 208 LYFKME---------------------------PFLDEENQAKLLQQAIQAVKYNTCKLA 240
+ K+ F ++ +L++AI VK NT +L
Sbjct: 283 DFLKIHLSETCAGHLTSLSNDDKVMKENLRKILNFPKDDKLRIMLEEAIDRVKLNTRRLL 342
Query: 241 FRQLEKIRRLMNVKRWNIHRFDATQVFRIRQHGKAADEAWEKFVAGPSTRLVEEFL 296
RQ ++ RL V WNIH DAT+ + ++E+W V P++ ++ FL
Sbjct: 343 RRQKRRVSRLETVFGWNIHYIDATEYILSK-----SEESWNAQVVKPASEIIRCFL 393
>sp|Q9CHU2|MIAA_LACLA tRNA dimethylallyltransferase OS=Lactococcus lactis subsp. lactis
(strain IL1403) GN=miaA PE=3 SV=1
Length = 294
Score = 118 bits (296), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 86/281 (30%), Positives = 132/281 (46%), Gaps = 72/281 (25%)
Query: 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLL 92
KVL+++G T GK+ L ID+A +F EII+ D QVY+GLDI T K+T EQ +PHHL+
Sbjct: 5 KVLVVVGPTAVGKTALGIDLAIKFNGEIISGDSQQVYQGLDIGTAKVTMAEQAQVPHHLI 64
Query: 93 GIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSN----SYIE------------- 135
++ +F+ +F A+ I+ L++GKVPIIVGG+ S IE
Sbjct: 65 DVRKWTENFSVHDFVIEANQLIKEILDQGKVPIIVGGTGLYIQSLIEGYHLGGQENHEEM 124
Query: 136 -------ALVDDE---------------------------------DYGFRWKYDCCFLW 155
+L+ DE D YD +
Sbjct: 125 MKLREELSLLSDEELFAKVIKINPDISELNRRRAIRFLELQTFGSQDENLGSDYDFLLIG 184
Query: 156 VDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFD--PNADYSKGVRKAIGVPEFDLYFKME 213
++ VL +++RVD+M++ G++DE R ++ P +KG IG EF YF +
Sbjct: 185 LNADRKVLYDRINQRVDQMMREGLLDEARTLYEQAPEVQAAKG----IGYKEFFPYFSGD 240
Query: 214 PFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVK 254
L+E A++ VK N+ + A RQL + M+V+
Sbjct: 241 ISLEE---------AVELVKRNSRRYAKRQLTWFKNRMSVE 272
>sp|A0AI95|MIAA_LISW6 tRNA dimethylallyltransferase OS=Listeria welshimeri serovar 6b
(strain ATCC 35897 / DSM 20650 / SLCC5334) GN=miaA PE=3
SV=1
Length = 305
Score = 118 bits (295), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 88/285 (30%), Positives = 126/285 (44%), Gaps = 75/285 (26%)
Query: 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLG 93
V++++G T GK+ LSI++A + EII+ D +QVY GLDI T KIT EE CGI HHL+
Sbjct: 6 VIVIVGPTAVGKTSLSIELAKKLDGEIISGDSMQVYRGLDIGTAKITSEEMCGIKHHLID 65
Query: 94 IQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYG-------FR 146
+ + FTA F IES ++GK+PIIVGG+ YI+++ D D+G FR
Sbjct: 66 VTDASVPFTAAKFQSETMALIESIHSRGKLPIIVGGTGLYIQSVFYDYDFGNSSEDKAFR 125
Query: 147 WKYDC---CFLWV---------------------------------------------DV 158
K D LW D+
Sbjct: 126 AKLDSLDKVTLWKMLEQQDPESAKLIHENNKRRVIRALEVIHLTGKPFSEYQVHHKLNDM 185
Query: 159 SMPVL------RSFVSER----VDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVPEFDL 208
P+ R+ + ER VD M + G++ E +K +D N +R IG E
Sbjct: 186 YKPLFLGLDLDRALLYERINQRVDIMFEQGLVSEAKKLYDENLADVPAIR-GIGYKELFT 244
Query: 209 YFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNV 253
YF E N L++A + ++ N+ A RQL R M +
Sbjct: 245 YF-------EGNST--LEEAKELIQKNSRHFAKRQLTWFRNRMEI 280
>sp|B7GIA2|MIAA_ANOFW tRNA dimethylallyltransferase OS=Anoxybacillus flavithermus (strain
DSM 21510 / WK1) GN=miaA PE=3 SV=1
Length = 311
Score = 114 bits (286), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 53/109 (48%), Positives = 75/109 (68%)
Query: 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHL 91
EKV++L+G T GK+++SI +A R EIIN D +QVY+GLDI T KI +EE GIPHHL
Sbjct: 3 EKVVVLIGPTAVGKTKMSIQLAKRLNGEIINGDSMQVYKGLDIGTAKIRQEETEGIPHHL 62
Query: 92 LGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDD 140
L I+ P+ F+ F +A I+ +GK+PIIVGG+ YI++++ D
Sbjct: 63 LDIKEPHESFSVAEFQTLARSLIKDITKRGKLPIIVGGTGLYIQSVIYD 111
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 58/116 (50%), Gaps = 15/116 (12%)
Query: 149 YDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVPEFDL 208
Y+ + + + L + +++RVD+M+ G+I+EV++ ++ + + +AIG E
Sbjct: 185 YNVALIGLTMEREKLYARINQRVDQMIDQGLIEEVKRLYEQGLRDCQAI-QAIGYKELYA 243
Query: 209 YFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNIHRFDAT 264
YF + L++AI+ +K N+ + A RQ R M V+ W FD T
Sbjct: 244 YF---------DGMLTLKEAIEQLKQNSRRYAKRQFTWFRNQMPVQ-W----FDMT 285
>sp|B8DG34|MIAA_LISMH tRNA dimethylallyltransferase OS=Listeria monocytogenes serotype 4a
(strain HCC23) GN=miaA PE=3 SV=1
Length = 305
Score = 108 bits (270), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 83/285 (29%), Positives = 125/285 (43%), Gaps = 75/285 (26%)
Query: 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLG 93
V++++G T GK+ LSI++A R EII+ D +QVY GLDI T KIT EE GI H+L+
Sbjct: 6 VIVIVGPTAVGKTSLSIELAKRLDGEIISGDSMQVYRGLDIGTAKITPEEMGGIKHYLID 65
Query: 94 IQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYG-------FR 146
+ P+ FTA F +IE+ GK+PIIVGG+ YI+++ D D+G +R
Sbjct: 66 VTDPSVPFTAAKFQSETRKAIETIHQAGKLPIIVGGTGLYIQSVFYDYDFGNASEDKAYR 125
Query: 147 WK---YDCCFLWV---------------------------------------------DV 158
K D LW D
Sbjct: 126 AKLEQLDKVILWQMLEQQDPESARQIHENNKRRVIRALEVMHLTGKPFSEYQVHNVLNDT 185
Query: 159 SMPVL------RSFVSERVDR----MVQNGMIDEVRKFFDPNADYSKGVRKAIGVPEFDL 208
P+ R + ER+++ M + G+I E +K ++ + VR IG E
Sbjct: 186 YKPLFLGLDLDRELLYERINQRVNLMFEQGLITEAKKLYEQHLVDVPAVR-GIGYKELFP 244
Query: 209 YFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNV 253
YF+ + L+E A + ++ N+ A RQL R M++
Sbjct: 245 YFERKSSLEE---------AKELIQKNSRHFAKRQLTWFRNRMDI 280
>sp|Q04FB0|MIAA_OENOB tRNA dimethylallyltransferase OS=Oenococcus oeni (strain ATCC
BAA-331 / PSU-1) GN=miaA PE=3 SV=1
Length = 257
Score = 108 bits (269), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 72/249 (28%), Positives = 121/249 (48%), Gaps = 28/249 (11%)
Query: 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHH 90
KEKV+++ G T +GKS L+I +A +EII+ D Q+Y GLDI T K ++++ + HH
Sbjct: 7 KEKVVVIAGPTASGKSDLAIKIAQMIDSEIISEDAFQIYRGLDIGTAKPSKDDLAKVKHH 66
Query: 91 LLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDD---------- 140
+ I+ + ++A F A I +K K+P+IVGGS +++ L+ D
Sbjct: 67 FIDIKEVDESYSAYEFARDARIVINQISSKKKIPLIVGGSGFFLQTLLGDRRISDKDNPI 126
Query: 141 --EDYGFRWK-YDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGV 197
+ G + Y+ + ++ L +++RV+RM + G++ E F ++
Sbjct: 127 VPKKAGIENRLYNALLIGLNTERSQLYDRINQRVERMFEKGIVKEAENLFRQQGNFQS-- 184
Query: 198 RKAIGVPEFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWN 257
+KAIG EF YF NQ L + +K ++ + A RQL + RW
Sbjct: 185 KKAIGYREFAGYF--------ANQYD-LSEVETLIKRDSRRYAKRQLTYFKNQFPDMRW- 234
Query: 258 IHRFDATQV 266
FD Q+
Sbjct: 235 ---FDTKQI 240
>sp|A7Z500|MIAA_BACA2 tRNA dimethylallyltransferase OS=Bacillus amyloliquefaciens (strain
FZB42) GN=miaA PE=3 SV=1
Length = 314
Score = 107 bits (268), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 79/118 (66%), Gaps = 2/118 (1%)
Query: 28 RRQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGI 87
+ +K+ V+IL+G T GK++LSI +A AEII+ D +QVY+G+DI T K+TEEE G+
Sbjct: 2 KNKKQPVVILVGPTAVGKTKLSIGLAKMLNAEIISGDSMQVYKGMDIGTAKVTEEETEGV 61
Query: 88 PHHLLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGF 145
PHHL+ I P+ F+ ++ M I ++GK+P+IVGG+ YI++++ DY F
Sbjct: 62 PHHLIDILEPSDTFSTADYQKMVRGKITEIADRGKLPMIVGGTGLYIQSVL--YDYTF 117
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 59/106 (55%), Gaps = 12/106 (11%)
Query: 149 YDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVPEFDL 208
Y+ + + + VL ++ERVD M++ G++DEV++ +D N S+ + +AIG
Sbjct: 192 YNAVLIGLTMDREVLYGRINERVDLMLETGLLDEVKRLYDMNIRDSQSI-QAIG------ 244
Query: 209 YFKMEPFLDEENQAKL-LQQAIQAVKYNTCKLAFRQLEKIRRLMNV 253
Y ++ +LD K+ L QA++ +K N+ + A RQL R M V
Sbjct: 245 YKELYEYLD----GKVPLPQAVEQLKQNSRRYAKRQLTWFRNKMPV 286
>sp|B1HRH3|MIAA_LYSSC tRNA dimethylallyltransferase OS=Lysinibacillus sphaericus (strain
C3-41) GN=miaA PE=3 SV=1
Length = 300
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/172 (35%), Positives = 94/172 (54%), Gaps = 24/172 (13%)
Query: 24 LLVSRRQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEE 83
++ ++ Q+ +V+ ++G T +GK+ LSI++A ++ EIIN D +QVY+GLDI T KITEEE
Sbjct: 1 MIENKLQQAEVVAIVGPTASGKTALSIELAKKYNGEIINGDSMQVYKGLDIGTAKITEEE 60
Query: 84 QCGIPHHLLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDY 143
G+PHHLL P A F+ ++ + I + K+PIIVGGS Y++A++ D
Sbjct: 61 MEGVPHHLLSFLEPTASFSVADYQKLVREKIADIQARHKLPIIVGGSGLYVQAVLFD--- 117
Query: 144 GFRWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSK 195
F+ F E+VD + DE+ K P A + K
Sbjct: 118 -FQ-------------------FTDEKVDEAARQAYYDELAK-LGPEAMHDK 148
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 57/102 (55%), Gaps = 14/102 (13%)
Query: 154 LWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVR--KAIGVPEFDLYFK 211
L ++S VL ++ RVD M++NG+++EV+ + N +GV+ +AIG Y +
Sbjct: 202 LGQNMSREVLYDRINRRVDLMMENGLLEEVQGLWQQNI---RGVQSIQAIG------YKE 252
Query: 212 MEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNV 253
+ +LD + L+ AI ++K N+ + A RQL R M+V
Sbjct: 253 LYDYLDGKCS---LEGAIDSLKQNSRRYAKRQLTYFRNKMDV 291
>sp|A3CNS2|MIAA_STRSV tRNA dimethylallyltransferase OS=Streptococcus sanguinis (strain
SK36) GN=miaA PE=3 SV=1
Length = 294
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 85/290 (29%), Positives = 132/290 (45%), Gaps = 78/290 (26%)
Query: 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHH 90
K K+++++G T GK+ LSI++A RF +II+ D QVY GLDI T KI EEQ GIPHH
Sbjct: 2 KTKIIVIVGPTAVGKTALSIEVAKRFNGQIISGDSQQVYRGLDIGTAKIRPEEQEGIPHH 61
Query: 91 LLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVD----------D 140
LL ++ ++A +F A+ +I + ++PII GG+ YI++L++ +
Sbjct: 62 LLDVREVGESYSAYDFVTEAAQAIREIAAQDQLPIICGGTGLYIQSLLEGYHLGGSVPHE 121
Query: 141 EDYGFRWKYDCCFLWVD-----------VSMPVL-------------------------- 163
E +R + D W D + +P L
Sbjct: 122 EILAYRAQLDS---WSDEDLFRKIAELGIEIPQLNRRRAMRALEIAHLGGSLENSQPDYE 178
Query: 164 ---------RSFVSER----VDRMVQNGMIDEVRKFFD--PNADYSKGVRKAIGVPEFDL 208
R + ER VD M++ G+++E R ++ P + SKG IG E
Sbjct: 179 ALLICLDDERERLYERINHRVDLMLEAGLLEEARWLYEQAPISQASKG----IGYKELFP 234
Query: 209 YFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNI 258
YF+ L+E A+ +K NT + A RQL R M+V + +
Sbjct: 235 YFEGRMSLEE---------AVDTLKQNTRRFAKRQLTWFRNRMSVTFYQV 275
>sp|Q8R5S5|MIAA_THETN tRNA dimethylallyltransferase OS=Thermoanaerobacter tengcongensis
(strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
GN=miaA PE=3 SV=1
Length = 315
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 75/106 (70%)
Query: 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLL 92
++++++G T TGKSRL++D+A RF E++++D +Q+Y+ +DI T KIT+EE GIPHH++
Sbjct: 4 QIVLIVGPTATGKSRLAVDVAKRFNGEVVSADSMQIYKYMDIGTAKITKEEMQGIPHHMI 63
Query: 93 GIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALV 138
I PN +F+ + A I+ +GK+PIIVGG+ YI ++V
Sbjct: 64 DIVEPNEEFSVAEYEKRAKAIIKDIHERGKLPIIVGGTGLYINSIV 109
>sp|A8FDI9|MIAA_BACP2 tRNA dimethylallyltransferase OS=Bacillus pumilus (strain SAFR-032)
GN=miaA PE=3 SV=2
Length = 318
Score = 106 bits (265), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 75/113 (66%)
Query: 28 RRQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGI 87
++ K+ V++L+G T GK++LSI +A + EII+ D +Q+Y+G+DI T KIT EE G+
Sbjct: 2 KKTKQPVIVLVGPTAVGKTKLSIHIAKAYNGEIISGDSMQIYKGMDIGTAKITSEEMDGV 61
Query: 88 PHHLLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDD 140
PHHL+ I+ P+ F+ F + I+ +GK P+IVGG+ YI++++ D
Sbjct: 62 PHHLIDIKEPDESFSTAEFQQLVRMKIKEIAARGKTPMIVGGTGLYIQSVLYD 114
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 15/116 (12%)
Query: 149 YDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVPEFDL 208
YD F+ + + +L + +R+D M+ G+I+EV + + V+ AIG E
Sbjct: 192 YDTAFIGLKMDRELLYERIHQRIDMMIDEGLIEEVSALYQSGLKDCQSVQ-AIGYKELYT 250
Query: 209 YFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNIHRFDAT 264
YF+ + LDE AIQ +K N+ + A RQ R M+V W FD T
Sbjct: 251 YFQGDCSLDE---------AIQQLKQNSRRYAKRQFTWFRNKMDVT-W----FDMT 292
>sp|Q03G75|MIAA_PEDPA tRNA dimethylallyltransferase OS=Pediococcus pentosaceus (strain
ATCC 25745 / 183-1w) GN=miaA PE=3 SV=1
Length = 310
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 75/113 (66%)
Query: 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHL 91
EKVL ++G T GK+ LSID+A +F EII+ D +QVY+ LDI T K+T EE GIPHHL
Sbjct: 2 EKVLAIVGPTAVGKTNLSIDIAKKFNGEIISGDSMQVYQKLDIGTAKVTIEEMQGIPHHL 61
Query: 92 LGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYG 144
+ + + F+A +F + A I +GK+PI+VGG+ Y++AL+ D + G
Sbjct: 62 IDTKTIHDRFSAADFKETAQKLISEISQRGKLPIVVGGTGFYLQALLRDLELG 114
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 19/114 (16%)
Query: 149 YDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFD----PNADYSKGVRKAIGVP 204
YD + ++ +L ++ RV+ M+ G+ +E R FD P A+ K IG
Sbjct: 186 YDDLLIGLNTERSILYQRINHRVNMMLDAGLENEARWLFDETKVPQAN------KGIGYR 239
Query: 205 EFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNI 258
E+ YFK E K L + I+ ++ ++ A RQL R M+V ++I
Sbjct: 240 EWQDYFKNE---------KTLSETIELIQKDSRHYAKRQLTWFRNKMDVNWYDI 284
>sp|Q6GHD2|MIAA_STAAR tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
MRSA252) GN=miaA PE=3 SV=1
Length = 311
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 75/110 (68%)
Query: 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIP 88
+ K +++++G T +GK+ LSI++A R EII+ D +QVY+ ++I T K+T EE GIP
Sbjct: 3 KNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDGIP 62
Query: 89 HHLLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALV 138
HHL+GI +P+ F+A F +A I N+GKVPII GG+ YI++L+
Sbjct: 63 HHLIGILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLI 112
Score = 36.2 bits (82), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 57/112 (50%), Gaps = 11/112 (9%)
Query: 145 FRWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVP 204
F YD + +++S L S +++RVD M+ +G+ EV++ + + + + +AIG
Sbjct: 191 FTENYDTLLIGIEMSRKTLYSRINKRVDIMLDHGLFREVQQLVEQGYESCQSM-QAIG-- 247
Query: 205 EFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRW 256
Y ++ P + N + + A+ +K ++ + A RQ+ + M+V W
Sbjct: 248 ----YKELIPVI---NGQMIYEDAVNDLKQHSRQYAKRQMTWFKNKMSV-HW 291
>sp|O31795|MIAA_BACSU tRNA dimethylallyltransferase OS=Bacillus subtilis (strain 168)
GN=miaA PE=3 SV=2
Length = 314
Score = 105 bits (262), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 75/115 (65%), Gaps = 2/115 (1%)
Query: 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHH 90
K+ V+IL+G T GK+ LSI +A AEII+ D +Q+Y+G+DI T KITE+E G+PHH
Sbjct: 5 KQPVVILVGPTAVGKTNLSIQLAKSLNAEIISGDSMQIYKGMDIGTAKITEQEMEGVPHH 64
Query: 91 LLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGF 145
L+ I P F+ ++ + I N+GK+P+IVGG+ YI++++ DY F
Sbjct: 65 LIDILDPQDSFSTADYQSLVRNKISEIANRGKLPMIVGGTGLYIQSVL--YDYTF 117
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 15/116 (12%)
Query: 149 YDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVPEFDL 208
Y+ + + + L +++RVD M+Q+G++ EV++ +D N + + +AIG E
Sbjct: 192 YNAVLIGLTMDRDTLYERINQRVDLMMQSGLLPEVKRLYDKNVRDCQSI-QAIGYKELYA 250
Query: 209 YFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNIHRFDAT 264
YF + F+ L A++ +K N+ + A RQL R M V W FD T
Sbjct: 251 YF--DGFVT-------LSDAVEQLKQNSRRYAKRQLTWFRNKMQVT-W----FDMT 292
>sp|A4VVZ3|MIAA_STRSY tRNA dimethylallyltransferase OS=Streptococcus suis (strain
05ZYH33) GN=miaA PE=3 SV=1
Length = 294
Score = 105 bits (261), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 127/287 (44%), Gaps = 72/287 (25%)
Query: 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHH 90
K KV++++G T GK+ L ID+A R+ EII+ D QVY LDI T K + EEQ HH
Sbjct: 2 KTKVIVVIGPTAVGKTALGIDLAQRYNGEIISGDSQQVYRKLDIGTAKASPEEQAAAVHH 61
Query: 91 LLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYG------ 144
L+ ++ ++A F A I ++GK+PIIVGG+ YI++L++ G
Sbjct: 62 LIDVRDVTEGYSAYEFVAEAKALIADIKSRGKLPIIVGGTGLYIQSLLEGYHLGGLVDQE 121
Query: 145 ----FRWKYDC-----------------------------------------------CF 153
+R + DC +
Sbjct: 122 QVLAYRAELDCLSDEDLETMAEQAGLMVEGNSRRRIIRGLELKKFGENLENTESGYEPLY 181
Query: 154 LWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFD--PNADYSKGVRKAIGVPEFDLYFK 211
+ + VL +++RVD+M+ G++DEV + P A + G IG EF F
Sbjct: 182 ICLTDDRQVLYDRINQRVDKMMAAGLLDEVSWLYQEHPEAQAAMG----IGYKEF---F- 233
Query: 212 MEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNI 258
P+L E Q L++AI VK N+ + A RQL R M V + +
Sbjct: 234 --PYL--EGQIS-LEEAIDNVKQNSRRFAKRQLTWFRNRMAVDFYQV 275
>sp|B5XL33|MIAA_STRPZ tRNA dimethylallyltransferase OS=Streptococcus pyogenes serotype
M49 (strain NZ131) GN=miaA PE=3 SV=1
Length = 299
Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 129/299 (43%), Gaps = 72/299 (24%)
Query: 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHH 90
K K+++++G T GK+ L I +A F EII+ D QVY LDI T K T+EEQ HH
Sbjct: 3 KIKIVVIVGPTAVGKTALGISLAKAFNGEIISGDSQQVYRQLDIGTAKATQEEQEAAVHH 62
Query: 91 LLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALV------------ 138
L+ I+ ++A +F A +I +++GK+PIIVGG+ Y+++L+
Sbjct: 63 LIDIREVTESYSAYDFVQDAQKAISDIVSRGKLPIIVGGTGLYLQSLLEGYHLGGQVNQE 122
Query: 139 ------------DDEDYGFRWK---------------------------------YDCCF 153
DD D R + Y+
Sbjct: 123 AVKAYRNELEQLDDHDLYERLQVNNITIEQVNRRRAIRALELAQFADELENAETAYEPLI 182
Query: 154 LWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFD--PNADYSKGVRKAIGVPEFDLYFK 211
+ ++ V+ +++RVDRM++NG+++E + ++ P S+G IG E YF
Sbjct: 183 IGLNDDRQVIYDRINQRVDRMLENGLLEEAKWLYEHYPTVQASRG----IGYKELFPYFV 238
Query: 212 MEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNIHRFDATQVFRIR 270
E L E A +K NT + A RQL R M V I D QV R
Sbjct: 239 GEMTLAE---------ASDQLKQNTRRFAKRQLTWFRNRMAVSFTAITAPDYPQVVHDR 288
>sp|A4W2A2|MIAA_STRS2 tRNA dimethylallyltransferase OS=Streptococcus suis (strain
98HAH33) GN=miaA PE=3 SV=1
Length = 294
Score = 104 bits (260), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 84/287 (29%), Positives = 127/287 (44%), Gaps = 72/287 (25%)
Query: 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHH 90
K KV++++G T GK+ L ID+A R+ EII+ D QVY LDI T K + EEQ HH
Sbjct: 2 KTKVIVVIGPTAVGKTALGIDLAQRYNGEIISGDSQQVYRKLDIGTAKASPEEQAAAVHH 61
Query: 91 LLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYG------ 144
L+ ++ ++A F A I ++GK+PIIVGG+ YI++L++ G
Sbjct: 62 LIDVRDVTEGYSAYEFVAEAKALIADIKSRGKLPIIVGGTGLYIQSLLEGYHLGGLVDQE 121
Query: 145 ----FRWKYDC-----------------------------------------------CF 153
+R + DC +
Sbjct: 122 QVLAYRAELDCLSDEDLETMAEQAGLMVEGNSRRRIIRGLELKKFGENLENTESGYEPLY 181
Query: 154 LWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFD--PNADYSKGVRKAIGVPEFDLYFK 211
+ + VL +++RVD+M+ G++DEV + P A + G IG EF F
Sbjct: 182 ICLTDDRQVLYDRINQRVDKMMAAGLLDEVSWLYQEHPEAQAAMG----IGYKEF---F- 233
Query: 212 MEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNI 258
P+L E Q L++AI VK N+ + A RQL R M V + +
Sbjct: 234 --PYL--EGQIS-LKEAIDNVKQNSRRFAKRQLTWFRNRMAVDFYQV 275
>sp|Q1JH90|MIAA_STRPD tRNA dimethylallyltransferase OS=Streptococcus pyogenes serotype M2
(strain MGAS10270) GN=miaA PE=3 SV=1
Length = 299
Score = 104 bits (260), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 129/299 (43%), Gaps = 72/299 (24%)
Query: 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHH 90
K K+++++G T GK+ L I +A F EII+ D QVY LDI T K T+EEQ HH
Sbjct: 3 KIKIVVIVGPTAVGKTALGISLAKAFNGEIISGDSQQVYRQLDIGTAKATQEEQEAAVHH 62
Query: 91 LLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALV------------ 138
L+ I+ ++A +F A SI +++GK+PIIVGG+ Y+++L+
Sbjct: 63 LIDIREVTESYSAYDFVQDAQKSISDIVSRGKLPIIVGGTGLYLQSLLEGYHLGGQVDQE 122
Query: 139 ------------DDEDYGFRWK---------------------------------YDCCF 153
DD D R + Y+
Sbjct: 123 AVKAYRNELEQLDDHDLYERLQVNNITIEQVNRRRAIRALELAQFADELENAETAYEPLI 182
Query: 154 LWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFD--PNADYSKGVRKAIGVPEFDLYFK 211
+ ++ V+ +++RV+RM++NG+++E + ++ P S+G IG E YF
Sbjct: 183 IGLNDDRQVIYDRINQRVNRMIENGLLEEAKWLYEHYPTVQASRG----IGYKELFPYFV 238
Query: 212 MEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNIHRFDATQVFRIR 270
E L E A +K NT + A RQL R M V I D QV R
Sbjct: 239 GEMTLAE---------ASDQLKQNTRRFAKRQLTWFRNRMAVSFTAITAPDYPQVVHDR 288
>sp|Q9A059|MIAA_STRP1 tRNA dimethylallyltransferase OS=Streptococcus pyogenes serotype M1
GN=miaA PE=3 SV=1
Length = 299
Score = 104 bits (260), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 85/299 (28%), Positives = 129/299 (43%), Gaps = 72/299 (24%)
Query: 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHH 90
K K+++++G T GK+ L I +A F EII+ D QVY LDI T K T+EEQ HH
Sbjct: 3 KIKIVVIVGPTAVGKTALGISLAKAFNGEIISGDSQQVYRQLDIGTAKATQEEQEAAVHH 62
Query: 91 LLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALV------------ 138
L+ I+ ++A +F A SI +++GK+PIIVGG+ Y+++L+
Sbjct: 63 LIDIREVTESYSAYDFVQDAQKSISDIVSRGKLPIIVGGTGLYLQSLLEGYHLGGQVDQE 122
Query: 139 ------------DDEDYGFRWK---------------------------------YDCCF 153
DD D R + Y+
Sbjct: 123 AVKAYRNELEQLDDHDLYERLQVNNITIEQVNRRRAIRALELAQFADELENAETAYEPLI 182
Query: 154 LWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFD--PNADYSKGVRKAIGVPEFDLYFK 211
+ ++ V+ +++RV+RM++NG+++E + ++ P S+G IG E YF
Sbjct: 183 IGLNDDRQVIYDRINQRVNRMIENGLLEEAKWLYEHYPTVQASRG----IGYKELFPYFV 238
Query: 212 MEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNIHRFDATQVFRIR 270
E L E A +K NT + A RQL R M V I D QV R
Sbjct: 239 GEMTLAE---------ASDQLKQNTRRFAKRQLTWFRNRMAVSFTAITAPDYPQVVHDR 288
>sp|C1FNT7|MIAA_CLOBJ tRNA dimethylallyltransferase OS=Clostridium botulinum (strain
Kyoto / Type A2) GN=miaA PE=3 SV=1
Length = 311
Score = 104 bits (260), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 47/110 (42%), Positives = 76/110 (69%)
Query: 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLG 93
+LI+ G T GK+ +SI++A + EII++D +Q+Y+ +DI + KIT++E GIPHHL+
Sbjct: 4 LLIIAGPTAVGKTDISIELAEKLNGEIISADSMQIYKYMDIGSAKITKDEMKGIPHHLID 63
Query: 94 IQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDY 143
+ P+ +F +F +A SI+ NKGK+PIIVGG+ YI +L+ + D+
Sbjct: 64 VVEPHEEFNVSSFKALAEKSIKDIWNKGKLPIIVGGTGLYINSLIYNYDF 113
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 17/105 (16%)
Query: 149 YDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKF----FDPNADYSKGVRKAIGVP 204
Y+ + ++++ VL +++RVD M+ G+I+EV+K + P+ KG IG
Sbjct: 191 YNVNYFILNMNREVLYERINKRVDIMMSKGLIEEVKKLESMGYTPDMQSMKG----IGYK 246
Query: 205 EFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRR 249
E Y + LDE AI +K + A RQL R+
Sbjct: 247 EVLFYLNGDISLDE---------AIYLIKKGSRNYAKRQLTWFRK 282
>sp|Q92C59|MIAA_LISIN tRNA dimethylallyltransferase OS=Listeria innocua serovar 6a
(strain CLIP 11262) GN=miaA PE=3 SV=1
Length = 305
Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 71/112 (63%), Gaps = 2/112 (1%)
Query: 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLG 93
V++++G T GK+ LSI +A F EII+ D +QVY GLDI T KIT EE GI H+L+
Sbjct: 6 VIVIVGPTAVGKTSLSITLAKNFDGEIISGDSMQVYRGLDIGTAKITPEEMDGIKHYLID 65
Query: 94 IQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGF 145
+ P FTA F IES N+GK+PIIVGG+ YI+++ DYGF
Sbjct: 66 VTDPAVPFTAAKFQAETRGLIESIHNRGKLPIIVGGTGLYIQSVF--YDYGF 115
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 149 YDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVPEFDL 208
Y FL +D+ +L ++ RV+ M + G++ E K +D + +R IG E
Sbjct: 186 YQPLFLGLDLDRELLYERINRRVELMFEEGLVSEASKLYDEHLVDVPAIR-GIGYKELFT 244
Query: 209 YFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNV 253
YF L+E A + ++ N+ A RQL R M++
Sbjct: 245 YFDGNSSLEE---------AKELIQKNSRHFAKRQLTWFRNRMDI 280
>sp|Q8CQL3|MIAA_STAES tRNA dimethylallyltransferase OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=miaA PE=1 SV=1
Length = 332
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 76/112 (67%), Gaps = 2/112 (1%)
Query: 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLG 93
+++++G T +GK+ LSI++A +F EII+ D +QVY+G+DI T K+T EE GIPH+++
Sbjct: 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMID 68
Query: 94 IQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGF 145
I P+A F+A F A I+ +GKVPII GG+ YI++L+ +Y F
Sbjct: 69 ILPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLL--YNYAF 118
Score = 38.1 bits (87), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 145 FRWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVP 204
F YD + +++S L +++RVD M+ +G+ +EV+ + + S+ ++ AIG
Sbjct: 192 FTENYDTLLIGIEMSRETLYLRINKRVDIMLGHGLFNEVQHLVEQGFEASQSMQ-AIG-- 248
Query: 205 EFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNIHRF 261
Y ++ P + ++ A++ +K ++ + A RQL + MNV N R
Sbjct: 249 ----YKELVPVIKGNIS---MENAVEKLKQHSRQYAKRQLTWFKNKMNVHWLNKERM 298
>sp|Q5HPN8|MIAA_STAEQ tRNA dimethylallyltransferase OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=miaA PE=3 SV=1
Length = 332
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 76/112 (67%), Gaps = 2/112 (1%)
Query: 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLG 93
+++++G T +GK+ LSI++A +F EII+ D +QVY+G+DI T K+T EE GIPH+++
Sbjct: 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMID 68
Query: 94 IQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGF 145
I P+A F+A F A I+ +GKVPII GG+ YI++L+ +Y F
Sbjct: 69 ILPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLL--YNYAF 118
Score = 38.1 bits (87), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 29/117 (24%), Positives = 58/117 (49%), Gaps = 10/117 (8%)
Query: 145 FRWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVP 204
F YD + +++S L +++RVD M+ +G+ +EV+ + + S+ ++ AIG
Sbjct: 192 FTENYDTLLIGIEMSRETLYLRINKRVDIMLGHGLFNEVQHLVEQGFEASQSMQ-AIG-- 248
Query: 205 EFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNIHRF 261
Y ++ P + ++ A++ +K ++ + A RQL + MNV N R
Sbjct: 249 ----YKELVPVIKGNIS---MENAVEKLKQHSRQYAKRQLTWFKNKMNVHWLNKERM 298
>sp|Q8CXG5|MIAA_OCEIH tRNA dimethylallyltransferase OS=Oceanobacillus iheyensis (strain
DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=miaA PE=3
SV=1
Length = 313
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%)
Query: 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHH 90
KE V+ ++G T GKS L I+MA RF E+I+ D QVY+G+DI T K+T+EE GI HH
Sbjct: 2 KETVISIVGPTAVGKSLLGIEMAKRFNGEVISGDSTQVYKGMDIGTAKVTKEEMDGIMHH 61
Query: 91 LLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALV 138
++ I P+ F+ +F A I+ L +GK+PI+VGGS YI+A++
Sbjct: 62 MIDIISPDESFSVADFQLHAKKCIDDVLGRGKLPILVGGSGLYIQAVL 109
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
Query: 149 YDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVPEFDL 208
Y + +D+ VL +++RVD M+ G+I+EVR D + + + AIG E
Sbjct: 189 YHLILIGLDMDRDVLYDRINQRVDHMIDTGLIEEVRDLIDRGYENCQSMH-AIGYKEIIQ 247
Query: 209 YFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNI 258
+ NQ ++ AI A+K ++ K A RQL R MNV+ + +
Sbjct: 248 HIS-------GNQP--MEYAIDALKQHSRKYAKRQLTWFRNKMNVQWYKM 288
>sp|B1IM66|MIAA_CLOBK tRNA dimethylallyltransferase OS=Clostridium botulinum (strain Okra
/ Type B1) GN=miaA PE=3 SV=1
Length = 311
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 75/110 (68%)
Query: 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLG 93
+LI+ G T GK+ +SI +A + EII++D +Q+Y+ +DI + KIT++E GIPHHL+
Sbjct: 4 LLIIAGPTAVGKTDISIKLAEKLNGEIISADSMQIYKYMDIGSAKITKDEMKGIPHHLID 63
Query: 94 IQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDY 143
+ P+ +F +F D+A SI+ N+GK+PII GG+ YI +L+ + D+
Sbjct: 64 VVEPHEEFNVSSFKDLAEKSIKDIWNRGKLPIIAGGTGLYINSLIYNYDF 113
Score = 37.4 bits (85), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 77/176 (43%), Gaps = 25/176 (14%)
Query: 78 KITEEEQCGIPHHLLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEAL 137
K+ E++ H LL D +++ + ++ + +V I G S S E +
Sbjct: 128 KLAEDKGNEYVHSLL------KDIDEESYEKLYPNDLKRVVRALEVYKITGKSIS--EYI 179
Query: 138 VDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKF----FDPNADY 193
++E + Y+ + ++++ VL +++RVD M+ G+I+EV+K + P+
Sbjct: 180 KENEKKLYDIPYNVNYFILNMNREVLYERINKRVDIMMGKGLIEEVKKLESMGYTPDMQS 239
Query: 194 SKGVRKAIGVPEFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRR 249
KG IG E Y + LDE AI +K + A RQL R+
Sbjct: 240 MKG----IGYKEVLFYLNGDISLDE---------AIYLIKKGSRNYAKRQLTWFRK 282
>sp|Q820U0|MIAA_ENTFA tRNA dimethylallyltransferase OS=Enterococcus faecalis (strain ATCC
700802 / V583) GN=miaA PE=3 SV=1
Length = 309
Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/115 (44%), Positives = 74/115 (64%)
Query: 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHL 91
EKVL+++G T GK+ LSI +A +F EII+ D +QVY LDI T K+TE E+ GIPH+L
Sbjct: 2 EKVLVIVGPTAVGKTALSIALAKKFNGEIISGDSMQVYRSLDIGTAKVTETEKEGIPHYL 61
Query: 92 LGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFR 146
+ + + ++A +F I+ KGK+PIIVGG+ YI++L+ D G R
Sbjct: 62 IDCREVSETYSAADFQKEGRQKIKEITEKGKLPIIVGGTGLYIQSLLYDFQLGSR 116
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Query: 149 YDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFF-DPNADYSKGVRKAIGVPEFD 207
YD L ++ +L +++RVD+M+ G+++E ++ F P+A ++G IG EF
Sbjct: 188 YDYYLLGLETDRALLYERINQRVDQMMTEGLLEEAKQMFQQPHAQAAQG----IGYKEFF 243
Query: 208 LYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNI 258
YF E + L+ A++ VK + + A RQL R M WN+
Sbjct: 244 PYFSGE---------QSLEMAVETVKQQSRRYAKRQLTWFRNRMAAHWWNL 285
>sp|A4FAJ5|MIAA_SACEN tRNA dimethylallyltransferase OS=Saccharopolyspora erythraea
(strain NRRL 23338) GN=miaA PE=3 SV=1
Length = 310
Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 44/114 (38%), Positives = 73/114 (64%)
Query: 27 SRRQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCG 86
SR ++L ++G TGTGKS L++D+A E++N+D +Q+Y+G+DI T K+T E+ G
Sbjct: 7 SRGSAPRLLAIVGPTGTGKSELAVDLAEELGGEVVNADAMQLYKGMDIGTAKLTTAERRG 66
Query: 87 IPHHLLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDD 140
+PHHLL + + + A ++E L G+ P++VGGS Y++A++DD
Sbjct: 67 VPHHLLDVLDVTETASVAAYQRHARHAVEELLEAGRTPLLVGGSGLYVQAVLDD 120
>sp|B1IAK9|MIAA_STRPI tRNA dimethylallyltransferase OS=Streptococcus pneumoniae (strain
Hungary19A-6) GN=miaA PE=3 SV=1
Length = 294
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 124/287 (43%), Gaps = 72/287 (25%)
Query: 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHH 90
K K+++++G T GK+ L+I++A RF E+++ D QVY GLDI T K + EEQ +PHH
Sbjct: 2 KTKIIVIVGPTAVGKTALAIEVAKRFNGEVVSGDSQQVYRGLDIGTAKASPEEQAAVPHH 61
Query: 91 LLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPII----------------VGGSNSYI 134
L+ ++ ++A +F A +IE ++GK+ II +GG Y
Sbjct: 62 LIDVREITESYSAFDFVSEAKMTIEDIQSRGKLAIIAGGTGLYIQSLLEGYHLGGETPYE 121
Query: 135 EALV--------DDEDYGFRWK---------------------------------YDCCF 153
E L DE+ + Y+
Sbjct: 122 EILAYRASLEPYSDEELAHLVEQAGLEIPQFNRRRAMRALEIAHFGQDLENQEILYEPLI 181
Query: 154 LWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFD--PNADYSKGVRKAIGVPEFDLYFK 211
+ +D L ++ RVD M + G++DE + FD PN +KG IG E YF+
Sbjct: 182 ICLDDERSQLYERINHRVDLMFEAGLLDEAKWLFDHSPNVQAAKG----IGYKELFPYFR 237
Query: 212 MEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNI 258
E + ++A +++K T + A RQL R M V + I
Sbjct: 238 GE---------QTFEEARESLKQATRRFAKRQLTWFRNRMQVTFYQI 275
>sp|Q8E4V8|MIAA_STRA3 tRNA dimethylallyltransferase OS=Streptococcus agalactiae serotype
III (strain NEM316) GN=miaA PE=3 SV=1
Length = 296
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 130/284 (45%), Gaps = 72/284 (25%)
Query: 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPH 89
+K K++ ++G T GK+ L I++A F EII+ D QVY+ LDI T K ++EEQ H
Sbjct: 2 RKIKLIAVVGPTAVGKTALGIELAKTFNGEIISGDSQQVYQKLDIGTAKASKEEQEQAYH 61
Query: 90 HLLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIV----------------GGS--- 130
HL+ ++ N +++ +F A +I++ ++KGK+PIIV GG
Sbjct: 62 HLIDVREVNENYSVYDFVKEAKVAIDTIISKGKIPIIVGGTGLYLQSLFEGYHLGGEVNQ 121
Query: 131 ---NSYIEAL--VDDED----------------------------YGFRWK-----YDCC 152
+Y E L + DED +G + YD
Sbjct: 122 ETLKAYREKLESLSDEDLFEKLTEQSIVIPQVNRRRAIRALELAKFGNDLQNSESPYDVL 181
Query: 153 FLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFD--PNADYSKGVRKAIGVPEFDLYF 210
+ ++ VL ++ RVD M+ NG++DE + +D P+ S+G IG E YF
Sbjct: 182 LIGLNDDRQVLYDRINRRVDLMIDNGLLDEAKWLYDNYPSVQASRG----IGYKELFPYF 237
Query: 211 KMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVK 254
+ L+E A+ +K NT + A RQL R MNV+
Sbjct: 238 SKQIPLEE---------AVDKLKQNTRRFAKRQLTWFRNRMNVE 272
>sp|Q9KAC3|MIAA_BACHD tRNA dimethylallyltransferase OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=miaA PE=1 SV=1
Length = 314
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/122 (39%), Positives = 76/122 (62%), Gaps = 9/122 (7%)
Query: 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHH 90
KEK++ ++G T GK++ S+ +A R E+I+ D +QVY G+DI T KIT EE G+PHH
Sbjct: 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHH 61
Query: 91 LLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVD---------DE 141
L+ I+ P+ F+ +F D+A+ I +G++P +VGG+ Y+ A++ DE
Sbjct: 62 LIDIKDPSESFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADE 121
Query: 142 DY 143
DY
Sbjct: 122 DY 123
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 25/123 (20%)
Query: 149 YDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVR-----KAIGV 203
Y+ + + + VL ++ RVD+MV+ G+IDE +K +D +G+R +AIG
Sbjct: 190 YNLVMIGLTMERDVLYDRINRRVDQMVEEGLIDEAKKLYD------RGIRDCQSVQAIG- 242
Query: 204 PEFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNIHRFDA 263
Y +M +LD L++AI +K N+ + A RQL R NV W FD
Sbjct: 243 -----YKEMYDYLDGN---VTLEEAIDTLKRNSRRYAKRQLTWFRNKANVT-W----FDM 289
Query: 264 TQV 266
T V
Sbjct: 290 TDV 292
>sp|Q81JG8|MIAA_BACAN tRNA dimethylallyltransferase OS=Bacillus anthracis GN=miaA PE=3
SV=1
Length = 314
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 73/111 (65%)
Query: 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPH 89
Q+EKV +++G T GK++LSID+A EII+ D +Q+Y +DI T K+T+EE GIPH
Sbjct: 2 QREKVAVIIGPTAVGKTKLSIDLAKALNGEIISGDSMQIYRTMDIGTAKVTKEEMDGIPH 61
Query: 90 HLLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDD 140
+++ I++P F+ F + I +GK+PIIVGG+ YI++++ D
Sbjct: 62 YMVDIKNPEESFSVAEFQERVRKHIREITERGKLPIIVGGTGLYIQSVLFD 112
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 25/121 (20%)
Query: 149 YDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVR-----KAIGV 203
YD + + + +L ++ RVD M+ G+++EV Y++G+R +AIG
Sbjct: 190 YDVSLIGLTMDREMLYDRINLRVDIMMDQGLLEEVEGL------YNRGIRDCQSIQAIGY 243
Query: 204 PEFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNIHRFDA 263
E YF+ L+E A+ +K N+ + A RQL R M+V W FD
Sbjct: 244 KEIYDYFEDRVSLEE---------AVSQLKTNSRRYAKRQLTWFRNKMDVT-W----FDV 289
Query: 264 T 264
T
Sbjct: 290 T 290
>sp|Q2YXR3|MIAA_STAAB tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=miaA PE=3 SV=2
Length = 311
Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 72/105 (68%)
Query: 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLG 93
+++++G T +GK+ LSI++A R EII+ D +QVY+ ++I T K+T EE GIPHHL+
Sbjct: 8 IVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDGIPHHLID 67
Query: 94 IQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALV 138
I +P+ F+A F +A I N+GKVPII GG+ YI++L+
Sbjct: 68 ILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLI 112
Score = 36.2 bits (82), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 57/112 (50%), Gaps = 11/112 (9%)
Query: 145 FRWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVP 204
F YD + +++S L S +++RVD M+ +G+ EV++ + + + + +AIG
Sbjct: 191 FTENYDTLLIGIEMSRKTLYSRINKRVDIMLDHGLFREVQQLVEQGYESCRSM-QAIG-- 247
Query: 205 EFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRW 256
Y ++ P + N + + A+ +K ++ + A RQ+ + M+V W
Sbjct: 248 ----YKELIPVI---NGQMIYEDAVNDLKQHSRQYAKRQMTWFKNKMSV-HW 291
>sp|B7HKR9|MIAA_BACC7 tRNA dimethylallyltransferase OS=Bacillus cereus (strain AH187)
GN=miaA PE=3 SV=1
Length = 317
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 73/111 (65%)
Query: 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPH 89
Q+EKV +++G T GK++LSID+A EII+ D +Q+Y +DI T K+T+EE GIPH
Sbjct: 5 QREKVAVIIGPTAVGKTKLSIDLAKALNGEIISGDSMQIYRTMDIGTAKVTKEEMDGIPH 64
Query: 90 HLLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDD 140
+++ I++P F+ F + I +GK+PIIVGG+ YI++++ D
Sbjct: 65 YMVDIKNPEESFSVAEFQERVRKHIREITERGKLPIIVGGTGLYIQSVLFD 115
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 25/121 (20%)
Query: 149 YDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVR-----KAIGV 203
YD + + + +L ++ RVD M+ G+++EV Y++G+R +AIG
Sbjct: 193 YDVSLIGLTMDREMLYDRINLRVDIMMDQGLLEEVEGL------YNRGIRDCQSIQAIGY 246
Query: 204 PEFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNIHRFDA 263
E YF+ L+E A+ +K N+ + A RQL R M+V W FD
Sbjct: 247 KEIYDYFEDRVSLEE---------AVSQLKTNSRRYAKRQLTWFRNKMDVT-W----FDV 292
Query: 264 T 264
T
Sbjct: 293 T 293
>sp|B9IUM7|MIAA_BACCQ tRNA dimethylallyltransferase OS=Bacillus cereus (strain Q1)
GN=miaA PE=3 SV=1
Length = 317
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 73/111 (65%)
Query: 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPH 89
Q+EKV +++G T GK++LSID+A EII+ D +Q+Y +DI T K+T+EE GIPH
Sbjct: 5 QREKVAVIIGPTAVGKTKLSIDLAKALNGEIISGDSMQIYRTMDIGTAKVTKEEMDGIPH 64
Query: 90 HLLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDD 140
+++ I++P F+ F + I +GK+PIIVGG+ YI++++ D
Sbjct: 65 YMVDIKNPEESFSVAEFQERVRKHIREITERGKLPIIVGGTGLYIQSVLFD 115
Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 25/121 (20%)
Query: 149 YDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVR-----KAIGV 203
YD + + + +L ++ RVD M+ G+++EV Y++G+R +AIG
Sbjct: 193 YDVSLIGLTMDREMLYDRINLRVDIMMDQGLLEEVEGL------YNRGIRDCQSIQAIGY 246
Query: 204 PEFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNIHRFDA 263
E YF+ L+E A+ +K N+ + A RQL R M+V W FD
Sbjct: 247 KEIYDYFEDRVSLEE---------AVSQLKTNSRRYAKRQLTWFRNKMDVT-W----FDV 292
Query: 264 T 264
T
Sbjct: 293 T 293
>sp|P65356|MIAA_STAAW tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain MW2)
GN=miaA PE=3 SV=1
Length = 311
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 74/110 (67%)
Query: 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIP 88
+ K +++++G T +GK+ LSI++A R EII+ D +QVY+ ++I T K+T EE GIP
Sbjct: 3 KNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDGIP 62
Query: 89 HHLLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALV 138
HHL+ I +P+ F+A F +A I N+GKVPII GG+ YI++L+
Sbjct: 63 HHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLI 112
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 11/112 (9%)
Query: 145 FRWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVP 204
F YD L +++S L S +++RVD M+ +G+ EV++ + + + + +AIG
Sbjct: 191 FTENYDTLLLGIEMSRKTLYSRINKRVDIMLDHGLFREVQQLVEQGYESCQSM-QAIG-- 247
Query: 205 EFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRW 256
Y ++ P + N + + A+ +K ++ + A RQ+ + M+V W
Sbjct: 248 ----YKELIPVI---NGQMIYEDAVNDLKQHSRQYAKRQMTWFKNKMSV-HW 291
>sp|A8Z1X3|MIAA_STAAT tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
USA300 / TCH1516) GN=miaA PE=3 SV=1
Length = 311
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 74/110 (67%)
Query: 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIP 88
+ K +++++G T +GK+ LSI++A R EII+ D +QVY+ ++I T K+T EE GIP
Sbjct: 3 KNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDGIP 62
Query: 89 HHLLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALV 138
HHL+ I +P+ F+A F +A I N+GKVPII GG+ YI++L+
Sbjct: 63 HHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLI 112
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 11/112 (9%)
Query: 145 FRWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVP 204
F YD L +++S L S +++RVD M+ +G+ EV++ + + + + +AIG
Sbjct: 191 FTENYDTLLLGIEMSRKTLYSRINKRVDIMLDHGLFREVQQLVEQGYESCQSM-QAIG-- 247
Query: 205 EFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRW 256
Y ++ P + N + + A+ +K ++ + A RQ+ + M+V W
Sbjct: 248 ----YKELIPVI---NGQMIYEDAVNDLKQHSRQYAKRQMTWFKNKMSV-HW 291
>sp|P65355|MIAA_STAAN tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
N315) GN=miaA PE=3 SV=1
Length = 311
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 74/110 (67%)
Query: 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIP 88
+ K +++++G T +GK+ LSI++A R EII+ D +QVY+ ++I T K+T EE GIP
Sbjct: 3 KNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDGIP 62
Query: 89 HHLLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALV 138
HHL+ I +P+ F+A F +A I N+GKVPII GG+ YI++L+
Sbjct: 63 HHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLI 112
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 11/112 (9%)
Query: 145 FRWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVP 204
F YD L +++S L S +++RVD M+ +G+ EV++ + + + + +AIG
Sbjct: 191 FTENYDTLLLGIEMSRKTLYSRINKRVDIMLDHGLFREVQQLVEQGYESCQSM-QAIG-- 247
Query: 205 EFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRW 256
Y ++ P + N + + A+ +K ++ + A RQ+ + M+V W
Sbjct: 248 ----YKELIPVI---NGQMIYEDAVNDLKQHSRQYAKRQMTWFKNKMSV-HW 291
>sp|P65354|MIAA_STAAM tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain Mu50
/ ATCC 700699) GN=miaA PE=1 SV=1
Length = 311
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 74/110 (67%)
Query: 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIP 88
+ K +++++G T +GK+ LSI++A R EII+ D +QVY+ ++I T K+T EE GIP
Sbjct: 3 KNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDGIP 62
Query: 89 HHLLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALV 138
HHL+ I +P+ F+A F +A I N+GKVPII GG+ YI++L+
Sbjct: 63 HHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLI 112
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 11/112 (9%)
Query: 145 FRWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVP 204
F YD L +++S L S +++RVD M+ +G+ EV++ + + + + +AIG
Sbjct: 191 FTENYDTLLLGIEMSRKTLYSRINKRVDIMLDHGLFREVQQLVEQGYESCQSM-QAIG-- 247
Query: 205 EFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRW 256
Y ++ P + N + + A+ +K ++ + A RQ+ + M+V W
Sbjct: 248 ----YKELIPVI---NGQMIYEDAVNDLKQHSRQYAKRQMTWFKNKMSV-HW 291
>sp|A6QGK1|MIAA_STAAE tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain
Newman) GN=miaA PE=3 SV=1
Length = 311
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 74/110 (67%)
Query: 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIP 88
+ K +++++G T +GK+ LSI++A R EII+ D +QVY+ ++I T K+T EE GIP
Sbjct: 3 KNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDGIP 62
Query: 89 HHLLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALV 138
HHL+ I +P+ F+A F +A I N+GKVPII GG+ YI++L+
Sbjct: 63 HHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLI 112
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 11/112 (9%)
Query: 145 FRWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVP 204
F YD L +++S L S +++RVD M+ +G+ EV++ + + + + +AIG
Sbjct: 191 FTENYDTLLLGIEMSRKTLYSRINKRVDIMLDHGLFREVQQLVEQGYESCQSM-QAIG-- 247
Query: 205 EFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRW 256
Y ++ P + N + + A+ +K ++ + A RQ+ + M+V W
Sbjct: 248 ----YKELIPVI---NGQMIYEDAVNDLKQHSRQYAKRQMTWFKNKMSV-HW 291
>sp|Q5HGC9|MIAA_STAAC tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain COL)
GN=miaA PE=3 SV=1
Length = 311
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 74/110 (67%)
Query: 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIP 88
+ K +++++G T +GK+ LSI++A R EII+ D +QVY+ ++I T K+T EE GIP
Sbjct: 3 KNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDGIP 62
Query: 89 HHLLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALV 138
HHL+ I +P+ F+A F +A I N+GKVPII GG+ YI++L+
Sbjct: 63 HHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLI 112
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 11/112 (9%)
Query: 145 FRWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVP 204
F YD L +++S L S +++RVD M+ +G+ EV++ + + + + +AIG
Sbjct: 191 FTENYDTLLLGIEMSRKTLYSRINKRVDIMLDHGLFREVQQLVEQGYESCQSM-QAIG-- 247
Query: 205 EFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRW 256
Y ++ P + N + + A+ +K ++ + A RQ+ + M+V W
Sbjct: 248 ----YKELIPVI---NGQMIYEDAVNDLKQHSRQYAKRQMTWFKNKMSV-HW 291
>sp|A5ISI5|MIAA_STAA9 tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain JH9)
GN=miaA PE=3 SV=1
Length = 311
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 74/110 (67%)
Query: 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIP 88
+ K +++++G T +GK+ LSI++A R EII+ D +QVY+ ++I T K+T EE GIP
Sbjct: 3 KNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDGIP 62
Query: 89 HHLLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALV 138
HHL+ I +P+ F+A F +A I N+GKVPII GG+ YI++L+
Sbjct: 63 HHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLI 112
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 11/112 (9%)
Query: 145 FRWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVP 204
F YD L +++S L S +++RVD M+ +G+ EV++ + + + + +AIG
Sbjct: 191 FTENYDTLLLGIEMSRKTLYSRINKRVDIMLDHGLFREVQQLVEQGYESCQSM-QAIG-- 247
Query: 205 EFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRW 256
Y ++ P + N + + A+ +K ++ + A RQ+ + M+V W
Sbjct: 248 ----YKELIPVI---NGQMIYEDAVNDLKQHSRQYAKRQMTWFKNKMSV-HW 291
>sp|Q2FYZ2|MIAA_STAA8 tRNA dimethylallyltransferase OS=Staphylococcus aureus (strain NCTC
8325) GN=miaA PE=3 SV=1
Length = 311
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/110 (43%), Positives = 74/110 (67%)
Query: 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIP 88
+ K +++++G T +GK+ LSI++A R EII+ D +QVY+ ++I T K+T EE GIP
Sbjct: 3 KNKPFIVVIVGPTASGKTELSIELAKRINGEIISGDSMQVYKHMNIGTAKVTPEEMDGIP 62
Query: 89 HHLLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALV 138
HHL+ I +P+ F+A F +A I N+GKVPII GG+ YI++L+
Sbjct: 63 HHLIDILNPDDTFSAYEFKRLAEDLITDITNRGKVPIIAGGTGLYIQSLI 112
Score = 37.4 bits (85), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 57/112 (50%), Gaps = 11/112 (9%)
Query: 145 FRWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVP 204
F YD L +++S L S +++RVD M+ +G+ EV++ + + + + +AIG
Sbjct: 191 FTENYDTLLLGIEMSRKTLYSRINKRVDIMLDHGLFREVQQLVEQGYESCQSM-QAIG-- 247
Query: 205 EFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRW 256
Y ++ P + N + + A+ +K ++ + A RQ+ + M+V W
Sbjct: 248 ----YKELIPVI---NGQMIYEDAVNDLKQHSRQYAKRQMTWFKNKMSV-HW 291
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 119,713,097
Number of Sequences: 539616
Number of extensions: 4899928
Number of successful extensions: 17050
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 797
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 15577
Number of HSP's gapped (non-prelim): 1307
length of query: 321
length of database: 191,569,459
effective HSP length: 117
effective length of query: 204
effective length of database: 128,434,387
effective search space: 26200614948
effective search space used: 26200614948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)