Query 020775
Match_columns 321
No_of_seqs 289 out of 1951
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 08:00:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020775.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/020775hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a8t_A Adenylate isopentenyltr 100.0 3.9E-72 1.3E-76 538.4 30.5 285 13-298 16-339 (339)
2 3eph_A TRNA isopentenyltransfe 100.0 8.5E-69 2.9E-73 525.5 21.8 256 32-302 2-333 (409)
3 3exa_A TRNA delta(2)-isopenten 100.0 1.7E-64 6E-69 480.8 26.6 220 31-265 2-291 (322)
4 3foz_A TRNA delta(2)-isopenten 100.0 3.2E-64 1.1E-68 478.3 26.4 223 30-266 8-300 (316)
5 3crm_A TRNA delta(2)-isopenten 100.0 6.6E-58 2.2E-62 437.8 26.1 220 31-264 4-304 (323)
6 3d3q_A TRNA delta(2)-isopenten 100.0 7.8E-55 2.7E-59 419.0 26.3 217 32-263 7-295 (340)
7 2ze6_A Isopentenyl transferase 100.0 1.8E-36 6.1E-41 279.3 18.6 213 33-249 2-224 (253)
8 2qmh_A HPR kinase/phosphorylas 99.5 1.5E-15 5.1E-20 135.8 0.9 73 30-109 32-111 (205)
9 3tau_A Guanylate kinase, GMP k 99.3 8.3E-14 2.8E-18 123.5 -1.6 125 29-171 5-142 (208)
10 1ex7_A Guanylate kinase; subst 99.3 1.2E-12 4.2E-17 115.5 5.3 124 33-171 2-136 (186)
11 3trf_A Shikimate kinase, SK; a 99.3 1.1E-12 3.6E-17 112.9 4.7 112 31-167 4-115 (185)
12 3vaa_A Shikimate kinase, SK; s 99.2 1E-11 3.6E-16 108.8 5.3 121 30-175 23-144 (199)
13 3ney_A 55 kDa erythrocyte memb 99.2 1E-11 3.5E-16 110.6 4.1 90 31-128 18-117 (197)
14 1ly1_A Polynucleotide kinase; 99.1 3.7E-10 1.3E-14 95.7 10.2 120 32-172 2-128 (181)
15 2qor_A Guanylate kinase; phosp 99.1 5.4E-11 1.9E-15 104.6 4.5 126 29-171 9-148 (204)
16 1kgd_A CASK, peripheral plasma 99.1 3.9E-11 1.3E-15 103.7 2.4 120 31-166 4-134 (180)
17 3t61_A Gluconokinase; PSI-biol 99.0 1.3E-09 4.4E-14 95.2 11.3 116 31-173 17-134 (202)
18 2rhm_A Putative kinase; P-loop 99.0 8.8E-10 3E-14 94.6 9.4 118 29-172 2-127 (193)
19 3tr0_A Guanylate kinase, GMP k 99.0 2.9E-09 9.8E-14 92.4 12.3 124 30-171 5-140 (205)
20 1qhx_A CPT, protein (chloramph 99.0 2.5E-09 8.5E-14 90.9 11.5 125 31-172 2-135 (178)
21 2c95_A Adenylate kinase 1; tra 99.0 1.2E-09 4.2E-14 94.0 9.5 126 29-171 6-134 (196)
22 2iyv_A Shikimate kinase, SK; t 99.0 2E-10 6.9E-15 98.6 4.0 113 32-171 2-115 (184)
23 1via_A Shikimate kinase; struc 99.0 2.2E-10 7.5E-15 97.9 4.2 108 33-170 5-113 (175)
24 1zuh_A Shikimate kinase; alpha 99.0 1.1E-09 3.9E-14 92.6 8.1 110 33-170 8-117 (168)
25 1knq_A Gluconate kinase; ALFA/ 99.0 5.4E-09 1.9E-13 88.8 11.9 115 31-171 7-125 (175)
26 3nwj_A ATSK2; P loop, shikimat 98.9 9.3E-10 3.2E-14 101.1 7.2 113 32-170 48-162 (250)
27 3iij_A Coilin-interacting nucl 98.9 4.2E-09 1.4E-13 90.1 10.6 110 30-171 9-118 (180)
28 3a4m_A L-seryl-tRNA(SEC) kinas 98.9 3.3E-09 1.1E-13 97.0 10.2 128 30-188 2-137 (260)
29 1e6c_A Shikimate kinase; phosp 98.9 1.7E-09 5.8E-14 91.4 7.2 111 33-170 3-116 (173)
30 4eun_A Thermoresistant glucoki 98.9 1.8E-08 6E-13 88.1 12.6 118 30-171 27-146 (200)
31 2p5t_B PEZT; postsegregational 98.9 2.4E-08 8.1E-13 90.9 13.2 129 29-175 29-162 (253)
32 2vli_A Antibiotic resistance p 98.9 4.9E-09 1.7E-13 89.3 8.1 119 31-174 4-129 (183)
33 1ukz_A Uridylate kinase; trans 98.9 2.4E-08 8.2E-13 86.8 12.5 126 31-171 14-142 (203)
34 1gvn_B Zeta; postsegregational 98.9 5.5E-09 1.9E-13 97.4 8.8 124 30-171 31-163 (287)
35 3zvl_A Bifunctional polynucleo 98.8 5.8E-09 2E-13 102.1 9.0 102 29-172 255-359 (416)
36 2pt5_A Shikimate kinase, SK; a 98.8 2E-09 6.8E-14 90.7 4.7 111 34-170 2-113 (168)
37 1kag_A SKI, shikimate kinase I 98.8 1.5E-09 5.3E-14 91.8 4.0 116 31-171 3-118 (173)
38 3kb2_A SPBC2 prophage-derived 98.8 1.6E-08 5.6E-13 84.8 9.5 34 33-66 2-35 (173)
39 4e22_A Cytidylate kinase; P-lo 98.8 3.9E-08 1.3E-12 89.5 12.6 40 27-66 22-61 (252)
40 3a00_A Guanylate kinase, GMP k 98.8 7.6E-09 2.6E-13 89.6 7.5 124 32-171 1-136 (186)
41 2bwj_A Adenylate kinase 5; pho 98.8 9.5E-09 3.2E-13 88.6 8.0 37 30-66 10-46 (199)
42 3lw7_A Adenylate kinase relate 98.8 2E-08 6.7E-13 83.8 9.7 33 33-66 2-34 (179)
43 1ltq_A Polynucleotide kinase; 98.8 2.2E-08 7.5E-13 92.5 10.8 117 32-172 2-128 (301)
44 1y63_A LMAJ004144AAA protein; 98.8 2.1E-08 7.3E-13 86.6 10.0 37 30-66 8-45 (184)
45 1uj2_A Uridine-cytidine kinase 98.8 6.1E-09 2.1E-13 94.5 6.3 52 19-72 8-70 (252)
46 1tev_A UMP-CMP kinase; ploop, 98.8 1.6E-08 5.5E-13 86.4 8.7 36 31-66 2-37 (196)
47 3lnc_A Guanylate kinase, GMP k 98.8 1.2E-08 3.9E-13 91.2 7.3 121 29-170 24-161 (231)
48 2yvu_A Probable adenylyl-sulfa 98.7 3.9E-08 1.3E-12 84.6 9.9 112 29-169 10-132 (186)
49 3cm0_A Adenylate kinase; ATP-b 98.7 1.4E-08 4.6E-13 86.9 6.9 36 31-66 3-38 (186)
50 3umf_A Adenylate kinase; rossm 98.7 1.8E-08 6.1E-13 90.8 7.9 40 27-66 24-63 (217)
51 1qf9_A UMP/CMP kinase, protein 98.7 2.5E-08 8.7E-13 85.0 8.2 36 31-66 5-40 (194)
52 2qt1_A Nicotinamide riboside k 98.7 9E-08 3.1E-12 83.7 11.8 40 27-66 16-56 (207)
53 1zd8_A GTP:AMP phosphotransfer 98.7 2.5E-08 8.4E-13 88.8 8.0 37 30-66 5-41 (227)
54 1kht_A Adenylate kinase; phosp 98.7 5.5E-08 1.9E-12 82.9 9.6 35 32-66 3-42 (192)
55 1nks_A Adenylate kinase; therm 98.7 6E-09 2E-13 89.0 2.9 33 33-65 2-39 (194)
56 1aky_A Adenylate kinase; ATP:A 98.7 3.9E-08 1.3E-12 86.9 8.2 37 30-66 2-38 (220)
57 3uie_A Adenylyl-sulfate kinase 98.7 1.2E-07 4.2E-12 82.7 11.3 109 29-167 22-140 (200)
58 3fdi_A Uncharacterized protein 98.7 1.3E-07 4.3E-12 83.7 11.4 125 31-170 5-137 (201)
59 2cdn_A Adenylate kinase; phosp 98.7 2.8E-08 9.7E-13 86.5 6.6 37 30-66 18-54 (201)
60 1uf9_A TT1252 protein; P-loop, 98.7 5.1E-08 1.7E-12 84.2 8.1 36 30-66 6-41 (203)
61 1zak_A Adenylate kinase; ATP:A 98.7 2.4E-08 8.3E-13 88.4 6.1 36 31-66 4-39 (222)
62 3be4_A Adenylate kinase; malar 98.7 7.3E-08 2.5E-12 85.3 9.1 36 31-66 4-39 (217)
63 1cke_A CK, MSSA, protein (cyti 98.6 5.5E-08 1.9E-12 85.7 7.3 36 31-66 4-39 (227)
64 1s96_A Guanylate kinase, GMP k 98.6 4.7E-08 1.6E-12 87.8 6.9 129 29-171 13-151 (219)
65 2f6r_A COA synthase, bifunctio 98.6 2.5E-08 8.5E-13 92.5 5.2 36 30-66 73-108 (281)
66 3hdt_A Putative kinase; struct 98.6 7.6E-08 2.6E-12 86.9 8.2 142 31-187 13-173 (223)
67 1vht_A Dephospho-COA kinase; s 98.6 1.9E-07 6.5E-12 82.2 9.7 36 30-66 2-37 (218)
68 2pez_A Bifunctional 3'-phospho 98.6 6.2E-08 2.1E-12 82.8 6.3 117 30-170 3-125 (179)
69 3tlx_A Adenylate kinase 2; str 98.6 6.3E-08 2.2E-12 87.7 6.3 38 29-66 26-63 (243)
70 2pbr_A DTMP kinase, thymidylat 98.5 6.1E-08 2.1E-12 82.9 5.3 32 34-65 2-36 (195)
71 2xb4_A Adenylate kinase; ATP-b 98.5 2.6E-07 8.8E-12 82.3 9.5 33 34-66 2-34 (223)
72 3dl0_A Adenylate kinase; phosp 98.5 1.4E-07 4.7E-12 82.9 6.9 33 34-66 2-34 (216)
73 3fb4_A Adenylate kinase; psych 98.5 1.2E-07 4.1E-12 83.2 6.4 33 34-66 2-34 (216)
74 2z0h_A DTMP kinase, thymidylat 98.5 5.5E-08 1.9E-12 83.6 3.1 31 34-64 2-35 (197)
75 1m7g_A Adenylylsulfate kinase; 98.5 6.2E-07 2.1E-11 78.8 9.9 115 29-167 22-149 (211)
76 1a7j_A Phosphoribulokinase; tr 98.4 1.7E-07 5.8E-12 87.5 6.1 39 30-70 3-46 (290)
77 1ak2_A Adenylate kinase isoenz 98.4 8.2E-07 2.8E-11 79.4 10.2 36 31-66 15-50 (233)
78 1nn5_A Similar to deoxythymidy 98.4 1.3E-07 4.4E-12 82.4 4.5 30 30-59 7-36 (215)
79 2axn_A 6-phosphofructo-2-kinas 98.4 1.2E-06 4.1E-11 88.3 11.2 38 29-66 32-74 (520)
80 1e4v_A Adenylate kinase; trans 98.4 9.3E-07 3.2E-11 77.7 8.9 33 34-66 2-34 (214)
81 1lvg_A Guanylate kinase, GMP k 98.4 2.2E-07 7.4E-12 81.5 4.8 56 30-93 2-57 (198)
82 2h92_A Cytidylate kinase; ross 98.4 2.2E-06 7.5E-11 75.2 11.1 36 31-66 2-37 (219)
83 2bdt_A BH3686; alpha-beta prot 98.4 1E-06 3.5E-11 75.6 8.8 35 32-66 2-37 (189)
84 2j41_A Guanylate kinase; GMP, 98.4 1.4E-06 4.8E-11 75.2 9.7 27 30-56 4-30 (207)
85 3r20_A Cytidylate kinase; stru 98.4 1.5E-06 5.1E-11 79.0 10.2 41 30-72 7-47 (233)
86 2jaq_A Deoxyguanosine kinase; 98.4 7.7E-07 2.6E-11 76.5 7.8 29 34-62 2-30 (205)
87 1kjw_A Postsynaptic density pr 98.4 1.7E-07 5.9E-12 88.0 3.6 122 30-171 103-236 (295)
88 2plr_A DTMP kinase, probable t 98.3 2.3E-06 8E-11 73.9 10.2 28 31-58 3-30 (213)
89 2wwf_A Thymidilate kinase, put 98.3 2E-07 6.7E-12 81.1 3.2 35 30-64 8-42 (212)
90 1x6v_B Bifunctional 3'-phospho 98.3 1.9E-06 6.5E-11 88.7 10.8 115 31-170 51-172 (630)
91 3sr0_A Adenylate kinase; phosp 98.3 1.7E-06 5.8E-11 77.0 9.0 33 34-66 2-34 (206)
92 1z6g_A Guanylate kinase; struc 98.3 3.5E-06 1.2E-10 74.9 10.3 56 29-92 20-75 (218)
93 4eaq_A DTMP kinase, thymidylat 98.2 4.7E-06 1.6E-10 74.9 10.4 29 29-57 23-51 (229)
94 3gmt_A Adenylate kinase; ssgci 98.2 9E-07 3.1E-11 80.4 4.9 34 33-66 9-42 (230)
95 3tvt_A Disks large 1 tumor sup 98.1 7.2E-07 2.5E-11 83.7 2.9 123 30-171 98-232 (292)
96 1sq5_A Pantothenate kinase; P- 98.1 4.7E-06 1.6E-10 78.1 8.0 37 30-66 78-121 (308)
97 3tqc_A Pantothenate kinase; bi 98.1 2.5E-05 8.5E-10 74.2 11.5 37 30-66 90-133 (321)
98 1znw_A Guanylate kinase, GMP k 98.1 3.1E-06 1E-10 74.2 4.9 61 22-91 9-70 (207)
99 2xkx_A Disks large homolog 4; 98.0 7.7E-06 2.6E-10 85.4 7.9 121 31-171 530-662 (721)
100 2grj_A Dephospho-COA kinase; T 98.0 2.2E-06 7.6E-11 75.3 2.8 35 32-66 12-46 (192)
101 1gtv_A TMK, thymidylate kinase 98.0 9.5E-07 3.2E-11 76.9 0.1 25 33-57 1-25 (214)
102 1jjv_A Dephospho-COA kinase; P 98.0 3.1E-06 1E-10 73.6 3.1 33 33-66 3-35 (206)
103 3ake_A Cytidylate kinase; CMP 98.0 2.7E-06 9.1E-11 73.5 2.7 34 33-66 3-36 (208)
104 2if2_A Dephospho-COA kinase; a 98.0 3.5E-06 1.2E-10 73.0 3.2 33 33-66 2-34 (204)
105 4i1u_A Dephospho-COA kinase; s 97.9 1E-05 3.5E-10 72.4 6.2 33 33-66 10-42 (210)
106 1zp6_A Hypothetical protein AT 97.9 6.1E-06 2.1E-10 70.5 4.0 38 29-66 6-45 (191)
107 3lv8_A DTMP kinase, thymidylat 97.9 5.6E-06 1.9E-10 75.2 3.6 29 29-57 24-52 (236)
108 3asz_A Uridine kinase; cytidin 97.9 6.1E-06 2.1E-10 71.9 3.6 37 30-66 4-42 (211)
109 3v9p_A DTMP kinase, thymidylat 97.9 3.1E-06 1.1E-10 76.5 1.5 136 29-171 22-173 (227)
110 4edh_A DTMP kinase, thymidylat 97.9 4.2E-06 1.4E-10 74.7 2.3 28 30-57 4-31 (213)
111 2v54_A DTMP kinase, thymidylat 97.9 7.7E-06 2.6E-10 70.5 3.7 35 30-64 2-37 (204)
112 3cr8_A Sulfate adenylyltranfer 97.8 3.4E-05 1.1E-09 78.3 8.7 29 29-57 366-394 (552)
113 2gks_A Bifunctional SAT/APS ki 97.8 9.3E-06 3.2E-10 82.3 4.6 107 31-168 371-488 (546)
114 2bbw_A Adenylate kinase 4, AK4 97.8 5.6E-06 1.9E-10 74.4 2.2 37 30-66 25-61 (246)
115 1m8p_A Sulfate adenylyltransfe 97.8 3.7E-05 1.3E-09 78.3 8.4 105 30-167 394-513 (573)
116 1p5z_B DCK, deoxycytidine kina 97.8 8.2E-06 2.8E-10 74.1 2.9 52 11-62 2-55 (263)
117 4tmk_A Protein (thymidylate ki 97.8 1.9E-05 6.5E-10 70.5 5.0 27 31-57 2-28 (213)
118 4gp7_A Metallophosphoesterase; 97.8 5.1E-05 1.8E-09 64.6 7.3 34 30-65 7-40 (171)
119 1q3t_A Cytidylate kinase; nucl 97.8 1.1E-05 3.9E-10 71.9 3.2 37 30-66 14-50 (236)
120 2jeo_A Uridine-cytidine kinase 97.7 1.8E-05 6.1E-10 71.2 3.8 43 29-73 22-74 (245)
121 4hlc_A DTMP kinase, thymidylat 97.7 5.4E-05 1.9E-09 67.0 6.7 26 32-57 2-27 (205)
122 3c8u_A Fructokinase; YP_612366 97.6 2.2E-05 7.4E-10 68.8 3.2 37 30-66 20-61 (208)
123 1c9k_A COBU, adenosylcobinamid 97.6 6.5E-06 2.2E-10 72.1 -1.5 89 34-139 1-91 (180)
124 3eie_A Vacuolar protein sortin 97.5 0.00042 1.4E-08 64.7 10.2 36 30-65 49-84 (322)
125 1bif_A 6-phosphofructo-2-kinas 97.5 0.00029 9.8E-09 69.6 9.4 28 30-57 37-64 (469)
126 3ld9_A DTMP kinase, thymidylat 97.5 9.1E-05 3.1E-09 66.7 4.9 29 30-58 19-47 (223)
127 3syl_A Protein CBBX; photosynt 97.4 0.00015 5E-09 66.5 5.9 26 31-56 66-91 (309)
128 2kjq_A DNAA-related protein; s 97.4 0.00032 1.1E-08 58.7 7.0 26 31-56 35-60 (149)
129 3t15_A Ribulose bisphosphate c 97.4 7E-05 2.4E-09 69.4 3.2 37 28-64 32-68 (293)
130 3tsz_A Tight junction protein 97.4 0.00039 1.3E-08 67.6 8.2 99 30-170 230-330 (391)
131 1d2n_A N-ethylmaleimide-sensit 97.3 0.00088 3E-08 60.6 9.5 34 30-63 62-95 (272)
132 1rz3_A Hypothetical protein rb 97.3 0.00013 4.3E-09 63.6 3.6 37 30-66 20-61 (201)
133 1odf_A YGR205W, hypothetical 3 97.3 0.00013 4.5E-09 68.0 3.6 38 29-66 28-73 (290)
134 3cf0_A Transitional endoplasmi 97.3 0.00022 7.7E-09 66.0 5.0 37 29-65 46-82 (301)
135 2qp9_X Vacuolar protein sortin 97.3 0.0002 6.9E-09 68.1 4.8 35 31-65 83-117 (355)
136 2p65_A Hypothetical protein PF 97.2 0.0002 6.9E-09 59.6 4.0 26 31-56 42-67 (187)
137 1tue_A Replication protein E1; 97.2 0.00019 6.6E-09 64.2 3.8 36 29-64 55-90 (212)
138 3h4m_A Proteasome-activating n 97.2 0.00026 9.1E-09 64.1 4.9 36 30-65 49-84 (285)
139 1lv7_A FTSH; alpha/beta domain 97.2 0.00021 7.3E-09 64.0 4.0 35 31-65 44-78 (257)
140 2qz4_A Paraplegin; AAA+, SPG7, 97.2 0.0002 6.9E-09 63.8 3.7 34 30-63 37-70 (262)
141 2v9p_A Replication protein E1; 97.2 0.00024 8.3E-09 66.9 4.2 34 29-62 123-156 (305)
142 1jbk_A CLPB protein; beta barr 97.2 0.0003 1E-08 58.4 4.3 26 31-56 42-67 (195)
143 3b9p_A CG5977-PA, isoform A; A 97.2 0.00029 9.9E-09 64.3 4.5 33 31-63 53-85 (297)
144 3shw_A Tight junction protein 97.1 0.00071 2.4E-08 67.3 7.3 96 30-166 222-319 (468)
145 3ec2_A DNA replication protein 97.1 0.00016 5.5E-09 61.3 2.3 27 30-56 36-62 (180)
146 3hws_A ATP-dependent CLP prote 97.1 0.00027 9.3E-09 67.0 3.7 36 31-66 50-85 (363)
147 1svm_A Large T antigen; AAA+ f 97.1 0.00035 1.2E-08 67.6 4.3 35 29-63 166-200 (377)
148 2ehv_A Hypothetical protein PH 97.0 0.00029 9.8E-09 62.1 3.1 27 27-53 25-51 (251)
149 4b4t_K 26S protease regulatory 97.0 0.00039 1.3E-08 68.4 4.1 38 29-66 203-240 (428)
150 3bos_A Putative DNA replicatio 97.0 0.00072 2.4E-08 58.7 5.4 35 31-65 51-90 (242)
151 1um8_A ATP-dependent CLP prote 97.0 0.00036 1.2E-08 66.3 3.7 35 31-65 71-105 (376)
152 1ofh_A ATP-dependent HSL prote 97.0 0.00032 1.1E-08 63.8 3.1 34 31-64 49-82 (310)
153 4b4t_M 26S protease regulatory 97.0 0.00043 1.5E-08 68.2 4.1 37 29-65 212-248 (434)
154 4a74_A DNA repair and recombin 97.0 0.00036 1.2E-08 60.7 3.0 29 27-55 20-48 (231)
155 4b4t_L 26S protease subunit RP 97.0 0.00047 1.6E-08 68.0 4.1 37 29-65 212-248 (437)
156 2vp4_A Deoxynucleoside kinase; 96.9 0.00037 1.3E-08 62.0 3.0 30 29-59 17-46 (230)
157 1ixz_A ATP-dependent metallopr 96.9 0.00044 1.5E-08 61.8 3.5 32 33-64 50-81 (254)
158 3aez_A Pantothenate kinase; tr 96.9 0.00045 1.6E-08 65.0 3.7 38 29-66 87-131 (312)
159 2ocp_A DGK, deoxyguanosine kin 96.9 0.00066 2.2E-08 60.5 4.5 28 31-58 1-28 (241)
160 1htw_A HI0065; nucleotide-bind 96.9 0.00056 1.9E-08 58.0 3.9 28 29-56 30-57 (158)
161 2x8a_A Nuclear valosin-contain 96.9 0.00053 1.8E-08 63.0 3.9 31 33-63 45-75 (274)
162 4b4t_J 26S protease regulatory 96.9 0.00047 1.6E-08 67.4 3.7 37 29-65 179-215 (405)
163 2eyu_A Twitching motility prot 96.9 0.00051 1.7E-08 62.9 3.7 28 29-56 22-49 (261)
164 1xwi_A SKD1 protein; VPS4B, AA 96.9 0.00089 3E-08 62.8 5.1 33 30-62 43-76 (322)
165 3d8b_A Fidgetin-like protein 1 96.9 0.00074 2.5E-08 64.1 4.5 35 30-64 115-149 (357)
166 1g8f_A Sulfate adenylyltransfe 96.9 0.00049 1.7E-08 69.2 3.4 28 31-58 394-421 (511)
167 3tif_A Uncharacterized ABC tra 96.9 0.0005 1.7E-08 61.9 3.1 29 29-57 28-56 (235)
168 1ye8_A Protein THEP1, hypothet 96.8 0.00047 1.6E-08 59.4 2.6 25 34-58 2-26 (178)
169 3tqf_A HPR(Ser) kinase; transf 96.8 0.00028 9.5E-09 61.6 1.1 40 31-71 15-54 (181)
170 2cvh_A DNA repair and recombin 96.8 0.0007 2.4E-08 58.5 3.7 28 27-54 15-42 (220)
171 1sxj_A Activator 1 95 kDa subu 96.8 0.00088 3E-08 66.9 4.9 36 31-66 76-111 (516)
172 3pfi_A Holliday junction ATP-d 96.8 0.00068 2.3E-08 63.0 3.8 33 31-63 54-86 (338)
173 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.00065 2.2E-08 58.8 3.3 30 27-56 18-47 (235)
174 1g41_A Heat shock protein HSLU 96.8 0.00066 2.3E-08 67.1 3.7 35 31-65 49-83 (444)
175 3vfd_A Spastin; ATPase, microt 96.8 0.001 3.5E-08 63.6 4.9 35 31-65 147-181 (389)
176 2r62_A Cell division protease 96.8 0.00026 9.1E-09 63.6 0.7 33 32-64 44-76 (268)
177 1iy2_A ATP-dependent metallopr 96.8 0.00071 2.4E-08 61.5 3.5 31 34-64 75-105 (278)
178 3n70_A Transport activator; si 96.8 0.00065 2.2E-08 55.9 3.0 27 30-56 22-48 (145)
179 1in4_A RUVB, holliday junction 96.8 0.00067 2.3E-08 63.8 3.4 29 32-60 51-79 (334)
180 3hjn_A DTMP kinase, thymidylat 96.8 0.0018 6E-08 56.7 5.9 23 34-56 2-24 (197)
181 4b4t_H 26S protease regulatory 96.8 0.0007 2.4E-08 67.3 3.6 37 29-65 240-276 (467)
182 1nlf_A Regulatory protein REPA 96.7 0.0009 3.1E-08 61.0 4.0 30 26-55 24-53 (279)
183 4b4t_I 26S protease regulatory 96.7 0.00089 3.1E-08 66.0 4.2 37 29-65 213-249 (437)
184 2pcj_A ABC transporter, lipopr 96.7 0.00062 2.1E-08 60.8 2.6 28 29-56 27-54 (224)
185 2cbz_A Multidrug resistance-as 96.7 0.00074 2.5E-08 60.8 3.1 28 29-56 28-55 (237)
186 1n0w_A DNA repair protein RAD5 96.7 0.00077 2.6E-08 59.1 3.1 29 27-55 19-47 (243)
187 1b0u_A Histidine permease; ABC 96.7 0.0008 2.7E-08 61.6 3.1 29 29-57 29-57 (262)
188 3gfo_A Cobalt import ATP-bindi 96.7 0.00073 2.5E-08 62.5 2.7 28 29-56 31-58 (275)
189 1mv5_A LMRA, multidrug resista 96.6 0.00087 3E-08 60.5 3.1 29 29-57 25-53 (243)
190 3b9q_A Chloroplast SRP recepto 96.6 0.0009 3.1E-08 62.6 3.3 28 29-56 97-124 (302)
191 2w58_A DNAI, primosome compone 96.6 0.001 3.5E-08 57.1 3.4 24 33-56 55-78 (202)
192 4g1u_C Hemin import ATP-bindin 96.6 0.00077 2.6E-08 61.9 2.7 28 29-56 34-61 (266)
193 1xjc_A MOBB protein homolog; s 96.6 0.0016 5.6E-08 56.1 4.6 26 31-56 3-28 (169)
194 3pxi_A Negative regulator of g 96.6 0.0038 1.3E-07 65.0 8.3 23 34-56 523-545 (758)
195 3co5_A Putative two-component 96.6 0.00061 2.1E-08 56.1 1.6 32 31-63 26-57 (143)
196 2pze_A Cystic fibrosis transme 96.6 0.00094 3.2E-08 59.8 3.0 29 29-57 31-59 (229)
197 1rj9_A FTSY, signal recognitio 96.6 0.00099 3.4E-08 62.4 3.2 26 31-56 101-126 (304)
198 2f1r_A Molybdopterin-guanine d 96.6 0.00078 2.7E-08 57.9 2.3 24 33-56 3-26 (171)
199 2olj_A Amino acid ABC transpor 96.6 0.00098 3.4E-08 61.2 3.1 29 29-57 47-75 (263)
200 1ji0_A ABC transporter; ATP bi 96.6 0.00089 3E-08 60.4 2.7 28 29-56 29-56 (240)
201 1vma_A Cell division protein F 96.6 0.0014 4.6E-08 61.6 4.1 27 30-56 102-128 (306)
202 3tmk_A Thymidylate kinase; pho 96.6 0.0011 3.9E-08 59.1 3.4 29 30-58 3-31 (216)
203 2c9o_A RUVB-like 1; hexameric 96.6 0.001 3.5E-08 65.3 3.4 38 31-68 62-101 (456)
204 1g6h_A High-affinity branched- 96.6 0.00089 3E-08 61.0 2.7 29 29-57 30-58 (257)
205 2ff7_A Alpha-hemolysin translo 96.6 0.00092 3.1E-08 60.6 2.7 29 29-57 32-60 (247)
206 2dr3_A UPF0273 protein PH0284; 96.6 0.0011 3.9E-08 58.0 3.3 29 27-55 18-46 (247)
207 2zu0_C Probable ATP-dependent 96.6 0.0012 4E-08 60.6 3.4 27 29-55 43-69 (267)
208 2d2e_A SUFC protein; ABC-ATPas 96.6 0.0011 3.6E-08 60.2 3.1 27 29-55 26-52 (250)
209 2ghi_A Transport protein; mult 96.5 0.0011 3.7E-08 60.6 3.1 29 29-57 43-71 (260)
210 2zan_A Vacuolar protein sortin 96.5 0.0021 7.2E-08 63.0 5.4 35 30-64 165-200 (444)
211 1vpl_A ABC transporter, ATP-bi 96.5 0.0011 3.7E-08 60.6 3.1 29 29-57 38-66 (256)
212 2gza_A Type IV secretion syste 96.5 0.0011 3.7E-08 63.4 3.2 29 29-57 172-200 (361)
213 1njg_A DNA polymerase III subu 96.5 0.0011 3.8E-08 56.7 3.0 26 32-57 45-70 (250)
214 2onk_A Molybdate/tungstate ABC 96.5 0.0012 4.1E-08 59.7 3.3 28 29-57 22-49 (240)
215 2ixe_A Antigen peptide transpo 96.5 0.0011 3.9E-08 60.9 3.1 29 29-57 42-70 (271)
216 1sgw_A Putative ABC transporte 96.5 0.00088 3E-08 59.6 2.3 29 29-57 32-60 (214)
217 2yz2_A Putative ABC transporte 96.5 0.0012 4E-08 60.5 3.1 29 29-57 30-58 (266)
218 4fcw_A Chaperone protein CLPB; 96.5 0.0011 3.9E-08 60.5 3.0 24 33-56 48-71 (311)
219 3dm5_A SRP54, signal recogniti 96.5 0.0069 2.4E-07 59.8 8.8 35 31-65 99-138 (443)
220 3nh6_A ATP-binding cassette SU 96.5 0.0012 4E-08 62.1 3.0 29 29-57 77-105 (306)
221 3u61_B DNA polymerase accessor 96.5 0.0017 5.7E-08 60.1 3.9 35 30-64 46-80 (324)
222 1hqc_A RUVB; extended AAA-ATPa 96.5 0.001 3.5E-08 61.1 2.4 30 31-60 37-66 (324)
223 3e70_C DPA, signal recognition 96.5 0.0013 4.4E-08 62.4 3.2 27 30-56 127-153 (328)
224 3b85_A Phosphate starvation-in 96.5 0.0012 4E-08 58.5 2.6 27 29-55 19-45 (208)
225 1np6_A Molybdopterin-guanine d 96.5 0.0014 4.9E-08 56.5 3.1 26 31-56 5-30 (174)
226 2qi9_C Vitamin B12 import ATP- 96.5 0.0012 4.1E-08 60.1 2.7 29 29-57 23-51 (249)
227 2ewv_A Twitching motility prot 96.4 0.0014 4.7E-08 63.0 3.3 28 29-56 133-160 (372)
228 3kta_A Chromosome segregation 96.4 0.0018 6.2E-08 54.6 3.7 26 33-58 27-52 (182)
229 2ihy_A ABC transporter, ATP-bi 96.4 0.0012 4.1E-08 61.1 2.7 29 29-57 44-72 (279)
230 1l8q_A Chromosomal replication 96.4 0.0013 4.4E-08 61.0 2.9 26 31-56 36-61 (324)
231 2v1u_A Cell division control p 96.4 0.0013 4.3E-08 61.4 2.8 27 30-56 42-68 (387)
232 2og2_A Putative signal recogni 96.4 0.0015 5.1E-08 62.8 3.3 28 29-56 154-181 (359)
233 2qby_B CDC6 homolog 3, cell di 96.4 0.0018 6.2E-08 60.7 3.8 26 31-56 44-69 (384)
234 2nq2_C Hypothetical ABC transp 96.4 0.0013 4.4E-08 59.9 2.7 29 29-57 28-56 (253)
235 2qby_A CDC6 homolog 1, cell di 96.4 0.0016 5.4E-08 60.6 3.4 27 30-56 43-69 (386)
236 2chg_A Replication factor C sm 96.4 0.0014 4.8E-08 55.6 2.8 24 33-56 39-62 (226)
237 2px0_A Flagellar biosynthesis 96.4 0.0016 5.6E-08 60.6 3.2 35 31-65 104-144 (296)
238 3jvv_A Twitching mobility prot 96.4 0.0019 6.4E-08 61.9 3.6 27 30-56 121-147 (356)
239 1cr0_A DNA primase/helicase; R 96.4 0.0019 6.5E-08 59.1 3.5 30 27-56 30-59 (296)
240 2i3b_A HCR-ntpase, human cance 96.3 0.0015 5.2E-08 56.9 2.6 24 33-56 2-25 (189)
241 3hu3_A Transitional endoplasmi 96.3 0.0027 9.2E-08 63.3 4.7 35 30-64 236-270 (489)
242 1p9r_A General secretion pathw 96.3 0.0018 6.3E-08 63.4 3.4 28 30-57 165-192 (418)
243 3m6a_A ATP-dependent protease 96.3 0.0023 8E-08 64.4 4.2 30 31-60 107-136 (543)
244 3pvs_A Replication-associated 96.3 0.0027 9.4E-08 62.5 4.6 31 33-63 51-81 (447)
245 1fnn_A CDC6P, cell division co 96.3 0.0022 7.5E-08 60.0 3.7 23 34-56 46-68 (389)
246 2orw_A Thymidine kinase; TMTK, 96.3 0.002 6.9E-08 55.6 3.0 26 31-56 2-27 (184)
247 2ce7_A Cell division protein F 96.3 0.0022 7.6E-08 63.8 3.7 33 31-63 48-80 (476)
248 3fvq_A Fe(3+) IONS import ATP- 96.3 0.0021 7.1E-08 61.8 3.3 28 29-56 27-54 (359)
249 2r44_A Uncharacterized protein 96.3 0.0023 8E-08 59.3 3.6 30 32-61 46-75 (331)
250 3uk6_A RUVB-like 2; hexameric 96.3 0.0019 6.5E-08 60.5 3.0 27 32-58 70-96 (368)
251 2bbs_A Cystic fibrosis transme 96.3 0.0019 6.6E-08 60.1 3.0 29 29-57 61-89 (290)
252 3p32_A Probable GTPase RV1496/ 96.3 0.016 5.3E-07 55.0 9.4 42 30-71 77-123 (355)
253 2pt7_A CAG-ALFA; ATPase, prote 96.3 0.0018 6E-08 61.3 2.7 29 29-57 168-196 (330)
254 1lw7_A Transcriptional regulat 96.2 0.0023 7.9E-08 60.8 3.6 27 32-58 170-196 (365)
255 3cf2_A TER ATPase, transitiona 96.2 0.0029 1E-07 66.8 4.6 37 29-65 235-271 (806)
256 1zu4_A FTSY; GTPase, signal re 96.2 0.0032 1.1E-07 59.4 4.3 36 30-65 103-143 (320)
257 1pzn_A RAD51, DNA repair and r 96.2 0.0027 9.2E-08 60.4 3.8 30 27-56 126-155 (349)
258 2bjv_A PSP operon transcriptio 96.2 0.0028 9.7E-08 56.8 3.7 27 31-57 28-54 (265)
259 3te6_A Regulatory protein SIR3 96.2 0.0026 8.8E-08 60.2 3.5 28 29-56 42-69 (318)
260 2zts_A Putative uncharacterize 96.2 0.0027 9.3E-08 55.6 3.4 29 27-55 25-53 (251)
261 3kl4_A SRP54, signal recogniti 96.2 0.0026 8.9E-08 62.6 3.6 35 31-65 96-135 (433)
262 2yyz_A Sugar ABC transporter, 96.2 0.0026 8.7E-08 61.2 3.4 29 29-57 26-54 (359)
263 3d31_A Sulfate/molybdate ABC t 96.2 0.0023 7.9E-08 61.2 3.1 29 29-57 23-51 (348)
264 3rlf_A Maltose/maltodextrin im 96.2 0.0025 8.7E-08 61.7 3.4 29 29-57 26-54 (381)
265 1qvr_A CLPB protein; coiled co 96.2 0.017 5.6E-07 61.1 9.9 35 31-65 190-234 (854)
266 1ypw_A Transitional endoplasmi 96.1 0.003 1E-07 66.6 4.2 36 29-64 235-270 (806)
267 3tui_C Methionine import ATP-b 96.1 0.0026 9.1E-08 61.3 3.4 28 29-56 51-78 (366)
268 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0013 4.4E-08 63.3 1.2 28 33-60 25-52 (359)
269 2it1_A 362AA long hypothetical 96.1 0.0027 9.1E-08 61.1 3.4 29 29-57 26-54 (362)
270 1oxx_K GLCV, glucose, ABC tran 96.1 0.0023 7.9E-08 61.3 2.9 28 29-56 28-55 (353)
271 2pjz_A Hypothetical protein ST 96.1 0.0025 8.4E-08 58.5 3.0 27 29-56 28-54 (263)
272 1z47_A CYSA, putative ABC-tran 96.1 0.0025 8.4E-08 61.2 3.1 29 29-57 38-66 (355)
273 1v43_A Sugar-binding transport 96.1 0.0028 9.7E-08 61.1 3.4 29 29-57 34-62 (372)
274 2yhs_A FTSY, cell division pro 96.1 0.0027 9.2E-08 63.6 3.3 28 29-56 290-317 (503)
275 2oap_1 GSPE-2, type II secreti 96.1 0.0028 9.6E-08 63.6 3.3 29 29-57 257-285 (511)
276 1nij_A Hypothetical protein YJ 96.1 0.0035 1.2E-07 58.7 3.7 26 31-56 3-28 (318)
277 3pxg_A Negative regulator of g 96.1 0.0032 1.1E-07 62.2 3.6 27 30-56 199-225 (468)
278 3czq_A Putative polyphosphate 96.0 0.026 8.9E-07 53.0 9.5 113 29-173 83-214 (304)
279 1g29_1 MALK, maltose transport 96.0 0.0029 9.9E-08 61.0 3.1 29 29-57 26-54 (372)
280 2dhr_A FTSH; AAA+ protein, hex 96.0 0.0042 1.4E-07 62.2 4.3 33 32-64 64-96 (499)
281 1ko7_A HPR kinase/phosphatase; 96.0 0.0066 2.2E-07 57.4 5.2 39 31-70 143-181 (314)
282 3gd7_A Fusion complex of cysti 96.0 0.0035 1.2E-07 60.9 3.3 28 29-56 44-71 (390)
283 2qgz_A Helicase loader, putati 95.9 0.0036 1.2E-07 58.4 3.1 25 32-56 152-176 (308)
284 2wsm_A Hydrogenase expression/ 95.9 0.0068 2.3E-07 52.3 4.6 35 31-65 29-67 (221)
285 1dek_A Deoxynucleoside monopho 95.9 0.0049 1.7E-07 56.0 3.6 32 33-64 2-33 (241)
286 1xx6_A Thymidine kinase; NESG, 95.8 0.0046 1.6E-07 54.1 3.3 27 30-56 6-32 (191)
287 1g8p_A Magnesium-chelatase 38 95.8 0.0032 1.1E-07 58.3 2.4 26 33-58 46-71 (350)
288 1f2t_A RAD50 ABC-ATPase; DNA d 95.8 0.005 1.7E-07 51.3 3.3 25 32-56 23-47 (149)
289 2v3c_C SRP54, signal recogniti 95.8 0.0048 1.6E-07 60.6 3.6 35 31-65 98-137 (432)
290 3hr8_A Protein RECA; alpha and 95.8 0.0051 1.8E-07 59.0 3.6 30 27-56 56-85 (356)
291 2npi_A Protein CLP1; CLP1-PCF1 95.8 0.0043 1.5E-07 61.4 3.1 28 29-56 135-162 (460)
292 1jr3_A DNA polymerase III subu 95.7 0.0047 1.6E-07 57.6 3.1 28 31-58 37-64 (373)
293 1ls1_A Signal recognition part 95.7 0.0069 2.4E-07 56.2 4.1 26 31-56 97-122 (295)
294 2b8t_A Thymidine kinase; deoxy 95.7 0.0052 1.8E-07 55.1 3.1 27 30-56 10-36 (223)
295 3pxi_A Negative regulator of g 95.7 0.0055 1.9E-07 63.8 3.6 36 30-65 199-244 (758)
296 1yrb_A ATP(GTP)binding protein 95.7 0.0099 3.4E-07 52.8 4.8 35 31-65 13-51 (262)
297 1sxj_E Activator 1 40 kDa subu 95.6 0.0044 1.5E-07 57.6 2.5 22 35-56 39-60 (354)
298 2qen_A Walker-type ATPase; unk 95.6 0.0063 2.1E-07 55.8 3.5 34 32-65 31-64 (350)
299 1v5w_A DMC1, meiotic recombina 95.6 0.0095 3.3E-07 56.3 4.7 29 27-55 117-145 (343)
300 2qm8_A GTPase/ATPase; G protei 95.6 0.0096 3.3E-07 56.3 4.7 28 29-56 52-79 (337)
301 1sxj_C Activator 1 40 kDa subu 95.6 0.0049 1.7E-07 57.6 2.6 23 35-57 49-71 (340)
302 3sop_A Neuronal-specific septi 95.6 0.006 2E-07 56.0 3.1 23 34-56 4-26 (270)
303 3lda_A DNA repair protein RAD5 95.6 0.0055 1.9E-07 59.6 3.0 28 27-54 173-200 (400)
304 2z43_A DNA repair and recombin 95.6 0.008 2.7E-07 56.2 4.0 30 27-56 102-131 (324)
305 3b60_A Lipid A export ATP-bind 95.6 0.006 2.1E-07 61.7 3.3 29 29-57 366-394 (582)
306 2z4s_A Chromosomal replication 95.6 0.0054 1.9E-07 60.0 2.9 25 32-56 130-154 (440)
307 3b5x_A Lipid A export ATP-bind 95.6 0.0063 2.2E-07 61.6 3.4 28 29-56 366-393 (582)
308 2hf9_A Probable hydrogenase ni 95.5 0.0078 2.7E-07 52.2 3.5 34 31-64 37-74 (226)
309 1pui_A ENGB, probable GTP-bind 95.5 0.0037 1.3E-07 53.4 1.5 27 30-56 24-50 (210)
310 1r6b_X CLPA protein; AAA+, N-t 95.5 0.0074 2.5E-07 62.6 4.0 31 34-64 490-520 (758)
311 3ozx_A RNAse L inhibitor; ATP 95.5 0.0065 2.2E-07 61.3 3.4 27 30-56 23-49 (538)
312 1ojl_A Transcriptional regulat 95.5 0.01 3.5E-07 55.1 4.5 37 30-66 23-64 (304)
313 2www_A Methylmalonic aciduria 95.5 0.011 3.8E-07 56.1 4.8 34 31-64 73-111 (349)
314 1sxj_D Activator 1 41 kDa subu 95.5 0.0058 2E-07 56.5 2.6 25 33-57 59-83 (353)
315 2zr9_A Protein RECA, recombina 95.5 0.0078 2.7E-07 57.3 3.6 29 27-55 56-84 (349)
316 1yqt_A RNAse L inhibitor; ATP- 95.4 0.0077 2.6E-07 60.6 3.6 28 29-56 44-71 (538)
317 1iqp_A RFCS; clamp loader, ext 95.4 0.0076 2.6E-07 54.9 3.2 26 32-57 46-71 (327)
318 1knx_A Probable HPR(Ser) kinas 95.4 0.011 3.8E-07 55.7 4.4 39 31-70 146-184 (312)
319 1oix_A RAS-related protein RAB 95.4 0.0082 2.8E-07 51.1 3.1 24 33-56 30-53 (191)
320 3qf4_B Uncharacterized ABC tra 95.4 0.0064 2.2E-07 61.8 2.9 29 29-57 378-406 (598)
321 1j8m_F SRP54, signal recogniti 95.4 0.0082 2.8E-07 55.9 3.4 34 32-65 98-136 (297)
322 3bh0_A DNAB-like replicative h 95.4 0.0098 3.3E-07 55.5 3.9 29 27-55 63-91 (315)
323 3cf2_A TER ATPase, transitiona 95.4 0.0099 3.4E-07 62.8 4.3 38 29-66 508-545 (806)
324 2xxa_A Signal recognition part 95.4 0.012 4E-07 57.8 4.5 36 30-65 98-139 (433)
325 2a5j_A RAS-related protein RAB 95.3 0.013 4.3E-07 49.4 4.1 23 33-55 22-44 (191)
326 2f9l_A RAB11B, member RAS onco 95.3 0.0086 2.9E-07 51.0 3.0 23 33-55 6-28 (199)
327 2yl4_A ATP-binding cassette SU 95.3 0.0066 2.2E-07 61.6 2.6 29 29-57 367-395 (595)
328 2ffh_A Protein (FFH); SRP54, s 95.3 0.011 3.9E-07 57.9 4.1 35 31-65 97-136 (425)
329 4a82_A Cystic fibrosis transme 95.3 0.0053 1.8E-07 62.1 1.8 29 29-57 364-392 (578)
330 2chq_A Replication factor C sm 95.3 0.0079 2.7E-07 54.6 2.8 23 34-56 40-62 (319)
331 2wji_A Ferrous iron transport 95.2 0.0096 3.3E-07 49.1 3.0 24 32-55 3-26 (165)
332 2p67_A LAO/AO transport system 95.2 0.014 4.9E-07 55.0 4.5 38 29-66 53-95 (341)
333 2j37_W Signal recognition part 95.2 0.013 4.4E-07 58.7 4.4 36 30-65 99-139 (504)
334 3qf4_A ABC transporter, ATP-bi 95.2 0.0068 2.3E-07 61.5 2.3 29 29-57 366-394 (587)
335 2i1q_A DNA repair and recombin 95.2 0.0093 3.2E-07 55.4 3.0 29 27-55 93-121 (322)
336 2vhj_A Ntpase P4, P4; non- hyd 95.2 0.0085 2.9E-07 57.0 2.8 29 27-55 118-146 (331)
337 2dyk_A GTP-binding protein; GT 95.2 0.011 3.8E-07 47.6 3.2 24 33-56 2-25 (161)
338 2lkc_A Translation initiation 95.2 0.014 4.7E-07 48.0 3.8 26 30-55 6-31 (178)
339 2yv5_A YJEQ protein; hydrolase 95.2 0.011 3.8E-07 54.9 3.4 26 31-57 164-189 (302)
340 1u0j_A DNA replication protein 95.1 0.013 4.6E-07 54.0 3.9 28 30-57 102-129 (267)
341 1sxj_B Activator 1 37 kDa subu 95.1 0.0092 3.1E-07 54.2 2.8 24 33-56 43-66 (323)
342 3ozx_A RNAse L inhibitor; ATP 95.1 0.0084 2.9E-07 60.4 2.7 27 30-56 292-318 (538)
343 2wjg_A FEOB, ferrous iron tran 95.1 0.011 3.8E-07 49.2 3.0 25 31-55 6-30 (188)
344 2ged_A SR-beta, signal recogni 95.1 0.014 4.7E-07 49.0 3.6 27 30-56 46-72 (193)
345 2fna_A Conserved hypothetical 95.1 0.011 3.6E-07 54.3 3.1 33 33-65 31-65 (357)
346 3j16_B RLI1P; ribosome recycli 95.1 0.011 3.9E-07 60.4 3.6 28 29-56 100-127 (608)
347 3nbx_X ATPase RAVA; AAA+ ATPas 95.1 0.013 4.6E-07 58.5 4.0 27 32-58 41-67 (500)
348 1ypw_A Transitional endoplasmi 95.1 0.0045 1.6E-07 65.3 0.6 36 30-65 509-544 (806)
349 1yqt_A RNAse L inhibitor; ATP- 95.0 0.01 3.5E-07 59.8 3.0 27 30-56 310-336 (538)
350 3bk7_A ABC transporter ATP-bin 95.0 0.011 3.7E-07 60.5 3.3 28 29-56 114-141 (607)
351 2r6a_A DNAB helicase, replicat 95.0 0.014 4.7E-07 57.2 3.9 30 27-56 198-227 (454)
352 1r6b_X CLPA protein; AAA+, N-t 95.0 0.016 5.6E-07 60.1 4.5 27 30-56 205-231 (758)
353 3k1j_A LON protease, ATP-depen 95.0 0.012 4.1E-07 59.8 3.4 29 29-57 57-85 (604)
354 2qag_B Septin-6, protein NEDD5 95.0 0.011 3.8E-07 58.1 3.0 27 29-55 37-65 (427)
355 1u94_A RECA protein, recombina 95.0 0.012 4.3E-07 56.2 3.3 37 27-63 58-99 (356)
356 1u0l_A Probable GTPase ENGC; p 95.0 0.013 4.3E-07 54.4 3.2 27 31-57 168-194 (301)
357 3qks_A DNA double-strand break 95.0 0.01 3.5E-07 51.8 2.5 27 32-58 23-49 (203)
358 3bk7_A ABC transporter ATP-bin 95.0 0.011 3.8E-07 60.5 3.0 27 30-56 380-406 (607)
359 2ce2_X GTPase HRAS; signaling 95.0 0.013 4.4E-07 47.1 2.9 23 33-55 4-26 (166)
360 1tf7_A KAIC; homohexamer, hexa 94.9 0.012 3.9E-07 58.8 3.1 25 28-52 35-59 (525)
361 1nrj_B SR-beta, signal recogni 94.9 0.016 5.6E-07 49.7 3.6 26 31-56 11-36 (218)
362 3qf7_A RAD50; ABC-ATPase, ATPa 94.9 0.014 4.7E-07 55.8 3.4 24 32-55 23-46 (365)
363 1upt_A ARL1, ADP-ribosylation 94.9 0.018 6.3E-07 46.8 3.7 26 30-55 5-30 (171)
364 1xp8_A RECA protein, recombina 94.9 0.02 6.7E-07 55.0 4.4 39 27-65 69-112 (366)
365 3llu_A RAS-related GTP-binding 94.9 0.014 4.9E-07 49.5 3.1 27 31-57 19-45 (196)
366 1z2a_A RAS-related protein RAB 94.9 0.014 4.8E-07 47.2 2.9 24 32-55 5-28 (168)
367 4f4c_A Multidrug resistance pr 94.9 0.012 4.1E-07 65.3 3.2 29 29-57 1102-1130(1321)
368 1a5t_A Delta prime, HOLB; zinc 94.9 0.014 4.7E-07 54.7 3.2 29 31-59 23-51 (334)
369 2gj8_A MNME, tRNA modification 94.9 0.015 5.1E-07 48.5 3.1 25 31-55 3-27 (172)
370 2zej_A Dardarin, leucine-rich 94.9 0.011 3.9E-07 49.6 2.4 22 34-55 4-25 (184)
371 3llm_A ATP-dependent RNA helic 94.8 0.015 5.1E-07 51.4 3.2 22 31-52 75-96 (235)
372 2rcn_A Probable GTPase ENGC; Y 94.8 0.015 5E-07 55.9 3.4 27 31-57 214-240 (358)
373 3euj_A Chromosome partition pr 94.8 0.015 5E-07 58.1 3.4 27 29-56 27-53 (483)
374 2obl_A ESCN; ATPase, hydrolase 94.8 0.015 5.3E-07 55.3 3.4 29 29-57 68-96 (347)
375 2dpy_A FLII, flagellum-specifi 94.8 0.018 6.1E-07 56.6 3.9 29 29-57 154-182 (438)
376 4b3f_X DNA-binding protein smu 94.7 0.019 6.7E-07 58.6 4.2 26 31-56 204-229 (646)
377 3kkq_A RAS-related protein M-R 94.7 0.02 6.7E-07 47.5 3.5 24 32-55 18-41 (183)
378 4ag6_A VIRB4 ATPase, type IV s 94.7 0.015 5E-07 55.6 3.0 35 31-65 34-71 (392)
379 1t9h_A YLOQ, probable GTPase E 94.7 0.0092 3.1E-07 56.1 1.6 26 31-56 172-197 (307)
380 2q6t_A DNAB replication FORK h 94.7 0.018 6.2E-07 56.2 3.8 29 27-55 195-223 (444)
381 3j16_B RLI1P; ribosome recycli 94.7 0.016 5.6E-07 59.3 3.5 27 30-56 376-402 (608)
382 1kao_A RAP2A; GTP-binding prot 94.7 0.017 5.9E-07 46.5 3.0 23 33-55 4-26 (167)
383 1w5s_A Origin recognition comp 94.7 0.014 4.9E-07 54.9 2.9 26 31-56 49-76 (412)
384 1tq4_A IIGP1, interferon-induc 94.7 0.016 5.6E-07 56.6 3.3 24 33-56 70-93 (413)
385 1svi_A GTP-binding protein YSX 94.7 0.019 6.6E-07 48.1 3.3 25 31-55 22-46 (195)
386 1u8z_A RAS-related protein RAL 94.7 0.02 6.8E-07 46.1 3.3 24 32-55 4-27 (168)
387 1ek0_A Protein (GTP-binding pr 94.6 0.018 6.1E-07 46.6 3.0 23 33-55 4-26 (170)
388 4aby_A DNA repair protein RECN 94.6 0.012 4.2E-07 56.1 2.3 29 29-58 58-86 (415)
389 1z0j_A RAB-22, RAS-related pro 94.6 0.018 6.1E-07 46.7 2.9 23 33-55 7-29 (170)
390 1g16_A RAS-related protein SEC 94.6 0.017 6E-07 46.8 2.8 23 33-55 4-26 (170)
391 3qkt_A DNA double-strand break 94.6 0.019 6.5E-07 54.0 3.4 24 31-54 22-45 (339)
392 1ky3_A GTP-binding protein YPT 94.6 0.018 6.2E-07 47.2 2.9 24 32-55 8-31 (182)
393 1zd9_A ADP-ribosylation factor 94.6 0.021 7.1E-07 48.0 3.4 24 32-55 22-45 (188)
394 3pqc_A Probable GTP-binding pr 94.5 0.021 7.2E-07 47.5 3.3 26 31-56 22-47 (195)
395 2orv_A Thymidine kinase; TP4A 94.5 0.017 5.7E-07 52.4 2.8 26 31-56 18-43 (234)
396 2erx_A GTP-binding protein DI- 94.5 0.019 6.5E-07 46.5 2.9 23 33-55 4-26 (172)
397 1qvr_A CLPB protein; coiled co 94.5 0.017 5.7E-07 61.1 3.0 24 33-56 589-612 (854)
398 1qhl_A Protein (cell division 94.4 0.0038 1.3E-07 56.1 -1.7 25 33-57 28-52 (227)
399 3ch4_B Pmkase, phosphomevalona 94.4 0.029 9.9E-07 49.7 4.0 27 31-57 10-36 (202)
400 1wms_A RAB-9, RAB9, RAS-relate 94.4 0.022 7.4E-07 46.7 2.9 23 33-55 8-30 (177)
401 1z08_A RAS-related protein RAB 94.4 0.022 7.4E-07 46.3 2.9 24 32-55 6-29 (170)
402 2o52_A RAS-related protein RAB 94.4 0.022 7.5E-07 48.6 3.0 24 32-55 25-48 (200)
403 1c1y_A RAS-related protein RAP 94.4 0.023 7.8E-07 45.9 3.0 23 33-55 4-26 (167)
404 3q85_A GTP-binding protein REM 94.3 0.022 7.5E-07 46.3 2.9 22 34-55 4-25 (169)
405 1tf7_A KAIC; homohexamer, hexa 94.3 0.019 6.5E-07 57.3 3.0 30 27-56 276-305 (525)
406 2j9r_A Thymidine kinase; TK1, 94.3 0.023 7.8E-07 50.8 3.2 27 30-56 26-52 (214)
407 1r2q_A RAS-related protein RAB 94.3 0.023 8E-07 45.9 3.0 24 32-55 6-29 (170)
408 2fn4_A P23, RAS-related protei 94.3 0.024 8.2E-07 46.4 3.1 25 31-55 8-32 (181)
409 2hxs_A RAB-26, RAS-related pro 94.3 0.029 9.8E-07 46.0 3.6 24 32-55 6-29 (178)
410 3con_A GTPase NRAS; structural 94.3 0.02 6.9E-07 47.8 2.7 24 32-55 21-44 (190)
411 3lxx_A GTPase IMAP family memb 94.3 0.022 7.4E-07 50.2 3.0 25 31-55 28-52 (239)
412 2nzj_A GTP-binding protein REM 94.3 0.025 8.5E-07 46.2 3.1 24 32-55 4-27 (175)
413 1e69_A Chromosome segregation 94.3 0.019 6.6E-07 53.5 2.6 25 32-56 24-48 (322)
414 4f4c_A Multidrug resistance pr 94.2 0.021 7.1E-07 63.4 3.2 29 29-57 441-469 (1321)
415 2r2a_A Uncharacterized protein 94.2 0.03 1E-06 49.1 3.7 24 32-55 5-28 (199)
416 1w1w_A Structural maintenance 94.2 0.03 1E-06 54.2 4.0 28 31-58 25-52 (430)
417 4dsu_A GTPase KRAS, isoform 2B 94.2 0.025 8.4E-07 46.8 2.9 24 32-55 4-27 (189)
418 4a1f_A DNAB helicase, replicat 94.2 0.029 1E-06 53.3 3.8 30 27-56 41-70 (338)
419 2y8e_A RAB-protein 6, GH09086P 94.2 0.024 8.4E-07 46.3 2.9 23 33-55 15-37 (179)
420 3bgw_A DNAB-like replicative h 94.2 0.028 9.5E-07 55.2 3.7 30 27-56 192-221 (444)
421 2ew1_A RAS-related protein RAB 94.1 0.029 1E-06 48.3 3.4 24 32-55 26-49 (201)
422 1r8s_A ADP-ribosylation factor 94.1 0.028 9.4E-07 45.5 3.1 22 34-55 2-23 (164)
423 3q72_A GTP-binding protein RAD 94.1 0.024 8.2E-07 46.0 2.7 22 34-55 4-25 (166)
424 3bc1_A RAS-related protein RAB 94.1 0.027 9.2E-07 46.6 3.0 23 33-55 12-34 (195)
425 1z0f_A RAB14, member RAS oncog 94.1 0.028 9.5E-07 46.0 3.0 24 32-55 15-38 (179)
426 2oil_A CATX-8, RAS-related pro 94.1 0.027 9.2E-07 47.2 2.9 24 32-55 25-48 (193)
427 3tw8_B RAS-related protein RAB 94.0 0.026 8.9E-07 46.2 2.7 23 33-55 10-32 (181)
428 3clv_A RAB5 protein, putative; 94.0 0.035 1.2E-06 46.1 3.5 24 32-55 7-30 (208)
429 2cxx_A Probable GTP-binding pr 94.0 0.024 8.3E-07 47.0 2.5 22 34-55 3-24 (190)
430 2a9k_A RAS-related protein RAL 94.0 0.029 9.8E-07 46.2 3.0 24 32-55 18-41 (187)
431 2iw3_A Elongation factor 3A; a 94.0 0.024 8.2E-07 61.1 3.1 26 29-54 458-483 (986)
432 3dz8_A RAS-related protein RAB 94.0 0.031 1E-06 47.0 3.1 26 31-56 22-47 (191)
433 2bme_A RAB4A, RAS-related prot 94.0 0.028 9.6E-07 46.5 2.9 24 32-55 10-33 (186)
434 3pih_A Uvrabc system protein A 94.0 0.017 5.8E-07 61.9 1.8 23 29-51 21-43 (916)
435 3t1o_A Gliding protein MGLA; G 94.0 0.034 1.1E-06 46.2 3.3 26 32-57 14-39 (198)
436 2ygr_A Uvrabc system protein A 93.9 0.02 6.9E-07 61.6 2.3 23 29-51 43-65 (993)
437 3ihw_A Centg3; RAS, centaurin, 93.9 0.033 1.1E-06 46.9 3.2 25 31-55 19-43 (184)
438 2fz4_A DNA repair protein RAD2 93.9 0.038 1.3E-06 49.2 3.7 25 33-57 109-133 (237)
439 2r6f_A Excinuclease ABC subuni 93.9 0.021 7.1E-07 61.4 2.3 23 29-51 41-63 (972)
440 2efe_B Small GTP-binding prote 93.9 0.031 1.1E-06 45.9 2.9 23 33-55 13-35 (181)
441 2vf7_A UVRA2, excinuclease ABC 93.8 0.022 7.5E-07 60.5 2.4 23 29-51 33-55 (842)
442 3auy_A DNA double-strand break 93.8 0.032 1.1E-06 53.0 3.3 24 31-54 24-47 (371)
443 2qnr_A Septin-2, protein NEDD5 93.8 0.025 8.7E-07 52.4 2.5 22 34-55 20-41 (301)
444 1moz_A ARL1, ADP-ribosylation 93.8 0.027 9.1E-07 46.5 2.4 24 31-54 17-40 (183)
445 1mh1_A RAC1; GTP-binding, GTPa 93.8 0.033 1.1E-06 45.9 3.0 24 32-55 5-28 (186)
446 1m7b_A RND3/RHOE small GTP-bin 93.8 0.032 1.1E-06 46.6 2.9 24 32-55 7-30 (184)
447 2bov_A RAla, RAS-related prote 93.8 0.033 1.1E-06 46.9 3.0 24 32-55 14-37 (206)
448 2p5s_A RAS and EF-hand domain 93.8 0.037 1.3E-06 46.9 3.3 26 30-55 26-51 (199)
449 3ux8_A Excinuclease ABC, A sub 93.8 0.023 7.9E-07 58.4 2.4 24 29-52 345-368 (670)
450 3io5_A Recombination and repai 93.8 0.035 1.2E-06 52.7 3.4 28 27-55 24-51 (333)
451 4dhe_A Probable GTP-binding pr 93.7 0.029 9.9E-07 48.2 2.6 25 31-55 28-52 (223)
452 2g6b_A RAS-related protein RAB 93.7 0.035 1.2E-06 45.6 3.0 24 32-55 10-33 (180)
453 1ksh_A ARF-like protein 2; sma 93.7 0.035 1.2E-06 46.1 3.0 26 30-55 16-41 (186)
454 2fh5_B SR-beta, signal recogni 93.7 0.037 1.3E-06 47.3 3.2 25 31-55 6-30 (214)
455 1m2o_B GTP-binding protein SAR 93.7 0.037 1.3E-06 46.8 3.2 25 31-55 22-46 (190)
456 3g5u_A MCG1178, multidrug resi 93.7 0.026 9E-07 62.4 2.8 29 29-57 413-441 (1284)
457 1wb9_A DNA mismatch repair pro 93.7 0.034 1.2E-06 58.7 3.5 26 30-55 605-630 (800)
458 3czp_A Putative polyphosphate 93.7 0.16 5.5E-06 50.8 8.2 114 29-175 40-173 (500)
459 1q57_A DNA primase/helicase; d 93.7 0.035 1.2E-06 54.8 3.4 30 27-56 237-266 (503)
460 3f9v_A Minichromosome maintena 93.7 0.021 7.2E-07 58.1 1.8 29 34-62 329-357 (595)
461 2fv8_A H6, RHO-related GTP-bin 93.7 0.034 1.2E-06 47.5 2.9 25 31-55 24-48 (207)
462 1vg8_A RAS-related protein RAB 93.7 0.035 1.2E-06 46.9 2.9 24 32-55 8-31 (207)
463 1gwn_A RHO-related GTP-binding 93.6 0.036 1.2E-06 47.8 3.0 25 31-55 27-51 (205)
464 3tkl_A RAS-related protein RAB 93.6 0.037 1.3E-06 46.2 3.0 23 33-55 17-39 (196)
465 3t5g_A GTP-binding protein RHE 93.6 0.037 1.3E-06 45.7 2.9 24 32-55 6-29 (181)
466 3oes_A GTPase rhebl1; small GT 93.6 0.039 1.3E-06 46.8 3.0 25 31-55 23-47 (201)
467 3ux8_A Excinuclease ABC, A sub 93.5 0.026 8.7E-07 58.0 2.2 21 29-49 41-61 (670)
468 3lxw_A GTPase IMAP family memb 93.5 0.037 1.3E-06 49.5 3.0 26 31-56 20-45 (247)
469 2iw3_A Elongation factor 3A; a 93.5 0.026 8.8E-07 60.9 2.3 28 29-56 696-723 (986)
470 1p6x_A Thymidine kinase; P-loo 93.5 0.025 8.6E-07 53.7 1.9 28 31-58 6-33 (334)
471 2gf9_A RAS-related protein RAB 93.5 0.04 1.4E-06 46.1 3.0 24 32-55 22-45 (189)
472 2h17_A ADP-ribosylation factor 93.5 0.039 1.3E-06 45.9 2.9 25 31-55 20-44 (181)
473 1fzq_A ADP-ribosylation factor 93.5 0.044 1.5E-06 45.8 3.2 26 31-56 15-40 (181)
474 1zj6_A ADP-ribosylation factor 93.5 0.047 1.6E-06 45.5 3.4 25 31-55 15-39 (187)
475 1z6t_A APAF-1, apoptotic prote 93.5 0.037 1.3E-06 55.1 3.2 24 31-54 146-169 (591)
476 2qu8_A Putative nucleolar GTP- 93.5 0.043 1.5E-06 47.8 3.2 25 31-55 28-52 (228)
477 2r8r_A Sensor protein; KDPD, P 93.5 0.061 2.1E-06 48.5 4.3 33 33-65 7-44 (228)
478 3bwd_D RAC-like GTP-binding pr 93.5 0.05 1.7E-06 44.7 3.5 25 31-55 7-31 (182)
479 3szr_A Interferon-induced GTP- 93.4 0.023 8E-07 57.9 1.7 24 33-56 46-69 (608)
480 2iwr_A Centaurin gamma 1; ANK 93.4 0.038 1.3E-06 45.5 2.7 23 33-55 8-30 (178)
481 2fg5_A RAB-22B, RAS-related pr 93.4 0.039 1.3E-06 46.5 2.8 24 32-55 23-46 (192)
482 3fwy_A Light-independent proto 93.4 0.054 1.8E-06 50.7 3.9 37 29-65 45-86 (314)
483 1x3s_A RAS-related protein RAB 93.4 0.043 1.5E-06 45.6 3.0 23 33-55 16-38 (195)
484 1ewq_A DNA mismatch repair pro 93.3 0.039 1.3E-06 57.9 3.3 24 32-55 576-599 (765)
485 4gzl_A RAS-related C3 botulinu 93.3 0.047 1.6E-06 46.7 3.2 26 30-55 28-53 (204)
486 3g5u_A MCG1178, multidrug resi 93.3 0.039 1.3E-06 61.1 3.3 29 29-57 1056-1084(1284)
487 2xtp_A GTPase IMAP family memb 93.3 0.046 1.6E-06 48.7 3.3 25 31-55 21-45 (260)
488 2bcg_Y Protein YP2, GTP-bindin 93.3 0.041 1.4E-06 46.7 2.8 23 33-55 9-31 (206)
489 2gf0_A GTP-binding protein DI- 93.3 0.054 1.8E-06 45.3 3.5 25 31-55 7-31 (199)
490 1zbd_A Rabphilin-3A; G protein 93.3 0.042 1.5E-06 46.4 2.8 23 33-55 9-31 (203)
491 3k53_A Ferrous iron transport 93.3 0.049 1.7E-06 49.1 3.4 24 32-55 3-26 (271)
492 2atv_A RERG, RAS-like estrogen 93.2 0.054 1.9E-06 45.6 3.5 25 31-55 27-51 (196)
493 2o5v_A DNA replication and rep 93.2 0.048 1.6E-06 52.2 3.4 23 32-54 26-48 (359)
494 2qag_C Septin-7; cell cycle, c 93.2 0.036 1.2E-06 54.1 2.6 22 35-56 34-55 (418)
495 3c5c_A RAS-like protein 12; GD 93.2 0.046 1.6E-06 45.9 2.9 24 32-55 21-44 (187)
496 3thx_B DNA mismatch repair pro 93.1 0.044 1.5E-06 58.7 3.3 25 30-54 671-695 (918)
497 3cph_A RAS-related protein SEC 93.1 0.049 1.7E-06 46.2 2.9 25 31-55 19-43 (213)
498 4dey_A Voltage-dependent L-typ 93.1 0.84 2.9E-05 43.3 11.7 119 33-172 143-274 (337)
499 1z06_A RAS-related protein RAB 93.1 0.054 1.8E-06 45.3 3.1 25 31-55 19-43 (189)
500 3end_A Light-independent proto 93.1 0.065 2.2E-06 49.0 3.9 37 29-65 38-79 (307)
No 1
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=100.00 E-value=3.9e-72 Score=538.41 Aligned_cols=285 Identities=46% Similarity=0.799 Sum_probs=238.9
Q ss_pred cccccccccccccc-ccc----CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCC
Q 020775 13 MDLSSCRPRMDLLV-SRR----QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGI 87 (321)
Q Consensus 13 ~~~~~~~~~~~~~~-~~~----~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gv 87 (321)
++.+.|+++.|.++ ++. .++++|+|+||||||||+||+.||++++++|||+||||+|+||||+|+||+++|++|+
T Consensus 16 ~~~~~~~~~~~~~~~~m~~~~~~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gv 95 (339)
T 3a8t_A 16 VAMAAAPTTTTTTNVSLRRQRHRKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGV 95 (339)
T ss_dssp ----------------------CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTC
T ss_pred hhhhhccCCCCccccccccccccCCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCC
Confidence 44577998877776 542 3567999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCC-CccccHhhHHHHHHHHHHHHhhcCCcEEEEcCchHHHHHHhcccc------cc-------c--cccCCe
Q 020775 88 PHHLLGIQHP-NADFTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDED------YG-------F--RWKYDC 151 (321)
Q Consensus 88 phhll~~~~~-~~~~~~~~f~~~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~------~~-------~--r~~~~~ 151 (321)
||||+|+.+| .+.|++++|+++|.++|+++.++|++||+||||++|+++++.|.- +. + ..++++
T Consensus 96 phhlidi~~~~~e~~s~~~F~~~a~~~i~~i~~~g~~pIlvGGtglYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~ 175 (339)
T 3a8t_A 96 PHHLLGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDC 175 (339)
T ss_dssp CEESSSCBCGGGCCCCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHBSSCCTTCC-------------CBSSEE
T ss_pred CEeeccccCcccCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCCCCCcccChhhhcccCccccccccCe
Confidence 9999999999 889999999999999999999999999999999999999998741 00 0 135678
Q ss_pred EEEEEeCCHHHHHHHHHHhHHHHHhccHHHHHHHhhcCCCC-------CCCCccccccHHHHHHhHhcC--------CCC
Q 020775 152 CFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNAD-------YSKGVRKAIGVPEFDLYFKME--------PFL 216 (321)
Q Consensus 152 ~~i~L~~~~~~L~~RL~~R~~~Ml~~Gll~Ev~~l~~~~~~-------~~~gi~qaIGykE~~~yl~~~--------~~~ 216 (321)
++|||++++++|++||++|++.|+++|+++|++.|++.+.. ++.|++|+||||||.+||+++ ...
T Consensus 176 ~~i~L~~~re~L~~RI~~R~~~Ml~~Gl~eEv~~L~~~~~~~~~~~~~~~~~~~~aIGykE~~~yl~g~~~~~~~~~~~~ 255 (339)
T 3a8t_A 176 CFLWVDVSVKVLTDYLAKRVDDMLELGMFDELAEFYSPEDEDHDEDSATRTGLRKAIGVPEFDRYFEKFRPGDVEGEDPG 255 (339)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHHHHHTHHHHHHHHCCTTCSCTTSCGGGSCGGGGSTTHHHHHHHHHHSCTTCCCCSCCT
T ss_pred EEEEEeCCHHHHHHHHHhhccHhhhccHHHHHHHHHHhcCccccccchhccHHHHHhhHHHHHHHHcCcccccccccccc
Confidence 99999999999999999999999999999999999986532 237999999999999999983 233
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcceEEecCchhhHh---hhcCcchHHHHHhhhhchHHHHHH
Q 020775 217 DEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNIHRFDATQVFRI---RQHGKAADEAWEKFVAGPSTRLVE 293 (321)
Q Consensus 217 ~~~~~~~~l~~~ie~ik~~TrqyAkRQ~tW~rr~~~~~~~~i~~lD~t~~~~~---~~~~~~~~~~W~~~V~~pa~~iv~ 293 (321)
++..++..+++|++.+|.+||||||||+||||++.+ .+|++|++|+|+++.. ...+.+..+.|++.|.+||++||+
T Consensus 256 ~~~~~~~~l~eaie~ik~~TR~yAKRQ~tWfr~~~~-~~w~i~~lDat~~~~~~~~~~~~~~~~~~W~~~V~~pa~~iv~ 334 (339)
T 3a8t_A 256 RDRVRRGAFEEAVRAIKENTCHLAKRQIGKILRLKG-AGWDLRRLDATESFRAAMTSDSGEKCTEIWEKQVLEPSVKIVS 334 (339)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SCCCEEEEECHHHHHHHHSTTTTHHHHHHHHHHTHHHHHHHHH
T ss_pred cchhhhcCHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCceeeeccccchhhhhhccccchhhHHHHHHHHHHHHHHHH
Confidence 456677889999999999999999999999999865 4799999999999732 123556678999999999999999
Q ss_pred HHhcC
Q 020775 294 EFLYN 298 (321)
Q Consensus 294 ~fl~~ 298 (321)
+||++
T Consensus 335 ~fl~~ 339 (339)
T 3a8t_A 335 RFLDE 339 (339)
T ss_dssp HHHHC
T ss_pred HHhhC
Confidence 99964
No 2
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=100.00 E-value=8.5e-69 Score=525.51 Aligned_cols=256 Identities=30% Similarity=0.537 Sum_probs=225.1
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHH
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMAS 111 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~ 111 (321)
+++|+|+||||||||+||..||++++++|||+||||+|++|+|+|+||+.+|+.|+||||+|..+|.+.|++++|.++|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~ 81 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECM 81 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCcEEEEcCchHHHHHHhcccc-------cc----------------------------------------
Q 020775 112 FSIESTLNKGKVPIIVGGSNSYIEALVDDED-------YG---------------------------------------- 144 (321)
Q Consensus 112 ~~i~~i~~~g~~pIivGGt~~Y~~all~g~~-------~~---------------------------------------- 144 (321)
+.|+++.++|++||+||||++|++||++|.. ..
T Consensus 82 ~~i~~i~~~g~~pilVGGTglYi~aLl~gl~~~~~~~~~~~r~~~~~~~~~g~~~L~~~L~~~DP~~A~rihpnd~~Ri~ 161 (409)
T 3eph_A 82 NAIEDIHRRGKIPIVVGGTHYYLQTLFNKRVDTKSSERKLTRKQLDILESTDPDVIYNTLVKCDPDIATKYHPNDYRRVQ 161 (409)
T ss_dssp HHHHHHHTTTCEEEEECSCGGGGGGGGTCSCCCSSSCCCCCHHHHHHHTCSSSSSHHHHHHHSCHHHHTTSCTTCHHHHH
T ss_pred HHHHHHHhcCCCEEEECChHHHHHHHHccccCCCCccCHHHHHHHHHHhccCHHHHHHHHHHhCHHHHHhcCcccHHHHH
Confidence 9999999999999999999999999997631 00
Q ss_pred ---------------c------cccCCeEEEEEeCCHHHHHHHHHHhHHHHHhccHHHHHHHhhcCCC-------CCCCC
Q 020775 145 ---------------F------RWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNA-------DYSKG 196 (321)
Q Consensus 145 ---------------~------r~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml~~Gll~Ev~~l~~~~~-------~~~~g 196 (321)
+ ..+|++++|||++++++|++||++|++.|+++||+|||+.|++.+. +++.+
T Consensus 162 RALEV~~~TG~~~S~~~~~~~~~~~~~~~~i~L~~~R~~L~~RI~~Rvd~Ml~~GlleEv~~L~~~~~~~~~~~~~~~~~ 241 (409)
T 3eph_A 162 RMLEIYYKTGKKPSETFNEQKITLKFDTLFLWLYSKPEPLFQRLDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCENG 241 (409)
T ss_dssp HHHHHHHHHCSCHHHHHHTCCCCCSSEEEEEEEECCHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTTCCGGGTTSG
T ss_pred HHHHHHHHHCCCHHHHHhhccCCCCcceEEEEEeCCHHHHHHHHHHHHHHHHHCcHHHHHHHHHHhcccccccccccccc
Confidence 0 0246789999999999999999999999999999999999997421 13568
Q ss_pred ccccccHHHHHHhHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccCCcceEEecCchhhHhhhcCcc
Q 020775 197 VRKAIGVPEFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLM-NVKRWNIHRFDATQVFRIRQHGKA 275 (321)
Q Consensus 197 i~qaIGykE~~~yl~~~~~~~~~~~~~~l~~~ie~ik~~TrqyAkRQ~tW~rr~~-~~~~~~i~~lD~t~~~~~~~~~~~ 275 (321)
++|+||||||.+||+|..+.. +..+++|++.++.+||||||||+||||++. ...++++|++|+|++
T Consensus 242 ~~~aIGYkE~~~yL~g~~~~~----e~~l~eaie~ik~~TRqyAKRQ~TWfR~~~~~~~~~~i~~lD~t~~--------- 308 (409)
T 3eph_A 242 VWQVIGFKEFLPWLTGKTDDN----TVKLEDCIERMKTRTRQYAKRQVKWIKKMLIPDIKGDIYLLDATDL--------- 308 (409)
T ss_dssp GGGSTTTGGGGGGGC-----------CCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTCEEEEECSCT---------
T ss_pred chhcccHHHHHHHHcCCCccc----ccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCceEEEcCCCh---------
Confidence 999999999999999842100 012899999999999999999999999873 222357999999988
Q ss_pred hHHHHHhhhhchHHHHHHHHhcCCCCC
Q 020775 276 ADEAWEKFVAGPSTRLVEEFLYNVPVE 302 (321)
Q Consensus 276 ~~~~W~~~V~~pa~~iv~~fl~~~~~~ 302 (321)
+.|++.|.+||++|+++||+|++.+
T Consensus 309 --~~W~~~V~~pa~~iv~~fl~~~~~~ 333 (409)
T 3eph_A 309 --SQWDTNASQRAIAISNDFISNRPIK 333 (409)
T ss_dssp --TTCTTTTHHHHHHHHHHHHTTCCCC
T ss_pred --hHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 6899999999999999999997654
No 3
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=100.00 E-value=1.7e-64 Score=480.84 Aligned_cols=220 Identities=35% Similarity=0.575 Sum_probs=204.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMA 110 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a 110 (321)
++++|+|+||||||||+||..||++++++|||+||||||++|+|+|+||+++|++|+||||+|..+|.+.|++++|.++|
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a 81 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLA 81 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHH
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCcEEEEcCchHHHHHHhcccc-------cc---------------------------------------
Q 020775 111 SFSIESTLNKGKVPIIVGGSNSYIEALVDDED-------YG--------------------------------------- 144 (321)
Q Consensus 111 ~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~-------~~--------------------------------------- 144 (321)
.+.|+++.++|++||+||||++|++||++|.. +.
T Consensus 82 ~~~i~~i~~~gk~pIlVGGTglYi~aLl~g~~~~~~~~~~~~R~~l~~~~~~~g~~~L~~~L~~~DP~~A~~i~pnd~~R 161 (322)
T 3exa_A 82 TPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADEDYRHELEAFVNSYGVQALHDKLSKIDPKAAAAIHPNNYRR 161 (322)
T ss_dssp HHHHHHHHHTTCEEEEESCCHHHHHHHHHTCCCCCCBCCHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHTTSCTTCHHH
T ss_pred HHHHHHHHhCCCcEEEEcCcHHHHHHHHcCCcCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhhCHHHHhhcCcccHHH
Confidence 99999999999999999999999999998841 00
Q ss_pred -----------------c-------cccCCeEEEEEeCCHHHHHHHHHHhHHHHHhccHHHHHHHhhcCCCCCCCCcccc
Q 020775 145 -----------------F-------RWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRKA 200 (321)
Q Consensus 145 -----------------~-------r~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml~~Gll~Ev~~l~~~~~~~~~gi~qa 200 (321)
+ ...|++++|+|++++++|++||++|++.|+++||+|||+.|++.+ +.+.+++|+
T Consensus 162 i~RALEV~~~TG~~~S~~~~~~~~~~~~~~~~~i~L~~~R~~L~~RI~~Rvd~Ml~~Gl~eEv~~L~~~~-~~~~~a~~a 240 (322)
T 3exa_A 162 VIRALEIIKLTGKTVTEQARHEEETPSPYNLVMIGLTMERDVLYDRINRRVDQMVEEGLIDEAKKLYDRG-IRDCQSVQA 240 (322)
T ss_dssp HHHHHHHHHHTC--------------CCSEEEEEEEECCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTT-CCSSTGGGS
T ss_pred HHHHHHHHHHHCCCHHHHhhhccCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcC-CCcCcccee
Confidence 0 013678899999999999999999999999999999999999987 677899999
Q ss_pred ccHHHHHHhHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcceEEecCch
Q 020775 201 IGVPEFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNIHRFDATQ 265 (321)
Q Consensus 201 IGykE~~~yl~~~~~~~~~~~~~~l~~~ie~ik~~TrqyAkRQ~tW~rr~~~~~~~~i~~lD~t~ 265 (321)
|||||+.+||+|+.+ +++|++.++.+||||||||+||||+.. +++|+|.++
T Consensus 241 IGYkE~~~yL~G~~s---------l~eaie~i~~~TR~yAKRQ~TWfR~~~-----~~~w~~~~~ 291 (322)
T 3exa_A 241 IGYKEMYDYLDGNVT---------LEEAIDTLKRNSRRYAKRQLTWFRNKA-----NVTWFDMTD 291 (322)
T ss_dssp TTTHHHHHHHHTSSC---------HHHHHHHHHHHHHHHHHHHHHHHHTST-----TEEEEECTT
T ss_pred eeHHHHHHHHCCCCC---------HHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCeEeCCCC
Confidence 999999999999987 899999999999999999999999875 489998754
No 4
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=100.00 E-value=3.2e-64 Score=478.31 Aligned_cols=223 Identities=26% Similarity=0.429 Sum_probs=205.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHH
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDM 109 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~ 109 (321)
+++++|+|+||||||||+||..||++++++|||+||||+|+||||+|+||+++|++|+||||+|..+|.+.|++++|.++
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~ 87 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRD 87 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHH
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCcEEEEcCchHHHHHHhccccc------c---------------------------------------
Q 020775 110 ASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDY------G--------------------------------------- 144 (321)
Q Consensus 110 a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~------~--------------------------------------- 144 (321)
|.+.|+++.++|++||+||||++|++||++|... .
T Consensus 88 a~~~i~~i~~~g~~pilVGGTglYi~all~gl~~~p~~~~~~R~~l~~~~~~~g~~~l~~~L~~~DP~~A~ri~pnd~~R 167 (316)
T 3foz_A 88 ALAEMADITAAGRIPLLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAAEQGWESLHRQLQEVDPVAAARIHPNDPQR 167 (316)
T ss_dssp HHHHHHHHHHTTCEEEEEESCHHHHHHHHSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHHhCHHHHhhCCCccHHH
Confidence 9999999999999999999999999999988520 0
Q ss_pred -----------------c------cccCCeEEEEEeC-CHHHHHHHHHHhHHHHHhccHHHHHHHhhcCC-CCCCCCccc
Q 020775 145 -----------------F------RWKYDCCFLWVDV-SMPVLRSFVSERVDRMVQNGMIDEVRKFFDPN-ADYSKGVRK 199 (321)
Q Consensus 145 -----------------~------r~~~~~~~i~L~~-~~~~L~~RL~~R~~~Ml~~Gll~Ev~~l~~~~-~~~~~gi~q 199 (321)
+ ...|++++|+|++ ++++|++||++|++.|+++||+|||+.|++.+ .+.+.+++|
T Consensus 168 i~RALEV~~~TG~~~S~~~~~~~~~~~~~~~~i~L~~~~R~~L~~RI~~Rvd~Ml~~Gl~eEv~~L~~~~~~~~~~~~~~ 247 (316)
T 3foz_A 168 LSRALEVFFISGKTLTELTQTSGDALPYQVHQFAIAPASRELLHQRIEQRFHQMLASGFEAEVRALFARGDLHTDLPSIR 247 (316)
T ss_dssp HHHHHHHHHHHSSCHHHHHTSCCCCCSSEEEEEEEECSSHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHSCCCTTSTTTT
T ss_pred HHHHHHHHHHHCCCHHHHhhccCCCCCCceEEEEecCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccCCCccCccce
Confidence 0 0136788999999 99999999999999999999999999999875 456778999
Q ss_pred cccHHHHHHhHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcceEEecCchh
Q 020775 200 AIGVPEFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNIHRFDATQV 266 (321)
Q Consensus 200 aIGykE~~~yl~~~~~~~~~~~~~~l~~~ie~ik~~TrqyAkRQ~tW~rr~~~~~~~~i~~lD~t~~ 266 (321)
+|||||+.+||+|+.+ +++|++.++.+||||||||+||||+.. +++|+|.++.
T Consensus 248 aIGYkE~~~yL~G~~s---------~~eai~~~~~~TR~yAKRQ~TWfR~~~-----~~~w~~~~~~ 300 (316)
T 3foz_A 248 CVGYRQMWSYLEGEIS---------YDEMVYRGVCATRQLAKRQITWLRGWE-----GVHWLDSEKP 300 (316)
T ss_dssp STTHHHHHHHHHTSSC---------HHHHHHHHHHHHHHHHHHHHHHHHSCS-----SCEEEETTCH
T ss_pred eeehhhHHHHhcCCCC---------HHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCeEeCCcCh
Confidence 9999999999999987 899999999999999999999999865 4899997653
No 5
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=100.00 E-value=6.6e-58 Score=437.79 Aligned_cols=220 Identities=26% Similarity=0.422 Sum_probs=200.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMA 110 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a 110 (321)
++++|+|+|||||||||||..||+++++++||+|++|+|+|++|+|+||+++|++|+||||+|+.+|.+.|++++|++.+
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a 83 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADA 83 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCcEEEEcCchHHHHHHhcccc------c-----------------------------------------
Q 020775 111 SFSIESTLNKGKVPIIVGGSNSYIEALVDDED------Y----------------------------------------- 143 (321)
Q Consensus 111 ~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~------~----------------------------------------- 143 (321)
.+.++++.++|+.||+||||++|+++|++|.. +
T Consensus 84 ~~~i~~i~~~g~~~IlvGGt~~y~~all~g~~~~p~~~~~~R~~l~~~~~~~g~~~l~~~L~~~Dp~~a~~i~~nd~~Ri 163 (323)
T 3crm_A 84 LAAMAKATARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRAAIEAEAQAEGWEALHRQLAEVDPESAARIHPNDPQRL 163 (323)
T ss_dssp HHHHHHHHHTTCEEEEEESCHHHHHHHHCCC-------------------------------------------------
T ss_pred HHHHHHHHHcCCeEEEECCchhhHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHhCHHHHhhcCCCCHHHH
Confidence 99999999999999999999999999998841 0
Q ss_pred ---------------ccc-----------------ccCCeEEEEEeCC-HHHHHHHHHHhHHHHHhccHHHHHHHhhcCC
Q 020775 144 ---------------GFR-----------------WKYDCCFLWVDVS-MPVLRSFVSERVDRMVQNGMIDEVRKFFDPN 190 (321)
Q Consensus 144 ---------------~~r-----------------~~~~~~~i~L~~~-~~~L~~RL~~R~~~Ml~~Gll~Ev~~l~~~~ 190 (321)
++. ..|++++|+|+++ +++|++||++|++.|+++||++||+.|++.+
T Consensus 164 ~RALEv~~~tG~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~~L~~RI~~Rvd~M~~~Gl~~Ev~~L~~~~ 243 (323)
T 3crm_A 164 MRALEVYRLGGVSMSDLRRRQSAEKADFDASGRNQLPYTVAQLAIAPEQRQVLHARIAQRFRQMLEQGFIAEVEALHARS 243 (323)
T ss_dssp ------------------------------------CSEEEEEEEECSSHHHHHHHHHHHHHHHHHTTHHHHHHHHHTCT
T ss_pred HHHHHHHHHHCCCHHHHHhhccccccccccccccCCCCceEEEEEcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcC
Confidence 000 0256788999997 9999999999999999999999999999765
Q ss_pred -CCCCCCccccccHHHHHHhHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcceEEecCc
Q 020775 191 -ADYSKGVRKAIGVPEFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNIHRFDAT 264 (321)
Q Consensus 191 -~~~~~gi~qaIGykE~~~yl~~~~~~~~~~~~~~l~~~ie~ik~~TrqyAkRQ~tW~rr~~~~~~~~i~~lD~t 264 (321)
.+.+.+++|+|||||+.+||+|+.+ +++|++.++.+||||||||+||||+.. +++|+|.+
T Consensus 244 ~~~~~~~~~~aIGyke~~~yl~g~~~---------~~eai~~~~~~Tr~yAKRQ~TWfr~~~-----~~~w~~~~ 304 (323)
T 3crm_A 244 DLHAGLPSIRAVGYRQVWDYLDGKLS---------YAEMTERGIIATRQLAKRQFTWLRSWS-----HLHWMDSL 304 (323)
T ss_dssp TCCTTSSGGGSTTHHHHHHHHTTSSC---------HHHHHHHHHHHHHHHHHHHHHHHHTCS-----SCEEEETT
T ss_pred CCCCCCcchheecHHHHHHHHcCCCC---------HHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCeEecCC
Confidence 3456789999999999999999977 899999999999999999999999874 47999854
No 6
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=100.00 E-value=7.8e-55 Score=419.02 Aligned_cols=217 Identities=34% Similarity=0.550 Sum_probs=199.5
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHH
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMAS 111 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~ 111 (321)
+++|+|+|||||||||||..||+++++++||+|++|+|++++|+|+||+.+|+.|++|||++..++.+.+++.+|.+.+.
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a~ 86 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAE 86 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHHH
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCcEEEEcCchHHHHHHhccc----c---cc----c-----------------------------------
Q 020775 112 FSIESTLNKGKVPIIVGGSNSYIEALVDDE----D---YG----F----------------------------------- 145 (321)
Q Consensus 112 ~~i~~i~~~g~~pIivGGt~~Y~~all~g~----~---~~----~----------------------------------- 145 (321)
..+.++.++|+.||+|||+++|+++++++. + .+ +
T Consensus 87 ~~i~~i~~~g~~~IlvGGt~ly~~~l~~~l~~~~~~~d~~~~~Rlrrrl~r~~~~G~~~l~~~L~~vdP~~a~~I~p~d~ 166 (340)
T 3d3q_A 87 KYIKDITRRGKVPIIAGGTGLYIQSLLYNYAFEDESISEDKMKQVKLKLKELEHLNNNKLHEYLASFDKESAKDIHPNNR 166 (340)
T ss_dssp HHHHHHHHTTCEEEEECCCHHHHHHHHBCSCCC---CCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHCHHHHHHSCTTCH
T ss_pred HHHHHHHhCCCcEEEECChhhhHHHHHhcccccCCCCChHHHHHHHHHHHHHHhcCHHHHHHHHHhhCcHHHhhcCccCc
Confidence 999999999999999999999999987654 1 11 0
Q ss_pred ----c----------------------ccCCeEEEEEeCCHHHHHHHHHHhHHHHHhccHHHHHHHhhcCCCCCCCCccc
Q 020775 146 ----R----------------------WKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMIDEVRKFFDPNADYSKGVRK 199 (321)
Q Consensus 146 ----r----------------------~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml~~Gll~Ev~~l~~~~~~~~~gi~q 199 (321)
| ..|++++|+|++++++|++||++|++.|+++||++||+.|++.+.. +.+++|
T Consensus 167 ~Ri~RALEv~~~tG~~~s~~~~~~~~~~~~~~~~~~L~~~r~~L~~RI~~Rvd~M~~~Gl~~Ev~~L~~~~~~-~~~~~~ 245 (340)
T 3d3q_A 167 KRVLRAIEYYLKTKKLLSSRKKVQQFTENYDTLLIGIEMSRETLYLRINKRVDIMLGHGLFNEVQHLVEQGFE-ASQSMQ 245 (340)
T ss_dssp HHHHHHHHHHHHHCSCSHHHHHHHHHSBCSEEEEEEEECCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTCT-TSSGGG
T ss_pred hhhhhHHHHHHHhCCChHHHhhhccCCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCC-cchhhh
Confidence 0 1367899999999999999999999999999999999999987644 788999
Q ss_pred cccHHHHHHhHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcceEEecC
Q 020775 200 AIGVPEFDLYFKMEPFLDEENQAKLLQQAIQAVKYNTCKLAFRQLEKIRRLMNVKRWNIHRFDA 263 (321)
Q Consensus 200 aIGykE~~~yl~~~~~~~~~~~~~~l~~~ie~ik~~TrqyAkRQ~tW~rr~~~~~~~~i~~lD~ 263 (321)
+|||||+.+||+|+.+ +++|++.++.+||||||||+||||+.. +++|+|.
T Consensus 246 aIGyke~~~yl~g~~~---------~~ea~~~~~~~Tr~yAKRQ~TWfr~~~-----~~~w~~~ 295 (340)
T 3d3q_A 246 AIGYKELVPVIKGNIS---------MENAVEKLKQHSRQYAKRQLTWFKNKM-----NVHWLNK 295 (340)
T ss_dssp STTTTTHHHHHHTSSC---------HHHHHHHHHHHHHHHHHHHHHHHHHTC-----CCEEEET
T ss_pred hccHHHHHHHHcCCCC---------HHHHHHHHHHHHHHHHHHHHHHhCCCC-----CCeeecC
Confidence 9999999999999987 899999999999999999999999875 3789885
No 7
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=100.00 E-value=1.8e-36 Score=279.25 Aligned_cols=213 Identities=14% Similarity=0.145 Sum_probs=181.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCc-cccHhhHHHHHH
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNA-DFTAQNFCDMAS 111 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~-~~~~~~f~~~a~ 111 (321)
++|+|+|||||||||||..||+++++++|++|++|+|+|++++|++|+.+|+.+++||+++..+|.+ .++...|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 81 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI 81 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999988877 899999999999
Q ss_pred HHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCH-HHHHHHHHHhHHHHHhc-----cHHHHHHH
Q 020775 112 FSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSM-PVLRSFVSERVDRMVQN-----GMIDEVRK 185 (321)
Q Consensus 112 ~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~-~~L~~RL~~R~~~Ml~~-----Gll~Ev~~ 185 (321)
..+ ++.++|+.+|++||++.|+++++.+. .+...++++++||+++. +++.+|+.+|.++|+.. ++++|+..
T Consensus 82 ~~i-~~~~~g~~vIl~gg~~~~~~~~~~~~--~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~~ml~~~~~~~~~l~e~~~ 158 (253)
T 2ze6_A 82 FEV-DWRKSEEGLILEGGSISLLNCMAKSP--FWRSGFQWHVKRLRLGDSDAFLTRAKQRVAEMFAIREDRPSLLEELAE 158 (253)
T ss_dssp HHH-HTTTTSSEEEEEECCHHHHHHHHHCT--TTTSSCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCSSSCCHHHHHHH
T ss_pred HHH-HHHhCCCCeEEeccHHHHHHHHHhcc--cccccCceEEEEecchhHHHHHHHHHHHHHHHHhcCcccchHHHHHHH
Confidence 999 88889999999999999999988641 12234567899999986 99999999999999876 99999999
Q ss_pred hhcCCCCCCCCccccccHHHHHHhHhcC-CCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 020775 186 FFDPNADYSKGVRKAIGVPEFDLYFKME-PFLDE--ENQAKLLQQAIQAVKYNTCKLAFRQLEKIRR 249 (321)
Q Consensus 186 l~~~~~~~~~gi~qaIGykE~~~yl~~~-~~~~~--~~~~~~l~~~ie~ik~~TrqyAkRQ~tW~rr 249 (321)
+++.. +...++...+||+|+++|+... .+.+. .....+++++++.|+.+|++|||||.+||..
T Consensus 159 ~~~~p-~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~a~~q~~~~~~ 224 (253)
T 2ze6_A 159 LWNYP-AARPILEDIDGYRCAIRFARKHDLAISQLPNIDAGRHVELIEAIANEYLEHALSQERDFPQ 224 (253)
T ss_dssp HHTST-THHHHHTTSTTHHHHHHHHHHHTCCGGGGGGCCTTHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred hcCCc-chHHHHHHHhhHHHHHHHHHhcCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99862 2224566789999999999632 11110 1112357899999999999999999988864
No 8
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=99.51 E-value=1.5e-15 Score=135.84 Aligned_cols=73 Identities=23% Similarity=0.350 Sum_probs=67.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCcc---ccCCCCCHHhhcCCCccc----ccccCCCcccc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLD---IVTNKITEEEQCGIPHHL----LGIQHPNADFT 102 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~---I~T~k~~~~E~~gvphhl----l~~~~~~~~~~ 102 (321)
..++.|+|+||||||||+||.+|+++.+ ++||.|++|+|++++ |+|+||+ ++||+ +|++++.+.|+
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v~~~~~~~liGtak~~------i~h~lEiRGigiid~~~~f~ 104 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDVYQQDEQTIVGAAPPI------LSHLLEIRGLGIIDVMNLFG 104 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEEEECSTTCEEEECCSS------STTEEEETTTEEEEHHHHHC
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhheeecCCceEEEECCcc------ccccccccceeEEcccccCC
Confidence 3568899999999999999999999987 999999999999999 9999987 89999 99999999999
Q ss_pred HhhHHHH
Q 020775 103 AQNFCDM 109 (321)
Q Consensus 103 ~~~f~~~ 109 (321)
++.|++.
T Consensus 105 ~~~f~~~ 111 (205)
T 2qmh_A 105 AGAVRED 111 (205)
T ss_dssp TTSBCSC
T ss_pred HHHHHhc
Confidence 9998754
No 9
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.32 E-value=8.3e-14 Score=123.51 Aligned_cols=125 Identities=14% Similarity=0.125 Sum_probs=79.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHH
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCD 108 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~ 108 (321)
.+++.+|+|+||+|||||||+..|++.++.. ++..++++|++|...|..|++||+++...+......+.|.+
T Consensus 5 ~~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~--------~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le 76 (208)
T 3tau_A 5 TERGLLIVLSGPSGVGKGTVREAVFKDPETS--------FDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLE 76 (208)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHHSTTCC--------CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cCCCcEEEEECcCCCCHHHHHHHHHhhCCCc--------EEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEE
Confidence 4567899999999999999999999987631 45667789999999999999999876543322211122211
Q ss_pred HH----------HHHHHHHhhcCCcEEEEc---CchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 109 MA----------SFSIESTLNKGKVPIIVG---GSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 109 ~a----------~~~i~~i~~~g~~pIivG---Gt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
.+ ...++++.+.|+.+|+.+ |...+ ... + .....++++.++.++|.+||.+|.
T Consensus 77 ~~~~~~~~yg~~~~~i~~~l~~g~~vild~~~~g~~~~----~~~----~--~~~~~i~i~~ps~~~l~~Rl~~R~ 142 (208)
T 3tau_A 77 YAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQV----RKA----M--PEGIFIFLTPPDLSELKNRIIGRG 142 (208)
T ss_dssp EEEETTEEEEEEHHHHHHHHHTTCCEEEECCHHHHHHH----HHH----C--TTSEEEEEECTTTTTSSCC-----
T ss_pred EEEEccccCCCcHHHHHHHHHcCCeEEEEeeHHHHHHH----HHh----C--CCeEEEEEeCCCHHHHHHHHHhcC
Confidence 11 244677778999888743 32211 110 0 112334445566999999999885
No 10
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.31 E-value=1.2e-12 Score=115.51 Aligned_cols=124 Identities=16% Similarity=0.197 Sum_probs=84.9
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHH--
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMA-- 110 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a-- 110 (321)
+.|+|+||+|||||||...|.+.++.. +...++.+|++|++.|..|+.||+++...+......+.|.+++
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~--------~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~ 73 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDS--------FGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQF 73 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTT--------EEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCC--------eEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEE
Confidence 458999999999999999999887532 3446789999999999999999998754433333333333322
Q ss_pred --------HHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCe-EEEEEeCCHHHHHHHHHHhH
Q 020775 111 --------SFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDC-CFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 111 --------~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~-~~i~L~~~~~~L~~RL~~R~ 171 (321)
.+.++..++.|+.+|+..-. -.++.+-.- ...+. .+|.+.++.++|.+||..|.
T Consensus 74 ~g~~YGt~~~~v~~~l~~g~~vil~id~-~g~~~~k~~------~~~~~~~Ifi~pps~e~L~~RL~~Rg 136 (186)
T 1ex7_A 74 SGNYYGSTVASVKQVSKSGKTCILDIDM-QGVKSVKAI------PELNARFLFIAPPSVEDLKKRLEGRG 136 (186)
T ss_dssp TTEEEEEEHHHHHHHHHHTSEEEEECCH-HHHHHHHTC------GGGCCEEEEEECSCHHHHHHHHHHHC
T ss_pred cCceeeeecceeeehhhCCCEEEecCCH-HHHHHHHHh------cccCceEEEEeCCCHHHHHHHHHhcC
Confidence 35577777888877776432 222222210 11233 34556778999999999995
No 11
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.30 E-value=1.1e-12 Score=112.90 Aligned_cols=112 Identities=16% Similarity=0.134 Sum_probs=76.2
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMA 110 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a 110 (321)
++++|+|+||+||||||+|..||++++..+|++|.+ .++..|.+. .+..+.+....|....
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~--------------~~~~~g~~~-----~~~~~~~g~~~~~~~~ 64 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKE--------------IEKRTGADI-----AWIFEMEGEAGFRRRE 64 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHH--------------HHHHHTSCH-----HHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHH--------------HHHHcCCCh-----hhHHHHhCHHHHHHHH
Confidence 367899999999999999999999999999999986 223333321 1111234455677777
Q ss_pred HHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHH
Q 020775 111 SFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFV 167 (321)
Q Consensus 111 ~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL 167 (321)
...+..+.......|.+||...+-..... .++ -...+|||++|.+++.+|+
T Consensus 65 ~~~~~~~~~~~~~vi~~gg~~~~~~~~~~----~l~--~~~~vi~L~~~~e~l~~Rl 115 (185)
T 3trf_A 65 REMIEALCKLDNIILATGGGVVLDEKNRQ----QIS--ETGVVIYLTASIDTQLKRI 115 (185)
T ss_dssp HHHHHHHHHSSSCEEECCTTGGGSHHHHH----HHH--HHEEEEEEECCHHHHHHHH
T ss_pred HHHHHHHHhcCCcEEecCCceecCHHHHH----HHH--hCCcEEEEECCHHHHHHHH
Confidence 77788887777767767765332111100 111 1247899999999999999
No 12
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.20 E-value=1e-11 Score=108.76 Aligned_cols=121 Identities=17% Similarity=0.173 Sum_probs=76.0
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHH
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDM 109 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~ 109 (321)
.++++|+|+||+||||||++..||+.++..+++.|.+. .+..|.+- .+.........|+..
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~--------------~~~~g~~i-----~~~~~~~~~~~~~~~ 83 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYI--------------EERFHKTV-----GELFTERGEAGFREL 83 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHH--------------HHHHTSCH-----HHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHH--------------HHHhCCcH-----HHHHHhcChHHHHHH
Confidence 45679999999999999999999999999999999852 12222211 011122334456666
Q ss_pred HHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHH-HhHHHHH
Q 020775 110 ASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVS-ERVDRMV 175 (321)
Q Consensus 110 a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~-~R~~~Ml 175 (321)
....++.+...+...|.+||.......... .+ .....+|||+++.+++.+|+. .|..+.+
T Consensus 84 e~~~l~~l~~~~~~vi~~ggg~~~~~~~~~----~l--~~~~~vi~L~~~~e~l~~Rl~~~~~~Rp~ 144 (199)
T 3vaa_A 84 ERNMLHEVAEFENVVISTGGGAPCFYDNME----FM--NRTGKTVFLNVHPDVLFRRLRIAKQQRPI 144 (199)
T ss_dssp HHHHHHHHTTCSSEEEECCTTGGGSTTHHH----HH--HHHSEEEEEECCHHHHHHHHHHTGGGCGG
T ss_pred HHHHHHHHhhcCCcEEECCCcEEccHHHHH----HH--HcCCEEEEEECCHHHHHHHHhcCCCCCCC
Confidence 666777776555544444553211000000 01 113578999999999999998 5544443
No 13
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=99.17 E-value=1e-11 Score=110.63 Aligned_cols=90 Identities=19% Similarity=0.335 Sum_probs=68.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMA 110 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a 110 (321)
++++|+|+||||||||||...|++.++..+ ...++.+|++|+..|..|++||+++...+...+..+.|.+.+
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~--------~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~ 89 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNPEKF--------VYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFG 89 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCTTTE--------ECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCCccE--------EeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhh
Confidence 678999999999999999999999876433 345667999999999999999998765444333333333322
Q ss_pred ----------HHHHHHHhhcCCcEEEEc
Q 020775 111 ----------SFSIESTLNKGKVPIIVG 128 (321)
Q Consensus 111 ----------~~~i~~i~~~g~~pIivG 128 (321)
...++++.++|+.+|+..
T Consensus 90 ~~~~n~YGt~~~~v~~~l~~G~~vildi 117 (197)
T 3ney_A 90 SYQGNMFGTKFETVHQIHKQNKIAILDI 117 (197)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEEC
T ss_pred hhhceecccchhhHHHHHhcCCeEEEEE
Confidence 355788889999888874
No 14
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.10 E-value=3.7e-10 Score=95.72 Aligned_cols=120 Identities=18% Similarity=0.087 Sum_probs=71.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHh-hCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHH
Q 020775 32 EKVLILMGATGTGKSRLSIDMAT-RFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMA 110 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~-~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a 110 (321)
+.+|+|+||+||||||+|..|++ .++..+|+.|.+ .. +..+.+..... .. ..-....+.+..
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~--r~------------~~~~~~~~~~~--~~-~~~~~~~~~~~~ 64 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDY--RQ------------SIMAHEERDEY--KY-TKKKEGIVTGMQ 64 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHH--HH------------HHTTSCCGGGC--CC-CHHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHH--HH------------HhhCCCccchh--hh-chhhhhHHHHHH
Confidence 56899999999999999999999 788899998864 11 11111000000 00 000112233334
Q ss_pred HHHHHHHh---hcCCcEEEEcCchH---HHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhHH
Q 020775 111 SFSIESTL---NKGKVPIIVGGSNS---YIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERVD 172 (321)
Q Consensus 111 ~~~i~~i~---~~g~~pIivGGt~~---Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~~ 172 (321)
...+.... +.|+ .+|+.|+.. |.+.+..-. -...++..++||+++.+++.+|+.+|..
T Consensus 65 ~~~~~~~l~~~~~g~-~vi~d~~~~~~~~~~~l~~~~---~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 128 (181)
T 1ly1_A 65 FDTAKSILYGGDSVK-GVIISDTNLNPERRLAWETFA---KEYGWKVEHKVFDVPWTELVKRNSKRGT 128 (181)
T ss_dssp HHHHHHHHTSCSSCC-EEEECSCCCSHHHHHHHHHHH---HHHTCEEEEEECCCCHHHHHHHHTTCGG
T ss_pred HHHHHHHHhhccCCC-eEEEeCCCCCHHHHHHHHHHH---HHcCCCEEEEEEeCCHHHHHHHHhcccc
Confidence 45566665 5565 555555432 222222100 0012456789999999999999999974
No 15
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.08 E-value=5.4e-11 Score=104.56 Aligned_cols=126 Identities=20% Similarity=0.306 Sum_probs=81.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCcc-----c--
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNAD-----F-- 101 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~-----~-- 101 (321)
+.++++|+|+||+|||||||+..|++.++.. ++..+..+|+++...|..|..+++++....... |
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~--------~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSR--------FRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLE 80 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTTT--------EEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEE
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCccc--------eeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEE
Confidence 4567899999999999999999999998531 334567899999988888988887643211100 0
Q ss_pred --c-HhhHHHHHHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccC---CeEEEEEe-CCHHHHHHHHHHhH
Q 020775 102 --T-AQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKY---DCCFLWVD-VSMPVLRSFVSERV 171 (321)
Q Consensus 102 --~-~~~f~~~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~---~~~~i~L~-~~~~~L~~RL~~R~ 171 (321)
. .+.+.......++.+.+.|+..|+.+... -...+ +..+ +..+|||+ ++.++|.+|+.+|.
T Consensus 81 ~~~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~-~~~~l--------~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~ 148 (204)
T 2qor_A 81 FDKYANNFYGTLKSEYDLAVGEGKICLFEMNIN-GVKQL--------KESKHIQDGIYIFVKPPSIDILLGRLKNRN 148 (204)
T ss_dssp EEEETTEEEEEEHHHHHHHHHTTCEEEEECCHH-HHHHH--------HHCSSCSCCEEEEEECSCHHHHHHHHHTCT
T ss_pred eHHhCCCeecCCHHHHHHHHHcCCeEEEEECHH-HHHHH--------HHhcCCCCeEEEEEcCCCHHHHHHHHHHcC
Confidence 0 00011001134556667888776654211 11222 1222 45788998 89999999998885
No 16
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=99.06 E-value=3.9e-11 Score=103.72 Aligned_cols=120 Identities=14% Similarity=0.228 Sum_probs=71.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHH-
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDM- 109 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~- 109 (321)
++++++|+||||||||||+..|++.++. .++..++++|++|+..|..|++|++++...+...+....|...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~--------~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~~ 75 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD--------RFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYG 75 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT--------TEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc--------cEEEeeeccCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEEE
Confidence 5679999999999999999999998652 1234567889999999999999988754321111111111110
Q ss_pred ---------HHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCC-HHHHHHH
Q 020775 110 ---------ASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVS-MPVLRSF 166 (321)
Q Consensus 110 ---------a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~-~~~L~~R 166 (321)
....++++.+.|+.+|+..... .+..+.. ...+..+|++.++ .++|.+|
T Consensus 76 ~~~~n~yg~~~~~i~~~l~~g~~vil~id~~-g~~~~~~-------~~~~~~~ifi~~p~~~~l~~R 134 (180)
T 1kgd_A 76 SHEDAMYGTKLETIRKIHEQGLIAILDVEPQ-ALKVLRT-------AEFAPFVVFIAAPTITPGLNE 134 (180)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCGG-GHHHHSS-------TTTCEEEEEEECCSCCTTSCC
T ss_pred EEcCccccccHHHHHHHHHCCCeEEEEECHH-HHHHHHH-------hCCCcEEEEEECCCHHHHHhh
Confidence 1234667778899888863321 1112211 1124566777754 6666665
No 17
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.03 E-value=1.3e-09 Score=95.16 Aligned_cols=116 Identities=20% Similarity=0.266 Sum_probs=70.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMA 110 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a 110 (321)
++++|+|+|++||||||++..|++.++..+|++|.+. .... ......|... .......+.
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~--~~~~------~~~~~~g~~~---------~~~~~~~~~--- 76 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALH--PPEN------IRKMSEGIPL---------TDDDRWPWL--- 76 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGC--CHHH------HHHHHHTCCC---------CHHHHHHHH---
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCc--chhh------HHHHhcCCCC---------CchhhHHHH---
Confidence 4679999999999999999999999999999999861 1000 0000112110 111112222
Q ss_pred HHHHHHHhhcCCcEEEEcCc--hHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhHHH
Q 020775 111 SFSIESTLNKGKVPIIVGGS--NSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERVDR 173 (321)
Q Consensus 111 ~~~i~~i~~~g~~pIivGGt--~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~~~ 173 (321)
..+.+....|...|+.++. ..+.+.+..- ...+..+|+|+++.+++.+|+.+|...
T Consensus 77 -~~l~~~~~~~~~vivd~~~~~~~~~~~l~~~------~~~~~~vi~l~~~~e~~~~Rl~~R~~~ 134 (202)
T 3t61_A 77 -AAIGERLASREPVVVSCSALKRSYRDKLRES------APGGLAFVFLHGSESVLAERMHHRTGH 134 (202)
T ss_dssp -HHHHHHHTSSSCCEEECCCCSHHHHHHHHHT------STTCCEEEEEECCHHHHHHHHHHHHSS
T ss_pred -HHHHHHHhcCCCEEEECCCCCHHHHHHHHHh------cCCCeEEEEEeCCHHHHHHHHHHhhcc
Confidence 2334444566655655442 2222222211 122358999999999999999999643
No 18
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.02 E-value=8.8e-10 Score=94.64 Aligned_cols=118 Identities=19% Similarity=0.220 Sum_probs=70.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHh---h
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQ---N 105 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~---~ 105 (321)
++++.+|+|+|++||||||++..|+++++..+++.|.+. ++..+ .++.. ...+... .
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~--------------~~~~~----~~~~~--~~~~~~~~~~~ 61 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFK--------------EVMFD----GLGWS--DREWSRRVGAT 61 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHH--------------HHHHH----HHCCC--SHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHH--------------HHHHH----hcCcc--chHHHHHhhHH
Confidence 356789999999999999999999999999999988751 11110 00100 0111100 0
Q ss_pred HHHHHHHHHHHHhhcCCcEEEEcCchHHHH---HHhccccccccc--cCCeEEEEEeCCHHHHHHHHHHhHH
Q 020775 106 FCDMASFSIESTLNKGKVPIIVGGSNSYIE---ALVDDEDYGFRW--KYDCCFLWVDVSMPVLRSFVSERVD 172 (321)
Q Consensus 106 f~~~a~~~i~~i~~~g~~pIivGGt~~Y~~---all~g~~~~~r~--~~~~~~i~L~~~~~~L~~RL~~R~~ 172 (321)
........+..+.+.|...|+.+.. .+-. .+ . .+.. ..+..+|||+++.+++.+|+.+|..
T Consensus 62 ~~~~~~~~~~~~l~~g~~vi~d~~~-~~~~~~~~~-~----~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~ 127 (193)
T 2rhm_A 62 AIMMLYHTAATILQSGQSLIMESNF-RVDLDTERM-Q----NLHTIAPFTPIQIRCVASGDVLVERILSRIA 127 (193)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEECC-CHHHHHHHH-H----HHHHHSCCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEEecCC-CCHHHHHHH-H----HHHHhcCCeEEEEEEeCCHHHHHHHHHHhcC
Confidence 0111223344555677755555443 3211 11 0 0111 2356789999999999999998863
No 19
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.01 E-value=2.9e-09 Score=92.44 Aligned_cols=124 Identities=13% Similarity=0.160 Sum_probs=72.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccH------
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTA------ 103 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~------ 103 (321)
+++.+++|+||+|||||||+..|+..++ .++-....++.++...+..|+.+++.+...+.. .++
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 74 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALA---------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQA-MVKEGAFLE 74 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSS---------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHH-HHHHTCEEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC---------CeEEeceeccCCCchhHhcCceEEeccHHHHHH-HHhcCcEEe
Confidence 4578999999999999999999999875 234444566777777777888776654211000 000
Q ss_pred -----hhHHHHHHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEE-eCCHHHHHHHHHHhH
Q 020775 104 -----QNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWV-DVSMPVLRSFVSERV 171 (321)
Q Consensus 104 -----~~f~~~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L-~~~~~~L~~RL~~R~ 171 (321)
+.+.......+.++...|+.+|+.+ ....+..+.. ......++++ .++.+++.+||.+|-
T Consensus 75 ~~~~~~~~~~~~~~~i~~~l~~g~~vi~d~-~~~~~~~~~~-------~~~~~~~v~~~~~~~e~l~~Rl~~R~ 140 (205)
T 3tr0_A 75 HATIYERHYGTEKDWVLRQLKAGRDVLLEI-DWQGARQIRE-------LFPPALSIFILPPSIEALRERLIKRR 140 (205)
T ss_dssp EEEETTEEEEEEHHHHHHHHHTTCEEEEEC-CHHHHHHHHH-------HCTTCEEEEEECSCHHHHHHHHHTCT
T ss_pred eeeeecccccchHHHHHHHHHcCCeEEEEE-CHHHHHHHHH-------hCCCcEEEEEECcCHHHHHHHHHHhC
Confidence 0000000134566667787666654 2111111111 0112334444 557999999999984
No 20
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.00 E-value=2.5e-09 Score=90.92 Aligned_cols=125 Identities=18% Similarity=0.164 Sum_probs=68.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEE--ecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEII--NSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCD 108 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiI--saDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~ 108 (321)
++.+|+|+|++||||||++..|+++++..++ +.|.+. ..+. .+. ..+..|+ ++.+.........|..
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~--~~~~---~~~-~~~~~~~-----~~~~~~~~~~~~~~~~ 70 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLI--EAMP---LKM-QSAEGGI-----EFDADGGVSIGPEFRA 70 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHH--HHSC---GGG-GTSTTSE-----EECTTSCEEECHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHh--hhcc---hhh-ccchhhc-----cccCCCccccchhHHH
Confidence 3578999999999999999999999986554 567541 1000 000 0011111 1111111122233332
Q ss_pred ---HHHHHHHHHhhcCCcEEEEcCchH---H-HHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhHH
Q 020775 109 ---MASFSIESTLNKGKVPIIVGGSNS---Y-IEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERVD 172 (321)
Q Consensus 109 ---~a~~~i~~i~~~g~~pIivGGt~~---Y-~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~~ 172 (321)
.....+..+.+.|...|+.+ +.+ . .+.+.. .+ ....+.++||+++.+++.+|+.+|.+
T Consensus 71 ~~~~~~~~~~~~~~~g~~vi~~~-~~~~~~~~~~~~~~----~~-~~~~~~~v~l~~~~e~l~~R~~~r~~ 135 (178)
T 1qhx_A 71 LEGAWAEGVVAMARAGARIIIDD-VFLGGAAAQERWRS----FV-GDLDVLWVGVRCDGAVAEGRETARGD 135 (178)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEE-CCTTTHHHHHHHHH----HH-TTCCEEEEEEECCHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHHhcCCeEEEEe-ccccChHHHHHHHH----Hh-cCCcEEEEEEECCHHHHHHHHHhhCC
Confidence 22334566666666555544 311 1 111111 01 12346788999999999999998854
No 21
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.00 E-value=1.2e-09 Score=93.97 Aligned_cols=126 Identities=13% Similarity=0.169 Sum_probs=70.9
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHH
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCD 108 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~ 108 (321)
+.++++|+|+|++||||||+|..||++++..+|+.|.+ ++...- .+.+..+.. ...+. + .+.........
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~--~~~~~~-~~~~~~~~i---~~~~~---~-g~~~~~~~~~~ 75 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDL--LRSEVS-SGSARGKKL---SEIME---K-GQLVPLETVLD 75 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHH--HHHHHH-TTCHHHHHH---HHHHH---T-TCCCCHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHH--HHHHHH-cCChHHHHH---HHHHH---c-CCcCCHHHHHH
Confidence 34678999999999999999999999999999999974 222100 000000000 00010 0 11111122223
Q ss_pred HHHHHHHHHhhcCCcEEEEcCchH---HHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 109 MASFSIESTLNKGKVPIIVGGSNS---YIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 109 ~a~~~i~~i~~~g~~pIivGGt~~---Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
.....+....+.|+..|+.| ... +.+.+... + .....+|+|++|.+++.+|+..|.
T Consensus 76 ~~~~~i~~~~~~~~~vi~d~-~~~~~~~~~~~~~~----~--~~~~~vi~l~~~~e~~~~R~~~R~ 134 (196)
T 2c95_A 76 MLRDAMVAKVNTSKGFLIDG-YPREVQQGEEFERR----I--GQPTLLLYVDAGPETMTQRLLKRG 134 (196)
T ss_dssp HHHHHHHHHTTTCSCEEEES-CCCSHHHHHHHHHH----T--CCCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCcEEEeC-CCCCHHHHHHHHHh----c--CCCCEEEEEECCHHHHHHHHHccC
Confidence 33344555555666555544 211 11111110 1 123478999999999999998884
No 22
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.99 E-value=2e-10 Score=98.61 Aligned_cols=113 Identities=16% Similarity=0.225 Sum_probs=68.8
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHH
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMAS 111 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~ 111 (321)
+++|+|+|++||||||+|..||++++..+|++|.+ ++. ..|.+.. ++. .......|.+...
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~--~~~------------~~g~~~~--~~~---~~~g~~~~~~~~~ 62 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVA--IEQ------------RTGRSIA--DIF---ATDGEQEFRRIEE 62 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHH--HHH------------HHSSCHH--HHH---HHHCHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchH--HHH------------HcCCCHH--HHH---HHhChHHHHHHHH
Confidence 35799999999999999999999999999999985 221 1121100 000 0111234555444
Q ss_pred HHHHHHhhcCCcEEEEcCchHHHHHHhcccc-ccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 112 FSIESTLNKGKVPIIVGGSNSYIEALVDDED-YGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 112 ~~i~~i~~~g~~pIivGGt~~Y~~all~g~~-~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
..++.+.......+..||. . +++... ..++ ...+|||++|.+++.+|+.+|.
T Consensus 63 ~~~~~~~~~~~~vi~~g~~-~----v~~~~~~~~l~---~~~vV~L~~~~e~~~~Rl~~r~ 115 (184)
T 2iyv_A 63 DVVRAALADHDGVLSLGGG-A----VTSPGVRAALA---GHTVVYLEISAAEGVRRTGGNT 115 (184)
T ss_dssp HHHHHHHHHCCSEEECCTT-G----GGSHHHHHHHT---TSCEEEEECCHHHHHHHTTCCC
T ss_pred HHHHHHHhcCCeEEecCCc-E----EcCHHHHHHHc---CCeEEEEeCCHHHHHHHHhCCC
Confidence 5566665555444444542 2 122100 0111 2368899999999999998773
No 23
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.98 E-value=2.2e-10 Score=97.89 Aligned_cols=108 Identities=17% Similarity=0.217 Sum_probs=67.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHHH
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMASF 112 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~~ 112 (321)
+.|+|+||+||||||+|..||++++..+++.|.+ ++ +..|.+-. ++. .......|.+....
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~--~~------------~~~g~~~~--~~~---~~~g~~~~~~~~~~ 65 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFL--IE------------QKFNQKVS--EIF---EQKRENFFREQEQK 65 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHH--HH------------HHHTSCHH--HHH---HHHCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHH--HH------------HHcCCCHH--HHH---HHcCHHHHHHHHHH
Confidence 4799999999999999999999999999999985 22 11121100 000 01122345444445
Q ss_pred HHHHHhhcCCcEEEE-cCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHh
Q 020775 113 SIESTLNKGKVPIIV-GGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSER 170 (321)
Q Consensus 113 ~i~~i~~~g~~pIiv-GGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R 170 (321)
.++.+...+. .|+. ||.. +++ . .++. ...+|||+++.+++.+|+.+|
T Consensus 66 ~~~~l~~~~~-~vi~~g~~~-----~~~-~--~l~~--~~~~i~l~~~~e~~~~R~~~r 113 (175)
T 1via_A 66 MADFFSSCEK-ACIATGGGF-----VNV-S--NLEK--AGFCIYLKADFEYLKKRLDKD 113 (175)
T ss_dssp HHHHHTTCCS-EEEECCTTG-----GGS-T--TGGG--GCEEEEEECCHHHHTTCCCGG
T ss_pred HHHHHHccCC-EEEECCCCE-----ehh-h--HHhc--CCEEEEEeCCHHHHHHHHhcc
Confidence 5666654444 4454 5431 122 1 1221 236899999999999999877
No 24
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.97 E-value=1.1e-09 Score=92.64 Aligned_cols=110 Identities=20% Similarity=0.338 Sum_probs=68.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHHH
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMASF 112 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~~ 112 (321)
.+|+|+|++||||||+|..||++++.+++++|.+ .+ +..|.+.. ++. ..+....|.+...+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~--~~------------~~~g~~~~--~~~---~~~g~~~~~~~~~~ 68 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMI--IS------------ERVGLSVR--EIF---EELGEDNFRMFEKN 68 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHH--HH------------HHHTSCHH--HHH---HHTCHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHH--HH------------HHhCCCHH--HHH---HHhCHHHHHHHHHH
Confidence 5899999999999999999999999999999985 22 11121100 000 12233345554455
Q ss_pred HHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHh
Q 020775 113 SIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSER 170 (321)
Q Consensus 113 ~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R 170 (321)
.+..+.+.+...|+.+|.++ ++. . .+ +....+|||++|.+++.+|+.+|
T Consensus 69 ~l~~~~~~~~~~Vi~~g~g~----~~~-~--~l--~~~~~vi~l~~~~e~~~~Rl~~r 117 (168)
T 1zuh_A 69 LIDELKTLKTPHVISTGGGI----VMH-E--NL--KGLGTTFYLKMDFETLIKRLNQK 117 (168)
T ss_dssp HHHHHHTCSSCCEEECCGGG----GGC-G--GG--TTSEEEEEEECCHHHHHHHHCC-
T ss_pred HHHHHHhcCCCEEEECCCCE----ech-h--HH--hcCCEEEEEECCHHHHHHHHhcc
Confidence 56666554443145544332 121 1 12 12347899999999999999887
No 25
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.96 E-value=5.4e-09 Score=88.85 Aligned_cols=115 Identities=21% Similarity=0.345 Sum_probs=69.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHh-hcCCCcccccccCCCccccHhhHHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEE-QCGIPHHLLGIQHPNADFTAQNFCDM 109 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E-~~gvphhll~~~~~~~~~~~~~f~~~ 109 (321)
++.+|+|+||+||||||++..|++.+|..+++.|.+. +... ..+ ..|... .+ .....+...
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~--~~~~-------~~~~~~g~~~--------~~-~~~~~~~~~ 68 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLH--PRRN-------IEKMASGEPL--------ND-DDRKPWLQA 68 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGC--CHHH-------HHHHHTTCCC--------CH-HHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCcccc--chHH-------HHHhhcCcCC--------Cc-cccccHHHH
Confidence 4679999999999999999999999999999999852 1100 001 112111 01 111122333
Q ss_pred HHHHHHHHhhcCCcEEEEcCc--hHHHHHHhcccccccccc-CCeEEEEEeCCHHHHHHHHHHhH
Q 020775 110 ASFSIESTLNKGKVPIIVGGS--NSYIEALVDDEDYGFRWK-YDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 110 a~~~i~~i~~~g~~pIivGGt--~~Y~~all~g~~~~~r~~-~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
....+..+...+...|+..|. .-+.+. ++.. .++.+|||++|.+++.+|+.+|-
T Consensus 69 ~~~~~~~~~~~~~~~vi~~~~~~~~~~~~--------l~~~~~~~~vv~l~~~~e~~~~R~~~R~ 125 (175)
T 1knq_A 69 LNDAAFAMQRTNKVSLIVCSALKKHYRDL--------LREGNPNLSFIYLKGDFDVIESRLKARK 125 (175)
T ss_dssp HHHHHHHHHHHCSEEEEECCCCSHHHHHH--------HHTTCTTEEEEEEECCHHHHHHHHHTST
T ss_pred HHHHHHHHHhcCCcEEEEeCchHHHHHHH--------HHhcCCCEEEEEEECCHHHHHHHHHhcc
Confidence 334445555556555555332 111111 1111 24579999999999999999885
No 26
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.95 E-value=9.3e-10 Score=101.15 Aligned_cols=113 Identities=17% Similarity=0.218 Sum_probs=72.8
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHH
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMAS 111 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~ 111 (321)
+..|+|+|++||||||++..||+.++..++++|.+ ++... +..+..+. .+.+....|++...
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~--~~~~~---~g~~i~~i-------------~~~~ge~~fr~~e~ 109 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTL--IEQAM---KGTSVAEI-------------FEHFGESVFREKET 109 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHH--HHHHS---TTSCHHHH-------------HHHHCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHH--HHHHh---cCccHHHH-------------HHHhCcHHHHHHHH
Confidence 78999999999999999999999999999999975 22110 00111110 12344556776666
Q ss_pred HHHHHHhhc-CCcEEEEcCc-hHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHh
Q 020775 112 FSIESTLNK-GKVPIIVGGS-NSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSER 170 (321)
Q Consensus 112 ~~i~~i~~~-g~~pIivGGt-~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R 170 (321)
+.+.++.+. ....|..||. ..+-+.. ..++ ...+|||+++.+++.+|+.+|
T Consensus 110 ~~l~~l~~~~~~~Via~GgG~v~~~~~~-----~~l~---~~~vV~L~a~~e~l~~Rl~~~ 162 (250)
T 3nwj_A 110 EALKKLSLMYHQVVVSTGGGAVIRPINW-----KYMH---KGISIWLDVPLEALAHRIAAV 162 (250)
T ss_dssp HHHHHHHHHCSSEEEECCGGGGGSHHHH-----HHHT---TSEEEEEECCHHHHHHHHHC-
T ss_pred HHHHHHHhhcCCcEEecCCCeecCHHHH-----HHHh---CCcEEEEECCHHHHHHHHhhc
Confidence 677777665 4544555543 2111110 0111 246899999999999999863
No 27
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.94 E-value=4.2e-09 Score=90.10 Aligned_cols=110 Identities=15% Similarity=0.179 Sum_probs=65.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHH
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDM 109 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~ 109 (321)
.++++|+|+|++||||||++..|++.++..+++.|.+ ++. . .. ....+.......+....+.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~--~~~------------~-~~-~~~~~~~~~~~~~~~~~~~~- 71 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDL--ARE------------E-QL-YDGYDEEYDCPILDEDRVVD- 71 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHH--HHH------------H-TC-EEEEETTTTEEEECHHHHHH-
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHH--Hhh------------c-ch-hhhhhhhhcCccCChHHHHH-
Confidence 3567899999999999999999999999999999875 111 1 00 00011000001112222332
Q ss_pred HHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 110 ASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 110 a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
.+..+.+.|.. |+.+.... .+...+...+|||+++.+++.+|+.+|.
T Consensus 72 ---~~~~~~~~g~~-vv~~~~~~-----------~~~~~~~~~vi~L~~~~e~l~~R~~~r~ 118 (180)
T 3iij_A 72 ---ELDNQMREGGV-IVDYHGCD-----------FFPERWFHIVFVLRTDTNVLYERLETRG 118 (180)
T ss_dssp ---HHHHHHHHCCE-EEECSCCT-----------TSCGGGCSEEEEEECCHHHHHHHHHHTT
T ss_pred ---HHHHHHhcCCE-EEEechhh-----------hcchhcCCEEEEEECCHHHHHHHHHHcC
Confidence 23344445543 33322210 1112224578999999999999999884
No 28
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.93 E-value=3.3e-09 Score=97.02 Aligned_cols=128 Identities=24% Similarity=0.309 Sum_probs=76.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhh---CCCEEE--ecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHh
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATR---FPAEII--NSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQ 104 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~---l~~eiI--saDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~ 104 (321)
.++.+|+|+|++||||||+|..|++. .|..++ +.|.+. ..+ .+ + ......
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~--~~l------------~~-------~----~~~~e~ 56 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIR--ESF------------PV-------W----KEKYEE 56 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHH--TTS------------SS-------C----CGGGHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHH--HHH------------hh-------h----hHHHHH
Confidence 35679999999999999999999998 677766 777531 111 11 0 111222
Q ss_pred hHHHHHHHHHHHHhhcCCcEEEEcCchHHH---HHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhHHHHHhccHHH
Q 020775 105 NFCDMASFSIESTLNKGKVPIIVGGSNSYI---EALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERVDRMVQNGMID 181 (321)
Q Consensus 105 ~f~~~a~~~i~~i~~~g~~pIivGGt~~Y~---~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml~~Gll~ 181 (321)
.|.......+....+. ..+|+.|+.+|- +.+..- .-....+.++|||++|.+++.+|+.+|.. ......++
T Consensus 57 ~~~~~~~~~i~~~l~~--~~vIiD~~~~~~~~~~~l~~~---a~~~~~~~~vi~l~~~~e~~~~R~~~R~~-~~~~~~l~ 130 (260)
T 3a4m_A 57 FIKKSTYRLIDSALKN--YWVIVDDTNYYNSMRRDLINI---AKKYNKNYAIIYLKASLDVLIRRNIERGE-KIPNEVIK 130 (260)
T ss_dssp HHHHHHHHHHHHHHTT--SEEEECSCCCSHHHHHHHHHH---HHHTTCEEEEEEEECCHHHHHHHHHHTTC-SSCHHHHH
T ss_pred HHHHHHHHHHHHHhhC--CEEEEeCCcccHHHHHHHHHH---HHHcCCCEEEEEEeCCHHHHHHHHHhCCC-CCCHHHHH
Confidence 3444444556665544 566666665432 111110 00123457899999999999999999852 12234555
Q ss_pred HHHHhhc
Q 020775 182 EVRKFFD 188 (321)
Q Consensus 182 Ev~~l~~ 188 (321)
++..-|+
T Consensus 131 ~~~~~~e 137 (260)
T 3a4m_A 131 KMYEKFD 137 (260)
T ss_dssp HHHHHCC
T ss_pred HHHHHhc
Confidence 5554444
No 29
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.92 E-value=1.7e-09 Score=91.40 Aligned_cols=111 Identities=14% Similarity=0.217 Sum_probs=65.8
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHHH
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMASF 112 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~~ 112 (321)
++|+|+|++||||||+|..||++++..+++.|.+ ++ +..|.+.. ++. .......|.+....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~--~~------------~~~g~~~~--~~~---~~~~~~~~~~~~~~ 63 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIF--MQ------------HTSGMTVA--DVV---AAEGWPGFRRRESE 63 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHH--HH------------HHHCSCHH--HHH---HHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHH--HH------------HHhCCCHH--HHH---HHcCHHHHHHHHHH
Confidence 5799999999999999999999999999999975 22 11222110 000 01112234433334
Q ss_pred HHHHHhhcCCcEEEE-cCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHH--Hh
Q 020775 113 SIESTLNKGKVPIIV-GGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVS--ER 170 (321)
Q Consensus 113 ~i~~i~~~g~~pIiv-GGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~--~R 170 (321)
.+..+. .+. .|+. ||.......... .++. ...+|||++|.+++.+|+. .|
T Consensus 64 ~~~~l~-~~~-~vi~~g~~~~~~~~~~~----~l~~--~~~~i~l~~~~e~~~~R~~~~~r 116 (173)
T 1e6c_A 64 ALQAVA-TPN-RVVATGGGMVLLEQNRQ----FMRA--HGTVVYLFAPAEELALRLQASLQ 116 (173)
T ss_dssp HHHHHC-CSS-EEEECCTTGGGSHHHHH----HHHH--HSEEEEEECCHHHHHHHHHHHHC
T ss_pred HHHHhh-cCC-eEEECCCcEEeCHHHHH----HHHc--CCeEEEEECCHHHHHHHHhhccC
Confidence 455554 333 4554 543211111111 1111 2378999999999999998 66
No 30
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.88 E-value=1.8e-08 Score=88.11 Aligned_cols=118 Identities=19% Similarity=0.278 Sum_probs=68.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHH
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDM 109 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~ 109 (321)
.++.+|+|+||+|||||||+..|++.+|..+++.|.+. +...+ .....|. . + ++.....+...
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~--~~~~~------~~~~~g~-------~-~-~~~~~~~~~~~ 89 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFH--SPENI------ATMQRGI-------P-L-TDEDRWPWLRS 89 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGS--CHHHH------HHHHTTC-------C-C-CHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccc--cHHHH------HHHhcCC-------C-C-CCcccccHHHH
Confidence 35789999999999999999999999999999988751 10000 0001111 1 1 11112222223
Q ss_pred HHHHHHHHhhcCCcEEEEcCchH--HHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 110 ASFSIESTLNKGKVPIIVGGSNS--YIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 110 a~~~i~~i~~~g~~pIivGGt~~--Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
....+......|...|+..+... +.+ .+.. ...+..+|||+++.+++.+|+.+|.
T Consensus 90 ~~~~~~~~~~~g~~viid~~~~~~~~~~-~l~~------~~~~~~vv~l~~~~e~l~~Rl~~R~ 146 (200)
T 4eun_A 90 LAEWMDARADAGVSTIITCSALKRTYRD-VLRE------GPPSVDFLHLDGPAEVIKGRMSKRE 146 (200)
T ss_dssp HHHHHHHHHHTTCCEEEEECCCCHHHHH-HHTT------SSSCCEEEEEECCHHHHHHHHTTCS
T ss_pred HHHHHHHHHhcCCCEEEEchhhhHHHHH-HHHH------hCCceEEEEEeCCHHHHHHHHHhcc
Confidence 33333444456665565544211 111 1111 0114578999999999999998884
No 31
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.86 E-value=2.4e-08 Score=90.87 Aligned_cols=129 Identities=14% Similarity=0.120 Sum_probs=74.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC--CEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhH
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP--AEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNF 106 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~--~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f 106 (321)
..++.+|+|+||+||||||+|..|++.++ ..++++|.+ .+.+ +...+... -.+. ....+....+
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~--r~~~------~~~~~i~~----~~g~--~~~~~~~~~~ 94 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF--RSQH------PHYLELQQ----EYGK--DSVEYTKDFA 94 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG--GTTS------TTHHHHHT----TCSS--TTHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH--HHhc------hhHHHHHH----HcCc--hHHHHhhHHH
Confidence 34578999999999999999999999987 467788864 2221 11111100 0000 0011111113
Q ss_pred HHHHHHHHHHHhhcCCcEEEEcCchH--HHHHHhcccccccc-ccCCeEEEEEeCCHHHHHHHHHHhHHHHH
Q 020775 107 CDMASFSIESTLNKGKVPIIVGGSNS--YIEALVDDEDYGFR-WKYDCCFLWVDVSMPVLRSFVSERVDRMV 175 (321)
Q Consensus 107 ~~~a~~~i~~i~~~g~~pIivGGt~~--Y~~all~g~~~~~r-~~~~~~~i~L~~~~~~L~~RL~~R~~~Ml 175 (321)
.+.+...++.+.+.|...|+.|+-.- +...+.. .++ ..+.+.++++.++.+++.+|+..|..++.
T Consensus 95 ~~~~~~~~~~~~~~g~~vVid~~~~~~~~~~~~~~----~l~~~g~~v~lv~l~~~~e~~~~R~~~R~~~~~ 162 (253)
T 2p5t_B 95 GKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQ----LLKNKGYEVQLALIATKPELSYLSTLIRYEELY 162 (253)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHH----HHHHTTCEEEEEEECCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHH----HHHHCCCcEEEEEEeCCHHHHHHHHHHHHHHHH
Confidence 33344556666667766666654321 2222221 011 23456677889999999999999976543
No 32
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.86 E-value=4.9e-09 Score=89.34 Aligned_cols=119 Identities=14% Similarity=0.242 Sum_probs=60.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEE-ecCcceeecCccccCCCCCHHhhcCCCcccccccCCCcccc-HhhHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEII-NSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFT-AQNFCD 108 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiI-saDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~-~~~f~~ 108 (321)
++.+|+|+|++||||||+|..|+++++..++ +.|.+ |..+ .+. .+ +....|. ...+.+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~----g~~i-------~~~--~~-------~g~~~~~~~~~~~~ 63 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEM----GQAL-------RKL--TP-------GFSGDPQEHPMWIP 63 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHH----HHHH-------HHT--ST-------TCCSCGGGSTTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhh----HHHH-------HHh--Cc-------cccchhhhhHHHHH
Confidence 4579999999999999999999999998877 32111 0000 000 00 0000110 112333
Q ss_pred HHHHHHHHHhhc-CCcEEEEcCchH---HHHHHhcccccccc-ccCCeEEEEEeCCHHHHHHHHHHhHHHH
Q 020775 109 MASFSIESTLNK-GKVPIIVGGSNS---YIEALVDDEDYGFR-WKYDCCFLWVDVSMPVLRSFVSERVDRM 174 (321)
Q Consensus 109 ~a~~~i~~i~~~-g~~pIivGGt~~---Y~~all~g~~~~~r-~~~~~~~i~L~~~~~~L~~RL~~R~~~M 174 (321)
...+.+..+.+. |. .|++.++.. |.+.+.. .++ ....+.+|+|+++.+++.+|+.+|..+.
T Consensus 64 ~~~~~i~~~l~~~g~-~vi~d~~~~~~~~~~~~~~----~l~~~~~~~~~i~l~~~~e~~~~R~~~R~~r~ 129 (183)
T 2vli_A 64 LMLDALQYASREAAG-PLIVPVSISDTARHRRLMS----GLKDRGLSVHHFTLIAPLNVVLERLRRDGQPQ 129 (183)
T ss_dssp HHHHHHHHHHHHCSS-CEEEEECCCCHHHHHHHHH----HHHHTTCCCEEEEEECCHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHhCCC-cEEEeeeccCHHHHHHHHH----HHHhcCCceEEEEEeCCHHHHHHHHHhccccc
Confidence 334445555555 54 444555431 2222211 111 1234467999999999999999996443
No 33
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.86 E-value=2.4e-08 Score=86.83 Aligned_cols=126 Identities=12% Similarity=0.174 Sum_probs=68.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccc-cccCCCccccHhhHHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLL-GIQHPNADFTAQNFCDM 109 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll-~~~~~~~~~~~~~f~~~ 109 (321)
++.+|+|+|++||||||++..|++.++..+|++|.+ ++...--.+.+..+... ..+. +...+. ......
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~--~~~~~~~~~~~~~~~i~---~~~~~g~~~~~-----~~~~~~ 83 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDL--LRAEQGRAGSQYGELIK---NCIKEGQIVPQ-----EITLAL 83 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHH--HHHHHHSTTCSCHHHHH---HHHHTTCCCCH-----HHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHH--HHHHHhccCCHHHHHHH---HHHHcCCcCCH-----HHHHHH
Confidence 457899999999999999999999999999999974 33210000001111110 0000 001110 111122
Q ss_pred HHHHHHHHhhcCCcEEEEcCchHHHH--HHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 110 ASFSIESTLNKGKVPIIVGGSNSYIE--ALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 110 a~~~i~~i~~~g~~pIivGGt~~Y~~--all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
..+.+....+.|+..+++.|...-++ .++.. .+ .. ...+|+|++|.+++.+|+.+|.
T Consensus 84 l~~~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~---~~-~~-~~~~i~l~~~~e~~~~Rl~~R~ 142 (203)
T 1ukz_A 84 LRNAISDNVKANKHKFLIDGFPRKMDQAISFER---DI-VE-SKFILFFDCPEDIMLERLLERG 142 (203)
T ss_dssp HHHHHHHHHHTTCCEEEEETCCCSHHHHHHHHH---HT-CC-CSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHhhhccCCCeEEEeCCCCCHHHHHHHHH---hc-CC-CCEEEEEECCHHHHHHHHHhcc
Confidence 23344555566644455544321011 11110 01 11 3468999999999999999884
No 34
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.85 E-value=5.5e-09 Score=97.39 Aligned_cols=124 Identities=13% Similarity=0.075 Sum_probs=70.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC--CCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHH
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF--PAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFC 107 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l--~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~ 107 (321)
.++.+|+|+||+||||||++..|++++ +..+||+|.+ +..+ +...++.. .+......+....|.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~--R~~~------~~~~~~~~------~~~~~a~~~~~~~~~ 96 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF--KQQH------PNFDELVK------LYEKDVVKHVTPYSN 96 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH--HTTS------TTHHHHHH------HHGGGCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh--HHhc------hhhHHHHH------HccchhhhhhhHHHH
Confidence 457899999999999999999999998 6788999864 1111 11111000 000000111122233
Q ss_pred HHHHHHHHHHhhcCCcEEEEcCc--hHHHHHHhcccccccc-ccCCeEEEEEeCCHHHH----HHHHHHhH
Q 020775 108 DMASFSIESTLNKGKVPIIVGGS--NSYIEALVDDEDYGFR-WKYDCCFLWVDVSMPVL----RSFVSERV 171 (321)
Q Consensus 108 ~~a~~~i~~i~~~g~~pIivGGt--~~Y~~all~g~~~~~r-~~~~~~~i~L~~~~~~L----~~RL~~R~ 171 (321)
......++++.+.|...|+.|+. ..+...+.. .++ ..++..++++.+|.+++ .+|+..|+
T Consensus 97 ~~~~~~v~~~l~~g~~vIld~~~~~~~~~~~~~~----~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~ 163 (287)
T 1gvn_B 97 RMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTAT----MLQAKGYETKMYVMAVPKINSYLGTIERYETMY 163 (287)
T ss_dssp HHHHHHHHHHHHHTCCEEECCCCCCSHHHHHHHH----HHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHH----HHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHH
Confidence 33455667777778766665332 112222211 011 23556678899999998 66666554
No 35
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.84 E-value=5.8e-09 Score=102.14 Aligned_cols=102 Identities=16% Similarity=0.158 Sum_probs=69.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHH
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCD 108 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~ 108 (321)
...+.+|+|+|++||||||+|..|++.++..+|+.|.+. .|..
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-------------------------------------~~~~ 297 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLG-------------------------------------SWQR 297 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSC-------------------------------------SHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHH-------------------------------------HHHH
Confidence 446789999999999999999999999999999999851 1222
Q ss_pred HHHHHHHHHhhcCCcEEEEcCchH---HHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhHH
Q 020775 109 MASFSIESTLNKGKVPIIVGGSNS---YIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERVD 172 (321)
Q Consensus 109 ~a~~~i~~i~~~g~~pIivGGt~~---Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~~ 172 (321)
+...+......|...| +.+++. +.+.+..- .-...+.+.+|||+++.+++.+|+..|..
T Consensus 298 -~~~~~~~~l~~g~~vI-iD~~~~~~~~r~~~~~~---~~~~~~~~~~v~l~~~~e~l~~R~~~R~~ 359 (416)
T 3zvl_A 298 -CVSSCQAALRQGKRVV-IDNTNPDVPSRARYIQC---AKDAGVPCRCFNFCATIEQARHNNRFREM 359 (416)
T ss_dssp -HHHHHHHHHHTTCCEE-EESCCCSHHHHHHHHHH---HHHHTCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCcEE-EeCCCCCHHHHHHHHHH---HHHcCCeEEEEEEeCCHHHHHHHHHhhcc
Confidence 2223344445666544 444432 21121110 00123567899999999999999999974
No 36
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.83 E-value=2e-09 Score=90.69 Aligned_cols=111 Identities=14% Similarity=0.155 Sum_probs=65.1
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHHHHH
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMASFS 113 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a~~~ 113 (321)
.|+|+|++||||||+|..|+++++..++++|.+ .+. ..|.... .+. ..+....|.......
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~--~~~------------~~g~~~~--~~~---~~~~~~~~~~~~~~~ 62 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEE--VQK------------REGLSIP--QIF---EKKGEAYFRKLEFEV 62 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHH--HHH------------HHTSCHH--HHH---HHSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECcHH--HHH------------HcCCCHH--HHH---HHhChHHHHHHHHHH
Confidence 689999999999999999999999999999975 111 1111100 000 112223343333444
Q ss_pred HHHHhhcCCcEEEEcCchHH-HHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHh
Q 020775 114 IESTLNKGKVPIIVGGSNSY-IEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSER 170 (321)
Q Consensus 114 i~~i~~~g~~pIivGGt~~Y-~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R 170 (321)
+..+.+.+ ..||+.|.+.. ...... .++ . ...+|||++|.+++.+|+.+|
T Consensus 63 l~~l~~~~-~~Vi~~g~~~~~~~~~~~----~l~-~-~~~~i~l~~~~e~~~~R~~~r 113 (168)
T 2pt5_A 63 LKDLSEKE-NVVISTGGGLGANEEALN----FMK-S-RGTTVFIDIPFEVFLERCKDS 113 (168)
T ss_dssp HHHHTTSS-SEEEECCHHHHTCHHHHH----HHH-T-TSEEEEEECCHHHHHHHCBCT
T ss_pred HHHHhccC-CeEEECCCCEeCCHHHHH----HHH-c-CCEEEEEECCHHHHHHHHhCC
Confidence 55554333 45555332211 111111 111 1 237899999999999999876
No 37
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.83 E-value=1.5e-09 Score=91.81 Aligned_cols=116 Identities=16% Similarity=0.213 Sum_probs=64.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDMA 110 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~a 110 (321)
++.+|+|+||+||||||++..||+.++..++++|.+ .+ +..|.+...+ .+.+....|....
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~--~~------------~~~~~~i~~i-----~~~~g~~~~~~~~ 63 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQE--IE------------KRTGADVGWV-----FDLEGEEGFRDRE 63 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHH--HH------------HHHTSCHHHH-----HHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHH--HH------------HHhCcCHHHH-----HHHHhHHHHHHHH
Confidence 457899999999999999999999999999998874 11 1111110000 0111223344433
Q ss_pred HHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 111 SFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 111 ~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
...+..+.......+..||... +......+-... ..+++++++.+++.+|+.+|.
T Consensus 64 ~~~l~~l~~~~~~v~~~~~~~~-----~~~~~~~~l~~~-~~~i~l~~~~~~l~~R~~~r~ 118 (173)
T 1kag_A 64 EKVINELTEKQGIVLATGGGSV-----KSRETRNRLSAR-GVVVYLETTIEKQLARTQRDK 118 (173)
T ss_dssp HHHHHHHHTSSSEEEECCTTGG-----GSHHHHHHHHHH-SEEEECCCCHHHHHSCC----
T ss_pred HHHHHHHHhCCCeEEECCCeEE-----ecHHHHHHHHhC-CEEEEEeCCHHHHHHHHhCCC
Confidence 4556666555444343443211 111000000111 257889999999999998874
No 38
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.81 E-value=1.6e-08 Score=84.81 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=31.9
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.+|+|+||+||||||++..|+++++..+++.|.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~ 35 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSF 35 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCccc
Confidence 4899999999999999999999999999999975
No 39
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.80 E-value=3.9e-08 Score=89.53 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=35.5
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.+.+++.+|+|+||+||||||++..||+++|...+++|.+
T Consensus 22 ~m~~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i 61 (252)
T 4e22_A 22 HMTAIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAI 61 (252)
T ss_dssp -CTTTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCce
Confidence 4445678999999999999999999999999999998886
No 40
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.80 E-value=7.6e-09 Score=89.57 Aligned_cols=124 Identities=17% Similarity=0.256 Sum_probs=64.6
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCc-----------c
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNA-----------D 100 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~-----------~ 100 (321)
+++++|+||+|||||||+..|+..++.. ....+..+|.+|+..|..|+.+++.+...... .
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~--------~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~~ 72 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS--------FGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQ 72 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG--------EECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc--------ceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcceeeEEE
Confidence 4689999999999999999999887521 23455678888888888888887654211000 0
Q ss_pred ccHhhHHHHHHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCC-HHHHHHHHHHhH
Q 020775 101 FTAQNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVS-MPVLRSFVSERV 171 (321)
Q Consensus 101 ~~~~~f~~~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~-~~~L~~RL~~R~ 171 (321)
+.. .+.....+.++++.+.|+.+|+.. ...=.+.+.. ....+..+|++.+| .++|.+||.+|.
T Consensus 73 ~~~-~~yg~~~~~i~~~l~~g~~~il~~-~~~g~~~l~~------~~~~~~~~i~i~~p~~~~l~~Rl~~Rg 136 (186)
T 3a00_A 73 FSG-NYYGSTVASVKQVSKSGKTCILDI-DMQGVKSVKA------IPELNARFLFIAPPSVEDLKKRLEGRG 136 (186)
T ss_dssp ETT-EEEEEEHHHHHHHHHTTCEEEEEC-CHHHHHHHHT------CGGGCCEEEEEECSCC-----------
T ss_pred Eec-eeccCcHHHHHHHHHcCCeEEEEE-cHHHHHHHHH------hcCCCeEEEEEECcCHHHHHHHHHhcC
Confidence 000 000011234666777888666632 1000111111 01234566777775 599999999885
No 41
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.80 E-value=9.5e-09 Score=88.56 Aligned_cols=37 Identities=16% Similarity=0.473 Sum_probs=34.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
+++.+|+|+|++||||||+|..|+++++..+++.|.+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~ 46 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGEL 46 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHH
Confidence 3567999999999999999999999999999999975
No 42
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.80 E-value=2e-08 Score=83.78 Aligned_cols=33 Identities=27% Similarity=0.482 Sum_probs=30.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
++|+|+||+||||||+|..| +++|..+++.|..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~ 34 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDV 34 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHH
Confidence 58999999999999999999 9999999998764
No 43
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.80 E-value=2.2e-08 Score=92.46 Aligned_cols=117 Identities=19% Similarity=0.138 Sum_probs=69.5
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhC-CCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCcccc---HhhHH
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRF-PAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFT---AQNFC 107 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l-~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~---~~~f~ 107 (321)
+.+|+|+|++||||||+|..|++++ +..+|+.|.+ .+.+.-.+ .|.. ..|+ ...+.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~--r~~~~~~~--------~g~~----------~~~~~~~~~~~~ 61 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDY--RQSIMAHE--------ERDE----------YKYTKKKEGIVT 61 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHH--HHHHTTSC--------CCC-------------CCHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHH--HHHhccCC--------cccc----------cccchhhhhHHH
Confidence 4689999999999999999999985 8889999953 22111000 0100 0111 11122
Q ss_pred HHHHHHHHHHh---hcCCcEEEEcCchH---HHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhHH
Q 020775 108 DMASFSIESTL---NKGKVPIIVGGSNS---YIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERVD 172 (321)
Q Consensus 108 ~~a~~~i~~i~---~~g~~pIivGGt~~---Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~~ 172 (321)
+...+.+.... +.|. .+|+.|+++ +.+.+..-. -...++..+|+|+++.+++.+|+.+|..
T Consensus 62 ~~~~~~~~~~l~~~~~g~-~vi~d~~~~~~~~~~~l~~~~---~~~~~~~~~i~l~~~~e~~~~R~~~R~~ 128 (301)
T 1ltq_A 62 GMQFDTAKSILYGGDSVK-GVIISDTNLNPERRLAWETFA---KEYGWKVEHKVFDVPWTELVKRNSKRGT 128 (301)
T ss_dssp HHHHHHHHHHTTSCTTCC-EEEECSCCCCHHHHHHHHHHH---HHTTCEEEEEECCCCHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHHhhccCCC-EEEEeCCCCCHHHHHHHHHHH---HHcCCcEEEEEEECCHHHHHHHHHhccC
Confidence 33334455555 4554 566666542 222222100 0012456799999999999999999974
No 44
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.80 E-value=2.1e-08 Score=86.55 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=33.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhh-CCCEEEecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATR-FPAEIINSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~-l~~eiIsaDs~ 66 (321)
+++++|+|+|++||||||++..||++ ++..+|++|.+
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~ 45 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKL 45 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHH
Confidence 35678999999999999999999999 79999999975
No 45
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.78 E-value=6.1e-09 Score=94.54 Aligned_cols=52 Identities=17% Similarity=0.268 Sum_probs=35.3
Q ss_pred cccccccccc-cCCCcEEEEEcCCcccHHHHHHHHHhhCCCE----------EEecCcceeecCc
Q 020775 19 RPRMDLLVSR-RQKEKVLILMGATGTGKSRLSIDMATRFPAE----------IINSDKIQVYEGL 72 (321)
Q Consensus 19 ~~~~~~~~~~-~~~~~lIvI~GpTGSGKStLa~~LA~~l~~e----------iIsaDs~QvYkgl 72 (321)
.|++-.+.++ ..++.+|+|+|++||||||+|..|++.++.. +|++|.+ |+.+
T Consensus 8 ~~~~~~~~~~~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~--~~~~ 70 (252)
T 1uj2_A 8 EQTLQNHQQPNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF--YRVL 70 (252)
T ss_dssp -------------CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG--BCCC
T ss_pred HHHHHHhhhccCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcc--cccc
Confidence 3444444422 3456789999999999999999999999977 8999985 6643
No 46
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.78 E-value=1.6e-08 Score=86.39 Aligned_cols=36 Identities=17% Similarity=0.430 Sum_probs=33.2
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
++.+|+|+|++||||||+|..|+++++..+|+.|.+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~ 37 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGEL 37 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHH
Confidence 467899999999999999999999999999999975
No 47
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.76 E-value=1.2e-08 Score=91.15 Aligned_cols=121 Identities=17% Similarity=0.242 Sum_probs=64.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHH-hhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHh---
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMA-TRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQ--- 104 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA-~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~--- 104 (321)
..++.+++|+||+|||||||+..|+ ..++. ++.+.+++|.+|+..+..|+.+++.+...+.......
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~---------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQKNN---------IVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEII 94 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC----C---------EEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCCCC---------cccccccCCCCCCccccCCCeEEEecHHHhhhhhhcCcee
Confidence 4567899999999999999999999 76542 4667889999998888888888765422110000000
Q ss_pred -------hHHHHHHHHHHHHhhcCCcEEEEc---CchHHHHHHhccccccccccC--CeEEEE-EeCCHHHHHHHHHHh
Q 020775 105 -------NFCDMASFSIESTLNKGKVPIIVG---GSNSYIEALVDDEDYGFRWKY--DCCFLW-VDVSMPVLRSFVSER 170 (321)
Q Consensus 105 -------~f~~~a~~~i~~i~~~g~~pIivG---Gt~~Y~~all~g~~~~~r~~~--~~~~i~-L~~~~~~L~~RL~~R 170 (321)
.+.......++++.+.++.+|+.. |...| +..+ .+..++ ..++.++|.+||.+|
T Consensus 95 ~~~~~~~~~~~~~~~~i~~~~~~~~~vild~~~~g~~~~------------~~~~~~~~~~v~v~~~~~~~l~~Rl~~R 161 (231)
T 3lnc_A 95 EHAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKF------------MEMMREHVVSIFIMPPSMEELRRRLCGR 161 (231)
T ss_dssp EEEEETTEEEEEECTTHHHHHHHTCEEEEECCHHHHHHH------------HHHSGGGEEEEEEECSCHHHHHHC----
T ss_pred hhhhhccccCCCCHHHHHHHHHcCCeEEEEcCHHHHHHH------------HHhcCCCeEEEEEECCcHHHHHHHHHHc
Confidence 000000122445556677665532 22111 1222 244455 466899999999888
No 48
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.74 E-value=3.9e-08 Score=84.59 Aligned_cols=112 Identities=17% Similarity=0.188 Sum_probs=63.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC-----CEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccH
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP-----AEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTA 103 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~-----~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~ 103 (321)
..++.+|+|+|++||||||++..|++.++ ..+++.|.+ ..++. + ...|+.
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~--~~~~~-------------------~----~~~~~~ 64 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA--RTTVS-------------------E----GAGFTR 64 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH--HTTTT-------------------T----TCCCCH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH--HHHHh-------------------h----ccCCCh
Confidence 45678999999999999999999999874 245666653 11110 0 011221
Q ss_pred hh---HHHHHHHHHHHHhhcCCcEEEEcCchHHH---HHHhccccccccccCCeEEEEEeCCHHHHHHHHHH
Q 020775 104 QN---FCDMASFSIESTLNKGKVPIIVGGSNSYI---EALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSE 169 (321)
Q Consensus 104 ~~---f~~~a~~~i~~i~~~g~~pIivGGt~~Y~---~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~ 169 (321)
.+ +........+.+...| ..|+++++..|- +.+..-. . ....+.++|||+++.+++.+|+.+
T Consensus 65 ~~r~~~~~~~~~~~~~~~~~g-~~vi~d~~~~~~~~r~~~~~~~-~--~~~~~~~~v~L~~~~e~~~~R~~~ 132 (186)
T 2yvu_A 65 EERLRHLKRIAWIARLLARNG-VIVICSFVSPYKQARNMVRRIV-E--EEGIPFLEIYVKASLEEVIRRDPK 132 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHTTT-CEEEEECCCCCHHHHHHHHHHH-H--HTTCCEEEEEEECCHHHHHHHCHH
T ss_pred hhHHHHHHHHHHHHHHHHhCC-CEEEEeCccccHHHHHHHHHHh-h--ccCCCeEEEEEeCCHHHHHHhhhh
Confidence 11 1111112222333444 466667764331 1111100 0 012357899999999999999854
No 49
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.74 E-value=1.4e-08 Score=86.93 Aligned_cols=36 Identities=19% Similarity=0.408 Sum_probs=33.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
++.+|+|+|++||||||++..||++++..++++|.+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~ 38 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDI 38 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHH
Confidence 567899999999999999999999999999999864
No 50
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.73 E-value=1.8e-08 Score=90.78 Aligned_cols=40 Identities=23% Similarity=0.480 Sum_probs=36.5
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
+..+++++|+|+||+||||+|+|..||++|+...||+..+
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdl 63 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDL 63 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHH
Confidence 4467899999999999999999999999999999998765
No 51
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.72 E-value=2.5e-08 Score=85.02 Aligned_cols=36 Identities=19% Similarity=0.441 Sum_probs=33.2
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
++++|+|+|++||||||+|..|++.++..+|++|.+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~ 40 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDL 40 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHH
Confidence 457999999999999999999999999999999874
No 52
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.72 E-value=9e-08 Score=83.67 Aligned_cols=40 Identities=23% Similarity=0.449 Sum_probs=36.1
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhhC-CCEEEecCcc
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATRF-PAEIINSDKI 66 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~l-~~eiIsaDs~ 66 (321)
+..+++.+|+|+|++||||||++..|++.+ +..+|+.|.+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~ 56 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDF 56 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGG
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCcc
Confidence 445677899999999999999999999999 7899999986
No 53
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.71 E-value=2.5e-08 Score=88.77 Aligned_cols=37 Identities=27% Similarity=0.483 Sum_probs=33.0
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.++.+|+|+|++||||||++..||+.++..+|+.|.+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~ 41 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDL 41 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHH
Confidence 3567899999999999999999999999999999875
No 54
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.70 E-value=5.5e-08 Score=82.93 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=31.4
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCC-----CEEEecCcc
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFP-----AEIINSDKI 66 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~-----~eiIsaDs~ 66 (321)
+.+|+|+||+||||||++..|+++++ ..+++.|.+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~ 42 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSV 42 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHH
Confidence 57899999999999999999999998 788887753
No 55
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.68 E-value=6e-09 Score=88.99 Aligned_cols=33 Identities=30% Similarity=0.427 Sum_probs=28.7
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCC-----CEEEecCc
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFP-----AEIINSDK 65 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~-----~eiIsaDs 65 (321)
++|+|+|++||||||++..|+++++ ..+++.|.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 5799999999999999999999987 66776554
No 56
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.68 E-value=3.9e-08 Score=86.92 Aligned_cols=37 Identities=22% Similarity=0.484 Sum_probs=33.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.++.+|+|+|++||||||+|..||++++..+|++|.+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~ 38 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDM 38 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHH
Confidence 3567899999999999999999999999999999875
No 57
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.68 E-value=1.2e-07 Score=82.66 Aligned_cols=109 Identities=21% Similarity=0.209 Sum_probs=62.8
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC---CCE--EEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccH
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF---PAE--IINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTA 103 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l---~~e--iIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~ 103 (321)
..++.+|+|+||+||||||++..||+.+ |.. +++.|.+ .+++. .+ ..++.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~--~~~~~-----------~~------------~~~~~ 76 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV--RHGLN-----------RD------------LSFKA 76 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH--TTTTT-----------TT------------CCSSH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh--hhHhh-----------cc------------cCcCh
Confidence 4578899999999999999999999988 333 5666553 12110 00 01222
Q ss_pred hh---HHHHHHHHHHHHhhcCCcEEEEcCch--HHHHHHhccccccccccCCeEEEEEeCCHHHHHHHH
Q 020775 104 QN---FCDMASFSIESTLNKGKVPIIVGGSN--SYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFV 167 (321)
Q Consensus 104 ~~---f~~~a~~~i~~i~~~g~~pIivGGt~--~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL 167 (321)
.+ +..........+...+...|+.++.. .+-+.+.. ......+.++||+++.+++.+|+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~r~~~~~-----~~~~~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 77 EDRAENIRRVGEVAKLFADAGIICIASLISPYRTDRDACRS-----LLPEGDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEEECCCCCHHHHHHHHH-----TSCTTSEEEEEECCCHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEEEecCCchHHHHHHHHH-----hcCCCCEEEEEEeCCHHHHHHhc
Confidence 22 22222233444455555444433322 22222221 11233567899999999999997
No 58
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.67 E-value=1.3e-07 Score=83.69 Aligned_cols=125 Identities=12% Similarity=0.080 Sum_probs=66.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhc--CCCcc-cc-cccC-CCccccH-h
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQC--GIPHH-LL-GIQH-PNADFTA-Q 104 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~--gvphh-ll-~~~~-~~~~~~~-~ 104 (321)
+..+|+|.|++||||||++..||+++|..+++ +.+ |+.+.--++ .++++.+ +-.+. +. .+.. +...++. .
T Consensus 5 ~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~--~~~~a~~~g-~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 80 (201)
T 3fdi_A 5 KQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KEL--LDEVAKDGR-YSKEVLERFDEKPMNFAFIPVPAGGTTISLEQ 80 (201)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHH--HHHTTCC----------------------------------C
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHH--HHHHHHhcC-CCHHHHHHHhhhchhHHHHHhccccccccccH
Confidence 45799999999999999999999999999997 333 332110000 1111110 00000 00 0000 0000001 1
Q ss_pred hHHHHHHHHHHHHh--hcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHh
Q 020775 105 NFCDMASFSIESTL--NKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSER 170 (321)
Q Consensus 105 ~f~~~a~~~i~~i~--~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R 170 (321)
..+....+.++++. +.+ ..|++|..+-| ++.+ .-+.+.|||++|.+++.+|+.+|
T Consensus 81 ~~~~~~~~~i~~la~~~~~-~~Vi~Gr~g~~---vl~~-------~~~~~~V~L~A~~e~r~~R~~~~ 137 (201)
T 3fdi_A 81 DIAIRQFNFIRKKANEEKE-SFVIVGRCAEE---ILSD-------NPNMISAFILGDKDTKTKRVMER 137 (201)
T ss_dssp HHHHHHHHHHHHHHHTSCC-CEEEESTTHHH---HTTT-------CTTEEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCC-CEEEEECCcch---hcCC-------CCCeEEEEEECCHHHHHHHHHHH
Confidence 11233445677776 444 46666643333 2332 12468999999999999999766
No 59
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.66 E-value=2.8e-08 Score=86.50 Aligned_cols=37 Identities=19% Similarity=0.454 Sum_probs=33.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.++.+|+|+|++||||||+|..|++.++..+|+.|.+
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~ 54 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGEL 54 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHH
Confidence 3566899999999999999999999999999999874
No 60
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.66 E-value=5.1e-08 Score=84.20 Aligned_cols=36 Identities=17% Similarity=0.350 Sum_probs=33.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
+++.+|+|+|++||||||++..||+. |..+|++|.+
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~ 41 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDAL 41 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHH
Confidence 45679999999999999999999998 9999999985
No 61
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.65 E-value=2.4e-08 Score=88.38 Aligned_cols=36 Identities=17% Similarity=0.307 Sum_probs=33.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
++.+|+|+||+||||||++..||++++..++++|.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~ 39 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDL 39 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHH
Confidence 457899999999999999999999999999998875
No 62
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.65 E-value=7.3e-08 Score=85.34 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=33.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
++..|+|+|++||||||+|..||++++..+|+.|.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~l 39 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDM 39 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHH
Confidence 346899999999999999999999999999999875
No 63
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.62 E-value=5.5e-08 Score=85.73 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=33.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
++.+|+|+||+||||||++..|++.++..++++|.+
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i 39 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 39 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcce
Confidence 456899999999999999999999999999999986
No 64
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.62 E-value=4.7e-08 Score=87.80 Aligned_cols=129 Identities=14% Similarity=0.082 Sum_probs=75.7
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCC---------c
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPN---------A 99 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~---------~ 99 (321)
++++.+++|+||+|||||||...|+..+.. |. +.-.+.++|..+...|+.|+.|++.+...+. +
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p-----~~--~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPL-----YD--TQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCT-----TT--EEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCC-----Cc--eEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHH
Confidence 567899999999999999999999998652 11 1225567777777777888888765421100 1
Q ss_pred cccH-hhHHHHHHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 100 DFTA-QNFCDMASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 100 ~~~~-~~f~~~a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
.... +.+.....+.++++.+.|++.|+- ...-..+.+..- +. -...+|....+.+++.+||..|.
T Consensus 86 ~~~~~~~~yg~~~~~v~~~l~~G~illLD-LD~~~~~~i~~~----l~--~~~tI~i~th~~~~l~~Rl~~rG 151 (219)
T 1s96_A 86 HAEVFGNYYGTSREAIEQVLATGVDVFLD-IDWQGAQQIRQK----MP--HARSIFILPPSKIELDRRLRGRG 151 (219)
T ss_dssp EEEETTEEEEEEHHHHHHHHTTTCEEEEE-CCHHHHHHHHHH----CT--TCEEEEEECSSHHHHHHHHHTTS
T ss_pred HHHHHhccCCCCHHHHHHHHhcCCeEEEE-ECHHHHHHHHHH----cc--CCEEEEEECCCHHHHHHHHHHcC
Confidence 0000 001000123456667778776665 222222222221 11 13456667778999999986664
No 65
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.62 E-value=2.5e-08 Score=92.53 Aligned_cols=36 Identities=36% Similarity=0.480 Sum_probs=32.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
+++.+|+|+|++||||||+|..|+ .+|..+|++|.+
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~ 108 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHL 108 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHH
Confidence 346789999999999999999999 589999999986
No 66
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.61 E-value=7.6e-08 Score=86.86 Aligned_cols=142 Identities=14% Similarity=0.147 Sum_probs=73.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCccee---ecCccccCCCCCHHhhcCCCcccc-cccC-------CC-
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQV---YEGLDIVTNKITEEEQCGIPHHLL-GIQH-------PN- 98 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~Qv---Ykgl~I~T~k~~~~E~~gvphhll-~~~~-------~~- 98 (321)
++.+|+|.|+.||||||+|..||+++|..+++.|-+.- -.|++.---. ..+|. .+..++ .+.. ..
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~~a~~~g~~~~~~~-~~~E~--~~~~~~~~~~~~~~~~~~~~~ 89 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGEQFFR-LADEK--AGNNLLYRLGGGRKIDLHSKP 89 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHCC-------------------------------------
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHHHHHHcCCCHHHHH-HHHhh--ccccHHHHHhccccccccccc
Confidence 45799999999999999999999999999999876421 1123211000 00110 010010 1100 00
Q ss_pred ---ccccHh-hHHHHHHHHHHHHhhcCCcEEEEcCchHHHHHHh---ccccccccccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 99 ---ADFTAQ-NFCDMASFSIESTLNKGKVPIIVGGSNSYIEALV---DDEDYGFRWKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 99 ---~~~~~~-~f~~~a~~~i~~i~~~g~~pIivGGt~~Y~~all---~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
..+... .......+.+.++.+++. .|++|-.+-| ++ .+ .-+.+.|||++|.+++.+|+.+|-
T Consensus 90 ~~~~~~~~~~~~f~~~~~~i~~la~~~~-~Vi~Grggg~---vl~~~~~-------~~~~~~VfL~A~~e~r~~Ri~~~~ 158 (223)
T 3hdt_A 90 SPNDKLTSPENLFKFQSEVMRELAESEP-CIFVGRAAGY---VLDQDED-------IERLIRIFVYTDKVKKVQRVMEVD 158 (223)
T ss_dssp --------HHHHHHHHHHHHHHHHHHSC-EEEESTTHHH---HHHHCTT-------CCEEEEEEEECCHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHHHhCCC-EEEEeCCcch---hcccccC-------CCCeEEEEEECCHHHHHHHHHHhc
Confidence 011111 112333456777766654 5555332222 23 22 124689999999999999998763
Q ss_pred HHHHhccHHHHHHHhh
Q 020775 172 DRMVQNGMIDEVRKFF 187 (321)
Q Consensus 172 ~~Ml~~Gll~Ev~~l~ 187 (321)
..-. ....++++++.
T Consensus 159 ~~~~-~~a~~~I~~~d 173 (223)
T 3hdt_A 159 CIDE-ERAKRRIKKIE 173 (223)
T ss_dssp TCCH-HHHHHHHHHHH
T ss_pred CCCH-HHHHHHHHHHH
Confidence 2211 22444444443
No 67
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.58 E-value=1.9e-07 Score=82.22 Aligned_cols=36 Identities=28% Similarity=0.479 Sum_probs=32.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.++.+|+|+|++||||||++..|++ +|..+|++|.+
T Consensus 2 ~~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~ 37 (218)
T 1vht_A 2 SLRYIVALTGGIGSGKSTVANAFAD-LGINVIDADII 37 (218)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHH
Confidence 3567999999999999999999998 99999999975
No 68
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.58 E-value=6.2e-08 Score=82.79 Aligned_cols=117 Identities=16% Similarity=0.225 Sum_probs=63.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC---CCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhH
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF---PAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNF 106 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l---~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f 106 (321)
.++.+|+|+|++||||||++..|++.+ |..++..|.-.+.+++. .. .++ ........|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~---------------~~-~~~---~~~~~~~~~ 63 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLN---------------KN-LGF---SPEDREENV 63 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTT---------------TT-CCS---SHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHh---------------hc-ccc---ccccHHHHH
Confidence 357899999999999999999999987 76777555432222110 00 000 001111233
Q ss_pred HHHHHHHHHHHh-hcCCcEEEEcCchHHHHH--HhccccccccccCCeEEEEEeCCHHHHHHHHHHh
Q 020775 107 CDMASFSIESTL-NKGKVPIIVGGSNSYIEA--LVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVSER 170 (321)
Q Consensus 107 ~~~a~~~i~~i~-~~g~~pIivGGt~~Y~~a--ll~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~~R 170 (321)
.+... ...+. +.+ ..+++|+.+-|... .+..... .......++||++|.+++.+|+.+|
T Consensus 64 ~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~l~~~~e~~~~R~~~~ 125 (179)
T 2pez_A 64 RRIAE--VAKLFADAG-LVCITSFISPYTQDRNNARQIHE--GASLPFFEVFVDAPLHVCEQRDVKG 125 (179)
T ss_dssp HHHHH--HHHHHHHTT-CEEEEECCCCCHHHHHHHHHHHH--HTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred HHHHH--HHHHHHHCC-CEEEEecCCcchHHHHHHHHHhh--ccCCCeEEEEEeCCHHHHHHHHhhh
Confidence 33222 12223 444 45566666433211 1110000 0124557899999999999998654
No 69
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.57 E-value=6.3e-08 Score=87.69 Aligned_cols=38 Identities=18% Similarity=0.371 Sum_probs=34.7
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
+.++.+|+|+||+||||||+|..|+++++..+|++|.+
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~ 63 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDL 63 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHH
Confidence 34678999999999999999999999999999999875
No 70
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.55 E-value=6.1e-08 Score=82.87 Aligned_cols=32 Identities=13% Similarity=0.179 Sum_probs=29.4
Q ss_pred EEEEEcCCcccHHHHHHHHHhhC---CCEEEecCc
Q 020775 34 VLILMGATGTGKSRLSIDMATRF---PAEIINSDK 65 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l---~~eiIsaDs 65 (321)
+|+|+|++||||||++..|++++ |..++++|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 78999999999999999999988 888998874
No 71
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.54 E-value=2.6e-07 Score=82.30 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=31.1
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
+|+|.||+||||||++..|+++++..+|++|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~ 34 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGI 34 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEchHHH
Confidence 689999999999999999999999999999875
No 72
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.51 E-value=1.4e-07 Score=82.90 Aligned_cols=33 Identities=24% Similarity=0.470 Sum_probs=31.0
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.|+|+||+||||||+|..|+++++..+|++|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~ 34 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHH
Confidence 488999999999999999999999999999875
No 73
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.51 E-value=1.2e-07 Score=83.17 Aligned_cols=33 Identities=21% Similarity=0.479 Sum_probs=30.9
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.|+|+||+||||||+|..|+++++..+|++|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~ 34 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHH
Confidence 588999999999999999999999999999875
No 74
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=98.47 E-value=5.5e-08 Score=83.56 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=26.9
Q ss_pred EEEEEcCCcccHHHHHHHHHhhC---CCEEEecC
Q 020775 34 VLILMGATGTGKSRLSIDMATRF---PAEIINSD 64 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l---~~eiIsaD 64 (321)
+|+|.|++||||||++..|++.+ |..++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 79999999999999999999998 87777543
No 75
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.47 E-value=6.2e-07 Score=78.83 Aligned_cols=115 Identities=16% Similarity=0.110 Sum_probs=64.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC------CEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCcccc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP------AEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFT 102 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~------~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~ 102 (321)
..++.+|+|+|++||||||++..|++.++ ..+++.|.+ ..+++. .+ .... -+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~--r~~l~~---------------~~----~~~~-~~ 79 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI--RFGLNK---------------DL----GFSE-AD 79 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH--TTTTTT---------------TC----CSSH-HH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH--hhhhcc---------------cc----CCCH-HH
Confidence 35678999999999999999999999876 556665543 222211 00 0000 01
Q ss_pred HhhHHHHHHHHHHHHhhcCCcEEEEcCchH---HHHHHhccccccc----cccCCeEEEEEeCCHHHHHHHH
Q 020775 103 AQNFCDMASFSIESTLNKGKVPIIVGGSNS---YIEALVDDEDYGF----RWKYDCCFLWVDVSMPVLRSFV 167 (321)
Q Consensus 103 ~~~f~~~a~~~i~~i~~~g~~pIivGGt~~---Y~~all~g~~~~~----r~~~~~~~i~L~~~~~~L~~RL 167 (321)
...+.+.....+......|...|+. ++.. +.+.+.. ..... ....+..+|||+++.+++.+|+
T Consensus 80 r~~~~~~~~~~~~~~l~~g~~VI~d-~~~~~~~~~~~l~~-l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~ 149 (211)
T 1m7g_A 80 RNENIRRIAEVAKLFADSNSIAITS-FISPYRKDRDTARQ-LHEVATPGEETGLPFVEVYVDVPVEVAEQRD 149 (211)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEE-CCCCCHHHHHHHHH-HHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEe-cCCccHHHHHHHHH-HhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence 1122233333344555677655544 3322 2222111 00000 1124578999999999999996
No 76
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.45 E-value=1.7e-07 Score=87.51 Aligned_cols=39 Identities=23% Similarity=0.404 Sum_probs=31.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCC-----CEEEecCcceeec
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFP-----AEIINSDKIQVYE 70 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~-----~eiIsaDs~QvYk 70 (321)
.++.+|+|+||+||||||+|..|++.++ ..+|++|++ |+
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~--~r 46 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF--HR 46 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG--BS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh--hc
Confidence 4567999999999999999999999887 789999996 55
No 77
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.44 E-value=8.2e-07 Score=79.35 Aligned_cols=36 Identities=22% Similarity=0.376 Sum_probs=33.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
++..|+|+|++||||||+|..||++++..+|++|.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~l 50 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDM 50 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHH
Confidence 456899999999999999999999999999999874
No 78
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.43 E-value=1.3e-07 Score=82.37 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=26.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCE
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAE 59 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~e 59 (321)
+++.+|+|+|++||||||++..|+++++..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 357899999999999999999999987543
No 79
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.40 E-value=1.2e-06 Score=88.26 Aligned_cols=38 Identities=18% Similarity=0.465 Sum_probs=31.9
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC-----CCEEEecCcc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF-----PAEIINSDKI 66 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l-----~~eiIsaDs~ 66 (321)
...+.+|+++|++||||||+|..||+.+ +..++|.|.+
T Consensus 32 ~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 32 TNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 4567899999999999999999999987 3467888874
No 80
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.39 E-value=9.3e-07 Score=77.74 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=30.8
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.|+|+||+||||||+|..|+++++..+|++|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~ 34 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDM 34 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHH
Confidence 489999999999999999999999999999875
No 81
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.39 E-value=2.2e-07 Score=81.50 Aligned_cols=56 Identities=18% Similarity=0.182 Sum_probs=39.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCccccc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLG 93 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~ 93 (321)
+++++++|+||+|||||||...|+..+... +...+..+|.+|+..+..|+++++++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~--------~~~~v~~ttr~~~~g~~~g~~~~~~~ 57 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSI--------FGFSVSHTTRNPRPGEEDGKDYYFVT 57 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTT--------EEECCCEECSCCCTTCCBTTTBEECC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchh--------ceeeeeeeccCCCCcccCCceEEEcc
Confidence 356789999999999999999999876411 12234456777777677788776654
No 82
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.38 E-value=2.2e-06 Score=75.16 Aligned_cols=36 Identities=19% Similarity=0.344 Sum_probs=33.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
++.+|+|+|++||||||++..|++.+|..++++|.+
T Consensus 2 ~~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~ 37 (219)
T 2h92_A 2 KAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAM 37 (219)
T ss_dssp -CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCceecCChH
Confidence 356899999999999999999999999999999985
No 83
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.37 E-value=1e-06 Score=75.63 Aligned_cols=35 Identities=31% Similarity=0.517 Sum_probs=30.6
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCC-EEEecCcc
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPA-EIINSDKI 66 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~-eiIsaDs~ 66 (321)
+.+++|+||+|||||||+..|++.+++ .+++.|.+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~ 37 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDII 37 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccch
Confidence 468999999999999999999998887 57887764
No 84
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.37 E-value=1.4e-06 Score=75.23 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.++.+|+|+||+||||||++..|+..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 457899999999999999999999987
No 85
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.37 E-value=1.5e-06 Score=79.05 Aligned_cols=41 Identities=27% Similarity=0.396 Sum_probs=35.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGL 72 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl 72 (321)
.++.+|+|.||+||||||++..||++++..+++.|.+ |+++
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~--~r~~ 47 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM--YRIA 47 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH--HHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH--HHHH
Confidence 4567999999999999999999999999999999985 6654
No 86
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.36 E-value=7.7e-07 Score=76.50 Aligned_cols=29 Identities=28% Similarity=0.596 Sum_probs=26.3
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEe
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIIN 62 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIs 62 (321)
+|+|.|++||||||++..||++++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 68999999999999999999999976653
No 87
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=98.35 E-value=1.7e-07 Score=87.97 Aligned_cols=122 Identities=18% Similarity=0.258 Sum_probs=78.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccc-cccCCCccccHhhHHH
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLL-GIQHPNADFTAQNFCD 108 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll-~~~~~~~~~~~~~f~~ 108 (321)
..+++|+|+|| ||+||...|.+.++.. +...++.+|++|++.|.+|+.||++ +...+......+.|.+
T Consensus 103 ~~~r~ivl~GP---gK~tl~~~L~~~~~~~--------~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE 171 (295)
T 1kjw_A 103 HYARPIIILGP---TKDRANDDLLSEFPDK--------FGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIE 171 (295)
T ss_dssp CSCCCEEEEST---THHHHHHHHHHHCTTT--------EECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEE
T ss_pred CCCCEEEEECC---CHHHHHHHHHhhCccc--------eeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEE
Confidence 45688999999 7999999999987521 3446788999999999999999998 5332222222222222
Q ss_pred H----------HHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEe-CCHHHHHHHHHHhH
Q 020775 109 M----------ASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVD-VSMPVLRSFVSERV 171 (321)
Q Consensus 109 ~----------a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~-~~~~~L~~RL~~R~ 171 (321)
. ..+.|+++.+.|+.+|+...- -.++.+-. ...++ ++|++. ++.++|.+ |..|.
T Consensus 172 ~~~~~g~~YGt~~~~V~~~~~~G~~vildid~-~g~~~l~~------~~~~p-i~IfI~pps~~~L~~-L~~R~ 236 (295)
T 1kjw_A 172 AGQYNSHLYGTSVQSVREVAEQGKHCILDVSA-NAVRRLQA------AHLHP-IAIFIRPRSLENVLE-INKRI 236 (295)
T ss_dssp EEEETTEEEEEEHHHHHHHHHTTCEEEECCCT-THHHHHHH------TTCCC-EEEEECCSSHHHHHH-HCTTS
T ss_pred EEEEcCcEeeeeHHHHHHHHhcCCeEEEEeCH-HHHHHHHh------cccCC-eEEEEECCCHHHHHH-HHhcC
Confidence 2 235577888899988876432 11111111 12234 555555 56888888 77775
No 88
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.34 E-value=2.3e-06 Score=73.88 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPA 58 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~ 58 (321)
++.+|+|.|++||||||++..|+++++.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4679999999999999999999999875
No 89
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.33 E-value=2e-07 Score=81.14 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=29.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSD 64 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaD 64 (321)
.++.+|+|+|++||||||++..|+++++...+++|
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~ 42 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK 42 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 35789999999999999999999999876555554
No 90
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.32 E-value=1.9e-06 Score=88.72 Aligned_cols=115 Identities=14% Similarity=0.103 Sum_probs=67.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC---CCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF---PAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFC 107 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l---~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~ 107 (321)
++.+|+|+|++||||||+|..|++++ +..++..|.-.+..++... ...........|+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~-------------------~~fs~~dree~~r 111 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKN-------------------LGFSPEDREENVR 111 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTT-------------------CCSSHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCcc-------------------ccCChhhhHHHHH
Confidence 67899999999999999999999998 7777766643222232210 0001111222343
Q ss_pred HHHHHHHHHHhhcCCcEEEEcCchHH---HHHHhcccccccc-ccCCeEEEEEeCCHHHHHHHHHHh
Q 020775 108 DMASFSIESTLNKGKVPIIVGGSNSY---IEALVDDEDYGFR-WKYDCCFLWVDVSMPVLRSFVSER 170 (321)
Q Consensus 108 ~~a~~~i~~i~~~g~~pIivGGt~~Y---~~all~g~~~~~r-~~~~~~~i~L~~~~~~L~~RL~~R 170 (321)
+. .+.++.+.+.|. .|+++++..| .+.+.. ..+ ...++++|||+++.+++.+|+.++
T Consensus 112 ~i-~eva~~~l~~G~-iVI~d~~s~~~~~r~~~r~----ll~~~g~p~~vV~Ldap~Evl~~Rl~r~ 172 (630)
T 1x6v_B 112 RI-AEVAKLFADAGL-VCITSFISPYTQDRNNARQ----IHEGASLPFFEVFVDAPLHVCEQRDVKG 172 (630)
T ss_dssp HH-HHHHHHHHHTTC-EEEEECCCCCHHHHHHHHH----HHHTTTCCEEEEEEECCHHHHHHHCTTS
T ss_pred HH-HHHHHHHHhCCC-EEEEeCchhhHHHHHHHHH----HHHhCCCCeEEEEEECCHHHHHHHhccc
Confidence 33 234444455564 4445544332 111111 001 124578999999999999998643
No 91
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.32 E-value=1.7e-06 Score=76.99 Aligned_cols=33 Identities=24% Similarity=0.422 Sum_probs=30.8
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
+|+|+||+||||+|+|..||++|+...||+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGdl 34 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDI 34 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHH
Confidence 689999999999999999999999999998765
No 92
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.28 E-value=3.5e-06 Score=74.85 Aligned_cols=56 Identities=25% Similarity=0.412 Sum_probs=41.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLL 92 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll 92 (321)
.+++.+++|+||+|||||||...|+..++| .+ +-|.++.|..+...++.++.+.+.
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~pG------~i--~~g~~~~~~~~~~~~~~~i~~~~~ 75 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEFPN------YF--YFSVSCTTRKKREKEKEGVDYYFI 75 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHSTT------TE--EECCCEECSCCCSSCCBTTTBEEC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhCCC------cE--EEeecccCCCCCcccccCCeEEEC
Confidence 456789999999999999999999998742 22 227778777766666777766544
No 93
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=98.25 E-value=4.7e-06 Score=74.92 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=26.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
+.++.+|+|.||+||||||++..|++.++
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 45778999999999999999999999986
No 94
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.21 E-value=9e-07 Score=80.44 Aligned_cols=34 Identities=29% Similarity=0.455 Sum_probs=31.2
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
..+.|+||+||||||+|..|+++++..+||+|.+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdl 42 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQISTGDM 42 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeeechHH
Confidence 3578999999999999999999999999999865
No 95
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=98.15 E-value=7.2e-07 Score=83.74 Aligned_cols=123 Identities=18% Similarity=0.198 Sum_probs=77.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccC-CCccccHhhHHH
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQH-PNADFTAQNFCD 108 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~-~~~~~~~~~f~~ 108 (321)
...+.|||+|| ||+||...|.+.++.. +...++.+|++|++.|..|+.||+++..+ .......+.|.+
T Consensus 98 ~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~--------f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE 166 (292)
T 3tvt_A 98 NYTRPVIILGP---LKDRINDDLISEYPDK--------FGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIE 166 (292)
T ss_dssp SSCCCEEEEST---THHHHHHHHHHHCTTT--------EECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEE
T ss_pred CCCCeEEEeCC---CHHHHHHHHHHhChhh--------ccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEE
Confidence 35677899999 5999999999988643 23467899999999999999999984221 111111111221
Q ss_pred H----------HHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEE-eCCHHHHHHHHHHhH
Q 020775 109 M----------ASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWV-DVSMPVLRSFVSERV 171 (321)
Q Consensus 109 ~----------a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L-~~~~~~L~~RL~~R~ 171 (321)
. ..+.++++.++|+.+|+.-... -++.|-. .....++|++ .++.++|.+|+..|.
T Consensus 167 ~a~~~gn~YGT~~~~V~~~~~~gk~viLdid~q-g~~~lk~-------~~~~pi~IFI~PpS~e~L~~r~~~r~ 232 (292)
T 3tvt_A 167 AGQYNDNLYGTSVASVREVAEKGKHCILDVSGN-AIKRLQV-------AQLYPVAVFIKPKSVDSVMEMNRRMT 232 (292)
T ss_dssp EEEETTEEEEEEHHHHHHHHHHTCEEEECCCTH-HHHHHHH-------TTCCCEEEEECCSCHHHHHHTCTTSC
T ss_pred EEEEccceeEEehHHHHHHHHcCCcEEEeccch-hhhhccc-------ccccceEEEEECCCHHHHHHHHhCCC
Confidence 1 1356778888999888752210 0011111 1223445555 557899999887775
No 96
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.13 E-value=4.7e-06 Score=78.05 Aligned_cols=37 Identities=19% Similarity=0.344 Sum_probs=32.0
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCC-------CEEEecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFP-------AEIINSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~-------~eiIsaDs~ 66 (321)
.++.+|+|+||+|||||||+..|+..++ ..+|++|..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 5678999999999999999999998765 567888875
No 97
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.06 E-value=2.5e-05 Score=74.16 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=31.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCC-------CEEEecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFP-------AEIINSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~-------~eiIsaDs~ 66 (321)
.++.+|+|+||+||||||++..|+..++ ..+|+.|..
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f 133 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF 133 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence 4566999999999999999999998764 457899986
No 98
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.06 E-value=3.1e-06 Score=74.22 Aligned_cols=61 Identities=20% Similarity=0.240 Sum_probs=37.5
Q ss_pred ccccc-cccCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCccc
Q 020775 22 MDLLV-SRRQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHL 91 (321)
Q Consensus 22 ~~~~~-~~~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhl 91 (321)
-|.++ |...++.+++|+||+|||||||...|+..+.. ++-..++.+.++...++.++.+.+
T Consensus 9 ~~~~~~~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---------i~~~~~~~~~~~~~~~~~~i~~~~ 70 (207)
T 1znw_A 9 KPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---------LHFSVSATTRAPRPGEVDGVDYHF 70 (207)
T ss_dssp ----------CCCEEEEECSTTSSHHHHHHHHHHHSTT---------CEECCCEESSCCCTTCCBTTTBEE
T ss_pred CcCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---------eEEcccccccCCcccccCCCeeEe
Confidence 34455 66778899999999999999999999998751 111235566555544556665543
No 99
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=98.02 E-value=7.7e-06 Score=85.37 Aligned_cols=121 Identities=18% Similarity=0.256 Sum_probs=81.2
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccc-cccCCCccccHhhHHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLL-GIQHPNADFTAQNFCDM 109 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll-~~~~~~~~~~~~~f~~~ 109 (321)
.+++|+|+|| ||+||...|.+.++.. +...++.+|++|++.|..|+.|||+ +...+......+.|.++
T Consensus 530 ~~r~vvl~GP---~K~tl~~~L~~~~~~~--------~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~ 598 (721)
T 2xkx_A 530 YARPIIILGP---TKDRANDDLLSEFPDK--------FGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEA 598 (721)
T ss_pred CCCEEEEECC---CHHHHHHHHHHhCccc--------eeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEE
Confidence 5688999999 3999999999887521 2335678999999999999999998 54433333333333333
Q ss_pred ----------HHHHHHHHhhcCCcEEEEcCchHHHHHHhccccccccccCCeEEEEEe-CCHHHHHHHHHHhH
Q 020775 110 ----------ASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFRWKYDCCFLWVD-VSMPVLRSFVSERV 171 (321)
Q Consensus 110 ----------a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r~~~~~~~i~L~-~~~~~L~~RL~~R~ 171 (321)
-.+.|+++.++|+.+|+.... -.++.+-. ...++ ++|++. ++.++|.+ |..|.
T Consensus 599 ~~~~g~~YGt~~~~v~~~~~~g~~~ildi~~-~~~~~l~~------~~~~p-~~ifi~pps~~~L~~-l~~R~ 662 (721)
T 2xkx_A 599 GQYNSHLYGTSVQSVREVAEQGKHCILDVSA-NAVRRLQA------AHLHP-IAIFIRPRSLENVLE-INKRI 662 (721)
T ss_pred EEECCccceeeHHHHHHHHHCCCcEEEeCCH-HHHHHHHh------cccCC-EEEEEeCCcHHHHHH-HhccC
Confidence 345688888999998887532 22222211 12344 455554 56888888 87775
No 100
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.00 E-value=2.2e-06 Score=75.33 Aligned_cols=35 Identities=31% Similarity=0.535 Sum_probs=33.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
..+|+|+|++||||||+|..|++.+|..+|++|.+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~ 46 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRI 46 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHH
Confidence 46899999999999999999999999999999996
No 101
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.98 E-value=9.5e-07 Score=76.85 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=23.2
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
++|+|.|++||||||++..|++.++
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999885
No 102
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.97 E-value=3.1e-06 Score=73.62 Aligned_cols=33 Identities=18% Similarity=0.425 Sum_probs=31.0
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.+|+|+||+||||||++..||+ +|..+|++|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~ 35 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVV 35 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHH
Confidence 5899999999999999999998 89999999985
No 103
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.97 E-value=2.7e-06 Score=73.53 Aligned_cols=34 Identities=18% Similarity=0.348 Sum_probs=32.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
++|+|+|++||||||++..||+.++..+++.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~ 36 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALGVPYLSSGLL 36 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceeccchH
Confidence 3899999999999999999999999999999985
No 104
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.95 E-value=3.5e-06 Score=73.00 Aligned_cols=33 Identities=30% Similarity=0.460 Sum_probs=31.0
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.+|+|+|++||||||++..||+ +|..++++|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~ 34 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKL 34 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHH
Confidence 4799999999999999999999 99999999985
No 105
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.94 E-value=1e-05 Score=72.41 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=30.9
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
..|.|+|..||||||++..|++ +|.++|++|.+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~i 42 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLI 42 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHH
Confidence 4799999999999999999998 99999999985
No 106
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.91 E-value=6.1e-06 Score=70.50 Aligned_cols=38 Identities=26% Similarity=0.388 Sum_probs=30.7
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCE--EEecCcc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAE--IINSDKI 66 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~e--iIsaDs~ 66 (321)
..++.+++|+||+|||||||+..|++.++.. .++.|.+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 3467899999999999999999999986533 5666654
No 107
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.89 E-value=5.6e-06 Score=75.24 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=25.1
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+|+|.|+.||||||++..|++.++
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44678999999999999999999999874
No 108
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.88 E-value=6.1e-06 Score=71.86 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=33.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCC--CEEEecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFP--AEIINSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~--~eiIsaDs~ 66 (321)
+++.+|+|+||+|||||||+..|+..++ ..+++.|.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~ 42 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHY 42 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcc
Confidence 4667999999999999999999999988 889999985
No 109
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.87 E-value=3.1e-06 Score=76.50 Aligned_cols=136 Identities=13% Similarity=0.039 Sum_probs=64.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCcc-ccCCCCCHHhh-cCCCcccccc-cCCCcc--ccH
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLD-IVTNKITEEEQ-CGIPHHLLGI-QHPNAD--FTA 103 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~-I~T~k~~~~E~-~gvphhll~~-~~~~~~--~~~ 103 (321)
+.++.+|+|.||.||||||++..|++.++...+++ |.+ +.|+.|+..+. +.+...+.+- .++... +-.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~-------g~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~llf~ 94 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPA-------GRHVVVTREPGGTRLGETLREILLNQPMDLETEALLMF 94 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGG-------TCCEEEEESSSSSHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHHhhcccc-------ceeeeeecCCCCChHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34678999999999999999999999985321111 111 11222321111 0011111111 111111 111
Q ss_pred hhHHHHHHHHHHHHhhcCCcEEEEcC--chHHHHHHhcccccc-c------c--ccCCeEEEEEeCCHHHHHHHHHHhH
Q 020775 104 QNFCDMASFSIESTLNKGKVPIIVGG--SNSYIEALVDDEDYG-F------R--WKYDCCFLWVDVSMPVLRSFVSERV 171 (321)
Q Consensus 104 ~~f~~~a~~~i~~i~~~g~~pIivGG--t~~Y~~all~g~~~~-~------r--~~~~~~~i~L~~~~~~L~~RL~~R~ 171 (321)
.+..+...+.|....++|++.|.-.- |++-+++.-.|.+.+ + . ...+.++|+|++|.+++.+|+.+|.
T Consensus 95 a~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~ 173 (227)
T 3v9p_A 95 AGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARRGAVR 173 (227)
T ss_dssp HHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTTTCCC
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 22222233445566677875444321 111111111122111 1 0 1235689999999999999998873
No 110
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.87 E-value=4.2e-06 Score=74.70 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=25.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.++.+|+|.|+.||||||++..|++.++
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999999874
No 111
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.85 E-value=7.7e-06 Score=70.49 Aligned_cols=35 Identities=14% Similarity=0.380 Sum_probs=29.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCC-CEEEecC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFP-AEIINSD 64 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~-~eiIsaD 64 (321)
.++.+|+|+|++||||||++..|+++++ ..++..|
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 3678999999999999999999999994 5666543
No 112
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.84 E-value=3.4e-05 Score=78.34 Aligned_cols=29 Identities=28% Similarity=0.482 Sum_probs=26.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+|+|+|++|||||||++.||+.++
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 34678999999999999999999999874
No 113
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=97.84 E-value=9.3e-06 Score=82.26 Aligned_cols=107 Identities=17% Similarity=0.167 Sum_probs=63.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCC-----EEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHh-
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPA-----EIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQ- 104 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~-----eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~- 104 (321)
.+.+|+++|++||||||+|..|++.++. .++++|.+ .+.+ .+ ...|+..
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i--r~~l-------------------~~----~~~f~~~e 425 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV--RTHL-------------------SR----GLGFSKED 425 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH--HHHT-------------------CT----TCCSSHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh--hhhh-------------------cc----cccccHHH
Confidence 4678999999999999999999998763 67777753 2211 00 0112211
Q ss_pred --hHHHHHHHHHHHHhhcCCcEEEEcCchHHHH---HHhccccccccccCCeEEEEEeCCHHHHHHHHH
Q 020775 105 --NFCDMASFSIESTLNKGKVPIIVGGSNSYIE---ALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFVS 168 (321)
Q Consensus 105 --~f~~~a~~~i~~i~~~g~~pIivGGt~~Y~~---all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL~ 168 (321)
.+.+.....+..+.+.|...|+ .++..|-. .+.. .+. ..++.+|+|+++.+++.+|+.
T Consensus 426 r~~~l~~i~~~~~~~l~~G~~VI~-d~~~~~~~~r~~~~~----~l~-~~d~~vV~L~~~~e~~~~Rl~ 488 (546)
T 2gks_A 426 RITNILRVGFVASEIVKHNGVVIC-ALVSPYRSARNQVRN----MME-EGKFIEVFVDAPVEVCEERDV 488 (546)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEE-ECCCCCHHHHHHHHT----TSC-TTCEEEEEEECCGGGHHHHCC
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEE-EcCCCCHHHHHHHHH----Hhh-cCCEEEEEEeCCHHHHHHHhh
Confidence 1222223345556667765444 44433211 1111 111 124688999999999999985
No 114
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.81 E-value=5.6e-06 Score=74.35 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=32.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.++.+|+|+||+|||||||+..|+++++...++.|.+
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i 61 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHF 61 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHH
Confidence 4568999999999999999999999999887887765
No 115
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.81 E-value=3.7e-05 Score=78.31 Aligned_cols=105 Identities=13% Similarity=0.197 Sum_probs=62.0
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCC------CEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccH
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFP------AEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTA 103 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~------~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~ 103 (321)
.++.+|+|+|++||||||+|..|+++++ ..+++.|.+ ++++. + ...|+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i--r~~l~-------------------~----~~~f~~ 448 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV--RHELS-------------------S----ELGFTR 448 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH--HHHTC-------------------T----TCCCSH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH--HHHhc-------------------c----ccCCCh
Confidence 3567899999999999999999999976 256666653 33321 0 011221
Q ss_pred hh---HHHHHHHHHHHHhhcCCcEEEEcCchHH------HHHHhccccccccccCCeEEEEEeCCHHHHHHHH
Q 020775 104 QN---FCDMASFSIESTLNKGKVPIIVGGSNSY------IEALVDDEDYGFRWKYDCCFLWVDVSMPVLRSFV 167 (321)
Q Consensus 104 ~~---f~~~a~~~i~~i~~~g~~pIivGGt~~Y------~~all~g~~~~~r~~~~~~~i~L~~~~~~L~~RL 167 (321)
.+ ..+.....++.+.+.|.. ||+.....| +..++. ..-.+++|||+++.+++.+|.
T Consensus 449 ~er~~~i~ri~~v~~~~~~~g~~-VI~~~is~~~~~R~~~r~l~~-------~~g~~~~V~Lda~~ev~~~R~ 513 (573)
T 1m8p_A 449 EDRHTNIQRIAFVATELTRAGAA-VIAAPIAPYEESRKFARDAVS-------QAGSFFLVHVATPLEHCEQSD 513 (573)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCE-EEEECCCCCHHHHHHHHHHHH-------TTSEEEEEEECCCHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHhCCCE-EEEEcCCCcHHHHHHHHHHHH-------hcCCeEEEEEeCCHHHHHHHh
Confidence 11 112222345566666654 444443321 111221 111357899999999999995
No 116
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.79 E-value=8.2e-06 Score=74.08 Aligned_cols=52 Identities=17% Similarity=0.152 Sum_probs=28.4
Q ss_pred CCcccccccccccccc-cccCCCcEEEEEcCCcccHHHHHHHHHhhCC-CEEEe
Q 020775 11 PAMDLSSCRPRMDLLV-SRRQKEKVLILMGATGTGKSRLSIDMATRFP-AEIIN 62 (321)
Q Consensus 11 ~~~~~~~~~~~~~~~~-~~~~~~~lIvI~GpTGSGKStLa~~LA~~l~-~eiIs 62 (321)
.+|+.++|..-.|..+ .+..++.+|+|.|+.||||||++..|++.++ ..+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ 55 (263)
T 1p5z_B 2 SHMATPPKRSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP 55 (263)
T ss_dssp ---------------------CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred CccccchhccCCCCcccccccCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence 3688888877777777 4556788999999999999999999999994 55654
No 117
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=97.78 E-value=1.9e-05 Score=70.53 Aligned_cols=27 Identities=19% Similarity=0.385 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
++++|+|.|+.||||||++..|++.+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999999874
No 118
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.76 E-value=5.1e-05 Score=64.57 Aligned_cols=34 Identities=32% Similarity=0.608 Sum_probs=27.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDK 65 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs 65 (321)
.++.+++|+||+|||||||+..+.. +.++++.|.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~d~ 40 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHFK--PTEVISSDF 40 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHSC--GGGEEEHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHcc--CCeEEccHH
Confidence 4678999999999999999998652 455677664
No 119
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.75 E-value=1.1e-05 Score=71.94 Aligned_cols=37 Identities=19% Similarity=0.310 Sum_probs=34.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.++.+|+|+|++||||||++..||+.+|..++++|.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~ 50 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 50 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCe
Confidence 4567999999999999999999999999999999985
No 120
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.71 E-value=1.8e-05 Score=71.19 Aligned_cols=43 Identities=21% Similarity=0.366 Sum_probs=34.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCE----------EEecCcceeecCcc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAE----------IINSDKIQVYEGLD 73 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~e----------iIsaDs~QvYkgl~ 73 (321)
..++.+|+|+||+|||||||+..|+..+|.. +++.|. +|+.+.
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~--~~~~l~ 74 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR--FYKVLT 74 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG--GBCCCC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc--CccccC
Confidence 4567899999999999999999999987643 677775 566543
No 121
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=97.70 E-value=5.4e-05 Score=67.00 Aligned_cols=26 Identities=19% Similarity=0.411 Sum_probs=23.7
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
++.|+|-|+-||||||++..|++.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 47899999999999999999999873
No 122
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.64 E-value=2.2e-05 Score=68.78 Aligned_cols=37 Identities=35% Similarity=0.539 Sum_probs=31.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCC-----CEEEecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFP-----AEIINSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~-----~eiIsaDs~ 66 (321)
.++.+|+|+||+|||||||+..|+..++ ..+|+.|..
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 4678999999999999999999999875 567888775
No 123
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.55 E-value=6.5e-06 Score=72.07 Aligned_cols=89 Identities=22% Similarity=0.390 Sum_probs=50.2
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHh-hcCCCcccccccCCCcccc-HhhHHHHHH
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEE-QCGIPHHLLGIQHPNADFT-AQNFCDMAS 111 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E-~~gvphhll~~~~~~~~~~-~~~f~~~a~ 111 (321)
++.|+|++|||||++|..|+.. +.++ +| |.|+.+..+| ++.|.+|.... +. .|. +..+.+ ..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~~~~-------~y----iaT~~~~d~e~~~rI~~h~~~R--~~-~w~tiE~p~~-l~ 64 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-APQV-------LY----IATSQILDDEMAARIQHHKDGR--PA-HWRTAECWRH-LD 64 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-CSSE-------EE----EECCCC------CHHHHHHHTS--CT-TEEEECCSSC-GG
T ss_pred CEEEECCCCCcHHHHHHHHHhc-CCCe-------EE----EecCCCCCHHHHHHHHHHHhcC--CC-CcEEEEcHhh-HH
Confidence 4789999999999999999987 5444 33 5565553344 45566665442 11 111 111111 11
Q ss_pred HHHHHHhhcCCcEEEEcCchHHHHHHhc
Q 020775 112 FSIESTLNKGKVPIIVGGSNSYIEALVD 139 (321)
Q Consensus 112 ~~i~~i~~~g~~pIivGGt~~Y~~all~ 139 (321)
+.+.... ....+|++.+.++|+..++.
T Consensus 65 ~~l~~~~-~~~~~VLvDclt~wl~n~l~ 91 (180)
T 1c9k_A 65 TLITADL-APDDAILLECITTMVTNLLF 91 (180)
T ss_dssp GTSCTTS-CTTCEEEEECHHHHHHHHHH
T ss_pred HHHHhhc-ccCCeEEEcCHHHHHHHHHh
Confidence 1122221 22248999999999888775
No 124
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.51 E-value=0.00042 Score=64.71 Aligned_cols=36 Identities=28% Similarity=0.401 Sum_probs=30.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDK 65 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs 65 (321)
..++-++|.||+|||||+||+.+|+.++..++..+.
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~ 84 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 84 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEch
Confidence 345689999999999999999999999988766543
No 125
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.50 E-value=0.00029 Score=69.59 Aligned_cols=28 Identities=14% Similarity=0.368 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.++.+|+++|.+||||||++..|++.++
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999999999865
No 126
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.47 E-value=9.1e-05 Score=66.71 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=25.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPA 58 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~ 58 (321)
.++.+|+|.|+.||||||++..|++.++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 35789999999999999999999998753
No 127
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.43 E-value=0.00015 Score=66.52 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.+..++|.||+|||||++|..+|+.+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34579999999999999999999987
No 128
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.39 E-value=0.00032 Score=58.73 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.+..++|+||+|||||+|+..++..+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999876
No 129
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.39 E-value=7e-05 Score=69.40 Aligned_cols=37 Identities=19% Similarity=0.129 Sum_probs=31.0
Q ss_pred ccCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecC
Q 020775 28 RRQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSD 64 (321)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaD 64 (321)
+.+.++.++|.||+|||||+||..+|+.++..++..+
T Consensus 32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~ 68 (293)
T 3t15_A 32 NIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMS 68 (293)
T ss_dssp TCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEE
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 3456678899999999999999999999987766554
No 130
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=97.36 E-value=0.00039 Score=67.56 Aligned_cols=99 Identities=8% Similarity=0.037 Sum_probs=67.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHH
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDM 109 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~ 109 (321)
..+++|||+||+| +||...|.+.++..+.+ +|..|++.|.+|++|||+
T Consensus 230 ~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~------------~tr~pR~gE~dG~~Y~Fv----------------- 277 (391)
T 3tsz_A 230 GFLRPVTIFGPIA---DVAREKLAREEPDIYQI------------AKSEPRDAGTDQRSSGII----------------- 277 (391)
T ss_dssp SSCCCEEEESTTH---HHHHHHHHHHCTTTEEE------------CCCCCCCSSSCCC--CCC-----------------
T ss_pred CCCCEEEEECCCH---HHHHHHHHhhCcccccc------------ccCCCCCcccCCccCCcC-----------------
Confidence 4678899999998 89999999887643321 477899999999999987
Q ss_pred HHHHHHHHhhcCCcEEEEcCchHHHHHHhcccccccc--ccCCeEEEEEeCCHHHHHHHHHHh
Q 020775 110 ASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFR--WKYDCCFLWVDVSMPVLRSFVSER 170 (321)
Q Consensus 110 a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r--~~~~~~~i~L~~~~~~L~~RL~~R 170 (321)
-.+.++++.++|+.+|+.=- ++|. ..++ ..++..+|.+.++.++|.+| ..|
T Consensus 278 ~~~~V~~~~~~Gk~~iLdId--------~qg~-~~l~~~~~~p~~IFI~PPS~~~L~~~-~~r 330 (391)
T 3tsz_A 278 RLHTIKQIIDQDKHALLDVT--------PNAV-DRLNYAQWYPIVVFLNPDSKQGVKTM-RMR 330 (391)
T ss_dssp CHHHHHHHHTTTCEEEECCC--------HHHH-HHHHHTTCCCEEEEEECCCHHHHHHH-HHH
T ss_pred cHHHHHHHHHcCCEEEEEeC--------HHHH-HHHHhCCCCCEEEEEeCcCHHHHHHH-Hhc
Confidence 14567888899999987521 1111 0111 12344555567789999986 444
No 131
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.31 E-value=0.00088 Score=60.57 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=28.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEec
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINS 63 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsa 63 (321)
..+..++|.||+|||||++|..+|+.++..++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 4567899999999999999999999988765543
No 132
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.30 E-value=0.00013 Score=63.58 Aligned_cols=37 Identities=19% Similarity=0.288 Sum_probs=29.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC---CCEE--EecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF---PAEI--INSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l---~~ei--IsaDs~ 66 (321)
.++.+|+|+||+||||||++..|+..+ ++.+ ++.|..
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 456899999999999999999999865 5544 455654
No 133
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.28 E-value=0.00013 Score=67.99 Aligned_cols=38 Identities=21% Similarity=0.265 Sum_probs=31.7
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC-------CEEE-ecCcc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP-------AEII-NSDKI 66 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~-------~eiI-saDs~ 66 (321)
..++.+|+|+||+|||||||+..|++.++ ..++ +.|++
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 73 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence 34678999999999999999999998874 2344 99996
No 134
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.26 E-value=0.00022 Score=66.01 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=32.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDK 65 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs 65 (321)
...++.++|.||+|||||+||+.||+.++..++..+.
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~ 82 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 82 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECH
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh
Confidence 3567789999999999999999999999988877653
No 135
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.26 E-value=0.0002 Score=68.14 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDK 65 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs 65 (321)
.++-|+|.||+|||||+||..+|+.++..++..+.
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~ 117 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 117 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeH
Confidence 44568999999999999999999999988776543
No 136
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.24 E-value=0.0002 Score=59.59 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.+..++|.||+|+|||+++..+++.+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999986
No 137
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.21 E-value=0.00019 Score=64.24 Aligned_cols=36 Identities=22% Similarity=0.371 Sum_probs=31.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSD 64 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaD 64 (321)
.++...++|.||+|||||++|..||+.+.+.+++.+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fa 90 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFV 90 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCC
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEE
Confidence 455568999999999999999999999988887654
No 138
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.21 E-value=0.00026 Score=64.10 Aligned_cols=36 Identities=33% Similarity=0.410 Sum_probs=30.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDK 65 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs 65 (321)
..+.-++|.||+|||||+++..+|+.++..++..+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~ 84 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVG 84 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEG
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 456789999999999999999999999987765443
No 139
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.19 E-value=0.00021 Score=64.03 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=28.9
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDK 65 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs 65 (321)
.++-++|.||+|||||++++.||..++..++..|.
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~ 78 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG 78 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECS
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeH
Confidence 35568999999999999999999998876655443
No 140
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.18 E-value=0.0002 Score=63.76 Aligned_cols=34 Identities=26% Similarity=0.380 Sum_probs=28.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEec
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINS 63 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsa 63 (321)
..++-++|.||+|||||++|..+|+.++..++..
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~ 70 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAM 70 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEe
Confidence 4566789999999999999999999988765543
No 141
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.16 E-value=0.00024 Score=66.87 Aligned_cols=34 Identities=24% Similarity=0.381 Sum_probs=30.9
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEe
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIIN 62 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIs 62 (321)
.+++.+++|+||+|||||||+..|+.-+.|.|+.
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~~ 156 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLS 156 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHHTCEEEC
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhcCceEEE
Confidence 6788999999999999999999999988888764
No 142
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.16 E-value=0.0003 Score=58.44 Aligned_cols=26 Identities=27% Similarity=0.530 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.+..++|.||+|||||+++..+++.+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999986
No 143
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.15 E-value=0.00029 Score=64.33 Aligned_cols=33 Identities=36% Similarity=0.525 Sum_probs=28.9
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEec
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINS 63 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsa 63 (321)
.+..++|.||+|||||++|..+|+.++..++..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i 85 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNI 85 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 467899999999999999999999998776543
No 144
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=97.12 E-value=0.00071 Score=67.33 Aligned_cols=96 Identities=7% Similarity=0.015 Sum_probs=56.0
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHHH
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCDM 109 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~~ 109 (321)
..+++|||+||+|+| |...|.+.++..+.+ .+|+ |++.|..|+.|||.
T Consensus 222 ~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s-----------~~TR-pR~gE~dG~~Y~FT----------------- 269 (468)
T 3shw_A 222 GFLRPVTIFGPIADV---AREKLAREEPDIYQI-----------AKSE-PRDAGTDQRSSGII----------------- 269 (468)
T ss_dssp SSCCCEEEESTTHHH---HHHHHHHHCTTTEEE-----------CCCB-C----------CBC-----------------
T ss_pred CCCCEEEEECCCHHH---HHHHHHHhCCCceee-----------ecCC-CCCcccccccCCcc-----------------
Confidence 467889999999999 888888887643322 2477 99999999999881
Q ss_pred HHHHHHHHhhcCCcEEEEcCchHHHHHHhcccccccc--ccCCeEEEEEeCCHHHHHHH
Q 020775 110 ASFSIESTLNKGKVPIIVGGSNSYIEALVDDEDYGFR--WKYDCCFLWVDVSMPVLRSF 166 (321)
Q Consensus 110 a~~~i~~i~~~g~~pIivGGt~~Y~~all~g~~~~~r--~~~~~~~i~L~~~~~~L~~R 166 (321)
-.+.++++.++|+.+|+.=- ++|. ..++ ..+...+|.+.++.++|.++
T Consensus 270 s~~~V~~vl~~Gk~~iLdId--------~qg~-~~l~~~~~~p~~IFI~PPS~e~L~~~ 319 (468)
T 3shw_A 270 RLHTIKQIIDQDKHALLDVT--------PNAV-DRLNYAQWYPIVVFLNPDSKQGVKTM 319 (468)
T ss_dssp CHHHHHHHHTTTCEEEECCC--------HHHH-HHHHHTTCCCEEEEEECSCHHHHHHH
T ss_pred cHHHHHHHHHCCCeEEEEeC--------HHHH-HHHHhcCCCCEEEEEeCcCHHHHHHH
Confidence 23457788899999987511 1110 0111 12344555567789999874
No 145
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.12 E-value=0.00016 Score=61.30 Aligned_cols=27 Identities=26% Similarity=0.518 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..+..++|+||+|||||||+..++..+
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 356899999999999999999999875
No 146
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.09 E-value=0.00027 Score=66.95 Aligned_cols=36 Identities=25% Similarity=0.425 Sum_probs=30.9
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.+..++|.||||||||++|..||+.++..++..|..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~ 85 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADAT 85 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechH
Confidence 456789999999999999999999999887766543
No 147
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.06 E-value=0.00035 Score=67.59 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=31.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEec
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINS 63 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsa 63 (321)
.+++.+++|+||+|||||||+..|+..+++.+++.
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~ 200 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV 200 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEE
Confidence 56778999999999999999999999998887763
No 148
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.03 E-value=0.00029 Score=62.12 Aligned_cols=27 Identities=26% Similarity=0.474 Sum_probs=24.9
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHH
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMA 53 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA 53 (321)
++.+++.+++|+||+|||||||+..|+
T Consensus 25 Ggi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 567789999999999999999999988
No 149
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.01 E-value=0.00039 Score=68.44 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=33.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.+.++=|.+.||+|||||.||.++|..++..+++.+.-
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~ 240 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecc
Confidence 55677899999999999999999999999988776543
No 150
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.00 E-value=0.00072 Score=58.71 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCC-----CEEEecCc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFP-----AEIINSDK 65 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~-----~eiIsaDs 65 (321)
.+..++|.||+|||||+++..+++.+. ...++++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~ 90 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGI 90 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence 567899999999999999999998763 24555544
No 151
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.00 E-value=0.00036 Score=66.30 Aligned_cols=35 Identities=29% Similarity=0.503 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDK 65 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs 65 (321)
.+..++|.||+|||||++|+.||+.++..++..|.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~ 105 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDA 105 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecc
Confidence 34578999999999999999999999877766554
No 152
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=96.99 E-value=0.00032 Score=63.77 Aligned_cols=34 Identities=26% Similarity=0.488 Sum_probs=28.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSD 64 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaD 64 (321)
.+..++|.||+|||||++|..+|+.++..++..|
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~ 82 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 4567889999999999999999999987665443
No 153
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.00043 Score=68.23 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=32.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDK 65 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs 65 (321)
.+.++=|.+.||+|||||.||.++|..++..+++.+.
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~ 248 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAA 248 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEeh
Confidence 5667889999999999999999999999998776544
No 154
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.96 E-value=0.00036 Score=60.67 Aligned_cols=29 Identities=21% Similarity=0.396 Sum_probs=26.3
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
++.+++.+++|+||+|||||||+..|+..
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 55778899999999999999999999974
No 155
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.00047 Score=68.05 Aligned_cols=37 Identities=32% Similarity=0.400 Sum_probs=32.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDK 65 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs 65 (321)
.+.++=|.+.||+|||||.||.++|..++..+++.+.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~ 248 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPA 248 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 5567889999999999999999999999988776543
No 156
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=96.94 E-value=0.00037 Score=61.96 Aligned_cols=30 Identities=13% Similarity=0.271 Sum_probs=26.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCE
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAE 59 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~e 59 (321)
..++.+|+|.||+||||||++..|+.. +++
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~ 46 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY-KND 46 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG-TTT
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc-cCC
Confidence 356789999999999999999999987 543
No 157
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.94 E-value=0.00044 Score=61.83 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=26.6
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSD 64 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaD 64 (321)
+-++|+||+|||||+|++.|+..++..++..+
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~ 81 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEARVPFITAS 81 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence 34999999999999999999999876555443
No 158
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=96.93 E-value=0.00045 Score=64.95 Aligned_cols=38 Identities=16% Similarity=0.305 Sum_probs=30.9
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC-------CEEEecCcc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP-------AEIINSDKI 66 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~-------~eiIsaDs~ 66 (321)
..++.+|+|+||+|||||||+..|+..+. ..+|+.|..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 45688999999999999999999998652 346777764
No 159
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.92 E-value=0.00066 Score=60.48 Aligned_cols=28 Identities=21% Similarity=0.370 Sum_probs=25.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPA 58 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~ 58 (321)
++.+|+|.|+.||||||++..|++.+++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~ 28 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4678999999999999999999999953
No 160
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.92 E-value=0.00056 Score=58.02 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=25.8
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.+++.+++|+||+|||||||.+.|+..+
T Consensus 30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3677899999999999999999999987
No 161
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.91 E-value=0.00053 Score=62.99 Aligned_cols=31 Identities=26% Similarity=0.369 Sum_probs=26.5
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEec
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINS 63 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsa 63 (321)
+=++|.||+|||||+|++.||..++...|..
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~~~~~i~i 75 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANESGLNFISV 75 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHcCCCEEEE
Confidence 3399999999999999999999988765543
No 162
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.91 E-value=0.00047 Score=67.42 Aligned_cols=37 Identities=30% Similarity=0.382 Sum_probs=32.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDK 65 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs 65 (321)
.+.++=|.+.||+|||||.||+++|...+..+++.+.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~ 215 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSG 215 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEh
Confidence 5567789999999999999999999999998877554
No 163
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.90 E-value=0.00051 Score=62.90 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=25.1
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+|||||||||+...|+..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 5678899999999999999999998764
No 164
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.86 E-value=0.00089 Score=62.79 Aligned_cols=33 Identities=30% Similarity=0.428 Sum_probs=27.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC-CCEEEe
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF-PAEIIN 62 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l-~~eiIs 62 (321)
..++-++|.||+|||||+||..+|+.+ +..+++
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~ 76 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFS 76 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEE
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCCCcEEE
Confidence 345789999999999999999999998 666544
No 165
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.86 E-value=0.00074 Score=64.12 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=29.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSD 64 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaD 64 (321)
..++-++|.||+|||||+||..+|+.++..++..+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~ 149 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSIS 149 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEe
Confidence 35678999999999999999999999998765443
No 166
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.85 E-value=0.00049 Score=69.17 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPA 58 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~ 58 (321)
.+.+|+|+|++||||||+|..||++++.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 5578999999999999999999999974
No 167
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.85 E-value=0.0005 Score=61.90 Aligned_cols=29 Identities=21% Similarity=0.295 Sum_probs=26.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||.+.|+.-+.
T Consensus 28 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 28 IKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 56789999999999999999999997653
No 168
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.83 E-value=0.00047 Score=59.44 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=22.7
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCC
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPA 58 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~ 58 (321)
.++|+||+|||||||...|+..++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999998763
No 169
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.82 E-value=0.00028 Score=61.63 Aligned_cols=40 Identities=23% Similarity=0.426 Sum_probs=35.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEG 71 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkg 71 (321)
.+.-++|+|++|+||||+|.+|.++ |..+|+=|...+++.
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r-G~~lvaDD~v~i~~~ 54 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR-GHQLVCDDVIDLKQE 54 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT-TCEEEESSEEEEEES
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeEecCCEEEEEEe
Confidence 4678999999999999999999985 889999999888774
No 170
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.82 E-value=0.0007 Score=58.46 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=25.6
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHh
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMAT 54 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~ 54 (321)
++.+++.+++|+||+|||||||+..+|.
T Consensus 15 Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 15 GGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567889999999999999999999997
No 171
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.82 E-value=0.00088 Score=66.86 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=31.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
.++.++|+||+|+|||++|..+|+.++..++..+.-
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s 111 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 111 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 357899999999999999999999999887765543
No 172
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.80 E-value=0.00068 Score=62.98 Aligned_cols=33 Identities=21% Similarity=0.333 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEec
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINS 63 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsa 63 (321)
....++|.||+|||||++|..+|+.++..++..
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 345789999999999999999999998765443
No 173
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.79 E-value=0.00065 Score=58.84 Aligned_cols=30 Identities=23% Similarity=0.342 Sum_probs=25.9
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
++.+++.+++|+||+|||||||+..|+...
T Consensus 18 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 18 GGIPQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TSEETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356678999999999999999999999653
No 174
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.79 E-value=0.00066 Score=67.12 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDK 65 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs 65 (321)
.++-|+++||+|||||++|+.||+.++..++..|.
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~ 83 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence 34679999999999999999999999988877664
No 175
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.78 E-value=0.001 Score=63.65 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDK 65 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs 65 (321)
.+.-++|.||+|+|||+||..+|+.++..++..+.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~ 181 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISA 181 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeH
Confidence 35789999999999999999999999988766554
No 176
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.77 E-value=0.00026 Score=63.62 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=27.5
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecC
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSD 64 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaD 64 (321)
++-++|.||+|||||++|..+|+.++..++..+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~ 76 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMG 76 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEec
Confidence 445889999999999999999999877655543
No 177
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.77 E-value=0.00071 Score=61.55 Aligned_cols=31 Identities=26% Similarity=0.448 Sum_probs=26.1
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecC
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSD 64 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaD 64 (321)
-++|+||+|||||+|+..|+..++..+|..+
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~ 105 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARVPFITAS 105 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEECCCcChHHHHHHHHHHHcCCCEEEec
Confidence 4899999999999999999999876555443
No 178
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.76 E-value=0.00065 Score=55.95 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..+.-|+|.||+|||||++|+.|+...
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 344568999999999999999999875
No 179
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.76 E-value=0.00067 Score=63.76 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=25.7
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEE
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEI 60 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~ei 60 (321)
+..++|+||+|+|||||++.+|..++..+
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 36799999999999999999999987654
No 180
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.76 E-value=0.0018 Score=56.68 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=21.6
Q ss_pred EEEEEcCCcccHHHHHHHHHhhC
Q 020775 34 VLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l 56 (321)
+|+|-|+-||||||++..|++.+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999987
No 181
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.76 E-value=0.0007 Score=67.25 Aligned_cols=37 Identities=30% Similarity=0.333 Sum_probs=32.7
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDK 65 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs 65 (321)
.+.++=|.+.||+|||||.||.++|..++..+++.+.
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~ 276 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIG 276 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEh
Confidence 5678889999999999999999999999998876554
No 182
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.74 E-value=0.0009 Score=60.98 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=26.5
Q ss_pred ccccCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 26 VSRRQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 26 ~~~~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
.++.+++.+++|+||+|||||||+..++..
T Consensus 24 lggl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 24 LPNMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp ETTEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ECCccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 356778899999999999999999999864
No 183
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.74 E-value=0.00089 Score=65.97 Aligned_cols=37 Identities=32% Similarity=0.382 Sum_probs=32.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDK 65 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs 65 (321)
.+.++=|.+.||+|||||.||.++|..++..+++.+.
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~ 249 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVG 249 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEES
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEH
Confidence 5567889999999999999999999999998877654
No 184
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.71 E-value=0.00062 Score=60.76 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=25.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||.+.|+.-+
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5678899999999999999999999765
No 185
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.71 E-value=0.00074 Score=60.82 Aligned_cols=28 Identities=21% Similarity=0.381 Sum_probs=25.7
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+.-+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5688999999999999999999999876
No 186
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.69 E-value=0.00077 Score=59.12 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=26.3
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
++.+++.+++|+||+|||||||+..|+..
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 55678899999999999999999999984
No 187
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.67 E-value=0.0008 Score=61.56 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=26.1
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||.+.|+.-+.
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56889999999999999999999998653
No 188
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.65 E-value=0.00073 Score=62.50 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=25.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||.+.|+.-+
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 5678999999999999999999999865
No 189
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.64 E-value=0.00087 Score=60.49 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=26.1
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||...|+.-+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56889999999999999999999998753
No 190
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.64 E-value=0.0009 Score=62.63 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=25.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+||||||++..||..+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999999875
No 191
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.64 E-value=0.001 Score=57.12 Aligned_cols=24 Identities=38% Similarity=0.502 Sum_probs=22.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++|.||+|||||+|+..++..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999999999875
No 192
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.64 E-value=0.00077 Score=61.93 Aligned_cols=28 Identities=21% Similarity=0.361 Sum_probs=25.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||.+.|+.-+
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 5678999999999999999999999865
No 193
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.63 E-value=0.0016 Score=56.09 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
+.++++|+|++|||||||+..|+..+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 45789999999999999999999874
No 194
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.63 E-value=0.0038 Score=64.98 Aligned_cols=23 Identities=35% Similarity=0.664 Sum_probs=21.8
Q ss_pred EEEEEcCCcccHHHHHHHHHhhC
Q 020775 34 VLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.++|+||||||||++|+.||+.+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 59999999999999999999986
No 195
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.60 E-value=0.00061 Score=56.07 Aligned_cols=32 Identities=9% Similarity=0.142 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEec
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINS 63 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsa 63 (321)
.+.-|+|.||+|||||++|+.++...+ .++..
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~ 57 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSP 57 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECC
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEe
Confidence 445688999999999999999998776 44433
No 196
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.59 E-value=0.00094 Score=59.77 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=26.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||...|+..+.
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 56788999999999999999999998763
No 197
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.59 E-value=0.00099 Score=62.44 Aligned_cols=26 Identities=23% Similarity=0.570 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
++.+++|+||+||||||++..||..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 57899999999999999999999765
No 198
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.59 E-value=0.00078 Score=57.93 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=22.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
++++|+|++|||||||+..|+..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999875
No 199
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.58 E-value=0.00098 Score=61.18 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=26.1
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||.+.|+.-+.
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 56889999999999999999999998753
No 200
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.58 E-value=0.00089 Score=60.37 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||.+.|+.-+
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 5678899999999999999999999865
No 201
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.58 E-value=0.0014 Score=61.64 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.++.+|+|+||+||||||++..||..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 467899999999999999999999875
No 202
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.58 E-value=0.0011 Score=59.13 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=26.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPA 58 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~ 58 (321)
.++++|+|.|+.||||||++..|++.++.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46789999999999999999999999976
No 203
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.58 E-value=0.001 Score=65.29 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=30.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCC--CEEEecCccee
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFP--AEIINSDKIQV 68 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~--~eiIsaDs~Qv 68 (321)
.+.-+++.||+|||||++|..+|+.++ ..++..+.-.+
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~ 101 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV 101 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGG
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHH
Confidence 446799999999999999999999998 66666554433
No 204
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.58 E-value=0.00089 Score=60.98 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=25.9
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||.+.|+.-+.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56788999999999999999999998753
No 205
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.57 E-value=0.00092 Score=60.64 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=26.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||...|+.-+.
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56788999999999999999999998753
No 206
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.56 E-value=0.0011 Score=58.04 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=25.6
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
++.+++.+++|+||+|||||+|+..++..
T Consensus 18 gGl~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 18 GGIPERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp TSEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 55678899999999999999999988765
No 207
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.56 E-value=0.0012 Score=60.62 Aligned_cols=27 Identities=41% Similarity=0.597 Sum_probs=25.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..++.+++|+||+|||||||.+.|+.-
T Consensus 43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 43 VHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 568899999999999999999999985
No 208
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.56 E-value=0.0011 Score=60.24 Aligned_cols=27 Identities=41% Similarity=0.484 Sum_probs=24.8
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..++.+++|+||+|||||||...|+.-
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 567889999999999999999999985
No 209
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.55 E-value=0.0011 Score=60.61 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=26.1
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||...|+.-+.
T Consensus 43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 56889999999999999999999998654
No 210
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.55 E-value=0.0021 Score=62.99 Aligned_cols=35 Identities=29% Similarity=0.392 Sum_probs=29.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC-CCEEEecC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF-PAEIINSD 64 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l-~~eiIsaD 64 (321)
..++-++|.||+|||||+||..+|..+ +..+++.+
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~ 200 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 200 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEEC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEe
Confidence 345789999999999999999999998 66665544
No 211
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.55 E-value=0.0011 Score=60.62 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=26.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||.+.|+.-+.
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56788999999999999999999998653
No 212
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.54 E-value=0.0011 Score=63.41 Aligned_cols=29 Identities=34% Similarity=0.631 Sum_probs=26.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
...+.+++|+||||||||||...|+..++
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 45678999999999999999999998764
No 213
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.54 E-value=0.0011 Score=56.74 Aligned_cols=26 Identities=19% Similarity=0.413 Sum_probs=23.4
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
+..++|.||+|+|||+++..+++.++
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45899999999999999999998764
No 214
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.53 E-value=0.0012 Score=59.68 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=24.8
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..+ .+++|+||+|||||||.+.|+.-+.
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456 8999999999999999999998753
No 215
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.53 E-value=0.0011 Score=60.88 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=26.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||...|+.-+.
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56889999999999999999999998763
No 216
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.52 E-value=0.00088 Score=59.64 Aligned_cols=29 Identities=28% Similarity=0.410 Sum_probs=25.7
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||...|+.-+.
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45788999999999999999999998653
No 217
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.51 E-value=0.0012 Score=60.50 Aligned_cols=29 Identities=31% Similarity=0.391 Sum_probs=25.9
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||.+.|+.-+.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 56788999999999999999999998653
No 218
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.51 E-value=0.0011 Score=60.47 Aligned_cols=24 Identities=29% Similarity=0.636 Sum_probs=22.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++|.||+|||||++|..||+.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 479999999999999999999986
No 219
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.51 E-value=0.0069 Score=59.80 Aligned_cols=35 Identities=29% Similarity=0.570 Sum_probs=29.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC-----CCEEEecCc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF-----PAEIINSDK 65 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l-----~~eiIsaDs 65 (321)
++.+|+++|++||||||++..||..+ ..-++.+|.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~ 138 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT 138 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 57899999999999999999999754 345788885
No 220
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.49 E-value=0.0012 Score=62.11 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=26.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.+++.+++|+||+|||||||...|+.-+.
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 56889999999999999999999998763
No 221
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.47 E-value=0.0017 Score=60.08 Aligned_cols=35 Identities=14% Similarity=0.338 Sum_probs=29.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSD 64 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaD 64 (321)
..+.++++.||+|+|||+++..+|+.++..++..+
T Consensus 46 ~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 46 KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 34578889999999999999999999987766544
No 222
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.47 E-value=0.001 Score=61.11 Aligned_cols=30 Identities=27% Similarity=0.454 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEE
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEI 60 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~ei 60 (321)
.+..++|.||+|+|||++|..+++.++..+
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~ 66 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNL 66 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 446789999999999999999999987654
No 223
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.47 E-value=0.0013 Score=62.36 Aligned_cols=27 Identities=26% Similarity=0.511 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.++.+++|+||+||||||++..||..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999999865
No 224
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.46 E-value=0.0012 Score=58.52 Aligned_cols=27 Identities=22% Similarity=0.480 Sum_probs=24.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..++.+++|+||+|||||||...|+..
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999999875
No 225
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.46 E-value=0.0014 Score=56.47 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
+.++++|+|++|||||||...|+..+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 45799999999999999999998764
No 226
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.45 E-value=0.0012 Score=60.10 Aligned_cols=29 Identities=34% Similarity=0.453 Sum_probs=26.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||.+.|+.-+.
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 56788999999999999999999998764
No 227
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.45 E-value=0.0014 Score=63.03 Aligned_cols=28 Identities=29% Similarity=0.470 Sum_probs=24.9
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+|||||||||+...|+..+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4567899999999999999999999864
No 228
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.45 E-value=0.0018 Score=54.58 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=23.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPA 58 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~ 58 (321)
.+.+|+||+|||||||..+|+-.+++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 48999999999999999999987753
No 229
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.45 E-value=0.0012 Score=61.10 Aligned_cols=29 Identities=31% Similarity=0.348 Sum_probs=26.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||.+.|+.-+.
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 56788999999999999999999998753
No 230
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.44 E-value=0.0013 Score=61.02 Aligned_cols=26 Identities=23% Similarity=0.353 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.+..++|.||+|||||+|+..+++.+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 34679999999999999999999976
No 231
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.43 E-value=0.0013 Score=61.40 Aligned_cols=27 Identities=33% Similarity=0.480 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..+..++|+||+|+|||+++..+++.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999987
No 232
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.42 E-value=0.0015 Score=62.80 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=25.1
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+||||||++..||..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3467899999999999999999999875
No 233
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.41 E-value=0.0018 Score=60.69 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.+..++|.||+|+|||+++..+++.+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999876
No 234
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.41 E-value=0.0013 Score=59.93 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=25.9
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||...|+.-+.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp EETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56788999999999999999999998753
No 235
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.41 E-value=0.0016 Score=60.61 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..+..++|.||+|+|||+|+..+++.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999976
No 236
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.41 E-value=0.0014 Score=55.57 Aligned_cols=24 Identities=33% Similarity=0.581 Sum_probs=21.8
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
+.++|.||+|+|||+++..+++.+
T Consensus 39 ~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 349999999999999999999875
No 237
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.37 E-value=0.0016 Score=60.64 Aligned_cols=35 Identities=29% Similarity=0.474 Sum_probs=28.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC----C--CEEEecCc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF----P--AEIINSDK 65 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l----~--~eiIsaDs 65 (321)
++.+++|+||+||||||++..||..+ | .-++.+|.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 57899999999999999999999654 2 24677775
No 238
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.36 E-value=0.0019 Score=61.93 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.+..+++|+|||||||||+...|+..+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 455699999999999999999998765
No 239
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.35 E-value=0.0019 Score=59.13 Aligned_cols=30 Identities=20% Similarity=0.356 Sum_probs=26.5
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.+..++.+++|+||+|+|||||+..||..+
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 456788999999999999999999998764
No 240
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.32 E-value=0.0015 Score=56.88 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.9
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.+++|+||+|||||||...|+..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 478999999999999999999875
No 241
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.32 E-value=0.0027 Score=63.30 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=30.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSD 64 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaD 64 (321)
..+.-++|.||+|||||++|+.+|..++..++..+
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn 270 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEE
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEE
Confidence 45667999999999999999999999998876544
No 242
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.32 E-value=0.0018 Score=63.36 Aligned_cols=28 Identities=21% Similarity=0.380 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.+..+++|+|||||||||+...|+..++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4567999999999999999999988753
No 243
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.31 E-value=0.0023 Score=64.41 Aligned_cols=30 Identities=30% Similarity=0.513 Sum_probs=26.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEE
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEI 60 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~ei 60 (321)
+++.++|+||+|||||+|++.||..++...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 567899999999999999999999987554
No 244
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.31 E-value=0.0027 Score=62.48 Aligned_cols=31 Identities=32% Similarity=0.429 Sum_probs=27.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEec
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINS 63 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsa 63 (321)
..++|.||+|||||++|..||+.++..++..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 5699999999999999999999998776543
No 245
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.30 E-value=0.0022 Score=60.02 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=22.1
Q ss_pred EEEEEcCCcccHHHHHHHHHhhC
Q 020775 34 VLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.++|+||+|+|||+++..+++.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999887
No 246
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.27 E-value=0.002 Score=55.64 Aligned_cols=26 Identities=15% Similarity=0.333 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
++++++++||+||||||++..++.++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999888764
No 247
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.27 E-value=0.0022 Score=63.80 Aligned_cols=33 Identities=27% Similarity=0.384 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEec
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINS 63 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsa 63 (321)
.++-++|+||+|||||+|++.+|...+..++..
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~~~~f~~i 80 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEANVPFFHI 80 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeC
Confidence 345689999999999999999999988776544
No 248
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.26 E-value=0.0021 Score=61.84 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=25.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||.+.||.-.
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence 5678999999999999999999999865
No 249
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.26 E-value=0.0023 Score=59.32 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=26.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEE
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEII 61 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiI 61 (321)
+.-++|.||+|+|||+++..+|+.++..++
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 356899999999999999999999986643
No 250
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.26 E-value=0.0019 Score=60.48 Aligned_cols=27 Identities=26% Similarity=0.597 Sum_probs=24.6
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCC
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPA 58 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~ 58 (321)
+..++|.||+|+|||++|+.+|+.++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 468999999999999999999999864
No 251
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.26 E-value=0.0019 Score=60.07 Aligned_cols=29 Identities=24% Similarity=0.476 Sum_probs=26.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||.+.|+.-+.
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 56889999999999999999999998763
No 252
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.26 E-value=0.016 Score=54.97 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=29.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC-----CCEEEecCcceeecC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF-----PAEIINSDKIQVYEG 71 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l-----~~eiIsaDs~QvYkg 71 (321)
.+..+|+|+|++|+|||||+..|+..+ ..-++.+|--.-+.+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~ 123 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTG 123 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-------
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCccc
Confidence 456799999999999999999998765 345778775433333
No 253
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.25 E-value=0.0018 Score=61.28 Aligned_cols=29 Identities=28% Similarity=0.400 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
...+.+++|+||||||||||...|+..++
T Consensus 168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34567999999999999999999998864
No 254
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.25 E-value=0.0023 Score=60.81 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=24.8
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCC
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPA 58 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~ 58 (321)
...++|+||+|||||||+..|+..++.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 678999999999999999999998764
No 255
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.24 E-value=0.0029 Score=66.83 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=32.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDK 65 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs 65 (321)
...++=|++.||+|||||+||+.+|..++..++..|.
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~ 271 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLING 271 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEh
Confidence 4567889999999999999999999999998876554
No 256
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.21 E-value=0.0032 Score=59.36 Aligned_cols=36 Identities=28% Similarity=0.466 Sum_probs=28.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC---CC--EEEecCc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF---PA--EIINSDK 65 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l---~~--eiIsaDs 65 (321)
.++.+|+|+||+|+||||++..||..+ ++ -++.+|-
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 467899999999999999999999765 33 3556664
No 257
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.21 E-value=0.0027 Score=60.43 Aligned_cols=30 Identities=20% Similarity=0.384 Sum_probs=27.1
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.+.+++.++.|+||+|||||||+..++...
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457788999999999999999999999875
No 258
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.20 E-value=0.0028 Score=56.84 Aligned_cols=27 Identities=22% Similarity=0.402 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.+..++|.||+|||||++|+.+++..+
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 446788999999999999999998864
No 259
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.19 E-value=0.0026 Score=60.17 Aligned_cols=28 Identities=18% Similarity=0.291 Sum_probs=25.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
...++.+.|.||+|||||+++..+++.+
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3567899999999999999999999987
No 260
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.18 E-value=0.0027 Score=55.62 Aligned_cols=29 Identities=24% Similarity=0.450 Sum_probs=25.8
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
++.+++.+++|+|++|+|||+++..+|.+
T Consensus 25 GGl~~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 56788999999999999999999998753
No 261
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.17 E-value=0.0026 Score=62.62 Aligned_cols=35 Identities=20% Similarity=0.405 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC---C--CEEEecCc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF---P--AEIINSDK 65 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l---~--~eiIsaDs 65 (321)
++.+|+++||+||||||++..||..+ + .-++.+|-
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 57899999999999999999999765 3 34678884
No 262
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.17 E-value=0.0026 Score=61.15 Aligned_cols=29 Identities=21% Similarity=0.421 Sum_probs=26.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||.+.||.-..
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 56788999999999999999999998653
No 263
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=96.17 E-value=0.0023 Score=61.17 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=25.9
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||.+.||.-..
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 56788999999999999999999998653
No 264
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.17 E-value=0.0025 Score=61.72 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=26.1
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||.+.||.-..
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 56789999999999999999999998763
No 265
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.16 E-value=0.017 Score=61.14 Aligned_cols=35 Identities=23% Similarity=0.431 Sum_probs=28.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC----------CCEEEecCc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF----------PAEIINSDK 65 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l----------~~eiIsaDs 65 (321)
.+..++|+||+|+|||+++..||+.+ +..++..|-
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 34568999999999999999999987 666666553
No 266
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.15 E-value=0.003 Score=66.60 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=30.8
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSD 64 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaD 64 (321)
...+..|+|+||+|||||+|++.||..++..++..+
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~ 270 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 356678999999999999999999999988766544
No 267
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.15 E-value=0.0026 Score=61.27 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=25.6
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||.+.|+.-.
T Consensus 51 i~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 51 VPAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 5688999999999999999999999865
No 268
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.14 E-value=0.0013 Score=63.32 Aligned_cols=28 Identities=25% Similarity=0.510 Sum_probs=25.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEE
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEI 60 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~ei 60 (321)
+.|+|+||+||||||++..||+.++..+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 4599999999999999999999987666
No 269
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.14 E-value=0.0027 Score=61.10 Aligned_cols=29 Identities=28% Similarity=0.510 Sum_probs=26.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||.+.||.-..
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 56788999999999999999999998753
No 270
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=96.14 E-value=0.0023 Score=61.26 Aligned_cols=28 Identities=18% Similarity=0.237 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||.+.||.-.
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 5678899999999999999999999865
No 271
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.13 E-value=0.0025 Score=58.49 Aligned_cols=27 Identities=22% Similarity=0.457 Sum_probs=24.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.. +.+++|+||+|||||||.+.|+..+
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 56 8899999999999999999999764
No 272
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.13 E-value=0.0025 Score=61.21 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=25.9
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||.+.||.-..
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 56788999999999999999999998653
No 273
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.10 E-value=0.0028 Score=61.11 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=26.1
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||.+.||.-..
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 56789999999999999999999998653
No 274
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=96.09 E-value=0.0027 Score=63.63 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=24.9
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||+..||..+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 3567899999999999999999999865
No 275
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.06 E-value=0.0028 Score=63.57 Aligned_cols=29 Identities=21% Similarity=0.292 Sum_probs=25.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
...+..++|+|||||||||+...|+..++
T Consensus 257 v~~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 257 IEHKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp HHTTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HhCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34677899999999999999999998764
No 276
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.06 E-value=0.0035 Score=58.67 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
+-++++|+|++|||||||...|+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 45799999999999999999999765
No 277
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.06 E-value=0.0032 Score=62.16 Aligned_cols=27 Identities=22% Similarity=0.516 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..+..++|+||+|+|||+++..||+.+
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 345578899999999999999999986
No 278
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=96.03 E-value=0.026 Score=53.02 Aligned_cols=113 Identities=11% Similarity=0.095 Sum_probs=68.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHH
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCD 108 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~ 108 (321)
...+.+|++=|.=|||||+.+..|.+.++-.-+. -+.+.+|+.+|+. ||++-
T Consensus 83 ~~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~----------V~~~~~Pt~eE~~---~~yl~--------------- 134 (304)
T 3czq_A 83 TGKRVMAVFEGRDAAGKGGAIHATTANMNPRSAR----------VVALTKPTETERG---QWYFQ--------------- 134 (304)
T ss_dssp HCCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEE----------EEECCSCCHHHHT---SCTTH---------------
T ss_pred cCCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCe----------EEEeCCcChHHHh---chHHH---------------
Confidence 3568899999999999999999999998532111 1346789988875 33220
Q ss_pred HHHHHHHHHhhcCCcEEEEcCc---hHHHHHHhccccc-----------c----c-cccCCeEEEEEeCCHHHHHHHHHH
Q 020775 109 MASFSIESTLNKGKVPIIVGGS---NSYIEALVDDEDY-----------G----F-RWKYDCCFLWVDVSMPVLRSFVSE 169 (321)
Q Consensus 109 ~a~~~i~~i~~~g~~pIivGGt---~~Y~~all~g~~~-----------~----~-r~~~~~~~i~L~~~~~~L~~RL~~ 169 (321)
.....+-++|++.|.-... ..| +.+-.+.+. . + ......+.|||+.+.++..+|+.+
T Consensus 135 ---R~~~~LP~~G~IvIfDRswYs~v~~-~rv~g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR~~~ 210 (304)
T 3czq_A 135 ---RYVATFPTAGEFVLFDRSWYNRAGV-EPVMGFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKRFHD 210 (304)
T ss_dssp ---HHHTTCCCTTCEEEEEECGGGGTTH-HHHHTSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHHHHH
T ss_pred ---HHHHhcccCCeEEEEECCcchHHHH-HHHhcCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHHHHH
Confidence 1122333566655543321 001 111111100 0 0 123466889999999999999988
Q ss_pred hHHH
Q 020775 170 RVDR 173 (321)
Q Consensus 170 R~~~ 173 (321)
|.+.
T Consensus 211 R~~d 214 (304)
T 3czq_A 211 RRHD 214 (304)
T ss_dssp HHHC
T ss_pred hhcC
Confidence 8643
No 279
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=96.03 E-value=0.0029 Score=61.02 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=25.8
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.+++|+||+|||||||.+.||.-..
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 26 VKDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EcCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 45788999999999999999999998653
No 280
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.02 E-value=0.0042 Score=62.18 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=27.7
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecC
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSD 64 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaD 64 (321)
++-++|+||+|||||+|++.||...+..++..+
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~ 96 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEARVPFITAS 96 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 445999999999999999999999887665544
No 281
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.98 E-value=0.0066 Score=57.35 Aligned_cols=39 Identities=21% Similarity=0.484 Sum_probs=34.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeec
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYE 70 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYk 70 (321)
.+.-++|+|++|+||||++.+|.++ |..+|+-|..-+++
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~~~i~~ 181 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR-GHRLVADDNVEIRE 181 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEEEEE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc-CCceecCCeEEEEE
Confidence 4678999999999999999999986 88899888887765
No 282
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.97 E-value=0.0035 Score=60.88 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||.+.|+.-+
T Consensus 44 i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 44 ISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 5688999999999999999999999754
No 283
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.91 E-value=0.0036 Score=58.42 Aligned_cols=25 Identities=44% Similarity=0.537 Sum_probs=22.4
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
+..++|.||+|||||.|+..+|..+
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999754
No 284
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.90 E-value=0.0068 Score=52.33 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC----CCEEEecCc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF----PAEIINSDK 65 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l----~~eiIsaDs 65 (321)
+.+.|+|+|++|||||||...|+..+ ...+|..|.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~ 67 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDV 67 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCC
Confidence 45789999999999999999999874 234555553
No 285
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=95.87 E-value=0.0049 Score=55.97 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=28.6
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCCEEEecC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPAEIINSD 64 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaD 64 (321)
.+|+|+|+.||||||+|..|++++|..+++..
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~ 33 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLA 33 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecC
Confidence 58999999999999999999999998876644
No 286
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.85 E-value=0.0046 Score=54.05 Aligned_cols=27 Identities=26% Similarity=0.249 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.++++++++||+||||||.+..++.++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 356899999999999999999999886
No 287
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.85 E-value=0.0032 Score=58.26 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=23.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCCC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFPA 58 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~~ 58 (321)
.-++|.||+|||||++|+.+++.++.
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPE 71 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred ceEEEECCCCccHHHHHHHHHHhCcc
Confidence 34999999999999999999998864
No 288
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.82 E-value=0.005 Score=51.29 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=21.8
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
+.+.+|+||+|||||+|..+|.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999998887654
No 289
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.80 E-value=0.0048 Score=60.59 Aligned_cols=35 Identities=29% Similarity=0.582 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC-----CCEEEecCc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF-----PAEIINSDK 65 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l-----~~eiIsaDs 65 (321)
++.+|+|+|++|+||||++..||..+ ..-++++|.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 45789999999999999999999875 356888885
No 290
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.78 E-value=0.0051 Score=58.99 Aligned_cols=30 Identities=13% Similarity=0.372 Sum_probs=26.8
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
++.+++.++.|.||+|||||||+..++...
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467788999999999999999999998763
No 291
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.77 E-value=0.0043 Score=61.43 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
...+.+++|+||+|||||||.+.|+.-+
T Consensus 135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 5678999999999999999999999865
No 292
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.75 E-value=0.0047 Score=57.56 Aligned_cols=28 Identities=18% Similarity=0.364 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPA 58 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~ 58 (321)
.+..++|.||+|+|||+++..+|+.+++
T Consensus 37 ~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 37 IHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3567899999999999999999998754
No 293
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.72 E-value=0.0069 Score=56.23 Aligned_cols=26 Identities=23% Similarity=0.523 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
++.+++|+|++|+||||++..||..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999999999765
No 294
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.71 E-value=0.0052 Score=55.14 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.++.+++++||+||||||++..++.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 356899999999999999999999876
No 295
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.66 E-value=0.0055 Score=63.76 Aligned_cols=36 Identities=19% Similarity=0.448 Sum_probs=28.1
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC----------CCEEEecCc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF----------PAEIINSDK 65 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l----------~~eiIsaDs 65 (321)
..+.-++|.||+|||||++|..||+.+ +..++..|.
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 445678999999999999999999986 556665554
No 296
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.65 E-value=0.0099 Score=52.78 Aligned_cols=35 Identities=20% Similarity=0.488 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC----CCEEEecCc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF----PAEIINSDK 65 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l----~~eiIsaDs 65 (321)
+..+++++|..|+||||++..||..+ ..-+|+.|.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~ 51 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT 51 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 56789999999999999999999543 455788885
No 297
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.64 E-value=0.0044 Score=57.62 Aligned_cols=22 Identities=32% Similarity=0.594 Sum_probs=20.6
Q ss_pred EEEEcCCcccHHHHHHHHHhhC
Q 020775 35 LILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 35 IvI~GpTGSGKStLa~~LA~~l 56 (321)
++|+||+|+||||++..||+.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999954
No 298
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=95.63 E-value=0.0063 Score=55.79 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=28.9
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCc
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPAEIINSDK 65 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs 65 (321)
+++++|.||.|+|||+|+..+++..+..+++++.
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~~ 64 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRE 64 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHSSEEEEEHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHcCcEEEEeec
Confidence 3799999999999999999999998755666543
No 299
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.61 E-value=0.0095 Score=56.31 Aligned_cols=29 Identities=21% Similarity=0.251 Sum_probs=26.3
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
++.+++.++.|+||+|||||+|+..+|..
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45778899999999999999999999986
No 300
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=95.61 E-value=0.0096 Score=56.30 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=24.9
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 4678899999999999999999998654
No 301
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.61 E-value=0.0049 Score=57.60 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=21.6
Q ss_pred EEEEcCCcccHHHHHHHHHhhCC
Q 020775 35 LILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 35 IvI~GpTGSGKStLa~~LA~~l~ 57 (321)
+++.||+|+||||++..+|+.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999999864
No 302
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.59 E-value=0.006 Score=55.98 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.1
Q ss_pred EEEEEcCCcccHHHHHHHHHhhC
Q 020775 34 VLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.++|+||+|+|||||...|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999865
No 303
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.58 E-value=0.0055 Score=59.60 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=24.9
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHh
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMAT 54 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~ 54 (321)
++..++.++.|+||+|||||||+..|+-
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 5577889999999999999999998764
No 304
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.58 E-value=0.008 Score=56.21 Aligned_cols=30 Identities=17% Similarity=0.367 Sum_probs=26.4
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
++.+++.++.|+||+|||||+|+..+|...
T Consensus 102 GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 102 GGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 456788999999999999999999999763
No 305
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.56 E-value=0.006 Score=61.74 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=26.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.+++..++|+||+|||||||...|+.-+.
T Consensus 366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 366 IPAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp ECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 56889999999999999999999998763
No 306
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.56 E-value=0.0054 Score=60.02 Aligned_cols=25 Identities=24% Similarity=0.408 Sum_probs=22.9
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
+..++|.||+|+|||+|+..++..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999999876
No 307
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.55 E-value=0.0063 Score=61.57 Aligned_cols=28 Identities=25% Similarity=0.433 Sum_probs=25.7
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.+++..++|+||+|||||||...|+.-+
T Consensus 366 i~~G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 366 IPQGKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 5678899999999999999999999875
No 308
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.54 E-value=0.0078 Score=52.17 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=26.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC----CCEEEecC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF----PAEIINSD 64 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l----~~eiIsaD 64 (321)
+...|+|+|.+|||||||...|+..+ ...+|..|
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d 74 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGD 74 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECC
Confidence 46788999999999999999999874 23455544
No 309
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=95.54 E-value=0.0037 Score=53.37 Aligned_cols=27 Identities=15% Similarity=0.185 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.++..|+|+|++|+|||||...|+...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 466789999999999999999987543
No 310
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.53 E-value=0.0074 Score=62.63 Aligned_cols=31 Identities=23% Similarity=0.587 Sum_probs=27.5
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEecC
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIINSD 64 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIsaD 64 (321)
.++|.||||||||++|+.||+.++..++..|
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~ 520 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFD 520 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEEe
Confidence 6899999999999999999999987776554
No 311
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.53 E-value=0.0065 Score=61.25 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.++.+++|+||+|||||||.+.|+..+
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 678899999999999999999999865
No 312
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.52 E-value=0.01 Score=55.12 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=28.0
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC---C--CEEEecCcc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF---P--AEIINSDKI 66 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l---~--~eiIsaDs~ 66 (321)
..+..|+|.||||||||++|..++... + ...+|+.++
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL 64 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence 345678899999999999999999854 2 345665543
No 313
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.50 E-value=0.011 Score=56.06 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=27.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC-----CCEEEecC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF-----PAEIINSD 64 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l-----~~eiIsaD 64 (321)
...+|+|+|++|||||||...|+..+ ...|+..|
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~d 111 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVD 111 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeec
Confidence 46799999999999999999999753 23456655
No 314
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.47 E-value=0.0058 Score=56.52 Aligned_cols=25 Identities=20% Similarity=0.457 Sum_probs=22.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
+.++|.||+|+|||+++..+|+.++
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3489999999999999999999864
No 315
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.47 E-value=0.0078 Score=57.30 Aligned_cols=29 Identities=14% Similarity=0.391 Sum_probs=25.8
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
++.+++.++.|.||+|||||||+..++..
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35678899999999999999999999865
No 316
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.44 E-value=0.0077 Score=60.64 Aligned_cols=28 Identities=29% Similarity=0.375 Sum_probs=25.4
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||.+.|+..+
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678999999999999999999999865
No 317
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.42 E-value=0.0076 Score=54.87 Aligned_cols=26 Identities=23% Similarity=0.439 Sum_probs=22.8
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.+.++|.||+|+|||+++..+++.+.
T Consensus 46 ~~~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 46 MPHLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhc
Confidence 33599999999999999999999863
No 318
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.42 E-value=0.011 Score=55.74 Aligned_cols=39 Identities=26% Similarity=0.453 Sum_probs=33.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeec
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYE 70 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYk 70 (321)
.+.-++|+|++|+||||+|.+|.+ .|..+|+=|..-+++
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~v~i~~ 184 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAIEIYR 184 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEEEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCEEEEEE
Confidence 467799999999999999999986 478888888877765
No 319
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.40 E-value=0.0082 Score=51.06 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.5
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..|+|+|++|||||||...|+...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 478999999999999999999753
No 320
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.40 E-value=0.0064 Score=61.81 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=26.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.+++..++|+||+|||||||...|+.-+.
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 56889999999999999999999998764
No 321
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.39 E-value=0.0082 Score=55.89 Aligned_cols=34 Identities=26% Similarity=0.469 Sum_probs=27.6
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhC---C--CEEEecCc
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRF---P--AEIINSDK 65 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l---~--~eiIsaDs 65 (321)
+.+++++|++|+||||++..||..+ + .-++.+|-
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 7899999999999999999999765 3 34566663
No 322
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.38 E-value=0.0098 Score=55.50 Aligned_cols=29 Identities=10% Similarity=0.303 Sum_probs=26.3
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
++..++.+++|+|++|+|||+|+..+|..
T Consensus 63 gGl~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 63 YGYKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp SSBCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 55778899999999999999999999975
No 323
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.37 E-value=0.0099 Score=62.80 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=33.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKI 66 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~ 66 (321)
...++-+++.||+|||||.+|+++|..++..+++.+.-
T Consensus 508 ~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~ 545 (806)
T 3cf2_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 545 (806)
T ss_dssp CCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHH
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccc
Confidence 44566789999999999999999999999999887653
No 324
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.36 E-value=0.012 Score=57.84 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=29.5
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC------CCEEEecCc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF------PAEIINSDK 65 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l------~~eiIsaDs 65 (321)
.++.+|+++|++|+||||++..||..+ ..-+|.+|.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 356799999999999999999999554 345788885
No 325
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.32 E-value=0.013 Score=49.41 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.6
Q ss_pred cEEEEEcCCcccHHHHHHHHHhh
Q 020775 33 KVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
.-|+|+|++|+|||||...|...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 326
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.32 E-value=0.0086 Score=51.00 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.0
Q ss_pred cEEEEEcCCcccHHHHHHHHHhh
Q 020775 33 KVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..|+|+|++|+|||||...|+..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999975
No 327
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.30 E-value=0.0066 Score=61.63 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=26.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.+++.+++|+||+|||||||...|+.-+.
T Consensus 367 i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 367 IPSGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp ECTTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 57889999999999999999999998763
No 328
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.29 E-value=0.011 Score=57.93 Aligned_cols=35 Identities=20% Similarity=0.459 Sum_probs=28.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC---C--CEEEecCc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF---P--AEIINSDK 65 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l---~--~eiIsaDs 65 (321)
++.+|+|+|++||||||++..||..+ + .-++.+|-
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 57799999999999999999999765 3 34677774
No 329
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.28 E-value=0.0053 Score=62.13 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=26.1
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.+++..++|+||+|||||||...|+..+.
T Consensus 364 i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 364 IEKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp ECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 57889999999999999999999998764
No 330
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.28 E-value=0.0079 Score=54.57 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=21.5
Q ss_pred EEEEEcCCcccHHHHHHHHHhhC
Q 020775 34 VLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.++|.||+|+|||+++..+++.+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHH
T ss_pred eEEEECcCCcCHHHHHHHHHHHh
Confidence 48999999999999999999986
No 331
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.24 E-value=0.0096 Score=49.12 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=21.2
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
...|+|+|++|+|||||...|+..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999864
No 332
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=95.24 E-value=0.014 Score=54.97 Aligned_cols=38 Identities=21% Similarity=0.223 Sum_probs=30.1
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC---C--CEEEecCcc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF---P--AEIINSDKI 66 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l---~--~eiIsaDs~ 66 (321)
..+..+|+|+|++|+||||+...|+..+ + ..+++.|-.
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 4567899999999999999999998654 2 356776653
No 333
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.22 E-value=0.013 Score=58.72 Aligned_cols=36 Identities=25% Similarity=0.497 Sum_probs=28.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC-----CCEEEecCc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF-----PAEIINSDK 65 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l-----~~eiIsaDs 65 (321)
.++.+|+|+|++||||||++..||..+ ..-+|++|.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 356799999999999999999999654 345788885
No 334
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.20 E-value=0.0068 Score=61.55 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=26.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.+++..++|+||+|||||||...|+..+.
T Consensus 366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 366 VKPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp ECTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 57889999999999999999999998764
No 335
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.19 E-value=0.0093 Score=55.37 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=26.0
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
++.+++.++.|.||+|||||+|+..+|..
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45678899999999999999999999975
No 336
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.18 E-value=0.0085 Score=56.97 Aligned_cols=29 Identities=21% Similarity=0.367 Sum_probs=25.4
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
++.+++.+++|.||+|+|||+||..+|..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 45566788999999999999999999976
No 337
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.17 E-value=0.011 Score=47.60 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.2
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
+-|+|+|++|+|||||...|....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999998764
No 338
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.17 E-value=0.014 Score=47.98 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
++...|+|+|++|+|||||...|...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999764
No 339
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.15 E-value=0.011 Score=54.92 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.+.+++|+||+|+|||||...|+ ...
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 56899999999999999999999 653
No 340
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.14 E-value=0.013 Score=53.99 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
++..-++|.||+|||||.++..||..++
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4456799999999999999999999753
No 341
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.14 E-value=0.0092 Score=54.21 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.9
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
+.++|.||+|+|||+++..+++.+
T Consensus 43 ~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHHh
Confidence 349999999999999999999986
No 342
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.13 E-value=0.0084 Score=60.45 Aligned_cols=27 Identities=15% Similarity=0.429 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.++.+++|+||+|||||||.+.|+..+
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 578899999999999999999999865
No 343
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.11 E-value=0.011 Score=49.23 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
+...|+|+|++|+|||||...|+..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999864
No 344
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.11 E-value=0.014 Score=49.00 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.+...|+|+|++|+|||||...|....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998764
No 345
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.10 E-value=0.011 Score=54.30 Aligned_cols=33 Identities=18% Similarity=0.205 Sum_probs=27.1
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCC--CEEEecCc
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFP--AEIINSDK 65 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~--~eiIsaDs 65 (321)
++++|.||.|+|||+|+..+++..+ ..++++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 6999999999999999999998764 34566543
No 346
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.09 E-value=0.011 Score=60.42 Aligned_cols=28 Identities=32% Similarity=0.355 Sum_probs=25.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||...|+..+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 3568899999999999999999999865
No 347
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.08 E-value=0.013 Score=58.52 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=23.8
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCC
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPA 58 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~ 58 (321)
+.-++|.||+|+|||+||..||+.++.
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHhh
Confidence 457899999999999999999998853
No 348
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.08 E-value=0.0045 Score=65.26 Aligned_cols=36 Identities=25% Similarity=0.394 Sum_probs=30.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCc
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDK 65 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs 65 (321)
..+..+++.||+|||||+||+.||..++..++..+.
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~ 544 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 544 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCC
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 456779999999999999999999998877665543
No 349
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.04 E-value=0.01 Score=59.75 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.++.+++|+||+|||||||.+.|+..+
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999999865
No 350
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=95.03 E-value=0.011 Score=60.50 Aligned_cols=28 Identities=25% Similarity=0.358 Sum_probs=25.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++.+++|+||+|||||||.+.|+..+
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 4678899999999999999999999865
No 351
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.02 E-value=0.014 Score=57.19 Aligned_cols=30 Identities=20% Similarity=0.427 Sum_probs=26.5
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
++..++.+++|+|++|+|||+|+..+|...
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 457788999999999999999999998753
No 352
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.00 E-value=0.016 Score=60.05 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..+..++|+||+|||||+++..||+.+
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 346678999999999999999999986
No 353
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.98 E-value=0.012 Score=59.80 Aligned_cols=29 Identities=38% Similarity=0.654 Sum_probs=25.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
...+..++|+||+|||||||++.||..++
T Consensus 57 i~~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 57 ANQKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 34567899999999999999999999875
No 354
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=94.98 E-value=0.011 Score=58.05 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=23.6
Q ss_pred cCCCcE--EEEEcCCcccHHHHHHHHHhh
Q 020775 29 RQKEKV--LILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 29 ~~~~~l--IvI~GpTGSGKStLa~~LA~~ 55 (321)
..++.+ ++|+||+|||||||...|+..
T Consensus 37 i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 37 VSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp CC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred ecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 567778 999999999999999999876
No 355
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.98 E-value=0.012 Score=56.16 Aligned_cols=37 Identities=14% Similarity=0.350 Sum_probs=29.7
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhhC-----CCEEEec
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATRF-----PAEIINS 63 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~l-----~~eiIsa 63 (321)
++.+++.++.|.|++|||||+||..+|... .+-+|++
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 456788999999999999999999998753 2345665
No 356
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.97 E-value=0.013 Score=54.39 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.+.+++|+||+|||||||...|+....
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred cCCeEEEECCCCCcHHHHHHHhccccc
Confidence 567999999999999999999997653
No 357
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=94.96 E-value=0.01 Score=51.80 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=23.4
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCCC
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFPA 58 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~~ 58 (321)
+.+.+|+||+||||||+..+|.-.+.+
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 569999999999999999998876654
No 358
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.95 E-value=0.011 Score=60.47 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.++.+++|+||+|||||||.+.|+..+
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999999865
No 359
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.95 E-value=0.013 Score=47.06 Aligned_cols=23 Identities=39% Similarity=0.657 Sum_probs=20.5
Q ss_pred cEEEEEcCCcccHHHHHHHHHhh
Q 020775 33 KVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
.-|+++|++|+|||||...|...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999865
No 360
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.93 E-value=0.012 Score=58.84 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=22.7
Q ss_pred ccCCCcEEEEEcCCcccHHHHHHHH
Q 020775 28 RRQKEKVLILMGATGTGKSRLSIDM 52 (321)
Q Consensus 28 ~~~~~~lIvI~GpTGSGKStLa~~L 52 (321)
..+++.+++|+||+|||||||+..+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 4678899999999999999999994
No 361
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.91 E-value=0.016 Score=49.68 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
+...|+|+|++|+|||||...|....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45679999999999999999999764
No 362
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=94.91 E-value=0.014 Score=55.75 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=20.2
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
+.+.+|+||||||||||..+|+-.
T Consensus 23 ~g~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 348889999999999998887744
No 363
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.89 E-value=0.018 Score=46.79 Aligned_cols=26 Identities=19% Similarity=0.502 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
.+..-|+|+|++|+|||||...|...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999754
No 364
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.88 E-value=0.02 Score=55.00 Aligned_cols=39 Identities=13% Similarity=0.365 Sum_probs=30.9
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhhC-----CCEEEecCc
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATRF-----PAEIINSDK 65 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~l-----~~eiIsaDs 65 (321)
++.+++.++.|.||+|||||+|+..+|... .+-+|+++.
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 356788999999999999999999998753 345666653
No 365
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.87 E-value=0.014 Score=49.47 Aligned_cols=27 Identities=22% Similarity=0.394 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
+..-|+|+|.+|+|||+|...+...+.
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 456799999999999999988877653
No 366
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.87 E-value=0.014 Score=47.25 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=21.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..-|+|+|++|+|||||...|...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999864
No 367
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.86 E-value=0.012 Score=65.26 Aligned_cols=29 Identities=24% Similarity=0.400 Sum_probs=26.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.+++..|+|+||||||||||+..|.+-+.
T Consensus 1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1102 VEPGQTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp ECTTCEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHhcCcc
Confidence 67889999999999999999999998763
No 368
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.86 E-value=0.014 Score=54.70 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCCE
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPAE 59 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~e 59 (321)
.+..+++.||+|+|||++|..+|+.+.++
T Consensus 23 ~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 23 GHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp CCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred cceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 45679999999999999999999987653
No 369
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.85 E-value=0.015 Score=48.53 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
++..|+|+|++|+|||||...|+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999865
No 370
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.85 E-value=0.011 Score=49.56 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=20.0
Q ss_pred EEEEEcCCcccHHHHHHHHHhh
Q 020775 34 VLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~ 55 (321)
-|+|+|++|+|||||...++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999873
No 371
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.84 E-value=0.015 Score=51.39 Aligned_cols=22 Identities=36% Similarity=0.589 Sum_probs=18.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHH
Q 020775 31 KEKVLILMGATGTGKSRLSIDM 52 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~L 52 (321)
.+..++++||||||||++...+
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHH
T ss_pred cCCEEEEEeCCCCCcHHhHHHH
Confidence 4679999999999999865544
No 372
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.84 E-value=0.015 Score=55.88 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.+.+++|+||+|+|||||...|+....
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 567999999999999999999997543
No 373
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.83 E-value=0.015 Score=58.08 Aligned_cols=27 Identities=30% Similarity=0.368 Sum_probs=23.7
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..+ .+++|+||+|||||||...|+.-+
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 345 899999999999999999999754
No 374
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.79 E-value=0.015 Score=55.27 Aligned_cols=29 Identities=17% Similarity=0.140 Sum_probs=26.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++.++.|+||+|+|||||...|+....
T Consensus 68 i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 68 CGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45788999999999999999999999875
No 375
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.77 E-value=0.018 Score=56.59 Aligned_cols=29 Identities=28% Similarity=0.202 Sum_probs=26.2
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..++..++|+||+|||||||...|+....
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 45788999999999999999999999874
No 376
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.73 E-value=0.019 Score=58.62 Aligned_cols=26 Identities=23% Similarity=0.517 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.+.+.+|.||+|||||+.+..+...+
T Consensus 204 ~~~~~lI~GPPGTGKT~ti~~~I~~l 229 (646)
T 4b3f_X 204 QKELAIIHGPPGTGKTTTVVEIILQA 229 (646)
T ss_dssp CSSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999877766543
No 377
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.72 E-value=0.02 Score=47.46 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..-|+|+|++|+|||||...|...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 378
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.71 E-value=0.015 Score=55.56 Aligned_cols=35 Identities=20% Similarity=0.221 Sum_probs=27.2
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhh---CCCEEEecCc
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATR---FPAEIINSDK 65 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~---l~~eiIsaDs 65 (321)
....++|+||||||||++...|+.. .++.++-.|.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 4667899999999999999988865 3555555554
No 379
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.71 E-value=0.0092 Score=56.06 Aligned_cols=26 Identities=27% Similarity=0.535 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
++.+++|+||+|+|||||...|+...
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccc
Confidence 57899999999999999999998654
No 380
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.71 E-value=0.018 Score=56.16 Aligned_cols=29 Identities=14% Similarity=0.258 Sum_probs=26.0
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
++..++.+++|+|++|+|||+|+..+|..
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 55678899999999999999999999875
No 381
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.69 E-value=0.016 Score=59.25 Aligned_cols=27 Identities=33% Similarity=0.597 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.++.+++|+||+|||||||...|+..+
T Consensus 376 ~~GEiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 376 SDSEILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp CTTCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCC
Confidence 344789999999999999999999865
No 382
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.69 E-value=0.017 Score=46.46 Aligned_cols=23 Identities=30% Similarity=0.624 Sum_probs=20.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHhh
Q 020775 33 KVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
.-|+|+|++|+|||||...|...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998864
No 383
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.68 E-value=0.014 Score=54.92 Aligned_cols=26 Identities=27% Similarity=0.439 Sum_probs=23.0
Q ss_pred CCcEEEE--EcCCcccHHHHHHHHHhhC
Q 020775 31 KEKVLIL--MGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 31 ~~~lIvI--~GpTGSGKStLa~~LA~~l 56 (321)
.+..++| .||+|+|||+|+..+++.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 5668888 9999999999999999875
No 384
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.67 E-value=0.016 Score=56.55 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=21.9
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.+++|+||+|||||||...|+...
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 399999999999999999999854
No 385
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.66 E-value=0.019 Score=48.05 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
....|+|+|++|+|||||...|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999865
No 386
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.66 E-value=0.02 Score=46.12 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..-|+|+|++|+|||||...|...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 387
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.62 E-value=0.018 Score=46.59 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=20.2
Q ss_pred cEEEEEcCCcccHHHHHHHHHhh
Q 020775 33 KVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
.-|+|+|++|+|||||...|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999854
No 388
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=94.62 E-value=0.012 Score=56.12 Aligned_cols=29 Identities=21% Similarity=0.213 Sum_probs=24.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPA 58 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~ 58 (321)
...+ +++|+||||||||||...|+--+++
T Consensus 58 ~~~G-~~~lvG~NGaGKStLl~aI~~l~~~ 86 (415)
T 4aby_A 58 LGGG-FCAFTGETGAGKSIIVDALGLLLGG 86 (415)
T ss_dssp CCSS-EEEEEESHHHHHHHHTHHHHHHTTC
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3455 9999999999999999999877664
No 389
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.61 E-value=0.018 Score=46.70 Aligned_cols=23 Identities=30% Similarity=0.458 Sum_probs=20.6
Q ss_pred cEEEEEcCCcccHHHHHHHHHhh
Q 020775 33 KVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
.-|+|+|++|+|||||...|...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999865
No 390
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.60 E-value=0.017 Score=46.78 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHhh
Q 020775 33 KVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
.-|+|+|++|+|||||...|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 391
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.58 E-value=0.019 Score=53.98 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHh
Q 020775 31 KEKVLILMGATGTGKSRLSIDMAT 54 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~ 54 (321)
.+.+.+|+||||||||+|..+|.-
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 456889999999999999988754
No 392
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.58 E-value=0.018 Score=47.21 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=21.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..-|+|+|++|+|||||...|...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356899999999999999998864
No 393
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.58 E-value=0.021 Score=48.00 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.1
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..-|+|+|++|+|||+|...|...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 456899999999999999999864
No 394
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.55 E-value=0.021 Score=47.47 Aligned_cols=26 Identities=23% Similarity=0.278 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
...-|+|+|++|+|||||...|...-
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 34578999999999999999998653
No 395
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.54 E-value=0.017 Score=52.41 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.+.+.+++||.||||||.+..++.++
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~ 43 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRF 43 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHH
Confidence 57899999999999999999998775
No 396
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.51 E-value=0.019 Score=46.52 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHhh
Q 020775 33 KVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
.-|+|+|++|+|||||...|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 397
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.47 E-value=0.017 Score=61.13 Aligned_cols=24 Identities=29% Similarity=0.636 Sum_probs=22.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
..++|+||||||||++|+.|++.+
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999999987
No 398
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=94.45 E-value=0.0038 Score=56.13 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=22.0
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.+++|+||||||||||...|+-.+.
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcccc
Confidence 4678999999999999999998754
No 399
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=94.40 E-value=0.029 Score=49.68 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.+++|+|+|-+||||+++|..|.+.++
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g 36 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLG 36 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcC
Confidence 457999999999999999999998775
No 400
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.38 E-value=0.022 Score=46.74 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=20.5
Q ss_pred cEEEEEcCCcccHHHHHHHHHhh
Q 020775 33 KVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
.-|+|+|++|+|||||...|...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 401
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.37 E-value=0.022 Score=46.30 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=20.9
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..-|+|+|++|+|||||...|...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346899999999999999999864
No 402
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.36 E-value=0.022 Score=48.55 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=20.4
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..-|+|+|++|+|||||...|...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999999753
No 403
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.36 E-value=0.023 Score=45.92 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=20.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHhh
Q 020775 33 KVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
.-|+|+|++|+|||||...|...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45899999999999999999864
No 404
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.34 E-value=0.022 Score=46.32 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=19.6
Q ss_pred EEEEEcCCcccHHHHHHHHHhh
Q 020775 34 VLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~ 55 (321)
-|+|+|++|+|||||...|...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4899999999999999999753
No 405
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.34 E-value=0.019 Score=57.25 Aligned_cols=30 Identities=30% Similarity=0.409 Sum_probs=26.0
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
....++.+++|+||+|||||||+..++...
T Consensus 276 g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 276 GGFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SSEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 446788999999999999999999998653
No 406
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.34 E-value=0.023 Score=50.80 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
.++.+.+++||.||||||.+..++.++
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 457899999999999999999999876
No 407
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.32 E-value=0.023 Score=45.89 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=20.8
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..-|+|+|++|+|||||...|...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999864
No 408
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.32 E-value=0.024 Score=46.42 Aligned_cols=25 Identities=32% Similarity=0.607 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
+..-|+|+|++|+|||||...|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999999875
No 409
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.32 E-value=0.029 Score=46.04 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=21.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..-|+|+|++|+|||+|...|...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 456899999999999999999864
No 410
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.32 E-value=0.02 Score=47.78 Aligned_cols=24 Identities=42% Similarity=0.679 Sum_probs=21.2
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..-|+|+|++|+|||||...|+..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 356899999999999999999865
No 411
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.30 E-value=0.022 Score=50.24 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
....|+|+|++|+|||||...|...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4467999999999999999999865
No 412
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.30 E-value=0.025 Score=46.18 Aligned_cols=24 Identities=29% Similarity=0.470 Sum_probs=20.9
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..-|+|+|++|+|||||...|...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 356899999999999999999854
No 413
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.25 E-value=0.019 Score=53.48 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
+.+.+|+||||||||+|..+|.--+
T Consensus 24 ~g~~~i~G~NGsGKS~ll~ai~~ll 48 (322)
T 1e69_A 24 DRVTAIVGPNGSGKSNIIDAIKWVF 48 (322)
T ss_dssp SSEEEEECCTTTCSTHHHHHHHHTS
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHh
Confidence 3499999999999999999998655
No 414
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.23 E-value=0.021 Score=63.40 Aligned_cols=29 Identities=21% Similarity=0.368 Sum_probs=26.8
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.+++..++|+||||||||||...|...+.
T Consensus 441 i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 441 VNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp ECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred ecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 67889999999999999999999998874
No 415
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.23 E-value=0.03 Score=49.10 Aligned_cols=24 Identities=21% Similarity=0.513 Sum_probs=20.4
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
+.+++|+|++|||||++|..++..
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Confidence 458899999999999999997544
No 416
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=94.23 E-value=0.03 Score=54.24 Aligned_cols=28 Identities=18% Similarity=0.353 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPA 58 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~ 58 (321)
.+.+.+|+||+|||||||...|+--++.
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 4679999999999999999999876643
No 417
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.20 E-value=0.025 Score=46.82 Aligned_cols=24 Identities=42% Similarity=0.695 Sum_probs=21.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..-|+|+|++|+|||||...|...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 418
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.19 E-value=0.029 Score=53.32 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=26.4
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
++..++.+++|+|++|+|||+|+..+|...
T Consensus 41 gGl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 41 SGFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp CSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 456788999999999999999999998763
No 419
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.18 E-value=0.024 Score=46.29 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.2
Q ss_pred cEEEEEcCCcccHHHHHHHHHhh
Q 020775 33 KVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
.-|+|+|++|+|||||...|...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999853
No 420
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=94.18 E-value=0.028 Score=55.21 Aligned_cols=30 Identities=10% Similarity=0.310 Sum_probs=26.4
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
++..++.+++|+|++|+|||+|+..+|...
T Consensus 192 gGl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 192 YGYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp SSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 456788999999999999999999998764
No 421
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.14 E-value=0.029 Score=48.25 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=21.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..-|+|+|++|+|||||...|...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 356899999999999999999864
No 422
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.13 E-value=0.028 Score=45.48 Aligned_cols=22 Identities=14% Similarity=0.398 Sum_probs=19.6
Q ss_pred EEEEEcCCcccHHHHHHHHHhh
Q 020775 34 VLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~ 55 (321)
-|+|+|++|+|||+|...+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999764
No 423
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.12 E-value=0.024 Score=45.95 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=19.4
Q ss_pred EEEEEcCCcccHHHHHHHHHhh
Q 020775 34 VLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~ 55 (321)
-|+|+|++|+|||||...|...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 5899999999999999998743
No 424
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.10 E-value=0.027 Score=46.60 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.7
Q ss_pred cEEEEEcCCcccHHHHHHHHHhh
Q 020775 33 KVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
.-|+|+|++|+|||||...|...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 425
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.06 E-value=0.028 Score=45.95 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.2
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..-|+|+|++|+|||||...|...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999865
No 426
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.05 E-value=0.027 Score=47.23 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.2
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..-|+|+|++|+|||||...|...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999874
No 427
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.03 E-value=0.026 Score=46.23 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.3
Q ss_pred cEEEEEcCCcccHHHHHHHHHhh
Q 020775 33 KVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
.-|+|+|++|+|||||...|...
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999998753
No 428
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.02 E-value=0.035 Score=46.10 Aligned_cols=24 Identities=21% Similarity=0.457 Sum_probs=21.3
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..-|+|+|++|+|||||...|...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999875
No 429
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.01 E-value=0.024 Score=47.00 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=19.8
Q ss_pred EEEEEcCCcccHHHHHHHHHhh
Q 020775 34 VLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~ 55 (321)
-|+|+|++|+|||||...|...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999864
No 430
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.01 E-value=0.029 Score=46.21 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.1
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..-|+|+|++|+|||||...|...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456899999999999999999864
No 431
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.99 E-value=0.024 Score=61.07 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=23.9
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHh
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMAT 54 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~ 54 (321)
..++.+++|+||+|||||||.+.|+.
T Consensus 458 I~~Ge~v~LiGpNGsGKSTLLk~Lag 483 (986)
T 2iw3_A 458 LKRARRYGICGPNGCGKSTLMRAIAN 483 (986)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 56788999999999999999999994
No 432
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.98 E-value=0.031 Score=46.99 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
...-|+|+|++|+|||||...|...-
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 34578999999999999999998753
No 433
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.98 E-value=0.028 Score=46.52 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=20.9
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..-|+|+|++|+|||||...|...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 356899999999999999999864
No 434
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=93.97 E-value=0.017 Score=61.86 Aligned_cols=23 Identities=35% Similarity=0.775 Sum_probs=20.9
Q ss_pred cCCCcEEEEEcCCcccHHHHHHH
Q 020775 29 RQKEKVLILMGATGTGKSRLSID 51 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~ 51 (321)
+++.++++|+|++|||||+||-+
T Consensus 21 ip~~~l~v~tG~SGSGKSsLafd 43 (916)
T 3pih_A 21 IPKNRLVVITGVSGSGKSSLAMD 43 (916)
T ss_dssp EETTSEEEEEESTTSSSHHHHTT
T ss_pred cCCCcEEEEECCCCCcHHHHHHH
Confidence 57889999999999999999854
No 435
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.97 E-value=0.034 Score=46.24 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=22.2
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 32 EKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
..-|+|+|++|+|||+|...|...+.
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 34689999999999999988887764
No 436
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=93.91 E-value=0.02 Score=61.64 Aligned_cols=23 Identities=30% Similarity=0.715 Sum_probs=21.1
Q ss_pred cCCCcEEEEEcCCcccHHHHHHH
Q 020775 29 RQKEKVLILMGATGTGKSRLSID 51 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~ 51 (321)
+++.+++||+|++|||||+||-+
T Consensus 43 iP~~~lvv~tG~SGSGKSSLafd 65 (993)
T 2ygr_A 43 LPRDALIVFTGLSGSGKSSLAFD 65 (993)
T ss_dssp EESSSEEEEEESTTSSHHHHHTT
T ss_pred ccCCCEEEEECCCCCcHHHHHHH
Confidence 67889999999999999999865
No 437
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.91 E-value=0.033 Score=46.89 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
+.--|+|+|++|+|||+|...+...
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999888764
No 438
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.89 E-value=0.038 Score=49.19 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=21.9
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.-++|+||||+|||.++..++...+
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~~ 133 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINELS 133 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcC
Confidence 3488999999999999999998864
No 439
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=93.87 E-value=0.021 Score=61.38 Aligned_cols=23 Identities=39% Similarity=0.728 Sum_probs=21.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHH
Q 020775 29 RQKEKVLILMGATGTGKSRLSID 51 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~ 51 (321)
+++.+++||+|++|||||+||-+
T Consensus 41 iP~~~lvv~tG~SGSGKSSLafd 63 (972)
T 2r6f_A 41 IPRGKLVVLTGLSGSGKSSLAFD 63 (972)
T ss_dssp EETTSEEEEEESTTSSHHHHHTT
T ss_pred ccCCcEEEEECCCCCCHHHHHHH
Confidence 67889999999999999999864
No 440
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.87 E-value=0.031 Score=45.94 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=20.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHhh
Q 020775 33 KVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
.-|+|+|++|+|||||...|...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 441
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=93.84 E-value=0.022 Score=60.46 Aligned_cols=23 Identities=26% Similarity=0.655 Sum_probs=21.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHH
Q 020775 29 RQKEKVLILMGATGTGKSRLSID 51 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~ 51 (321)
+++.++++|+|++||||||||.+
T Consensus 33 iP~~~l~viTGvSGSGKSSLafd 55 (842)
T 2vf7_A 33 VPRDALVVFTGVSGSGKSSLAFG 55 (842)
T ss_dssp EESSSEEEEESSTTSSHHHHHTT
T ss_pred ecCCCEEEEECCCCCCHHHHHHH
Confidence 67899999999999999999864
No 442
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=93.81 E-value=0.032 Score=53.02 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHh
Q 020775 31 KEKVLILMGATGTGKSRLSIDMAT 54 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~ 54 (321)
.+.+.+|+|+||+|||+|.-+|.-
T Consensus 24 ~~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 24 EKGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999888764
No 443
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=93.81 E-value=0.025 Score=52.42 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.0
Q ss_pred EEEEEcCCcccHHHHHHHHHhh
Q 020775 34 VLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~ 55 (321)
-|+|+||+|+|||||...|+..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4699999999999999998753
No 444
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.81 E-value=0.027 Score=46.54 Aligned_cols=24 Identities=25% Similarity=0.547 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHh
Q 020775 31 KEKVLILMGATGTGKSRLSIDMAT 54 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~ 54 (321)
+..-|+|+|++|+|||||...|..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 566899999999999999988763
No 445
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.80 E-value=0.033 Score=45.89 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=20.7
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..-|+|+|++|+|||||...|...
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999854
No 446
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.80 E-value=0.032 Score=46.60 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..-|+|+|++|+|||||...|...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999865
No 447
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.79 E-value=0.033 Score=46.94 Aligned_cols=24 Identities=29% Similarity=0.540 Sum_probs=21.1
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..-|+|+|++|+|||||...|...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999999864
No 448
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=93.78 E-value=0.037 Score=46.90 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=21.6
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
.+..-|+|+|++|+|||||...|...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 34567999999999999999999865
No 449
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.78 E-value=0.023 Score=58.35 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=21.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHH
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDM 52 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~L 52 (321)
.+++.+++|+||+|||||||...+
T Consensus 345 I~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 345 IPLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EETTSEEEEECSTTSSHHHHHTTT
T ss_pred ecCCCEEEEEeeCCCCHHHHHHHH
Confidence 567899999999999999998654
No 450
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.76 E-value=0.035 Score=52.71 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=24.0
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
++.+++ ++.|.||+|||||||+..++..
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 567777 8999999999999999888754
No 451
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.74 E-value=0.029 Score=48.18 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
....|+|+|++|+|||||...|...
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3567899999999999999999875
No 452
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.73 E-value=0.035 Score=45.61 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=21.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..-|+|+|++|+|||||...|...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 453
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.73 E-value=0.035 Score=46.14 Aligned_cols=26 Identities=19% Similarity=0.431 Sum_probs=21.9
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
++..-|+|+|++|+|||||...+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 35567999999999999999998864
No 454
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.72 E-value=0.037 Score=47.27 Aligned_cols=25 Identities=20% Similarity=0.474 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
+...|+|+|++|+|||+|...|...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999865
No 455
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.71 E-value=0.037 Score=46.78 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
+..-|+|+|++|+|||||...+...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4457899999999999999999864
No 456
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=93.70 E-value=0.026 Score=62.38 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=26.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.+++..++|+||||||||||...|+..+.
T Consensus 413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 413 VKSGQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp ECTTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 57889999999999999999999998763
No 457
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=93.70 E-value=0.034 Score=58.68 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..+.+++|+||+||||||+.+.++.-
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 45689999999999999999998863
No 458
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=93.70 E-value=0.16 Score=50.76 Aligned_cols=114 Identities=16% Similarity=0.139 Sum_probs=67.0
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhhHHH
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQNFCD 108 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~f~~ 108 (321)
...+.+|+|-|--||||++.+..|.+.++-.-+. -+.+.+|+.+|+.. + + |.+
T Consensus 40 ~~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~----------V~a~~~Pt~~E~~~-~--y--------------l~R 92 (500)
T 3czp_A 40 ARFPVIILINGIEGAGKGETVKLLNEWMDPRLIE----------VQSFLRPSDEELER-P--P--------------QWR 92 (500)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEE----------EEECSSCCHHHHTS-C--T--------------THH
T ss_pred CCCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCe----------EEEeCCCChhhccC-C--h--------------hhh
Confidence 3567899999999999999999999998632111 02246789988852 1 1 111
Q ss_pred HHHHHHHHHhhcCCcEEEEcCchHHHHHHhc---c-cccc-----------c-----cccCCeEEEEEeCCHHHHHHHHH
Q 020775 109 MASFSIESTLNKGKVPIIVGGSNSYIEALVD---D-EDYG-----------F-----RWKYDCCFLWVDVSMPVLRSFVS 168 (321)
Q Consensus 109 ~a~~~i~~i~~~g~~pIivGGt~~Y~~all~---g-~~~~-----------~-----r~~~~~~~i~L~~~~~~L~~RL~ 168 (321)
....+-++|.+.|.-.. .|=++++. | .+.. | ...+..+.|||+.+.++..+|+.
T Consensus 93 ----~~~~lP~~G~IvIfdRS--wYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~kRl~ 166 (500)
T 3czp_A 93 ----FWRRLPPKGRTGIFFGN--WYSQMLYARVEGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKERLK 166 (500)
T ss_dssp ----HHHHCCCTTCEEEEESC--HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHCC-
T ss_pred ----HHHhCCCCCeEEEEeCc--hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHHHHH
Confidence 22335567776655543 23333322 1 1100 0 13456789999999999999999
Q ss_pred HhHHHHH
Q 020775 169 ERVDRMV 175 (321)
Q Consensus 169 ~R~~~Ml 175 (321)
+|.+...
T Consensus 167 ~R~~~p~ 173 (500)
T 3czp_A 167 ALEKDPQ 173 (500)
T ss_dssp -------
T ss_pred HHhcCCc
Confidence 9987553
No 459
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.69 E-value=0.035 Score=54.84 Aligned_cols=30 Identities=13% Similarity=0.195 Sum_probs=26.3
Q ss_pred cccCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 27 SRRQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 27 ~~~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
++..++.+++|.|++|+|||+|+..+|...
T Consensus 237 gGl~~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 237 LGARGGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp CCCCTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cccCCCeEEEEeecCCCCchHHHHHHHHHH
Confidence 356788999999999999999999998763
No 460
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.66 E-value=0.021 Score=58.14 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=25.1
Q ss_pred EEEEEcCCcccHHHHHHHHHhhCCCEEEe
Q 020775 34 VLILMGATGTGKSRLSIDMATRFPAEIIN 62 (321)
Q Consensus 34 lIvI~GpTGSGKStLa~~LA~~l~~eiIs 62 (321)
-++++||+|+|||+||+.+|+.++..+..
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~r~~~~ 357 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAPRAVYT 357 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCSCEECC
T ss_pred ceEEECCCchHHHHHHHHHHHhCCCceec
Confidence 68999999999999999999998755443
No 461
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.66 E-value=0.034 Score=47.50 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
...-|+|+|++|+|||||...|...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcC
Confidence 3457999999999999999999864
No 462
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.66 E-value=0.035 Score=46.87 Aligned_cols=24 Identities=25% Similarity=0.475 Sum_probs=21.2
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..-|+|+|++|+|||||...|...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456899999999999999999865
No 463
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.63 E-value=0.036 Score=47.75 Aligned_cols=25 Identities=20% Similarity=0.294 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
...-|+|+|++|+|||||...|...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999875
No 464
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.60 E-value=0.037 Score=46.18 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.6
Q ss_pred cEEEEEcCCcccHHHHHHHHHhh
Q 020775 33 KVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
.-|+|+|++|+|||||...|...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 465
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=93.58 E-value=0.037 Score=45.70 Aligned_cols=24 Identities=25% Similarity=0.504 Sum_probs=20.9
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..-|+|+|++|+|||||...|...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 457899999999999999999843
No 466
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=93.56 E-value=0.039 Score=46.84 Aligned_cols=25 Identities=16% Similarity=0.391 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
+..-|+|+|++|+|||||...|...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 4567999999999999999999864
No 467
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=93.54 E-value=0.026 Score=58.04 Aligned_cols=21 Identities=38% Similarity=0.706 Sum_probs=19.2
Q ss_pred cCCCcEEEEEcCCcccHHHHH
Q 020775 29 RQKEKVLILMGATGTGKSRLS 49 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa 49 (321)
.+++.+++|+||+|||||||.
T Consensus 41 i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 41 IPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp EETTSEEEEECSTTSSHHHHH
T ss_pred ECCCCEEEEECCCCCCHHHHh
Confidence 467899999999999999996
No 468
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=93.53 E-value=0.037 Score=49.53 Aligned_cols=26 Identities=35% Similarity=0.471 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
...-|+|+|.||+|||||...|...-
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCC
Confidence 45679999999999999999998653
No 469
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=93.53 E-value=0.026 Score=60.86 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=25.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
...+.+++|+||+|||||||.+.|+..+
T Consensus 696 I~~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 696 CSLSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp EETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4577899999999999999999999875
No 470
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=93.51 E-value=0.025 Score=53.74 Aligned_cols=28 Identities=29% Similarity=0.233 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhCCC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRFPA 58 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l~~ 58 (321)
++..|+|-|+-||||||++..|++.++.
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4579999999999999999999999863
No 471
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.49 E-value=0.04 Score=46.11 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.1
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..-|+|+|++|+|||||...|...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 357899999999999999999864
No 472
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.49 E-value=0.039 Score=45.91 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
+..-|+|+|++|+|||+|...|...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999865
No 473
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.48 E-value=0.044 Score=45.82 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhhC
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
+..-|+|+|++|+|||||...|....
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCC
Confidence 45679999999999999999998653
No 474
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.48 E-value=0.047 Score=45.53 Aligned_cols=25 Identities=20% Similarity=0.468 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
+..-|+|+|++|+|||||...|...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999853
No 475
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=93.47 E-value=0.037 Score=55.15 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHh
Q 020775 31 KEKVLILMGATGTGKSRLSIDMAT 54 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~ 54 (321)
..++|+|+||.|+||||||..++.
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Confidence 468999999999999999999864
No 476
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.46 E-value=0.043 Score=47.75 Aligned_cols=25 Identities=32% Similarity=0.423 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
+..-|+|+|++|+|||||...|...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4568999999999999999999764
No 477
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.46 E-value=0.061 Score=48.49 Aligned_cols=33 Identities=18% Similarity=0.090 Sum_probs=26.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhC---C--CEEEecCc
Q 020775 33 KVLILMGATGTGKSRLSIDMATRF---P--AEIINSDK 65 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l---~--~eiIsaDs 65 (321)
..|++.|+.|+||||++..+|..+ | ..++..|.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 458999999999999999988764 3 34677775
No 478
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=93.45 E-value=0.05 Score=44.71 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
+..-|+|+|++|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456899999999999999999864
No 479
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=93.44 E-value=0.023 Score=57.93 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=21.8
Q ss_pred cEEEEEcCCcccHHHHHHHHHhhC
Q 020775 33 KVLILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~l 56 (321)
+.++|+||+|||||||...|+..+
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC
T ss_pred CeEEEECCCCChHHHHHHHHhCCC
Confidence 459999999999999999999864
No 480
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.43 E-value=0.038 Score=45.49 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=20.6
Q ss_pred cEEEEEcCCcccHHHHHHHHHhh
Q 020775 33 KVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
.-|+|+|++|+|||+|...+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999874
No 481
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.43 E-value=0.039 Score=46.46 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=21.1
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..-|+|+|++|+|||||...|...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356899999999999999999864
No 482
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=93.36 E-value=0.054 Score=50.74 Aligned_cols=37 Identities=30% Similarity=0.392 Sum_probs=29.5
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC---C--CEEEecCc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF---P--AEIINSDK 65 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l---~--~eiIsaDs 65 (321)
....++|+|+|-=|+||||++..||..| | .-+|.+|-
T Consensus 45 i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dp 86 (314)
T 3fwy_A 45 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 86 (314)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CCCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4567899999999999999999888765 3 45788883
No 483
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.35 E-value=0.043 Score=45.63 Aligned_cols=23 Identities=26% Similarity=0.579 Sum_probs=20.7
Q ss_pred cEEEEEcCCcccHHHHHHHHHhh
Q 020775 33 KVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
.-|+|+|++|+|||+|...|...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999865
No 484
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.34 E-value=0.039 Score=57.93 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=22.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
+.+++|+||+||||||+.+.++.-
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhh
Confidence 789999999999999999998863
No 485
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.34 E-value=0.047 Score=46.68 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=21.3
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
.+..-|+|+|++|+|||||...+...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 34567999999999999999999854
No 486
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=93.33 E-value=0.039 Score=61.05 Aligned_cols=29 Identities=28% Similarity=0.438 Sum_probs=26.3
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhCC
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRFP 57 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l~ 57 (321)
.+++..++|+||||||||||...|+..+.
T Consensus 1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1056 VKKGQTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp ECSSSEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 56889999999999999999999998763
No 487
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=93.33 E-value=0.046 Score=48.67 Aligned_cols=25 Identities=40% Similarity=0.559 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
+...|+|+|++|+|||||...|...
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999864
No 488
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.32 E-value=0.041 Score=46.65 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.5
Q ss_pred cEEEEEcCCcccHHHHHHHHHhh
Q 020775 33 KVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
.-|+|+|++|+|||||...|...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 489
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.31 E-value=0.054 Score=45.28 Aligned_cols=25 Identities=28% Similarity=0.538 Sum_probs=21.5
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
...-|+|+|++|+|||||...|...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcC
Confidence 3457899999999999999999863
No 490
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.27 E-value=0.042 Score=46.38 Aligned_cols=23 Identities=17% Similarity=0.403 Sum_probs=20.4
Q ss_pred cEEEEEcCCcccHHHHHHHHHhh
Q 020775 33 KVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 33 ~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
.-|+|+|++|+|||||...|...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999764
No 491
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.27 E-value=0.049 Score=49.12 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=21.3
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
...|+|+|++|+|||||...|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999865
No 492
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.24 E-value=0.054 Score=45.61 Aligned_cols=25 Identities=36% Similarity=0.579 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
+..-|+|+|++|+|||||...|...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456999999999999999999865
No 493
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=93.23 E-value=0.048 Score=52.18 Aligned_cols=23 Identities=30% Similarity=0.339 Sum_probs=20.5
Q ss_pred CcEEEEEcCCcccHHHHHHHHHh
Q 020775 32 EKVLILMGATGTGKSRLSIDMAT 54 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~ 54 (321)
+.+.+|+||+||||||+...|+-
T Consensus 26 ~g~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 26 EGVTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHH
Confidence 34999999999999999999874
No 494
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.21 E-value=0.036 Score=54.15 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.9
Q ss_pred EEEEcCCcccHHHHHHHHHhhC
Q 020775 35 LILMGATGTGKSRLSIDMATRF 56 (321)
Q Consensus 35 IvI~GpTGSGKStLa~~LA~~l 56 (321)
|+|+|++|+|||||...|+...
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 6999999999999999998653
No 495
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.20 E-value=0.046 Score=45.93 Aligned_cols=24 Identities=38% Similarity=0.661 Sum_probs=21.0
Q ss_pred CcEEEEEcCCcccHHHHHHHHHhh
Q 020775 32 EKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 32 ~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
..-|+|+|++|+|||+|...+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 356899999999999999998864
No 496
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.14 E-value=0.044 Score=58.71 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCcccHHHHHHHHHh
Q 020775 30 QKEKVLILMGATGTGKSRLSIDMAT 54 (321)
Q Consensus 30 ~~~~lIvI~GpTGSGKStLa~~LA~ 54 (321)
..+.+++|+||+|+||||+.+.++.
T Consensus 671 ~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 671 DSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp TSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHH
Confidence 4578999999999999999998874
No 497
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.10 E-value=0.049 Score=46.19 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
...-|+|+|++|+|||||...|...
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999999854
No 498
>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A
Probab=93.09 E-value=0.84 Score=43.34 Aligned_cols=119 Identities=15% Similarity=0.088 Sum_probs=59.0
Q ss_pred cEEEEEcCCcccHH-------HHHHHHHhhCCCEEEecCcceeecCccccCCCCCHHhhcCCCcccccccCCCccccHhh
Q 020775 33 KVLILMGATGTGKS-------RLSIDMATRFPAEIINSDKIQVYEGLDIVTNKITEEEQCGIPHHLLGIQHPNADFTAQN 105 (321)
Q Consensus 33 ~lIvI~GpTGSGKS-------tLa~~LA~~l~~eiIsaDs~QvYkgl~I~T~k~~~~E~~gvphhll~~~~~~~~~~~~~ 105 (321)
+-|+|+||++.|== .|--.|-++|++.|+-. +---+|..++-+..+. .+....+. .......
T Consensus 143 RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~t-----R~~~d~~~~~r~~~~~-~~~~~~~e-----~~~~~~~ 211 (337)
T 4dey_A 143 RPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT-----RVTADISLAKRSVLNN-PSKHAIIE-----RSNTRSS 211 (337)
T ss_dssp CCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEE-----EECSCGGGC-------------------------CCC
T ss_pred CceEEECCccccchhHHHHHHHHHHhhHHhcCCccceE-----eecchhhhcchhhhhc-ccchhhhc-----ccccccc
Confidence 44899999999865 58888889999876422 1123444555432221 11111111 0111112
Q ss_pred HHHHHHHHHHH---HhhcCCcEEEEcCchHHHHHHhc-ccccccccc-CCeE-EEEEeCCHHHHHHHHHHhHH
Q 020775 106 FCDMASFSIES---TLNKGKVPIIVGGSNSYIEALVD-DEDYGFRWK-YDCC-FLWVDVSMPVLRSFVSERVD 172 (321)
Q Consensus 106 f~~~a~~~i~~---i~~~g~~pIivGGt~~Y~~all~-g~~~~~r~~-~~~~-~i~L~~~~~~L~~RL~~R~~ 172 (321)
|.+ +...+++ +.+.|+.+|+.= -+. |. ..++.. .+.+ +|.+.++.++|.+||..|..
T Consensus 212 ~~e-v~seVe~i~~v~~~Gk~vILDI--------DvQnGa-~qlk~~~~~~i~IFI~PPS~eeLe~RL~~RGt 274 (337)
T 4dey_A 212 LAE-VQSEIERIFELARTLQLVVLDA--------DTINHP-AQLSKTSLAPIVVYVKISSPKVLQRLIKSRGK 274 (337)
T ss_dssp HHH-HHHHHHHHHHHTTTCCEEEEEE--------TTCCSG-GGTTTSSCCCEEEEECCSCHHHHHHHHHTTCH
T ss_pred hHH-HHhHHHHHHHHHhCCCEEEEEe--------CcHHHH-HHHHhcCCCCEEEEEECcCHHHHHHHHHhCCc
Confidence 222 2233444 445788888741 122 22 123322 2344 44456789999999998854
No 499
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=93.06 E-value=0.054 Score=45.28 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCcccHHHHHHHHHhh
Q 020775 31 KEKVLILMGATGTGKSRLSIDMATR 55 (321)
Q Consensus 31 ~~~lIvI~GpTGSGKStLa~~LA~~ 55 (321)
+..-|+|+|++|+|||||...|...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3457999999999999999999754
No 500
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.06 E-value=0.065 Score=49.01 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=29.1
Q ss_pred cCCCcEEEEEcCCcccHHHHHHHHHhhC-----CCEEEecCc
Q 020775 29 RQKEKVLILMGATGTGKSRLSIDMATRF-----PAEIINSDK 65 (321)
Q Consensus 29 ~~~~~lIvI~GpTGSGKStLa~~LA~~l-----~~eiIsaDs 65 (321)
..+.++|+|+|--|+||||++..||..+ ..-+|.+|.
T Consensus 38 ~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 38 ITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred cCCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3456788888999999999999988765 345788885
Done!