BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 020776
(321 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GQK|A Chain A, Solution Structure Of Human Ni(Ii)-Sco1
pdb|2GQL|A Chain A, Solution Structure Of Human Ni(Ii)-Sco1
pdb|2GQM|A Chain A, Solution Structure Of Human Cu(I)-Sco1
pdb|2GT5|A Chain A, Solution Structure Of Apo Human Sco1
pdb|2GT6|A Chain A, Solution Structure Of Human Cu(I) Sco1
pdb|2GVP|A Chain A, Solution Structure Of Human Apo Sco1
Length = 173
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 86/169 (50%), Positives = 120/169 (71%), Gaps = 2/169 (1%)
Query: 155 VGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKEN 214
GK +GGPF L H G+ T+KD+LG+W +IYFGFTHCPD+CP+EL+K+ VD+I
Sbjct: 3 TGKPLLGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSI 62
Query: 215 SGI-DIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMK-TA 272
+ + D+ P FIS+DPERDT E + YVKEF PKL+GLTG+ +E+ +ARAYRVYY
Sbjct: 63 TTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPK 122
Query: 273 EEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYKR 321
+ED DY+VDH+I+MYL+ P EF+ +FG+N +A I ++ Y++
Sbjct: 123 DEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPYRK 171
>pdb|2HRF|A Chain A, Solution Structure Of Cu(i) P174l Hsco1
pdb|2HRN|A Chain A, Solution Structure Of Cu(I) P174l-Hsco1
Length = 173
Score = 189 bits (479), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 119/169 (70%), Gaps = 2/169 (1%)
Query: 155 VGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKEN 214
GK +GGPF L H G+ T+KD+LG+W +IYFGFTHCPD+C +EL+K+ VD+I
Sbjct: 3 TGKPLLGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCLEELEKMIQVVDEIDSI 62
Query: 215 SGI-DIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMK-TA 272
+ + D+ P FIS+DPERDT E + YVKEF PKL+GLTG+ +E+ +ARAYRVYY
Sbjct: 63 TTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPK 122
Query: 273 EEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYKR 321
+ED DY+VDH+I+MYL+ P EF+ +FG+N +A I ++ Y++
Sbjct: 123 DEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPYRK 171
>pdb|2GGT|A Chain A, Crystal Structure Of Human Sco1 Complexed With Nickel.
pdb|2GGT|B Chain B, Crystal Structure Of Human Sco1 Complexed With Nickel
Length = 164
Score = 188 bits (478), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 84/163 (51%), Positives = 117/163 (71%), Gaps = 2/163 (1%)
Query: 160 IGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGI-D 218
+GGPF L H G+ T+KD+LG+W +IYFGFTHCPD+CP+EL+K+ VD+I + + D
Sbjct: 2 LGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPD 61
Query: 219 IVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMK-TAEEDSD 277
+ P FIS+DPERDT E + YVKEF PKL+GLTG+ +E+ +ARAYRVYY +ED D
Sbjct: 62 LTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDED 121
Query: 278 YLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYK 320
Y+VDH+I+MYL+ P EF+ +FG+N +A I ++ Y+
Sbjct: 122 YIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATHMRPYR 164
>pdb|1WP0|A Chain A, Human Sco1
pdb|1WP0|B Chain B, Human Sco1
pdb|1WP0|C Chain C, Human Sco1
Length = 165
Score = 181 bits (458), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 82/162 (50%), Positives = 113/162 (69%), Gaps = 2/162 (1%)
Query: 162 GPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGI-DIV 220
GPF L H G+ T+KD+LG+W +IYFGFTHCPD+CP+EL+K VD+I + + D+
Sbjct: 2 GPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKXIQVVDEIDSITTLPDLT 61
Query: 221 PAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMK-TAEEDSDYL 279
P FIS+DPERDT E + YVKEF PKL+GLTG+ +E+ +ARAYRVYY +ED DY+
Sbjct: 62 PLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYI 121
Query: 280 VDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYKR 321
VDH+I+ YL+ P EF+ +FG+N +A I + Y++
Sbjct: 122 VDHTIIXYLIGPDGEFLDYFGQNKRKGEIAASIATHXRPYRK 163
>pdb|2B7J|A Chain A, Crystal Structure Of Yeast Sco1 With Copper Bound
pdb|2B7J|B Chain B, Crystal Structure Of Yeast Sco1 With Copper Bound
pdb|2B7J|C Chain C, Crystal Structure Of Yeast Sco1 With Copper Bound
pdb|2B7J|D Chain D, Crystal Structure Of Yeast Sco1 With Copper Bound
pdb|2B7K|A Chain A, Crystal Structure Of Yeast Sco1
pdb|2B7K|B Chain B, Crystal Structure Of Yeast Sco1
pdb|2B7K|C Chain C, Crystal Structure Of Yeast Sco1
pdb|2B7K|D Chain D, Crystal Structure Of Yeast Sco1
Length = 200
Score = 167 bits (424), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 76/166 (45%), Positives = 110/166 (66%), Gaps = 2/166 (1%)
Query: 156 GKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENS 215
GK ++GGPF L + G TEK+ LGK+++IYFGF++CPDICPDEL KL ++ +
Sbjct: 16 GKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKY 75
Query: 216 GIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMK--TAE 273
GI + P FI+ DP RD+ ++EY+ +FHP ++GLTG+ DE++N + YRVY+ +
Sbjct: 76 GITLQPLFITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVK 135
Query: 274 EDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQY 319
DYLVDHSI YLM P+ +FV G+N D + D I++ +K Y
Sbjct: 136 PGQDYLVDHSIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSY 181
>pdb|2RLI|A Chain A, Solution Structure Of Cu(i) Human Sco2
Length = 171
Score = 164 bits (416), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 71/161 (44%), Positives = 109/161 (67%), Gaps = 2/161 (1%)
Query: 162 GPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIV- 220
G F L++H G+ + DF G+W ++YFGFTHCPDICPDEL+KL V +++ G+ V
Sbjct: 7 GDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQ 66
Query: 221 PAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYY-MKTAEEDSDYL 279
P FI+VDPERD VE + YV++FHP+L+GLTGS ++ + +YRVYY +ED DY+
Sbjct: 67 PVFITVDPERDDVEAMARYVQDFHPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYI 126
Query: 280 VDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYK 320
VDHSI +YL++P F ++G++ ++D + + + ++
Sbjct: 127 VDHSIAIYLLNPDGLFTDYYGRSRSAEQISDSVRRHMAAFR 167
>pdb|2K6V|A Chain A, Solution Structures Of Apo Sco1 Protein From Thermus
Thermophilus
Length = 172
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 66/112 (58%), Gaps = 1/112 (0%)
Query: 179 FLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVRE 238
F K +++FGFT CPD+CP L L A +K+ + + F+SVDPERD E
Sbjct: 33 FQDKVVLLFFGFTRCPDVCPTTLLALKRAYEKLPPKAQERVQVIFVSVDPERDPPEVADR 92
Query: 239 YVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEED-SDYLVDHSIVMYLM 289
Y K FHP +GL+GSP+ +R A+ + V+Y K+ +YLVDH+ +++
Sbjct: 93 YAKAFHPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVV 144
>pdb|1XZO|A Chain A, Identification Of A Disulfide Switch In Bssco, A Member Of
The Sco Family Of Cytochrome C Oxidase Assembly Proteins
pdb|1XZO|B Chain B, Identification Of A Disulfide Switch In Bssco, A Member Of
The Sco Family Of Cytochrome C Oxidase Assembly Proteins
Length = 174
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 11/160 (6%)
Query: 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPA 222
PF N DGKNV+ + G+ + F FT+C ICP + K+K ID+
Sbjct: 15 PFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKA-ENIDVRII 73
Query: 223 FISVDPERDTVEQVREYVKEFHPKLIG---LTG-SPDEIRNIA-RAYRVYYMKTAEEDSD 277
SVDPE D +Q++++ + LTG S EI A ++++ K ED
Sbjct: 74 SFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQ- 132
Query: 278 YLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317
V H YL+ P + +K + N N+ D II ++K
Sbjct: 133 --VIHQSSFYLVGPDGKVLKDY--NGVENTPYDDIISDVK 168
>pdb|1ON4|A Chain A, Solution Structure Of Soluble Domain Of Sco1 From Bacillus
Subtilis
Length = 174
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 11/160 (6%)
Query: 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPA 222
PF N DGKNV+ + G+ + F FT+C ICP + K+K ID+
Sbjct: 15 PFTFQNQDGKNVSLESLKGEVWLADFIFTNCETICPPMTAHMTDLQKKLKA-ENIDVRII 73
Query: 223 FISVDPERDTVEQVREYVKEFHPKLIG---LTG-SPDEIRNIA-RAYRVYYMKTAEEDSD 277
SVDPE D +Q++++ + LTG S EI A ++++ K ED
Sbjct: 74 SFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQ- 132
Query: 278 YLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317
V H YL+ P + +K + N N+ D II ++K
Sbjct: 133 --VIHQSSFYLVGPDGKVLKDY--NGVENTPYDDIISDVK 168
>pdb|4HDE|A Chain A, The Crystal Structure Of A Sco1SENC FAMILY LIPOPROTEIN
FROM BACILLUS Anthracis Str. Ames
Length = 170
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 56/129 (43%), Gaps = 6/129 (4%)
Query: 164 FKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAF 223
F+ N DGK KD GK V F FT+C +CP A KE +D+
Sbjct: 15 FQFTNQDGKPFGTKDLKGKVWVADFXFTNCQTVCPPXTANXAKLQKXAKEEK-LDVQFVS 73
Query: 224 ISVDPERDTVEQVREYVKEFHPKLIG---LTGSPDEIRNIARAYRVYYMKTAEEDSDYLV 280
SVDP+ D E ++ ++++F LTG + +I + + + ++ + V
Sbjct: 74 FSVDPDLDKPENLKAFIQKFTEDTSNWNLLTGY--SLEDITKFSKDNFQSLVDKPENGQV 131
Query: 281 DHSIVMYLM 289
H YL+
Sbjct: 132 IHGTSFYLI 140
>pdb|2L5O|A Chain A, Solution Structure Of A Putative Thioredoxin From
Neisseria Meningitidis
Length = 153
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 164 FKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAF 223
F L + GK V+ D GK T+I F F CP C E+ K+ + K N ++
Sbjct: 11 FSLPDLHGKTVSNADLQGKVTLINFWFPSCPG-CVSEMPKIIKTANDYK-NKNFQVLAVA 68
Query: 224 ISVDPERDTVEQVREYVKEF 243
+DP +E VR+YVK++
Sbjct: 69 QPIDP----IESVRQYVKDY 84
>pdb|3TUE|A Chain A, The Structure Of Tryparedoxin Peroxidase I From Leishmania
Major
pdb|3TUE|B Chain B, The Structure Of Tryparedoxin Peroxidase I From Leishmania
Major
pdb|3TUE|C Chain C, The Structure Of Tryparedoxin Peroxidase I From Leishmania
Major
pdb|3TUE|D Chain D, The Structure Of Tryparedoxin Peroxidase I From Leishmania
Major
pdb|3TUE|E Chain E, The Structure Of Tryparedoxin Peroxidase I From Leishmania
Major
Length = 219
Score = 34.3 bits (77), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 53/120 (44%), Gaps = 10/120 (8%)
Query: 154 SVGKAAIGGP---FKLI----NHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAA 206
S G A I P F+ + N K ++ + GKW V++F +CP E+ +
Sbjct: 22 SCGNAKINSPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEVIAFSD 81
Query: 207 AVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRV 266
+V + E ++ S+D E ++ + K+ + + D+ +NIAR+Y V
Sbjct: 82 SVSRFNE---LNCEVLACSIDSEYAHLQWTLQDRKKGGLGTMAIPILADKTKNIARSYGV 138
>pdb|3ME7|A Chain A, Crystal Structure Of Putative Electron Transport Protein
Aq_2194 From Aquifex Aeolicus Vf5
pdb|3ME7|B Chain B, Crystal Structure Of Putative Electron Transport Protein
Aq_2194 From Aquifex Aeolicus Vf5
pdb|3ME8|A Chain A, Crystal Structure Of Putative Electron Transfer Protein
Aq_2194 From Aquifex Aeolicus Vf5
pdb|3ME8|B Chain B, Crystal Structure Of Putative Electron Transfer Protein
Aq_2194 From Aquifex Aeolicus Vf5
Length = 170
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 162 GPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVP 221
G L++ G K+ GK ++ +THC CP + L + K+ G D
Sbjct: 9 GDITLVDSYGNEFQLKNLKGKPIILSPIYTHCRAACPLITKSLLKVIPKLG-TPGKDFWV 67
Query: 222 AFISVDPERDTVEQVREYVKEF 243
+ DP +DT+E ++ + KE+
Sbjct: 68 ITFTFDP-KDTLEDIKRFQKEY 88
>pdb|2H01|A Chain A, Py00414- Plasmodium Yoelii Thioredoxin Peroxidase I
Length = 192
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 10/141 (7%)
Query: 151 QGPSVGKAAIGGPFKLINHDGKNVTEKDFLGK-WTVIYFGFTHCPDICPDELQKLAAAVD 209
Q PS A+ G ++ V+ DF+GK + ++YF +CP E+ L A+D
Sbjct: 5 QAPSFKAEAVFG-----DNTFGEVSLSDFIGKKYVLLYFYPLDFTFVCPSEIIALDKALD 59
Query: 210 KIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYM 269
KE + ++++ SVD + + + + + I T D ++IAR+Y V +
Sbjct: 60 SFKERN-VELLGC--SVDSKFTHLAWKKTPLSQGGIGNIKHTLISDISKSIARSYDVLFN 116
Query: 270 KTAEEDSDYLVD-HSIVMYLM 289
++ + L+D +V +L+
Sbjct: 117 ESVALRAFVLIDKQGVVQHLL 137
>pdb|3EMP|A Chain A, Crystal Structure Of The S-Acetanilide Modified Form Of
C165s Ahpc
pdb|3EMP|B Chain B, Crystal Structure Of The S-Acetanilide Modified Form Of
C165s Ahpc
pdb|3EMP|C Chain C, Crystal Structure Of The S-Acetanilide Modified Form Of
C165s Ahpc
pdb|3EMP|D Chain D, Crystal Structure Of The S-Acetanilide Modified Form Of
C165s Ahpc
pdb|3EMP|E Chain E, Crystal Structure Of The S-Acetanilide Modified Form Of
C165s Ahpc
Length = 186
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 163 PFK---LINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDI 219
PFK N + VTEKD G+W+V +F +CP EL +A +++++ G+D+
Sbjct: 9 PFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQK-LGVDV 67
>pdb|3IA1|A Chain A, Crystal Structure Of Thio-Disulfide Isomerase From Thermus
Thermophilus
pdb|3IA1|B Chain B, Crystal Structure Of Thio-Disulfide Isomerase From Thermus
Thermophilus
Length = 154
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 10/90 (11%)
Query: 164 FKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAF 223
F L++ G+ VT + K VI F + C +C E L ++ E +G VP +
Sbjct: 14 FLLLDPKGQPVTPAT-VSKPAVIVFWASWC-TVCKAEFPGL----HRVAEETG---VPFY 64
Query: 224 ISVDPERDTVEQVREYVKEFHPKLIGLTGS 253
+ RDT E V EY+K + P+ I L S
Sbjct: 65 VISREPRDTREVVLEYMKTY-PRFIPLLAS 93
>pdb|1YF0|A Chain A, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF0|B Chain B, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF0|C Chain C, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF0|D Chain D, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF0|E Chain E, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin
Length = 186
Score = 32.7 bits (73), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 163 PFK---LINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDI 219
PFK N + VTEKD G+W+V +F +CP EL +A +++++ G+D+
Sbjct: 9 PFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQK-LGVDV 67
>pdb|1YEP|A Chain A, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Olgomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YEP|B Chain B, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Olgomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YEP|C Chain C, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Olgomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YEP|D Chain D, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Olgomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YEP|E Chain E, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Olgomerization In Ahpc, A
Bacterial Peroxiredoxin
Length = 186
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 163 PFK---LINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDI 219
PFK N + VTEKD G+W+V +F +CP EL +A +++++ G+D+
Sbjct: 9 PFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQK-LGVDV 67
>pdb|1YF1|A Chain A, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|B Chain B, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|C Chain C, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|D Chain D, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|E Chain E, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|F Chain F, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|G Chain G, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|H Chain H, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|I Chain I, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YF1|J Chain J, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin
Length = 186
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 163 PFK---LINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDI 219
PFK N + VTEKD G+W+V +F +CP EL +A +++++ G+D+
Sbjct: 9 PFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQK-LGVDV 67
>pdb|1YEX|A Chain A, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YEX|B Chain B, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YEX|C Chain C, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YEX|D Chain D, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin.
pdb|1YEX|E Chain E, Structural And Biochemical Analysis Of The Link Between
Enzymatic Activity And Oligomerization In Ahpc, A
Bacterial Peroxiredoxin
Length = 186
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 163 PFK---LINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDI 219
PFK N + VTEKD G+W+V +F +CP EL +A +++++ G+D+
Sbjct: 9 PFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQK-LGVDV 67
>pdb|3FSU|A Chain A, Crystal Structure Of Escherichia Coli
Methylenetetrahydrofolate Reductase Double Mutant
Phe223leuglu28gln Complexed With Methyltetrahydrofolate
pdb|3FSU|C Chain C, Crystal Structure Of Escherichia Coli
Methylenetetrahydrofolate Reductase Double Mutant
Phe223leuglu28gln Complexed With Methyltetrahydrofolate
pdb|3FSU|E Chain E, Crystal Structure Of Escherichia Coli
Methylenetetrahydrofolate Reductase Double Mutant
Phe223leuglu28gln Complexed With Methyltetrahydrofolate
Length = 304
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 186 IYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV-----DPERDTVEQVREYV 240
I F P + Q L ++D++ + P F+SV ERD + + +
Sbjct: 23 INVSFQFFPPRTSEMEQTLWNSIDRLSS-----LKPKFVSVTYGANSGERDRTHSIIKGI 77
Query: 241 K-----EFHPKLIGLTGSPDEIRNIARAY 264
K E P L + +PDE+R IAR Y
Sbjct: 78 KDRTGLEAAPHLTCIDATPDELRTIARDY 106
>pdb|1ZP4|A Chain A, Glu28gln Mutant Of E. Coli Methylenetetrahydrofolate
Reductase (Oxidized) Complex With Methyltetrahydrofolate
pdb|1ZP4|B Chain B, Glu28gln Mutant Of E. Coli Methylenetetrahydrofolate
Reductase (Oxidized) Complex With Methyltetrahydrofolate
pdb|1ZP4|C Chain C, Glu28gln Mutant Of E. Coli Methylenetetrahydrofolate
Reductase (Oxidized) Complex With Methyltetrahydrofolate
Length = 304
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 186 IYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV-----DPERDTVEQVREYV 240
I F P + Q L ++D++ + P F+SV ERD + + +
Sbjct: 23 INVSFQFFPPRTSEMEQTLWNSIDRLSS-----LKPKFVSVTYGANSGERDRTHSIIKGI 77
Query: 241 K-----EFHPKLIGLTGSPDEIRNIARAY 264
K E P L + +PDE+R IAR Y
Sbjct: 78 KDRTGLEAAPHLTCIDATPDELRTIARDY 106
>pdb|2FMN|A Chain A, Ala177val Mutant Of E. Coli Methylenetetrahydrofolate
Reductase Complex With Ly309887
pdb|2FMN|B Chain B, Ala177val Mutant Of E. Coli Methylenetetrahydrofolate
Reductase Complex With Ly309887
pdb|2FMN|C Chain C, Ala177val Mutant Of E. Coli Methylenetetrahydrofolate
Reductase Complex With Ly309887
pdb|2FMO|A Chain A, Ala177val Mutant Of E. Coli Methylenetetrahydrofolate
Reductase
pdb|2FMO|B Chain B, Ala177val Mutant Of E. Coli Methylenetetrahydrofolate
Reductase
pdb|2FMO|C Chain C, Ala177val Mutant Of E. Coli Methylenetetrahydrofolate
Reductase
Length = 304
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 186 IYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV-----DPERDTVEQVREYV 240
I F P + Q L ++D++ + P F+SV ERD + + +
Sbjct: 23 INVSFEFFPPRTSEMEQTLWNSIDRLSS-----LKPKFVSVTYGANSGERDRTHSIIKGI 77
Query: 241 K-----EFHPKLIGLTGSPDEIRNIARAY 264
K E P L + +PDE+R IAR Y
Sbjct: 78 KDRTGLEAAPHLTCIDATPDELRTIARDY 106
>pdb|1ZP3|A Chain A, E. Coli Methylenetetrahydrofolate Reductase (Oxidized)
pdb|1ZP3|B Chain B, E. Coli Methylenetetrahydrofolate Reductase (Oxidized)
pdb|1ZP3|C Chain C, E. Coli Methylenetetrahydrofolate Reductase (Oxidized)
pdb|1ZPT|A Chain A, Escherichia Coli Methylenetetrahydrofolate Reductase
(reduced) Complexed With Nadh, Ph 7.25
pdb|1ZPT|B Chain B, Escherichia Coli Methylenetetrahydrofolate Reductase
(reduced) Complexed With Nadh, Ph 7.25
pdb|1ZPT|C Chain C, Escherichia Coli Methylenetetrahydrofolate Reductase
(reduced) Complexed With Nadh, Ph 7.25
pdb|1ZRQ|A Chain A, Escherichia Coli Methylenetetrahydrofolate Reductase
(reduced) Complexed With Nadh, Ph 6.0
pdb|1ZRQ|B Chain B, Escherichia Coli Methylenetetrahydrofolate Reductase
(reduced) Complexed With Nadh, Ph 6.0
pdb|1ZRQ|C Chain C, Escherichia Coli Methylenetetrahydrofolate Reductase
(reduced) Complexed With Nadh, Ph 6.0
Length = 304
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 186 IYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV-----DPERDTVEQVREYV 240
I F P + Q L ++D++ + P F+SV ERD + + +
Sbjct: 23 INVSFEFFPPRTSEMEQTLWNSIDRLSS-----LKPKFVSVTYGANSGERDRTHSIIKGI 77
Query: 241 K-----EFHPKLIGLTGSPDEIRNIARAY 264
K E P L + +PDE+R IAR Y
Sbjct: 78 KDRTGLEAAPHLTCIDATPDELRTIARDY 106
>pdb|3FST|A Chain A, Crystal Structure Of Escherichia Coli
Methylenetetrahydrofolate Reductase Mutant Phe223leu At
Ph 7.4
pdb|3FST|C Chain C, Crystal Structure Of Escherichia Coli
Methylenetetrahydrofolate Reductase Mutant Phe223leu At
Ph 7.4
pdb|3FST|E Chain E, Crystal Structure Of Escherichia Coli
Methylenetetrahydrofolate Reductase Mutant Phe223leu At
Ph 7.4
Length = 304
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 186 IYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV-----DPERDTVEQVREYV 240
I F P + Q L ++D++ + P F+SV ERD + + +
Sbjct: 23 INVSFEFFPPRTSEMEQTLWNSIDRLSS-----LKPKFVSVTYGANSGERDRTHSIIKGI 77
Query: 241 K-----EFHPKLIGLTGSPDEIRNIARAY 264
K E P L + +PDE+R IAR Y
Sbjct: 78 KDRTGLEAAPHLTCIDATPDELRTIARDY 106
>pdb|1B5T|A Chain A, Escherichia Coli Methylenetetrahydrofolate Reductase
pdb|1B5T|B Chain B, Escherichia Coli Methylenetetrahydrofolate Reductase
pdb|1B5T|C Chain C, Escherichia Coli Methylenetetrahydrofolate Reductase
Length = 275
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 15/89 (16%)
Query: 186 IYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV-----DPERDTVEQVREYV 240
I F P + Q L ++D++ + P F+SV ERD + + +
Sbjct: 3 INVSFEFFPPRTSEMEQTLWNSIDRLSS-----LKPKFVSVTYGANSGERDRTHSIIKGI 57
Query: 241 K-----EFHPKLIGLTGSPDEIRNIARAY 264
K E P L + +PDE+R IAR Y
Sbjct: 58 KDRTGLEAAPHLTCIDATPDELRTIARDY 86
>pdb|1WE0|A Chain A, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|B Chain B, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|C Chain C, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|D Chain D, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|E Chain E, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|F Chain F, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|G Chain G, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|H Chain H, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|I Chain I, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
pdb|1WE0|J Chain J, Crystal Structure Of Peroxiredoxin (Ahpc) From
Amphibacillus Xylanus
Length = 187
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 174 VTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIK 212
VTE D GKW+++ F +CP EL+ + ++K
Sbjct: 24 VTEADLKGKWSIVVFYPADFSFVCPTELEDVQKEYAELK 62
>pdb|1ZYE|A Chain A, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|B Chain B, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|C Chain C, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|D Chain D, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|E Chain E, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|F Chain F, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|G Chain G, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|H Chain H, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|I Chain I, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|J Chain J, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|K Chain K, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
pdb|1ZYE|L Chain L, Crystal Strucutre Analysis Of Bovine Mitochondrial
Peroxiredoxin Iii
Length = 220
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 156 GKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENS 215
G A + G FK I+ D DF GK+ V++F +CP E + A DK E
Sbjct: 38 GTAVVSGEFKEISLD-------DFKGKYLVLFFYPLDFTFVCPTE---IIAFSDKASEFH 87
Query: 216 GIDIVPAFISVD 227
++ +SVD
Sbjct: 88 DVNCEVVAVSVD 99
>pdb|1IZC|A Chain A, Crystal Structure Analysis Of Macrophomate Synthase
Length = 339
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 209 DKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIG 249
D++ ++ +D A I + P +TVE+VRE+VKE + IG
Sbjct: 106 DEVSLSTALDAGAAGIVI-PHVETVEEVREFVKEMYYGPIG 145
>pdb|1HKC|A Chain A, Recombinant Human Hexokinase Type I Complexed With Glucose
And Phosphate
pdb|1QHA|A Chain A, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
pdb|1QHA|B Chain B, Human Hexokinase Type I Complexed With Atp Analogue
Amp-Pnp
Length = 917
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Query: 204 LAAAVDKIKENSGIDIVPAFISVD-------PERDTVEQVREYVKEFHPK 246
+AA VDKI+EN G+D + + VD P + + + VKE PK
Sbjct: 838 MAAVVDKIRENRGLDRLNVTVGVDGTLYKLHPHFSRI--MHQTVKELSPK 885
>pdb|1HKB|A Chain A, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
pdb|1HKB|B Chain B, Crystal Structure Of Recombinant Human Brain Hexokinase
Type I Complexed With Glucose And Glucose-6-Phosphate
Length = 917
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Query: 204 LAAAVDKIKENSGIDIVPAFISVD-------PERDTVEQVREYVKEFHPK 246
+AA VDKI+EN G+D + + VD P + + + VKE PK
Sbjct: 838 MAAVVDKIRENRGLDRLNVTVGVDGTLYKLHPHFSRI--MHQTVKELSPK 885
>pdb|2NZT|A Chain A, Crystal Structure Of Human Hexokinase Ii
pdb|2NZT|B Chain B, Crystal Structure Of Human Hexokinase Ii
Length = 902
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 204 LAAAVDKIKENSGIDIVPAFISVD 227
+AA VD+I+EN G+D + + VD
Sbjct: 824 MAAVVDRIRENRGLDALKVTVGVD 847
>pdb|1DGK|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I With
Glucose And Adp In The Active Site
Length = 917
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Query: 204 LAAAVDKIKENSGIDIVPAFISVD-------PERDTVEQVREYVKEFHPK 246
+AA VDKI+EN G+D + + VD P + + + VKE PK
Sbjct: 838 MAAVVDKIRENRGLDRLNVTVGVDGTLYKLHPHFSRI--MHQTVKELSPK 885
>pdb|1CZA|N Chain N, Mutant Monomer Of Recombinant Human Hexokinase Type I
Complexed With Glucose, Glucose-6-Phosphate, And Adp
Length = 917
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 9/50 (18%)
Query: 204 LAAAVDKIKENSGIDIVPAFISVD-------PERDTVEQVREYVKEFHPK 246
+AA VDKI+EN G+D + + VD P + + + VKE PK
Sbjct: 838 MAAVVDKIRENRGLDRLNVTVGVDGTLYKLHPHFSRI--MHQTVKELSPK 885
>pdb|1UUL|A Chain A, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|B Chain B, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|C Chain C, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|D Chain D, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|E Chain E, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|F Chain F, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|G Chain G, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|H Chain H, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|I Chain I, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
pdb|1UUL|J Chain J, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In
The Reduced State
Length = 202
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 168 NHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227
N K V + GKW V++F +CP E+ + + D++KE S I S+D
Sbjct: 23 NGTFKKVALTSYKGKWLVLFFYPMDFTFVCPTEICQFS---DRVKEFSDIGCEVLACSMD 79
Query: 228 PE 229
E
Sbjct: 80 SE 81
>pdb|2W4A|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|B Chain B, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 150
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 159 AIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAA 207
I G FK+++ DGK +K FL + T C P+E++ + AA
Sbjct: 83 VIMGAFKVLDPDGKGSIKKSFLEELLT-----TQCDRFTPEEIKNMWAA 126
>pdb|2XCI|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCI|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Substrate-Free Form
pdb|2XCU|A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|B Chain B, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|C Chain C, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
pdb|2XCU|D Chain D, Membrane-Embedded Monofunctional Glycosyltransferase Waaa
Of Aquifex Aeolicus, Comlex With Cmp
Length = 374
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 49/107 (45%), Gaps = 8/107 (7%)
Query: 149 VKQGPSVGKAAI-GGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAA 207
+K+ VGK AI GG F +N G N+ E G VIY +TH + + L+K A
Sbjct: 271 LKELYPVGKIAIVGGTF--VNIGGHNLLEPTCWG-IPVIYGPYTHKVNDLKEFLEKEGAG 327
Query: 208 VDKIKENSGIDIVPAFISVDPERDTVEQVRE----YVKEFHPKLIGL 250
+ E + + +SV E E+ RE Y+++ L GL
Sbjct: 328 FEVKNETELVTKLTELLSVKKEIKVEEKSREIKGCYLEKLREFLRGL 374
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 147 QAVKQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDE 200
+A P V A+ FKL G+N + + GK ++ F + CP C DE
Sbjct: 7 KAESDAPLVRTGALAPNFKLPTLSGENKSLAQYRGKIVLVNFWASWCP-YCRDE 59
>pdb|1N8J|A Chain A, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|B Chain B, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|C Chain C, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|D Chain D, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|E Chain E, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|F Chain F, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|G Chain G, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|H Chain H, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|I Chain I, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|J Chain J, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|K Chain K, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|L Chain L, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|M Chain M, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|N Chain N, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|O Chain O, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|P Chain P, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|Q Chain Q, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|R Chain R, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|S Chain S, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
pdb|1N8J|T Chain T, Crystal Structure Of Ahpc With Active Site Cysteine
Mutated To Serine (C46s)
Length = 186
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 163 PFK---LINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDI 219
PFK N + VTEKD G+W+V +F + P EL +A +++++ G+D+
Sbjct: 9 PFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVSPTELGDVADHYEELQK-LGVDV 67
>pdb|3ZVJ|A Chain A, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|B Chain B, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|C Chain C, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|E Chain E, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|F Chain F, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|G Chain G, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|H Chain H, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|I Chain I, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|J Chain J, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|K Chain K, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|L Chain L, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|M Chain M, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|N Chain N, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|O Chain O, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|P Chain P, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|Q Chain Q, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|R Chain R, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|S Chain S, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
pdb|3ZVJ|T Chain T, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
Length = 219
Score = 28.5 bits (62), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 156 GKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDK 210
G+A I G FK + KD+ GK+ V++F +CP E+ + V++
Sbjct: 48 GQAVINGEFK-------EICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEE 95
>pdb|3ZVJ|D Chain D, Crystal Structure Of High Molecular Weight (Hmw) Form Of
Peroxiredoxin I From Schistosoma Mansoni
Length = 219
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 7/56 (12%)
Query: 156 GKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKI 211
G+A I G FK + KD+ GK+ V++F +CP E+ + V++
Sbjct: 48 GQAVINGEFK-------EICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEEF 96
>pdb|3ZTL|A Chain A, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|B Chain B, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|C Chain C, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|D Chain D, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|E Chain E, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|F Chain F, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|G Chain G, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|H Chain H, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|I Chain I, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
pdb|3ZTL|J Chain J, Crystal Structure Of Decameric Form Of Peroxiredoxin I
From Schistosoma Mansoni
Length = 222
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 166 LINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDK 210
+IN + K + KD+ GK+ V++F +CP E+ + V++
Sbjct: 54 VINGEFKEICLKDYRGKYVVLFFYPADFTFVCPTEIIAFSDQVEE 98
>pdb|4EO3|A Chain A, Peroxiredoxin Nitroreductase Fusion Enzyme
pdb|4EO3|B Chain B, Peroxiredoxin Nitroreductase Fusion Enzyme
Length = 322
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 164 FKLINHDGKNVTEKDFLGKWTVIYF 188
F+L+ +GK T D GK+T+++F
Sbjct: 7 FELLTDEGKTFTHVDLYGKYTILFF 31
>pdb|3BH4|A Chain A, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
pdb|3BH4|B Chain B, High Resolution Crystal Structure Of Bacillus
Amyloliquefaciens Alpha-Amylase
Length = 483
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 41/114 (35%), Gaps = 23/114 (20%)
Query: 17 QRFYFHTLLTKCRPPIPSPTIADNIQHRALPLIQQAIPFGIGFQSFVADQRFXXXXXXXX 76
Q FY TK P P++ DNI+ P+++ + G Q D
Sbjct: 360 QVFYGDMYGTKGTSPKEIPSLKDNIE----PILKARKEYAYGPQHDYIDH---------- 405
Query: 77 XXXXXXXKPNSEGGDKSGDSNQSKSDTGKPIRGGPISWLSFLLLALTGAGIIWY 130
P+ G + GDS+ +KS I GP + L AG WY
Sbjct: 406 --------PDVIGWTREGDSSAAKSGLAALITDGPGG-SKRMYAGLKNAGETWY 450
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,786,704
Number of Sequences: 62578
Number of extensions: 413198
Number of successful extensions: 1029
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 983
Number of HSP's gapped (non-prelim): 56
length of query: 321
length of database: 14,973,337
effective HSP length: 99
effective length of query: 222
effective length of database: 8,778,115
effective search space: 1948741530
effective search space used: 1948741530
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)