Query 020775
Match_columns 321
No_of_seqs 289 out of 1951
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 05:03:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020775.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020775hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02748 tRNA dimethylallyltra 100.0 5.5E-73 1.2E-77 563.8 29.5 273 29-306 19-405 (468)
2 PLN02165 adenylate isopentenyl 100.0 2.2E-68 4.8E-73 510.0 29.8 270 29-299 40-334 (334)
3 PRK14729 miaA tRNA delta(2)-is 100.0 6.8E-67 1.5E-71 495.4 24.0 220 30-264 2-288 (300)
4 KOG1384 tRNA delta(2)-isopente 100.0 3.3E-66 7.2E-71 486.9 23.8 269 31-299 6-296 (348)
5 COG0324 MiaA tRNA delta(2)-iso 100.0 8E-65 1.7E-69 480.4 23.7 220 31-264 2-290 (308)
6 TIGR00174 miaA tRNA isopenteny 100.0 2.8E-63 6E-68 468.4 23.3 218 34-265 1-286 (287)
7 PRK00091 miaA tRNA delta(2)-is 100.0 2.2E-61 4.8E-66 460.1 24.2 219 30-262 2-287 (307)
8 PLN02840 tRNA dimethylallyltra 100.0 1.2E-59 2.6E-64 461.8 24.2 225 29-264 18-345 (421)
9 PF01715 IPPT: IPP transferase 100.0 6.1E-54 1.3E-58 399.3 20.2 184 66-263 1-252 (253)
10 PF01745 IPT: Isopentenyl tran 100.0 2.9E-30 6.3E-35 232.2 16.5 213 33-250 2-225 (233)
11 COG0703 AroK Shikimate kinase 99.4 3.2E-13 6.9E-18 118.8 6.2 146 32-211 2-149 (172)
12 PRK00300 gmk guanylate kinase; 99.4 4.2E-13 9.2E-18 119.8 4.7 124 29-171 2-138 (205)
13 PRK04220 2-phosphoglycerate ki 99.4 1E-11 2.2E-16 118.3 14.1 131 29-174 89-239 (301)
14 PRK00131 aroK shikimate kinase 99.3 3.1E-12 6.8E-17 110.2 8.6 134 30-188 2-137 (175)
15 COG0194 Gmk Guanylate kinase [ 99.3 5.1E-13 1.1E-17 118.6 3.6 122 31-171 3-136 (191)
16 TIGR03263 guanyl_kin guanylate 99.3 8.1E-13 1.8E-17 115.5 3.7 121 32-171 1-134 (180)
17 PRK14737 gmk guanylate kinase; 99.3 6.9E-13 1.5E-17 118.3 3.2 123 31-171 3-138 (186)
18 PRK05057 aroK shikimate kinase 99.3 1.1E-11 2.5E-16 108.9 8.7 134 31-189 3-138 (172)
19 PF00625 Guanylate_kin: Guanyl 99.3 7.9E-12 1.7E-16 110.4 6.3 126 31-172 1-137 (183)
20 cd00071 GMPK Guanosine monopho 99.3 4E-12 8.8E-17 107.9 4.1 110 34-159 1-120 (137)
21 COG3265 GntK Gluconate kinase 99.2 1.5E-11 3.2E-16 105.5 7.2 129 38-189 1-130 (161)
22 PRK13946 shikimate kinase; Pro 99.2 1.5E-11 3.3E-16 108.9 7.4 134 31-189 9-144 (184)
23 PRK13948 shikimate kinase; Pro 99.2 9.1E-11 2E-15 104.5 9.6 135 29-189 7-143 (182)
24 smart00072 GuKc Guanylate kina 99.1 7.9E-11 1.7E-15 104.3 6.7 124 32-171 2-136 (184)
25 KOG3354 Gluconate kinase [Carb 99.1 4.3E-10 9.2E-15 97.3 10.7 144 28-189 8-157 (191)
26 TIGR01313 therm_gnt_kin carboh 99.1 1.1E-09 2.4E-14 94.4 12.5 115 35-172 1-116 (163)
27 PRK13947 shikimate kinase; Pro 99.1 2.3E-10 5E-15 99.2 8.0 130 34-189 3-135 (171)
28 PRK10078 ribose 1,5-bisphospho 99.1 6.1E-10 1.3E-14 98.7 10.1 121 32-170 2-131 (186)
29 PRK00625 shikimate kinase; Pro 99.1 3.1E-10 6.7E-15 100.3 8.1 115 34-170 2-116 (173)
30 PLN02199 shikimate kinase 99.1 3.3E-10 7.2E-15 107.7 7.8 133 31-189 101-244 (303)
31 PF13671 AAA_33: AAA domain; P 99.0 7.7E-10 1.7E-14 92.6 8.3 119 34-173 1-121 (143)
32 PRK13949 shikimate kinase; Pro 99.0 4.4E-10 9.6E-15 98.7 7.1 111 34-169 3-113 (169)
33 cd00464 SK Shikimate kinase (S 99.0 5.1E-10 1.1E-14 94.9 7.0 112 35-171 2-113 (154)
34 PRK14738 gmk guanylate kinase; 99.0 3.4E-10 7.3E-15 102.3 6.2 126 29-171 10-146 (206)
35 PRK06217 hypothetical protein; 99.0 3.8E-09 8.3E-14 93.3 12.6 104 33-171 2-105 (183)
36 PRK03731 aroL shikimate kinase 99.0 5.7E-10 1.2E-14 96.9 6.8 131 33-189 3-138 (171)
37 PRK14021 bifunctional shikimat 99.0 1.3E-09 2.9E-14 111.9 9.8 136 31-190 5-144 (542)
38 PLN02772 guanylate kinase 99.0 9.5E-10 2.1E-14 108.2 8.1 122 31-171 134-269 (398)
39 cd02021 GntK Gluconate kinase 99.0 7.6E-09 1.6E-13 87.9 11.8 116 34-172 1-120 (150)
40 PRK11545 gntK gluconate kinase 99.0 5.5E-09 1.2E-13 91.1 10.8 128 38-188 1-129 (163)
41 COG1102 Cmk Cytidylate kinase 98.9 4.4E-09 9.4E-14 91.7 9.1 101 34-171 2-112 (179)
42 PRK06762 hypothetical protein; 98.9 7.3E-09 1.6E-13 89.5 10.4 124 31-189 1-133 (166)
43 PRK09825 idnK D-gluconate kina 98.9 1.7E-08 3.7E-13 89.3 12.2 135 31-189 2-138 (176)
44 PRK13951 bifunctional shikimat 98.9 3.6E-09 7.7E-14 107.5 7.8 128 34-189 2-130 (488)
45 TIGR02322 phosphon_PhnN phosph 98.9 5E-09 1.1E-13 91.6 7.7 121 33-171 2-132 (179)
46 PHA02530 pseT polynucleotide k 98.9 2.7E-08 5.8E-13 94.0 13.1 130 32-182 2-135 (300)
47 PRK05541 adenylylsulfate kinas 98.9 1.7E-08 3.7E-13 88.2 10.5 130 29-189 4-138 (176)
48 cd00227 CPT Chloramphenicol (C 98.8 2.9E-08 6.3E-13 87.0 11.4 129 32-173 2-134 (175)
49 TIGR01360 aden_kin_iso1 adenyl 98.8 9.6E-09 2.1E-13 89.8 8.2 125 31-171 2-128 (188)
50 PRK06547 hypothetical protein; 98.8 2.8E-09 6.2E-14 94.0 4.6 127 30-171 13-139 (172)
51 PF13207 AAA_17: AAA domain; P 98.8 9.5E-09 2.1E-13 83.8 7.4 33 34-66 1-33 (121)
52 PRK08154 anaerobic benzoate ca 98.8 1.1E-08 2.3E-13 98.2 8.8 118 29-171 130-248 (309)
53 TIGR01359 UMP_CMP_kin_fam UMP- 98.8 2.5E-08 5.4E-13 87.3 9.8 38 34-72 1-38 (183)
54 PRK08118 topology modulation p 98.8 3.5E-08 7.6E-13 86.5 10.7 99 33-171 2-100 (167)
55 PF01202 SKI: Shikimate kinase 98.8 6.1E-09 1.3E-13 90.1 5.1 122 41-187 1-124 (158)
56 PRK07261 topology modulation p 98.8 7E-08 1.5E-12 84.8 11.7 99 34-171 2-100 (171)
57 PRK03839 putative kinase; Prov 98.8 2.9E-08 6.3E-13 87.1 9.3 33 34-66 2-34 (180)
58 PRK14530 adenylate kinase; Pro 98.8 3.8E-08 8.3E-13 89.1 10.2 35 32-66 3-37 (215)
59 PRK08233 hypothetical protein; 98.7 8.6E-08 1.9E-12 83.4 10.9 116 31-171 2-119 (182)
60 PLN02200 adenylate kinase fami 98.7 5.8E-08 1.3E-12 89.7 10.2 37 30-66 41-77 (234)
61 TIGR03574 selen_PSTK L-seryl-t 98.7 3.8E-08 8.3E-13 91.0 8.7 126 34-187 1-132 (249)
62 COG0396 sufC Cysteine desulfur 98.7 3.2E-08 7E-13 90.8 7.3 81 29-114 27-109 (251)
63 PRK14531 adenylate kinase; Pro 98.7 8.3E-08 1.8E-12 84.8 9.4 39 33-72 3-41 (183)
64 PRK12338 hypothetical protein; 98.7 2.2E-07 4.9E-12 89.5 12.9 140 30-175 2-155 (319)
65 PRK04182 cytidylate kinase; Pr 98.7 3.7E-08 8.1E-13 85.4 6.8 112 34-171 2-113 (180)
66 cd02024 NRK1 Nicotinamide ribo 98.7 1.2E-07 2.6E-12 84.9 9.9 33 34-66 1-34 (187)
67 TIGR00017 cmk cytidylate kinas 98.7 6.5E-08 1.4E-12 88.5 8.1 39 32-72 2-40 (217)
68 PRK14532 adenylate kinase; Pro 98.7 1.1E-07 2.3E-12 84.0 8.7 33 34-66 2-34 (188)
69 PRK08356 hypothetical protein; 98.6 2.5E-07 5.4E-12 82.6 11.2 119 32-171 5-136 (195)
70 cd01428 ADK Adenylate kinase ( 98.6 1.7E-07 3.7E-12 82.4 9.3 32 35-66 2-33 (194)
71 cd02020 CMPK Cytidine monophos 98.6 2.2E-07 4.8E-12 77.7 9.4 104 34-171 1-104 (147)
72 TIGR01351 adk adenylate kinase 98.6 1.2E-07 2.7E-12 85.4 8.0 124 35-171 2-125 (210)
73 KOG3347 Predicted nucleotide k 98.6 2E-07 4.2E-12 80.5 8.6 108 31-171 6-114 (176)
74 PRK14527 adenylate kinase; Pro 98.6 2E-07 4.2E-12 82.9 9.0 37 30-66 4-40 (191)
75 PF06414 Zeta_toxin: Zeta toxi 98.6 3.9E-07 8.4E-12 81.6 10.6 124 30-174 13-145 (199)
76 PRK12337 2-phosphoglycerate ki 98.6 5.4E-07 1.2E-11 90.6 12.4 132 30-175 253-409 (475)
77 PF13238 AAA_18: AAA domain; P 98.6 7.6E-08 1.6E-12 78.4 4.9 22 35-56 1-22 (129)
78 TIGR02173 cyt_kin_arch cytidyl 98.6 3.4E-07 7.4E-12 78.8 9.2 33 34-66 2-34 (171)
79 TIGR01663 PNK-3'Pase polynucle 98.5 3.9E-07 8.5E-12 93.3 9.8 104 29-171 366-469 (526)
80 PRK01184 hypothetical protein; 98.5 3.8E-07 8.2E-12 80.2 8.3 32 33-65 2-33 (184)
81 PTZ00301 uridine kinase; Provi 98.5 6.3E-07 1.4E-11 81.6 9.9 121 31-171 2-148 (210)
82 PTZ00088 adenylate kinase 1; P 98.5 8.7E-07 1.9E-11 81.8 10.7 125 32-171 6-131 (229)
83 PRK05480 uridine/cytidine kina 98.5 9.5E-07 2.1E-11 79.4 10.7 38 29-66 3-43 (209)
84 PRK14528 adenylate kinase; Pro 98.5 4.1E-07 8.8E-12 80.9 8.1 39 33-72 2-40 (186)
85 COG0572 Udk Uridine kinase [Nu 98.5 2.5E-07 5.5E-12 84.5 6.9 51 32-88 8-61 (218)
86 PRK13477 bifunctional pantoate 98.5 1.4E-06 2.9E-11 89.0 12.8 43 29-73 281-323 (512)
87 cd02027 APSK Adenosine 5'-phos 98.5 1.3E-06 2.8E-11 74.9 10.5 116 34-176 1-121 (149)
88 COG2074 2-phosphoglycerate kin 98.5 2.8E-06 6E-11 79.1 13.2 154 29-211 86-258 (299)
89 PRK00889 adenylylsulfate kinas 98.5 9.8E-07 2.1E-11 77.0 9.8 37 30-66 2-43 (175)
90 cd02025 PanK Pantothenate kina 98.5 1.1E-06 2.4E-11 80.3 10.3 33 34-66 1-40 (220)
91 PRK12339 2-phosphoglycerate ki 98.5 1.8E-06 3.8E-11 78.0 11.2 130 31-173 2-143 (197)
92 PRK04040 adenylate kinase; Pro 98.4 1.5E-06 3.3E-11 77.6 10.4 35 32-66 2-38 (188)
93 PRK00081 coaE dephospho-CoA ki 98.4 1.4E-06 3.1E-11 77.9 10.2 33 33-66 3-35 (194)
94 PRK13808 adenylate kinase; Pro 98.4 4.9E-07 1.1E-11 87.6 7.3 33 34-66 2-34 (333)
95 PRK14731 coaE dephospho-CoA ki 98.4 3.9E-07 8.4E-12 82.5 6.1 36 30-66 3-38 (208)
96 PRK02496 adk adenylate kinase; 98.4 8.6E-07 1.9E-11 78.0 8.1 33 34-66 3-35 (184)
97 PRK03846 adenylylsulfate kinas 98.4 1.8E-06 3.8E-11 77.3 10.1 38 29-66 21-63 (198)
98 COG1936 Predicted nucleotide k 98.4 9.9E-07 2.2E-11 77.8 7.9 103 33-171 1-104 (180)
99 PRK00279 adk adenylate kinase; 98.4 1.4E-06 2.9E-11 78.9 9.1 33 34-66 2-34 (215)
100 PRK06696 uridine kinase; Valid 98.4 3.5E-07 7.6E-12 83.4 5.0 37 30-66 20-61 (223)
101 TIGR00554 panK_bact pantothena 98.4 2.4E-06 5.2E-11 81.5 10.1 133 29-175 59-222 (290)
102 TIGR00152 dephospho-CoA kinase 98.4 1.4E-06 3.1E-11 77.1 8.0 33 34-66 1-33 (188)
103 KOG0707 Guanylate kinase [Nucl 98.3 1.9E-06 4.1E-11 79.1 8.7 128 32-175 37-175 (231)
104 TIGR00235 udk uridine kinase. 98.3 2.4E-06 5.1E-11 76.9 9.2 37 30-66 4-43 (207)
105 PF07931 CPT: Chloramphenicol 98.3 2.7E-06 5.8E-11 75.4 9.2 122 32-174 1-134 (174)
106 cd02023 UMPK Uridine monophosp 98.3 3E-06 6.5E-11 75.4 9.3 38 34-73 1-41 (198)
107 PRK05800 cobU adenosylcobinami 98.3 1E-06 2.2E-11 77.7 6.0 90 33-138 2-93 (170)
108 COG0645 Predicted kinase [Gene 98.3 7.9E-06 1.7E-10 71.9 11.3 115 33-172 2-126 (170)
109 PRK05537 bifunctional sulfate 98.3 3.1E-06 6.7E-11 87.7 9.6 131 29-189 389-528 (568)
110 PLN02459 probable adenylate ki 98.3 7E-06 1.5E-10 77.2 11.0 46 16-66 18-63 (261)
111 PRK05439 pantothenate kinase; 98.3 8.8E-06 1.9E-10 78.4 11.9 130 28-173 82-240 (311)
112 PF01583 APS_kinase: Adenylyls 98.3 2.5E-06 5.4E-11 74.4 7.2 105 31-166 1-116 (156)
113 cd02028 UMPK_like Uridine mono 98.3 5E-06 1.1E-10 73.6 9.2 33 34-66 1-38 (179)
114 PF08433 KTI12: Chromatin asso 98.3 3.9E-06 8.4E-11 79.3 9.0 153 33-211 2-170 (270)
115 PRK07667 uridine kinase; Provi 98.3 1.1E-06 2.4E-11 78.5 5.0 36 31-66 16-56 (193)
116 TIGR00455 apsK adenylylsulfate 98.2 9E-06 1.9E-10 71.6 10.4 111 29-166 15-132 (184)
117 PRK09270 nucleoside triphospha 98.2 2E-05 4.4E-10 72.1 12.8 37 30-66 31-73 (229)
118 PF00485 PRK: Phosphoribulokin 98.2 3.7E-06 8E-11 74.9 7.4 33 34-66 1-42 (194)
119 PRK00698 tmk thymidylate kinas 98.2 4.1E-06 8.9E-11 74.3 7.6 27 31-57 2-28 (205)
120 PRK00023 cmk cytidylate kinase 98.2 4.4E-06 9.4E-11 76.7 7.9 39 31-71 3-41 (225)
121 PLN02674 adenylate kinase 98.2 6.2E-06 1.3E-10 76.9 8.9 36 31-66 30-65 (244)
122 COG4088 Predicted nucleotide k 98.2 5.4E-06 1.2E-10 75.4 7.8 116 33-171 2-123 (261)
123 PRK14730 coaE dephospho-CoA ki 98.2 8.3E-06 1.8E-10 73.3 8.5 34 33-66 2-35 (195)
124 cd02022 DPCK Dephospho-coenzym 98.1 1.3E-05 2.8E-10 70.6 9.3 32 34-66 1-32 (179)
125 COG3709 Uncharacterized compon 98.1 3E-05 6.4E-10 68.0 10.8 113 31-172 4-137 (192)
126 PRK14734 coaE dephospho-CoA ki 98.1 9.5E-06 2.1E-10 73.2 7.9 33 33-66 2-34 (200)
127 PRK14526 adenylate kinase; Pro 98.1 1.4E-05 3.1E-10 72.8 8.5 38 35-73 3-40 (211)
128 PF00406 ADK: Adenylate kinase 98.1 4.8E-06 1E-10 71.0 5.1 30 37-66 1-30 (151)
129 COG1072 CoaA Panthothenate kin 98.1 3.3E-05 7.2E-10 72.8 11.0 127 29-174 79-235 (283)
130 PRK11860 bifunctional 3-phosph 98.1 1.3E-05 2.8E-10 84.5 8.9 40 32-73 442-481 (661)
131 PRK15453 phosphoribulokinase; 98.1 1.8E-05 3.8E-10 75.3 8.8 58 29-87 2-64 (290)
132 cd01672 TMPK Thymidine monopho 98.0 5E-05 1.1E-09 66.3 10.5 24 33-56 1-24 (200)
133 PRK06761 hypothetical protein; 98.0 3.8E-05 8.3E-10 73.0 10.4 133 32-189 3-146 (282)
134 PRK13975 thymidylate kinase; P 98.0 6.4E-05 1.4E-09 66.4 11.2 28 32-59 2-29 (196)
135 PRK05416 glmZ(sRNA)-inactivati 98.0 6.5E-05 1.4E-09 71.7 11.5 29 31-60 5-33 (288)
136 PLN02348 phosphoribulokinase 98.0 2.4E-05 5.2E-10 77.4 8.7 40 30-69 47-106 (395)
137 COG0563 Adk Adenylate kinase a 98.0 4.7E-06 1E-10 74.0 3.3 33 34-66 2-34 (178)
138 PRK07429 phosphoribulokinase; 98.0 8E-05 1.7E-09 72.3 11.6 37 30-66 6-45 (327)
139 TIGR00041 DTMP_kinase thymidyl 98.0 2E-05 4.2E-10 69.6 6.8 27 32-58 3-29 (195)
140 cd01673 dNK Deoxyribonucleosid 98.0 7.6E-05 1.7E-09 65.9 10.5 28 34-61 1-28 (193)
141 COG1428 Deoxynucleoside kinase 97.9 4.2E-05 9.1E-10 69.6 8.3 30 31-60 3-32 (216)
142 KOG3308 Uncharacterized protei 97.9 3.1E-05 6.7E-10 70.0 7.4 38 31-70 3-41 (225)
143 PRK14529 adenylate kinase; Pro 97.9 4.6E-05 1E-09 70.1 8.1 33 34-66 2-34 (223)
144 PF01121 CoaE: Dephospho-CoA k 97.9 2.6E-05 5.7E-10 69.4 6.2 32 34-66 2-33 (180)
145 PRK05506 bifunctional sulfate 97.9 7.8E-05 1.7E-09 78.2 10.8 111 29-166 457-574 (632)
146 PRK09518 bifunctional cytidyla 97.9 8.1E-05 1.8E-09 79.1 10.9 38 34-73 3-40 (712)
147 cd02030 NDUO42 NADH:Ubiquinone 97.8 0.00017 3.7E-09 65.7 11.1 31 34-64 1-31 (219)
148 PRK03333 coaE dephospho-CoA ki 97.8 4.4E-05 9.6E-10 75.8 7.7 33 33-66 2-34 (395)
149 cd02026 PRK Phosphoribulokinas 97.8 0.00015 3.3E-09 68.6 10.5 33 34-66 1-36 (273)
150 PLN02318 phosphoribulokinase/u 97.8 2.2E-05 4.7E-10 81.3 5.1 37 30-66 63-100 (656)
151 PHA00729 NTP-binding motif con 97.8 0.00012 2.6E-09 67.5 9.4 25 33-57 18-42 (226)
152 COG0237 CoaE Dephospho-CoA kin 97.8 0.00013 2.9E-09 66.1 9.3 34 32-66 2-35 (201)
153 PLN02842 nucleotide kinase 97.8 7.5E-05 1.6E-09 76.1 8.5 31 36-66 1-31 (505)
154 TIGR03575 selen_PSTK_euk L-ser 97.8 0.00011 2.3E-09 71.8 9.1 33 34-66 1-39 (340)
155 PRK13973 thymidylate kinase; P 97.8 8.6E-05 1.9E-09 67.3 8.0 31 31-61 2-35 (213)
156 PRK14732 coaE dephospho-CoA ki 97.8 4.7E-05 1E-09 68.6 6.1 32 34-66 1-32 (196)
157 COG0283 Cmk Cytidylate kinase 97.7 2.1E-05 4.6E-10 71.7 3.3 40 32-73 4-43 (222)
158 PF00004 AAA: ATPase family as 97.7 2.9E-05 6.4E-10 63.2 3.9 32 35-66 1-32 (132)
159 TIGR02881 spore_V_K stage V sp 97.7 0.00016 3.5E-09 67.4 9.3 26 31-56 41-66 (261)
160 PRK09087 hypothetical protein; 97.7 0.00024 5.2E-09 65.3 9.8 34 32-65 44-77 (226)
161 PF13173 AAA_14: AAA domain 97.7 4.2E-05 9E-10 63.6 4.1 37 32-68 2-42 (128)
162 PLN02422 dephospho-CoA kinase 97.7 9.2E-05 2E-09 68.5 6.6 33 33-66 2-34 (232)
163 smart00382 AAA ATPases associa 97.7 5.4E-05 1.2E-09 60.6 4.2 27 32-58 2-28 (148)
164 COG0529 CysC Adenylylsulfate k 97.6 0.00041 8.9E-09 61.8 9.1 38 29-66 20-62 (197)
165 PF00448 SRP54: SRP54-type pro 97.6 5.6E-05 1.2E-09 68.1 3.4 35 32-66 1-40 (196)
166 PF13189 Cytidylate_kin2: Cyti 97.6 0.00028 6E-09 62.4 7.8 125 34-170 1-134 (179)
167 KOG3079 Uridylate kinase/adeny 97.6 0.00057 1.2E-08 61.1 9.6 38 29-66 5-42 (195)
168 PRK14733 coaE dephospho-CoA ki 97.5 7.7E-05 1.7E-09 67.8 4.1 36 31-66 5-40 (204)
169 cd02019 NK Nucleoside/nucleoti 97.5 8.6E-05 1.9E-09 55.5 3.7 23 34-56 1-23 (69)
170 COG4639 Predicted kinase [Gene 97.5 0.00043 9.4E-09 60.3 8.4 113 32-170 2-117 (168)
171 PRK06893 DNA replication initi 97.5 0.00035 7.7E-09 64.0 8.4 91 31-130 38-133 (229)
172 PRK13974 thymidylate kinase; P 97.5 0.00031 6.8E-09 63.6 7.4 27 31-57 2-28 (212)
173 PLN02924 thymidylate kinase 97.5 0.0007 1.5E-08 62.1 9.2 29 30-58 14-42 (220)
174 KOG2702 Predicted panthothenat 97.4 0.00014 3E-09 67.3 3.8 138 30-188 117-297 (323)
175 COG0125 Tmk Thymidylate kinase 97.4 0.00043 9.3E-09 63.1 7.0 133 31-173 2-151 (208)
176 cd00544 CobU Adenosylcobinamid 97.4 0.00026 5.5E-09 62.4 5.2 90 34-139 1-91 (169)
177 PRK08903 DnaA regulatory inact 97.4 0.0014 3E-08 59.5 10.1 37 30-66 40-81 (227)
178 PRK13976 thymidylate kinase; P 97.4 0.00052 1.1E-08 62.4 7.2 25 33-57 1-25 (209)
179 PTZ00451 dephospho-CoA kinase; 97.4 0.00015 3.3E-09 67.6 3.7 34 33-66 2-35 (244)
180 TIGR00390 hslU ATP-dependent p 97.4 0.00019 4.1E-09 71.8 4.6 38 31-68 46-83 (441)
181 COG4619 ABC-type uncharacteriz 97.3 0.00022 4.8E-09 63.3 4.3 45 29-78 26-71 (223)
182 KOG3877 NADH:ubiquinone oxidor 97.3 0.0034 7.4E-08 59.6 12.2 150 30-188 69-260 (393)
183 cd00009 AAA The AAA+ (ATPases 97.3 0.00024 5.1E-09 57.6 4.0 34 31-64 18-54 (151)
184 PF06309 Torsin: Torsin; Inte 97.3 0.00065 1.4E-08 57.2 6.5 73 27-121 48-120 (127)
185 PRK08084 DNA replication initi 97.3 0.00084 1.8E-08 61.9 7.8 126 31-171 44-180 (235)
186 PF07728 AAA_5: AAA domain (dy 97.3 0.00021 4.5E-09 59.7 3.4 26 35-60 2-27 (139)
187 PRK06620 hypothetical protein; 97.3 0.0015 3.2E-08 59.6 9.2 30 33-62 45-74 (214)
188 cd02029 PRK_like Phosphoribulo 97.3 0.00018 4E-09 67.9 3.1 35 34-68 1-40 (277)
189 PRK05201 hslU ATP-dependent pr 97.2 0.00024 5.1E-09 71.1 3.7 35 32-66 50-84 (443)
190 COG1120 FepC ABC-type cobalami 97.2 0.00045 9.8E-09 64.9 5.2 29 29-57 25-53 (258)
191 COG1219 ClpX ATP-dependent pro 97.2 0.00031 6.6E-09 67.8 3.6 36 32-67 97-132 (408)
192 COG2256 MGS1 ATPase related to 97.2 0.0011 2.3E-08 65.7 7.4 188 32-246 48-249 (436)
193 PLN03046 D-glycerate 3-kinase; 97.2 0.001 2.3E-08 66.5 7.5 36 31-66 211-251 (460)
194 cd01130 VirB11-like_ATPase Typ 97.2 0.0002 4.3E-09 63.4 2.0 37 21-57 14-50 (186)
195 PF07724 AAA_2: AAA domain (Cd 97.1 0.0004 8.6E-09 61.2 3.7 34 32-65 3-40 (171)
196 PRK12723 flagellar biosynthesi 97.1 0.0019 4.1E-08 64.2 8.8 36 30-65 172-216 (388)
197 PRK14722 flhF flagellar biosyn 97.1 0.0016 3.5E-08 64.4 8.2 38 29-66 134-178 (374)
198 PF05496 RuvB_N: Holliday junc 97.1 0.00062 1.3E-08 62.9 4.9 29 32-60 50-78 (233)
199 PRK05642 DNA replication initi 97.1 0.0026 5.6E-08 58.6 9.0 127 33-171 46-179 (234)
200 PRK12269 bifunctional cytidyla 97.1 0.00028 6E-09 76.4 2.7 40 32-73 34-73 (863)
201 KOG0744 AAA+-type ATPase [Post 97.1 0.0016 3.6E-08 63.0 7.4 30 30-59 175-204 (423)
202 PRK07933 thymidylate kinase; V 97.1 0.0035 7.7E-08 57.0 9.3 25 33-57 1-25 (213)
203 PF13521 AAA_28: AAA domain; P 97.1 0.00052 1.1E-08 59.1 3.6 26 35-61 2-27 (163)
204 cd00820 PEPCK_HprK Phosphoenol 97.0 0.00063 1.4E-08 55.7 3.8 24 30-53 13-36 (107)
205 PLN02796 D-glycerate 3-kinase 97.0 0.0007 1.5E-08 66.1 4.5 37 30-66 98-139 (347)
206 COG1126 GlnQ ABC-type polar am 97.0 0.00055 1.2E-08 62.8 3.3 26 29-54 25-50 (240)
207 PF00308 Bac_DnaA: Bacterial d 97.0 0.0011 2.3E-08 60.7 5.2 131 33-170 35-177 (219)
208 smart00763 AAA_PrkA PrkA AAA d 97.0 0.00051 1.1E-08 67.4 3.3 28 30-57 76-103 (361)
209 PTZ00202 tuzin; Provisional 97.0 0.0019 4.1E-08 65.2 7.2 80 31-127 285-366 (550)
210 CHL00181 cbbX CbbX; Provisiona 97.0 0.0035 7.6E-08 59.7 8.7 26 31-56 58-83 (287)
211 PRK14956 DNA polymerase III su 97.0 0.0063 1.4E-07 62.0 10.9 28 32-59 40-67 (484)
212 cd01918 HprK_C HprK/P, the bif 97.0 0.00061 1.3E-08 59.0 3.1 39 31-70 13-51 (149)
213 COG1341 Predicted GTPase or GT 97.0 0.0049 1.1E-07 61.0 9.8 110 29-140 70-198 (398)
214 cd01131 PilT Pilus retraction 96.9 0.00061 1.3E-08 61.1 3.1 24 34-57 3-26 (198)
215 PRK05342 clpX ATP-dependent pr 96.9 0.00067 1.4E-08 67.9 3.6 35 32-66 108-142 (412)
216 PF13401 AAA_22: AAA domain; P 96.9 0.00067 1.5E-08 55.5 2.8 27 30-56 2-28 (131)
217 TIGR00150 HI0065_YjeE ATPase, 96.8 0.0011 2.4E-08 56.3 3.8 37 29-65 19-56 (133)
218 PF00005 ABC_tran: ABC transpo 96.8 0.00076 1.6E-08 55.9 2.7 29 29-57 8-36 (137)
219 TIGR00750 lao LAO/AO transport 96.8 0.0044 9.4E-08 59.2 8.3 38 29-66 31-73 (300)
220 PRK14961 DNA polymerase III su 96.8 0.0057 1.2E-07 60.0 9.2 29 31-59 37-65 (363)
221 PRK14086 dnaA chromosomal repl 96.8 0.0061 1.3E-07 63.7 9.8 146 34-189 316-476 (617)
222 PRK10416 signal recognition pa 96.8 0.0011 2.3E-08 64.2 3.9 36 30-65 112-152 (318)
223 PF13555 AAA_29: P-loop contai 96.8 0.0013 2.7E-08 48.8 3.4 25 32-56 23-47 (62)
224 COG1419 FlhF Flagellar GTP-bin 96.8 0.001 2.3E-08 65.9 3.9 35 31-65 202-243 (407)
225 COG1136 SalX ABC-type antimicr 96.8 0.00095 2.1E-08 61.6 3.3 27 29-55 28-54 (226)
226 TIGR00382 clpX endopeptidase C 96.8 0.0011 2.4E-08 66.3 4.0 33 33-65 117-149 (413)
227 COG1220 HslU ATP-dependent pro 96.8 0.00095 2.1E-08 64.9 3.4 36 30-65 48-83 (444)
228 PRK11889 flhF flagellar biosyn 96.8 0.0012 2.5E-08 65.9 4.1 35 31-65 240-279 (436)
229 COG1117 PstB ABC-type phosphat 96.8 0.0017 3.7E-08 59.6 4.8 53 29-83 30-85 (253)
230 TIGR03499 FlhF flagellar biosy 96.8 0.00091 2E-08 63.4 3.1 36 30-65 192-234 (282)
231 PHA02624 large T antigen; Prov 96.8 0.0012 2.5E-08 68.8 4.0 37 27-63 426-462 (647)
232 PRK08727 hypothetical protein; 96.8 0.0064 1.4E-07 55.9 8.6 24 32-55 41-64 (233)
233 PF06068 TIP49: TIP49 C-termin 96.8 0.0012 2.6E-08 65.0 3.9 40 31-70 49-90 (398)
234 TIGR00064 ftsY signal recognit 96.8 0.0012 2.7E-08 62.3 3.9 36 30-65 70-110 (272)
235 PRK09435 membrane ATPase/prote 96.8 0.0043 9.3E-08 60.4 7.7 52 29-80 53-109 (332)
236 COG2805 PilT Tfp pilus assembl 96.8 0.0028 6E-08 60.9 6.0 28 30-57 123-150 (353)
237 COG1223 Predicted ATPase (AAA+ 96.8 0.01 2.2E-07 56.3 9.6 35 31-65 150-184 (368)
238 COG4185 Uncharacterized protei 96.7 0.0023 5.1E-08 56.2 4.9 35 32-66 2-38 (187)
239 TIGR02640 gas_vesic_GvpN gas v 96.7 0.0013 2.9E-08 61.5 3.7 31 31-61 20-50 (262)
240 PRK08099 bifunctional DNA-bind 96.7 0.0013 2.9E-08 65.5 3.8 29 32-60 219-247 (399)
241 PRK03992 proteasome-activating 96.7 0.0014 3E-08 65.0 3.9 36 30-65 163-198 (389)
242 KOG1969 DNA replication checkp 96.7 0.014 3E-07 61.7 11.3 33 29-61 323-355 (877)
243 COG0410 LivF ABC-type branched 96.7 0.002 4.3E-08 59.5 4.6 54 29-89 26-82 (237)
244 PRK14256 phosphate ABC transpo 96.7 0.005 1.1E-07 56.8 7.4 28 29-56 27-54 (252)
245 PRK13851 type IV secretion sys 96.7 0.00088 1.9E-08 65.5 2.4 34 24-57 154-187 (344)
246 PLN00020 ribulose bisphosphate 96.7 0.0014 3E-08 64.8 3.6 44 27-70 143-186 (413)
247 PRK10751 molybdopterin-guanine 96.7 0.0015 3.1E-08 58.0 3.4 28 30-57 4-31 (173)
248 PRK10867 signal recognition pa 96.7 0.0072 1.6E-07 60.9 8.8 36 30-65 98-139 (433)
249 COG0444 DppD ABC-type dipeptid 96.7 0.0045 9.8E-08 59.6 7.0 57 29-89 28-87 (316)
250 PRK09169 hypothetical protein; 96.7 0.0033 7.1E-08 72.8 6.9 116 32-175 2110-2225(2316)
251 cd03115 SRP The signal recogni 96.7 0.002 4.4E-08 55.8 4.2 32 34-65 2-38 (173)
252 TIGR01242 26Sp45 26S proteasom 96.7 0.002 4.3E-08 63.0 4.5 36 30-65 154-189 (364)
253 TIGR01166 cbiO cobalt transpor 96.7 0.0014 3.1E-08 57.7 3.3 28 29-56 15-42 (190)
254 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.7 0.0015 3.2E-08 58.8 3.4 28 29-56 27-54 (218)
255 cd01394 radB RadB. The archaea 96.7 0.002 4.4E-08 58.0 4.2 30 27-56 14-43 (218)
256 PRK00149 dnaA chromosomal repl 96.6 0.0072 1.6E-07 60.9 8.6 148 33-189 149-310 (450)
257 KOG3220 Similar to bacterial d 96.6 0.0012 2.7E-08 59.8 2.7 33 33-66 2-34 (225)
258 TIGR02782 TrbB_P P-type conjug 96.6 0.0012 2.5E-08 63.4 2.7 28 29-56 129-156 (299)
259 COG1131 CcmA ABC-type multidru 96.6 0.0037 8E-08 59.7 6.1 28 29-56 28-55 (293)
260 PF03215 Rad17: Rad17 cell cyc 96.6 0.0018 4E-08 66.5 4.2 31 31-61 44-74 (519)
261 cd03258 ABC_MetN_methionine_tr 96.6 0.0017 3.7E-08 59.1 3.4 29 29-57 28-56 (233)
262 PRK12724 flagellar biosynthesi 96.6 0.0015 3.2E-08 65.5 3.3 35 31-65 222-262 (432)
263 PF13245 AAA_19: Part of AAA d 96.6 0.0017 3.7E-08 49.8 2.9 26 31-56 9-34 (76)
264 cd03225 ABC_cobalt_CbiO_domain 96.6 0.0016 3.5E-08 58.2 3.3 28 29-56 24-51 (211)
265 cd03292 ABC_FtsE_transporter F 96.6 0.0016 3.5E-08 58.3 3.3 28 29-56 24-51 (214)
266 TIGR03015 pepcterm_ATPase puta 96.6 0.0022 4.8E-08 59.2 4.2 27 31-57 42-68 (269)
267 TIGR02673 FtsE cell division A 96.6 0.0017 3.7E-08 58.2 3.3 28 29-56 25-52 (214)
268 TIGR00960 3a0501s02 Type II (G 96.6 0.0017 3.6E-08 58.4 3.2 28 29-56 26-53 (216)
269 CHL00195 ycf46 Ycf46; Provisio 96.6 0.0018 3.8E-08 66.2 3.8 41 29-69 256-296 (489)
270 cd03269 ABC_putative_ATPase Th 96.6 0.0018 3.9E-08 58.0 3.3 28 29-56 23-50 (210)
271 TIGR02525 plasmid_TraJ plasmid 96.6 0.0056 1.2E-07 60.5 7.0 26 31-56 148-173 (372)
272 cd03261 ABC_Org_Solvent_Resist 96.6 0.0018 3.9E-08 59.1 3.3 28 29-56 23-50 (235)
273 cd03226 ABC_cobalt_CbiO_domain 96.6 0.0018 3.9E-08 57.8 3.2 28 29-56 23-50 (205)
274 cd03259 ABC_Carb_Solutes_like 96.6 0.0019 4.1E-08 58.0 3.3 28 29-56 23-50 (213)
275 PRK14962 DNA polymerase III su 96.5 0.0091 2E-07 60.8 8.6 27 32-58 36-62 (472)
276 PTZ00361 26 proteosome regulat 96.5 0.0023 5E-08 64.5 4.2 35 29-63 214-248 (438)
277 PRK12726 flagellar biosynthesi 96.5 0.0023 4.9E-08 63.6 4.0 36 30-65 204-244 (407)
278 TIGR02211 LolD_lipo_ex lipopro 96.5 0.002 4.4E-08 58.0 3.4 28 29-56 28-55 (221)
279 cd03263 ABC_subfamily_A The AB 96.5 0.0019 4.2E-08 58.1 3.3 28 29-56 25-52 (220)
280 cd03256 ABC_PhnC_transporter A 96.5 0.0019 4.2E-08 58.9 3.3 28 29-56 24-51 (241)
281 TIGR03411 urea_trans_UrtD urea 96.5 0.0061 1.3E-07 55.7 6.6 28 29-56 25-52 (242)
282 TIGR02315 ABC_phnC phosphonate 96.5 0.0019 4.2E-08 59.0 3.3 28 29-56 25-52 (243)
283 cd03235 ABC_Metallic_Cations A 96.5 0.0018 4E-08 58.0 3.1 28 29-56 22-49 (213)
284 TIGR02524 dot_icm_DotB Dot/Icm 96.5 0.0019 4E-08 63.5 3.3 27 30-56 132-158 (358)
285 cd03224 ABC_TM1139_LivF_branch 96.5 0.0019 4.1E-08 58.2 3.2 28 29-56 23-50 (222)
286 TIGR02237 recomb_radB DNA repa 96.5 0.0023 5.1E-08 57.1 3.7 32 25-56 5-36 (209)
287 TIGR01425 SRP54_euk signal rec 96.5 0.0024 5.3E-08 64.1 4.2 36 30-65 98-138 (429)
288 TIGR00635 ruvB Holliday juncti 96.5 0.0026 5.6E-08 60.1 4.2 29 31-59 29-57 (305)
289 PF02223 Thymidylate_kin: Thym 96.5 0.0034 7.3E-08 55.1 4.6 24 149-172 118-141 (186)
290 cd03262 ABC_HisP_GlnQ_permease 96.5 0.0021 4.5E-08 57.5 3.3 28 29-56 23-50 (213)
291 cd03293 ABC_NrtD_SsuB_transpor 96.5 0.0019 4.2E-08 58.3 3.1 28 29-56 27-54 (220)
292 PRK06645 DNA polymerase III su 96.5 0.019 4.1E-07 59.0 10.6 29 31-59 42-70 (507)
293 cd03260 ABC_PstB_phosphate_tra 96.5 0.0021 4.5E-08 58.2 3.3 28 29-56 23-50 (227)
294 cd03229 ABC_Class3 This class 96.5 0.0023 4.9E-08 56.1 3.4 28 29-56 23-50 (178)
295 COG3839 MalK ABC-type sugar tr 96.5 0.0031 6.7E-08 61.5 4.6 28 29-56 26-53 (338)
296 cd03219 ABC_Mj1267_LivG_branch 96.5 0.002 4.4E-08 58.6 3.2 28 29-56 23-50 (236)
297 COG1124 DppF ABC-type dipeptid 96.5 0.0075 1.6E-07 56.2 6.9 28 29-56 30-57 (252)
298 COG1116 TauB ABC-type nitrate/ 96.5 0.0021 4.6E-08 59.9 3.3 28 29-56 26-53 (248)
299 cd03301 ABC_MalK_N The N-termi 96.5 0.0022 4.7E-08 57.5 3.3 28 29-56 23-50 (213)
300 COG1618 Predicted nucleotide k 96.5 0.008 1.7E-07 53.0 6.6 27 30-56 3-29 (179)
301 TIGR00362 DnaA chromosomal rep 96.5 0.011 2.4E-07 58.6 8.6 24 33-56 137-160 (405)
302 cd03222 ABC_RNaseL_inhibitor T 96.5 0.0022 4.8E-08 56.8 3.3 28 29-56 22-49 (177)
303 PRK04195 replication factor C 96.5 0.0026 5.5E-08 64.7 4.1 33 32-64 39-71 (482)
304 COG1703 ArgK Putative periplas 96.5 0.011 2.3E-07 56.8 7.9 97 29-127 48-149 (323)
305 PRK11629 lolD lipoprotein tran 96.5 0.0022 4.8E-08 58.5 3.3 28 29-56 32-59 (233)
306 cd03265 ABC_DrrA DrrA is the A 96.5 0.0023 4.9E-08 57.8 3.3 28 29-56 23-50 (220)
307 PRK14257 phosphate ABC transpo 96.5 0.0037 8E-08 60.6 5.0 28 29-56 105-132 (329)
308 PTZ00454 26S protease regulato 96.5 0.003 6.4E-08 63.0 4.4 36 29-64 176-211 (398)
309 cd03238 ABC_UvrA The excision 96.5 0.0036 7.7E-08 55.5 4.5 26 29-54 18-43 (176)
310 PRK14247 phosphate ABC transpo 96.5 0.0028 6.2E-08 58.3 4.0 28 29-56 26-53 (250)
311 PF07475 Hpr_kinase_C: HPr Ser 96.5 0.0039 8.5E-08 55.1 4.6 39 31-70 17-55 (171)
312 PRK13541 cytochrome c biogenes 96.5 0.0024 5.1E-08 56.8 3.3 29 29-57 23-51 (195)
313 cd03296 ABC_CysA_sulfate_impor 96.5 0.0023 4.9E-08 58.6 3.3 28 29-56 25-52 (239)
314 TIGR03864 PQQ_ABC_ATP ABC tran 96.5 0.0023 5E-08 58.4 3.3 28 29-56 24-51 (236)
315 TIGR02788 VirB11 P-type DNA tr 96.5 0.0017 3.8E-08 62.2 2.6 30 28-57 140-169 (308)
316 cd03246 ABCC_Protease_Secretio 96.5 0.0027 5.9E-08 55.4 3.6 28 29-56 25-52 (173)
317 PRK10584 putative ABC transpor 96.4 0.0024 5.1E-08 57.9 3.3 28 29-56 33-60 (228)
318 TIGR03608 L_ocin_972_ABC putat 96.4 0.0023 5E-08 56.9 3.2 28 29-56 21-48 (206)
319 PRK14088 dnaA chromosomal repl 96.4 0.0098 2.1E-07 60.0 8.0 24 33-56 131-154 (440)
320 PF02367 UPF0079: Uncharacteri 96.4 0.0031 6.7E-08 52.9 3.7 31 29-59 12-42 (123)
321 PRK06995 flhF flagellar biosyn 96.4 0.0027 5.8E-08 64.7 3.9 36 30-65 254-296 (484)
322 cd03230 ABC_DR_subfamily_A Thi 96.4 0.0025 5.4E-08 55.6 3.3 28 29-56 23-50 (173)
323 PRK15177 Vi polysaccharide exp 96.4 0.0025 5.3E-08 57.7 3.3 28 29-56 10-37 (213)
324 TIGR00972 3a0107s01c2 phosphat 96.4 0.0032 6.9E-08 57.9 4.1 28 29-56 24-51 (247)
325 KOG0745 Putative ATP-dependent 96.4 0.0026 5.5E-08 63.7 3.5 37 32-68 226-262 (564)
326 TIGR01650 PD_CobS cobaltochela 96.4 0.0026 5.6E-08 61.8 3.5 31 31-61 63-93 (327)
327 PRK10247 putative ABC transpor 96.4 0.0026 5.7E-08 57.8 3.3 28 29-56 30-57 (225)
328 cd03218 ABC_YhbG The ABC trans 96.4 0.0026 5.7E-08 57.7 3.3 28 29-56 23-50 (232)
329 cd01120 RecA-like_NTPases RecA 96.4 0.0022 4.9E-08 53.4 2.6 23 34-56 1-23 (165)
330 cd03257 ABC_NikE_OppD_transpor 96.4 0.0026 5.6E-08 57.5 3.2 28 29-56 28-55 (228)
331 TIGR01978 sufC FeS assembly AT 96.4 0.0026 5.6E-08 58.1 3.2 27 29-55 23-49 (243)
332 PRK10908 cell division protein 96.4 0.0027 5.9E-08 57.4 3.3 28 29-56 25-52 (222)
333 PRK14242 phosphate transporter 96.4 0.0026 5.6E-08 58.7 3.2 27 29-55 29-55 (253)
334 PRK14237 phosphate transporter 96.4 0.0036 7.7E-08 58.5 4.2 28 29-56 43-70 (267)
335 PRK05703 flhF flagellar biosyn 96.4 0.0028 6.1E-08 63.7 3.7 35 31-65 220-261 (424)
336 COG1121 ZnuC ABC-type Mn/Zn tr 96.4 0.0048 1E-07 57.9 5.0 28 29-56 27-54 (254)
337 cd03114 ArgK-like The function 96.4 0.038 8.3E-07 47.4 10.3 32 34-65 1-37 (148)
338 PRK13538 cytochrome c biogenes 96.4 0.0029 6.2E-08 56.6 3.4 29 29-57 24-52 (204)
339 TIGR01189 ccmA heme ABC export 96.4 0.0028 6.1E-08 56.3 3.3 28 29-56 23-50 (198)
340 PRK14721 flhF flagellar biosyn 96.4 0.0039 8.4E-08 62.6 4.6 36 30-65 189-231 (420)
341 cd03268 ABC_BcrA_bacitracin_re 96.4 0.0028 6E-08 56.7 3.3 28 29-56 23-50 (208)
342 cd03247 ABCC_cytochrome_bd The 96.4 0.0028 6.2E-08 55.4 3.3 28 29-56 25-52 (178)
343 PRK00080 ruvB Holliday junctio 96.4 0.0031 6.8E-08 60.7 3.9 30 31-60 50-79 (328)
344 cd03223 ABCD_peroxisomal_ALDP 96.4 0.0031 6.6E-08 54.8 3.4 29 29-57 24-52 (166)
345 PRK11248 tauB taurine transpor 96.4 0.0028 6E-08 59.0 3.3 28 29-56 24-51 (255)
346 PRK11124 artP arginine transpo 96.4 0.0028 6.1E-08 58.0 3.3 28 29-56 25-52 (242)
347 TIGR01184 ntrCD nitrate transp 96.4 0.0029 6.2E-08 57.8 3.3 28 29-56 8-35 (230)
348 PRK14250 phosphate ABC transpo 96.4 0.0029 6.2E-08 58.2 3.3 28 29-56 26-53 (241)
349 PRK11264 putative amino-acid A 96.4 0.0029 6.2E-08 58.2 3.3 28 29-56 26-53 (250)
350 PRK12727 flagellar biosynthesi 96.3 0.0035 7.7E-08 64.5 4.2 36 30-65 348-390 (559)
351 TIGR03410 urea_trans_UrtE urea 96.3 0.003 6.4E-08 57.4 3.3 28 29-56 23-50 (230)
352 TIGR01526 nadR_NMN_Atrans nico 96.3 0.0032 7E-08 61.0 3.8 30 32-61 162-191 (325)
353 PF05729 NACHT: NACHT domain 96.3 0.0026 5.6E-08 53.6 2.7 25 33-57 1-25 (166)
354 PHA02244 ATPase-like protein 96.3 0.0029 6.3E-08 62.5 3.4 35 30-64 117-151 (383)
355 cd03228 ABCC_MRP_Like The MRP 96.3 0.0033 7.2E-08 54.7 3.5 29 29-57 25-53 (171)
356 COG0466 Lon ATP-dependent Lon 96.3 0.0028 6.1E-08 66.7 3.4 33 30-62 348-380 (782)
357 cd03264 ABC_drug_resistance_li 96.3 0.0027 5.9E-08 56.8 3.0 27 29-56 23-49 (211)
358 PRK13833 conjugal transfer pro 96.3 0.002 4.3E-08 62.5 2.2 28 29-56 141-168 (323)
359 PRK13539 cytochrome c biogenes 96.3 0.0031 6.6E-08 56.6 3.3 28 29-56 25-52 (207)
360 PRK13900 type IV secretion sys 96.3 0.002 4.4E-08 62.6 2.2 29 29-57 157-185 (332)
361 TIGR01241 FtsH_fam ATP-depende 96.3 0.0036 7.9E-08 63.8 4.2 37 29-65 85-121 (495)
362 COG2087 CobU Adenosyl cobinami 96.3 0.0057 1.2E-07 53.9 4.8 93 33-140 1-94 (175)
363 cd03295 ABC_OpuCA_Osmoprotecti 96.3 0.0032 7E-08 57.7 3.5 28 29-56 24-51 (242)
364 PRK10744 pstB phosphate transp 96.3 0.003 6.5E-08 58.7 3.3 28 29-56 36-63 (260)
365 cd03245 ABCC_bacteriocin_expor 96.3 0.0031 6.7E-08 56.8 3.3 28 29-56 27-54 (220)
366 cd03232 ABC_PDR_domain2 The pl 96.3 0.003 6.4E-08 56.1 3.1 27 29-55 30-56 (192)
367 PF00437 T2SE: Type II/IV secr 96.3 0.0033 7.2E-08 58.6 3.6 29 29-57 124-152 (270)
368 PRK14974 cell division protein 96.3 0.0035 7.5E-08 61.2 3.8 35 31-65 139-178 (336)
369 PRK09493 glnQ glutamine ABC tr 96.3 0.0031 6.7E-08 57.7 3.3 28 29-56 24-51 (240)
370 cd03215 ABC_Carb_Monos_II This 96.3 0.0032 7E-08 55.3 3.3 29 29-57 23-51 (182)
371 cd03237 ABC_RNaseL_inhibitor_d 96.3 0.0032 7E-08 58.4 3.4 28 29-56 22-49 (246)
372 PRK14267 phosphate ABC transpo 96.3 0.004 8.7E-08 57.4 4.1 28 29-56 27-54 (253)
373 PRK14251 phosphate ABC transpo 96.3 0.0042 9.1E-08 57.2 4.2 28 29-56 27-54 (251)
374 cd03266 ABC_NatA_sodium_export 96.3 0.0032 6.9E-08 56.6 3.3 28 29-56 28-55 (218)
375 PRK00771 signal recognition pa 96.3 0.0036 7.8E-08 63.1 3.9 37 30-66 93-134 (437)
376 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.3 0.0035 7.6E-08 53.3 3.3 28 29-56 23-50 (144)
377 COG4559 ABC-type hemin transpo 96.3 0.008 1.7E-07 55.3 5.7 44 29-79 24-70 (259)
378 cd03298 ABC_ThiQ_thiamine_tran 96.3 0.0033 7.2E-08 56.3 3.3 28 29-56 21-48 (211)
379 TIGR02770 nickel_nikD nickel i 96.3 0.0032 6.9E-08 57.4 3.2 28 29-56 9-36 (230)
380 PF13191 AAA_16: AAA ATPase do 96.3 0.0025 5.4E-08 55.0 2.4 29 29-57 21-49 (185)
381 PRK10895 lipopolysaccharide AB 96.3 0.0032 7E-08 57.6 3.3 28 29-56 26-53 (241)
382 PRK15093 antimicrobial peptide 96.3 0.0047 1E-07 59.8 4.5 47 29-76 30-77 (330)
383 PRK13540 cytochrome c biogenes 96.3 0.0034 7.4E-08 55.9 3.3 28 29-56 24-51 (200)
384 cd03254 ABCC_Glucan_exporter_l 96.3 0.0035 7.5E-08 56.8 3.4 28 29-56 26-53 (229)
385 PRK09984 phosphonate/organopho 96.3 0.0042 9.1E-08 57.7 4.0 28 29-56 27-54 (262)
386 PRK14241 phosphate transporter 96.3 0.0042 9.1E-08 57.6 4.0 28 29-56 27-54 (258)
387 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.3 0.0033 7.2E-08 57.3 3.3 28 29-56 26-53 (238)
388 COG1224 TIP49 DNA helicase TIP 96.3 0.0031 6.7E-08 61.8 3.1 29 29-57 62-90 (450)
389 PRK14262 phosphate ABC transpo 96.3 0.0034 7.4E-08 57.8 3.3 28 29-56 26-53 (250)
390 cd03234 ABCG_White The White s 96.3 0.0035 7.7E-08 56.8 3.3 28 29-56 30-57 (226)
391 PRK09473 oppD oligopeptide tra 96.3 0.0049 1.1E-07 59.8 4.4 47 29-76 39-85 (330)
392 cd03252 ABCC_Hemolysin The ABC 96.3 0.0035 7.6E-08 57.1 3.3 28 29-56 25-52 (237)
393 TIGR03420 DnaA_homol_Hda DnaA 96.2 0.0039 8.4E-08 56.1 3.5 27 30-56 36-62 (226)
394 TIGR01420 pilT_fam pilus retra 96.2 0.0035 7.6E-08 61.1 3.4 27 31-57 121-147 (343)
395 TIGR03771 anch_rpt_ABC anchore 96.2 0.0039 8.3E-08 56.7 3.5 27 30-56 4-30 (223)
396 cd03214 ABC_Iron-Siderophores_ 96.2 0.0037 8.1E-08 54.8 3.3 28 29-56 22-49 (180)
397 PRK11784 tRNA 2-selenouridine 96.2 0.049 1.1E-06 53.4 11.4 41 30-71 139-179 (345)
398 TIGR00959 ffh signal recogniti 96.2 0.0041 8.9E-08 62.5 4.0 35 31-65 98-138 (428)
399 PRK14274 phosphate ABC transpo 96.2 0.0036 7.8E-08 58.1 3.3 28 29-56 35-62 (259)
400 cd01123 Rad51_DMC1_radA Rad51_ 96.2 0.004 8.7E-08 56.5 3.6 31 25-55 12-42 (235)
401 TIGR02323 CP_lyasePhnK phospho 96.2 0.0036 7.8E-08 57.7 3.3 28 29-56 26-53 (253)
402 PF03205 MobB: Molybdopterin g 96.2 0.0033 7.1E-08 53.7 2.7 24 33-56 1-24 (140)
403 PRK14249 phosphate ABC transpo 96.2 0.0049 1.1E-07 56.8 4.1 29 29-57 27-55 (251)
404 PRK11300 livG leucine/isoleuci 96.2 0.0035 7.6E-08 57.8 3.1 28 29-56 28-55 (255)
405 TIGR02324 CP_lyasePhnL phospho 96.2 0.0038 8.1E-08 56.5 3.3 28 29-56 31-58 (224)
406 TIGR02928 orc1/cdc6 family rep 96.2 0.0094 2E-07 57.6 6.3 27 30-56 38-64 (365)
407 cd03251 ABCC_MsbA MsbA is an e 96.2 0.0037 8.1E-08 56.8 3.3 28 29-56 25-52 (234)
408 cd03244 ABCC_MRP_domain2 Domai 96.2 0.0039 8.4E-08 56.2 3.3 28 29-56 27-54 (221)
409 PRK12323 DNA polymerase III su 96.2 0.023 5E-07 59.9 9.4 28 31-58 37-64 (700)
410 PRK11701 phnK phosphonate C-P 96.2 0.0036 7.7E-08 58.0 3.2 28 29-56 29-56 (258)
411 cd03216 ABC_Carb_Monos_I This 96.2 0.0039 8.4E-08 54.0 3.2 28 29-56 23-50 (163)
412 PRK13342 recombination factor 96.2 0.0044 9.5E-08 61.8 4.0 34 31-64 35-68 (413)
413 cd03233 ABC_PDR_domain1 The pl 96.2 0.0035 7.6E-08 56.1 3.0 29 29-57 30-58 (202)
414 PRK05973 replicative DNA helic 96.2 0.0041 9E-08 57.8 3.5 29 27-55 59-87 (237)
415 PRK11247 ssuB aliphatic sulfon 96.2 0.0037 8.1E-08 58.4 3.3 28 29-56 35-62 (257)
416 PRK12422 chromosomal replicati 96.2 0.0093 2E-07 60.3 6.3 147 33-189 142-301 (445)
417 PRK14244 phosphate ABC transpo 96.2 0.0038 8.3E-08 57.5 3.3 28 29-56 28-55 (251)
418 PRK14261 phosphate ABC transpo 96.2 0.0038 8.2E-08 57.6 3.3 27 29-55 29-55 (253)
419 PRK14248 phosphate ABC transpo 96.2 0.0038 8.3E-08 58.2 3.3 27 29-55 44-70 (268)
420 PRK14255 phosphate ABC transpo 96.2 0.0038 8.3E-08 57.5 3.3 27 29-55 28-54 (252)
421 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.2 0.0038 8.3E-08 56.8 3.2 28 29-56 45-72 (224)
422 TIGR01277 thiQ thiamine ABC tr 96.2 0.0038 8.2E-08 56.1 3.1 28 29-56 21-48 (213)
423 PF13481 AAA_25: AAA domain; P 96.2 0.0029 6.4E-08 55.4 2.4 30 27-56 27-56 (193)
424 cd03297 ABC_ModC_molybdenum_tr 96.2 0.0037 8.1E-08 56.1 3.1 27 29-56 21-47 (214)
425 COG4604 CeuD ABC-type enteroch 96.2 0.0064 1.4E-07 55.4 4.5 43 29-76 24-67 (252)
426 COG1122 CbiO ABC-type cobalt t 96.2 0.0038 8.2E-08 57.9 3.1 28 29-56 27-54 (235)
427 PRK10575 iron-hydroxamate tran 96.2 0.0037 7.9E-08 58.3 3.1 28 29-56 34-61 (265)
428 PRK13648 cbiO cobalt transport 96.2 0.004 8.6E-08 58.2 3.3 28 29-56 32-59 (269)
429 PRK14238 phosphate transporter 96.2 0.005 1.1E-07 57.7 4.0 28 29-56 47-74 (271)
430 PRK10771 thiQ thiamine transpo 96.2 0.004 8.7E-08 56.7 3.2 28 29-56 22-49 (232)
431 PRK14239 phosphate transporter 96.2 0.004 8.6E-08 57.3 3.2 27 29-55 28-54 (252)
432 COG3842 PotA ABC-type spermidi 96.2 0.0039 8.4E-08 61.2 3.3 27 29-55 28-54 (352)
433 cd03248 ABCC_TAP TAP, the Tran 96.2 0.0042 9E-08 56.2 3.3 28 29-56 37-64 (226)
434 cd03253 ABCC_ATM1_transporter 96.2 0.0041 8.9E-08 56.6 3.3 28 29-56 24-51 (236)
435 cd03250 ABCC_MRP_domain1 Domai 96.2 0.0042 9.2E-08 55.4 3.3 28 29-56 28-55 (204)
436 cd03369 ABCC_NFT1 Domain 2 of 96.2 0.0042 9.2E-08 55.5 3.3 28 29-56 31-58 (207)
437 PRK14245 phosphate ABC transpo 96.2 0.0039 8.6E-08 57.4 3.2 27 29-55 26-52 (250)
438 cd03267 ABC_NatA_like Similar 96.2 0.004 8.7E-08 57.0 3.2 28 29-56 44-71 (236)
439 PF03029 ATP_bind_1: Conserved 96.2 0.0031 6.7E-08 58.5 2.5 30 37-66 1-35 (238)
440 PF00910 RNA_helicase: RNA hel 96.2 0.003 6.4E-08 51.1 2.1 23 35-57 1-23 (107)
441 PRK13768 GTPase; Provisional 96.2 0.0053 1.2E-07 57.3 4.1 34 32-65 2-40 (253)
442 PRK14270 phosphate ABC transpo 96.2 0.0042 9.1E-08 57.3 3.3 28 29-56 27-54 (251)
443 PF01926 MMR_HSR1: 50S ribosom 96.1 0.012 2.5E-07 47.5 5.5 21 35-55 2-22 (116)
444 PRK13894 conjugal transfer ATP 96.1 0.0031 6.6E-08 61.1 2.4 28 29-56 145-172 (319)
445 PRK13638 cbiO cobalt transport 96.1 0.0039 8.5E-08 58.3 3.1 28 29-56 24-51 (271)
446 TIGR02868 CydC thiol reductant 96.1 0.004 8.7E-08 63.6 3.4 29 29-57 358-386 (529)
447 TIGR03005 ectoine_ehuA ectoine 96.1 0.0042 9.1E-08 57.3 3.2 28 29-56 23-50 (252)
448 PRK14253 phosphate ABC transpo 96.1 0.0044 9.5E-08 57.0 3.3 28 29-56 26-53 (249)
449 PRK14949 DNA polymerase III su 96.1 0.023 5E-07 61.8 9.2 29 31-59 37-65 (944)
450 PRK13543 cytochrome c biogenes 96.1 0.0046 1E-07 55.8 3.4 28 29-56 34-61 (214)
451 COG1222 RPT1 ATP-dependent 26S 96.1 0.0056 1.2E-07 60.0 4.1 34 29-62 182-215 (406)
452 PRK15056 manganese/iron transp 96.1 0.0042 9.2E-08 58.2 3.2 28 29-56 30-57 (272)
453 CHL00131 ycf16 sulfate ABC tra 96.1 0.004 8.7E-08 57.3 3.0 27 29-55 30-56 (252)
454 COG0411 LivG ABC-type branched 96.1 0.0036 7.8E-08 58.3 2.7 72 29-108 27-101 (250)
455 KOG0734 AAA+-type ATPase conta 96.1 0.011 2.5E-07 60.6 6.4 99 29-132 334-448 (752)
456 cd03294 ABC_Pro_Gly_Bertaine T 96.1 0.0044 9.5E-08 58.0 3.3 28 29-56 47-74 (269)
457 PRK09544 znuC high-affinity zi 96.1 0.0045 9.6E-08 57.6 3.3 28 29-56 27-54 (251)
458 PRK14269 phosphate ABC transpo 96.1 0.0045 9.8E-08 57.0 3.3 28 29-56 25-52 (246)
459 PRK10619 histidine/lysine/argi 96.1 0.0047 1E-07 57.2 3.4 28 29-56 28-55 (257)
460 PRK13547 hmuV hemin importer A 96.1 0.0046 9.9E-08 58.3 3.4 28 29-56 24-51 (272)
461 PRK14273 phosphate ABC transpo 96.1 0.0045 9.8E-08 57.1 3.3 28 29-56 30-57 (254)
462 PRK14259 phosphate ABC transpo 96.1 0.0045 9.7E-08 58.0 3.3 28 29-56 36-63 (269)
463 PF08477 Miro: Miro-like prote 96.1 0.0046 1E-07 49.6 3.0 22 35-56 2-23 (119)
464 PRK11831 putative ABC transpor 96.1 0.0044 9.5E-08 58.0 3.2 28 29-56 30-57 (269)
465 cd03283 ABC_MutS-like MutS-lik 96.1 0.0048 1E-07 55.5 3.3 25 30-54 23-47 (199)
466 PRK11614 livF leucine/isoleuci 96.1 0.0042 9.2E-08 56.7 3.0 28 29-56 28-55 (237)
467 PRK13548 hmuV hemin importer A 96.1 0.0044 9.6E-08 57.6 3.2 28 29-56 25-52 (258)
468 PRK13632 cbiO cobalt transport 96.1 0.0045 9.8E-08 58.0 3.3 28 29-56 32-59 (271)
469 PRK14240 phosphate transporter 96.1 0.0046 1E-07 56.9 3.3 27 29-55 26-52 (250)
470 PRK13649 cbiO cobalt transport 96.1 0.0044 9.5E-08 58.2 3.2 28 29-56 30-57 (280)
471 PRK12402 replication factor C 96.1 0.0052 1.1E-07 58.6 3.6 25 33-57 37-61 (337)
472 PF03308 ArgK: ArgK protein; 96.1 0.018 3.8E-07 54.3 7.1 97 29-127 26-127 (266)
473 TIGR00176 mobB molybdopterin-g 96.1 0.0037 8E-08 54.2 2.4 23 34-56 1-23 (155)
474 COG0464 SpoVK ATPases of the A 96.1 0.0066 1.4E-07 61.7 4.6 38 29-66 273-310 (494)
475 cd00267 ABC_ATPase ABC (ATP-bi 96.1 0.0051 1.1E-07 52.5 3.2 28 29-56 22-49 (157)
476 PRK14235 phosphate transporter 96.1 0.0049 1.1E-07 57.6 3.4 28 29-56 42-69 (267)
477 PF13476 AAA_23: AAA domain; P 96.1 0.0038 8.2E-08 54.3 2.4 30 31-60 18-47 (202)
478 cd04163 Era Era subfamily. Er 96.1 0.0049 1.1E-07 51.0 3.0 24 32-55 3-26 (168)
479 PRK09580 sufC cysteine desulfu 96.1 0.0045 9.7E-08 56.8 3.0 27 29-55 24-50 (248)
480 PRK14964 DNA polymerase III su 96.1 0.057 1.2E-06 55.3 11.2 28 32-59 35-62 (491)
481 PRK06526 transposase; Provisio 96.1 0.0046 1E-07 57.9 3.1 27 30-56 96-122 (254)
482 COG2884 FtsE Predicted ATPase 96.1 0.0092 2E-07 54.0 4.8 28 29-56 25-52 (223)
483 PF10662 PduV-EutP: Ethanolami 96.1 0.0046 1E-07 53.2 2.8 23 33-55 2-24 (143)
484 COG3840 ThiQ ABC-type thiamine 96.0 0.0073 1.6E-07 54.5 4.1 29 28-56 21-49 (231)
485 PRK14260 phosphate ABC transpo 96.0 0.0069 1.5E-07 56.2 4.2 29 29-57 30-58 (259)
486 cd03290 ABCC_SUR1_N The SUR do 96.0 0.0052 1.1E-07 55.4 3.3 28 29-56 24-51 (218)
487 TIGR01188 drrA daunorubicin re 96.0 0.0049 1.1E-07 58.7 3.3 28 29-56 16-43 (302)
488 PRK13645 cbiO cobalt transport 96.0 0.0048 1E-07 58.4 3.1 28 29-56 34-61 (289)
489 cd03213 ABCG_EPDR ABCG transpo 96.0 0.0052 1.1E-07 54.7 3.2 28 29-56 32-59 (194)
490 PRK09183 transposase/IS protei 96.0 0.0051 1.1E-07 57.7 3.2 26 30-55 100-125 (259)
491 PF01695 IstB_IS21: IstB-like 96.0 0.0059 1.3E-07 54.1 3.5 37 29-65 44-85 (178)
492 PRK14958 DNA polymerase III su 96.0 0.03 6.4E-07 57.6 9.0 30 30-59 36-65 (509)
493 TIGR03740 galliderm_ABC gallid 96.0 0.0054 1.2E-07 55.5 3.3 28 29-56 23-50 (223)
494 PRK11231 fecE iron-dicitrate t 96.0 0.0053 1.1E-07 56.8 3.3 28 29-56 25-52 (255)
495 PRK09361 radB DNA repair and r 96.0 0.0062 1.3E-07 55.1 3.7 30 26-55 17-46 (225)
496 cd03231 ABC_CcmA_heme_exporter 96.0 0.0054 1.2E-07 54.8 3.2 28 29-56 23-50 (201)
497 PRK14268 phosphate ABC transpo 96.0 0.0053 1.1E-07 57.0 3.3 28 29-56 35-62 (258)
498 PRK04296 thymidine kinase; Pro 96.0 0.005 1.1E-07 54.9 3.0 25 32-56 2-26 (190)
499 cd03278 ABC_SMC_barmotin Barmo 96.0 0.0054 1.2E-07 55.0 3.2 25 31-56 22-46 (197)
500 COG4608 AppF ABC-type oligopep 96.0 0.0077 1.7E-07 56.9 4.3 41 29-76 36-79 (268)
No 1
>PLN02748 tRNA dimethylallyltransferase
Probab=100.00 E-value=5.5e-73 Score=563.80 Aligned_cols=273 Identities=44% Similarity=0.783 Sum_probs=241.9
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHH
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCD 108 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~ 108 (321)
.+++++|+|+||||||||+||+.||++++++|||+|||||||||||+||||+.+|++||||||+|+++|+++|++++|++
T Consensus 19 ~~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~~ 98 (468)
T PLN02748 19 KGKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFRD 98 (468)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCcEEEEcCchHHHHHHhccccc------------------------c--------------------
Q 020775 109 MASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDY------------------------G-------------------- 144 (321)
Q Consensus 109 ~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~------------------------~-------------------- 144 (321)
+|..+|++|+++|++|||||||+||++||+.|... .
T Consensus 99 ~A~~~I~~I~~rgk~PIlVGGTglYi~aLl~g~~~~~~p~~~~~~~~~~~~~~r~~l~~~~~~~~~g~~~l~~~L~~vDP 178 (468)
T PLN02748 99 HAVPLIEEILSRNGLPVIVGGTNYYIQALVSPFLLDDMAEETEDCTFVVASVLDEHMDVESGLGNDDEDHGYELLKELDP 178 (468)
T ss_pred HHHHHHHHHHhcCCCeEEEcChHHHHHHHHcCcccccCCccccccccccCHHHHHHHHHHHHHHhcCHHHHHHHHHhhCH
Confidence 99999999999999999999999999999975310 0
Q ss_pred -------------------------------cc------------ccCCeEEEEEeCCHHHHHHHHHHhHHHHHhccHHH
Q 020775 145 -------------------------------FR------------WKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMID 181 (321)
Q Consensus 145 -------------------------------~r------------~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml~~Gll~ 181 (321)
+. .+|++++|||++++++|++||++||+.|+++||++
T Consensus 179 ~~A~rihpnD~rRI~RALEI~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~i~l~~~r~~L~~RI~~Rvd~Mle~Glle 258 (468)
T PLN02748 179 VAANRIHPNNHRKINRYLELYATTGVLPSKLYQGKAAENWGRISNSRFDCCFICVDADTAVLDRYVNQRVDCMIDAGLLD 258 (468)
T ss_pred HHHhhcCCccHHHHHHHHHHHHHHCcCHHHHhhhccccccccccCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHCCHHH
Confidence 00 13678899999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCCCccccccHHHHHHhHh--------cCCC-------------------CchHHHHHHHHHHHHHHHH
Q 020775 182 EVRKFFDPNADYSKGVRKAIGVPEFDLYFK--------MEPF-------------------LDEENQAKLLQQAIQAVKY 234 (321)
Q Consensus 182 Ev~~l~~~~~~~~~gi~qaIGykE~~~yl~--------~~~~-------------------~~~~~~~~~l~~~ie~ik~ 234 (321)
|++.|++.+.+++.|+||+||||||.+||+ |+.+ .++.+...++++|++.||.
T Consensus 259 Ev~~l~~~~~~~~~~~~qaIGykE~~~yL~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~eaie~ik~ 338 (468)
T PLN02748 259 EVYDIYDPGADYTRGLRQAIGVREFEDFLRLYLSRNENGELTSSSNNDKVMKENSRKILNFPHDDKLKILLDEAIDQVKL 338 (468)
T ss_pred HHHHHHhcCCCCCcccceeEcHHHHHHHHHhcccccccccccccccccchhhhhhhccccccchhhhhhhHHHHHHHHHH
Confidence 999999887678889999999999999998 2210 1223334589999999999
Q ss_pred HHHHHHHHHHHHHhhhcccCCcceEEecCchhhHhhhcCcchHHHHHhhhhchHHHHHHHHhcCCCCCCCCc
Q 020775 235 NTCKLAFRQLEKIRRLMNVKRWNIHRFDATQVFRIRQHGKAADEAWEKFVAGPSTRLVEEFLYNVPVEVPPA 306 (321)
Q Consensus 235 ~TrqyAkRQ~tW~rr~~~~~~~~i~~lD~t~~~~~~~~~~~~~~~W~~~V~~pa~~iv~~fl~~~~~~~~p~ 306 (321)
+||||||||+|||+++....+|++|++|+|++|... ..+.|++.|.+||++||++||++++++.+++
T Consensus 339 ~Tr~yAKRQ~tw~~rl~~~~~~~i~~lD~t~~~~~~-----~~~~W~~~V~~pa~~iv~~fL~~~~~~~~~~ 405 (468)
T PLN02748 339 NTRRLVRRQKRRLHRLNTVFGWNIHYIDATEAILCK-----SEESWNAKVVKPAVEIVRRFLSDDTSSGPDA 405 (468)
T ss_pred HHHHHHHHHHHHHhhhhhcccCCeeEeechhhhhhc-----cHhHHHHHhHHHHHHHHHHHHcCCCCCCcCc
Confidence 999999999999998765567899999999987522 3589999999999999999999987554444
No 2
>PLN02165 adenylate isopentenyltransferase
Probab=100.00 E-value=2.2e-68 Score=510.02 Aligned_cols=270 Identities=50% Similarity=0.862 Sum_probs=235.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCc-cccHhhHH
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNA-DFTAQNFC 107 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~-~~~~~~f~ 107 (321)
..++++|+|+||||||||+||..||+.++++|||+|+||||+|+||+|+||+.+|+.|++||+++.+++.+ .|++.+|+
T Consensus 40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F~ 119 (334)
T PLN02165 40 NCKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFR 119 (334)
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999987 89999999
Q ss_pred HHHHHHHHHHhhcCCcEEEEcCchHHHHHHhcccc-ccc------------cccCCeEEEEEeCCHHHHHHHHHHhHHHH
Q 020775 108 DMASFSIESTLNKGKVPIIVGGSNSYIEALVDDED-YGF------------RWKYDCCFLWVDVSMPVLRSFVSERVDRM 174 (321)
Q Consensus 108 ~~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~-~~~------------r~~~~~~~i~L~~~~~~L~~RL~~R~~~M 174 (321)
+.+...|+++.++|++||+||||++|+++|+.|.. +.. ..+|+++++||++++++|++||++|++.|
T Consensus 120 ~~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~~dpe~~p~~tg~~~~s~~~~~~~~~i~l~~dr~~L~~RI~~Rvd~M 199 (334)
T PLN02165 120 SLASLSISEITSRQKLPIVAGGSNSFIHALLADRFDPEIYPFSSGSSLISSDLRYDCCFIWVDVSEPVLFEYLSKRVDEM 199 (334)
T ss_pred HHHHHHHHHHHHCCCcEEEECChHHHHHHHHcCCCCCccChhhcCCCccccccCCCeEEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999741 111 13578899999999999999999999999
Q ss_pred HhccHHHHHHHhhcCCCCC--CCCccccccHHHHHHhHhcCCCCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020775 175 VQNGMIDEVRKFFDPNADY--SKGVRKAIGVPEFDLYFKMEPFLD-----EENQAKLLQQAIQAVKYNTCKLAFRQLEKI 247 (321)
Q Consensus 175 l~~Gll~Ev~~l~~~~~~~--~~gi~qaIGykE~~~yl~~~~~~~-----~~~~~~~l~~~ie~ik~~TrqyAkRQ~tW~ 247 (321)
+++||+||++.|++.+.+. +.+++||||||||.+||++....+ +...+..+++|+++++.+||||||||+|||
T Consensus 200 l~~GlldEv~~L~~~~~~~~~~~~~~qaIGYkE~~~yL~~~~~~~~~g~~~~~~~~~l~e~ie~ik~~TrqYAKRQ~TWf 279 (334)
T PLN02165 200 MDSGMFEELAEFYDPVKSGSEPLGIRKAIGVPEFDRYFKKYPPENKMGKWDQARKAAYEEAVREIKENTCQLAKRQIEKI 279 (334)
T ss_pred HHCCHHHHHHHHHHccCCcccCCCceeEEcHHHHHHHHHhccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999875543 568999999999999998321100 011234699999999999999999999999
Q ss_pred hhhcccCCcceEEecCchhhHh----hhcCcchHHHHHhhhhchHHHHHHHHhcCC
Q 020775 248 RRLMNVKRWNIHRFDATQVFRI----RQHGKAADEAWEKFVAGPSTRLVEEFLYNV 299 (321)
Q Consensus 248 rr~~~~~~~~i~~lD~t~~~~~----~~~~~~~~~~W~~~V~~pa~~iv~~fl~~~ 299 (321)
|++.. ..|+++++|+|+++.. ...+....+.|++.|.+||++|+++||+++
T Consensus 280 R~~~~-~~~~~~~lD~t~~~~~~~~~~~~~~~~~~~w~~~v~~~~~~i~~~fl~~~ 334 (334)
T PLN02165 280 MKLKS-AGWDIKRVDATASFRAVMRKKGKKKKWREIWEKDVLEPSVKIVKRFLVED 334 (334)
T ss_pred cCCcc-cCCcEEEEechhhhhhhhcccccccchhhHHHHHHHHHHHHHHHHHhcCC
Confidence 99765 3689999999998642 111234568999999999999999999874
No 3
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=100.00 E-value=6.8e-67 Score=495.43 Aligned_cols=220 Identities=26% Similarity=0.380 Sum_probs=200.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHH
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDM 109 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~ 109 (321)
..+++|+|+||||||||.||.+||++ ++||||+|||||||||||+|||||.+|+++|||||+|+++|++.||+++|.++
T Consensus 2 ~~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~ 80 (300)
T PRK14729 2 KENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKE 80 (300)
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHH
Confidence 45679999999999999999999999 68999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCcEEEEcCchHHHHHHhccccc----------------------------------------------
Q 020775 110 ASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDY---------------------------------------------- 143 (321)
Q Consensus 110 a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~---------------------------------------------- 143 (321)
|.++|++++++|++||+|||||+|+++|++|...
T Consensus 81 a~~~i~~i~~~gk~PilvGGTglYi~all~gl~~~p~~~~~~r~~~~~~~~~~g~~~l~~~L~~~DP~~A~~i~pnd~~R 160 (300)
T PRK14729 81 ALKIIKELRQQKKIPIFVGGSAFYFKHLKYGLPSTPPVSSKIRIYVNNLFTLKGKSYLLEELKRVDFIRYESINKNDIYR 160 (300)
T ss_pred HHHHHHHHHHCCCCEEEEeCchHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHhhCCcCCHHH
Confidence 9999999999999999999999999999988520
Q ss_pred ----------------ccc----ccCCeEEEEEeCCHHHHHHHHHHhHHHHHhccHHHHHHHhhcCCCCCCCCccccccH
Q 020775 144 ----------------GFR----WKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGV 203 (321)
Q Consensus 144 ----------------~~r----~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml~~Gll~Ev~~l~~~~~~~~~gi~qaIGy 203 (321)
++. ..+++++|+|++++++|++||++|++.|+++||++|++.|++.+.+.+.+++|+|||
T Consensus 161 i~RALEv~~~tG~~~s~~~~~~~~~~~~~~i~l~~~r~~L~~rI~~Rv~~Ml~~GlieEv~~l~~~~~~~~~~~~~aIGY 240 (300)
T PRK14729 161 IKRSLEVYYQTGIPISQFLKKQNMFKNILAIGLKRPMEEMKSRIISRVNNMIDCGLLSEIKSLLGKGYNENTPAFKGIGY 240 (300)
T ss_pred HHHHHHHHHHhCCChHhhhhccCCCCCeEEEEeCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcCCCCCCCcceeEcH
Confidence 000 125678899999999999999999999999999999999998776778899999999
Q ss_pred HHHHHhH-hcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcceEEecCc
Q 020775 204 PEFDLYF-KMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNIHRFDAT 264 (321)
Q Consensus 204 kE~~~yl-~~~~~~~~~~~~~~l~~~ie~ik~~TrqyAkRQ~tW~rr~~~~~~~~i~~lD~t 264 (321)
||+.+|| .++.+ +++|++.++.+||||||||+||||+.. +++|+|..
T Consensus 241 kE~~~yl~~g~~~---------l~e~~e~i~~~Tr~yAKRQ~TWfr~~~-----~~~w~~~~ 288 (300)
T PRK14729 241 REFLLWKSRPCYM---------LNDIINLIVKNSFLYVKRQMTFFAKIP-----NVLWFHPD 288 (300)
T ss_pred HHHHHHHhcCCCC---------HHHHHHHHHHHHHHHHHHHHHHcCCCC-----CCeeecCC
Confidence 9999999 66655 899999999999999999999999874 36888853
No 4
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-66 Score=486.90 Aligned_cols=269 Identities=52% Similarity=0.890 Sum_probs=237.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMA 110 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a 110 (321)
+.++|+|+||||||||.||++||.+|++||||+|+||||+|++|+|||++.+|+.||||||+++++|+.+|++++|.++|
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~~a 85 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFEDDA 85 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCcEEEEcCchHHHHHHhccc-cc---ccc---------ccCCeEEEEEeCCHHHHHHHHHHhHHHHHhc
Q 020775 111 SFSIESTLNKGKVPIIVGGSNSYIEALVDDE-DY---GFR---------WKYDCCFLWVDVSMPVLRSFVSERVDRMVQN 177 (321)
Q Consensus 111 ~~~i~~i~~~g~~pIivGGt~~Y~~all~g~-~~---~~r---------~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml~~ 177 (321)
..+|++|++||++||++|||++|+++|+.+. ++ -+. .+|+|||+|++++.++|++|+.+|||.|+++
T Consensus 86 ~~aie~I~~rgk~PIv~GGs~~yi~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~l~~RVD~Ml~~ 165 (348)
T KOG1384|consen 86 SRAIEEIHSRGKLPIVVGGSNSYLQALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFERLDKRVDDMLES 165 (348)
T ss_pred HHHHHHHHhCCCCCEEeCCchhhHHHHhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999872 10 011 2699999999999999999999999999999
Q ss_pred cHHHHHHHhhcC-CCCCCCCccccccHHHHHHhHhcCCC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 020775 178 GMIDEVRKFFDP-NADYSKGVRKAIGVPEFDLYFKMEPF---LDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNV 253 (321)
Q Consensus 178 Gll~Ev~~l~~~-~~~~~~gi~qaIGykE~~~yl~~~~~---~~~~~~~~~l~~~ie~ik~~TrqyAkRQ~tW~rr~~~~ 253 (321)
||+||+++|++. +.++..++.++||+.||+.|++-... ..+.....++++|+++||.+|+||||||.+||.++...
T Consensus 166 Gl~eE~~~f~~~~~s~~~~~i~~~iGv~e~d~f~~~~~~~~~k~d~~~~~~l~~aie~iK~nT~~lakrQ~~~I~~l~~~ 245 (348)
T KOG1384|consen 166 GLLEELRDFYDPYNSSYRSGIRKAIGVPEFDGFKEFYPWLTDKWDLARKELLEKAIEAIKENTRRLAKRQKRKIEKLFLP 245 (348)
T ss_pred chHHHHHHHhhhhhcCccccchhccCcHHHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 999999999987 45566677888888888888764431 11345566899999999999999999999999998765
Q ss_pred CCcceEEecCchhhHhhhc-----CcchHHHHHhhhhchHHHHHHHHhcCC
Q 020775 254 KRWNIHRFDATQVFRIRQH-----GKAADEAWEKFVAGPSTRLVEEFLYNV 299 (321)
Q Consensus 254 ~~~~i~~lD~t~~~~~~~~-----~~~~~~~W~~~V~~pa~~iv~~fl~~~ 299 (321)
..|+++++|+|++|..... +.+....|+..|..|+.+|+++||...
T Consensus 246 ~~~~i~~vdaT~~~~~~~~~~s~~~~~~~~~w~~~v~~ps~~iv~~~l~~~ 296 (348)
T KOG1384|consen 246 RKWDIHRVDATEVFLFAKNRSSWFRIEQREIWNNPVKPPSAKIVKRFLDYY 296 (348)
T ss_pred CCccccccchHHHHHHhhhhhHHhhhccchhhccccccchHHHHHHHHHhh
Confidence 4599999999999875211 124578999999999999999999753
No 5
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8e-65 Score=480.42 Aligned_cols=220 Identities=35% Similarity=0.573 Sum_probs=204.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMA 110 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a 110 (321)
++++|+|+||||||||.||+.||+++|+||||+||||||+||||||+||+.+|++++|||++|+++|.+.||+.+|.++|
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~~a 81 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQRDA 81 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccHHHHHHHH
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCcEEEEcCchHHHHHHhccccc-----------------------------------------------
Q 020775 111 SFSIESTLNKGKVPIIVGGSNSYIEALVDDEDY----------------------------------------------- 143 (321)
Q Consensus 111 ~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~----------------------------------------------- 143 (321)
...|++|.++|++||+||||++|+++|++|...
T Consensus 82 ~~~i~~i~~rgk~pIlVGGTglY~~aL~~g~~~~p~~~~~~r~~~~~~~~~~g~~~L~~~L~~~Dp~~a~~i~pnD~~Ri 161 (308)
T COG0324 82 LAAIDDILARGKLPILVGGTGLYLKALLEGLSLLPEADPEVRRRLEAELAELGNDALHAELKKIDPEAAAKIHPNDPQRI 161 (308)
T ss_pred HHHHHHHHhCCCCcEEEccHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHHhcCCCchhHH
Confidence 999999999999999999999999999998520
Q ss_pred ---------------cc--c-----ccCCeEEEEEeCCHHHHHHHHHHhHHHHHhccHHHHHHHhhcCCCCCCCCccccc
Q 020775 144 ---------------GF--R-----WKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAI 201 (321)
Q Consensus 144 ---------------~~--r-----~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml~~Gll~Ev~~l~~~~~~~~~gi~qaI 201 (321)
++ + ..+++.+++|.++++.|++||+.|++.|+++||++||+.|++.+.+.+.+++|+|
T Consensus 162 ~RALEv~~~tGk~~s~~~~~~~~~~~~~~~~~~~l~~~r~~L~~rI~~R~d~Ml~~Gli~EV~~L~~~g~~~~~~~~~~i 241 (308)
T COG0324 162 IRALEVYYLTGKPISELQKRSRPILEPYDILIIALAADREVLYERINRRVDAMLEQGLIEEVKALYARGLHLDLPAMQAI 241 (308)
T ss_pred HHHHHHHHHHCCCHHHHhhcccCCCCCcceEEEEEeCCHHHHHHHHHHHHHHHHHccHHHHHHHHHhccCCccchHHHhc
Confidence 00 0 1467899999999999999999999999999999999999998877888999999
Q ss_pred cHHHHHHhHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcceEEecCc
Q 020775 202 GVPEFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNIHRFDAT 264 (321)
Q Consensus 202 GykE~~~yl~~~~~~~~~~~~~~l~~~ie~ik~~TrqyAkRQ~tW~rr~~~~~~~~i~~lD~t 264 (321)
||||+.+||+|..+ +++|++.++.+||||||||+||||+... ++|+|..
T Consensus 242 Gy~e~~~yl~g~~~---------~~ea~~~~~~~TRqyAKRQ~TWfr~~~~-----~~w~~~~ 290 (308)
T COG0324 242 GYKEILAYLDGGIS---------LEEAIERIKTATRQYAKRQLTWFRNQLG-----VHWLDSE 290 (308)
T ss_pred CHHHHHHHHhCCCC---------HHHHHHHHHHHHHHHHHHHHHHhccCcc-----cceeccC
Confidence 99999999998866 8999999999999999999999998753 5777754
No 6
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=100.00 E-value=2.8e-63 Score=468.43 Aligned_cols=218 Identities=34% Similarity=0.554 Sum_probs=201.9
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHHHH
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMASFS 113 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~~~ 113 (321)
+|+|+||||||||+||..||+.++++|||+||||||++|||+|+||+++|++|+||||+|+++|.+.|++++|.+.|.+.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~~a~~~ 80 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQTLALNA 80 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCcEEEEcCchHHHHHHhccccc--------------------------------------------------
Q 020775 114 IESTLNKGKVPIIVGGSNSYIEALVDDEDY-------------------------------------------------- 143 (321)
Q Consensus 114 i~~i~~~g~~pIivGGt~~Y~~all~g~~~-------------------------------------------------- 143 (321)
|+++.++|++||+||||++|++||+.|...
T Consensus 81 i~~~~~~g~~pi~vGGTg~Yi~all~g~~~~p~~~~~~r~~l~~~~~~~g~~~l~~~L~~~DP~~a~~i~~nd~~Ri~RA 160 (287)
T TIGR00174 81 IADITARGKIPLLVGGTGLYLKALLEGLSPTPSADKLIREQLEILAEEQGWDFLYNELKKVDPVAAAKIHPNDTRRVQRA 160 (287)
T ss_pred HHHHHhCCCCEEEEcCcHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHhcCHHHHHhcCCccHHHHHHH
Confidence 999999999999999999999999988520
Q ss_pred ------------ccc------ccCCeEEEEEeCCHHHHHHHHHHhHHHHHhccHHHHHHHhhcCCCCCCCCccccccHHH
Q 020775 144 ------------GFR------WKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVPE 205 (321)
Q Consensus 144 ------------~~r------~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml~~Gll~Ev~~l~~~~~~~~~gi~qaIGykE 205 (321)
.+. ..|++++|||++|++.|++||++|++.|+++||++|++.|++.+.+.+.+++|+|||||
T Consensus 161 LEi~~~tG~~~s~~~~~~~~~~~~~~~~i~l~~dr~~L~~rI~~Rv~~Mi~~Gl~eEv~~l~~~~~~~~~~~~~aIGYkE 240 (287)
T TIGR00174 161 LEVFYATGKPPSELFKEQKIELFYDAVQIGLASSREPLHQRIEQRVHDMLESGLLAEVKALYAQYDLCDLPSIQAIGYKE 240 (287)
T ss_pred HHHHHHHCCChHHHhhccCCCCCCCeEEEEECCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCCcCCchhhhccHHH
Confidence 000 13678889999999999999999999999999999999999876666789999999999
Q ss_pred HHHhHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcceEEecCch
Q 020775 206 FDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNIHRFDATQ 265 (321)
Q Consensus 206 ~~~yl~~~~~~~~~~~~~~l~~~ie~ik~~TrqyAkRQ~tW~rr~~~~~~~~i~~lD~t~ 265 (321)
|++||+++.+ +++|++.++.+||||||||+||||+.. +++|+|.++
T Consensus 241 ~~~~l~g~~~---------~~e~ie~i~~~Tr~yAKRQ~TWfR~~~-----~~~~~~~~~ 286 (287)
T TIGR00174 241 FLLYLEGTVS---------LEDAIERIKCNTRQYAKRQLTWFRKWS-----DVLWLDSTD 286 (287)
T ss_pred HHHHHcCCCC---------HHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCEEeCCCC
Confidence 9999999876 899999999999999999999999875 378888653
No 7
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=100.00 E-value=2.2e-61 Score=460.14 Aligned_cols=219 Identities=36% Similarity=0.571 Sum_probs=202.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHH
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDM 109 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~ 109 (321)
.++++|+|+||||||||+||..||++++++|||+||||+|+++||+|+||+++|++|+||||+|+++|.+.|++++|.++
T Consensus 2 ~~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~ 81 (307)
T PRK00091 2 MKPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRD 81 (307)
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCcEEEEcCchHHHHHHhcccc---------------------------------c-------------
Q 020775 110 ASFSIESTLNKGKVPIIVGGSNSYIEALVDDED---------------------------------Y------------- 143 (321)
Q Consensus 110 a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~---------------------------------~------------- 143 (321)
|.+.|++++++|++||+||||++|+++++.|.. +
T Consensus 82 a~~~i~~i~~~gk~pIlvGGt~~Y~~al~~g~~~~p~~~~~~r~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~i~~~d~~R 161 (307)
T PRK00091 82 ALAAIADILARGKLPILVGGTGLYIKALLEGLSPLPPADPELRAELEALAAEEGWEALHAELAEIDPEAAARIHPNDPQR 161 (307)
T ss_pred HHHHHHHHHhCCCCEEEECcHHHHHHHhccCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHhhcCCCCCch
Confidence 999999999999999999999999999987631 0
Q ss_pred ----------------ccc-----ccCCeEEEEEeCCHHHHHHHHHHhHHHHHhccHHHHHHHhhcCCCCCCCCcccccc
Q 020775 144 ----------------GFR-----WKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIG 202 (321)
Q Consensus 144 ----------------~~r-----~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml~~Gll~Ev~~l~~~~~~~~~gi~qaIG 202 (321)
.+. ..|++++|||++|+++|++||++|++.|+++||++||+.|++.+.+.+.+++|+||
T Consensus 162 i~RAlEi~~~tG~~~s~~~~~~~~~~~~~~~~~l~~dr~~L~~rI~~Rv~~Ml~~Gl~eEv~~l~~~~~~~~~~~~~aIG 241 (307)
T PRK00091 162 IIRALEVYELTGKPLSELQKRGKPPPYRVLIIGLDPDREELYERINQRVDQMLEQGLLEEVRALLARGYLPDLPAMRAIG 241 (307)
T ss_pred hHHHHHHHHHHCCChhhhhhccccCCCCeEEEEEcCCHHHHHHHHHHHHHHHHHCcHHHHHHHHHHcCCCCCCccceeec
Confidence 000 13678899999999999999999999999999999999999876667789999999
Q ss_pred HHHHHHhHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcceEEec
Q 020775 203 VPEFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNIHRFD 262 (321)
Q Consensus 203 ykE~~~yl~~~~~~~~~~~~~~l~~~ie~ik~~TrqyAkRQ~tW~rr~~~~~~~~i~~lD 262 (321)
|||+.+||+|+.+ +++|++.++.+||||||||+||||+.. +++|+|
T Consensus 242 ykE~~~yl~g~~s---------~~e~~e~i~~~Tr~yAKRQ~TWfr~~~-----~~~w~~ 287 (307)
T PRK00091 242 YKELLAYLDGEIS---------LEEAIEKIKQATRQYAKRQLTWFRRQP-----DIHWLD 287 (307)
T ss_pred HHHHHHHHcCCCC---------HHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCeeec
Confidence 9999999999876 899999999999999999999999875 478888
No 8
>PLN02840 tRNA dimethylallyltransferase
Probab=100.00 E-value=1.2e-59 Score=461.83 Aligned_cols=225 Identities=30% Similarity=0.487 Sum_probs=199.8
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHH
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCD 108 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~ 108 (321)
..++++|+|+||||||||+||..||++++++|||+|++|+|++++|+|+||+.+|+++|||||+|+++|.++|++++|.+
T Consensus 18 ~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~~ 97 (421)
T PLN02840 18 TKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFFD 97 (421)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHHH
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCcEEEEcCchHHHHHHhccccc---------------------------------------------
Q 020775 109 MASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDY--------------------------------------------- 143 (321)
Q Consensus 109 ~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~--------------------------------------------- 143 (321)
+|.++|++|+++|++|||||||++|+++|+.|...
T Consensus 98 ~A~~~I~~i~~rgkiPIvVGGTGlYl~aLl~G~~~~p~~~~~~r~~l~~~l~~~~~~~g~~~l~~~Ll~~~DP~A~~i~p 177 (421)
T PLN02840 98 DARRATQDILNRGRVPIVAGGTGLYLRWYIYGKPDVPKSSPEITSEVWSELVDFQKNGDWDAAVELVVNAGDPKARSLPR 177 (421)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhccccCHHHHHHHHHhccCcHHHhcCC
Confidence 99999999999999999999999999999987410
Q ss_pred ---------------------ccc----------------------------ccCCeEEEEEeCCHHHHHHHHHHhHHHH
Q 020775 144 ---------------------GFR----------------------------WKYDCCFLWVDVSMPVLRSFVSERVDRM 174 (321)
Q Consensus 144 ---------------------~~r----------------------------~~~~~~~i~L~~~~~~L~~RL~~R~~~M 174 (321)
++. ..|++++|+|++++++|++||++|++.|
T Consensus 178 nD~~Ri~RALEV~~~TG~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~i~L~~dR~~Ly~RI~~Rvd~M 257 (421)
T PLN02840 178 NDWYRLRRSLEIIKSSGSPPSAFSLPYDSFREQLVTEDTDSSLEDGSSAETELDYDFLCFFLSSPRLDLYRSIDLRCEEM 257 (421)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHhhccccchhhccccccccccccccccccCCCCCCeEEEEeCCCHHHHHHHHHHHHHHH
Confidence 010 0245678999999999999999999999
Q ss_pred Hh--ccHHHHHHHhhcCCCCCC-CCccccccHHHHHHhHh------cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020775 175 VQ--NGMIDEVRKFFDPNADYS-KGVRKAIGVPEFDLYFK------MEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLE 245 (321)
Q Consensus 175 l~--~Gll~Ev~~l~~~~~~~~-~gi~qaIGykE~~~yl~------~~~~~~~~~~~~~l~~~ie~ik~~TrqyAkRQ~t 245 (321)
++ +||++||+.|++.+.+.+ .+++|+|||||+++||. |+.+.+ .+.++++.++.+||||||||+|
T Consensus 258 l~~~~GLleEV~~Ll~~g~~~~~~~a~~aIGYkE~~~yL~~~~~~~G~~s~e------e~~~~~e~i~~~TRqYAKRQ~T 331 (421)
T PLN02840 258 LAGTNGILSEASWLLDLGLLPNSNSATRAIGYRQAMEYLLQCRQNGGESSPQ------EFLAFLSKFQTASRNFAKRQMT 331 (421)
T ss_pred HHcccCHHHHHHHHHHcCCCccccchHHHhcHHHHHHHHHhhcccCCCCCHH------HHHHHHHHHHHHHHHHHHHHHH
Confidence 99 999999999998765544 58999999999999999 665511 1335669999999999999999
Q ss_pred HHhhhcccCCcceEEecCc
Q 020775 246 KIRRLMNVKRWNIHRFDAT 264 (321)
Q Consensus 246 W~rr~~~~~~~~i~~lD~t 264 (321)
|||+.. .++|+|.+
T Consensus 332 WFR~~~-----~~~w~~~~ 345 (421)
T PLN02840 332 WFRNEP-----IYHWLDAS 345 (421)
T ss_pred HhCCCC-----CCeEecCC
Confidence 999874 47899864
No 9
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=100.00 E-value=6.1e-54 Score=399.30 Aligned_cols=184 Identities=36% Similarity=0.555 Sum_probs=159.5
Q ss_pred ceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHHHHHHHHhhcCCcEEEEcCchHHHHHHhccccc--
Q 020775 66 IQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDY-- 143 (321)
Q Consensus 66 ~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~-- 143 (321)
|||||||||||||||.+|+++|||||+|+++|++.||+++|.++|.++|++|.++|++||||||||+|++||+.|...
T Consensus 1 mQvYr~ldIgTaKps~~e~~~vpHhlid~~~p~e~ysv~~f~~~a~~~i~~i~~rgk~PIlvGGTglYi~all~g~~~~p 80 (253)
T PF01715_consen 1 MQVYRGLDIGTAKPSPEERAGVPHHLIDILDPDEEYSVGDFQRDAREAIEDILARGKIPILVGGTGLYIQALLNGLADIP 80 (253)
T ss_dssp STTBTT-CTTTT---HHHHTTS-EESSS-B-TTS---HHHHHHHHHHHHHHHHHTT-EEEEEES-HHHHHHHHCTS--TS
T ss_pred CCccCCCceeeCCCCHHHHcCCCEeeeeeecccCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHHHhChhhhc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999988520
Q ss_pred ----c--------------------------------------------------------c------cccCCeEEEEEe
Q 020775 144 ----G--------------------------------------------------------F------RWKYDCCFLWVD 157 (321)
Q Consensus 144 ----~--------------------------------------------------------~------r~~~~~~~i~L~ 157 (321)
. + ...+++++|||+
T Consensus 81 ~~~~~~r~~~~~~~~~~~~~~l~~~L~~~DP~~A~~i~~nd~~Ri~RALei~~~tG~~~s~~~~~~~~~~~~~~~~i~L~ 160 (253)
T PF01715_consen 81 EVDPELRAELRAELEEEGNEELYEELKEVDPEAAAKIHPNDRRRIIRALEIYELTGKPPSEWQKKQKPPPRYDFLVIGLD 160 (253)
T ss_dssp SSHHHHHHHHHHHHHHSCHHHHHHHHHHC-HHHHCTS-TT-HHHHHHHHHHHHHHSS-HHHHHHCHHHCBSSEEEEEEEE
T ss_pred cccHHHHHHHHHHHHhccHHHHHHHHHhhCcHhhhcCCCCcHHHHHHHHHHHHhcCCChhHhhhcccccccCCeEEEEeC
Confidence 0 0 024789999999
Q ss_pred CCHHHHHHHHHHhHHHHHhccHHHHHHHhhcCCCCCCCCccccccHHHHHHhHhcCCCCchHHHHHHHHHHHHHHHHHHH
Q 020775 158 VSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVPEFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTC 237 (321)
Q Consensus 158 ~~~~~L~~RL~~R~~~Ml~~Gll~Ev~~l~~~~~~~~~gi~qaIGykE~~~yl~~~~~~~~~~~~~~l~~~ie~ik~~Tr 237 (321)
+++++|++||++|++.|+++||++||+.|++.+.+.+.+++||||||||.+||+++.+ +++|++.++.+||
T Consensus 161 ~~r~~L~~RI~~Rvd~Ml~~GlleEv~~L~~~~~~~~~~~~~aIGYkE~~~~l~g~~~---------~~e~~e~i~~~Tr 231 (253)
T PF01715_consen 161 RDREELYERINKRVDEMLEQGLLEEVRALLERGLPPDLPAMQAIGYKEFIDYLEGEIS---------LEEAIERIKTNTR 231 (253)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHTTGGTTSCGGGSTTHHHHHHHHTTSSC---------HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhceeeehHHHHHhhcCCCC---------HHHHHHHHHHHHH
Confidence 9999999999999999999999999999999987788999999999999999999876 8999999999999
Q ss_pred HHHHHHHHHHhhhcccCCcceEEecC
Q 020775 238 KLAFRQLEKIRRLMNVKRWNIHRFDA 263 (321)
Q Consensus 238 qyAkRQ~tW~rr~~~~~~~~i~~lD~ 263 (321)
||||||+||||+.. .++|+|.
T Consensus 232 qyAKRQ~TWfr~~~-----~~~w~d~ 252 (253)
T PF01715_consen 232 QYAKRQRTWFRNQP-----NIHWIDI 252 (253)
T ss_dssp HHHHHHHHHHHTTS-----SEEEEET
T ss_pred HHHHHHHHHhCCCC-----CCeeeeC
Confidence 99999999999976 3899985
No 10
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=99.97 E-value=2.9e-30 Score=232.22 Aligned_cols=213 Identities=20% Similarity=0.271 Sum_probs=159.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCc-cccHhhHHHHHH
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNA-DFTAQNFCDMAS 111 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~-~~~~~~f~~~a~ 111 (321)
++++|+||||||||.+|+.||+++|++||+.|++|+|.+++++|+||+++|+.|+++++++.....+ .+++.++.+.+.
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i~a~ea~~~Li 81 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGIINAEEAHERLI 81 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S--HHHHHHHHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCCcCHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999998776666 799999999888
Q ss_pred HHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeC-CHHHHHHHHHHhHHHHHh-----ccHHHHHHH
Q 020775 112 FSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDV-SMPVLRSFVSERVDRMVQ-----NGMIDEVRK 185 (321)
Q Consensus 112 ~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~-~~~~L~~RL~~R~~~Ml~-----~Gll~Ev~~ 185 (321)
..+.++.+ ++.+|+.|||.+.++.+.... .+...|.+.+..+.. +++....|..+|+.+|+. .++++|+..
T Consensus 82 ~~v~~~~~-~~~~IlEGGSISLl~~m~~~~--~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~p~~~~~Sll~EL~~ 158 (233)
T PF01745_consen 82 SEVNSYSA-HGGLILEGGSISLLNCMAQDP--YWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLRPDSSGPSLLEELVA 158 (233)
T ss_dssp HHHHTTTT-SSEEEEEE--HHHHHHHHH-T--TTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS--SSS--HHHHHHH
T ss_pred HHHHhccc-cCceEEeCchHHHHHHHHhcc--cccCCCeEEEEEEECCChHHHHHHHHHHHHHhcCCCCCCCcHHHHHHH
Confidence 88888876 788999999999999988752 344677788888776 677888999999999996 369999999
Q ss_pred hhcCCCCCCCCccccc-cHHHHHHhHhcCC-CCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 020775 186 FFDPNADYSKGVRKAI-GVPEFDLYFKMEP-FLDE--ENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRL 250 (321)
Q Consensus 186 l~~~~~~~~~gi~qaI-GykE~~~yl~~~~-~~~~--~~~~~~l~~~ie~ik~~TrqyAkRQ~tW~rr~ 250 (321)
++.. +.++.+++.| ||+-++.|..... +.+. .......++.++.|......||..|.+-|-..
T Consensus 159 lW~~--p~~r~~ledIdGyr~~i~~a~~~~v~~~~l~~~~~~~~~~Li~~ia~eY~~ha~~QEq~F~~~ 225 (233)
T PF01745_consen 159 LWND--PALRPILEDIDGYRYIIRFARKHQVTPDQLLSIDLDMLQELIEGIAEEYLEHAQWQEQEFPQV 225 (233)
T ss_dssp HHTS--TTHHHHHTTSTTHHHHHHHHHHTT--GGGCCG-THHHHHHHHHHHHHHHHHHHHHHHHHS---
T ss_pred HHhC--ccccchHhhhccHHHHHHHHHHhCCCHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 9986 4556778888 9999999998542 1110 11225678999999999999999999988754
No 11
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.40 E-value=3.2e-13 Score=118.84 Aligned_cols=146 Identities=16% Similarity=0.281 Sum_probs=104.2
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHH
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMAS 111 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~ 111 (321)
.+-|+++|+.|+||||+++.||+.++..++.+|.. .+++.| .++.+..+.+....|++.-.
T Consensus 2 ~~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~--------------Ie~~~g-----~sI~eIF~~~GE~~FR~~E~ 62 (172)
T COG0703 2 NMNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQE--------------IEKRTG-----MSIAEIFEEEGEEGFRRLET 62 (172)
T ss_pred CccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHH--------------HHHHHC-----cCHHHHHHHHhHHHHHHHHH
Confidence 35689999999999999999999999999999986 444444 23333445677888999999
Q ss_pred HHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH-HHHHhccHH-HHHHHhhcC
Q 020775 112 FSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV-DRMVQNGMI-DEVRKFFDP 189 (321)
Q Consensus 112 ~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~-~~Ml~~Gll-~Ev~~l~~~ 189 (321)
+.++++...+...|-.||..+ +...+..+ ..-...++||+++.++|++|++..- .-.+..+-- +++++|++.
T Consensus 63 ~vl~~l~~~~~~ViaTGGG~v-----~~~enr~~-l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~~L~~~ 136 (172)
T COG0703 63 EVLKELLEEDNAVIATGGGAV-----LSEENRNL-LKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELEELLEE 136 (172)
T ss_pred HHHHHHhhcCCeEEECCCccc-----cCHHHHHH-HHhCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHHHHHHH
Confidence 999999888765666676532 22111011 1113479999999999999999444 444444444 679999987
Q ss_pred CCCCCCCccccccHHHHHHhHh
Q 020775 190 NADYSKGVRKAIGVPEFDLYFK 211 (321)
Q Consensus 190 ~~~~~~gi~qaIGykE~~~yl~ 211 (321)
+.+ =|+|...|.-
T Consensus 137 R~~---------~Y~e~a~~~~ 149 (172)
T COG0703 137 RQP---------LYREVADFII 149 (172)
T ss_pred HHH---------HHHHhCcEEe
Confidence 544 2888877764
No 12
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.37 E-value=4.2e-13 Score=119.81 Aligned_cols=124 Identities=17% Similarity=0.220 Sum_probs=85.7
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhH--
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNF-- 106 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f-- 106 (321)
++++.+|+|+||||||||||+..|++.++. +|..++++|++|+..|..|.+|++++...+...+..+.|
T Consensus 2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~~---------~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T PRK00300 2 MRRGLLIVLSGPSGAGKSTLVKALLERDPN---------LQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLE 72 (205)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCcc---------ceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEE
Confidence 457789999999999999999999998752 577888999999999999999988765433221111111
Q ss_pred --------HHHHHHHHHHHhhcCCcEEEE---cCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 107 --------CDMASFSIESTLNKGKVPIIV---GGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 107 --------~~~a~~~i~~i~~~g~~pIiv---GGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
.......++.....|+.+|+. +|...+.+.+. -...++.+.++.+++.+|+..|.
T Consensus 73 ~~~~~~~~y~~~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~----------~~~~I~i~~~s~~~l~~Rl~~R~ 138 (205)
T PRK00300 73 WAEVFGNYYGTPRSPVEEALAAGKDVLLEIDWQGARQVKKKMP----------DAVSIFILPPSLEELERRLRGRG 138 (205)
T ss_pred EEEECCccccCcHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCC----------CcEEEEEECcCHHHHHHHHHhcC
Confidence 111245577888889887764 33322222111 12334445678999999999996
No 13
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=99.36 E-value=1e-11 Score=118.32 Aligned_cols=131 Identities=15% Similarity=0.257 Sum_probs=97.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCE-EEecCcce------------------eecCccccCCCCCHHhhcCCCc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAE-IINSDKIQ------------------VYEGLDIVTNKITEEEQCGIPH 89 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~e-iIsaDs~Q------------------vYkgl~I~T~k~~~~E~~gvph 89 (321)
.++|.+|+|.|+|||||||+|..||.+++.. +|++|+++ .|..+++.|++|+.++ |
T Consensus 89 ~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~-----~ 163 (301)
T PRK04220 89 SKEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEP-----P 163 (301)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCch-----h
Confidence 3467799999999999999999999999986 89999999 9999999999999765 7
Q ss_pred ccccccCCCccccHhhHHHHHHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEe-CCHHHHHHHHH
Q 020775 90 HLLGIQHPNADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVD-VSMPVLRSFVS 168 (321)
Q Consensus 90 hll~~~~~~~~~~~~~f~~~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~-~~~~~L~~RL~ 168 (321)
++.++.++.+.+.++ +...|+....+|...| +-|.++.-..+-+ .....-+++.+++. .+.+...+|..
T Consensus 164 ~l~g~~~~~~~v~~g-----i~~~I~~~~~~g~s~I-iEGvhl~P~~i~~----~~~~~~~~i~~~l~i~~ee~h~~RF~ 233 (301)
T PRK04220 164 VIYGFERHVEPVSVG-----VEAVIERALKEGISVI-IEGVHIVPGFIKE----KYLENPNVFMFVLTLSDEEAHKARFY 233 (301)
T ss_pred hhhhHHHHHHHHHHH-----HHHHHHHHHHhCCcEE-EecCCCCHHHHHH----hhhcCCCEEEEEEEECCHHHHHHHHH
Confidence 888887765555444 5567788877876554 4455442222111 01122345566666 46789999999
Q ss_pred HhHHHH
Q 020775 169 ERVDRM 174 (321)
Q Consensus 169 ~R~~~M 174 (321)
.|...|
T Consensus 234 ~R~~~~ 239 (301)
T PRK04220 234 ARARVS 239 (301)
T ss_pred HHHhhh
Confidence 999888
No 14
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.34 E-value=3.1e-12 Score=110.21 Aligned_cols=134 Identities=21% Similarity=0.302 Sum_probs=86.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHH
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDM 109 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~ 109 (321)
++++.|+|+|++||||||+|..||++++..+++.|.+ .++..|.+.. +. .+......|.+.
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~--------------~~~~~g~~~~--~~---~~~~g~~~~~~~ 62 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHL--------------IEARAGKSIP--EI---FEEEGEAAFREL 62 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHH--------------HHHHcCCCHH--HH---HHHHCHHHHHHH
Confidence 5678999999999999999999999999999999975 1122222210 00 122344567777
Q ss_pred HHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhHHHH-Hh-ccHHHHHHHhh
Q 020775 110 ASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERVDRM-VQ-NGMIDEVRKFF 187 (321)
Q Consensus 110 a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~~~M-l~-~Gll~Ev~~l~ 187 (321)
..+.+.++.......|..||+..+-..... .++ -...++||+++.+.+.+|+.+|..+. +. ....+++..++
T Consensus 63 ~~~~~~~l~~~~~~vi~~g~~~~~~~~~r~----~l~--~~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~~~~~~~ 136 (175)
T PRK00131 63 EEEVLAELLARHNLVISTGGGAVLREENRA----LLR--ERGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKEKLRDLY 136 (175)
T ss_pred HHHHHHHHHhcCCCEEEeCCCEeecHHHHH----HHH--hCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHH
Confidence 777788877655566666775443222111 111 23578999999999999998876422 22 23445555555
Q ss_pred c
Q 020775 188 D 188 (321)
Q Consensus 188 ~ 188 (321)
.
T Consensus 137 ~ 137 (175)
T PRK00131 137 E 137 (175)
T ss_pred H
Confidence 4
No 15
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.34 E-value=5.1e-13 Score=118.56 Aligned_cols=122 Identities=20% Similarity=0.213 Sum_probs=89.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMA 110 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a 110 (321)
++.+++|+||+|+|||||...|-++.+ ++-.++.+|++|++.|.+|+.|||++...+.+..+.++|+++|
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~----------l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a 72 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK----------LRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWA 72 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC----------eEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEE
Confidence 678999999999999999999998863 3446788999999999999999999876655555555555554
Q ss_pred ----------HHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccC-CeEEEE-EeCCHHHHHHHHHHhH
Q 020775 111 ----------SFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKY-DCCFLW-VDVSMPVLRSFVSERV 171 (321)
Q Consensus 111 ----------~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~-~~~~i~-L~~~~~~L~~RL~~R~ 171 (321)
...++.+.+.|+..|+.=. ++|. .+++..+ +...|+ +.++.++|.+||..|.
T Consensus 73 ~~~gnyYGT~~~~ve~~~~~G~~vildId--------~qGa-~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rg 136 (191)
T COG0194 73 EYHGNYYGTSREPVEQALAEGKDVILDID--------VQGA-LQVKKKMPNAVSIFILPPSLEELERRLKGRG 136 (191)
T ss_pred EEcCCcccCcHHHHHHHHhcCCeEEEEEe--------hHHH-HHHHHhCCCeEEEEEcCCCHHHHHHHHHccC
Confidence 4567777788887776411 1121 1233333 455555 5668899999999996
No 16
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.32 E-value=8.1e-13 Score=115.51 Aligned_cols=121 Identities=17% Similarity=0.222 Sum_probs=83.2
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHH--
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDM-- 109 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~-- 109 (321)
+++|+|+||+|||||||+..|++.++...+ ...++|++|...+..|.+||+++...+...+..++|...
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~---------~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKF---------SISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAE 71 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccc---------cccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEE
Confidence 468999999999999999999998765433 236788999999999999988875443333333333322
Q ss_pred --------HHHHHHHHhhcCCcEEEEc---CchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 110 --------ASFSIESTLNKGKVPIIVG---GSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 110 --------a~~~i~~i~~~g~~pIivG---Gt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
....++.+...|+.+|+.. |...+.+++ .....++++.++.+.+.+|+.+|.
T Consensus 72 ~~~~~y~~~~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~----------~~~~~i~~~~~~~e~~~~Rl~~r~ 134 (180)
T TIGR03263 72 VHGNYYGTPKSPVEEALAAGKDVLLEIDVQGARQVKKKF----------PDAVSIFILPPSLEELERRLRKRG 134 (180)
T ss_pred ECCeeeCCcHHHHHHHHHCCCeEEEECCHHHHHHHHHhC----------CCcEEEEEECCCHHHHHHHHHHcC
Confidence 2456778888899888753 332222221 012345556788999999999885
No 17
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.32 E-value=6.9e-13 Score=118.34 Aligned_cols=123 Identities=16% Similarity=0.227 Sum_probs=87.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMA 110 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a 110 (321)
++++|+|+||+|||||||+..|.++++. ++.-++++|++|.+.|.+|+.||+++...+......+.|.+.+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~---------~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~ 73 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPD---------FLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWA 73 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCc---------cccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEE
Confidence 5789999999999999999999988643 2344689999999999999999998765544333333444333
Q ss_pred ----------HHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCC--eEEEEEeC-CHHHHHHHHHHhH
Q 020775 111 ----------SFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYD--CCFLWVDV-SMPVLRSFVSERV 171 (321)
Q Consensus 111 ----------~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~--~~~i~L~~-~~~~L~~RL~~R~ 171 (321)
.+.++...+.|+.+|+..-..- ++. ++..++ ..+|++.+ +.+++.+|+.+|.
T Consensus 74 ~~~g~~YGt~~~~i~~~~~~g~~~i~d~~~~g-~~~--------l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~ 138 (186)
T PRK14737 74 EVHDNYYGTPKAFIEDAFKEGRSAIMDIDVQG-AKI--------IKEKFPERIVTIFIEPPSEEEWEERLIHRG 138 (186)
T ss_pred EECCeeecCcHHHHHHHHHcCCeEEEEcCHHH-HHH--------HHHhCCCCeEEEEEECCCHHHHHHHHHhcC
Confidence 4668888899999988632100 011 222222 24566655 6899999999884
No 18
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.28 E-value=1.1e-11 Score=108.88 Aligned_cols=134 Identities=16% Similarity=0.222 Sum_probs=89.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMA 110 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a 110 (321)
++..|+|+||+||||||++..||+.++..+++.|.. .+++.|.+ .....+.+....|+...
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~--------------i~~~~g~~-----i~~~~~~~g~~~fr~~e 63 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQE--------------IEKRTGAD-----IGWVFDVEGEEGFRDRE 63 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCch--------------HHHHhCcC-----HhHHHHHhCHHHHHHHH
Confidence 456799999999999999999999999999999973 22333321 11222356777888887
Q ss_pred HHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhHHHH-Hh-ccHHHHHHHhhc
Q 020775 111 SFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERVDRM-VQ-NGMIDEVRKFFD 188 (321)
Q Consensus 111 ~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~~~M-l~-~Gll~Ev~~l~~ 188 (321)
.+.++++...+..+|.+||+... ......+ ......+|||+++.+++.+|+..+-.+. +. ....+.+..+++
T Consensus 64 ~~~l~~l~~~~~~vi~~ggg~v~-----~~~~~~~-l~~~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~~~l~~ 137 (172)
T PRK05057 64 EKVINELTEKQGIVLATGGGSVK-----SRETRNR-LSARGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVLEALAN 137 (172)
T ss_pred HHHHHHHHhCCCEEEEcCCchhC-----CHHHHHH-HHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHH
Confidence 88888887777767767776321 1000000 1112468999999999999998765443 32 223444556655
Q ss_pred C
Q 020775 189 P 189 (321)
Q Consensus 189 ~ 189 (321)
.
T Consensus 138 ~ 138 (172)
T PRK05057 138 E 138 (172)
T ss_pred H
Confidence 4
No 19
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.26 E-value=7.9e-12 Score=110.37 Aligned_cols=126 Identities=21% Similarity=0.334 Sum_probs=83.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHH-
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDM- 109 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~- 109 (321)
++++|+|+||+|||||+|+..|.+.++..+ ...+..+|++|.+.|.+|+.||+++...+......++|.+.
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~--------~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~ 72 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKF--------GRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYG 72 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTTE--------EEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhccccc--------ccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEe
Confidence 468999999999999999999999987432 34567899999999999999998865432211111222111
Q ss_pred ---------HHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEe-CCHHHHHHHHHHhHH
Q 020775 110 ---------ASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVD-VSMPVLRSFVSERVD 172 (321)
Q Consensus 110 ---------a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~-~~~~~L~~RL~~R~~ 172 (321)
....++.+...|+.+|+...... +..|-. ....+.+|++. ++.+.|.+|+.+|.+
T Consensus 73 ~~~g~~YGt~~~~i~~~~~~gk~~il~~~~~g-~~~L~~-------~~~~~~~IfI~~~s~~~l~~~l~~r~~ 137 (183)
T PF00625_consen 73 EYDGNYYGTSKSAIDKVLEEGKHCILDVDPEG-VKQLKK-------AGFNPIVIFIKPPSPEVLKRRLRRRGD 137 (183)
T ss_dssp EETTEEEEEEHHHHHHHHHTTTEEEEEETHHH-HHHHHH-------CTTTEEEEEEEESSHHHHHHHHHTTTH
T ss_pred eecchhhhhccchhhHhhhcCCcEEEEccHHH-HHHHHh-------cccCceEEEEEccchHHHHHHHhcccc
Confidence 13567788889999888754211 222222 24566777775 567999999988763
No 20
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=99.25 E-value=4e-12 Score=107.85 Aligned_cols=110 Identities=18% Similarity=0.239 Sum_probs=79.8
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHH-----
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCD----- 108 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~----- 108 (321)
+|+|+||||||||||+..|++.++..+ ..-++.+|++|+..|..|++||+++...+...+..+.|..
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~--------~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~ 72 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF--------GFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFH 72 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccc--------eecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEc
Confidence 478999999999999999999876432 1234558999999999999999998765544444444433
Q ss_pred -----HHHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCC
Q 020775 109 -----MASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVS 159 (321)
Q Consensus 109 -----~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~ 159 (321)
...+.++++.+.|+.||+.. +...++.+... ..+..+|++.++
T Consensus 73 ~~~yg~~~~~i~~~~~~g~~~il~~-~~~~~~~l~~~-------~~~~~~I~i~~~ 120 (137)
T cd00071 73 GNYYGTSKAAVEEALAEGKIVILEI-DVQGARQVKKS-------YPDAVSIFILPP 120 (137)
T ss_pred CEEecCcHHHHHHHHhCCCeEEEEe-cHHHHHHHHHc-------CCCeEEEEEECC
Confidence 44667888999999888764 43444444332 246778889988
No 21
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=1.5e-11 Score=105.48 Aligned_cols=129 Identities=20% Similarity=0.302 Sum_probs=96.0
Q ss_pred EcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHHHHHHHH
Q 020775 38 MGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMASFSIEST 117 (321)
Q Consensus 38 ~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~~~i~~i 117 (321)
+|.+||||||++..||+++++++|.+|++|--.+++-++ +|+|- .+-+...|++.....+...
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~--------~GiPL---------~DdDR~pWL~~l~~~~~~~ 63 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMS--------AGIPL---------NDDDRWPWLEALGDAAASL 63 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHh--------CCCCC---------CcchhhHHHHHHHHHHHHh
Confidence 599999999999999999999999999997555443322 55652 1223345777766666666
Q ss_pred hhcCCcEEEEcCchHHHHHHhccccccccccC-CeEEEEEeCCHHHHHHHHHHhHHHHHhccHHHHHHHhhcC
Q 020775 118 LNKGKVPIIVGGSNSYIEALVDDEDYGFRWKY-DCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDP 189 (321)
Q Consensus 118 ~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~-~~~~i~L~~~~~~L~~RL~~R~~~Ml~~Gll~Ev~~l~~~ 189 (321)
.+.|+. .|+.+| ||-..+...+|... ...|+||+.+.+.+.+|+.+|-.++|...|++..-+.++.
T Consensus 64 ~~~~~~-~vi~CS-----ALKr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~gHFM~~~ll~SQfa~LE~ 130 (161)
T COG3265 64 AQKNKH-VVIACS-----ALKRSYRDLLREANPGLRFVYLDGDFDLILERMKARKGHFMPASLLDSQFATLEE 130 (161)
T ss_pred hcCCCc-eEEecH-----HHHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhcccCCCCHHHHHHHHHHhcC
Confidence 667775 445566 44443322333322 4789999999999999999999999999999999888875
No 22
>PRK13946 shikimate kinase; Provisional
Probab=99.24 E-value=1.5e-11 Score=108.89 Aligned_cols=134 Identities=19% Similarity=0.301 Sum_probs=85.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMA 110 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a 110 (321)
.++.|+++|++||||||++..||+++|..++++|.+ .++..|.+- ....+.+....|++..
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~--------------~~~~~g~~~-----~e~~~~~ge~~~~~~e 69 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTE--------------IERAARMTI-----AEIFAAYGEPEFRDLE 69 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHH--------------HHHHhCCCH-----HHHHHHHCHHHHHHHH
Confidence 457899999999999999999999999999999974 112222110 0111245556677777
Q ss_pred HHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhHHHH-Hh-ccHHHHHHHhhc
Q 020775 111 SFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERVDRM-VQ-NGMIDEVRKFFD 188 (321)
Q Consensus 111 ~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~~~M-l~-~Gll~Ev~~l~~ 188 (321)
.+.+..+...+...|..||+.+....... .+ .-....|||++|.+++.+|+..|..+. +. ....+.++.+++
T Consensus 70 ~~~l~~l~~~~~~Vi~~ggg~~~~~~~r~----~l--~~~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i~~~~~ 143 (184)
T PRK13946 70 RRVIARLLKGGPLVLATGGGAFMNEETRA----AI--AEKGISVWLKADLDVLWERVSRRDTRPLLRTADPKETLARLME 143 (184)
T ss_pred HHHHHHHHhcCCeEEECCCCCcCCHHHHH----HH--HcCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHHHHHHH
Confidence 77888887666543334444322111110 01 113568999999999999999886543 22 233455666654
Q ss_pred C
Q 020775 189 P 189 (321)
Q Consensus 189 ~ 189 (321)
.
T Consensus 144 ~ 144 (184)
T PRK13946 144 E 144 (184)
T ss_pred H
Confidence 3
No 23
>PRK13948 shikimate kinase; Provisional
Probab=99.19 E-value=9.1e-11 Score=104.53 Aligned_cols=135 Identities=15% Similarity=0.160 Sum_probs=88.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHH
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCD 108 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~ 108 (321)
.+.+..|+++|++||||||+++.||++++..+|++|.. .++..|.+. .+....+....|++
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~--------------ie~~~g~si-----~~if~~~Ge~~fR~ 67 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRY--------------IERVTGKSI-----PEIFRHLGEAYFRR 67 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHH--------------HHHHHhCCH-----HHHHHHhCHHHHHH
Confidence 34568999999999999999999999999999999964 223333211 11113455677888
Q ss_pred HHHHHHHHHhhcCCcEEEEcCchHHHHHHhccccc-cccccCCeEEEEEeCCHHHHHHHHHHhHHHHHhc-cHHHHHHHh
Q 020775 109 MASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDY-GFRWKYDCCFLWVDVSMPVLRSFVSERVDRMVQN-GMIDEVRKF 186 (321)
Q Consensus 109 ~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~-~~r~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml~~-Gll~Ev~~l 186 (321)
...+.++++...+...|.+||..+ ++..+. .++. ...++||+++.+.+.+||..+...++.. ...+++.++
T Consensus 68 ~E~~~l~~l~~~~~~VIa~GgG~v-----~~~~n~~~l~~--~g~vV~L~~~~e~l~~Rl~~~~RPll~~~~~~~~l~~l 140 (182)
T PRK13948 68 CEAEVVRRLTRLDYAVISLGGGTF-----MHEENRRKLLS--RGPVVVLWASPETIYERTRPGDRPLLQVEDPLGRIRTL 140 (182)
T ss_pred HHHHHHHHHHhcCCeEEECCCcEE-----cCHHHHHHHHc--CCeEEEEECCHHHHHHHhcCCCCCCCCCCChHHHHHHH
Confidence 888888888766665555666422 111000 1111 2468899999999999996543233332 245677777
Q ss_pred hcC
Q 020775 187 FDP 189 (321)
Q Consensus 187 ~~~ 189 (321)
++.
T Consensus 141 ~~~ 143 (182)
T PRK13948 141 LNE 143 (182)
T ss_pred HHH
Confidence 764
No 24
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.14 E-value=7.9e-11 Score=104.26 Aligned_cols=124 Identities=16% Similarity=0.218 Sum_probs=86.4
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccH--------
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTA-------- 103 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~-------- 103 (321)
+++|+|+||+||||+||+..|.+.++.. +...+..+|+.+.+.|..|+.||+++...+......
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~--------~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~ 73 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDA--------FERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGE 73 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcc--------eEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEE
Confidence 4689999999999999999999987421 455677899999999999999998764332221111
Q ss_pred --hhHHHHHHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEe-CCHHHHHHHHHHhH
Q 020775 104 --QNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVD-VSMPVLRSFVSERV 171 (321)
Q Consensus 104 --~~f~~~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~-~~~~~L~~RL~~R~ 171 (321)
+.|.-...+.++++.+.|+.+|+.+.- -.+..+-. ...+..+|++. ++.++|.+||.+|.
T Consensus 74 ~~g~~YGt~~~~i~~~~~~~~~~ild~~~-~~~~~l~~-------~~~~~~vIfi~~~s~~~l~~rl~~R~ 136 (184)
T smart00072 74 YSGNYYGTSKETIRQVAEQGKHCLLDIDP-QGVKQLRK-------AQLYPIVIFIAPPSSEELERRLRGRG 136 (184)
T ss_pred EcCcCcccCHHHHHHHHHcCCeEEEEECH-HHHHHHHH-------hCCCcEEEEEeCcCHHHHHHHHHhcC
Confidence 223333345677777889888887652 22223222 12345677776 67888999999885
No 25
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.13 E-value=4.3e-10 Score=97.34 Aligned_cols=144 Identities=13% Similarity=0.248 Sum_probs=95.1
Q ss_pred ccCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHH
Q 020775 28 RRQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFC 107 (321)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~ 107 (321)
+.+-+-+|+|+|++||||||++..|++.|+.++|.+|.++--...+-+ .+|+|-. .++.| .|.
T Consensus 8 ~~~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM--------~~GipLn------D~DR~---pWL 70 (191)
T KOG3354|consen 8 MGPFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKM--------TQGIPLN------DDDRW---PWL 70 (191)
T ss_pred cCCCceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHH--------hcCCCCC------ccccc---HHH
Confidence 344456999999999999999999999999999999998633322111 2666632 22333 244
Q ss_pred HHHHHHHHHHhhcCCcEEEEcCchH--HHHHHhccccccc----cccCCeEEEEEeCCHHHHHHHHHHhHHHHHhccHHH
Q 020775 108 DMASFSIESTLNKGKVPIIVGGSNS--YIEALVDDEDYGF----RWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMID 181 (321)
Q Consensus 108 ~~a~~~i~~i~~~g~~pIivGGt~~--Y~~all~g~~~~~----r~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml~~Gll~ 181 (321)
+.....+..-...|+..|+ .+|.+ -++.++.+..... .......|++|.++.+++.+|+.+|-.+++..-|++
T Consensus 71 ~~i~~~~~~~l~~~q~vVl-ACSaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~gHFMp~~lle 149 (191)
T KOG3354|consen 71 KKIAVELRKALASGQGVVL-ACSALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKRLKKRKGHFMPADLLE 149 (191)
T ss_pred HHHHHHHHHHhhcCCeEEE-EhHHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHHHhhcccccCCHHHHH
Confidence 4333333332335554444 45533 1223333211111 112346899999999999999999999999999999
Q ss_pred HHHHhhcC
Q 020775 182 EVRKFFDP 189 (321)
Q Consensus 182 Ev~~l~~~ 189 (321)
..-+.++.
T Consensus 150 SQf~~LE~ 157 (191)
T KOG3354|consen 150 SQFATLEA 157 (191)
T ss_pred HHHHhccC
Confidence 99888875
No 26
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.11 E-value=1.1e-09 Score=94.36 Aligned_cols=115 Identities=23% Similarity=0.305 Sum_probs=70.1
Q ss_pred EEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHHHHH
Q 020775 35 LILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMASFSI 114 (321)
Q Consensus 35 IvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~~~i 114 (321)
|+|+||+||||||+|..|++.++..+++.|++..+..+.. ...|.++ ...+...|.....+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~--------~~~~~~~---------~~~~~~~~~~~~~~~~ 63 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEK--------MSAGIPL---------NDDDRWPWLQNLNDAS 63 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHH--------HHcCCCC---------ChhhHHHHHHHHHHHH
Confidence 5789999999999999999999999999999743321111 1112211 0112223444444444
Q ss_pred HHHhhcCCcEEEEcCchHHHHHHhcccccccc-ccCCeEEEEEeCCHHHHHHHHHHhHH
Q 020775 115 ESTLNKGKVPIIVGGSNSYIEALVDDEDYGFR-WKYDCCFLWVDVSMPVLRSFVSERVD 172 (321)
Q Consensus 115 ~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r-~~~~~~~i~L~~~~~~L~~RL~~R~~ 172 (321)
......|+..|+..|. + -..... .++ ...++.++||+++.+++.+|+..|.+
T Consensus 64 ~~~l~~~~~~Vi~~t~-~-~~~~r~----~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 116 (163)
T TIGR01313 64 TAAAAKNKVGIITCSA-L-KRHYRD----ILREAEPNLHFIYLSGDKDVILERMKARKG 116 (163)
T ss_pred HHHHhcCCCEEEEecc-c-HHHHHH----HHHhcCCCEEEEEEeCCHHHHHHHHHhccC
Confidence 4455566655554432 1 111110 111 23456789999999999999999963
No 27
>PRK13947 shikimate kinase; Provisional
Probab=99.10 E-value=2.3e-10 Score=99.16 Aligned_cols=130 Identities=18% Similarity=0.285 Sum_probs=80.9
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHHHH
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMASFS 113 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~~~ 113 (321)
.|+|+|++||||||+|..||++++..+++.|.. .++..|.+..- . .+.+....|+......
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~--------------~~~~~g~~~~~--~---~~~~ge~~~~~~e~~~ 63 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKE--------------IEKMTGMTVAE--I---FEKDGEVRFRSEEKLL 63 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchh--------------hhhhcCCcHHH--H---HHHhChHHHHHHHHHH
Confidence 589999999999999999999999999999985 11222222100 0 0123344566666667
Q ss_pred HHHHhhcCCcEEEEcCchHHHHHHhcccc-ccccccCCeEEEEEeCCHHHHHHHHHHhHHHHH--hccHHHHHHHhhcC
Q 020775 114 IESTLNKGKVPIIVGGSNSYIEALVDDED-YGFRWKYDCCFLWVDVSMPVLRSFVSERVDRMV--QNGMIDEVRKFFDP 189 (321)
Q Consensus 114 i~~i~~~g~~pIivGGt~~Y~~all~g~~-~~~r~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml--~~Gll~Ev~~l~~~ 189 (321)
++.+...+...|-.||. . +++... ..++ . ...+|||+++.+.+.+|+..|-.+++ ...+.+++.++++.
T Consensus 64 ~~~l~~~~~~vi~~g~g-~----vl~~~~~~~l~-~-~~~vv~L~~~~~~l~~Rl~~r~~rp~~~~~~~~~~i~~~~~~ 135 (171)
T PRK13947 64 VKKLARLKNLVIATGGG-V----VLNPENVVQLR-K-NGVVICLKARPEVILRRVGKKKSRPLLMVGDPEERIKELLKE 135 (171)
T ss_pred HHHHhhcCCeEEECCCC-C----cCCHHHHHHHH-h-CCEEEEEECCHHHHHHHhcCCCCCCCCCCCChHHHHHHHHHH
Confidence 77776555444444543 1 111100 0111 1 13589999999999999988755433 34466777666543
No 28
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.09 E-value=6.1e-10 Score=98.67 Aligned_cols=121 Identities=21% Similarity=0.256 Sum_probs=71.5
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHH-
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMA- 110 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a- 110 (321)
+.+++|+||+|||||||++.|+..++.+++-.|+. +|..+... +..++.+...++......+.|....
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~--------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRY--------ITRPASAG---SENHIALSEQEFFTRAGQNLFALSWH 70 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEE--------CCCccchh---HHhheeEcHHHHHHHHHCCchhhHHH
Confidence 46899999999999999999999988777666653 22222221 1122222211111111111121111
Q ss_pred --------HHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHh
Q 020775 111 --------SFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSER 170 (321)
Q Consensus 111 --------~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R 170 (321)
...+++..+.|+. ||++|+..+.+.+... + .....+|||++|.+++.+||..|
T Consensus 71 ~~g~~yg~~~~~~~~l~~g~~-VI~~G~~~~~~~~~~~----~--~~~~~vi~l~~s~e~l~~RL~~R 131 (186)
T PRK10078 71 ANGLYYGVGIEIDLWLHAGFD-VLVNGSRAHLPQARAR----Y--QSALLPVCLQVSPEILRQRLENR 131 (186)
T ss_pred HhCCccCCcHHHHHHHhCCCE-EEEeChHHHHHHHHHH----c--CCCEEEEEEeCCHHHHHHHHHHh
Confidence 0124555667764 5667776665554432 1 22467889999999999999887
No 29
>PRK00625 shikimate kinase; Provisional
Probab=99.08 E-value=3.1e-10 Score=100.28 Aligned_cols=115 Identities=12% Similarity=0.185 Sum_probs=75.1
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHHHH
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMASFS 113 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~~~ 113 (321)
.|+|+|++||||||++..||++++..+|+.|.+ .++..|..-+ ....+..+.+....|++.....
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~--------------I~~~~g~~~~-~~i~eif~~~Ge~~fr~~E~~~ 66 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDL--------------IVSNYHGALY-SSPKEIYQAYGEEGFCREEFLA 66 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHH--------------HHHHhCCCCC-CCHHHHHHHHCHHHHHHHHHHH
Confidence 589999999999999999999999999999986 2222221000 0011112345566788888778
Q ss_pred HHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHh
Q 020775 114 IESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSER 170 (321)
Q Consensus 114 i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R 170 (321)
++++.. +...|.+||....-...+. .+ +....++||+++.+++.+||..|
T Consensus 67 l~~l~~-~~~VIs~GGg~~~~~e~~~----~l--~~~~~Vv~L~~~~e~l~~Rl~~R 116 (173)
T PRK00625 67 LTSLPV-IPSIVALGGGTLMIEPSYA----HI--RNRGLLVLLSLPIATIYQRLQKR 116 (173)
T ss_pred HHHhcc-CCeEEECCCCccCCHHHHH----HH--hcCCEEEEEECCHHHHHHHHhcC
Confidence 877753 4445556654321111111 11 22357899999999999999987
No 30
>PLN02199 shikimate kinase
Probab=99.06 E-value=3.3e-10 Score=107.68 Aligned_cols=133 Identities=15% Similarity=0.326 Sum_probs=88.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhh-cCCCcccccccCCCccccHhhHHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQ-CGIPHHLLGIQHPNADFTAQNFCDM 109 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~-~gvphhll~~~~~~~~~~~~~f~~~ 109 (321)
+++.|+|+|.+||||||++..||+.++..+|++|.+ .++. .|. ++.+..+.+....|++.
T Consensus 101 ~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~l--------------Ie~~~~G~-----sI~eIf~~~GE~~FR~~ 161 (303)
T PLN02199 101 NGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTL--------------IEQAMNGT-----SVAEIFVHHGENFFRGK 161 (303)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHH--------------HHHHhcCC-----CHHHHHHHhCHHHHHHH
Confidence 467899999999999999999999999999999985 2221 221 11122345677789999
Q ss_pred HHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHH--hHHH-HHhc--c-----H
Q 020775 110 ASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSE--RVDR-MVQN--G-----M 179 (321)
Q Consensus 110 a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~--R~~~-Ml~~--G-----l 179 (321)
..+++.++.......|-+||... +...+..+ .. ...+|||+++.+.+.+||.. .-.+ ++.. + .
T Consensus 162 E~e~L~~L~~~~~~VIStGGG~V-----~~~~n~~~-L~-~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~~~~~d~~~~~ 234 (303)
T PLN02199 162 ETDALKKLSSRYQVVVSTGGGAV-----IRPINWKY-MH-KGISIWLDVPLEALAHRIAAVGTDSRPLLHDESGDAYSVA 234 (303)
T ss_pred HHHHHHHHHhcCCEEEECCCccc-----CCHHHHHH-Hh-CCeEEEEECCHHHHHHHHhhcCCCCCCcCCCCCcchhhhH
Confidence 88999998766555555677522 22111011 11 34689999999999999985 1122 2321 2 2
Q ss_pred HHHHHHhhcC
Q 020775 180 IDEVRKFFDP 189 (321)
Q Consensus 180 l~Ev~~l~~~ 189 (321)
.+++.+|++.
T Consensus 235 ~~~L~~L~~~ 244 (303)
T PLN02199 235 FKRLSAIWDE 244 (303)
T ss_pred HHHHHHHHHH
Confidence 4677777765
No 31
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.04 E-value=7.7e-10 Score=92.58 Aligned_cols=119 Identities=23% Similarity=0.345 Sum_probs=70.6
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccc-cHhhHHHHHHH
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADF-TAQNFCDMASF 112 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~-~~~~f~~~a~~ 112 (321)
+|+++||+||||||++..|++.++..+|+.|.+. .. ..+- +..++.... -...+.+....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~--~~------------~~~~-----~~~~~~~~~~~~~~~~~~~~~ 61 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIR--RR------------LAGE-----DPPSPSDYIEAEERAYQILNA 61 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHH--HH------------HCCS-----SSGCCCCCHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHH--HH------------Hccc-----ccccchhHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999999852 11 1110 000000000 11123333334
Q ss_pred HHHHHhhcCCcEEEEcCchHHHHHHhccccccc-cccCCeEEEEEeCCHHHHHHHHHHhHHH
Q 020775 113 SIESTLNKGKVPIIVGGSNSYIEALVDDEDYGF-RWKYDCCFLWVDVSMPVLRSFVSERVDR 173 (321)
Q Consensus 113 ~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~-r~~~~~~~i~L~~~~~~L~~RL~~R~~~ 173 (321)
.++...+.|.. +|+-+|+++-...- ...... ...++..+++++++.+++.+|+..|...
T Consensus 62 ~~~~~l~~g~~-~vvd~~~~~~~~r~-~~~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~ 121 (143)
T PF13671_consen 62 AIRKALRNGNS-VVVDNTNLSREERA-RLRELARKHGYPVRVVYLDAPEETLRERLAQRNRE 121 (143)
T ss_dssp HHHHHHHTT-E-EEEESS--SHHHHH-HHHHHHHHCTEEEEEEEECHHHHHHHHHHHTTHCC
T ss_pred HHHHHHHcCCC-ceeccCcCCHHHHH-HHHHHHHHcCCeEEEEEEECCHHHHHHHHHhcCCc
Confidence 55556666654 55555554322110 000011 1245678999999999999999999743
No 32
>PRK13949 shikimate kinase; Provisional
Probab=99.04 E-value=4.4e-10 Score=98.68 Aligned_cols=111 Identities=18% Similarity=0.198 Sum_probs=71.9
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHHHH
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMASFS 113 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~~~ 113 (321)
-|+|+||+||||||+++.||+.++..+|+.|.+ + ++..+. +..+..+.+....|++...++
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~-i-------------~~~~~~-----~~~~~~~~~g~~~fr~~e~~~ 63 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFF-I-------------ENRFHK-----TVGDIFAERGEAVFRELERNM 63 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccHH-H-------------HHHHCc-----cHHHHHHHhCHHHHHHHHHHH
Confidence 589999999999999999999999999999975 1 111111 011111244566788887788
Q ss_pred HHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHH
Q 020775 114 IESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSE 169 (321)
Q Consensus 114 i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~ 169 (321)
++++.......|.+||... ..-..... .+-...+|||+++.+.+.+||..
T Consensus 64 l~~l~~~~~~vis~Ggg~~-----~~~~~~~~-l~~~~~vi~L~~~~~~~~~Ri~~ 113 (169)
T PRK13949 64 LHEVAEFEDVVISTGGGAP-----CFFDNMEL-MNASGTTVYLKVSPEVLFVRLRL 113 (169)
T ss_pred HHHHHhCCCEEEEcCCccc-----CCHHHHHH-HHhCCeEEEEECCHHHHHHHHhc
Confidence 8887555554444666421 00000001 11123678999999999999974
No 33
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.03 E-value=5.1e-10 Score=94.86 Aligned_cols=112 Identities=17% Similarity=0.289 Sum_probs=72.2
Q ss_pred EEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHHHHH
Q 020775 35 LILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMASFSI 114 (321)
Q Consensus 35 IvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~~~i 114 (321)
|+|+|++||||||+|..||+.++..++++|.+ +. +..|. +.....+.+....|+....+.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~-~~-------------~~~~~-----~~~~~~~~~~~~~~~~~e~~~~ 62 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDEL-IE-------------QRAGM-----SIPEIFAEEGEEGFRELEREVL 62 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHH-HH-------------HHcCC-----CHHHHHHHHCHHHHHHHHHHHH
Confidence 78999999999999999999999999999975 11 11111 0001112334556777666677
Q ss_pred HHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 115 ESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 115 ~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
..+...+.. |+++|++..+..-. .+. ...+..++||++|.+++.+|+.+|-
T Consensus 63 ~~~~~~~~~-vi~~g~~~i~~~~~----~~~-~~~~~~~i~l~~~~e~~~~R~~~r~ 113 (154)
T cd00464 63 LLLLTKENA-VIATGGGAVLREEN----RRL-LLENGIVVWLDASPEELLERLARDK 113 (154)
T ss_pred HHHhccCCc-EEECCCCccCcHHH----HHH-HHcCCeEEEEeCCHHHHHHHhccCC
Confidence 777766654 44444433222110 000 1224579999999999999998874
No 34
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.03 E-value=3.4e-10 Score=102.28 Aligned_cols=126 Identities=15% Similarity=0.158 Sum_probs=81.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHH
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCD 108 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~ 108 (321)
..++++|+|+||+|||||||+..|++... .++.-...+|..+.+.|..|..||+++...+......+.|.+
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~~~---------~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le 80 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRERKL---------PFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLE 80 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhcCC---------cccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEE
Confidence 34678999999999999999999986521 133455678999999999999999886543222111112221
Q ss_pred H----------HHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEE-eCCHHHHHHHHHHhH
Q 020775 109 M----------ASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWV-DVSMPVLRSFVSERV 171 (321)
Q Consensus 109 ~----------a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L-~~~~~~L~~RL~~R~ 171 (321)
. ....++...+.|+.+|+. .+.-++..+-.. ..+..++++ +++.++|.+|+..|.
T Consensus 81 ~~~~~g~~YGt~~~~i~~~~~~g~~vi~~-~~~~g~~~l~~~-------~pd~~~if~~pps~e~l~~Rl~~R~ 146 (206)
T PRK14738 81 WAEVYGNYYGVPKAPVRQALASGRDVIVK-VDVQGAASIKRL-------VPEAVFIFLAPPSMDELTRRLELRR 146 (206)
T ss_pred EEEEcCceecCCHHHHHHHHHcCCcEEEE-cCHHHHHHHHHh-------CCCeEEEEEeCCCHHHHHHHHHHcC
Confidence 1 124577777888877664 343344333221 123344444 567889999999985
No 35
>PRK06217 hypothetical protein; Validated
Probab=99.02 E-value=3.8e-09 Score=93.31 Aligned_cols=104 Identities=13% Similarity=0.184 Sum_probs=65.6
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHHH
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMASF 112 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~~ 112 (321)
..|+|+|++||||||+|..|++.++.++|+.|.+ +.. + .+.+ + ........+.+.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~--~~~-------~-----~~~~--~------~~~~~~~~~~~~--- 56 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDY--FWL-------P-----TDPP--F------TTKRPPEERLRL--- 56 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCce--eec-------c-----CCCC--c------cccCCHHHHHHH---
Confidence 3599999999999999999999999999999986 221 0 0100 0 001111222222
Q ss_pred HHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 113 SIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 113 ~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
.++.+. .+..-||.|+-..|.+.+.. .. ..+|||++|.+++.+|+.+|.
T Consensus 57 ~~~~~~-~~~~~vi~G~~~~~~~~~~~--------~~-d~~i~Ld~~~~~~~~Rl~~R~ 105 (183)
T PRK06217 57 LLEDLR-PREGWVLSGSALGWGDPLEP--------LF-DLVVFLTIPPELRLERLRLRE 105 (183)
T ss_pred HHHHHh-cCCCEEEEccHHHHHHHHHh--------hC-CEEEEEECCHHHHHHHHHcCc
Confidence 223332 34456777665444333221 22 357889999999999999984
No 36
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.01 E-value=5.7e-10 Score=96.93 Aligned_cols=131 Identities=16% Similarity=0.258 Sum_probs=80.2
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHHH
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMASF 112 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~~ 112 (321)
+.|+|+|++||||||+|..||++++..+++.|.+. ++ ..|.+. .+..+.+....|++...+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~-~~-------------~~g~~~-----~~~~~~~g~~~~~~~e~~ 63 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWL-QS-------------TSNMTV-----AEIVEREGWAGFRARESA 63 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHH-HH-------------HhCCCH-----HHHHHHHCHHHHHHHHHH
Confidence 46888999999999999999999999999999862 11 111110 000123445667777777
Q ss_pred HHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhHHH---H-H-hccHHHHHHHhh
Q 020775 113 SIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERVDR---M-V-QNGMIDEVRKFF 187 (321)
Q Consensus 113 ~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~~~---M-l-~~Gll~Ev~~l~ 187 (321)
.++.+ ..+...|..||... +......+ .+-...+|||+++.+++.+|+..|-.. + + ...+.+++.+++
T Consensus 64 ~~~~~-~~~~~vi~~ggg~v-----l~~~~~~~-l~~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~~~~~ 136 (171)
T PRK03731 64 ALEAV-TAPSTVIATGGGII-----LTEENRHF-MRNNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEVAEVL 136 (171)
T ss_pred HHHHh-cCCCeEEECCCCcc-----CCHHHHHH-HHhCCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHHHHHH
Confidence 77654 44554444555422 11110011 011346899999999999999887321 1 1 223456666666
Q ss_pred cC
Q 020775 188 DP 189 (321)
Q Consensus 188 ~~ 189 (321)
+.
T Consensus 137 ~~ 138 (171)
T PRK03731 137 AE 138 (171)
T ss_pred HH
Confidence 54
No 37
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.00 E-value=1.3e-09 Score=111.88 Aligned_cols=136 Identities=15% Similarity=0.223 Sum_probs=92.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMA 110 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a 110 (321)
+.+.|+++|.+||||||+++.||++++..+|+.|.. .+++.|.+ +.+..+.+....|++..
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~--------------ie~~~g~s-----i~eif~~~Ge~~FR~~E 65 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVE--------------IEREIGMS-----IPSYFEEYGEPAFREVE 65 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHH--------------HHHHHCcC-----HHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999985 33444321 12223456778899988
Q ss_pred HHHHHHHhhcCCcEEEEcCchHHHHHHhcccccc-cc--ccCCeEEEEEeCCHHHHHHHHHHhHHHHHhcc-HHHHHHHh
Q 020775 111 SFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYG-FR--WKYDCCFLWVDVSMPVLRSFVSERVDRMVQNG-MIDEVRKF 186 (321)
Q Consensus 111 ~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~-~r--~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml~~G-ll~Ev~~l 186 (321)
.+.++++.......|-+||... ....+.. +. .+-...+|||+++.+.+.+|+..+-.+.+-.+ -.++++++
T Consensus 66 ~~~l~~~~~~~~~VIs~GGG~v-----~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~~RPll~~~~~~~~~~l 140 (542)
T PRK14021 66 ADVVADMLEDFDGIFSLGGGAP-----MTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGGGRPMLNGDANKRWKKL 140 (542)
T ss_pred HHHHHHHHhcCCeEEECCCchh-----CCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCCCCCCCCCCcHHHHHHH
Confidence 8889887655444444677522 2111101 00 11234789999999999999976654444333 35788888
Q ss_pred hcCC
Q 020775 187 FDPN 190 (321)
Q Consensus 187 ~~~~ 190 (321)
|+.+
T Consensus 141 ~~~R 144 (542)
T PRK14021 141 FKQR 144 (542)
T ss_pred HHHH
Confidence 8763
No 38
>PLN02772 guanylate kinase
Probab=98.99 E-value=9.5e-10 Score=108.18 Aligned_cols=122 Identities=21% Similarity=0.254 Sum_probs=86.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMA 110 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a 110 (321)
..++++|+||+|+|||||...|.+.++.. +...++.+|++|++.|..|+.|||.+...+......+.|.+.+
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p~~--------~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~ 205 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFPSM--------FGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFA 205 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhcccc--------ccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceee
Confidence 45799999999999999999999876432 2335678999999999999999998754444444444555444
Q ss_pred ----------HHHHHHHhhcCCcEEEE---cCchHHHHHHhccccccccccCC-eEEEEEeCCHHHHHHHHHHhH
Q 020775 111 ----------SFSIESTLNKGKVPIIV---GGSNSYIEALVDDEDYGFRWKYD-CCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 111 ----------~~~i~~i~~~g~~pIiv---GGt~~Y~~all~g~~~~~r~~~~-~~~i~L~~~~~~L~~RL~~R~ 171 (321)
.+.++.+.+.|+.+|+. -|... +.. ..+. ..+|.+.++.++|.+||..|.
T Consensus 206 e~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~qGar~----Lr~-------~~l~~v~IFI~PPSlEeLe~RL~~RG 269 (398)
T PLN02772 206 SVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGARS----VRA-------SSLEAIFIFICPPSMEELEKRLRARG 269 (398)
T ss_pred eecCccccccHHHHHHHHHhCCcEEEeCCHHHHHH----HHH-------hcCCeEEEEEeCCCHHHHHHHHHhcC
Confidence 46788888999988864 22211 111 0122 345556778999999999884
No 39
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.97 E-value=7.6e-09 Score=87.85 Aligned_cols=116 Identities=20% Similarity=0.301 Sum_probs=68.1
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHHHH
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMASFS 113 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~~~ 113 (321)
+|+|+|++||||||+|..|++.++..+++.|.+ ++... ......|.+. .+. ....|.......
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~--~~~~~------~~~~~~~~~~--------~~~-~~~~~~~~~~~~ 63 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDL--HPPAN------IAKMAAGIPL--------NDE-DRWPWLQALTDA 63 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCccc--ccHHH------HHHHHcCCCC--------Ccc-chhhHHHHHHHH
Confidence 588999999999999999999999999999985 33211 0001111111 000 012333333322
Q ss_pred -HHHHhhcCCcEEEEcCchHHHHHHhcccccccc---ccCCeEEEEEeCCHHHHHHHHHHhHH
Q 020775 114 -IESTLNKGKVPIIVGGSNSYIEALVDDEDYGFR---WKYDCCFLWVDVSMPVLRSFVSERVD 172 (321)
Q Consensus 114 -i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r---~~~~~~~i~L~~~~~~L~~RL~~R~~ 172 (321)
++.+...+...|+..+. + .+..-+ .++ ...+..++++.++.+++.+|+.+|-.
T Consensus 64 ~~~~l~~~~~~vVid~~~-~-~~~~r~----~~~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~ 120 (150)
T cd02021 64 LLAKLASAGEGVVVACSA-L-KRIYRD----ILRGGAANPRVRFVHLDGPREVLAERLAARKG 120 (150)
T ss_pred HHHHHHhCCCCEEEEecc-c-cHHHHH----HHHhcCCCCCEEEEEEECCHHHHHHHHHhccc
Confidence 22333456555555432 1 111111 111 23567899999999999999999953
No 40
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.96 E-value=5.5e-09 Score=91.10 Aligned_cols=128 Identities=20% Similarity=0.275 Sum_probs=75.1
Q ss_pred EcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHHHHHHHH
Q 020775 38 MGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMASFSIEST 117 (321)
Q Consensus 38 ~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~~~i~~i 117 (321)
+||+||||||++..|++.++..++++|.++....+ .| ...|.++. +-+...|...........
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~----~~----~~~g~~~~---------~~~~~~~~~~~~~~~~~~ 63 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNI----EK----MASGEPLN---------DDDRKPWLQALNDAAFAM 63 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhh----cc----ccCCCCCC---------hhhHHHHHHHHHHHHHHH
Confidence 59999999999999999999999999986421110 00 11222221 113334444444433333
Q ss_pred hhcCCcEEEEcCchHHHHHHhcccccccc-ccCCeEEEEEeCCHHHHHHHHHHhHHHHHhccHHHHHHHhhc
Q 020775 118 LNKGKVPIIVGGSNSYIEALVDDEDYGFR-WKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFD 188 (321)
Q Consensus 118 ~~~g~~pIivGGt~~Y~~all~g~~~~~r-~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml~~Gll~Ev~~l~~ 188 (321)
...+...+++ +|.+ .+..-. .++ ...++.++||+++.++|.+|+.+|.++.....+++....-++
T Consensus 64 ~~~~~~~viv-~s~~-~~~~r~----~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~a~~~vl~~Q~~~~e 129 (163)
T PRK11545 64 QRTNKVSLIV-CSAL-KKHYRD----LLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQ 129 (163)
T ss_pred HHcCCceEEE-Eecc-hHHHHH----HHHccCCCEEEEEEECCHHHHHHHHHhccCCCCCHHHHHHHHHHcC
Confidence 3345566666 3432 111110 111 235689999999999999999999754333445555444343
No 41
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.94 E-value=4.4e-09 Score=91.70 Aligned_cols=101 Identities=15% Similarity=0.373 Sum_probs=67.6
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHHH-
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMASF- 112 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~~- 112 (321)
+|.|.||+||||||+|..||+++|.++||+-. +||++ ..|+ .++..+|.+.|+.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~--iFR~~--------A~e~---------------gmsl~ef~~~AE~~ 56 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVSAGT--IFREM--------ARER---------------GMSLEEFSRYAEED 56 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceeeccH--HHHHH--------HHHc---------------CCCHHHHHHHHhcC
Confidence 68999999999999999999999999999876 46655 1222 2344455555431
Q ss_pred ---------HHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 113 ---------SIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 113 ---------~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
...++..++. .|+.|- +.| ++-..+..+.|||.+|.++-.+|+..|=
T Consensus 57 p~iD~~iD~rq~e~a~~~n-vVlegr--------LA~---Wi~k~~adlkI~L~Apl~vRa~Ria~RE 112 (179)
T COG1102 57 PEIDKEIDRRQKELAKEGN-VVLEGR--------LAG---WIVREYADLKIWLKAPLEVRAERIAKRE 112 (179)
T ss_pred chhhHHHHHHHHHHHHcCC-eEEhhh--------hHH---HHhccccceEEEEeCcHHHHHHHHHHhc
Confidence 2223333333 443331 222 2222355678999999999999999994
No 42
>PRK06762 hypothetical protein; Provisional
Probab=98.93 E-value=7.3e-09 Score=89.55 Aligned_cols=124 Identities=16% Similarity=0.324 Sum_probs=73.2
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC--CCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF--PAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCD 108 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l--~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~ 108 (321)
++.+|+|+|++||||||+|..|++++ +..+++.|.+ ++.+. .+...+ ..+....+.
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~--r~~l~------------------~~~~~~-~~~~~~~~~- 58 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVV--RRDML------------------RVKDGP-GNLSIDLIE- 58 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHH--HHHhc------------------cccCCC-CCcCHHHHH-
Confidence 36799999999999999999999998 4667888875 22110 000011 112221122
Q ss_pred HHHHHHHHHhhcCCcEEEEcCch---HH---HHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhHHHHHhccH-HH
Q 020775 109 MASFSIESTLNKGKVPIIVGGSN---SY---IEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGM-ID 181 (321)
Q Consensus 109 ~a~~~i~~i~~~g~~pIivGGt~---~Y---~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml~~Gl-l~ 181 (321)
..++...+.|...|+ .++. .| ++.+... ...++.++||++|.+++.+|+.+|.. ..++ .+
T Consensus 59 ---~~~~~~~~~g~~vil-d~~~~~~~~~~~~~~l~~~------~~~~~~~v~Ldap~e~~~~R~~~R~~---~~~~~~~ 125 (166)
T PRK06762 59 ---QLVRYGLGHCEFVIL-EGILNSDRYGPMLKELIHL------FRGNAYTYYFDLSFEETLRRHSTRPK---SHEFGED 125 (166)
T ss_pred ---HHHHHHHhCCCEEEE-chhhccHhHHHHHHHHHHh------cCCCeEEEEEeCCHHHHHHHHhcccc---cccCCHH
Confidence 223334556665554 4431 11 1122111 12357899999999999999999963 2223 56
Q ss_pred HHHHhhcC
Q 020775 182 EVRKFFDP 189 (321)
Q Consensus 182 Ev~~l~~~ 189 (321)
++..+++.
T Consensus 126 ~l~~~~~~ 133 (166)
T PRK06762 126 DMRRWWNP 133 (166)
T ss_pred HHHHHHhh
Confidence 66666644
No 43
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.91 E-value=1.7e-08 Score=89.26 Aligned_cols=135 Identities=20% Similarity=0.323 Sum_probs=79.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMA 110 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a 110 (321)
.+.+++|+||+||||||++..|+..++...|++|.+. ..-++ .....|+++.- + ....|....
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~--~~~~~------r~~~~g~~~~~-------~--~~~~~~~~~ 64 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLH--PAKNI------DKMSQGIPLTD-------E--DRLPWLERL 64 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccC--CHhHH------HHHhcCCCCCc-------c--cchHHHHHH
Confidence 3578999999999999999999999998888888752 11000 11123443211 1 111344433
Q ss_pred HHHHHHHhhcCCcEEEEcCchH--HHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhHHHHHhccHHHHHHHhhc
Q 020775 111 SFSIESTLNKGKVPIIVGGSNS--YIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFD 188 (321)
Q Consensus 111 ~~~i~~i~~~g~~pIivGGt~~--Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml~~Gll~Ev~~l~~ 188 (321)
.........+++.-+|+ +|.+ -.+.++. ....++.++||+++.+++.+|+.+|..+.+...+++...+.++
T Consensus 65 ~~~~~~~~~~~~~g~iv-~s~~~~~~R~~~r------~~~~~~~~v~l~a~~~~l~~Rl~~R~~~~~~~~vl~~Q~~~~e 137 (176)
T PRK09825 65 NDASYSLYKKNETGFIV-CSSLKKQYRDILR------KSSPNVHFLWLDGDYETILARMQRRAGHFMPPDLLQSQFDALE 137 (176)
T ss_pred HHHHHHHHhcCCCEEEE-EEecCHHHHHHHH------hhCCCEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHcC
Confidence 33333332333333444 3322 0112221 1234678999999999999999999754445566666666555
Q ss_pred C
Q 020775 189 P 189 (321)
Q Consensus 189 ~ 189 (321)
.
T Consensus 138 ~ 138 (176)
T PRK09825 138 R 138 (176)
T ss_pred C
Confidence 3
No 44
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.88 E-value=3.6e-09 Score=107.47 Aligned_cols=128 Identities=17% Similarity=0.272 Sum_probs=85.4
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHHHH
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMASFS 113 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~~~ 113 (321)
.|+|+|++||||||+++.||++++..+|++|.. .++..|.+ ..+..+.+....|++.-.+.
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~--------------i~~~~g~~-----i~~i~~~~Ge~~fr~~E~~~ 62 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEE--------------IERREGRS-----VRRIFEEDGEEYFRLKEKEL 62 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHH--------------HHHHcCCC-----HHHHHHHhhhHHHHHHHHHH
Confidence 489999999999999999999999999999985 22333322 11111345666788777778
Q ss_pred HHHHhhcCCcEEEEcCchHHHHHHhccccc-cccccCCeEEEEEeCCHHHHHHHHHHhHHHHHhccHHHHHHHhhcC
Q 020775 114 IESTLNKGKVPIIVGGSNSYIEALVDDEDY-GFRWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDP 189 (321)
Q Consensus 114 i~~i~~~g~~pIivGGt~~Y~~all~g~~~-~~r~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml~~Gll~Ev~~l~~~ 189 (321)
++++...+...|-+||.. +++..+. .++. ..+|||+++.+++.+|+..|...++..+ .++++++++.
T Consensus 63 l~~l~~~~~~Vis~Gggv-----v~~~~~r~~l~~---~~vI~L~as~e~l~~Rl~~~~RPLl~~~-~e~l~~L~~~ 130 (488)
T PRK13951 63 LRELVERDNVVVATGGGV-----VIDPENRELLKK---EKTLFLYAPPEVLMERVTTENRPLLREG-KERIREIWER 130 (488)
T ss_pred HHHHhhcCCEEEECCCcc-----ccChHHHHHHhc---CeEEEEECCHHHHHHHhccCCCCCcccc-HHHHHHHHHH
Confidence 888866655444466652 2221111 1221 2489999999999999987743333333 5777777764
No 45
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.88 E-value=5e-09 Score=91.64 Aligned_cols=121 Identities=17% Similarity=0.241 Sum_probs=66.0
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCc-----cccH----
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNA-----DFTA---- 103 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~-----~~~~---- 103 (321)
.+++|+||+|||||||+..|+..++.. ..+++ ...++|++.. ..|..++.++...... .|..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~----~~~~~--~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGD----PRVHF--VRRVITRPAS---AGGENHIALSTEEFDHREDGGAFALSWQA 72 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcC----CcEEE--eeEEcccCCC---CCCccccccCHHHHHHHHHCCCEEEEEee
Confidence 589999999999999999999987531 01111 0123333322 2244443332211110 0100
Q ss_pred -hhHHHHHHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 104 -QNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 104 -~~f~~~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
+.|.... ..+......|...|+.|+ .-+...+... ..+..+|||+++.+++.+||..|.
T Consensus 73 ~~~~~g~~-~~i~~~~~~g~~vv~~g~-~~~~~~~~~~-------~~~~~~i~l~~~~~~~~~Rl~~R~ 132 (179)
T TIGR02322 73 HGLSYGIP-AEIDQWLEAGDVVVVNGS-RAVLPEARQR-------YPNLLVVNITASPDVLAQRLAARG 132 (179)
T ss_pred cCccccCh-HHHHHHHhcCCEEEEECC-HHHHHHHHHH-------CCCcEEEEEECCHHHHHHHHHHcC
Confidence 0011111 124445567776666655 3344433221 124578999999999999999884
No 46
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.88 E-value=2.7e-08 Score=93.99 Aligned_cols=130 Identities=18% Similarity=0.180 Sum_probs=74.1
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhC-CCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHH
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRF-PAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMA 110 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l-~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a 110 (321)
+++|+++|++||||||+|..|++++ +..+||.|.+ .+.+ .+..- .+...... -.........
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~--r~~~------------~~~~~--~~~~~~~~-~~~~~~~~~~ 64 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDL--RQSL------------FGHGE--WGEYKFTK-EKEDLVTKAQ 64 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHH--HHHh------------cCCCc--ccccccCh-HHHHHHHHHH
Confidence 5789999999999999999999999 8999999985 1111 00000 00000000 0001111222
Q ss_pred HHHHHHHhhcCCcEEEEcCchH---HHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhHHHHHhccHHHH
Q 020775 111 SFSIESTLNKGKVPIIVGGSNS---YIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDE 182 (321)
Q Consensus 111 ~~~i~~i~~~g~~pIivGGt~~---Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml~~Gll~E 182 (321)
...+.+....|...| +.+++. +.+.+..-. -...+.+.+++|+++.+++.+|+.+|.++.+..-.++.
T Consensus 65 ~~~~~~~l~~g~~vI-id~~~~~~~~~~~~~~la---~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~~~~~i~~ 135 (300)
T PHA02530 65 EAAALAALKSGKSVI-ISDTNLNPERRRKWKELA---KELGAEFEEKVFDVPVEELVKRNRKRGERAVPEDVLRS 135 (300)
T ss_pred HHHHHHHHHcCCeEE-EeCCCCCHHHHHHHHHHH---HHcCCeEEEEEeCCCHHHHHHHHHccCcCCCCHHHHHH
Confidence 233444555666544 444432 333222100 01134566899999999999999999655454444443
No 47
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.86 E-value=1.7e-08 Score=88.21 Aligned_cols=130 Identities=12% Similarity=0.189 Sum_probs=70.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC-----CEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccH
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP-----AEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTA 103 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~-----~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~ 103 (321)
..++.+|+|+|++||||||+|..|++++. ..+++.|.+ ++.+ ++. ++ + ....
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~--r~~~---------------~~~--~~-~---~~~~ 60 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDEL--REIL---------------GHY--GY-D---KQSR 60 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHH--Hhhc---------------CCC--CC-C---HHHH
Confidence 45778999999999999999999999885 456666653 2211 100 00 0 0111
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhHHHHHhccHHHHH
Q 020775 104 QNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEV 183 (321)
Q Consensus 104 ~~f~~~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml~~Gll~Ev 183 (321)
.+.........+.+...|...|+.|+ +.+ +.+..- .... ..+...+||+++.+++.+|+.++ ++.....+++
T Consensus 61 ~~~~~~~~~l~~~l~~~g~~VI~~~~-~~~-~~~~~~-~~~~--~~~~~~v~l~~~~e~~~~R~~~~---l~~~~~~~~~ 132 (176)
T PRK05541 61 IEMALKRAKLAKFLADQGMIVIVTTI-SMF-DEIYAY-NRKH--LPNYFEVYLKCDMEELIRRDQKG---LYTKALKGEI 132 (176)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeC-CcH-HHHHHH-HHhh--cCCeEEEEEeCCHHHHHHhchhh---HHHHHHcCcc
Confidence 11111111122224456665555544 333 111110 0011 11246899999999999998644 2333344566
Q ss_pred HHhhcC
Q 020775 184 RKFFDP 189 (321)
Q Consensus 184 ~~l~~~ 189 (321)
.+++..
T Consensus 133 ~~~~~~ 138 (176)
T PRK05541 133 KNVVGV 138 (176)
T ss_pred cccccC
Confidence 666654
No 48
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.85 E-value=2.9e-08 Score=86.96 Aligned_cols=129 Identities=16% Similarity=0.111 Sum_probs=71.5
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEE--EecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHH
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEI--INSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDM 109 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~ei--IsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~ 109 (321)
+++|+++||+||||||+|+.|++.++... ++.|.+- ..++ ........++...- +.....+.+. ..+...
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~--~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~-~~~y~~ 73 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFI--EALP----LKCQDAEGGIEFDG-DGGVSPGPEF-RLLEGA 73 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHH--HhcC----hhhcccccccccCc-cCCcccchHH-HHHHHH
Confidence 57999999999999999999999987543 4677641 1111 00000001111000 0000111111 123333
Q ss_pred HHHHHHHHhhcCCcEEEEcCch--HHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhHHH
Q 020775 110 ASFSIESTLNKGKVPIIVGGSN--SYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERVDR 173 (321)
Q Consensus 110 a~~~i~~i~~~g~~pIivGGt~--~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~~~ 173 (321)
....+..+.+.|...|+..... ..++..+. .+ ...++.++|+.++.++|.+|+.+|.+.
T Consensus 74 ~~~~~~~~l~~G~~VIvD~~~~~~~~~r~~~~----~~-~~~~~~~v~l~~~~~~l~~R~~~R~~~ 134 (175)
T cd00227 74 WYEAVAAMARAGANVIADDVFLGRAALQDCWR----SF-VGLDVLWVGVRCPGEVAEGRETARGDR 134 (175)
T ss_pred HHHHHHHHHhCCCcEEEeeeccCCHHHHHHHH----Hh-cCCCEEEEEEECCHHHHHHHHHhcCCc
Confidence 3445667778888766653321 11111111 11 224678999999999999999999754
No 49
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.84 E-value=9.6e-09 Score=89.83 Aligned_cols=125 Identities=13% Similarity=0.162 Sum_probs=68.2
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMA 110 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a 110 (321)
+.++|+|+||+||||||++..|++.+|..++++|.+ +.+.+.-.+ +...... . ++. . ..........+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~-~~~~~~~~~--~~~~~~~---~-~~~--~-~~~~~~~~~~~~l 71 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDL-LRAEVASGS--ERGKQLQ---A-IME--S-GDLVPLDTVLDLL 71 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHH-HHHHHhcCC--HHHHHHH---H-HHH--C-CCCCCHHHHHHHH
Confidence 457999999999999999999999999999999775 233322111 1111100 0 000 0 0111111222222
Q ss_pred HHHHHHHhhcCCcEEEEcCch--HHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 111 SFSIESTLNKGKVPIIVGGSN--SYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 111 ~~~i~~i~~~g~~pIivGGt~--~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
...+......+...|+.|-.. ...+.+-. .+ .....+|||+++.+.+.+|+..|.
T Consensus 72 ~~~~~~~~~~~~~~i~dg~~~~~~q~~~~~~----~~--~~~~~vi~l~~~~~~~~~Rl~~R~ 128 (188)
T TIGR01360 72 KDAMVAALGTSKGFLIDGYPREVKQGEEFER----RI--GPPTLVLYFDCSEDTMVKRLLKRA 128 (188)
T ss_pred HHHHHcccCcCCeEEEeCCCCCHHHHHHHHH----cC--CCCCEEEEEECCHHHHHHHHHccc
Confidence 223333334555455544211 11111111 01 124578999999999999999884
No 50
>PRK06547 hypothetical protein; Provisional
Probab=98.84 E-value=2.8e-09 Score=94.03 Aligned_cols=127 Identities=17% Similarity=0.245 Sum_probs=70.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHH
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDM 109 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~ 109 (321)
..+.+|+|.|++||||||++..|++.++..+++.|+. |++.+-.++ ..++ +.-+++..-.+. .+. .+|...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~--~~~~~~~~~---~~~~--l~~~~l~~g~~~-~~~-yd~~~~ 83 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDL--YPGWHGLAA---ASEH--VAEAVLDEGRPG-RWR-WDWANN 83 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccce--ecccccCCh---HHHH--HHHHHHhCCCCc-eec-CCCCCC
Confidence 3567899999999999999999999999999999994 664321110 0000 001111100000 000 111111
Q ss_pred HHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 110 ASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 110 a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
...... ....+...|+.|+..++ ..+.. .+.......+|||++|.++..+|+.+|=
T Consensus 84 ~~~~~~-~l~~~~vVIvEG~~al~-~~~r~----~~d~~g~v~~I~ld~~~~vr~~R~~~Rd 139 (172)
T PRK06547 84 RPGDWV-SVEPGRRLIIEGVGSLT-AANVA----LASLLGEVLTVWLDGPEALRKERALARD 139 (172)
T ss_pred CCCCcE-EeCCCCeEEEEehhhcc-HHHHH----HhccCCCEEEEEEECCHHHHHHHHHhcC
Confidence 000000 11234455566765443 22211 1112223579999999999999999993
No 51
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.84 E-value=9.5e-09 Score=83.77 Aligned_cols=33 Identities=36% Similarity=0.669 Sum_probs=31.3
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
+|+|+||+||||||+|..||++++..+|+.|.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~ 33 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDL 33 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecce
Confidence 589999999999999999999999999999983
No 52
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.83 E-value=1.1e-08 Score=98.18 Aligned_cols=118 Identities=18% Similarity=0.299 Sum_probs=77.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHH
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCD 108 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~ 108 (321)
..++..|+|+|++||||||++..||+++|..+|..|.. + ++..|++- .+....+....|++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~-i-------------~~~~G~~i-----~ei~~~~G~~~fr~ 190 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNRE-I-------------EREAGLSV-----SEIFALYGQEGYRR 190 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHH-H-------------HHHhCCCH-----HHHHHHHCHHHHHH
Confidence 56788999999999999999999999999999988864 1 22233221 11112345667877
Q ss_pred HHHHHHHHHhhcCCcEEEEcCchHHHH-HHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 109 MASFSIESTLNKGKVPIIVGGSNSYIE-ALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 109 ~a~~~i~~i~~~g~~pIivGGt~~Y~~-all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
...+.+..+.......||..|.+.+.. ..+. .+ .-++.+|||+++.+.+.+|+.+|.
T Consensus 191 ~e~~~l~~ll~~~~~~VI~~Ggg~v~~~~~~~----~l--~~~~~~V~L~a~~e~~~~Rl~~r~ 248 (309)
T PRK08154 191 LERRALERLIAEHEEMVLATGGGIVSEPATFD----LL--LSHCYTVWLKASPEEHMARVRAQG 248 (309)
T ss_pred HHHHHHHHHHhhCCCEEEECCCchhCCHHHHH----HH--HhCCEEEEEECCHHHHHHHHhcCC
Confidence 777778876554443444433332211 1110 01 113579999999999999998774
No 53
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.81 E-value=2.5e-08 Score=87.34 Aligned_cols=38 Identities=16% Similarity=0.423 Sum_probs=32.9
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCc
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGL 72 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl 72 (321)
+|+|+||+||||||+|..||++++..+||+|.+ +++.+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~-lr~~~ 38 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDL-LRAEI 38 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChH-HHHHH
Confidence 589999999999999999999999999998765 34433
No 54
>PRK08118 topology modulation protein; Reviewed
Probab=98.81 E-value=3.5e-08 Score=86.47 Aligned_cols=99 Identities=15% Similarity=0.208 Sum_probs=64.9
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHHH
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMASF 112 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~~ 112 (321)
+-|+|+||+||||||||..|++.++.++++.|.+.-..|. . ..+..++. +
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w----------------------~----~~~~~~~~----~ 51 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNW----------------------E----GVPKEEQI----T 51 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCC----------------------c----CCCHHHHH----H
Confidence 3589999999999999999999999999999986211110 0 11111232 3
Q ss_pred HHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 113 SIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 113 ~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
.++++.+. ..-|+.|.-+-.++..+ .....+|||++|.+++..|+.+|.
T Consensus 52 ~~~~~~~~-~~wVidG~~~~~~~~~l---------~~~d~vi~Ld~p~~~~~~R~~~R~ 100 (167)
T PRK08118 52 VQNELVKE-DEWIIDGNYGGTMDIRL---------NAADTIIFLDIPRTICLYRAFKRR 100 (167)
T ss_pred HHHHHhcC-CCEEEeCCcchHHHHHH---------HhCCEEEEEeCCHHHHHHHHHHHH
Confidence 34444443 34666665332222211 123468999999999999999996
No 55
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.79 E-value=6.1e-09 Score=90.05 Aligned_cols=122 Identities=22% Similarity=0.309 Sum_probs=77.7
Q ss_pred CcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHHHHHHHHhhc
Q 020775 41 TGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMASFSIESTLNK 120 (321)
Q Consensus 41 TGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~~~i~~i~~~ 120 (321)
+||||||+++.||++++.+++..|.+ .++..|. +..+.-.......|++...+++.++...
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~--------------i~~~~g~-----si~~i~~~~G~~~fr~~E~~~l~~l~~~ 61 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDE--------------IEERTGM-----SISEIFAEEGEEAFRELESEALRELLKE 61 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHH--------------HHHHHTS-----HHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHH--------------HHHHhCC-----cHHHHHHcCChHHHHHHHHHHHHHHhcc
Confidence 59999999999999999999999987 2333331 1111123456678888888899998877
Q ss_pred CCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhHHHHHhccHH--HHHHHhh
Q 020775 121 GKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMI--DEVRKFF 187 (321)
Q Consensus 121 g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml~~Gll--~Ev~~l~ 187 (321)
....|.+||....-....+ -+ +-...+|||+.+.+.+.+|+..+-.+.+-.+-. ++...++
T Consensus 62 ~~~VIa~GGG~~~~~~~~~----~L--~~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~ 124 (158)
T PF01202_consen 62 NNCVIACGGGIVLKEENRE----LL--KENGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELL 124 (158)
T ss_dssp SSEEEEE-TTGGGSHHHHH----HH--HHHSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHH
T ss_pred CcEEEeCCCCCcCcHHHHH----HH--HhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHH
Confidence 6666667665321111100 01 123579999999999999998887644433332 2444443
No 56
>PRK07261 topology modulation protein; Provisional
Probab=98.79 E-value=7e-08 Score=84.78 Aligned_cols=99 Identities=15% Similarity=0.221 Sum_probs=65.0
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHHHH
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMASFS 113 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~~~ 113 (321)
.|+|+|++||||||||..|++.++.++++.|.++...+. .+.+..+|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~--------------------------~~~~~~~~~~~---- 51 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW--------------------------QERDDDDMIAD---- 51 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc--------------------------ccCCHHHHHHH----
Confidence 589999999999999999999999999999997432110 01122344443
Q ss_pred HHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 114 IESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 114 i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
+.++..++. .|+.|+. ...+... .+ ... ..++||++|......|+-+|.
T Consensus 52 ~~~~~~~~~--wIidg~~--~~~~~~~---~l-~~a-d~vI~Ld~p~~~~~~R~lkR~ 100 (171)
T PRK07261 52 ISNFLLKHD--WIIDGNY--SWCLYEE---RM-QEA-DQIIFLNFSRFNCLYRAFKRY 100 (171)
T ss_pred HHHHHhCCC--EEEcCcc--hhhhHHH---HH-HHC-CEEEEEcCCHHHHHHHHHHHH
Confidence 344445554 5556662 2212111 11 122 358899999999999998886
No 57
>PRK03839 putative kinase; Provisional
Probab=98.79 E-value=2.9e-08 Score=87.09 Aligned_cols=33 Identities=21% Similarity=0.450 Sum_probs=31.4
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.|+|+|++||||||++..||++++..+++.|.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~ 34 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEF 34 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhh
Confidence 589999999999999999999999999999975
No 58
>PRK14530 adenylate kinase; Provisional
Probab=98.78 E-value=3.8e-08 Score=89.10 Aligned_cols=35 Identities=29% Similarity=0.535 Sum_probs=32.4
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.+.|+|+||+||||||+|..||++++..+|+.|.+
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~ 37 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDA 37 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHH
Confidence 45799999999999999999999999999999876
No 59
>PRK08233 hypothetical protein; Provisional
Probab=98.74 E-value=8.6e-08 Score=83.36 Aligned_cols=116 Identities=16% Similarity=0.242 Sum_probs=63.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCC-CEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFP-AEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDM 109 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~-~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~ 109 (321)
++.+|+|+|++||||||||..|+++++ ..++..|.. |... ...+.......- ..+ +.+....+.+
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~--~~~~-------~~~~~~~~~~~~---~~~-~~~~~~~~~~- 67 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY--DFDN-------CPEDICKWIDKG---ANY-SEWVLTPLIK- 67 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE--Eccc-------Cchhhhhhhhcc---CCh-hhhhhHHHHH-
Confidence 457999999999999999999999996 556666764 2111 011110000000 000 2233333333
Q ss_pred HHHHHHHHhhcCCcE-EEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 110 ASFSIESTLNKGKVP-IIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 110 a~~~i~~i~~~g~~p-IivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
.+....+....+ |+++|...+.. +.++..+ ...|||+++.+++.+|+.+|.
T Consensus 68 ---~l~~~~~~~~~~~vivd~~~~~~~-------~~~~~~~-d~~i~l~~~~~~~~~R~~~R~ 119 (182)
T PRK08233 68 ---DIQELIAKSNVDYIIVDYPFAYLN-------SEMRQFI-DVTIFIDTPLDIAMARRILRD 119 (182)
T ss_pred ---HHHHHHcCCCceEEEEeeehhhcc-------HHHHHHc-CEEEEEcCCHHHHHHHHHHHH
Confidence 344444444333 45565422111 1122223 378999999999988877774
No 60
>PLN02200 adenylate kinase family protein
Probab=98.74 E-value=5.8e-08 Score=89.71 Aligned_cols=37 Identities=14% Similarity=0.356 Sum_probs=33.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
+.+.+|+|+||+||||||+|..||+++|..+|+++.+
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdl 77 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDL 77 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHH
Confidence 3567899999999999999999999999999999776
No 61
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.73 E-value=3.8e-08 Score=91.02 Aligned_cols=126 Identities=21% Similarity=0.352 Sum_probs=71.5
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCC-----CEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHH
Q 020775 34 VLILMGATGTGKSRLSIDMATRFP-----AEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCD 108 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~-----~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~ 108 (321)
+|+++|++||||||+|..|++.++ ..+++.|.+. ..+ +. ..+.+ ...+.+
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr--~~~--------------------~~--~~~~~-e~~~~~ 55 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIR--ESF--------------------PV--WKEKY-EEFIRD 55 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHH--HHh--------------------HH--hhHHh-HHHHHH
Confidence 589999999999999999999873 3456666531 000 00 00001 112233
Q ss_pred HHHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccc-cccCCeEEEEEeCCHHHHHHHHHHhHHHHHhccHHHHHHHhh
Q 020775 109 MASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGF-RWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFF 187 (321)
Q Consensus 109 ~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~-r~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml~~Gll~Ev~~l~ 187 (321)
.....++...++|.. ||+.|+++|- .......... ....+++++|+++|.+.+.+|...|.+ ......++++..-+
T Consensus 56 ~~~~~i~~~l~~~~~-VI~D~~~~~~-~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~-~~~~~~i~~l~~r~ 132 (249)
T TIGR03574 56 STLYLIKTALKNKYS-VIVDDTNYYN-SMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE-KIPNEVIKDMYEKF 132 (249)
T ss_pred HHHHHHHHHHhCCCe-EEEeccchHH-HHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC-CCCHHHHHHHHHhh
Confidence 333456666677764 5555555442 2111000000 123567899999999999999998853 23333444444433
No 62
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3.2e-08 Score=90.77 Aligned_cols=81 Identities=26% Similarity=0.402 Sum_probs=72.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCc--cccHhhH
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNA--DFTAQNF 106 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~--~~~~~~f 106 (321)
.+.+.+.+|+||+||||||||..|+.+-+.+|.+.+- +|+|-||+.-.|++..+.|+ ++.+..|.+ ..+..+|
T Consensus 27 v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I--~~~GedI~~l~~~ERAr~Gi---fLafQ~P~ei~GV~~~~f 101 (251)
T COG0396 27 VKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEI--LFDGEDILELSPDERARAGI---FLAFQYPVEIPGVTNSDF 101 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceE--EECCcccccCCHhHHHhcCC---EEeecCCccCCCeeHHHH
Confidence 5678899999999999999999999999999999887 69999999988888888888 888998887 7899999
Q ss_pred HHHHHHHH
Q 020775 107 CDMASFSI 114 (321)
Q Consensus 107 ~~~a~~~i 114 (321)
.+.|....
T Consensus 102 Lr~a~n~~ 109 (251)
T COG0396 102 LRAAMNAR 109 (251)
T ss_pred HHHHHHhh
Confidence 99887653
No 63
>PRK14531 adenylate kinase; Provisional
Probab=98.69 E-value=8.3e-08 Score=84.84 Aligned_cols=39 Identities=13% Similarity=0.361 Sum_probs=33.6
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCc
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGL 72 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl 72 (321)
..|+|+||+||||||+|..||+++|..+||++.+ +.+.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~-lr~~~ 41 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDL-LRSEV 41 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccH-HHHHH
Confidence 4689999999999999999999999999999775 34443
No 64
>PRK12338 hypothetical protein; Provisional
Probab=98.69 E-value=2.2e-07 Score=89.46 Aligned_cols=140 Identities=19% Similarity=0.284 Sum_probs=76.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEE-ecCcce-eecCccccCCCCCHHhhcCCCcccccccCCCcccc-----
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEII-NSDKIQ-VYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFT----- 102 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiI-saDs~Q-vYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~----- 102 (321)
.+|.+|+|.|++||||||+|..||++++...+ +.|.+. +-++. ...+..+. ...-.|+-...+.+.+.+.
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~--~~~~~~P~-l~~ssy~a~~~l~~~~~~~~~~~~ 78 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGI--IGKEYAPA-LHKSSYNAYTALRDKENFKNNEEL 78 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCC--CCcccCch-hhcccHHHHhhcCCcccccchHHH
Confidence 45789999999999999999999999998866 777652 11111 00000000 0000011011111111111
Q ss_pred -HhhHHHHHHHH---HHHHhh---cCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhHHHHH
Q 020775 103 -AQNFCDMASFS---IESTLN---KGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERVDRMV 175 (321)
Q Consensus 103 -~~~f~~~a~~~---i~~i~~---~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml 175 (321)
..-|...+.-. ++.+.. +++.+||+-|.++.-. ++.. ..+....+..+++|.++.+...+|...|...|-
T Consensus 79 i~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~-~i~~--~~~~~~~~v~~~vl~~dee~h~~Rf~~R~~~~~ 155 (319)
T PRK12338 79 ICAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPG-LIDI--EQFEENASIHFFILSADEEVHKERFVKRAMEIK 155 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHH-HHhh--hhhcccCceEEEEEECCHHHHHHHHHHhhhccC
Confidence 23454444322 222322 4666888888854211 1110 011122356678888999999999999987663
No 65
>PRK04182 cytidylate kinase; Provisional
Probab=98.69 E-value=3.7e-08 Score=85.36 Aligned_cols=112 Identities=13% Similarity=0.267 Sum_probs=62.9
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHHHH
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMASFS 113 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~~~ 113 (321)
+|+|+|++||||||+|..||++++.+++++|.+ ++.+. +..|.+..-++.. .+... .+.......
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~~--~~~~~---------~~~g~~~~~~~~~--~~~~~--~~~~~~~~~ 66 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEI--FRELA---------KERGMSLEEFNKY--AEEDP--EIDKEIDRR 66 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecHHHH--HHHHH---------HHcCCCHHHHHHH--hhcCc--hHHHHHHHH
Confidence 689999999999999999999999999997653 22110 1112111100000 00000 011222233
Q ss_pred HHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 114 IESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 114 i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
+..+...+...|+.|..+-| ++. ......|||++|.+.+.+|+.+|-
T Consensus 67 ~~~~~~~~~~~Vi~g~~~~~---~~~--------~~~~~~V~l~a~~e~~~~Rl~~r~ 113 (180)
T PRK04182 67 QLEIAEKEDNVVLEGRLAGW---MAK--------DYADLKIWLKAPLEVRAERIAERE 113 (180)
T ss_pred HHHHHhcCCCEEEEEeecce---Eec--------CCCCEEEEEECCHHHHHHHHHhcc
Confidence 33443244445555532111 111 114568899999999999998874
No 66
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.68 E-value=1.2e-07 Score=84.89 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=30.8
Q ss_pred EEEEEcCCcccHHHHHHHHHhhC-CCEEEecCcc
Q 020775 34 VLILMGATGTGKSRLSIDMATRF-PAEIINSDKI 66 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l-~~eiIsaDs~ 66 (321)
+|+|+|++||||||+|..|++.+ +..+|+.|.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf 34 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDF 34 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccc
Confidence 58999999999999999999999 6899999996
No 67
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.67 E-value=6.5e-08 Score=88.46 Aligned_cols=39 Identities=21% Similarity=0.483 Sum_probs=34.6
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCc
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGL 72 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl 72 (321)
+.+|+|.||+||||||++..||++++..++++|.+ |+.+
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~--~r~~ 40 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAM--YRAI 40 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchH--HHHH
Confidence 36899999999999999999999999999998885 6544
No 68
>PRK14532 adenylate kinase; Provisional
Probab=98.65 E-value=1.1e-07 Score=83.97 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=31.0
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.|+|+||+||||||+|..||++++..+|++|.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~ 34 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDM 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHH
Confidence 488999999999999999999999999999875
No 69
>PRK08356 hypothetical protein; Provisional
Probab=98.65 E-value=2.5e-07 Score=82.62 Aligned_cols=119 Identities=11% Similarity=0.086 Sum_probs=65.4
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHH-
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMA- 110 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a- 110 (321)
..+|+|+||+||||||+|..|+ .++..+|++.... +..-+..+.++++++........+...|.+.+
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~-----------~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~ 72 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPL-----------IDLLTHNVSDYSWVPEVPFKGEPTRENLIELGR 72 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcc-----------cccccccccccccccHHHHhhccccccHHHHHH
Confidence 4689999999999999999996 4888888877641 11223344555554332222111112222111
Q ss_pred ------------HHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 111 ------------SFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 111 ------------~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
...++.+. ... .+++-|--..-++ ..++ .....+++++++.+++.+||..|.
T Consensus 73 ~~~~~yG~~~~~~~~~~~~~-~~~-~ividG~r~~~q~------~~l~-~~~~~vi~l~~~~~~~~~Rl~~R~ 136 (195)
T PRK08356 73 YLKEKYGEDILIRLAVDKKR-NCK-NIAIDGVRSRGEV------EAIK-RMGGKVIYVEAKPEIRFERLRRRG 136 (195)
T ss_pred HHHHhcCcHHHHHHHHHHhc-cCC-eEEEcCcCCHHHH------HHHH-hcCCEEEEEECCHHHHHHHHHhcC
Confidence 11233332 222 2444342111110 0111 123468899999999999999885
No 70
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.62 E-value=1.7e-07 Score=82.39 Aligned_cols=32 Identities=22% Similarity=0.536 Sum_probs=30.7
Q ss_pred EEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 35 LILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 35 IvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
|+|+||+||||||+|..||++++..+|++|.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l 33 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDL 33 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHH
Confidence 79999999999999999999999999999885
No 71
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.62 E-value=2.2e-07 Score=77.73 Aligned_cols=104 Identities=13% Similarity=0.128 Sum_probs=63.0
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHHHH
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMASFS 113 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~~~ 113 (321)
+|+|+|++||||||+|..||++++.++++.|.+ ..++....... ..+...+.+...+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i-------------~~e~~~~~~~~---------~~~~~~i~~~l~~~ 58 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGI-------------RTEEVGKLASE---------VAAIPEVRKALDER 58 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccC-------------CHHHHHHHHHH---------hcccHhHHHHHHHH
Confidence 589999999999999999999999999999832 12222110000 00112334444445
Q ss_pred HHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 114 IESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 114 i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
+.++...+ ..|+.| ... +. .+ .......|||+++.+...+|+.+|.
T Consensus 59 ~~~~~~~~-~~Vidg-~~~-------~~--~~-~~~~~~~i~l~~~~~~r~~R~~~r~ 104 (147)
T cd02020 59 QRELAKKP-GIVLEG-RDI-------GT--VV-FPDADLKIFLTASPEVRAKRRAKQL 104 (147)
T ss_pred HHHHhhCC-CEEEEe-eee-------ee--EE-cCCCCEEEEEECCHHHHHHHHHHHH
Confidence 55554433 344443 310 10 11 1113467999999999999998874
No 72
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.61 E-value=1.2e-07 Score=85.44 Aligned_cols=124 Identities=15% Similarity=0.107 Sum_probs=65.2
Q ss_pred EEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHHHHH
Q 020775 35 LILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMASFSI 114 (321)
Q Consensus 35 IvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~~~i 114 (321)
|+|+||+||||||+|..||++++..+|++|.+ +.+.+.-.| ...+. .-+..+......-....+...+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdl-lr~~~~~~~---~~~~~------~~~~~~~g~~vp~~~~~~l~~~~i 71 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDL-LRAEIKAGT---PLGKK------AKEYMEKGELVPDEIVNQLVKERL 71 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHH-HHHhhcccc---HHHHH------HHHHHhCCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999999999999875 333222111 00000 000011111112122333333333
Q ss_pred HHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 115 ESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 115 ~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
......++..|+.|--...-++-... ..+ ......+|+|+++.+++.+|+..|.
T Consensus 72 ~~~~~~~~~~ilDGfPrt~~Qa~~l~--~~~-~~~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 72 TQNQDNENGFILDGFPRTLSQAEALD--ALL-KEKIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred hcCcccCCcEEEeCCCCCHHHHHHHH--HHh-ccCCCEEEEEECCHHHHHHHHHCCC
Confidence 32211233344444222221111100 001 0023478999999999999999984
No 73
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.60 E-value=2e-07 Score=80.52 Aligned_cols=108 Identities=18% Similarity=0.205 Sum_probs=64.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMA 110 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a 110 (321)
..+.|+|+|.+|+||||++.+||+.++.+.|+.-.+ ..|. +|+. ..+++|.-..+-++-
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~--------------vkEn-----~l~~--gyDE~y~c~i~DEdk 64 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIEISDL--------------VKEN-----NLYE--GYDEEYKCHILDEDK 64 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHhCCceEehhhH--------------Hhhh-----cchh--cccccccCccccHHH
Confidence 456899999999999999999999999998886543 1111 1211 112333332222221
Q ss_pred -HHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 111 -SFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 111 -~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
...++.....|...|=--|.+ -|..+.--+++.|.+|..+||+||..|.
T Consensus 65 v~D~Le~~m~~Gg~IVDyHgCd------------~FperwfdlVvVLr~~~s~LY~RL~sRg 114 (176)
T KOG3347|consen 65 VLDELEPLMIEGGNIVDYHGCD------------FFPERWFDLVVVLRTPNSVLYDRLKSRG 114 (176)
T ss_pred HHHHHHHHHhcCCcEEeecccC------------ccchhheeEEEEEecCchHHHHHHHHcC
Confidence 122333333333222112221 1333444578889999999999999996
No 74
>PRK14527 adenylate kinase; Provisional
Probab=98.60 E-value=2e-07 Score=82.86 Aligned_cols=37 Identities=27% Similarity=0.503 Sum_probs=34.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.++++|+|+||+||||||+|..||++++...++.|.+
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~ 40 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDI 40 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHH
Confidence 4678999999999999999999999999999999876
No 75
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.59 E-value=3.9e-07 Score=81.62 Aligned_cols=124 Identities=22% Similarity=0.331 Sum_probs=69.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC---CCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCc--cccHh
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF---PAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNA--DFTAQ 104 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l---~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~--~~~~~ 104 (321)
..|.++++.|++|||||+++..+...+ +..+||+|.+. +.+ |.-.+. .. .++.+ ..+..
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r--~~~------p~~~~~-------~~-~~~~~~~~~~~~ 76 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFR--QFH------PDYDEL-------LK-ADPDEASELTQK 76 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGG--GGS------TTHHHH-------HH-HHCCCTHHHHHH
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHH--Hhc------cchhhh-------hh-hhhhhhHHHHHH
Confidence 578899999999999999999999987 56789999862 111 111111 11 01111 22233
Q ss_pred hHHHHHHHHHHHHhhcCCcEEEEcCc---hHHHHHHhcccccccc-ccCCeEEEEEeCCHHHHHHHHHHhHHHH
Q 020775 105 NFCDMASFSIESTLNKGKVPIIVGGS---NSYIEALVDDEDYGFR-WKYDCCFLWVDVSMPVLRSFVSERVDRM 174 (321)
Q Consensus 105 ~f~~~a~~~i~~i~~~g~~pIivGGt---~~Y~~all~g~~~~~r-~~~~~~~i~L~~~~~~L~~RL~~R~~~M 174 (321)
+-...+...++.+.+++...|+ -|| ..++..+++. ++ ..|.+.++++.++.+.-..|+..|..+=
T Consensus 77 ~a~~~~~~~~~~a~~~~~nii~-E~tl~~~~~~~~~~~~----~k~~GY~v~l~~v~~~~e~s~~rv~~R~~~~ 145 (199)
T PF06414_consen 77 EASRLAEKLIEYAIENRYNIIF-EGTLSNPSKLRKLIRE----AKAAGYKVELYYVAVPPELSIERVRQRYEEG 145 (199)
T ss_dssp HHHHHHHHHHHHHHHCT--EEE-E--TTSSHHHHHHHHH----HHCTT-EEEEEEE---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCEEE-ecCCCChhHHHHHHHH----HHcCCceEEEEEEECCHHHHHHHHHHHHHcc
Confidence 3333445566777766664444 444 2344434432 22 4678888899999999999999997443
No 76
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.58 E-value=5.4e-07 Score=90.56 Aligned_cols=132 Identities=17% Similarity=0.226 Sum_probs=80.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCE-EEecCcc-eeecCccccCCCCCHHhhcCCCc------cccccc-CC---
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAE-IINSDKI-QVYEGLDIVTNKITEEEQCGIPH------HLLGIQ-HP--- 97 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~e-iIsaDs~-QvYkgl~I~T~k~~~~E~~gvph------hll~~~-~~--- 97 (321)
.+|.+|+++|+|||||||+|..||.+++.. +|++|++ ++++++- +.+. +|. +-.... .+
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~i------~~e~---~P~Lh~Sty~A~~~~~~~~~~ 323 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAMV------SKDL---LPTLHASTFNAWRALLPPGEG 323 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhhc------chhh---ccchhhchhhHHhhccCcccc
Confidence 358899999999999999999999999987 8899994 6777661 1111 121 000001 01
Q ss_pred --Cccc---cHhhHHHHHHHH-------HHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeC-CHHHHH
Q 020775 98 --NADF---TAQNFCDMASFS-------IESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDV-SMPVLR 164 (321)
Q Consensus 98 --~~~~---~~~~f~~~a~~~-------i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~-~~~~L~ 164 (321)
.+.+ -...|.+.|... ++....+|. .||+-|.+++-.-+-. .......++.|.+.+ +.+...
T Consensus 324 ~~~~~~~~~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~-SvIIEGVHl~P~~i~~----~~~~~~~~i~flv~isdeeeH~ 398 (475)
T PRK12337 324 LPAEPTRAEVLRGFRDQVQQVAVGLGAIQERSAQEGT-SLVLEGVHLVPGYLRH----PYQAGALVVPMLVTLPDEALHR 398 (475)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-eEEEECCCCCHHHHHH----HHhcCCceEEEEEEECCHHHHH
Confidence 1112 245677766544 445556665 5666677664332211 111223344444444 778899
Q ss_pred HHHHHhHHHHH
Q 020775 165 SFVSERVDRMV 175 (321)
Q Consensus 165 ~RL~~R~~~Ml 175 (321)
+|...|...|-
T Consensus 399 ~Rf~~Ra~~~~ 409 (475)
T PRK12337 399 RRFELRDRETG 409 (475)
T ss_pred HHHHHHhhhcc
Confidence 99999987774
No 77
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.56 E-value=7.6e-08 Score=78.40 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=21.2
Q ss_pred EEEEcCCcccHHHHHHHHHhhC
Q 020775 35 LILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 35 IvI~GpTGSGKStLa~~LA~~l 56 (321)
|+|.|++||||||+|..|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999997
No 78
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.56 E-value=3.4e-07 Score=78.78 Aligned_cols=33 Identities=21% Similarity=0.541 Sum_probs=30.9
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
+|+|+|++||||||+|..||++++.++++.|.+
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~ 34 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISAGDI 34 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecHHHH
Confidence 799999999999999999999999999998763
No 79
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.52 E-value=3.9e-07 Score=93.28 Aligned_cols=104 Identities=14% Similarity=0.169 Sum_probs=72.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHH
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCD 108 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~ 108 (321)
..++.+|+++|++||||||+|..+++..+..+||.|.+. .| .
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg-------------------------------------~~-~ 407 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLG-------------------------------------ST-Q 407 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHH-------------------------------------HH-H
Confidence 457889999999999999999999999999999999741 01 1
Q ss_pred HHHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 109 MASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 109 ~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
.+...+++.+.+|+ ++|+..|+..-..-..-..-.-...+++.+++++++.+++.+|+..|-
T Consensus 408 ~~~~~a~~~L~~G~-sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~ 469 (526)
T TIGR01663 408 NCLTACERALDQGK-RCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIAFRE 469 (526)
T ss_pred HHHHHHHHHHhCCC-cEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHHhhc
Confidence 23344556667776 566666654221110000000013467889999999999999999994
No 80
>PRK01184 hypothetical protein; Provisional
Probab=98.51 E-value=3.8e-07 Score=80.18 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=28.9
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCc
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDK 65 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs 65 (321)
++|+|+||+||||||++. ++++++..++++|.
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d 33 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGD 33 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhH
Confidence 589999999999999987 88999999999754
No 81
>PTZ00301 uridine kinase; Provisional
Probab=98.51 E-value=6.3e-07 Score=81.61 Aligned_cols=121 Identities=22% Similarity=0.315 Sum_probs=67.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCC-------CEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFP-------AEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTA 103 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~-------~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~ 103 (321)
+..+|.|+||+||||||||..|+++++ ..+++.|.+ |+.-.. .+..+. + ..++-.| +.++.
T Consensus 2 ~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~y--y~~~~~----~~~~~~-~----~~~~d~p-~a~D~ 69 (210)
T PTZ00301 2 PCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFY--YRDQSN----IPESER-A----YTNYDHP-KSLEH 69 (210)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCC--ccCccc----CCHHHh-c----CCCCCCh-hhhCH
Confidence 346999999999999999999987752 347888884 664321 112221 1 1222222 25666
Q ss_pred hhHHHHHHHHHHH--H---------hh--------cCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHH
Q 020775 104 QNFCDMASFSIES--T---------LN--------KGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLR 164 (321)
Q Consensus 104 ~~f~~~a~~~i~~--i---------~~--------~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~ 164 (321)
..|.+....+.+. + .. .....||+-|...|. ++.++..++. .+|++++.++..
T Consensus 70 ~~l~~~l~~L~~g~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~-------~~~l~~l~D~-~ifvd~~~d~~~ 141 (210)
T PTZ00301 70 DLLTTHLRELKSGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFT-------NAELRNEMDC-LIFVDTPLDICL 141 (210)
T ss_pred HHHHHHHHHHHcCCcccCCCcccccCCcCCceEEeCCCcEEEEechhhhC-------CHHHHHhCCE-EEEEeCChhHHH
Confidence 6666554322110 0 00 011233444443221 1233344454 688999999988
Q ss_pred HHHHHhH
Q 020775 165 SFVSERV 171 (321)
Q Consensus 165 ~RL~~R~ 171 (321)
.|..+|-
T Consensus 142 ~Rr~~Rd 148 (210)
T PTZ00301 142 IRRAKRD 148 (210)
T ss_pred HHHHhhh
Confidence 8877774
No 82
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.50 E-value=8.7e-07 Score=81.76 Aligned_cols=125 Identities=15% Similarity=0.070 Sum_probs=67.6
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHH
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMAS 111 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~ 111 (321)
+..|+|+||+||||||+|..||++++..+|+.|.+ +...+.-.|. .-.+.. .+.+-.....-....+...
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdl-lr~~~~~~t~--lg~~i~-------~~~~~G~lvpd~iv~~lv~ 75 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNI-LREEIKAKTT--IGKEIQ-------KVVTSGNLVPDNLVIAIVK 75 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEECChH-HHHHhhcCCh--HHHHHH-------HHHHcCCcCCHHHHHHHHH
Confidence 34599999999999999999999999999999997 3333221110 001110 0111111111122333333
Q ss_pred HHHHHH-hhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 112 FSIEST-LNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 112 ~~i~~i-~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
+.+..+ ...++.-|+.|--...-++.... .+ .-...+++|+++.+++.+|+..|.
T Consensus 76 ~~l~~~~~~~~~g~iLDGfPRt~~Qa~~l~---~~--~~~~~vi~l~~~~~~~~~Rl~~Rr 131 (229)
T PTZ00088 76 DEIAKVTDDCFKGFILDGFPRNLKQCKELG---KI--TNIDLFVNIYLPRNILIKKLLGRR 131 (229)
T ss_pred HHHHhhccccCceEEEecCCCCHHHHHHHH---hc--CCCCEEEEEeCCHHHHHHHHHcCc
Confidence 344432 12223334433212222222211 01 113468899999999999998884
No 83
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.50 E-value=9.5e-07 Score=79.39 Aligned_cols=38 Identities=18% Similarity=0.383 Sum_probs=33.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC---CEEEecCcc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP---AEIINSDKI 66 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~---~eiIsaDs~ 66 (321)
+.++.+|+|+|++|||||||+..|++.++ ..+|+.|.+
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 45788999999999999999999999984 467999986
No 84
>PRK14528 adenylate kinase; Provisional
Probab=98.49 E-value=4.1e-07 Score=80.91 Aligned_cols=39 Identities=28% Similarity=0.479 Sum_probs=34.2
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCc
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGL 72 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl 72 (321)
+.|+|+||+||||||+|..||++++..+|++|.+ +...+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~-lr~~~ 40 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDI-LREAV 40 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHH-HHHHh
Confidence 4689999999999999999999999999999987 44444
No 85
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.49 E-value=2.5e-07 Score=84.47 Aligned_cols=51 Identities=22% Similarity=0.440 Sum_probs=41.2
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCE---EEecCcceeecCccccCCCCCHHhhcCCC
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAE---IINSDKIQVYEGLDIVTNKITEEEQCGIP 88 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~e---iIsaDs~QvYkgl~I~T~k~~~~E~~gvp 88 (321)
..+|.|+|++||||||++..|+..|+.+ +|+-|+. |+... +.+.+|+..+.
T Consensus 8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~Y--Yk~~~----~~~~~~~~~~n 61 (218)
T COG0572 8 VIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDY--YKDQS----HLPFEERNKIN 61 (218)
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeecccc--ccchh----hcCHhhcCCcC
Confidence 3689999999999999999999999977 9999995 88553 34455665543
No 86
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.49 E-value=1.4e-06 Score=89.05 Aligned_cols=43 Identities=16% Similarity=0.445 Sum_probs=38.7
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCcc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLD 73 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~ 73 (321)
..++.+|+|.||+||||||+|..||++++..+++.|+| ||.+.
T Consensus 281 ~~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~--YR~~a 323 (512)
T PRK13477 281 MKRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAM--YRAVT 323 (512)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCce--ehHHH
Confidence 34678999999999999999999999999999999985 99753
No 87
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.47 E-value=1.3e-06 Score=74.94 Aligned_cols=116 Identities=17% Similarity=0.227 Sum_probs=62.5
Q ss_pred EEEEEcCCcccHHHHHHHHHhhC---C--CEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHH
Q 020775 34 VLILMGATGTGKSRLSIDMATRF---P--AEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCD 108 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l---~--~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~ 108 (321)
+|+|+|++||||||+|..|++.+ + ..+++.|.+. +.+. .. .++ ++. +..+..+
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r--~~l~---------------~~-~~~-~~~---~~~~~~~ 58 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR--HGLN---------------KD-LGF-SRE---DREENIR 58 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH--Hhhh---------------hc-cCC-Ccc---hHHHHHH
Confidence 47899999999999999999998 3 3456777641 1110 00 000 011 1112222
Q ss_pred HHHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhHHHHHh
Q 020775 109 MASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERVDRMVQ 176 (321)
Q Consensus 109 ~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml~ 176 (321)
......+.+...|.. ||+.++..+-..... . ..+....++.++|+++|.+++.+|- +.+.+..
T Consensus 59 ~~~~~a~~l~~~G~~-VIid~~~~~~~~R~~-~-~~l~~~~~~~~i~l~~~~e~~~~R~--~~~~y~~ 121 (149)
T cd02027 59 RIAEVAKLLADAGLI-VIAAFISPYREDREA-A-RKIIGGGDFLEVFVDTPLEVCEQRD--PKGLYKK 121 (149)
T ss_pred HHHHHHHHHHhCCCE-EEEccCCCCHHHHHH-H-HHhcCCCCEEEEEEeCCHHHHHHhC--chhhHHH
Confidence 222333445556654 555444322111000 0 0111246788999999999999993 4444443
No 88
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.47 E-value=2.8e-06 Score=79.12 Aligned_cols=154 Identities=20% Similarity=0.299 Sum_probs=88.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCC-EEEecCcce-eecCccccCCCCCHHhhcCCCccccc-c------cCCCc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPA-EIINSDKIQ-VYEGLDIVTNKITEEEQCGIPHHLLG-I------QHPNA 99 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~-eiIsaDs~Q-vYkgl~I~T~k~~~~E~~gvphhll~-~------~~~~~ 99 (321)
++.|.+|.|-|+||+||||+|-.||.++|. .+|+.|++- |-|++ . +++ -.|+---+ + .++..
T Consensus 86 ~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~i--i----~~~---l~PtLh~Ssy~Awkalr~~~~ 156 (299)
T COG2074 86 MKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKI--I----SPE---LLPTLHTSSYDAWKALRDPTD 156 (299)
T ss_pred cCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHh--C----CHH---hcchhhHhHHHHHHHhcCCCC
Confidence 566889999999999999999999999996 589999973 33322 1 111 11221000 0 11111
Q ss_pred -cccHhhHHHHHHH-------HHHHHhhcCCcEEEEcCchHHHHHHhccc-cccccccCCeEEEEEe-CCHHHHHHHHHH
Q 020775 100 -DFTAQNFCDMASF-------SIESTLNKGKVPIIVGGSNSYIEALVDDE-DYGFRWKYDCCFLWVD-VSMPVLRSFVSE 169 (321)
Q Consensus 100 -~~~~~~f~~~a~~-------~i~~i~~~g~~pIivGGt~~Y~~all~g~-~~~~r~~~~~~~i~L~-~~~~~L~~RL~~ 169 (321)
+--..-|.+.+.. .|+.....|...||.| .+ ++-|+ +.... ..+...++|. .+++..+.|..+
T Consensus 157 ~~piiaGF~dqa~~V~~GI~~VI~RAi~eG~~lIIEG-vH-----lVPg~i~~~~~-~~n~~~~~l~i~dee~Hr~RF~~ 229 (299)
T COG2074 157 ENPIIAGFEDQASAVMVGIEAVIERAIEEGEDLIIEG-VH-----LVPGLIKEEAL-GNNVFMFMLYIADEELHRERFYD 229 (299)
T ss_pred CcchhhhHHHHhHHHHHHHHHHHHHHHhcCcceEEEe-ee-----eccccccHhhh-ccceEEEEEEeCCHHHHHHHHHH
Confidence 1135567777653 3455556666555554 32 12221 01111 2334444444 578888899999
Q ss_pred hHHHHHhccHHHHHHHhhcCCCCCCCCccccccHHHHHHhHh
Q 020775 170 RVDRMVQNGMIDEVRKFFDPNADYSKGVRKAIGVPEFDLYFK 211 (321)
Q Consensus 170 R~~~Ml~~Gll~Ev~~l~~~~~~~~~gi~qaIGykE~~~yl~ 211 (321)
|...+-.+.-..--.+-+.. |+.+.+|+.
T Consensus 230 R~~~t~~~rp~~Ryl~yf~E-------------iR~I~Dyl~ 258 (299)
T COG2074 230 RIRYTHASRPGGRYLEYFKE-------------IRTIHDYLV 258 (299)
T ss_pred HHHHHhccCchhHHHHHHHH-------------HHHHHHHHH
Confidence 99887554433333333332 667777775
No 89
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.47 E-value=9.8e-07 Score=77.02 Aligned_cols=37 Identities=22% Similarity=0.534 Sum_probs=31.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCC-----CEEEecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFP-----AEIINSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~-----~eiIsaDs~ 66 (321)
.++.+|+|+|++||||||+|..|+..+. ..+|++|.+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 3578999999999999999999999872 456888864
No 90
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=98.46 E-value=1.1e-06 Score=80.33 Aligned_cols=33 Identities=21% Similarity=0.390 Sum_probs=28.9
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCC-------CEEEecCcc
Q 020775 34 VLILMGATGTGKSRLSIDMATRFP-------AEIINSDKI 66 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~-------~eiIsaDs~ 66 (321)
+|.|+||+||||||+|..|+..+. ..+|+.|.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 588999999999999999998873 358899996
No 91
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.45 E-value=1.8e-06 Score=77.96 Aligned_cols=130 Identities=13% Similarity=0.222 Sum_probs=68.9
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCE-EEecCcce-eecCccccCCCCCHHhhcCCC--cccccccCCCccccHhhH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAE-IINSDKIQ-VYEGLDIVTNKITEEEQCGIP--HHLLGIQHPNADFTAQNF 106 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~e-iIsaDs~Q-vYkgl~I~T~k~~~~E~~gvp--hhll~~~~~~~~~~~~~f 106 (321)
.+.+|+|+|++||||||+|..||++++.. ++++|.+. +-++. +... |.... ..- +.+++ +...+.-...|
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~-~~~~-p~l~~--s~~~a~~~~~--~~~~~~~~~~y 75 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPY-VDDE-PVLAK--SVYDAWEFYG--SMTDENIVKGY 75 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHh-cCCC-CCccc--ccHHHHHHcC--CcchhHHHHHH
Confidence 46799999999999999999999999875 67777641 11111 0000 11000 000 00111 11112234445
Q ss_pred HHHHHH-------HHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEe-CCHHHHHHHHHHhHHH
Q 020775 107 CDMASF-------SIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVD-VSMPVLRSFVSERVDR 173 (321)
Q Consensus 107 ~~~a~~-------~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~-~~~~~L~~RL~~R~~~ 173 (321)
...+.. .++.+...|. ++++-|+.++-..+ .. . ......++++. .+.+.+.+|+..|...
T Consensus 76 ~~q~~~v~~~L~~va~~~l~~G~-sVIvEgv~l~p~~~-~~---~--~~~~v~~i~l~v~d~e~lr~Rl~~R~~~ 143 (197)
T PRK12339 76 LDQARAIMPGINRVIRRALLNGE-DLVIESLYFHPPMI-DE---N--RTNNIRAFYLYIRDAELHRSRLADRINY 143 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CEEEEecCcCHHHH-HH---H--HhcCeEEEEEEeCCHHHHHHHHHHHhhc
Confidence 555432 3445666666 55555564432221 10 0 01123445554 4788999999999844
No 92
>PRK04040 adenylate kinase; Provisional
Probab=98.44 E-value=1.5e-06 Score=77.63 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=32.1
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhC--CCEEEecCcc
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRF--PAEIINSDKI 66 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l--~~eiIsaDs~ 66 (321)
+++|+|+|++||||||++..|++++ +..+++.|++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~ 38 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDV 38 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchH
Confidence 5789999999999999999999999 7889988885
No 93
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.44 E-value=1.4e-06 Score=77.90 Aligned_cols=33 Identities=33% Similarity=0.507 Sum_probs=31.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.+|+|+|+.||||||++..|++ +|..+|++|.+
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~ 35 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAI 35 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHH
Confidence 5899999999999999999998 99999999986
No 94
>PRK13808 adenylate kinase; Provisional
Probab=98.42 E-value=4.9e-07 Score=87.63 Aligned_cols=33 Identities=21% Similarity=0.465 Sum_probs=31.1
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
-|+|+||+||||||++..||+.|+..+|+.|.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdl 34 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDM 34 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecccHH
Confidence 378999999999999999999999999999886
No 95
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.42 E-value=3.9e-07 Score=82.49 Aligned_cols=36 Identities=22% Similarity=0.385 Sum_probs=32.0
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
+.+.+|+|+|++||||||++..|+. +|+.++++|.+
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i 38 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRV 38 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHH
Confidence 3456899999999999999999996 89999999954
No 96
>PRK02496 adk adenylate kinase; Provisional
Probab=98.42 E-value=8.6e-07 Score=78.02 Aligned_cols=33 Identities=27% Similarity=0.494 Sum_probs=30.8
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.|+|.||+||||||+|..||+.++..+++.|.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~ 35 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDI 35 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHH
Confidence 488999999999999999999999999999876
No 97
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.41 E-value=1.8e-06 Score=77.28 Aligned_cols=38 Identities=24% Similarity=0.457 Sum_probs=31.1
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC-----CCEEEecCcc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF-----PAEIINSDKI 66 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l-----~~eiIsaDs~ 66 (321)
..++.+|+|+|++|||||||+..|++.+ +..+++.|.+
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV 63 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence 3578899999999999999999999986 2356666654
No 98
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.40 E-value=9.9e-07 Score=77.80 Aligned_cols=103 Identities=12% Similarity=0.072 Sum_probs=59.2
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCC-ccccHhhHHHHHH
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPN-ADFTAQNFCDMAS 111 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~-~~~~~~~f~~~a~ 111 (321)
++|+|+|++|+||||++..|+ .+|..+++.-.+ .. .++++...+.. ..+.+ +.. .++
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el------------------~~-e~~~~~~~de~r~s~~v-D~d-~~~ 58 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNEL------------------AK-ENGLYTEYDELRKSVIV-DVD-KLR 58 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHH------------------HH-hcCCeeccCCccceEEe-eHH-HHH
Confidence 479999999999999999999 889887764322 11 12233323221 12211 111 122
Q ss_pred HHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 112 FSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 112 ~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
..++.+. .....|+.+-. . .+-. -.-++|.|.+++++|++||..|.
T Consensus 59 ~~le~~~-~~~~~Ivd~H~--------~----hl~~-~~dlVvVLR~~p~~L~~RLk~RG 104 (180)
T COG1936 59 KRLEELL-REGSGIVDSHL--------S----HLLP-DCDLVVVLRADPEVLYERLKGRG 104 (180)
T ss_pred HHHHHHh-ccCCeEeechh--------h----hcCC-CCCEEEEEcCCHHHHHHHHHHcC
Confidence 3344443 22334443311 1 1111 11367789999999999999995
No 99
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.40 E-value=1.4e-06 Score=78.95 Aligned_cols=33 Identities=27% Similarity=0.475 Sum_probs=30.9
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.|+|+||+||||||+|..||++++..+||++.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl 34 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDM 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCcc
Confidence 489999999999999999999999999999775
No 100
>PRK06696 uridine kinase; Validated
Probab=98.39 E-value=3.5e-07 Score=83.41 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=31.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC---CCE--EEecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF---PAE--IINSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l---~~e--iIsaDs~ 66 (321)
..+.+|+|.|++||||||||..|++.+ +.. +++.|.+
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 467899999999999999999999998 333 4569985
No 101
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.36 E-value=2.4e-06 Score=81.54 Aligned_cols=133 Identities=14% Similarity=0.164 Sum_probs=72.8
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC-------CEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP-------AEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADF 101 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~-------~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~ 101 (321)
.+.+.+|+|+||+||||||++..|+..+. ..+++.|.. |....+. +..| ++...+..+.|
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f--~~~~~~l-------~~~g----~~~~~g~P~s~ 125 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGF--LHPNQVL-------KERN----LMKKKGFPESY 125 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccc--cccHHHH-------HHcC----CccccCCChhc
Confidence 35678999999999999999988766542 457899995 4321111 1112 12222333566
Q ss_pred cHhhHHHHHHHHHHH---H------------h------hcCCcEEEEcCchHHHHHH--hccc-cccccccCCeEEEEEe
Q 020775 102 TAQNFCDMASFSIES---T------------L------NKGKVPIIVGGSNSYIEAL--VDDE-DYGFRWKYDCCFLWVD 157 (321)
Q Consensus 102 ~~~~f~~~a~~~i~~---i------------~------~~g~~pIivGGt~~Y~~al--l~g~-~~~~r~~~~~~~i~L~ 157 (321)
++..+.+........ + . -.....||+-|........ +++. ..+.+..++ ..||++
T Consensus 126 D~~~l~~~L~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D-~~IyvD 204 (290)
T TIGR00554 126 DMHRLVKFLSDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVD-FSIYVD 204 (290)
T ss_pred cHHHHHHHHHHHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCC-EEEEEE
Confidence 766666554332110 0 0 0112234455553321111 0110 011222333 578899
Q ss_pred CCHHHHHHHHHHhHHHHH
Q 020775 158 VSMPVLRSFVSERVDRMV 175 (321)
Q Consensus 158 ~~~~~L~~RL~~R~~~Ml 175 (321)
+|.+++.+|.-+|...+.
T Consensus 205 a~~d~~~~w~i~R~~~l~ 222 (290)
T TIGR00554 205 AEEDLLQTWYINRFLKFR 222 (290)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999975444
No 102
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.35 E-value=1.4e-06 Score=77.09 Aligned_cols=33 Identities=33% Similarity=0.605 Sum_probs=31.1
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
+|+|+|+.||||||++..|++..+..+|++|.+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~ 33 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKI 33 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHH
Confidence 489999999999999999999888999999987
No 103
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.34 E-value=1.9e-06 Score=79.09 Aligned_cols=128 Identities=17% Similarity=0.178 Sum_probs=87.3
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHH
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMAS 111 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~ 111 (321)
.+-++|+||.|+||+||...|-+.+++-. -=-++.+|..|..-|.+|..||+.+.-+........+|++.|.
T Consensus 37 ~~~ivl~gpsg~gk~tll~~l~ee~~~~~--------~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~ 108 (231)
T KOG0707|consen 37 FKPIVLSGPSGVGKSTLLKRLREELGGMF--------GFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFAT 108 (231)
T ss_pred CceEEEeCCCCcchhHHHHHHHHHcCCcc--------eEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhh
Confidence 37899999999999999999999998611 1123566778999999999999987766555666667777663
Q ss_pred ----------HHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEe-CCHHHHHHHHHHhHHHHH
Q 020775 112 ----------FSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVD-VSMPVLRSFVSERVDRMV 175 (321)
Q Consensus 112 ----------~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~-~~~~~L~~RL~~R~~~Ml 175 (321)
.+++++...|+..++- -.++|...--...++.+++++. ++...+.+||.+|.-.|-
T Consensus 109 ~~gn~yGtsi~av~~~~~~gk~~ild--------Id~qg~~~i~~~~~~~i~i~~~pps~~~~e~rl~~rgte~~ 175 (231)
T KOG0707|consen 109 FSGNKYGTSIAAVQRLMLSGKVCILD--------IDLQGVQPIRATSLDAIYIFIKPPSIKILEERLRARGTETE 175 (231)
T ss_pred hhcccCCchHHHHHHHHhcCCcceee--------hhhcCceeeecCCCceEEEEecCCcchhHHHHhhccCcchH
Confidence 3455555566654431 1233321111123566777765 678899999999965544
No 104
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.34 E-value=2.4e-06 Score=76.94 Aligned_cols=37 Identities=22% Similarity=0.388 Sum_probs=32.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCC---CEEEecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFP---AEIINSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~---~eiIsaDs~ 66 (321)
+++.+|+|+||+|||||||+..|+..++ ..+++.|..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~ 43 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNY 43 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccc
Confidence 4568999999999999999999999875 568888885
No 105
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.33 E-value=2.7e-06 Score=75.44 Aligned_cols=122 Identities=16% Similarity=0.223 Sum_probs=66.9
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCE--EEecCcceeecCccccCCCCCHHhhcCCCccccccc-CCCc---cccHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAE--IINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQ-HPNA---DFTAQN 105 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~e--iIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~-~~~~---~~~~~~ 105 (321)
+++|++-||+.|||||||++|...++.. .++.|++ ++.++- .+.. +..++. .++. .-....
T Consensus 1 g~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f--~~~~~~--------~~~~---~~~g~~~~~~~~~~~~~~~~ 67 (174)
T PF07931_consen 1 GQIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTF--VDMMPP--------GRYR---PGDGLEPAGDRPDGGPLFRR 67 (174)
T ss_dssp --EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHH--HHHS-G--------GGGT---STTSEEEETTSEEE-HHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChH--HhhcCc--------cccc---CCccccccccCCchhHHHHH
Confidence 3689999999999999999999999765 6788875 222210 0100 011110 0000 111223
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEc----Cc--hHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhHHHH
Q 020775 106 FCDMASFSIESTLNKGKVPIIVG----GS--NSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERVDRM 174 (321)
Q Consensus 106 f~~~a~~~i~~i~~~g~~pIivG----Gt--~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~~~M 174 (321)
+.......+....+.|...|+-+ +- .=+++.++ ..+++.++.+.||.+++.+|=..|.|+.
T Consensus 68 ~~~~~~~~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L--------~~~~vl~VgV~Cpleil~~RE~~RgDR~ 134 (174)
T PF07931_consen 68 LYAAMHAAIAAMARAGNNVIVDDVFLGPRWLQDCLRRLL--------AGLPVLFVGVRCPLEILERRERARGDRP 134 (174)
T ss_dssp HHHHHHHHHHHHHHTT-EEEEEE--TTTHHHHHHHHHHH--------TTS-EEEEEEE--HHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHhCCCCEEEecCccCcHHHHHHHHHHh--------CCCceEEEEEECCHHHHHHHHHhcCCcc
Confidence 33344456666666676555431 11 11122222 3468899999999999999999999863
No 106
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.32 E-value=3e-06 Score=75.40 Aligned_cols=38 Identities=24% Similarity=0.551 Sum_probs=31.8
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCC---CEEEecCcceeecCcc
Q 020775 34 VLILMGATGTGKSRLSIDMATRFP---AEIINSDKIQVYEGLD 73 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~---~eiIsaDs~QvYkgl~ 73 (321)
+|+|+||+|||||||+..|+..++ ..+++.|.+ |+.++
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~--~~~~~ 41 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSY--YKDLS 41 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccc--ccccc
Confidence 589999999999999999999873 578999974 65443
No 107
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.31 E-value=1e-06 Score=77.68 Aligned_cols=90 Identities=22% Similarity=0.388 Sum_probs=60.8
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhh-cCCCcccccccCCCccc-cHhhHHHHH
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQ-CGIPHHLLGIQHPNADF-TAQNFCDMA 110 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~-~gvphhll~~~~~~~~~-~~~~f~~~a 110 (321)
.+++|+||+|||||++|..++.+++..++ -|.|+++..+|+ ++++||.... + ..| ++..+.+.+
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~-----------~iat~~~~~~e~~~ri~~h~~~R--~-~~w~t~E~~~~l~ 67 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVL-----------YIATAQPFDDEMAARIAHHRQRR--P-AHWQTVEEPLDLA 67 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcE-----------eCcCCCCChHHHHHHHHHHHhcC--C-CCCeEecccccHH
Confidence 37899999999999999999999765432 277888888886 8899997654 2 234 333333332
Q ss_pred HHHHHHHhhcCCcEEEEcCchHHHHHHh
Q 020775 111 SFSIESTLNKGKVPIIVGGSNSYIEALV 138 (321)
Q Consensus 111 ~~~i~~i~~~g~~pIivGGt~~Y~~all 138 (321)
+.++...+.+. .|++.+.+.|+..++
T Consensus 68 -~~i~~~~~~~~-~VlID~Lt~~~~n~l 93 (170)
T PRK05800 68 -ELLRADAAPGR-CVLVDCLTTWVTNLL 93 (170)
T ss_pred -HHHHhhcCCCC-EEEehhHHHHHHHHh
Confidence 34444333344 677777777666554
No 108
>COG0645 Predicted kinase [General function prediction only]
Probab=98.31 E-value=7.9e-06 Score=71.85 Aligned_cols=115 Identities=22% Similarity=0.238 Sum_probs=72.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccc-cCCCccccHhhHHHHHH
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGI-QHPNADFTAQNFCDMAS 111 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~-~~~~~~~~~~~f~~~a~ 111 (321)
.++++.|-+||||||+|..|++.+++..|.+|.+ .|.| .|+|-+--+- -.+....+..-|-.+.
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~i--rk~L------------~g~p~~~r~~~g~ys~~~~~~vy~~l~- 66 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVI--RKRL------------FGVPEETRGPAGLYSPAATAAVYDELL- 66 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHH--HHHh------------cCCcccccCCCCCCcHHHHHHHHHHHH-
Confidence 5789999999999999999999999999999985 3322 2222211000 0011233344444332
Q ss_pred HHHHHHhhcCCcEEEEcCchHHHHHHhcccccccc---------ccCCeEEEEEeCCHHHHHHHHHHhHH
Q 020775 112 FSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFR---------WKYDCCFLWVDVSMPVLRSFVSERVD 172 (321)
Q Consensus 112 ~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r---------~~~~~~~i~L~~~~~~L~~RL~~R~~ 172 (321)
..-..+.+.|...|+-++- .. +..| ....+..|++.++.+++.+|+.+|..
T Consensus 67 ~~A~l~l~~G~~VVlDa~~-------~r---~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~ 126 (170)
T COG0645 67 GRAELLLSSGHSVVLDATF-------DR---PQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKG 126 (170)
T ss_pred HHHHHHHhCCCcEEEeccc-------CC---HHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCC
Confidence 2334456777755554321 11 1111 23467789999999999999999975
No 109
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.28 E-value=3.1e-06 Score=87.69 Aligned_cols=131 Identities=11% Similarity=0.141 Sum_probs=73.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCC------EEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCcccc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPA------EIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFT 102 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~------eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~ 102 (321)
.+.+.+|+|+|++||||||+|..||++++. .+++.|.+ .++++ | ...|+
T Consensus 389 ~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v--r~~l~------------g-----------e~~f~ 443 (568)
T PRK05537 389 HKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV--RKHLS------------S-----------ELGFS 443 (568)
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH--HHhcc------------C-----------CCCCC
Confidence 456779999999999999999999999975 67777764 33331 0 01122
Q ss_pred Hhh---HHHHHHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhHHHHHhccH
Q 020775 103 AQN---FCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGM 179 (321)
Q Consensus 103 ~~~---f~~~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml~~Gl 179 (321)
..+ ..+........+.+.|. .+|+..+..|-..--. ....++....+.++||+++.+++.+|+.+. ++...-
T Consensus 444 ~~er~~~~~~l~~~a~~v~~~Gg-~vI~~~~~p~~~~R~~-nr~llk~~g~fivV~L~~p~e~l~~R~rr~---Ll~~~~ 518 (568)
T PRK05537 444 KEDRDLNILRIGFVASEITKNGG-IAICAPIAPYRATRRE-VREMIEAYGGFIEVHVATPLEVCEQRDRKG---LYAKAR 518 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC-EEEEEeCCchHHHHHH-HHHHHhhcCCEEEEEEcCCHHHHHHhcccc---ccccch
Confidence 211 11111112344556665 4444444333211100 000111112356899999999999997432 343334
Q ss_pred HHHHHHhhcC
Q 020775 180 IDEVRKFFDP 189 (321)
Q Consensus 180 l~Ev~~l~~~ 189 (321)
.+++++++..
T Consensus 519 ~~~i~~l~~~ 528 (568)
T PRK05537 519 EGKIKGFTGI 528 (568)
T ss_pred hchhhccccc
Confidence 5667777654
No 110
>PLN02459 probable adenylate kinase
Probab=98.27 E-value=7e-06 Score=77.18 Aligned_cols=46 Identities=15% Similarity=0.344 Sum_probs=37.5
Q ss_pred ccccccccccccccCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 16 SSCRPRMDLLVSRRQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
|+|-...+.- ++..|+|+||+||||||+|..||+.++...|+++.+
T Consensus 18 ~~~~~~~~~~-----~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdl 63 (261)
T PLN02459 18 SACDRSLAKG-----RNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDL 63 (261)
T ss_pred ccccCCcccc-----CccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHH
Confidence 6776544332 344688899999999999999999999999998886
No 111
>PRK05439 pantothenate kinase; Provisional
Probab=98.27 E-value=8.8e-06 Score=78.35 Aligned_cols=130 Identities=13% Similarity=0.123 Sum_probs=71.9
Q ss_pred ccCCCcEEEEEcCCcccHHHHHHHHHhhCC-------CEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCcc
Q 020775 28 RRQKEKVLILMGATGTGKSRLSIDMATRFP-------AEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNAD 100 (321)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLa~~LA~~l~-------~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~ 100 (321)
....+.+|.|+|++||||||+|..|+..++ ..+|+.|.+ |..-+. +. .+.+++..+..+.
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF--y~~~~~---------l~--~~~l~~~kg~Pes 148 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF--LYPNAV---------LE--ERGLMKRKGFPES 148 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc--ccCHHH---------Hh--hhhccccCCCccc
Confidence 345678999999999999999999998553 469999996 442211 11 1123332333345
Q ss_pred ccHhhHHHHHHHHHHH---H------------h------hcCCcEEEEcCchHH-HHHHhccccccccccCCeEEEEEeC
Q 020775 101 FTAQNFCDMASFSIES---T------------L------NKGKVPIIVGGSNSY-IEALVDDEDYGFRWKYDCCFLWVDV 158 (321)
Q Consensus 101 ~~~~~f~~~a~~~i~~---i------------~------~~g~~pIivGGt~~Y-~~all~g~~~~~r~~~~~~~i~L~~ 158 (321)
|+...|.+........ + . -.....||+-|.+.+ .... + ....++..++ ..||+++
T Consensus 149 ~D~~~l~~~L~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~-~-~~~~l~d~~D-~~IfVda 225 (311)
T PRK05439 149 YDMRALLRFLSDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQN-H-HRLFVSDFFD-FSIYVDA 225 (311)
T ss_pred ccHHHHHHHHHHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCccc-c-cchhhHHhCC-EEEEEEC
Confidence 6666555443322110 0 0 001123344443321 1110 0 0001122233 5788999
Q ss_pred CHHHHHHHHHHhHHH
Q 020775 159 SMPVLRSFVSERVDR 173 (321)
Q Consensus 159 ~~~~L~~RL~~R~~~ 173 (321)
+.+++.+|.-+|.-+
T Consensus 226 ~~~~~~~w~i~R~~~ 240 (311)
T PRK05439 226 DEDLIEKWYIERFLK 240 (311)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999888754
No 112
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.26 E-value=2.5e-06 Score=74.38 Aligned_cols=105 Identities=22% Similarity=0.276 Sum_probs=57.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC-----CCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccH--
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF-----PAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTA-- 103 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l-----~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~-- 103 (321)
++.+|.|+|.+||||||||..|.+++ +..++.+|.+ ..+++ .+-.|+.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l--R~~l~-----------------------~dl~fs~~d 55 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL--RHGLN-----------------------ADLGFSKED 55 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH--CTTTT-----------------------TT--SSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch--hhccC-----------------------CCCCCCHHH
Confidence 35789999999999999999999987 3567777753 22221 1112322
Q ss_pred -hhHHHHHHHHHHHHhhcCCcEEEEcCchHHHHHHhcccccccccc---CCeEEEEEeCCHHHHHHH
Q 020775 104 -QNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWK---YDCCFLWVDVSMPVLRSF 166 (321)
Q Consensus 104 -~~f~~~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~---~~~~~i~L~~~~~~L~~R 166 (321)
.+..+.......-+.+.|. .+||-....|-+ .-+ ..|.. ..+.-+|+++|.+++.+|
T Consensus 56 R~e~~rr~~~~A~ll~~~G~-ivIva~isp~~~-~R~----~~R~~~~~~~f~eVyv~~~~e~~~~R 116 (156)
T PF01583_consen 56 REENIRRIAEVAKLLADQGI-IVIVAFISPYRE-DRE----WARELIPNERFIEVYVDCPLEVCRKR 116 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTS-EEEEE----SHH-HHH----HHHHHHHTTEEEEEEEES-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCC-eEEEeeccCchH-HHH----HHHHhCCcCceEEEEeCCCHHHHHHh
Confidence 2233333223333445555 444544433321 111 12222 247889999999999999
No 113
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=98.26 E-value=5e-06 Score=73.61 Aligned_cols=33 Identities=21% Similarity=0.476 Sum_probs=29.9
Q ss_pred EEEEEcCCcccHHHHHHHHHhhC-----CCEEEecCcc
Q 020775 34 VLILMGATGTGKSRLSIDMATRF-----PAEIINSDKI 66 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l-----~~eiIsaDs~ 66 (321)
+|+|.|++||||||||..|++.+ +..+|+.|.+
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf 38 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDY 38 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhc
Confidence 58999999999999999999986 4679999996
No 114
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.26 E-value=3.9e-06 Score=79.30 Aligned_cols=153 Identities=15% Similarity=0.227 Sum_probs=78.2
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCC-----CEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHH
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFP-----AEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFC 107 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~-----~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~ 107 (321)
++|+|+|.+||||||+|..|++.+. ..+|+-|++.+-+ . ...+.-.....+
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~-------------------~-----~y~~~~~Ek~~R 57 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDR-------------------N-----DYADSKKEKEAR 57 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TT-------------------S-----SS--GGGHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccch-------------------h-----hhhchhhhHHHH
Confidence 6899999999999999999999752 3567755542100 0 001122333444
Q ss_pred HHHHHHHHHHhhcCCcEEEEcCchHHHHHHhccccc-cccccCCeEEEEEeCCHHHHHHHHHHhHHH-HHhccHHHHHHH
Q 020775 108 DMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDY-GFRWKYDCCFLWVDVSMPVLRSFVSERVDR-MVQNGMIDEVRK 185 (321)
Q Consensus 108 ~~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~-~~r~~~~~~~i~L~~~~~~L~~RL~~R~~~-Ml~~Gll~Ev~~ 185 (321)
......++...+++ ..||+.+.+ |+++.-..... .-..+..+++++++++.+...+|=.+|.+. -+....++++..
T Consensus 58 ~~l~s~v~r~ls~~-~iVI~Dd~n-YiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~ 135 (270)
T PF08433_consen 58 GSLKSAVERALSKD-TIVILDDNN-YIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQ 135 (270)
T ss_dssp HHHHHHHHHHHTT--SEEEE-S----SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHH
T ss_pred HHHHHHHHHhhccC-eEEEEeCCc-hHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHH
Confidence 45555666666666 455666654 55554332100 001245679999999999999999988754 355666666666
Q ss_pred hhcCCCC---CCCCc------cccccHHHHHHhHh
Q 020775 186 FFDPNAD---YSKGV------RKAIGVPEFDLYFK 211 (321)
Q Consensus 186 l~~~~~~---~~~gi------~qaIGykE~~~yl~ 211 (321)
=|+.-.+ ++... -..+-+.++...+.
T Consensus 136 RfE~P~~~nrWD~plf~i~~~~~~~~~~~I~~~l~ 170 (270)
T PF08433_consen 136 RFEEPDPKNRWDSPLFTIDSSDEELPLEEIWNALF 170 (270)
T ss_dssp H---TTSS-GGGS-SEEEE-TTS---HHHHHHHHH
T ss_pred HhcCCCCCCCccCCeEEEecCCCCCCHHHHHHHHH
Confidence 6654111 11111 23445677777774
No 115
>PRK07667 uridine kinase; Provisional
Probab=98.25 E-value=1.1e-06 Score=78.49 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=31.2
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCC-----CEEEecCcc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFP-----AEIINSDKI 66 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~-----~eiIsaDs~ 66 (321)
...+|+|.|++||||||++..|++.++ ..+++.|++
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 447999999999999999999999863 458999985
No 116
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.24 E-value=9e-06 Score=71.60 Aligned_cols=111 Identities=17% Similarity=0.260 Sum_probs=62.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC-----CEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccH
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP-----AEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTA 103 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~-----~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~ 103 (321)
..++.+|+|+|++||||||++..|+..+. ..+++.|.+ .+.+. .+.. + ...-..
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~--r~~l~-----------~~~~-----~---~~~~~~ 73 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV--RHGLN-----------KDLG-----F---SEEDRK 73 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH--Hhhhc-----------cccC-----C---CHHHHH
Confidence 45778999999999999999999999862 346676664 12110 0000 0 000011
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEcCchHHHH--HHhccccccccccCCeEEEEEeCCHHHHHHH
Q 020775 104 QNFCDMASFSIESTLNKGKVPIIVGGSNSYIE--ALVDDEDYGFRWKYDCCFLWVDVSMPVLRSF 166 (321)
Q Consensus 104 ~~f~~~a~~~i~~i~~~g~~pIivGGt~~Y~~--all~g~~~~~r~~~~~~~i~L~~~~~~L~~R 166 (321)
..+ .........+...|. .||+.++..+-. ..+. .......++++||+++.+++.+|
T Consensus 74 ~~~-~~~~~~~~~~~~~G~-~VI~d~~~~~~~~r~~~~----~~~~~~~~~~v~l~~~~e~~~~R 132 (184)
T TIGR00455 74 ENI-RRIGEVAKLFVRNGI-IVITSFISPYRADRQMVR----ELIEKGEFIEVFVDCPLEVCEQR 132 (184)
T ss_pred HHH-HHHHHHHHHHHcCCC-EEEEecCCCCHHHHHHHH----HhCcCCCeEEEEEeCCHHHHHHh
Confidence 122 222233344555665 555555543211 1111 11122357789999999999988
No 117
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.23 E-value=2e-05 Score=72.11 Aligned_cols=37 Identities=24% Similarity=0.404 Sum_probs=30.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCC---C--EE-EecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFP---A--EI-INSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~---~--ei-IsaDs~ 66 (321)
.++.+++|+||+|||||||+..|+..++ + .+ |+.|..
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~ 73 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF 73 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccc
Confidence 4678999999999999999999998874 3 24 888874
No 118
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=98.21 E-value=3.7e-06 Score=74.92 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=28.2
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCC---------CEEEecCcc
Q 020775 34 VLILMGATGTGKSRLSIDMATRFP---------AEIINSDKI 66 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~---------~eiIsaDs~ 66 (321)
+|.|+||+||||||+|..|+..++ ..+++.|..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~ 42 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDF 42 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeeccc
Confidence 689999999999999999999986 246677764
No 119
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.21 E-value=4.1e-06 Score=74.26 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
++++|+|.||.||||||++..|++.++
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999874
No 120
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.20 E-value=4.4e-06 Score=76.73 Aligned_cols=39 Identities=21% Similarity=0.446 Sum_probs=35.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEG 71 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkg 71 (321)
++.+|+|.||+||||||++..||+++|..+++.|.+ ||.
T Consensus 3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~--~r~ 41 (225)
T PRK00023 3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAM--YRA 41 (225)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchh--HHH
Confidence 457999999999999999999999999999999984 664
No 121
>PLN02674 adenylate kinase
Probab=98.20 E-value=6.2e-06 Score=76.85 Aligned_cols=36 Identities=25% Similarity=0.393 Sum_probs=33.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
..+.|+|+||+||||||+|..||++++...||++.+
T Consensus 30 ~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~Gdl 65 (244)
T PLN02674 30 PDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDM 65 (244)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHH
Confidence 356789999999999999999999999999999987
No 122
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.18 E-value=5.4e-06 Score=75.38 Aligned_cols=116 Identities=20% Similarity=0.304 Sum_probs=67.7
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEE-----EecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHH
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEI-----INSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFC 107 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~ei-----IsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~ 107 (321)
++|+++|++||||||+|..||+.+.-++ +..|..-.|. -+|-.++- ++--..-|.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~----------~DEslpi~----------ke~yres~~ 61 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGIL----------WDESLPIL----------KEVYRESFL 61 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhhee----------cccccchH----------HHHHHHHHH
Confidence 5899999999999999999999885432 2222110000 00111111 111122344
Q ss_pred HHHHHHHHHHhhcCCcEEEEcCchHHHHHHhcccc-ccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 108 DMASFSIESTLNKGKVPIIVGGSNSYIEALVDDED-YGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 108 ~~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~-~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
+.+...|..... ..-|||..++|| +++-.... ........+++|++.++.+.+.+|-.+|.
T Consensus 62 ks~~rlldSalk--n~~VIvDdtNYy-ksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~erg 123 (261)
T COG4088 62 KSVERLLDSALK--NYLVIVDDTNYY-KSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNRERG 123 (261)
T ss_pred HHHHHHHHHHhc--ceEEEEecccHH-HHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhccCC
Confidence 445555655543 567888888875 33322110 00112346899999999999999976663
No 123
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.16 E-value=8.3e-06 Score=73.26 Aligned_cols=34 Identities=24% Similarity=0.313 Sum_probs=32.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
++|+|+|+.||||||++..|++.+|..+|++|.+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~ 35 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIY 35 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHH
Confidence 4799999999999999999999999999999997
No 124
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.14 E-value=1.3e-05 Score=70.62 Aligned_cols=32 Identities=31% Similarity=0.539 Sum_probs=30.2
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
+|+|+|++||||||++..|++ +|..+|++|.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~ 32 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKI 32 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHH
Confidence 489999999999999999999 89999999985
No 125
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.12 E-value=3e-05 Score=68.04 Aligned_cols=113 Identities=22% Similarity=0.326 Sum_probs=71.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCE--EEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAE--IINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCD 108 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~e--iIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~ 108 (321)
++.+|+++||+|+||-||.-....++.+. +.- +.| ++|+.-+. .+-+| +..+..+|.+
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~f-----vrR---vITRpa~a---g~EdH---------~avs~~eF~~ 63 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHF-----VRR---VITRPADA---GGEDH---------DALSEAEFNT 63 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEE-----EEE---EecccCCC---Ccccc---------cccCHHHHHH
Confidence 57899999999999999999988887643 111 122 33332211 11233 2344555665
Q ss_pred HHH------------------HHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCC-eEEEEEeCCHHHHHHHHHH
Q 020775 109 MAS------------------FSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYD-CCFLWVDVSMPVLRSFVSE 169 (321)
Q Consensus 109 ~a~------------------~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~-~~~i~L~~~~~~L~~RL~~ 169 (321)
.+. ..|++-+.+|. .+++.||--|+ ++.|.+|. ..++.+.+++++|.+||.+
T Consensus 64 ~a~~g~FAlsWqAhGL~Ygip~eId~wl~~G~-vvl~NgSRa~L--------p~arrry~~Llvv~ita~p~VLaqRL~~ 134 (192)
T COG3709 64 RAGQGAFALSWQAHGLSYGIPAEIDLWLAAGD-VVLVNGSRAVL--------PQARRRYPQLLVVCITASPEVLAQRLAE 134 (192)
T ss_pred HhhcCceeEEehhcCccccCchhHHHHHhCCC-EEEEeccHhhh--------HHHHHhhhcceeEEEecCHHHHHHHHHH
Confidence 553 23555556665 66677775443 23445554 4577799999999999999
Q ss_pred hHH
Q 020775 170 RVD 172 (321)
Q Consensus 170 R~~ 172 (321)
|..
T Consensus 135 RGR 137 (192)
T COG3709 135 RGR 137 (192)
T ss_pred hcc
Confidence 973
No 126
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.11 E-value=9.5e-06 Score=73.15 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=30.7
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.+|+|+|+.||||||++..|+. +|..+|++|.+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i 34 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQV 34 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHH
Confidence 4799999999999999999997 79999999975
No 127
>PRK14526 adenylate kinase; Provisional
Probab=98.08 E-value=1.4e-05 Score=72.78 Aligned_cols=38 Identities=18% Similarity=0.393 Sum_probs=33.0
Q ss_pred EEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCcc
Q 020775 35 LILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLD 73 (321)
Q Consensus 35 IvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~ 73 (321)
|+|+||+||||||++..||+.++..+|+++.+ +.+++.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~is~G~l-lr~~~~ 40 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHISTGDL-FRENIL 40 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeecChH-HHHhcc
Confidence 78999999999999999999999999999887 444443
No 128
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.08 E-value=4.8e-06 Score=71.01 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=28.4
Q ss_pred EEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 37 LMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 37 I~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
|+||+||||||+|..||++++..+||++.+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~l 30 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDL 30 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHH
Confidence 689999999999999999999999998876
No 129
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=98.08 E-value=3.3e-05 Score=72.78 Aligned_cols=127 Identities=14% Similarity=0.194 Sum_probs=81.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC-------CEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP-------AEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADF 101 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~-------~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~ 101 (321)
.+.+-+|+|+|+.|+||||+|..|+..+. ..+|-.|.++.+... .+ ++.+++.....+.|
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~-----------L~--~~glm~rKGfPeSy 145 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAV-----------LD--ERGLMARKGFPESY 145 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhH-----------hh--hccccccCCCCccc
Confidence 34567899999999999999999988652 578999998654422 11 34467777777899
Q ss_pred cHhhHHHHHHHHHHH----------------------HhhcCCcEEEEcCchHHHHHHhccccccc-cccCCeEEEEEeC
Q 020775 102 TAQNFCDMASFSIES----------------------TLNKGKVPIIVGGSNSYIEALVDDEDYGF-RWKYDCCFLWVDV 158 (321)
Q Consensus 102 ~~~~f~~~a~~~i~~----------------------i~~~g~~pIivGGt~~Y~~all~g~~~~~-r~~~~~~~i~L~~ 158 (321)
++..|.+.....-.. +....++ +|+-|-+ ++....++. -+.+--..||+++
T Consensus 146 D~~~ll~fl~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdI-lI~EG~n-----vLq~~~p~~~~sdffDfSIyvDa 219 (283)
T COG1072 146 DVAALLRFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDI-LIVEGNN-----VLQDGEPWLFLSDFFDFSIYVDA 219 (283)
T ss_pred cHHHHHHHHHHHhcCCCccccccccccccccCCCceeecCCCCE-EEEechh-----hhcCCCccccccccceEEEEecC
Confidence 999888766443210 0111122 2333332 222211221 1233345788999
Q ss_pred CHHHHHHHHHHhHHHH
Q 020775 159 SMPVLRSFVSERVDRM 174 (321)
Q Consensus 159 ~~~~L~~RL~~R~~~M 174 (321)
+.+.+++|+.+|.-.+
T Consensus 220 ~~~~le~wyi~Rfl~~ 235 (283)
T COG1072 220 DEELLEERYIERFLKF 235 (283)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999998443
No 130
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=98.06 E-value=1.3e-05 Score=84.46 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=36.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCcc
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLD 73 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~ 73 (321)
.++|+|.||+||||||+|+.||++++.+++++|. +||.+.
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~--~~~~~~ 481 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGA--LYRLTA 481 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHH--hhhHHH
Confidence 5689999999999999999999999999998886 598763
No 131
>PRK15453 phosphoribulokinase; Provisional
Probab=98.05 E-value=1.8e-05 Score=75.27 Aligned_cols=58 Identities=17% Similarity=0.384 Sum_probs=41.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC-----CEEEecCcceeecCccccCCCCCHHhhcCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP-----AEIINSDKIQVYEGLDIVTNKITEEEQCGI 87 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~-----~eiIsaDs~QvYkgl~I~T~k~~~~E~~gv 87 (321)
+.++++|+|+|++||||||++..|++.|+ ..+|+.|+.+-|. -.-.+.++..+++.|.
T Consensus 2 s~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~yd-r~~~~~~~~~~~r~g~ 64 (290)
T PRK15453 2 SAKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYT-RPEMKAAIAKARAAGR 64 (290)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccC-hhhHhhhhHHHHhcCC
Confidence 45789999999999999999999998774 5689999975442 1122223334555554
No 132
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.02 E-value=5e-05 Score=66.32 Aligned_cols=24 Identities=29% Similarity=0.501 Sum_probs=22.7
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
++|+|.|+.||||||++..|++.+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l 24 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERL 24 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999998
No 133
>PRK06761 hypothetical protein; Provisional
Probab=98.02 E-value=3.8e-05 Score=73.01 Aligned_cols=133 Identities=17% Similarity=0.231 Sum_probs=76.1
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHH
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMAS 111 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~ 111 (321)
+++|+|+||+||||||++..|++++....++++.. ..+. .+.+.+..+. ..++..+|...+.
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~--~~~~-----~~~p~d~~~~-----------~~~~~eer~~~l~ 64 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELY--LEGN-----LDHPADYDGV-----------ACFTKEEFDRLLS 64 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEE--ecCC-----CCCchhhccc-----------cCCCHHHHHHHHH
Confidence 57999999999999999999999997655554431 1111 0122233221 1234444444432
Q ss_pred -------HHHHHHhhcCCcEEEEcCchHHHHHHhcccccccc----ccCCeEEEEEeCCHHHHHHHHHHhHHHHHhccHH
Q 020775 112 -------FSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFR----WKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMI 180 (321)
Q Consensus 112 -------~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r----~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml~~Gll 180 (321)
..+++....|...|+. .+ ++-......++ .......++ ..|.+.+.+|+.+|.++.+++.++
T Consensus 65 ~~~~f~~~l~~~~~~~g~~~i~~-~~-----~l~~~yr~~~~~~~~~~~~v~~~h-~~p~e~i~~R~~~rw~~f~~a~l~ 137 (282)
T PRK06761 65 NYPDFKEVLLKNVLKKGDYYLLP-YR-----KIKNEFGDQFSDELFNDISKNDIY-ELPFDKNTELITDRWNDFAEIALE 137 (282)
T ss_pred hhhHHHHHHHHHHHHcCCeEEEE-eh-----hhhHHHhhhhhhhhcccceeeeee-cCCHHHHHHHHHHHHHHHHHHhhc
Confidence 2333344455433332 11 11111000111 111233444 889999999999999999998887
Q ss_pred HHHHHhhcC
Q 020775 181 DEVRKFFDP 189 (321)
Q Consensus 181 ~Ev~~l~~~ 189 (321)
+..-.+++.
T Consensus 138 ~dq~~ifE~ 146 (282)
T PRK06761 138 ENKVYIFEC 146 (282)
T ss_pred cCceEEEec
Confidence 776666664
No 134
>PRK13975 thymidylate kinase; Provisional
Probab=98.01 E-value=6.4e-05 Score=66.37 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=25.7
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCE
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAE 59 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~e 59 (321)
+++|+|.|+.||||||++..|+++++..
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4699999999999999999999999853
No 135
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=97.99 E-value=6.5e-05 Score=71.66 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEE
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEI 60 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~ei 60 (321)
..++|+|+|++||||||++..|+ ..|..+
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~ 33 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALE-DLGYYC 33 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHH-HcCCeE
Confidence 44699999999999999999997 345443
No 136
>PLN02348 phosphoribulokinase
Probab=97.99 E-value=2.4e-05 Score=77.40 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=33.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCC--------------------EEEecCcceee
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPA--------------------EIINSDKIQVY 69 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~--------------------eiIsaDs~QvY 69 (321)
+++.+|.|+|++||||||+|..|+..|+. .+|+.|..+.+
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~ 106 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSL 106 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCC
Confidence 46778999999999999999999999863 48999987543
No 137
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.98 E-value=4.7e-06 Score=74.04 Aligned_cols=33 Identities=24% Similarity=0.549 Sum_probs=31.0
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.|+|+||+||||||+|..||++++...|+.|.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHH
Confidence 589999999999999999999999999998886
No 138
>PRK07429 phosphoribulokinase; Provisional
Probab=97.95 E-value=8e-05 Score=72.26 Aligned_cols=37 Identities=22% Similarity=0.372 Sum_probs=32.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCC---CEEEecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFP---AEIINSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~---~eiIsaDs~ 66 (321)
.++.+|.|+|++||||||++..|+..++ +.+|..|.+
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~ 45 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDY 45 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccc
Confidence 4567999999999999999999999987 568899985
No 139
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.95 E-value=2e-05 Score=69.63 Aligned_cols=27 Identities=15% Similarity=0.292 Sum_probs=25.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCC
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPA 58 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~ 58 (321)
+++|+|.|+.||||||++..|+++++.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 679999999999999999999999853
No 140
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=97.95 E-value=7.6e-05 Score=65.92 Aligned_cols=28 Identities=32% Similarity=0.634 Sum_probs=24.1
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEE
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEII 61 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiI 61 (321)
+|+|.|+.||||||++..|++.++..++
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~ 28 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVV 28 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCccc
Confidence 4899999999999999999998765443
No 141
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.92 E-value=4.2e-05 Score=69.59 Aligned_cols=30 Identities=27% Similarity=0.471 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEE
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEI 60 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~ei 60 (321)
...+|+|.||-|+||||||..||++++..+
T Consensus 3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~~~ 32 (216)
T COG1428 3 VAMVIVIEGMIGAGKSTLAQALAEHLGFKV 32 (216)
T ss_pred cccEEEEecccccCHHHHHHHHHHHhCCce
Confidence 357999999999999999999999998654
No 142
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=97.92 E-value=3.1e-05 Score=69.98 Aligned_cols=38 Identities=29% Similarity=0.573 Sum_probs=34.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCC-CEEEecCcceeec
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFP-AEIINSDKIQVYE 70 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~-~eiIsaDs~QvYk 70 (321)
+--+|.|+|.|-|||||||..|.+.|+ +.+|+-|. +||
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDD--FyK 41 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDD--FYK 41 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeecccc--ccC
Confidence 446899999999999999999999995 78999999 477
No 143
>PRK14529 adenylate kinase; Provisional
Probab=97.88 E-value=4.6e-05 Score=70.11 Aligned_cols=33 Identities=21% Similarity=0.436 Sum_probs=29.3
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.|+|.||+||||||+|..||++++...||...+
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdl 34 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAI 34 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchh
Confidence 388999999999999999999999988876553
No 144
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=97.88 E-value=2.6e-05 Score=69.39 Aligned_cols=32 Identities=34% Similarity=0.545 Sum_probs=29.7
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
+|+|+|..||||||++..|++ +|+.+|++|.+
T Consensus 2 iIglTG~igsGKStv~~~l~~-~G~~vidaD~i 33 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE-LGFPVIDADEI 33 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH-CCCCEECccHH
Confidence 789999999999999999998 99999999986
No 145
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.88 E-value=7.8e-05 Score=78.18 Aligned_cols=111 Identities=16% Similarity=0.236 Sum_probs=65.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC-----CCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccH
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF-----PAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTA 103 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l-----~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~ 103 (321)
..++.+|+++|.+||||||+|..|++++ +..+++.|.+ .+++. .+.++ ..+...
T Consensus 457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~--r~~l~-----------~~~~~--------~~~~r~ 515 (632)
T PRK05506 457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNV--RHGLN-----------RDLGF--------SDADRV 515 (632)
T ss_pred CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhh--hhccC-----------CCCCC--------CHHHHH
Confidence 3468999999999999999999999996 3478999985 33332 01100 111112
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEcCchHH--HHHHhccccccccccCCeEEEEEeCCHHHHHHH
Q 020775 104 QNFCDMASFSIESTLNKGKVPIIVGGSNSY--IEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSF 166 (321)
Q Consensus 104 ~~f~~~a~~~i~~i~~~g~~pIivGGt~~Y--~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~R 166 (321)
..+.. +..........|. .|++..+..| ....+. +......++++||+++.+.+.+|
T Consensus 516 ~~~~~-l~~~a~~~~~~G~-~Vivda~~~~~~~R~~~r----~l~~~~~~~~v~L~~~~e~~~~R 574 (632)
T PRK05506 516 ENIRR-VAEVARLMADAGL-IVLVSFISPFREERELAR----ALHGEGEFVEVFVDTPLEVCEAR 574 (632)
T ss_pred HHHHH-HHHHHHHHHhCCC-EEEEECCCCCHHHHHHHH----HhcccCCeEEEEECCCHHHHHhh
Confidence 22222 2233334445564 5555444321 111111 11122356899999999999999
No 146
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.87 E-value=8.1e-05 Score=79.13 Aligned_cols=38 Identities=21% Similarity=0.411 Sum_probs=35.3
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCcc
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLD 73 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~ 73 (321)
+|+|.||+||||||+|..||+++|..++++.. +||.+.
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~--~~r~~~ 40 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGA--MYRACA 40 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeecCc--EeHHHH
Confidence 78999999999999999999999999999999 588765
No 147
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.84 E-value=0.00017 Score=65.68 Aligned_cols=31 Identities=19% Similarity=0.417 Sum_probs=27.4
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecC
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSD 64 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaD 64 (321)
+|+|-|..||||||++..|+++++.+++..+
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~ 31 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEA 31 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeecc
Confidence 5899999999999999999999987776554
No 148
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=97.83 E-value=4.4e-05 Score=75.80 Aligned_cols=33 Identities=27% Similarity=0.468 Sum_probs=30.8
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
+.|+|+|..||||||++..|++ +|+.+|++|.+
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i 34 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVL 34 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHH
Confidence 4699999999999999999997 89999999986
No 149
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.81 E-value=0.00015 Score=68.59 Aligned_cols=33 Identities=24% Similarity=0.410 Sum_probs=29.0
Q ss_pred EEEEEcCCcccHHHHHHHHHhhC---CCEEEecCcc
Q 020775 34 VLILMGATGTGKSRLSIDMATRF---PAEIINSDKI 66 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l---~~eiIsaDs~ 66 (321)
+|+|+|++|||||||+..|+..+ ++.+|+.|.+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~ 36 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDY 36 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccc
Confidence 58899999999999999999887 4568999965
No 150
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.81 E-value=2.2e-05 Score=81.29 Aligned_cols=37 Identities=19% Similarity=0.352 Sum_probs=32.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCC-CEEEecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFP-AEIINSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~-~eiIsaDs~ 66 (321)
....+|+|+||+|||||||+..|+..++ ..+|+.|..
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 3457999999999999999999999985 468999985
No 151
>PHA00729 NTP-binding motif containing protein
Probab=97.80 E-value=0.00012 Score=67.49 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=23.0
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..|+|+|++|+|||+||..||++++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999865
No 152
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.78 E-value=0.00013 Score=66.07 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=31.9
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
..+|.|+|-.||||||+|..+++ +|..+|++|..
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v 35 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDV 35 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHH
Confidence 46899999999999999999999 99999999986
No 153
>PLN02842 nucleotide kinase
Probab=97.78 E-value=7.5e-05 Score=76.13 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=28.7
Q ss_pred EEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 36 ILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 36 vI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.|.||+||||||+|..||++++..+|+++.+
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdL 31 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDL 31 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHH
Confidence 3789999999999999999999999998875
No 154
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=97.78 E-value=0.00011 Score=71.78 Aligned_cols=33 Identities=27% Similarity=0.491 Sum_probs=28.1
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCC------CEEEecCcc
Q 020775 34 VLILMGATGTGKSRLSIDMATRFP------AEIINSDKI 66 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~------~eiIsaDs~ 66 (321)
+.+++|++|+||||++..|+..+. ..+++.|..
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~ 39 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDI 39 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccc
Confidence 468999999999999999997764 348998885
No 155
>PRK13973 thymidylate kinase; Provisional
Probab=97.78 E-value=8.6e-05 Score=67.31 Aligned_cols=31 Identities=23% Similarity=0.428 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC---CCEEE
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF---PAEII 61 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l---~~eiI 61 (321)
++++|+|-|+.||||||++..|++.+ |..++
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~ 35 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVL 35 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 46899999999999999999999998 54554
No 156
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=97.77 E-value=4.7e-05 Score=68.56 Aligned_cols=32 Identities=25% Similarity=0.304 Sum_probs=29.2
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
+|+|+|+.||||||++..|++ +|..+|++|.+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i 32 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRL 32 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchH
Confidence 489999999999999998875 79999999986
No 157
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.74 E-value=2.1e-05 Score=71.73 Aligned_cols=40 Identities=18% Similarity=0.432 Sum_probs=35.9
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCcc
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLD 73 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~ 73 (321)
..+|+|=||+||||||+|+.||++||...+++-.| ||-+.
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGam--YRa~a 43 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAM--YRAVA 43 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHH--HHHHH
Confidence 37899999999999999999999999999998885 88553
No 158
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.74 E-value=2.9e-05 Score=63.24 Aligned_cols=32 Identities=31% Similarity=0.468 Sum_probs=28.1
Q ss_pred EEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 35 LILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 35 IvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
|+|.||+|+|||+++..+|+.++..++..|..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~ 32 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGS 32 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETT
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccc
Confidence 68999999999999999999999887766553
No 159
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.73 E-value=0.00016 Score=67.40 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
....+++.||+|||||++|..+|+.+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 34578999999999999999999864
No 160
>PRK09087 hypothetical protein; Validated
Probab=97.70 E-value=0.00024 Score=65.34 Aligned_cols=34 Identities=26% Similarity=0.457 Sum_probs=30.2
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCc
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDK 65 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs 65 (321)
.+.++|.||+|||||+|+..+++..++.+|+.+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~ 77 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSDALLIHPNE 77 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHH
Confidence 4679999999999999999999998888888754
No 161
>PF13173 AAA_14: AAA domain
Probab=97.68 E-value=4.2e-05 Score=63.62 Aligned_cols=37 Identities=32% Similarity=0.439 Sum_probs=31.4
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCC----CEEEecCccee
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFP----AEIINSDKIQV 68 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~----~eiIsaDs~Qv 68 (321)
.++++|.||.||||||++..+++.+. .-.||.|....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~ 42 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRD 42 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHH
Confidence 47899999999999999999998865 55788887644
No 162
>PLN02422 dephospho-CoA kinase
Probab=97.67 E-value=9.2e-05 Score=68.55 Aligned_cols=33 Identities=27% Similarity=0.406 Sum_probs=30.8
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
++|+|+|..||||||++..|+ ++|+.+|++|.+
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~ 34 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKV 34 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHH
Confidence 479999999999999999999 689999999986
No 163
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.65 E-value=5.4e-05 Score=60.56 Aligned_cols=27 Identities=26% Similarity=0.599 Sum_probs=24.6
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCC
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPA 58 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~ 58 (321)
+..++|+||+|||||+++..||..+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 468999999999999999999999864
No 164
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.59 E-value=0.00041 Score=61.77 Aligned_cols=38 Identities=24% Similarity=0.506 Sum_probs=30.8
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC-----CCEEEecCcc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF-----PAEIINSDKI 66 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l-----~~eiIsaDs~ 66 (321)
..++.+|=++|.+||||||+|.+|.+++ ...++.+|-+
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv 62 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH
Confidence 3456789999999999999999999987 2456776653
No 165
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.56 E-value=5.6e-05 Score=68.08 Aligned_cols=35 Identities=34% Similarity=0.594 Sum_probs=29.7
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCC-----CEEEecCcc
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFP-----AEIINSDKI 66 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~-----~eiIsaDs~ 66 (321)
|++|+++||||+||||.+..||.++. ..+|++|..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~ 40 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY 40 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence 67999999999999999999998762 457888863
No 166
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.56 E-value=0.00028 Score=62.39 Aligned_cols=125 Identities=14% Similarity=0.210 Sum_probs=59.9
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcce-eecCccccCCCCC-HHhhcCCCcccc-cccCC------CccccHh
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQ-VYEGLDIVTNKIT-EEEQCGIPHHLL-GIQHP------NADFTAQ 104 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~Q-vYkgl~I~T~k~~-~~E~~gvphhll-~~~~~------~~~~~~~ 104 (321)
+|.|.+..|||++++|..||+++|.++++-+-+. +-+...+...... .+|.... +.++ ++... .......
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~~ii~~~a~~~~~~~~~~~~~~e~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 79 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDREIIEEAAKESGISEEEFEEFDEKKPF-NSFLYDFFRGMFPGSFEDHPDDD 79 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-HHHHHHCT------------SS-HHH---HH---HHS--------------
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCHHHHHHHHHHccCCHHHHHHHhccccC-cchhhhhhccccccccccccHHH
Confidence 6899999999999999999999999987764431 1111111111000 0000000 0010 00000 0111122
Q ss_pred hHHHHHHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHh
Q 020775 105 NFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSER 170 (321)
Q Consensus 105 ~f~~~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R 170 (321)
.+.....+.|.++.+.| ..|++|=.+-| ++.+. -+++-|+|.+|.+.--+|+.+|
T Consensus 80 ~~~~~~~~~i~~la~~~-~~Vi~GR~a~~---il~~~-------~~~l~V~i~A~~~~Rv~ri~~~ 134 (179)
T PF13189_consen 80 KIFRAQSEIIRELAAKG-NCVIVGRCANY---ILRDI-------PNVLHVFIYAPLEFRVERIMER 134 (179)
T ss_dssp HHHHHHHHHHHHHHH----EEEESTTHHH---HTTT--------TTEEEEEEEE-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-CEEEEecCHhh---hhCCC-------CCeEEEEEECCHHHHHHHHHHH
Confidence 23333345777876565 57777655543 34432 2578889999998888888777
No 167
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=97.55 E-value=0.00057 Score=61.05 Aligned_cols=38 Identities=13% Similarity=0.406 Sum_probs=35.1
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
..++++|+|+|++||||-|.+..++++|+...+|++.+
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdL 42 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDL 42 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHH
Confidence 35789999999999999999999999999999998875
No 168
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=97.55 E-value=7.7e-05 Score=67.77 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=33.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.+.+|+|+|..||||||++..|++.+|..++++|.+
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i 40 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTI 40 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHH
Confidence 456899999999999999999999999999999986
No 169
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.55 E-value=8.6e-05 Score=55.50 Aligned_cols=23 Identities=26% Similarity=0.663 Sum_probs=21.5
Q ss_pred EEEEEcCCcccHHHHHHHHHhhC
Q 020775 34 VLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l 56 (321)
+|+|+|++||||||++..|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999996
No 170
>COG4639 Predicted kinase [General function prediction only]
Probab=97.54 E-value=0.00043 Score=60.34 Aligned_cols=113 Identities=21% Similarity=0.315 Sum_probs=65.7
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHH
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMAS 111 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~ 111 (321)
..+++++|++||||||+|...- .+.++||.|+++--.|. ..-+|.. .-+..+-.+.+.
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~r~~lg~------~~~~e~s--------------qk~~~~~~~~l~ 59 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENF--LQNYVLSLDDLRLLLGV------SASKENS--------------QKNDELVWDILY 59 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhC--CCcceecHHHHHHHhhh------chhhhhc--------------cccHHHHHHHHH
Confidence 4689999999999999998743 35789999997432221 1111110 111112333445
Q ss_pred HHHHHHhhcCCcEEEEcCchHHHH---HHhccccccccccCCeEEEEEeCCHHHHHHHHHHh
Q 020775 112 FSIESTLNKGKVPIIVGGSNSYIE---ALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSER 170 (321)
Q Consensus 112 ~~i~~i~~~g~~pIivGGt~~Y~~---all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R 170 (321)
+.++.-..+|+..|+-. |++=.+ -+++ . .-.-++...+|+++.|.+.+.+|...|
T Consensus 60 ~~l~qrl~~Gk~tiidA-tn~rr~~r~~l~~-L--a~~y~~~~~~ivfdtp~~~c~aRNk~~ 117 (168)
T COG4639 60 KQLEQRLRRGKFTIIDA-TNLRREDRRKLID-L--AKAYGYKIYAIVFDTPLELCLARNKLR 117 (168)
T ss_pred HHHHHHHHcCCeEEEEc-ccCCHHHHHHHHH-H--HHHhCCeEEEEEEeCCHHHHHHHhhcc
Confidence 55666678999877653 321000 0000 0 000135567899999999999996533
No 171
>PRK06893 DNA replication initiation factor; Validated
Probab=97.53 E-value=0.00035 Score=64.05 Aligned_cols=91 Identities=14% Similarity=0.140 Sum_probs=49.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC-----CCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhh
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF-----PAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQN 105 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l-----~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~ 105 (321)
..+.++|.||+|||||.|+.++|..+ +..+++++..+.+. -.+ .+......--++|-.+. .-...+
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~-~~~------~~~~~~~dlLilDDi~~--~~~~~~ 108 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFS-PAV------LENLEQQDLVCLDDLQA--VIGNEE 108 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhh-HHH------HhhcccCCEEEEeChhh--hcCChH
Confidence 34678999999999999999999764 45566654321100 000 01111222223332221 111223
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEcCc
Q 020775 106 FCDMASFSIESTLNKGKVPIIVGGS 130 (321)
Q Consensus 106 f~~~a~~~i~~i~~~g~~pIivGGt 130 (321)
+.......+..+.++|+..|+++++
T Consensus 109 ~~~~l~~l~n~~~~~~~~illits~ 133 (229)
T PRK06893 109 WELAIFDLFNRIKEQGKTLLLISAD 133 (229)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 4444455677777777766666554
No 172
>PRK13974 thymidylate kinase; Provisional
Probab=97.50 E-value=0.00031 Score=63.61 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.+.+|+|.|+.||||||++..|++.+.
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~ 28 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLP 28 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999999999885
No 173
>PLN02924 thymidylate kinase
Probab=97.45 E-value=0.0007 Score=62.10 Aligned_cols=29 Identities=17% Similarity=0.351 Sum_probs=26.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPA 58 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~ 58 (321)
+++++|+|-|+-||||||++..|++.+..
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~ 42 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKG 42 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46789999999999999999999999863
No 174
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=97.40 E-value=0.00014 Score=67.27 Aligned_cols=138 Identities=25% Similarity=0.364 Sum_probs=86.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCC-------C------EEEecCcceeec-CccccCCCCCHHhhcCCCccccccc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFP-------A------EIINSDKIQVYE-GLDIVTNKITEEEQCGIPHHLLGIQ 95 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~-------~------eiIsaDs~QvYk-gl~I~T~k~~~~E~~gvphhll~~~ 95 (321)
+...++.++|++||||||++.+++++.+ . .||..|.++.|+ .+|..-+.-+...++|.|.
T Consensus 117 n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapw------ 190 (323)
T KOG2702|consen 117 NNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPW------ 190 (323)
T ss_pred cchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCc------
Confidence 4567899999999999999999998542 2 357899999887 6777766655666677654
Q ss_pred CCCccccHhhHHHHHHHHHHHH------------------------hhcCCcEEEEcCchHHHHHHhccccccccccCC-
Q 020775 96 HPNADFTAQNFCDMASFSIEST------------------------LNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYD- 150 (321)
Q Consensus 96 ~~~~~~~~~~f~~~a~~~i~~i------------------------~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~- 150 (321)
.|+..-|+..++.. ..+ ....++.|+.|--- |++. ..|..-+.
T Consensus 191 ----TFD~~lfl~l~k~l-kk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYl-----Ll~~--~~Wkdi~k~ 258 (323)
T KOG2702|consen 191 ----TFDSNLFLQLCKIL-KKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYL-----LLDQ--ENWKDIYKT 258 (323)
T ss_pred ----ccCHHHHHHHHHHH-hhcCCCceeccccccccCCCCccceeecccceEEEEeccEE-----EecC--ccHHHHHHH
Confidence 46677777765432 211 11223333333221 1111 11221111
Q ss_pred -eEEEEEeCCHHHHHHHHHHhHHHHHhccHH---HHHHHhhc
Q 020775 151 -CCFLWVDVSMPVLRSFVSERVDRMVQNGMI---DEVRKFFD 188 (321)
Q Consensus 151 -~~~i~L~~~~~~L~~RL~~R~~~Ml~~Gll---~Ev~~l~~ 188 (321)
....+++++-+.-.+|+++|. +..||+ +|.++=++
T Consensus 259 ~d~k~~idV~~~~a~~RVa~RH---l~sGl~~t~~ea~er~d 297 (323)
T KOG2702|consen 259 LDDKYKIDVDYEAAEERVAKRH---LQSGLVTTIAEARERFD 297 (323)
T ss_pred hhhheeccccHHHHHHHHHHHh---hcccccCCHHHHHhhcc
Confidence 123568999999999999998 889975 44444443
No 175
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.00043 Score=63.11 Aligned_cols=133 Identities=21% Similarity=0.158 Sum_probs=76.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhh-cCCCcccccc---cCCCc--cccHh
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQ-CGIPHHLLGI---QHPNA--DFTAQ 104 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~-~gvphhll~~---~~~~~--~~~~~ 104 (321)
++.+|+|=|.=||||||++..|++.+...-+ .+ +.|.-|+-... +.+.+.+++. .++.. -+-+.
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~---~v-------~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaa 71 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGI---KV-------VLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAA 71 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCC---eE-------EEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHH
Confidence 5789999999999999999999999853321 11 23444443111 1122223332 11111 12234
Q ss_pred hHHHHHHHHHHHHhhcCCcEEEE--cCchHHHHHHhccccccc-------cc--cCCeEEEEEeCCHHHHHHHHHHhHHH
Q 020775 105 NFCDMASFSIESTLNKGKVPIIV--GGSNSYIEALVDDEDYGF-------RW--KYDCCFLWVDVSMPVLRSFVSERVDR 173 (321)
Q Consensus 105 ~f~~~a~~~i~~i~~~g~~pIiv--GGt~~Y~~all~g~~~~~-------r~--~~~~~~i~L~~~~~~L~~RL~~R~~~ 173 (321)
+..+...+.|.....+|++.|.- =.|++.++....|.+..+ .. ..+.+.|+|+++.++-.+|+.+|-..
T Consensus 72 dR~~h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~ 151 (208)
T COG0125 72 DRAQHLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGEL 151 (208)
T ss_pred HHHHHHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCCc
Confidence 44444555566666777655432 234555554444432111 11 14568899999999999999999654
No 176
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.38 E-value=0.00026 Score=62.42 Aligned_cols=90 Identities=14% Similarity=0.197 Sum_probs=56.2
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhh-cCCCcccccccCCCccccHhhHHHHHHH
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQ-CGIPHHLLGIQHPNADFTAQNFCDMASF 112 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~-~gvphhll~~~~~~~~~~~~~f~~~a~~ 112 (321)
+++|+|++|||||++|..++...+..++- +.|+++-..|+ +.|..|--. . ...|+..++.....+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~~~~y-----------~at~~~~d~em~~rI~~H~~~--R-~~~w~t~E~~~~l~~ 66 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGGPVTY-----------IATAEAFDDEMAERIARHRKR--R-PAHWRTIETPRDLVS 66 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCeEE-----------EEccCcCCHHHHHHHHHHHHh--C-CCCceEeecHHHHHH
Confidence 47899999999999999999875544332 24555544453 334444221 1 335666566555555
Q ss_pred HHHHHhhcCCcEEEEcCchHHHHHHhc
Q 020775 113 SIESTLNKGKVPIIVGGSNSYIEALVD 139 (321)
Q Consensus 113 ~i~~i~~~g~~pIivGGt~~Y~~all~ 139 (321)
.+++.. +...|++.+-+.|+..++.
T Consensus 67 ~l~~~~--~~~~VLIDclt~~~~n~l~ 91 (169)
T cd00544 67 ALKELD--PGDVVLIDCLTLWVTNLLF 91 (169)
T ss_pred HHHhcC--CCCEEEEEcHhHHHHHhCC
Confidence 554432 3447888888888777765
No 177
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.37 E-value=0.0014 Score=59.54 Aligned_cols=37 Identities=19% Similarity=0.365 Sum_probs=29.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC-----CCEEEecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF-----PAEIINSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l-----~~eiIsaDs~ 66 (321)
.....++|.||+|||||+|+..++... ...++++++.
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 345689999999999999999999875 4556666553
No 178
>PRK13976 thymidylate kinase; Provisional
Probab=97.37 E-value=0.00052 Score=62.42 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=23.1
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
++|+|-|.-||||||++..|++.|.
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~ 25 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLS 25 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999875
No 179
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=97.36 E-value=0.00015 Score=67.57 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=32.2
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.+|+|+|..||||||++..|++++|..+|++|.+
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~i 35 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLV 35 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHH
Confidence 4799999999999999999999999999999986
No 180
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.36 E-value=0.00019 Score=71.75 Aligned_cols=38 Identities=24% Similarity=0.442 Sum_probs=34.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCccee
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQV 68 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~Qv 68 (321)
.++.|++.||||||||++|+.||+.++.+++..|...+
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~ 83 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 83 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeeccee
Confidence 45789999999999999999999999999999997643
No 181
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.34 E-value=0.00022 Score=63.30 Aligned_cols=45 Identities=29% Similarity=0.402 Sum_probs=35.8
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcce-eecCccccCCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQ-VYEGLDIVTNK 78 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~Q-vYkgl~I~T~k 78 (321)
..++..++|+||+|||||||-+.+|.- ||.|+-. .++|-++.|.+
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~L-----isp~~G~l~f~Ge~vs~~~ 71 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASL-----ISPTSGTLLFEGEDVSTLK 71 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhc-----cCCCCceEEEcCccccccC
Confidence 457889999999999999999999964 6777766 45677766644
No 182
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=97.33 E-value=0.0034 Score=59.60 Aligned_cols=150 Identities=19% Similarity=0.330 Sum_probs=85.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEE--------EecCcceeecCccccCCCCCHHhhcCCCcccccc----cCC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEI--------INSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGI----QHP 97 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~ei--------IsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~----~~~ 97 (321)
...++|++-|+-|||||+||++||++++.+. |-.||. -|.+-+.- ++-+. ...+.|+ .+|
T Consensus 69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsy-g~D~r~l~-~~~p~------~cr~~di~~Fy~dP 140 (393)
T KOG3877|consen 69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSY-GNDLRNLY-NKFPA------RCRLPDISMFYKDP 140 (393)
T ss_pred ccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeeccc-Cccchhcc-ccCCc------ccCchhHHHhccCC
Confidence 4568999999999999999999999997643 333332 01111111 11110 1122222 345
Q ss_pred CccccHhhHHHHH--------HHHHHHHhhcCCcEEEEcCch---HHHHHHhccc--c-------ccccc------cCCe
Q 020775 98 NADFTAQNFCDMA--------SFSIESTLNKGKVPIIVGGSN---SYIEALVDDE--D-------YGFRW------KYDC 151 (321)
Q Consensus 98 ~~~~~~~~f~~~a--------~~~i~~i~~~g~~pIivGGt~---~Y~~all~g~--~-------~~~r~------~~~~ 151 (321)
..+.+ +.|.... ..+++.+++.|.-.|+.---. .+.+|+.+.. . .++|. -.+.
T Consensus 141 S~dls-a~~Q~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PH 219 (393)
T KOG3877|consen 141 SGDLS-AAMQDRIYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPH 219 (393)
T ss_pred CccHH-HHHHHHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCcc
Confidence 44422 2222221 346788888998777764322 2555655321 0 01111 2356
Q ss_pred EEEEEeCCHHHHHHHHHHhH--HHH--HhccHHHHHHHhhc
Q 020775 152 CFLWVDVSMPVLRSFVSERV--DRM--VQNGMIDEVRKFFD 188 (321)
Q Consensus 152 ~~i~L~~~~~~L~~RL~~R~--~~M--l~~Gll~Ev~~l~~ 188 (321)
++|+|+.|-....++|++|. ++| +..-.+..++++|+
T Consensus 220 LViYld~Pv~~v~~~Ik~rg~~~Eik~~s~aYL~diE~~YK 260 (393)
T KOG3877|consen 220 LVIYLDTPVNKVLENIKRRGNTDEIKTVSEAYLKDIEESYK 260 (393)
T ss_pred EEEEEcCCcHHHHHHHHhcCCCcceeehhHHHHHHHHHHHH
Confidence 89999999999999999995 223 23345555666654
No 183
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.32 E-value=0.00024 Score=57.58 Aligned_cols=34 Identities=32% Similarity=0.498 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC---CCEEEecC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF---PAEIINSD 64 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l---~~eiIsaD 64 (321)
....++|.||+|+|||+++..+++.+ +..++..|
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 54 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN 54 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence 46789999999999999999999987 55444443
No 184
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.30 E-value=0.00065 Score=57.25 Aligned_cols=73 Identities=21% Similarity=0.221 Sum_probs=49.5
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhH
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNF 106 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f 106 (321)
++.++|.++.+-||||+|||-++..||+.+=-.-..++- -|+++...+....-.+.+|
T Consensus 48 ~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~----------------------V~~f~~~~hFP~~~~v~~Y 105 (127)
T PF06309_consen 48 PNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPF----------------------VHQFIATHHFPHNSNVDEY 105 (127)
T ss_pred CCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCc----------------------eeeecccccCCCchHHHHH
Confidence 345678888899999999999999999984211222222 2344444444455577888
Q ss_pred HHHHHHHHHHHhhcC
Q 020775 107 CDMASFSIESTLNKG 121 (321)
Q Consensus 107 ~~~a~~~i~~i~~~g 121 (321)
.+...+.|.+..++-
T Consensus 106 k~~L~~~I~~~v~~C 120 (127)
T PF06309_consen 106 KEQLKSWIRGNVSRC 120 (127)
T ss_pred HHHHHHHHHHHHHhC
Confidence 888888777765543
No 185
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.30 E-value=0.00084 Score=61.86 Aligned_cols=126 Identities=12% Similarity=0.064 Sum_probs=66.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCC-----CEEEecCcceeecCccccCCCCCHHhhcC---CCcccccccCCCcccc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFP-----AEIINSDKIQVYEGLDIVTNKITEEEQCG---IPHHLLGIQHPNADFT 102 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~-----~eiIsaDs~QvYkgl~I~T~k~~~~E~~g---vphhll~~~~~~~~~~ 102 (321)
....++|.||+|||||.|+..++.... ..++++|...-+ ..+-+++ .+--++|.++ .++
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~----------~~~~~~~~~~~dlliiDdi~---~~~ 110 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF----------VPEVLEGMEQLSLVCIDNIE---CIA 110 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh----------hHHHHHHhhhCCEEEEeChh---hhc
Confidence 346899999999999999999998653 345665542110 0111111 1112233221 111
Q ss_pred -HhhHHHHHHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCe-EEEEEeC-CHHHHHHHHHHhH
Q 020775 103 -AQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDC-CFLWVDV-SMPVLRSFVSERV 171 (321)
Q Consensus 103 -~~~f~~~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~-~~i~L~~-~~~~L~~RL~~R~ 171 (321)
-.++.+..-..+..+.+.|+..++.-|+.-+.+. ....+.+++|+.. .++-+.+ +.+.+.+.|.++.
T Consensus 111 ~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l--~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a 180 (235)
T PRK08084 111 GDELWEMAIFDLYNRILESGRTRLLITGDRPPRQL--NLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRA 180 (235)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHc--CcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHH
Confidence 1233333345566666677766666555333221 1112345566532 4555665 4677777776555
No 186
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.29 E-value=0.00021 Score=59.72 Aligned_cols=26 Identities=31% Similarity=0.626 Sum_probs=23.9
Q ss_pred EEEEcCCcccHHHHHHHHHhhCCCEE
Q 020775 35 LILMGATGTGKSRLSIDMATRFPAEI 60 (321)
Q Consensus 35 IvI~GpTGSGKStLa~~LA~~l~~ei 60 (321)
|+|.||+|+|||+|+..+|+.++.++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~ 27 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPV 27 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcce
Confidence 78999999999999999999997664
No 187
>PRK06620 hypothetical protein; Validated
Probab=97.29 E-value=0.0015 Score=59.62 Aligned_cols=30 Identities=27% Similarity=0.293 Sum_probs=26.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEe
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIIN 62 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIs 62 (321)
+.++|.||+|||||+|+..+++..+..+++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 568999999999999999999988776655
No 188
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.26 E-value=0.00018 Score=67.95 Aligned_cols=35 Identities=17% Similarity=0.470 Sum_probs=30.2
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCC-----CEEEecCccee
Q 020775 34 VLILMGATGTGKSRLSIDMATRFP-----AEIINSDKIQV 68 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~-----~eiIsaDs~Qv 68 (321)
+|.|+|++||||||++..|++.|+ ..+|+.|+++-
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 589999999999999999998774 46899999643
No 189
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.24 E-value=0.00024 Score=71.11 Aligned_cols=35 Identities=26% Similarity=0.464 Sum_probs=32.5
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
+..|+++||||||||++|+.||+.++.+++..|..
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t 84 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 84 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecch
Confidence 57899999999999999999999999999999874
No 190
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=97.23 E-value=0.00045 Score=64.91 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=26.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.+++++++|+||+|||||||.+.|+.-+.
T Consensus 25 i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 25 IPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 56789999999999999999999998764
No 191
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.18 E-value=0.00031 Score=67.78 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=32.5
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcce
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQ 67 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~Q 67 (321)
+..|.++||||||||-||..||+.++.++-=+|.-.
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATt 132 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATT 132 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccc
Confidence 457999999999999999999999999998888753
No 192
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.18 E-value=0.0011 Score=65.74 Aligned_cols=188 Identities=14% Similarity=0.179 Sum_probs=90.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHH-hhcCCCcccccccCCCccccHhhHHHHH
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEE-EQCGIPHHLLGIQHPNADFTAQNFCDMA 110 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~-E~~gvphhll~~~~~~~~~~~~~f~~~a 110 (321)
-.-.++.||+|+||||||..||+.++.+++-.... ..|+.=.-.-.... ...+--...+=|+| .++.|.+.-
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv--~~gvkdlr~i~e~a~~~~~~gr~tiLflD-----EIHRfnK~Q 120 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV--TSGVKDLREIIEEARKNRLLGRRTILFLD-----EIHRFNKAQ 120 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc--cccHHHHHHHHHHHHHHHhcCCceEEEEe-----hhhhcChhh
Confidence 34578999999999999999999998776443321 11110000000000 00110001111222 112222222
Q ss_pred HHHHHHHhhcCCcEEEEcCchHHHHHHhccc----cccccccCCeEEEEEeC-CHHHHHHHHHHhHHHHHhccHH-----
Q 020775 111 SFSIESTLNKGKVPIIVGGSNSYIEALVDDE----DYGFRWKYDCCFLWVDV-SMPVLRSFVSERVDRMVQNGMI----- 180 (321)
Q Consensus 111 ~~~i~~i~~~g~~pIivGGt~~Y~~all~g~----~~~~r~~~~~~~i~L~~-~~~~L~~RL~~R~~~Ml~~Gll----- 180 (321)
...+-...+.| ..|++|.| .+.. ++.+++| +.++.|.+ +.+.+.+.|+ |.-.-.+.|+-
T Consensus 121 QD~lLp~vE~G-~iilIGAT-------TENPsF~ln~ALlSR--~~vf~lk~L~~~di~~~l~-ra~~~~~rgl~~~~~~ 189 (436)
T COG2256 121 QDALLPHVENG-TIILIGAT-------TENPSFELNPALLSR--ARVFELKPLSSEDIKKLLK-RALLDEERGLGGQIIV 189 (436)
T ss_pred hhhhhhhhcCC-eEEEEecc-------CCCCCeeecHHHhhh--hheeeeecCCHHHHHHHHH-HHHhhhhcCCCccccc
Confidence 22222233343 46677766 2221 1223333 45566654 7777777765 43333445554
Q ss_pred --HHHHHhhcCCCCCCCC-ccccccHHHHHHhHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 020775 181 --DEVRKFFDPNADYSKG-VRKAIGVPEFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEK 246 (321)
Q Consensus 181 --~Ev~~l~~~~~~~~~g-i~qaIGykE~~~yl~~~~~~~~~~~~~~l~~~ie~ik~~TrqyAkRQ~tW 246 (321)
+|+.+++.. .+.| +..++-+=|+.-....... . -.++..-+-+..+..+|-|.+-.+
T Consensus 190 i~~~a~~~l~~---~s~GD~R~aLN~LE~~~~~~~~~~---~---~~~~~l~~~l~~~~~~~Dk~gD~h 249 (436)
T COG2256 190 LDEEALDYLVR---LSNGDARRALNLLELAALSAEPDE---V---LILELLEEILQRRSARFDKDGDAH 249 (436)
T ss_pred CCHHHHHHHHH---hcCchHHHHHHHHHHHHHhcCCCc---c---cCHHHHHHHHhhhhhccCCCcchH
Confidence 667777653 2222 4556666666655543321 0 003344444555566666665555
No 193
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.18 E-value=0.001 Score=66.54 Aligned_cols=36 Identities=19% Similarity=0.315 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCC-----CEEEecCcc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFP-----AEIINSDKI 66 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~-----~eiIsaDs~ 66 (321)
++.+|+|+|++|||||||+..|...+. ..+|+.|.+
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDf 251 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDF 251 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCc
Confidence 567889999999999999999987662 457899985
No 194
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.15 E-value=0.0002 Score=63.44 Aligned_cols=37 Identities=24% Similarity=0.381 Sum_probs=30.3
Q ss_pred cccccccccCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 21 RMDLLVSRRQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 21 ~~~~~~~~~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++++-....+..++|+|||||||||+...|+..++
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4456665566788999999999999999999998764
No 195
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.14 E-value=0.0004 Score=61.24 Aligned_cols=34 Identities=26% Similarity=0.451 Sum_probs=28.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCC----EEEecCc
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPA----EIINSDK 65 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~----eiIsaDs 65 (321)
...+.++||||+|||.+|..||+.+.. .++..|.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~ 40 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDM 40 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEG
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhh
Confidence 357899999999999999999999885 5665554
No 196
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.13 E-value=0.0019 Score=64.15 Aligned_cols=36 Identities=36% Similarity=0.590 Sum_probs=28.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCC---------CEEEecCc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFP---------AEIINSDK 65 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~---------~eiIsaDs 65 (321)
.++.+|+++||||+||||.+..||..+. .-+|++|.
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt 216 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN 216 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC
Confidence 3567999999999999999999998652 23667764
No 197
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.13 E-value=0.0016 Score=64.38 Aligned_cols=38 Identities=29% Similarity=0.532 Sum_probs=30.8
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC----C---CEEEecCcc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF----P---AEIINSDKI 66 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l----~---~eiIsaDs~ 66 (321)
..++.+++++||||+||||++..||..+ + .-+|..|..
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 3567899999999999999999999753 3 247888874
No 198
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.12 E-value=0.00062 Score=62.87 Aligned_cols=29 Identities=21% Similarity=0.387 Sum_probs=23.7
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEE
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEI 60 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~ei 60 (321)
..-+++.||+|+||||||..+|+.++.++
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~ 78 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNF 78 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--E
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCe
Confidence 45689999999999999999999998764
No 199
>PRK05642 DNA replication initiation factor; Validated
Probab=97.11 E-value=0.0026 Score=58.63 Aligned_cols=127 Identities=14% Similarity=0.096 Sum_probs=65.2
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhC-----CCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHH
Q 020775 33 KVLILMGATGTGKSRLSIDMATRF-----PAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFC 107 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l-----~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~ 107 (321)
..++|.||+|||||.|+..++..+ .+.+++++.+.- ..-+ -.+....++.-++|-++... .-..+.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~-~~~~------~~~~~~~~d~LiiDDi~~~~--~~~~~~ 116 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLD-RGPE------LLDNLEQYELVCLDDLDVIA--GKADWE 116 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHh-hhHH------HHHhhhhCCEEEEechhhhc--CChHHH
Confidence 578999999999999999987543 345666665421 0000 01112223333343332111 112344
Q ss_pred HHHHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCe-EEEEEeC-CHHHHHHHHHHhH
Q 020775 108 DMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDC-CFLWVDV-SMPVLRSFVSERV 171 (321)
Q Consensus 108 ~~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~-~~i~L~~-~~~~L~~RL~~R~ 171 (321)
+....++..+..+|+ +++.+++.-- .-+....+.+++|+.. .++-+.+ +.+.+.+-+..|.
T Consensus 117 ~~Lf~l~n~~~~~g~-~ilits~~~p--~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 117 EALFHLFNRLRDSGR-RLLLAASKSP--RELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred HHHHHHHHHHHhcCC-EEEEeCCCCH--HHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 445556777776776 5566554210 1111112345555543 3444666 6666666666554
No 200
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=97.09 E-value=0.00028 Score=76.41 Aligned_cols=40 Identities=28% Similarity=0.517 Sum_probs=36.6
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCcc
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLD 73 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~ 73 (321)
..+|+|.||+||||||+|..||++++..+|+.|.| ||.+.
T Consensus 34 ~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~--yRa~a 73 (863)
T PRK12269 34 TVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSF--YRAFT 73 (863)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHH--HHHHH
Confidence 36899999999999999999999999999999996 88664
No 201
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0016 Score=62.98 Aligned_cols=30 Identities=27% Similarity=0.545 Sum_probs=26.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCE
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAE 59 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~e 59 (321)
.-+++|.+.||+|+|||+|+++||+++...
T Consensus 175 t~NRliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 175 TWNRLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eeeeEEEEeCCCCCChhHHHHHHHHhheee
Confidence 346899999999999999999999998644
No 202
>PRK07933 thymidylate kinase; Validated
Probab=97.07 E-value=0.0035 Score=56.99 Aligned_cols=25 Identities=20% Similarity=0.437 Sum_probs=23.2
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
++|+|-|+-||||||++..|++.+.
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~ 25 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALE 25 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999985
No 203
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.05 E-value=0.00052 Score=59.06 Aligned_cols=26 Identities=27% Similarity=0.525 Sum_probs=21.2
Q ss_pred EEEEcCCcccHHHHHHHHHhhCCCEEE
Q 020775 35 LILMGATGTGKSRLSIDMATRFPAEII 61 (321)
Q Consensus 35 IvI~GpTGSGKStLa~~LA~~l~~eiI 61 (321)
|+|+|+.|||||||+..|+++ |..++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 799999999999999999999 77766
No 204
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.04 E-value=0.00063 Score=55.73 Aligned_cols=24 Identities=21% Similarity=0.533 Sum_probs=21.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHH
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMA 53 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA 53 (321)
.....++|.||+|||||||+..+.
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 456899999999999999999987
No 205
>PLN02796 D-glycerate 3-kinase
Probab=97.02 E-value=0.0007 Score=66.13 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=31.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCC-----CEEEecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFP-----AEIINSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~-----~eiIsaDs~ 66 (321)
.++.+|+|+||+|||||||+..|+..+. ...|+.|..
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf 139 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDF 139 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence 3567899999999999999999998874 357888885
No 206
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.99 E-value=0.00055 Score=62.82 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=23.8
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHh
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMAT 54 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~ 54 (321)
..++.+++|+||+|||||||.+.|..
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 56889999999999999999999874
No 207
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.99 E-value=0.0011 Score=60.65 Aligned_cols=131 Identities=11% Similarity=0.088 Sum_probs=62.8
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhC-----CCE--EEecCcceeecCc-cccCCCCC---HHhhcCCCcccccccCCCccc
Q 020775 33 KVLILMGATGTGKSRLSIDMATRF-----PAE--IINSDKIQVYEGL-DIVTNKIT---EEEQCGIPHHLLGIQHPNADF 101 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l-----~~e--iIsaDs~QvYkgl-~I~T~k~~---~~E~~gvphhll~~~~~~~~~ 101 (321)
..++|.||+|+|||-|..+++..+ +.. .++++. +.+.+ +...+... .++....+--++|-++ .--
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~--f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~--~l~ 110 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEE--FIREFADALRDGEIEEFKDRLRSADLLIIDDIQ--FLA 110 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHH--HHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGG--GGT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHH--HHHHHHHHHHcccchhhhhhhhcCCEEEEecch--hhc
Confidence 357899999999999999998653 233 444433 22211 10000000 1122333333333222 222
Q ss_pred cHhhHHHHHHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCC-eEEEEEeCCHHHHHHHHHHh
Q 020775 102 TAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYD-CCFLWVDVSMPVLRSFVSER 170 (321)
Q Consensus 102 ~~~~f~~~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~-~~~i~L~~~~~~L~~RL~~R 170 (321)
+...+.+..-..++.+..+|+..|+.+...- .-+.+..+.+++|+. ...+.+..+.+..+.++-++
T Consensus 111 ~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P---~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~ 177 (219)
T PF00308_consen 111 GKQRTQEELFHLFNRLIESGKQLILTSDRPP---SELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQK 177 (219)
T ss_dssp THHHHHHHHHHHHHHHHHTTSEEEEEESS-T---TTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHhhCCeEEEEeCCCC---ccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHH
Confidence 2334556666778888888886666654311 011222234444443 34566776665555555433
No 208
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.99 E-value=0.00051 Score=67.41 Aligned_cols=28 Identities=29% Similarity=0.528 Sum_probs=25.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.+.+++.|+||+||||||||..||+.++
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3568999999999999999999999985
No 209
>PTZ00202 tuzin; Provisional
Probab=96.98 E-value=0.0019 Score=65.18 Aligned_cols=80 Identities=16% Similarity=0.246 Sum_probs=48.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhh-cCCCcccccccCCCccccHhhHHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQ-CGIPHHLLGIQHPNADFTAQNFCDM 109 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~-~gvphhll~~~~~~~~~~~~~f~~~ 109 (321)
-+.+++|+|++|+|||||++.++..++-. |+|-... + .+|. .. ++..+.....+.-.+..+.
T Consensus 285 ~privvLtG~~G~GKTTLlR~~~~~l~~~-------qL~vNpr-g-----~eElLr~----LL~ALGV~p~~~k~dLLrq 347 (550)
T PTZ00202 285 HPRIVVFTGFRGCGKSSLCRSAVRKEGMP-------AVFVDVR-G-----TEDTLRS----VVKALGVPNVEACGDLLDF 347 (550)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcCCce-------EEEECCC-C-----HHHHHHH----HHHHcCCCCcccHHHHHHH
Confidence 45699999999999999999999887722 4555443 1 2332 11 2222222233343444444
Q ss_pred HHHHHHHHhhc-CCcEEEE
Q 020775 110 ASFSIESTLNK-GKVPIIV 127 (321)
Q Consensus 110 a~~~i~~i~~~-g~~pIiv 127 (321)
..+.+.+.... |+.||++
T Consensus 348 IqeaLl~~~~e~GrtPVLI 366 (550)
T PTZ00202 348 ISEACRRAKKMNGETPLLV 366 (550)
T ss_pred HHHHHHHHHHhCCCCEEEE
Confidence 44455554444 8888876
No 210
>CHL00181 cbbX CbbX; Provisional
Probab=96.96 E-value=0.0035 Score=59.72 Aligned_cols=26 Identities=27% Similarity=0.480 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.+..+++.||+|||||++|+.+|+.+
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999999864
No 211
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.0063 Score=62.00 Aligned_cols=28 Identities=29% Similarity=0.534 Sum_probs=25.4
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCE
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAE 59 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~e 59 (321)
+..++++||.|+||||+|+.+|+.++++
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4568999999999999999999999874
No 212
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.96 E-value=0.00061 Score=59.01 Aligned_cols=39 Identities=23% Similarity=0.501 Sum_probs=32.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeec
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYE 70 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYk 70 (321)
.+.-++|+||+|+||||+|.+|.++ +..+|+=|...+.+
T Consensus 13 ~g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD~v~v~~ 51 (149)
T cd01918 13 GGIGVLITGPSGIGKSELALELIKR-GHRLVADDRVVVKR 51 (149)
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECCEEEEEE
Confidence 3567999999999999999999976 67888877766665
No 213
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=96.96 E-value=0.0049 Score=61.04 Aligned_cols=110 Identities=20% Similarity=0.236 Sum_probs=70.1
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC-----CEEEecCcceeec------CccccCCCCC-HHhhcCCCcccccccC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP-----AEIINSDKIQVYE------GLDIVTNKIT-EEEQCGIPHHLLGIQH 96 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~-----~eiIsaDs~QvYk------gl~I~T~k~~-~~E~~gvphhll~~~~ 96 (321)
.....+++|+||..||||||+.-||.++. ..||++|--|-== .+...++.+. .+|..-..+.|++-..
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~FvG~is 149 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTLYFVGSIS 149 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEeecccCCCCCHHHcCccceEEEeccC
Confidence 34677999999999999999999999874 5799999877321 2222233333 6666666667777766
Q ss_pred CCccccHhhHHHHHHHHHHHHhhcCCcEEE------Ec-CchHHHHHHhcc
Q 020775 97 PNADFTAQNFCDMASFSIESTLNKGKVPII------VG-GSNSYIEALVDD 140 (321)
Q Consensus 97 ~~~~~~~~~f~~~a~~~i~~i~~~g~~pIi------vG-Gt~~Y~~all~g 140 (321)
|...+ ..+..-+.++++...+.....|| .| +..-|..++++.
T Consensus 150 P~~~~--~~~i~~v~rL~~~a~~~~~~ilIdT~GWi~G~~g~elk~~li~~ 198 (398)
T COG1341 150 PQGFP--GRYIAGVARLVDLAKKEADFILIDTDGWIKGWGGLELKRALIDA 198 (398)
T ss_pred CCCCh--HHHHHHHHHHHHHhhccCCEEEEcCCCceeCchHHHHHHHHHhh
Confidence 66544 45666666666666555333332 35 333355555554
No 214
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.94 E-value=0.00061 Score=61.11 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.9
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCC
Q 020775 34 VLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
+|+|+|||||||||+...|+..++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 789999999999999999888764
No 215
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.94 E-value=0.00067 Score=67.88 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=30.7
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
...++|.||||||||++|+.||+.++.+++..|.-
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~ 142 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADAT 142 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 35689999999999999999999999888777764
No 216
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.90 E-value=0.00067 Score=55.46 Aligned_cols=27 Identities=30% Similarity=0.658 Sum_probs=20.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
+...+++|.||+|+|||+++..+++.+
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999986
No 217
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.85 E-value=0.0011 Score=56.32 Aligned_cols=37 Identities=22% Similarity=0.309 Sum_probs=30.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCE-EEecCc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAE-IINSDK 65 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~e-iIsaDs 65 (321)
.+.+.+|++.|+.|+||||+++.+++.++.. .|++-.
T Consensus 19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~~~v~SPT 56 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQGNVTSPT 56 (133)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCCcccCCC
Confidence 3567899999999999999999999999853 444444
No 218
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.85 E-value=0.00076 Score=55.87 Aligned_cols=29 Identities=28% Similarity=0.526 Sum_probs=25.7
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+|++|||||||...|+....
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred EcCCCEEEEEccCCCccccceeeeccccc
Confidence 35678999999999999999999998764
No 219
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.84 E-value=0.0044 Score=59.22 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=31.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC-----CCEEEecCcc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF-----PAEIINSDKI 66 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l-----~~eiIsaDs~ 66 (321)
...+.+|+|+||+|||||||...|+..+ ...+|+.|.-
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 4567899999999999999999988764 3568888853
No 220
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.84 E-value=0.0057 Score=59.99 Aligned_cols=29 Identities=21% Similarity=0.395 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCE
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAE 59 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~e 59 (321)
-+..+++.||+|+||||+|+.+|+.++++
T Consensus 37 ~~h~~L~~Gp~G~GKTtla~~la~~l~c~ 65 (363)
T PRK14961 37 IHHAWLLSGTRGVGKTTIARLLAKSLNCQ 65 (363)
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence 35678999999999999999999998753
No 221
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.83 E-value=0.0061 Score=63.75 Aligned_cols=146 Identities=12% Similarity=0.100 Sum_probs=68.6
Q ss_pred EEEEEcCCcccHHHHHHHHHhhC-----CC--EEEecCcce--eecCccccCCCCCHHhh----cCCCcccccccCCCcc
Q 020775 34 VLILMGATGTGKSRLSIDMATRF-----PA--EIINSDKIQ--VYEGLDIVTNKITEEEQ----CGIPHHLLGIQHPNAD 100 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l-----~~--eiIsaDs~Q--vYkgl~I~T~k~~~~E~----~gvphhll~~~~~~~~ 100 (321)
.++|.|++|+|||-|+.+++..+ +. .+++++.+. +...+ ..+ ..++. ..+.--++|-++...
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al--~~~--~~~~f~~~y~~~DLLlIDDIq~l~- 390 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSI--RDG--KGDSFRRRYREMDILLVDDIQFLE- 390 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHH--Hhc--cHHHHHHHhhcCCEEEEehhcccc-
Confidence 48999999999999999999864 22 355554431 00010 000 01111 122222333322211
Q ss_pred ccHhhHHHHHHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCe-EEEEEeCCHHHHHHHH-HHhHHHHHhcc
Q 020775 101 FTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDC-CFLWVDVSMPVLRSFV-SERVDRMVQNG 178 (321)
Q Consensus 101 ~~~~~f~~~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~-~~i~L~~~~~~L~~RL-~~R~~~Ml~~G 178 (321)
......+....+++.+.++|+..|+++-.. .+.+ .+....++.|+.. +++.|..+..+.+..| .++... ..--
T Consensus 391 -gke~tqeeLF~l~N~l~e~gk~IIITSd~~--P~eL-~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~-r~l~ 465 (617)
T PRK14086 391 -DKESTQEEFFHTFNTLHNANKQIVLSSDRP--PKQL-VTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQ-EQLN 465 (617)
T ss_pred -CCHHHHHHHHHHHHHHHhcCCCEEEecCCC--hHhh-hhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHh-cCCC
Confidence 111222333456777777777555543321 1111 2223345566654 4555766554444433 333211 1122
Q ss_pred HHHHHHHhhcC
Q 020775 179 MIDEVRKFFDP 189 (321)
Q Consensus 179 ll~Ev~~l~~~ 189 (321)
+-+|+.+++..
T Consensus 466 l~~eVi~yLa~ 476 (617)
T PRK14086 466 APPEVLEFIAS 476 (617)
T ss_pred CCHHHHHHHHH
Confidence 44677666654
No 222
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.83 E-value=0.0011 Score=64.21 Aligned_cols=36 Identities=22% Similarity=0.431 Sum_probs=29.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC---C--CEEEecCc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF---P--AEIINSDK 65 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l---~--~eiIsaDs 65 (321)
.++.+++++||+|+||||++..||..+ + .-++.+|.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 357899999999999999999999876 2 23566665
No 223
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.82 E-value=0.0013 Score=48.78 Aligned_cols=25 Identities=32% Similarity=0.490 Sum_probs=20.9
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
+.+.+|+||+|||||||.-++.--+
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999988776543
No 224
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.82 E-value=0.001 Score=65.92 Aligned_cols=35 Identities=34% Similarity=0.653 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCC-------CEEEecCc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFP-------AEIINSDK 65 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~-------~eiIsaDs 65 (321)
++++|+++||||+||||....||-+|. .-||..|.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDt 243 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDT 243 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEecc
Confidence 488999999999999999999988874 45899887
No 225
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.81 E-value=0.00095 Score=61.60 Aligned_cols=27 Identities=22% Similarity=0.350 Sum_probs=24.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
.+++.+++|+||+|||||||-..|+.-
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~l 54 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGGL 54 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 578899999999999999999988854
No 226
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.81 E-value=0.0011 Score=66.33 Aligned_cols=33 Identities=27% Similarity=0.465 Sum_probs=28.8
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCc
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDK 65 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs 65 (321)
..|+|.||||||||++|+.||+.++.+++..|.
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da 149 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAIADA 149 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEEech
Confidence 579999999999999999999999887765554
No 227
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.81 E-value=0.00095 Score=64.93 Aligned_cols=36 Identities=25% Similarity=0.437 Sum_probs=31.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDK 65 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs 65 (321)
-.|+.|..+||||+|||.+|+.||+-.++++|-...
T Consensus 48 V~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEA 83 (444)
T COG1220 48 VTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEA 83 (444)
T ss_pred cCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEe
Confidence 368899999999999999999999999888776543
No 228
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.80 E-value=0.0012 Score=65.89 Aligned_cols=35 Identities=31% Similarity=0.524 Sum_probs=28.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCC-----CEEEecCc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFP-----AEIINSDK 65 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~-----~eiIsaDs 65 (321)
++.+|+|+||||+||||++..||..+. .-+|++|.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt 279 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDH 279 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 467999999999999999999997652 34677775
No 229
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.80 E-value=0.0017 Score=59.63 Aligned_cols=53 Identities=26% Similarity=0.347 Sum_probs=35.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC---CEEEecCcceeecCccccCCCCCHHh
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP---AEIINSDKIQVYEGLDIVTNKITEEE 83 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~---~eiIsaDs~QvYkgl~I~T~k~~~~E 83 (321)
.++.++-+++||+||||||+.+.|-+-.. +.-+.+. -.|.|.+|-..+....+
T Consensus 30 i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~--v~~~g~ni~~~~~d~~~ 85 (253)
T COG1117 30 IPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGE--VLLDGKNIYDPKVDVVE 85 (253)
T ss_pred ccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEE--EEECCeeccCCCCCHHH
Confidence 56889999999999999999999986542 1111111 14667666655544444
No 230
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.79 E-value=0.00091 Score=63.45 Aligned_cols=36 Identities=33% Similarity=0.605 Sum_probs=29.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC----C---CEEEecCc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF----P---AEIINSDK 65 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l----~---~eiIsaDs 65 (321)
.++.+|+|+|||||||||++..||..+ + .-+|++|.
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 457799999999999999999998765 2 24788886
No 231
>PHA02624 large T antigen; Provisional
Probab=96.79 E-value=0.0012 Score=68.77 Aligned_cols=37 Identities=16% Similarity=0.295 Sum_probs=33.8
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEec
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATRFPAEIINS 63 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsa 63 (321)
.+.++...++|.||.|||||+++..|++.++|.++|.
T Consensus 426 ~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV 462 (647)
T PHA02624 426 ENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV 462 (647)
T ss_pred hcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence 5567888999999999999999999999999988885
No 232
>PRK08727 hypothetical protein; Validated
Probab=96.78 E-value=0.0064 Score=55.94 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=21.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
...++|.||+|||||.|+.+++..
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~ 64 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAA 64 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999998765
No 233
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.77 E-value=0.0012 Score=64.97 Aligned_cols=40 Identities=20% Similarity=0.521 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCC--CEEEecCcceeec
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFP--AEIINSDKIQVYE 70 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~--~eiIsaDs~QvYk 70 (321)
.++.|.|+||+|||||+||..+|+.+| .++++...-.+|.
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS 90 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS 90 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence 478999999999999999999999997 4554443333444
No 234
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.77 E-value=0.0012 Score=62.35 Aligned_cols=36 Identities=22% Similarity=0.476 Sum_probs=28.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC---C--CEEEecCc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF---P--AEIINSDK 65 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l---~--~eiIsaDs 65 (321)
.++++|+++||+|+||||++..||..+ + .-+|.+|.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 456899999999999999999999776 2 23566664
No 235
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.77 E-value=0.0043 Score=60.43 Aligned_cols=52 Identities=17% Similarity=0.261 Sum_probs=38.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC-----CCEEEecCcceeecCccccCCCCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF-----PAEIINSDKIQVYEGLDIVTNKIT 80 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l-----~~eiIsaDs~QvYkgl~I~T~k~~ 80 (321)
..++.+|.|+||+|||||||...|+..+ ...+|+.|--..+.|-.+.-.+.+
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r 109 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTR 109 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhH
Confidence 3567899999999999999999887765 356889887666655555443333
No 236
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.76 E-value=0.0028 Score=60.88 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.+.-+|.|+|||||||||...++-..+|
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN 150 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYIN 150 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHh
Confidence 3456999999999999998877776654
No 237
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.76 E-value=0.01 Score=56.25 Aligned_cols=35 Identities=20% Similarity=0.365 Sum_probs=30.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDK 65 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs 65 (321)
.|+.|.+.||||+|||-+|++||...+.+++..-+
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp~l~vka 184 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKA 184 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCCceEEech
Confidence 47899999999999999999999999888776544
No 238
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.73 E-value=0.0023 Score=56.20 Aligned_cols=35 Identities=29% Similarity=0.547 Sum_probs=26.7
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh-CC-CEEEecCcc
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR-FP-AEIINSDKI 66 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~-l~-~eiIsaDs~ 66 (321)
+++.++.||+||||||+...+--. ++ ..+||+|.|
T Consensus 2 ~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~i 38 (187)
T COG4185 2 KRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEI 38 (187)
T ss_pred ceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHH
Confidence 567889999999999986544333 33 468999986
No 239
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.73 E-value=0.0013 Score=61.47 Aligned_cols=31 Identities=26% Similarity=0.432 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEE
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEII 61 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiI 61 (321)
.+..+.|.||+|||||++|..||+.++.+++
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 4556789999999999999999999886654
No 240
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.72 E-value=0.0013 Score=65.50 Aligned_cols=29 Identities=24% Similarity=0.425 Sum_probs=26.3
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEE
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEI 60 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~ei 60 (321)
.+.|+|+|++|||||||+..||+++|...
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~ 247 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTS 247 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCe
Confidence 57899999999999999999999998654
No 241
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.72 E-value=0.0014 Score=64.98 Aligned_cols=36 Identities=31% Similarity=0.375 Sum_probs=30.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDK 65 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs 65 (321)
..++-|++.||+|||||++|+.+|..++..++..+.
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~ 198 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG 198 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeeh
Confidence 456779999999999999999999999877665443
No 242
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.71 E-value=0.014 Score=61.70 Aligned_cols=33 Identities=30% Similarity=0.521 Sum_probs=29.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEE
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEII 61 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiI 61 (321)
.+..++..++||+|-||||||.-+|++-|..++
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaGYsVv 355 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVV 355 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcCceEE
Confidence 456789999999999999999999999987654
No 243
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=96.71 E-value=0.002 Score=59.53 Aligned_cols=54 Identities=24% Similarity=0.429 Sum_probs=43.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC---CEEEecCcceeecCccccCCCCCHHhhcCCCc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP---AEIINSDKIQVYEGLDIVTNKITEEEQCGIPH 89 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~---~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvph 89 (321)
.+++.+++++||+|+||||+.+.|+.... |+| .|.|-||+.-+|..--+.|+-|
T Consensus 26 v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I-------~~~G~dit~~p~~~r~r~Gi~~ 82 (237)
T COG0410 26 VERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI-------IFDGEDITGLPPHERARLGIAY 82 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeE-------EECCeecCCCCHHHHHhCCeEe
Confidence 56789999999999999999999998764 444 5778998877766666677655
No 244
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.71 E-value=0.005 Score=56.77 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=25.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 27 FPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 5678999999999999999999999864
No 245
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.71 E-value=0.00088 Score=65.51 Aligned_cols=34 Identities=26% Similarity=0.474 Sum_probs=28.1
Q ss_pred ccccccCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 24 LLVSRRQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 24 ~~~~~~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
++.......+.|+|+|||||||||+...|+..++
T Consensus 154 ~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 154 FLHACVVGRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred HHHHHHHcCCeEEEECCCCccHHHHHHHHHcccC
Confidence 3333455678999999999999999999998875
No 246
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.69 E-value=0.0014 Score=64.78 Aligned_cols=44 Identities=18% Similarity=0.105 Sum_probs=37.0
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeec
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYE 70 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYk 70 (321)
.+.+.|..+.|.||+|+|||.+|.++|+.+++++|..+.-.++.
T Consensus 143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~s 186 (413)
T PLN00020 143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELES 186 (413)
T ss_pred cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhc
Confidence 34567889999999999999999999999999988777654443
No 247
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=96.69 E-value=0.0015 Score=58.02 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.+++++.|+|++|||||||+..|...+.
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHh
Confidence 3567999999999999999999998764
No 248
>PRK10867 signal recognition particle protein; Provisional
Probab=96.68 E-value=0.0072 Score=60.91 Aligned_cols=36 Identities=19% Similarity=0.418 Sum_probs=29.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC----C--CEEEecCc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF----P--AEIINSDK 65 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l----~--~eiIsaDs 65 (321)
.++.+|+++||+||||||++..||..+ + .-+|++|.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~ 139 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADV 139 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccc
Confidence 357899999999999999888888754 2 35899996
No 249
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.0045 Score=59.65 Aligned_cols=57 Identities=30% Similarity=0.527 Sum_probs=42.9
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC---CEEEecCcceeecCccccCCCCCHHhhcCCCc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP---AEIINSDKIQVYEGLDIVTNKITEEEQCGIPH 89 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~---~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvph 89 (321)
..++.++.|+|-+|||||+++..+..-++ +.+++. ++ .|+|-++.+-. .+++..+.-
T Consensus 28 i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G-~i-~f~g~~l~~l~--~~~~~~iRG 87 (316)
T COG0444 28 LKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGG-EI-LFDGKDLLSLS--EKELRKIRG 87 (316)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeee-EE-EECCcccccCC--HHHHHhhcC
Confidence 56789999999999999999999999886 445554 55 79999876643 445433333
No 250
>PRK09169 hypothetical protein; Validated
Probab=96.68 E-value=0.0033 Score=72.77 Aligned_cols=116 Identities=9% Similarity=-0.059 Sum_probs=76.1
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHH
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMAS 111 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~ 111 (321)
...|+++|..|+||||+++.||+++++.++..|.. .++..|..---+ ..... .|++.+.
T Consensus 2110 ~~aIvLIG~MGaGKTTIGr~LA~~Lg~~FiDtD~k--------------Ieks~GrkI~rI-----Fa~eG--~FRe~Ea 2168 (2316)
T PRK09169 2110 AQARRIEREVGPLLQALLQKLAGGLRVDKPHSVRK--------------IAKKIGKKIARI-----QALRG--LSPEQAA 2168 (2316)
T ss_pred hcccceeeCCCCCHhHHHHHHHHHhCCCccccHHH--------------HHHHhCCCHHHH-----HHhcC--chHHHHH
Confidence 45789999999999999999999999999988874 222222211000 01111 6899998
Q ss_pred HHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhHHHHH
Q 020775 112 FSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERVDRMV 175 (321)
Q Consensus 112 ~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml 175 (321)
..+.++.. ....|-.||.......... .+ .-...+||+..+.+.+.+|+.+..+..+
T Consensus 2169 a~V~Dllr-~~vVLSTGGGav~~~enr~----~L--~~~GlvV~L~an~~tl~~Rty~g~NRPL 2225 (2316)
T PRK09169 2169 ARVRDALR-WEVVLPAEGFGAAVEQARQ----AL--GAKGLRVMRINNGFAAPDTTYAGLNVNL 2225 (2316)
T ss_pred HHHHHHhc-CCeEEeCCCCcccCHHHHH----HH--HHCCEEEEEECCHHHHHHHhccCCCCcc
Confidence 99988874 4444444665433222221 11 1234699999999999999987655433
No 251
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.67 E-value=0.002 Score=55.84 Aligned_cols=32 Identities=25% Similarity=0.506 Sum_probs=26.8
Q ss_pred EEEEEcCCcccHHHHHHHHHhhC---C--CEEEecCc
Q 020775 34 VLILMGATGTGKSRLSIDMATRF---P--AEIINSDK 65 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l---~--~eiIsaDs 65 (321)
++++.||+||||||++..+|..+ + .-+|++|.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 68899999999999999998875 2 34688886
No 252
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.66 E-value=0.002 Score=63.05 Aligned_cols=36 Identities=31% Similarity=0.375 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDK 65 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs 65 (321)
..++-++|.||+|||||+++..+|..++..++..+.
T Consensus 154 ~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~ 189 (364)
T TIGR01242 154 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG 189 (364)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecch
Confidence 456679999999999999999999999877665543
No 253
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.66 E-value=0.0014 Score=57.73 Aligned_cols=28 Identities=36% Similarity=0.624 Sum_probs=25.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999999999765
No 254
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.66 E-value=0.0015 Score=58.78 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=25.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 5678999999999999999999999865
No 255
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.65 E-value=0.002 Score=57.99 Aligned_cols=30 Identities=27% Similarity=0.477 Sum_probs=27.0
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
++.+++.++.|.|++|||||+++..+|...
T Consensus 14 GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~ 43 (218)
T cd01394 14 GGVERGTVTQVYGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 567889999999999999999999999764
No 256
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.65 E-value=0.0072 Score=60.86 Aligned_cols=148 Identities=15% Similarity=0.185 Sum_probs=72.1
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhC-----CC--EEEecCcceeecCc-cccCCCCCHHhh----cCCCcccccccCCCcc
Q 020775 33 KVLILMGATGTGKSRLSIDMATRF-----PA--EIINSDKIQVYEGL-DIVTNKITEEEQ----CGIPHHLLGIQHPNAD 100 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l-----~~--eiIsaDs~QvYkgl-~I~T~k~~~~E~----~gvphhll~~~~~~~~ 100 (321)
..++|.||+|+|||.|+..++..+ +. ..++++.+ ...+ .-.. +.+.++. ..+.--++|-++...
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~dlLiiDDi~~l~- 224 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKF--TNDFVNALR-NNTMEEFKEKYRSVDVLLIDDIQFLA- 224 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHH--HHHHHHHHH-cCcHHHHHHHHhcCCEEEEehhhhhc-
Confidence 458999999999999999999875 22 24555543 1110 0000 0011111 122222333332111
Q ss_pred ccHhhHHHHHHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCe-EEEEEeC-CHHHHHHHHHHhHHHHHhcc
Q 020775 101 FTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDC-CFLWVDV-SMPVLRSFVSERVDRMVQNG 178 (321)
Q Consensus 101 ~~~~~f~~~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~-~~i~L~~-~~~~L~~RL~~R~~~Ml~~G 178 (321)
......+.....++.+.++|+. +++++.... . .+.+.++.++.|+.. .++.+.+ +.+.+.+-|.++.+.. .--
T Consensus 225 -~~~~~~~~l~~~~n~l~~~~~~-iiits~~~p-~-~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~-~~~ 299 (450)
T PRK00149 225 -GKERTQEEFFHTFNALHEAGKQ-IVLTSDRPP-K-ELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEE-GID 299 (450)
T ss_pred -CCHHHHHHHHHHHHHHHHCCCc-EEEECCCCH-H-HHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHc-CCC
Confidence 0011223334456667667764 444443221 1 112222345556543 4555655 5566666666665541 223
Q ss_pred HHHHHHHhhcC
Q 020775 179 MIDEVRKFFDP 189 (321)
Q Consensus 179 ll~Ev~~l~~~ 189 (321)
+-+|+.+++..
T Consensus 300 l~~e~l~~ia~ 310 (450)
T PRK00149 300 LPDEVLEFIAK 310 (450)
T ss_pred CCHHHHHHHHc
Confidence 56777776655
No 257
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=96.65 E-value=0.0012 Score=59.76 Aligned_cols=33 Identities=27% Similarity=0.389 Sum_probs=30.7
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.+|.++|-+||||||++..+- ++|+.+|++|.+
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~v 34 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVV 34 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCcEecHHHH
Confidence 478999999999999999987 899999999987
No 258
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.64 E-value=0.0012 Score=63.37 Aligned_cols=28 Identities=25% Similarity=0.487 Sum_probs=24.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
......|+|+|||||||||++..|+..+
T Consensus 129 v~~~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 129 VLARKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred HHcCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4456789999999999999999999875
No 259
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=96.63 E-value=0.0037 Score=59.65 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=25.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++++||+|||||||.+.|+...
T Consensus 28 i~~Gei~gllG~NGAGKTTllk~l~gl~ 55 (293)
T COG1131 28 VEPGEIFGLLGPNGAGKTTLLKILAGLL 55 (293)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 5678899999999999999999999875
No 260
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.63 E-value=0.0018 Score=66.55 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEE
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEII 61 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiI 61 (321)
..+++++.||+||||||....||+.++.+|+
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 4579999999999999999999999987654
No 261
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.61 E-value=0.0017 Score=59.09 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=26.1
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||...|+..+.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56789999999999999999999998763
No 262
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.61 E-value=0.0015 Score=65.53 Aligned_cols=35 Identities=26% Similarity=0.583 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC----C--CEEEecCc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF----P--AEIINSDK 65 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l----~--~eiIsaDs 65 (321)
++.+++|+|||||||||++..||..+ | .-++++|.
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 46789999999999999999999754 2 34678886
No 263
>PF13245 AAA_19: Part of AAA domain
Probab=96.61 E-value=0.0017 Score=49.76 Aligned_cols=26 Identities=19% Similarity=0.378 Sum_probs=20.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++++|.||+|||||+++..++..+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 46788999999999997666666553
No 264
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.61 E-value=0.0016 Score=58.20 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=25.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4678899999999999999999999765
No 265
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.61 E-value=0.0016 Score=58.27 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5678899999999999999999999865
No 266
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.60 E-value=0.0022 Score=59.17 Aligned_cols=27 Identities=26% Similarity=0.589 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.+.+++|.||+||||||+++.++..+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 355899999999999999999999876
No 267
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.59 E-value=0.0017 Score=58.24 Aligned_cols=28 Identities=29% Similarity=0.413 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678899999999999999999999765
No 268
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.59 E-value=0.0017 Score=58.43 Aligned_cols=28 Identities=25% Similarity=0.301 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999999999999865
No 269
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.59 E-value=0.0018 Score=66.22 Aligned_cols=41 Identities=24% Similarity=0.396 Sum_probs=34.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceee
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVY 69 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvY 69 (321)
.+.++-|.+.||+|||||.+|+.+|..++..++..|.-.++
T Consensus 256 l~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~ 296 (489)
T CHL00195 256 LPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLF 296 (489)
T ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhc
Confidence 45677899999999999999999999999988887754433
No 270
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.57 E-value=0.0018 Score=57.98 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
...+.+++|+||+|||||||...|+..+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678999999999999999999999764
No 271
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.57 E-value=0.0056 Score=60.52 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
...+++|+|||||||||+...|...+
T Consensus 148 ~~GlilI~G~TGSGKTT~l~al~~~i 173 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAASIYQHC 173 (372)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 45589999999999999999998876
No 272
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.56 E-value=0.0018 Score=59.07 Aligned_cols=28 Identities=25% Similarity=0.469 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
...+.+++|+||+|||||||...|+..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999999999999765
No 273
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.56 E-value=0.0018 Score=57.81 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=25.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5678899999999999999999999764
No 274
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.55 E-value=0.0019 Score=57.96 Aligned_cols=28 Identities=29% Similarity=0.339 Sum_probs=25.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678899999999999999999999764
No 275
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.55 E-value=0.0091 Score=60.82 Aligned_cols=27 Identities=26% Similarity=0.452 Sum_probs=24.3
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCC
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPA 58 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~ 58 (321)
+..++++||+|+||||+|..+|+.+++
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456899999999999999999999875
No 276
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.55 E-value=0.0023 Score=64.50 Aligned_cols=35 Identities=31% Similarity=0.419 Sum_probs=29.9
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEec
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINS 63 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsa 63 (321)
...++-++|.||+|||||++|+.+|..++..++..
T Consensus 214 i~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V 248 (438)
T PTZ00361 214 IKPPKGVILYGPPGTGKTLLAKAVANETSATFLRV 248 (438)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEE
Confidence 45677899999999999999999999988766554
No 277
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.54 E-value=0.0023 Score=63.55 Aligned_cols=36 Identities=22% Similarity=0.519 Sum_probs=29.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC-----CCEEEecCc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF-----PAEIINSDK 65 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l-----~~eiIsaDs 65 (321)
..+++++|+||+|+||||++..||..+ ..-+|++|.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDt 244 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDT 244 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCc
Confidence 467899999999999999999999765 234788885
No 278
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.54 E-value=0.002 Score=58.02 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=25.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999999999999865
No 279
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.53 E-value=0.0019 Score=58.09 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678899999999999999999999765
No 280
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.53 E-value=0.0019 Score=58.87 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 5678999999999999999999999764
No 281
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.53 E-value=0.0061 Score=55.73 Aligned_cols=28 Identities=14% Similarity=0.354 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 25 VDPGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678899999999999999999999865
No 282
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.53 E-value=0.0019 Score=59.00 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 5678999999999999999999999765
No 283
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.53 E-value=0.0018 Score=58.04 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 5678899999999999999999999764
No 284
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.53 E-value=0.0019 Score=63.54 Aligned_cols=27 Identities=33% Similarity=0.593 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.+..+|+|+|||||||||+...|+..+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999999875
No 285
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.53 E-value=0.0019 Score=58.15 Aligned_cols=28 Identities=21% Similarity=0.423 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999999999999765
No 286
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.52 E-value=0.0023 Score=57.10 Aligned_cols=32 Identities=19% Similarity=0.374 Sum_probs=27.9
Q ss_pred cccccCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 25 LVSRRQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 25 ~~~~~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
+.++.+++.++.|+||+|||||+++..++...
T Consensus 5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~ 36 (209)
T TIGR02237 5 LGGGVERGTITQIYGPPGSGKTNICMILAVNA 36 (209)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34677889999999999999999999998753
No 287
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.52 E-value=0.0024 Score=64.14 Aligned_cols=36 Identities=22% Similarity=0.497 Sum_probs=30.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC-----CCEEEecCc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF-----PAEIINSDK 65 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l-----~~eiIsaDs 65 (321)
.++.+|+++||+||||||++..||..+ ..-+|++|.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~ 138 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADT 138 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 357899999999999999999999755 346899996
No 288
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.52 E-value=0.0026 Score=60.14 Aligned_cols=29 Identities=28% Similarity=0.406 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCE
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAE 59 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~e 59 (321)
.+..++|.||+|+|||+|+..+|+.++..
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGVN 57 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 34568999999999999999999998754
No 289
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=96.52 E-value=0.0034 Score=55.12 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=20.7
Q ss_pred CCeEEEEEeCCHHHHHHHHHHhHH
Q 020775 149 YDCCFLWVDVSMPVLRSFVSERVD 172 (321)
Q Consensus 149 ~~~~~i~L~~~~~~L~~RL~~R~~ 172 (321)
.+-++|+|+++.++..+|+..|-.
T Consensus 118 ~PDl~~~Ldv~pe~~~~R~~~r~~ 141 (186)
T PF02223_consen 118 KPDLTFFLDVDPEEALKRIAKRGE 141 (186)
T ss_dssp E-SEEEEEECCHHHHHHHHHHTSS
T ss_pred CCCEEEEEecCHHHHHHHHHcCCc
Confidence 456789999999999999999976
No 290
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.51 E-value=0.0021 Score=57.52 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678999999999999999999999765
No 291
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.51 E-value=0.0019 Score=58.28 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678899999999999999999999765
No 292
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.51 E-value=0.019 Score=59.03 Aligned_cols=29 Identities=21% Similarity=0.233 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCE
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAE 59 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~e 59 (321)
.+..++++||.|+||||+|+.+|+.++++
T Consensus 42 i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 42 LAGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 35689999999999999999999999864
No 293
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.51 E-value=0.0021 Score=58.24 Aligned_cols=28 Identities=29% Similarity=0.326 Sum_probs=25.7
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5678999999999999999999999875
No 294
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.51 E-value=0.0023 Score=56.09 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=25.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678899999999999999999999764
No 295
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=96.50 E-value=0.0031 Score=61.51 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=25.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++..++|+|||||||||+.+.||.-.
T Consensus 26 i~~Gef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 26 IEDGEFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678899999999999999999999754
No 296
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.50 E-value=0.002 Score=58.62 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=25.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 4578899999999999999999999765
No 297
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.50 E-value=0.0075 Score=56.17 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=25.1
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++..+.|+|++|||||||++.||.-.
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence 5678999999999999999999999753
No 298
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.50 E-value=0.0021 Score=59.91 Aligned_cols=28 Identities=29% Similarity=0.353 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.++.|+||+|||||||-+.+|.-.
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5688999999999999999999999764
No 299
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.50 E-value=0.0022 Score=57.50 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=25.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678899999999999999999999865
No 300
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.49 E-value=0.008 Score=52.95 Aligned_cols=27 Identities=22% Similarity=0.527 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
+...-|+|+|++|+||||++..++..+
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHH
Confidence 345679999999999999999999876
No 301
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.49 E-value=0.011 Score=58.57 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++|.||+|+|||.|+..++..+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l 160 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEI 160 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 468999999999999999998765
No 302
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.49 E-value=0.0022 Score=56.85 Aligned_cols=28 Identities=25% Similarity=0.410 Sum_probs=25.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 4678899999999999999999999865
No 303
>PRK04195 replication factor C large subunit; Provisional
Probab=96.48 E-value=0.0026 Score=64.74 Aligned_cols=33 Identities=33% Similarity=0.601 Sum_probs=29.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecC
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSD 64 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaD 64 (321)
++.++|.||+|+|||++|..||+.++.+++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ieln 71 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELN 71 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEc
Confidence 678999999999999999999999987765443
No 304
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.48 E-value=0.011 Score=56.79 Aligned_cols=97 Identities=19% Similarity=0.211 Sum_probs=68.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC-----CCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccH
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF-----PAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTA 103 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l-----~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~ 103 (321)
..+..+|.|+|++|+|||||.-.|.++| ..-||..|-=--|-|=+|.-+|.+..+..--|--|+--. ...=+.
T Consensus 48 tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~--~srG~l 125 (323)
T COG1703 48 TGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSS--PSRGTL 125 (323)
T ss_pred CCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeec--CCCccc
Confidence 5577899999999999999999999887 245899998888999999999988877654333333211 112233
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEE
Q 020775 104 QNFCDMASFSIESTLNKGKVPIIV 127 (321)
Q Consensus 104 ~~f~~~a~~~i~~i~~~g~~pIiv 127 (321)
+.--+...+++.-+.+-|-..||+
T Consensus 126 GGlS~at~~~i~~ldAaG~DvIIV 149 (323)
T COG1703 126 GGLSRATREAIKLLDAAGYDVIIV 149 (323)
T ss_pred hhhhHHHHHHHHHHHhcCCCEEEE
Confidence 444445555666666777777765
No 305
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.47 E-value=0.0022 Score=58.47 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 5678899999999999999999999764
No 306
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.47 E-value=0.0023 Score=57.79 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=25.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 23 VRRGEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999999999764
No 307
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.47 E-value=0.0037 Score=60.63 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=25.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 105 I~~Ge~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 105 IKRNKVTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 5678899999999999999999999764
No 308
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.47 E-value=0.003 Score=62.97 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=30.8
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSD 64 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaD 64 (321)
...++-+++.||+|||||+++..+|...+..++...
T Consensus 176 l~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~ 211 (398)
T PTZ00454 176 IDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVV 211 (398)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence 456788999999999999999999999987766543
No 309
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.47 E-value=0.0036 Score=55.49 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=23.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHh
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMAT 54 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~ 54 (321)
..++.+++|+||+|||||||.+.+..
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 56788999999999999999998863
No 310
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.47 E-value=0.0028 Score=58.28 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 26 IPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4678899999999999999999999765
No 311
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=96.46 E-value=0.0039 Score=55.13 Aligned_cols=39 Identities=21% Similarity=0.532 Sum_probs=32.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeec
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYE 70 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYk 70 (321)
.+.=|.|+|++|+|||++|.+|.++ |..+|+=|.+.+++
T Consensus 17 ~G~GVLi~G~SG~GKS~lAl~Li~r-Gh~lvaDD~v~i~~ 55 (171)
T PF07475_consen 17 GGVGVLITGPSGIGKSELALELIKR-GHRLVADDRVEIRR 55 (171)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-T-EEEESSEEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHC-CCeEEeCCEEEEEE
Confidence 3456899999999999999999986 77888888887776
No 312
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.46 E-value=0.0024 Score=56.75 Aligned_cols=29 Identities=28% Similarity=0.273 Sum_probs=25.8
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||...|+....
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46788999999999999999999998753
No 313
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.46 E-value=0.0023 Score=58.60 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 25 IPSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999999999999865
No 314
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.45 E-value=0.0023 Score=58.44 Aligned_cols=28 Identities=25% Similarity=0.419 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 5688999999999999999999999764
No 315
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.45 E-value=0.0017 Score=62.22 Aligned_cols=30 Identities=27% Similarity=0.506 Sum_probs=26.1
Q ss_pred ccCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 28 RRQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
....+..++|+|||||||||+...|+..++
T Consensus 140 ~v~~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 140 AIASRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred HhhCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 345678999999999999999999998774
No 316
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.45 E-value=0.0027 Score=55.35 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 5678899999999999999999999865
No 317
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.45 E-value=0.0024 Score=57.94 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 33 VKRGETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 5678999999999999999999999765
No 318
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.44 E-value=0.0023 Score=56.91 Aligned_cols=28 Identities=29% Similarity=0.357 Sum_probs=25.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578899999999999999999999765
No 319
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.44 E-value=0.0098 Score=59.97 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=21.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.-++|.||+|+|||.|+..++..+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l 154 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Confidence 359999999999999999999864
No 320
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.44 E-value=0.0031 Score=52.91 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=26.1
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCE
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAE 59 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~e 59 (321)
.+.+.+|++.|+-||||||+++.+++.++.+
T Consensus 12 l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 12 LKPGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp HSS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 4577899999999999999999999999753
No 321
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.44 E-value=0.0027 Score=64.74 Aligned_cols=36 Identities=31% Similarity=0.577 Sum_probs=28.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC----C---CEEEecCc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF----P---AEIINSDK 65 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l----~---~eiIsaDs 65 (321)
.++.+++++||||+||||++..||..+ | .-+|.+|.
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt 296 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDS 296 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCc
Confidence 356899999999999999999999765 2 23577775
No 322
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.43 E-value=0.0025 Score=55.56 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678899999999999999999999865
No 323
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.42 E-value=0.0025 Score=57.73 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=24.9
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+.-.
T Consensus 10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 10 MGYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4577899999999999999999999754
No 324
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.42 E-value=0.0032 Score=57.92 Aligned_cols=28 Identities=32% Similarity=0.413 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 24 IPKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 5688999999999999999999999764
No 325
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.42 E-value=0.0026 Score=63.71 Aligned_cols=37 Identities=24% Similarity=0.405 Sum_probs=33.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCccee
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQV 68 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~Qv 68 (321)
+..|+++||||||||-||..||+-++.+|.=+|--++
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtL 262 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTL 262 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHhCCCeEEecccch
Confidence 4579999999999999999999999999988887543
No 326
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.42 E-value=0.0026 Score=61.78 Aligned_cols=31 Identities=26% Similarity=0.379 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEE
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEII 61 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiI 61 (321)
.++.|.|.||+|||||+++..||+.++..++
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 3567999999999999999999999987653
No 327
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.40 E-value=0.0026 Score=57.80 Aligned_cols=28 Identities=25% Similarity=0.345 Sum_probs=25.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 30 LRAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 5678999999999999999999999754
No 328
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.40 E-value=0.0026 Score=57.71 Aligned_cols=28 Identities=18% Similarity=0.310 Sum_probs=25.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999999999764
No 329
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.39 E-value=0.0022 Score=53.42 Aligned_cols=23 Identities=30% Similarity=0.774 Sum_probs=20.7
Q ss_pred EEEEEcCCcccHHHHHHHHHhhC
Q 020775 34 VLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l 56 (321)
+++|+||+|+|||+++..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998875
No 330
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.39 E-value=0.0026 Score=57.45 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 28 IKKGETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999999999999765
No 331
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.39 E-value=0.0026 Score=58.09 Aligned_cols=27 Identities=37% Similarity=0.573 Sum_probs=24.9
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..++.+++|+||+|||||||...|+..
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 23 VKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 567889999999999999999999986
No 332
>PRK10908 cell division protein FtsE; Provisional
Probab=96.39 E-value=0.0027 Score=57.39 Aligned_cols=28 Identities=25% Similarity=0.265 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5688999999999999999999999765
No 333
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.39 E-value=0.0026 Score=58.70 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=24.8
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..++.+++|+||+|||||||...|+..
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHHhh
Confidence 567899999999999999999999975
No 334
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=96.39 E-value=0.0036 Score=58.53 Aligned_cols=28 Identities=29% Similarity=0.419 Sum_probs=25.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 43 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 43 FEKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 5678999999999999999999999865
No 335
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.38 E-value=0.0028 Score=63.66 Aligned_cols=35 Identities=31% Similarity=0.554 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC-------CCEEEecCc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF-------PAEIINSDK 65 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l-------~~eiIsaDs 65 (321)
.+.+++|+||||+||||++..||..+ ..-+|++|.
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 45799999999999999999888653 234778876
No 336
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=96.38 E-value=0.0048 Score=57.88 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=25.1
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.++.|+||+|+|||||.+.+..-+
T Consensus 27 v~~G~~~~iiGPNGaGKSTLlK~iLGll 54 (254)
T COG1121 27 VEKGEITALIGPNGAGKSTLLKAILGLL 54 (254)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999999999998744
No 337
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.38 E-value=0.038 Score=47.37 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=26.3
Q ss_pred EEEEEcCCcccHHHHHHHHHhhC-----CCEEEecCc
Q 020775 34 VLILMGATGTGKSRLSIDMATRF-----PAEIINSDK 65 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l-----~~eiIsaDs 65 (321)
++.++|++||||||++..++..+ ..-++.+|-
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 37889999999999999999875 245777784
No 338
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.38 E-value=0.0029 Score=56.59 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=26.1
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||...|+..+.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 24 LNAGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56889999999999999999999998753
No 339
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.38 E-value=0.0028 Score=56.32 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGLL 50 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999999999999865
No 340
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.38 E-value=0.0039 Score=62.58 Aligned_cols=36 Identities=28% Similarity=0.533 Sum_probs=28.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC-------CCEEEecCc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF-------PAEIINSDK 65 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l-------~~eiIsaDs 65 (321)
.++.+++++||||+||||+...||..+ .+.+|.+|.
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~ 231 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDS 231 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCC
Confidence 467899999999999999999998753 234666666
No 341
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.38 E-value=0.0028 Score=56.66 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=25.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 4678999999999999999999999764
No 342
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.38 E-value=0.0028 Score=55.40 Aligned_cols=28 Identities=25% Similarity=0.426 Sum_probs=25.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||.+.|+...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 5678999999999999999999999875
No 343
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.37 E-value=0.0031 Score=60.71 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEE
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEI 60 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~ei 60 (321)
.+..++|.||+|+|||++|..+|..++..+
T Consensus 50 ~~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 50 ALDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred CCCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 346789999999999999999999998654
No 344
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.37 E-value=0.0031 Score=54.83 Aligned_cols=29 Identities=34% Similarity=0.531 Sum_probs=25.9
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||...|+..+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46788999999999999999999998753
No 345
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.36 E-value=0.0028 Score=58.97 Aligned_cols=28 Identities=25% Similarity=0.417 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999999999999765
No 346
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.36 E-value=0.0028 Score=58.03 Aligned_cols=28 Identities=29% Similarity=0.388 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678999999999999999999999765
No 347
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.35 E-value=0.0029 Score=57.80 Aligned_cols=28 Identities=29% Similarity=0.336 Sum_probs=25.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567899999999999999999999765
No 348
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.35 E-value=0.0029 Score=58.15 Aligned_cols=28 Identities=21% Similarity=0.328 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999999999865
No 349
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.35 E-value=0.0029 Score=58.19 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 26 VKPGEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5678899999999999999999999765
No 350
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.35 E-value=0.0035 Score=64.51 Aligned_cols=36 Identities=31% Similarity=0.619 Sum_probs=29.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC-------CCEEEecCc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF-------PAEIINSDK 65 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l-------~~eiIsaDs 65 (321)
..+.+|+|+||||+||||++..||..+ ..-+|+.|.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDt 390 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDT 390 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccc
Confidence 467899999999999999999998753 234788886
No 351
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.35 E-value=0.003 Score=57.37 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=25.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999999999999765
No 352
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.35 E-value=0.0032 Score=60.98 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=26.9
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEE
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEII 61 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiI 61 (321)
.+.|+|+|++|||||||+..|+..++..++
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v 191 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSA 191 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 468999999999999999999999887663
No 353
>PF05729 NACHT: NACHT domain
Probab=96.34 E-value=0.0026 Score=53.55 Aligned_cols=25 Identities=36% Similarity=0.605 Sum_probs=22.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
++++|.|++|+|||+++..++..+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH
Confidence 4789999999999999999998763
No 354
>PHA02244 ATPase-like protein
Probab=96.34 E-value=0.0029 Score=62.48 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=29.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSD 64 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaD 64 (321)
..+.-|.|.||||||||+||..||..++.+++..+
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In 151 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMN 151 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 44556888999999999999999999987766544
No 355
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.34 E-value=0.0033 Score=54.67 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=26.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||...|+..+.
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 56789999999999999999999998753
No 356
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0028 Score=66.68 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=29.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEe
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIIN 62 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIs 62 (321)
.++++++++||+|+|||+|+..+|+.+|=+++.
T Consensus 348 ~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR 380 (782)
T COG0466 348 LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR 380 (782)
T ss_pred CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE
Confidence 467899999999999999999999999866543
No 357
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.34 E-value=0.0027 Score=56.83 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=23.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++ +++|+||+|||||||...|+..+
T Consensus 23 i~~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 23 LGPG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred EcCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 3456 99999999999999999999764
No 358
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.33 E-value=0.002 Score=62.51 Aligned_cols=28 Identities=21% Similarity=0.425 Sum_probs=24.1
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
......|+|+|+|||||||+..+|+...
T Consensus 141 v~~~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 141 IDSRLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred HHcCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3346689999999999999999999875
No 359
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.33 E-value=0.0031 Score=56.62 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=25.7
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRLIAGLL 52 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5688999999999999999999999865
No 360
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.33 E-value=0.002 Score=62.65 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=25.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
......|+|+|+|||||||+..+|....+
T Consensus 157 v~~~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 34577899999999999999999998876
No 361
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.33 E-value=0.0036 Score=63.81 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=31.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDK 65 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs 65 (321)
...++-+++.||+|||||++++.||...+..++..+.
T Consensus 85 ~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~ 121 (495)
T TIGR01241 85 AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 121 (495)
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccH
Confidence 3445679999999999999999999999888776654
No 362
>COG2087 CobU Adenosyl cobinamide kinase/adenosyl cobinamide phosphate guanylyltransferase [Coenzyme metabolism]
Probab=96.33 E-value=0.0057 Score=53.92 Aligned_cols=93 Identities=18% Similarity=0.284 Sum_probs=64.0
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhh-cCCCcccccccCCCccccHhhHHHHHH
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQ-CGIPHHLLGIQHPNADFTAQNFCDMAS 111 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~-~gvphhll~~~~~~~~~~~~~f~~~a~ 111 (321)
+.|+|+|+.=||||+.|-.||...++.++ =|.|+++...|+ +.|.||-- ..|..=.++..+...+.
T Consensus 1 ~~ilvtGgaRSGKS~~AE~la~~~~~~v~-----------YvAT~~a~D~Em~~RI~~Hr~--rRp~~W~tvE~~~~l~~ 67 (175)
T COG2087 1 MMILVTGGARSGKSSFAEALAGESGGQVL-----------YVATGRAFDDEMQERIAHHRA--RRPEHWRTVEAPLDLAT 67 (175)
T ss_pred CeEEEecCccCCchHHHHHHHHhhCCceE-----------EEEecCCCCHHHHHHHHHHHh--cCCCcceEEeccccHHH
Confidence 36899999999999999999999776652 267888886665 77888864 22222223344444433
Q ss_pred HHHHHHhhcCCcEEEEcCchHHHHHHhcc
Q 020775 112 FSIESTLNKGKVPIIVGGSNSYIEALVDD 140 (321)
Q Consensus 112 ~~i~~i~~~g~~pIivGGt~~Y~~all~g 140 (321)
.+.... .+..+|++.+-++|+..++..
T Consensus 68 -~L~~~~-~~~~~VLvDcLt~wvtNll~~ 94 (175)
T COG2087 68 -LLEALI-EPGDVVLVDCLTLWVTNLLFA 94 (175)
T ss_pred -HHHhcc-cCCCEEEEEcHHHHHHHHHhc
Confidence 333332 344699999999999988863
No 363
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.32 E-value=0.0032 Score=57.72 Aligned_cols=28 Identities=25% Similarity=0.421 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (242)
T cd03295 24 IAKGEFLVLIGPSGSGKTTTMKMINRLI 51 (242)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5678899999999999999999999765
No 364
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.32 E-value=0.003 Score=58.68 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 36 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 36 IAKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 5678999999999999999999999764
No 365
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.32 E-value=0.0031 Score=56.76 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 5688999999999999999999999764
No 366
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.32 E-value=0.003 Score=56.11 Aligned_cols=27 Identities=33% Similarity=0.453 Sum_probs=24.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..++.+++|+||+|||||||...|+..
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999999964
No 367
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.32 E-value=0.0033 Score=58.57 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=25.8
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
......|+|+|||||||||+...|...++
T Consensus 124 v~~~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp HHTTEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred cccceEEEEECCCccccchHHHHHhhhcc
Confidence 44578999999999999999999998864
No 368
>PRK14974 cell division protein FtsY; Provisional
Probab=96.31 E-value=0.0035 Score=61.17 Aligned_cols=35 Identities=29% Similarity=0.440 Sum_probs=27.2
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC---C--CEEEecCc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF---P--AEIINSDK 65 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l---~--~eiIsaDs 65 (321)
++.+|+++||+|+||||++..||..+ + .-++++|.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt 178 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDT 178 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 57899999999999999888888764 2 23566663
No 369
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.31 E-value=0.0031 Score=57.69 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999999999999765
No 370
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.31 E-value=0.0032 Score=55.33 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=25.8
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||...|+..+.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45788999999999999999999998753
No 371
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.31 E-value=0.0032 Score=58.42 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
...+.+++|+||+|||||||...|+..+
T Consensus 22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 22 ISESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999999999875
No 372
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.31 E-value=0.004 Score=57.39 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=25.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 27 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 27 IPQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 5678999999999999999999999764
No 373
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.31 E-value=0.0042 Score=57.20 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=25.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 27 FEEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 5678899999999999999999999764
No 374
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.31 E-value=0.0032 Score=56.60 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=25.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+.-+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 28 VKPGEVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 4578899999999999999999999764
No 375
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.30 E-value=0.0036 Score=63.13 Aligned_cols=37 Identities=24% Similarity=0.517 Sum_probs=30.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC-----CCEEEecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF-----PAEIINSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l-----~~eiIsaDs~ 66 (321)
.+|.+|+++|++||||||++..||..+ ..-+|++|..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 357899999999999999999999876 2457888863
No 376
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.30 E-value=0.0035 Score=53.31 Aligned_cols=28 Identities=29% Similarity=0.320 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|.||+|||||||...|+..+
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGEL 50 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 4678899999999999999999999875
No 377
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.30 E-value=0.008 Score=55.33 Aligned_cols=44 Identities=23% Similarity=0.410 Sum_probs=33.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC---CEEEecCcceeecCccccCCCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP---AEIINSDKIQVYEGLDIVTNKI 79 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~---~eiIsaDs~QvYkgl~I~T~k~ 79 (321)
...+.+.+|+||+|+|||||.+.|...+. |++ -|-|.+.-+.+|
T Consensus 24 ~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v-------~~~g~~l~~~~~ 70 (259)
T COG4559 24 LRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV-------TLNGVPLNSWPP 70 (259)
T ss_pred ccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeE-------eeCCcChhhCCH
Confidence 34678999999999999999999998874 343 355666655443
No 378
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.29 E-value=0.0033 Score=56.28 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=25.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl~ 48 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAGFE 48 (211)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999999999765
No 379
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.29 E-value=0.0032 Score=57.36 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=25.1
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 36 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLTCLAILGLL 36 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578899999999999999999999764
No 380
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.29 E-value=0.0025 Score=54.96 Aligned_cols=29 Identities=28% Similarity=0.509 Sum_probs=19.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
...+++++|.|++|+|||+|...+..++.
T Consensus 21 ~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 21 SGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp S-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34678999999999999999999888764
No 381
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.29 E-value=0.0032 Score=57.59 Aligned_cols=28 Identities=18% Similarity=0.271 Sum_probs=25.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999999999999865
No 382
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=96.29 E-value=0.0047 Score=59.79 Aligned_cols=47 Identities=17% Similarity=0.403 Sum_probs=32.9
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCE-EEecCcceeecCccccC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAE-IINSDKIQVYEGLDIVT 76 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~e-iIsaDs~QvYkgl~I~T 76 (321)
..++.+++|+|++|||||||+..|+.-..-. -..+.++ .|.|.++..
T Consensus 30 i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i-~~~g~~i~~ 77 (330)
T PRK15093 30 LTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRM-RFDDIDLLR 77 (330)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEE-EECCEECCc
Confidence 5688999999999999999999999875310 0112222 456766654
No 383
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.28 E-value=0.0034 Score=55.94 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 51 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLL 51 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5688999999999999999999999765
No 384
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.28 E-value=0.0035 Score=56.80 Aligned_cols=28 Identities=21% Similarity=0.373 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
...+.+++|+||+|||||||...|+..+
T Consensus 26 i~~G~~~~i~G~nGsGKSTLl~~l~G~~ 53 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLINLLMRFY 53 (229)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 5678899999999999999999999765
No 385
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=96.28 E-value=0.0042 Score=57.69 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 54 (262)
T PRK09984 27 IHHGEMVALLGPSGSGKSTLLRHLSGLI 54 (262)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 4678999999999999999999999765
No 386
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=96.28 E-value=0.0042 Score=57.56 Aligned_cols=28 Identities=21% Similarity=0.348 Sum_probs=25.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 27 IEPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 5678999999999999999999999764
No 387
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.28 E-value=0.0033 Score=57.33 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=25.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.+++.+++|+||+|||||||...|+..+
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred ecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 5678999999999999999999999775
No 388
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.26 E-value=0.0031 Score=61.80 Aligned_cols=29 Identities=24% Similarity=0.574 Sum_probs=26.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
...++-|.|.||+|||||.||..+|+.+|
T Consensus 62 k~aGrgiLi~GppgTGKTAlA~gIa~eLG 90 (450)
T COG1224 62 KMAGRGILIVGPPGTGKTALAMGIARELG 90 (450)
T ss_pred cccccEEEEECCCCCcHHHHHHHHHHHhC
Confidence 44678999999999999999999999996
No 389
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.26 E-value=0.0034 Score=57.78 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=24.9
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 26 IFKNQITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 5678899999999999999999999643
No 390
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.26 E-value=0.0035 Score=56.84 Aligned_cols=28 Identities=25% Similarity=0.536 Sum_probs=25.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
...+.+++|+||+|||||||...|+..+
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~l~G~~ 57 (226)
T cd03234 30 VESGQVMAILGSSGSGKTTLLDAISGRV 57 (226)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence 5678999999999999999999999764
No 391
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=96.25 E-value=0.0049 Score=59.79 Aligned_cols=47 Identities=19% Similarity=0.337 Sum_probs=33.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVT 76 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T 76 (321)
..++.+++|+|++|||||||+..|+.-+.-.-+.+..+ .|.|-++.+
T Consensus 39 i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I-~~~G~~i~~ 85 (330)
T PRK09473 39 LRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSA-TFNGREILN 85 (330)
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEE-EECCEECCc
Confidence 56889999999999999999999998763110112222 466766654
No 392
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.25 E-value=0.0035 Score=57.15 Aligned_cols=28 Identities=25% Similarity=0.415 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 4678999999999999999999999765
No 393
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.25 E-value=0.0039 Score=56.06 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..+..++|.||+|||||++|..+++..
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999875
No 394
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.25 E-value=0.0035 Score=61.08 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
...+|+|+|||||||||+...|...++
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 457999999999999999999988653
No 395
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.25 E-value=0.0039 Score=56.68 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.++.+++|+||+|||||||...|+..+
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 30 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLI 30 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999999865
No 396
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.25 E-value=0.0037 Score=54.82 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999999999999865
No 397
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=96.25 E-value=0.049 Score=53.39 Aligned_cols=41 Identities=24% Similarity=0.430 Sum_probs=31.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEG 71 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkg 71 (321)
....++++.|+||||||++...|++. +..+|+.-+..-|+|
T Consensus 139 ~~~~~ivl~G~TGsGKT~iL~~L~~~-~~~vlDlE~~aehrG 179 (345)
T PRK11784 139 AQFPLVVLGGNTGSGKTELLQALANA-GAQVLDLEGLANHRG 179 (345)
T ss_pred ccCceEecCCCCcccHHHHHHHHHhc-CCeEEECCchhhhcc
Confidence 34567889999999999999999865 556777766544444
No 398
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.24 E-value=0.0041 Score=62.54 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=29.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC----C--CEEEecCc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF----P--AEIINSDK 65 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l----~--~eiIsaDs 65 (321)
++.+++++||+||||||++..||..+ + .-+|++|.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~ 138 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDL 138 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 57799999999999999999998764 2 35799996
No 399
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.24 E-value=0.0036 Score=58.07 Aligned_cols=28 Identities=21% Similarity=0.385 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 35 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 35 IPENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5678999999999999999999999754
No 400
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.23 E-value=0.004 Score=56.45 Aligned_cols=31 Identities=23% Similarity=0.382 Sum_probs=27.2
Q ss_pred cccccCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 25 LVSRRQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 25 ~~~~~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
+.++.+++.++.|+||+|||||+|+..++..
T Consensus 12 l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 12 LGGGIETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred ccCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3466788999999999999999999999854
No 401
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.23 E-value=0.0036 Score=57.70 Aligned_cols=28 Identities=36% Similarity=0.432 Sum_probs=25.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (253)
T TIGR02323 26 LYPGEVLGIVGESGSGKSTLLGCLAGRL 53 (253)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999999999999875
No 402
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.23 E-value=0.0033 Score=53.65 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=21.5
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
++|.|+|+.+||||||+..|...+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998776
No 403
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.22 E-value=0.0049 Score=56.82 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=25.9
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||...|+..+.
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14249 27 FPERQITAIIGPSGCGKSTLLRALNRMND 55 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 56789999999999999999999998753
No 404
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.22 E-value=0.0035 Score=57.80 Aligned_cols=28 Identities=18% Similarity=0.431 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (255)
T PRK11300 28 VREQEIVSLIGPNGAGKTTVFNCLTGFY 55 (255)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence 4678999999999999999999999875
No 405
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.22 E-value=0.0038 Score=56.46 Aligned_cols=28 Identities=25% Similarity=0.437 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 31 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 58 (224)
T TIGR02324 31 VNAGECVALSGPSGAGKSTLLKSLYANY 58 (224)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678999999999999999999999765
No 406
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=96.22 E-value=0.0094 Score=57.63 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..+..++|.||+|+|||+++..+++.+
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 345689999999999999999998764
No 407
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.22 E-value=0.0037 Score=56.77 Aligned_cols=28 Identities=25% Similarity=0.394 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 5678899999999999999999999775
No 408
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.22 E-value=0.0039 Score=56.18 Aligned_cols=28 Identities=25% Similarity=0.357 Sum_probs=25.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.+++.+++|+||+|||||||...|+...
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 27 IKPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 5678899999999999999999999764
No 409
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.22 E-value=0.023 Score=59.94 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPA 58 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~ 58 (321)
.+..++++||.|+||||+|+.||+.+++
T Consensus 37 LpHA~LFtGP~GvGKTTLAriLAkaLnC 64 (700)
T PRK12323 37 LHHAYLFTGTRGVGKTTLSRILAKSLNC 64 (700)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4567899999999999999999999876
No 410
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.21 E-value=0.0036 Score=58.05 Aligned_cols=28 Identities=29% Similarity=0.483 Sum_probs=25.7
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (258)
T PRK11701 29 LYPGEVLGIVGESGSGKTTLLNALSARL 56 (258)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5688999999999999999999999865
No 411
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.21 E-value=0.0039 Score=54.03 Aligned_cols=28 Identities=29% Similarity=0.461 Sum_probs=25.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999999999999765
No 412
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.21 E-value=0.0044 Score=61.77 Aligned_cols=34 Identities=29% Similarity=0.330 Sum_probs=27.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSD 64 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaD 64 (321)
....++|.||+|+||||+|..||+.++..++..+
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~ 68 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGATDAPFEALS 68 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 3456888999999999999999999887655443
No 413
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.21 E-value=0.0035 Score=56.13 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=26.1
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||...|+..+.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 56789999999999999999999998753
No 414
>PRK05973 replicative DNA helicase; Provisional
Probab=96.21 E-value=0.0041 Score=57.80 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=26.4
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
++.+++.+++|.|+||+|||+++..++..
T Consensus 59 GGl~~Gsl~LIaG~PG~GKT~lalqfa~~ 87 (237)
T PRK05973 59 SQLKPGDLVLLGARPGHGKTLLGLELAVE 87 (237)
T ss_pred CCCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 67788999999999999999999998865
No 415
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.21 E-value=0.0037 Score=58.37 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 35 IPAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5678899999999999999999999865
No 416
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.21 E-value=0.0093 Score=60.30 Aligned_cols=147 Identities=12% Similarity=0.144 Sum_probs=70.7
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhC---CC--EEEecCcceeecCccccCCCCCHHh----hcCCCcccccccCCCc--cc
Q 020775 33 KVLILMGATGTGKSRLSIDMATRF---PA--EIINSDKIQVYEGLDIVTNKITEEE----QCGIPHHLLGIQHPNA--DF 101 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l---~~--eiIsaDs~QvYkgl~I~T~k~~~~E----~~gvphhll~~~~~~~--~~ 101 (321)
.-++|.||+|+|||.|+..++..+ +. ..++++.+- ....+...++ ..++ ...++--++|-.+... ..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~-~~~~~~l~~~-~~~~f~~~~~~~dvLiIDDiq~l~~k~~ 219 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFT-EHLVSAIRSG-EMQRFRQFYRNVDALFIEDIEVFSGKGA 219 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHH-HHHHHHHhcc-hHHHHHHHcccCCEEEEcchhhhcCChh
Confidence 457899999999999999999864 23 344444320 0000000000 1111 1222223343322111 12
Q ss_pred cHhhHHHHHHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCe-EEEEEeC-CHHHHHHHHHHhHHHHHhccH
Q 020775 102 TAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDC-CFLWVDV-SMPVLRSFVSERVDRMVQNGM 179 (321)
Q Consensus 102 ~~~~f~~~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~-~~i~L~~-~~~~L~~RL~~R~~~Ml~~Gl 179 (321)
+.. .....+..+...|+ +||.+++.. . ..+.+.++.++.|+.. +.+-+.+ +.+.+.+-|.++.+.. .-.+
T Consensus 220 ~qe----elf~l~N~l~~~~k-~IIlts~~~-p-~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~-~~~l 291 (445)
T PRK12422 220 TQE----EFFHTFNSLHTEGK-LIVISSTCA-P-QDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEAL-SIRI 291 (445)
T ss_pred hHH----HHHHHHHHHHHCCC-cEEEecCCC-H-HHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHc-CCCC
Confidence 222 22334555556666 455544321 0 1112222345566643 4555654 5667766676666552 2335
Q ss_pred HHHHHHhhcC
Q 020775 180 IDEVRKFFDP 189 (321)
Q Consensus 180 l~Ev~~l~~~ 189 (321)
-+|+.+++..
T Consensus 292 ~~evl~~la~ 301 (445)
T PRK12422 292 EETALDFLIE 301 (445)
T ss_pred CHHHHHHHHH
Confidence 6777776544
No 417
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.20 E-value=0.0038 Score=57.52 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=25.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 28 i~~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 28 IYKREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5678999999999999999999999763
No 418
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.20 E-value=0.0038 Score=57.63 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=24.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..++.+++|+||+|||||||...|+.-
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 29 IPKNRVTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 567889999999999999999999964
No 419
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.20 E-value=0.0038 Score=58.24 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=24.7
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..++.+++|+||+|||||||...|+..
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 44 IEKHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 567889999999999999999999974
No 420
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.20 E-value=0.0038 Score=57.49 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=24.7
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..++.+++|+||+|||||||...|+..
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 28 FNQNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 567889999999999999999999974
No 421
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.19 E-value=0.0038 Score=56.79 Aligned_cols=28 Identities=29% Similarity=0.376 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 45 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 45 VPRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5688999999999999999999999764
No 422
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.19 E-value=0.0038 Score=56.15 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 21 VADGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999999999865
No 423
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.19 E-value=0.0029 Score=55.42 Aligned_cols=30 Identities=20% Similarity=0.517 Sum_probs=25.8
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
+...++.+.+|.||+|+|||+++..++.++
T Consensus 27 g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 27 GLLPRGELTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp TEE-TTSEEEEEECSTSSHHHHHHHHHHHH
T ss_pred CcccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 446678899999999999999999999874
No 424
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.19 E-value=0.0037 Score=56.15 Aligned_cols=27 Identities=33% Similarity=0.327 Sum_probs=24.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..+ .+++|+||+|||||||...|+..+
T Consensus 21 i~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 21 LNE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred Ecc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 356 899999999999999999999765
No 425
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.18 E-value=0.0064 Score=55.43 Aligned_cols=43 Identities=26% Similarity=0.417 Sum_probs=31.7
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcce-eecCccccC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQ-VYEGLDIVT 76 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~Q-vYkgl~I~T 76 (321)
.+++++-.|+||+|+|||||...+++-++ .|+-. .++|.++++
T Consensus 24 i~~g~iTs~IGPNGAGKSTLLS~~sRL~~-----~d~G~i~i~g~~~~~ 67 (252)
T COG4604 24 IPKGGITSIIGPNGAGKSTLLSMMSRLLK-----KDSGEITIDGLELTS 67 (252)
T ss_pred ecCCceeEEECCCCccHHHHHHHHHHhcc-----ccCceEEEeeeeccc
Confidence 56889999999999999999888887643 33333 345666654
No 426
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.18 E-value=0.0038 Score=57.95 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=25.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++..++|+||||||||||...|+.-+
T Consensus 27 i~~Ge~~~i~G~nGsGKSTL~~~l~GLl 54 (235)
T COG1122 27 IEKGERVLLIGPNGSGKSTLLKLLNGLL 54 (235)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCcC
Confidence 5678899999999999999999998764
No 427
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.18 E-value=0.0037 Score=58.33 Aligned_cols=28 Identities=32% Similarity=0.320 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 34 FPAGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 5678999999999999999999999765
No 428
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.18 E-value=0.004 Score=58.22 Aligned_cols=28 Identities=25% Similarity=0.241 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 59 (269)
T PRK13648 32 IPKGQWTSIVGHNGSGKSTIAKLMIGIE 59 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5678999999999999999999999765
No 429
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=96.18 E-value=0.005 Score=57.71 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=25.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+|++|||||||...|+..+
T Consensus 47 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~ 74 (271)
T PRK14238 47 IHENEVTAIIGPSGCGKSTYIKTLNRMV 74 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5688999999999999999999999764
No 430
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.17 E-value=0.004 Score=56.73 Aligned_cols=28 Identities=25% Similarity=0.388 Sum_probs=25.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
...+.+++|+||+|||||||...|+...
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (232)
T PRK10771 22 VERGERVAILGPSGAGKSTLLNLIAGFL 49 (232)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578899999999999999999999865
No 431
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=96.17 E-value=0.004 Score=57.31 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=24.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..++.+++|+||+|||||||...|+..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 28 FYPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 457889999999999999999999864
No 432
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=96.17 E-value=0.0039 Score=61.15 Aligned_cols=27 Identities=30% Similarity=0.415 Sum_probs=24.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
+.++.++.+.||+||||||+.+.||.-
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 567789999999999999999999975
No 433
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.17 E-value=0.0042 Score=56.23 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 37 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 64 (226)
T cd03248 37 LHPGEVTALVGPSGSGKSTVVALLENFY 64 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 5678999999999999999999999765
No 434
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.17 E-value=0.0041 Score=56.58 Aligned_cols=28 Identities=21% Similarity=0.333 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 51 (236)
T cd03253 24 IPAGKKVAIVGPSGSGKSTILRLLFRFY 51 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 5678999999999999999999999765
No 435
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.17 E-value=0.0042 Score=55.37 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=25.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.+++.+++|+||+|||||||...|+...
T Consensus 28 i~~G~~~~i~G~nG~GKSTLl~~i~G~~ 55 (204)
T cd03250 28 VPKGELVAIVGPVGSGKSSLLSALLGEL 55 (204)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 5688999999999999999999999865
No 436
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.17 E-value=0.0042 Score=55.50 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=25.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 31 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 31 VKAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 5678999999999999999999999764
No 437
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.17 E-value=0.0039 Score=57.41 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=24.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..++.+++|+||+|||||||...|+..
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 26 IEEKSVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhhh
Confidence 567899999999999999999999863
No 438
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.17 E-value=0.004 Score=57.05 Aligned_cols=28 Identities=18% Similarity=0.320 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 44 i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 44 IEKGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 5678999999999999999999999764
No 439
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.17 E-value=0.0031 Score=58.52 Aligned_cols=30 Identities=23% Similarity=0.493 Sum_probs=23.2
Q ss_pred EEcCCcccHHHHHHHHHhhCC-----CEEEecCcc
Q 020775 37 LMGATGTGKSRLSIDMATRFP-----AEIINSDKI 66 (321)
Q Consensus 37 I~GpTGSGKStLa~~LA~~l~-----~eiIsaDs~ 66 (321)
|+||.||||||+...+.+.+. ..+||.|--
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa 35 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPA 35 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchH
Confidence 689999999999999998763 468998863
No 440
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.17 E-value=0.003 Score=51.07 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.7
Q ss_pred EEEEcCCcccHHHHHHHHHhhCC
Q 020775 35 LILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 35 IvI~GpTGSGKStLa~~LA~~l~ 57 (321)
|.|.||+|+|||+++..||+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998764
No 441
>PRK13768 GTPase; Provisional
Probab=96.16 E-value=0.0053 Score=57.28 Aligned_cols=34 Identities=24% Similarity=0.523 Sum_probs=28.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhC-----CCEEEecCc
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRF-----PAEIINSDK 65 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l-----~~eiIsaDs 65 (321)
..+++|.||.||||||++..++..+ ..-+|+.|.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 4689999999999999999888765 245788886
No 442
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.16 E-value=0.0042 Score=57.27 Aligned_cols=28 Identities=25% Similarity=0.320 Sum_probs=25.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (251)
T PRK14270 27 IYENKITALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4678999999999999999999999753
No 443
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=96.15 E-value=0.012 Score=47.45 Aligned_cols=21 Identities=24% Similarity=0.457 Sum_probs=19.5
Q ss_pred EEEEcCCcccHHHHHHHHHhh
Q 020775 35 LILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 35 IvI~GpTGSGKStLa~~LA~~ 55 (321)
|+|+|+||+|||||...|...
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999963
No 444
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.15 E-value=0.0031 Score=61.10 Aligned_cols=28 Identities=21% Similarity=0.510 Sum_probs=24.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
......++|+|+|||||||+...|+..+
T Consensus 145 v~~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 145 VRAHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred HHcCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4467889999999999999999999763
No 445
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.14 E-value=0.0039 Score=58.31 Aligned_cols=28 Identities=32% Similarity=0.401 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (271)
T PRK13638 24 FSLSPVTGLVGANGCGKSTLFMNLSGLL 51 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 5678899999999999999999999765
No 446
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.14 E-value=0.004 Score=63.61 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=26.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.+++..++|+||||||||||+..|+..+.
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 67899999999999999999999997753
No 447
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.14 E-value=0.0042 Score=57.29 Aligned_cols=28 Identities=25% Similarity=0.298 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 23 VAAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999999999999765
No 448
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.14 E-value=0.0044 Score=57.01 Aligned_cols=28 Identities=29% Similarity=0.320 Sum_probs=25.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 26 IPARQVTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5678899999999999999999999764
No 449
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.14 E-value=0.023 Score=61.75 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCE
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAE 59 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~e 59 (321)
-+..++|+||.|+||||+|+.||+.++++
T Consensus 37 l~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 37 LHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 45678999999999999999999999875
No 450
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.13 E-value=0.0046 Score=55.75 Aligned_cols=28 Identities=25% Similarity=0.385 Sum_probs=25.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 61 (214)
T PRK13543 34 VDAGEALLVQGDNGAGKTTLLRVLAGLL 61 (214)
T ss_pred ECCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 5678899999999999999999999865
No 451
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.0056 Score=59.98 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=31.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEe
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIIN 62 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIs 62 (321)
+..|+=|.+.||+|||||-||++.|.+.++.+|.
T Consensus 182 I~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIr 215 (406)
T COG1222 182 IDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIR 215 (406)
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccCceEEE
Confidence 6778899999999999999999999999988765
No 452
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=96.13 E-value=0.0042 Score=58.17 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 30 VPGGSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999999999999765
No 453
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=96.13 E-value=0.004 Score=57.28 Aligned_cols=27 Identities=37% Similarity=0.523 Sum_probs=24.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..++.+++|+||+|||||||...|+..
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 30 INKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 567899999999999999999999974
No 454
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=96.12 E-value=0.0036 Score=58.25 Aligned_cols=72 Identities=17% Similarity=0.224 Sum_probs=51.9
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC---CEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhh
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP---AEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQN 105 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~---~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~ 105 (321)
..++.++.|+||+|+||||+-..+...+. |.| .|+|-||+.-+|..--+.|+-..|-. ..+..+.|+-+
T Consensus 27 v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v-------~~~G~~it~l~p~~iar~Gi~RTFQ~-~rlF~~lTVlE 98 (250)
T COG0411 27 VRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV-------IFRGRDITGLPPHRIARLGIARTFQI-TRLFPGLTVLE 98 (250)
T ss_pred EcCCeEEEEECCCCCCceeeeeeecccccCCCceE-------EECCcccCCCCHHHHHhccceeeccc-ccccCCCcHHH
Confidence 46788999999999999999988887663 455 57788888777666667777654432 24445667666
Q ss_pred HHH
Q 020775 106 FCD 108 (321)
Q Consensus 106 f~~ 108 (321)
-..
T Consensus 99 Nv~ 101 (250)
T COG0411 99 NVA 101 (250)
T ss_pred HHH
Confidence 553
No 455
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.12 E-value=0.011 Score=60.57 Aligned_cols=99 Identities=14% Similarity=0.235 Sum_probs=58.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHh-----hcCCCc-ccccccCCCc---
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEE-----QCGIPH-HLLGIQHPNA--- 99 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E-----~~gvph-hll~~~~~~~--- 99 (321)
.+-|+=|.++||+|+|||-||+++|..-+.++..+-.-+ |.+|=+|-+.-+..+ ++..|. .|+|.+|.--
T Consensus 334 GKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSE-FdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR 412 (752)
T KOG0734|consen 334 GKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSE-FDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKR 412 (752)
T ss_pred CcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccc-hhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccC
Confidence 345677999999999999999999999887765542221 233333333222222 345554 3677665321
Q ss_pred -cccHhhHHHHHHHHHHHH------hhcCCcEEEEcCchH
Q 020775 100 -DFTAQNFCDMASFSIEST------LNKGKVPIIVGGSNS 132 (321)
Q Consensus 100 -~~~~~~f~~~a~~~i~~i------~~~g~~pIivGGt~~ 132 (321)
..+.+ | +.+.|.++ ..++.-.|+.|.|++
T Consensus 413 ~~~~~~-y---~kqTlNQLLvEmDGF~qNeGiIvigATNf 448 (752)
T KOG0734|consen 413 NPSDQH-Y---AKQTLNQLLVEMDGFKQNEGIIVIGATNF 448 (752)
T ss_pred CccHHH-H---HHHHHHHHHHHhcCcCcCCceEEEeccCC
Confidence 22222 3 33444433 356666777888876
No 456
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.12 E-value=0.0044 Score=58.03 Aligned_cols=28 Identities=25% Similarity=0.481 Sum_probs=25.7
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 47 i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~ 74 (269)
T cd03294 47 VREGEIFVIMGLSGSGKSTLLRCINRLI 74 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5678999999999999999999999875
No 457
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.12 E-value=0.0045 Score=57.56 Aligned_cols=28 Identities=32% Similarity=0.426 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999999999999765
No 458
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.12 E-value=0.0045 Score=56.96 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=24.9
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
...+.+++|+||+|||||||...|+..+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 25 IEQNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4578899999999999999999999753
No 459
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=96.11 E-value=0.0047 Score=57.22 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=25.8
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 55 (257)
T PRK10619 28 ANAGDVISIIGSSGSGKSTFLRCINFLE 55 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5688999999999999999999999875
No 460
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.11 E-value=0.0046 Score=58.27 Aligned_cols=28 Identities=32% Similarity=0.471 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~laG~~ 51 (272)
T PRK13547 24 IEPGRVTALLGRNGAGKSTLLKALAGDL 51 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999999999999865
No 461
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.11 E-value=0.0045 Score=57.14 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (254)
T PRK14273 30 ILKNSITALIGPSGCGKSTFLRTLNRMN 57 (254)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 5678999999999999999999999764
No 462
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.11 E-value=0.0045 Score=57.99 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 36 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 36 IPRGKVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 5688999999999999999999999763
No 463
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.11 E-value=0.0046 Score=49.56 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=20.2
Q ss_pred EEEEcCCcccHHHHHHHHHhhC
Q 020775 35 LILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 35 IvI~GpTGSGKStLa~~LA~~l 56 (321)
|+|+|++|||||||...|+...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999999764
No 464
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=96.11 E-value=0.0044 Score=57.99 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
...+.+++|+||+|||||||...|+..+
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 30 VPRGKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678899999999999999999999765
No 465
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.11 E-value=0.0048 Score=55.53 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHh
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMAT 54 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~ 54 (321)
..+.+++|+||+|+|||||.+.++.
T Consensus 23 ~~g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 23 EKKNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHH
Confidence 3458999999999999999999985
No 466
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.10 E-value=0.0042 Score=56.67 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 28 INQGEIVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 5678999999999999999999999764
No 467
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.10 E-value=0.0044 Score=57.61 Aligned_cols=28 Identities=25% Similarity=0.476 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 25 LRPGEVVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678899999999999999999999865
No 468
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.10 E-value=0.0045 Score=57.96 Aligned_cols=28 Identities=21% Similarity=0.392 Sum_probs=25.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (271)
T PRK13632 32 INEGEYVAILGHNGSGKSTISKILTGLL 59 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5678999999999999999999999875
No 469
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=96.09 E-value=0.0046 Score=56.88 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=24.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..++.+++|+||+|||||||...|+..
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 26 IEENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 467889999999999999999999974
No 470
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.09 E-value=0.0044 Score=58.21 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~ 57 (280)
T PRK13649 30 IEDGSYTAFIGHTGSGKSTIMQLLNGLH 57 (280)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678899999999999999999999865
No 471
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.09 E-value=0.0052 Score=58.56 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.7
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
+.++|.||+|||||++|..+++.+.
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999999874
No 472
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.08 E-value=0.018 Score=54.30 Aligned_cols=97 Identities=15% Similarity=0.199 Sum_probs=55.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC-----CCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccH
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF-----PAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTA 103 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l-----~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~ 103 (321)
..+..+|.|+||+|+|||||.-+|.+.+ ..-|+..|-=.-+.|=.|.-.+.+..+...-|--|+--.. ..=+.
T Consensus 26 ~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~a--tRG~l 103 (266)
T PF03308_consen 26 TGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMA--TRGSL 103 (266)
T ss_dssp TT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE-----SSH
T ss_pred cCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecC--cCCCC
Confidence 3466899999999999999999998876 3458888887778888888877777665443333332111 12233
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEE
Q 020775 104 QNFCDMASFSIESTLNKGKVPIIV 127 (321)
Q Consensus 104 ~~f~~~a~~~i~~i~~~g~~pIiv 127 (321)
+-.-+...+++.-+..-|-..|++
T Consensus 104 GGls~~t~~~v~ll~aaG~D~Iii 127 (266)
T PF03308_consen 104 GGLSRATRDAVRLLDAAGFDVIII 127 (266)
T ss_dssp HHHHHHHHHHHHHHHHTT-SEEEE
T ss_pred CCccHhHHHHHHHHHHcCCCEEEE
Confidence 333344444455455567666664
No 473
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.08 E-value=0.0037 Score=54.18 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=21.0
Q ss_pred EEEEEcCCcccHHHHHHHHHhhC
Q 020775 34 VLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l 56 (321)
++.|+|++|||||||+..|++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999875
No 474
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.0066 Score=61.67 Aligned_cols=38 Identities=26% Similarity=0.333 Sum_probs=33.8
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
...++.+.+.||+|+|||.||.++|...+..+|+.|.-
T Consensus 273 ~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~ 310 (494)
T COG0464 273 LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS 310 (494)
T ss_pred CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence 45677899999999999999999999999998887764
No 475
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.07 E-value=0.0051 Score=52.52 Aligned_cols=28 Identities=29% Similarity=0.466 Sum_probs=25.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|+|||||...|+..+
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~ 49 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLL 49 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4577899999999999999999999765
No 476
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=96.07 E-value=0.0049 Score=57.59 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 42 IPEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5678999999999999999999999764
No 477
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=96.07 E-value=0.0038 Score=54.28 Aligned_cols=30 Identities=17% Similarity=0.315 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEE
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEI 60 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~ei 60 (321)
.+.+.+|+||+|+||||+..+|.-.+++..
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ai~~~L~~~~ 47 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILEAIRYALGGQS 47 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHHHHHHHHHSS-
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 457999999999999999999988876654
No 478
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.07 E-value=0.0049 Score=51.04 Aligned_cols=24 Identities=21% Similarity=0.349 Sum_probs=21.4
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
...|+++|++|||||||...|+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999865
No 479
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=96.06 E-value=0.0045 Score=56.77 Aligned_cols=27 Identities=41% Similarity=0.601 Sum_probs=25.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..++.+++|+||+|||||||...|+..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (248)
T PRK09580 24 VRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence 567899999999999999999999986
No 480
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.06 E-value=0.057 Score=55.35 Aligned_cols=28 Identities=21% Similarity=0.414 Sum_probs=25.2
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCE
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAE 59 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~e 59 (321)
+..++++||.|+||||+|+.+|+.++++
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 5579999999999999999999998764
No 481
>PRK06526 transposase; Provisional
Probab=96.06 E-value=0.0046 Score=57.94 Aligned_cols=27 Identities=30% Similarity=0.631 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..+..++|+||+|||||.||..|+...
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHH
Confidence 456789999999999999999998753
No 482
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=96.06 E-value=0.0092 Score=54.02 Aligned_cols=28 Identities=29% Similarity=0.313 Sum_probs=25.1
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
++++..++++||+|+|||||.+.|....
T Consensus 25 i~~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 25 IPKGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred ecCceEEEEECCCCCCHHHHHHHHHhhh
Confidence 5688999999999999999999988764
No 483
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.05 E-value=0.0046 Score=53.20 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=20.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHhh
Q 020775 33 KVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
+-|+++||+|||||||+..|-..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCC
Confidence 46889999999999999998764
No 484
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=96.05 E-value=0.0073 Score=54.45 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=25.3
Q ss_pred ccCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 28 RRQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..+.+.+++|+||+|||||||...+|.-.
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~ 49 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFE 49 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhcc
Confidence 35677899999999999999999999753
No 485
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.05 E-value=0.0069 Score=56.21 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=25.8
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+|++|||||||...|+..+.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~ 58 (259)
T PRK14260 30 IYRNKVTAIIGPSGCGKSTFIKTLNRISE 58 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 56789999999999999999999998643
No 486
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.05 E-value=0.0052 Score=55.36 Aligned_cols=28 Identities=21% Similarity=0.436 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 24 IPTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 5678999999999999999999999765
No 487
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=96.04 E-value=0.0049 Score=58.72 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 16 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 16 VREGEVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678899999999999999999999765
No 488
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.04 E-value=0.0048 Score=58.35 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 34 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 61 (289)
T PRK13645 34 FKKNKVTCVIGTTGSGKSTMIQLTNGLI 61 (289)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5678899999999999999999999865
No 489
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=96.03 E-value=0.0052 Score=54.69 Aligned_cols=28 Identities=32% Similarity=0.469 Sum_probs=25.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678999999999999999999999865
No 490
>PRK09183 transposase/IS protein; Provisional
Probab=96.03 E-value=0.0051 Score=57.71 Aligned_cols=26 Identities=27% Similarity=0.699 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..+..++|+||+|||||+|+..|+..
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999765
No 491
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.03 E-value=0.0059 Score=54.08 Aligned_cols=37 Identities=30% Similarity=0.495 Sum_probs=26.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC-----CCEEEecCc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF-----PAEIINSDK 65 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l-----~~eiIsaDs 65 (321)
..++.-++|.||+|+|||.||.++++++ .+.+++.+.
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~ 85 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASD 85 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCc
Confidence 3567789999999999999999999753 344555444
No 492
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.03 E-value=0.03 Score=57.65 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=26.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCE
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAE 59 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~e 59 (321)
..+..++++||.|+||||+|+.||+.++++
T Consensus 36 ~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 36 YLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 345678999999999999999999999864
No 493
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=96.02 E-value=0.0054 Score=55.46 Aligned_cols=28 Identities=32% Similarity=0.388 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 23 VPKNSVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678899999999999999999999865
No 494
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=96.02 E-value=0.0053 Score=56.80 Aligned_cols=28 Identities=32% Similarity=0.395 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (255)
T PRK11231 25 LPTGKITALIGPNGCGKSTLLKCFARLL 52 (255)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 5678899999999999999999999764
No 495
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.02 E-value=0.0062 Score=55.14 Aligned_cols=30 Identities=17% Similarity=0.423 Sum_probs=26.9
Q ss_pred ccccCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 26 VSRRQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 26 ~~~~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
.++.+++.++.|.||+|||||+++..+|..
T Consensus 17 ~GGi~~g~i~~i~G~~GsGKT~l~~~la~~ 46 (225)
T PRK09361 17 GGGFERGTITQIYGPPGSGKTNICLQLAVE 46 (225)
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 366788999999999999999999999975
No 496
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.02 E-value=0.0054 Score=54.77 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=25.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+|++|||||||...|+..+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (201)
T cd03231 23 LAAGEALQVTGPNGSGKTTLLRILAGLS 50 (201)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5688999999999999999999999765
No 497
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.02 E-value=0.0053 Score=56.96 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=25.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+...
T Consensus 35 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 62 (258)
T PRK14268 35 IPKNSVTALIGPSGCGKSTFIRCLNRMN 62 (258)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5678899999999999999999999754
No 498
>PRK04296 thymidine kinase; Provisional
Probab=96.01 E-value=0.005 Score=54.86 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=23.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
+.+++++||+|+||||++..++.++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999886
No 499
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.01 E-value=0.0054 Score=55.02 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.+ +++|+||+|||||||...|+--+
T Consensus 22 ~g-~~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 22 PG-LTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred CC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 44 89999999999999999998654
No 500
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.00 E-value=0.0077 Score=56.85 Aligned_cols=41 Identities=34% Similarity=0.451 Sum_probs=33.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC---CEEEecCcceeecCccccC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP---AEIINSDKIQVYEGLDIVT 76 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~---~eiIsaDs~QvYkgl~I~T 76 (321)
+.++..+.|+|.+||||||+++.|.+-.. |+| .|+|.+|..
T Consensus 36 i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i-------~f~g~~i~~ 79 (268)
T COG4608 36 IKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEI-------LFEGKDITK 79 (268)
T ss_pred EcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceE-------EEcCcchhh
Confidence 56889999999999999999999998653 565 567776544
Done!