Query 020776
Match_columns 321
No_of_seqs 295 out of 2114
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 05:04:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/020776.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/020776hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2792 Putative cytochrome C 100.0 8.4E-37 1.8E-41 272.3 21.4 215 102-321 62-280 (280)
2 COG1999 Uncharacterized protei 100.0 2E-27 4.3E-32 212.4 22.8 156 163-318 49-206 (207)
3 PF02630 SCO1-SenC: SCO1/SenC; 100.0 1.5E-27 3.2E-32 207.9 16.4 140 161-301 32-173 (174)
4 cd02968 SCO SCO (an acronym fo 99.9 4.8E-25 1E-29 184.1 17.7 139 162-300 3-141 (142)
5 PRK15412 thiol:disulfide inter 99.9 6.8E-25 1.5E-29 192.8 15.1 139 152-319 38-179 (185)
6 PTZ00056 glutathione peroxidas 99.9 3.3E-23 7.2E-28 184.2 18.5 153 153-318 13-180 (199)
7 PRK03147 thiol-disulfide oxido 99.9 5.8E-23 1.3E-27 177.2 17.7 137 151-313 33-169 (173)
8 PLN02399 phospholipid hydroper 99.9 1.4E-23 3E-28 190.5 14.0 158 153-317 73-235 (236)
9 cd00340 GSH_Peroxidase Glutath 99.9 2.2E-23 4.8E-28 177.3 10.2 141 162-311 3-151 (152)
10 PF08534 Redoxin: Redoxin; In 99.9 4.1E-23 8.9E-28 173.7 11.4 133 154-304 1-136 (146)
11 PLN02412 probable glutathione 99.9 6E-23 1.3E-27 177.7 12.4 152 161-318 9-166 (167)
12 TIGR02661 MauD methylamine deh 99.9 4.2E-22 9.2E-27 175.7 18.1 118 150-298 43-162 (189)
13 TIGR00385 dsbE periplasmic pro 99.9 1.2E-22 2.5E-27 176.6 13.1 138 151-317 32-172 (173)
14 COG1225 Bcp Peroxiredoxin [Pos 99.9 6.9E-22 1.5E-26 167.7 16.4 153 152-320 3-156 (157)
15 PRK09437 bcp thioredoxin-depen 99.9 4.2E-22 9E-27 169.4 14.9 149 152-316 3-152 (154)
16 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 2.5E-22 5.4E-27 163.5 12.5 123 155-298 1-124 (124)
17 TIGR02540 gpx7 putative glutat 99.9 3E-22 6.4E-27 170.5 12.3 140 163-316 4-153 (153)
18 cd02969 PRX_like1 Peroxiredoxi 99.9 6.3E-22 1.4E-26 171.3 14.5 139 156-317 1-153 (171)
19 PRK00522 tpx lipid hydroperoxi 99.9 1.1E-21 2.3E-26 169.8 14.8 131 150-300 15-148 (167)
20 cd03015 PRX_Typ2cys Peroxiredo 99.9 7.4E-22 1.6E-26 171.5 13.8 128 155-303 1-140 (173)
21 cd03018 PRX_AhpE_like Peroxire 99.9 1.4E-21 3E-26 164.7 13.0 142 154-316 2-147 (149)
22 PTZ00256 glutathione peroxidas 99.9 1.3E-21 2.7E-26 171.8 12.9 144 157-317 18-182 (183)
23 cd03017 PRX_BCP Peroxiredoxin 99.9 1.8E-21 3.8E-26 162.2 12.5 133 162-310 4-137 (140)
24 TIGR03137 AhpC peroxiredoxin. 99.9 2.5E-21 5.5E-26 170.5 14.0 145 154-319 3-155 (187)
25 PRK13190 putative peroxiredoxi 99.9 4.7E-21 1E-25 170.8 12.9 149 153-319 2-153 (202)
26 cd03014 PRX_Atyp2cys Peroxired 99.9 1E-20 2.2E-25 158.7 13.6 124 155-301 2-128 (143)
27 cd03010 TlpA_like_DsbE TlpA-li 99.9 4E-21 8.6E-26 158.0 10.4 120 162-307 4-125 (127)
28 cd03008 TryX_like_RdCVF Trypar 99.8 2E-20 4.3E-25 158.2 14.3 108 173-298 17-128 (146)
29 cd03012 TlpA_like_DipZ_like Tl 99.8 6.4E-21 1.4E-25 157.0 10.4 111 171-302 13-125 (126)
30 PRK14018 trifunctional thiored 99.8 8.7E-20 1.9E-24 181.8 17.7 136 153-313 32-170 (521)
31 PRK13599 putative peroxiredoxi 99.8 4.8E-20 1E-24 165.7 13.7 151 153-320 2-156 (215)
32 PRK15000 peroxidase; Provision 99.8 5E-20 1.1E-24 163.9 12.6 146 154-320 3-162 (200)
33 PRK13191 putative peroxiredoxi 99.8 6.9E-20 1.5E-24 164.8 13.6 149 152-320 6-161 (215)
34 cd02967 mauD Methylamine utili 99.8 9.1E-20 2E-24 146.7 12.8 109 162-298 1-111 (114)
35 cd03016 PRX_1cys Peroxiredoxin 99.8 1.1E-19 2.4E-24 162.0 14.7 146 155-320 1-154 (203)
36 PRK10382 alkyl hydroperoxide r 99.8 1.1E-19 2.3E-24 160.1 14.2 146 154-320 3-156 (187)
37 PTZ00137 2-Cys peroxiredoxin; 99.8 2E-19 4.4E-24 165.4 14.7 149 150-320 65-225 (261)
38 cd02971 PRX_family Peroxiredox 99.8 1.5E-19 3.3E-24 150.3 12.0 127 162-304 3-131 (140)
39 cd03011 TlpA_like_ScsD_MtbDsbE 99.8 1.6E-19 3.4E-24 147.2 11.0 122 162-312 1-122 (123)
40 cd02966 TlpA_like_family TlpA- 99.8 2.2E-19 4.7E-24 142.0 11.2 116 163-301 1-116 (116)
41 cd02964 TryX_like_family Trypa 99.8 2E-19 4.3E-24 149.3 11.5 108 172-299 8-116 (132)
42 PTZ00253 tryparedoxin peroxida 99.8 2.6E-19 5.6E-24 159.2 12.8 147 153-320 6-164 (199)
43 PRK13189 peroxiredoxin; Provis 99.8 4.7E-19 1E-23 160.1 13.0 148 152-320 8-163 (222)
44 PRK10606 btuE putative glutath 99.8 7.8E-19 1.7E-23 154.0 13.6 151 162-317 6-182 (183)
45 cd03009 TryX_like_TryX_NRX Try 99.8 4E-19 8.7E-24 146.9 10.9 113 166-299 3-116 (131)
46 PLN02919 haloacid dehalogenase 99.8 5.6E-19 1.2E-23 190.4 14.4 145 151-319 389-539 (1057)
47 TIGR01626 ytfJ_HI0045 conserve 99.8 1.3E-18 2.7E-23 152.3 13.7 144 152-320 22-183 (184)
48 cd02970 PRX_like2 Peroxiredoxi 99.8 1.9E-18 4.2E-23 144.8 11.7 129 162-301 3-148 (149)
49 PRK13728 conjugal transfer pro 99.8 1.9E-17 4.2E-22 144.2 14.4 115 162-318 56-173 (181)
50 PF13905 Thioredoxin_8: Thiore 99.7 8.4E-18 1.8E-22 131.1 10.2 95 181-295 1-95 (95)
51 COG0450 AhpC Peroxiredoxin [Po 99.7 3.9E-17 8.5E-22 141.8 11.8 148 153-320 3-161 (194)
52 cd03013 PRX5_like Peroxiredoxi 99.7 1.6E-16 3.5E-21 135.9 12.3 130 155-301 1-139 (155)
53 KOG2501 Thioredoxin, nucleored 99.6 2.2E-15 4.8E-20 127.1 9.1 117 164-299 15-132 (157)
54 TIGR02738 TrbB type-F conjugat 99.6 3.2E-14 6.9E-19 121.4 12.0 105 171-315 44-152 (153)
55 cd02950 TxlA TRX-like protein 99.6 7.5E-15 1.6E-19 123.8 7.8 109 165-318 2-112 (142)
56 COG0386 BtuE Glutathione perox 99.5 1.9E-13 4.2E-18 114.2 9.7 143 163-317 7-161 (162)
57 cd02985 TRX_CDSP32 TRX family, 99.4 5.9E-13 1.3E-17 105.9 10.0 89 178-313 12-100 (103)
58 KOG0855 Alkyl hydroperoxide re 99.4 2.8E-12 6.1E-17 108.3 10.6 147 152-317 62-209 (211)
59 cd02951 SoxW SoxW family; SoxW 99.3 6.6E-12 1.4E-16 102.9 10.4 105 180-318 12-121 (125)
60 KOG0910 Thioredoxin-like prote 99.3 9.2E-12 2E-16 104.4 10.0 89 181-317 61-149 (150)
61 TIGR02740 TraF-like TraF-like 99.3 5.6E-12 1.2E-16 117.3 9.2 109 171-317 156-265 (271)
62 KOG0852 Alkyl hydroperoxide re 99.3 2.1E-11 4.6E-16 103.9 11.6 146 155-320 6-161 (196)
63 cd02956 ybbN ybbN protein fami 99.3 2E-11 4.3E-16 95.1 9.9 85 180-312 11-95 (96)
64 cd02999 PDI_a_ERp44_like PDIa 99.3 8.5E-12 1.8E-16 98.9 7.7 85 177-310 14-98 (100)
65 cd02948 TRX_NDPK TRX domain, T 99.3 2.1E-11 4.6E-16 96.7 9.7 86 180-314 16-101 (102)
66 KOG1651 Glutathione peroxidase 99.3 1.8E-11 3.9E-16 103.7 8.2 144 163-317 16-170 (171)
67 cd02963 TRX_DnaJ TRX domain, D 99.3 3.6E-11 7.7E-16 96.9 9.5 90 178-314 21-110 (111)
68 cd02953 DsbDgamma DsbD gamma f 99.2 2.7E-11 5.9E-16 96.0 8.3 90 180-312 10-103 (104)
69 PRK09381 trxA thioredoxin; Pro 99.2 7.7E-11 1.7E-15 94.1 9.9 89 180-316 20-108 (109)
70 PF13098 Thioredoxin_2: Thiore 99.2 3.2E-11 7E-16 96.5 6.9 109 180-312 4-112 (112)
71 PHA02278 thioredoxin-like prot 99.2 8.3E-11 1.8E-15 93.8 8.8 87 180-310 13-99 (103)
72 COG2077 Tpx Peroxiredoxin [Pos 99.2 6.9E-10 1.5E-14 92.7 13.8 131 150-298 15-146 (158)
73 cd03003 PDI_a_ERdj5_N PDIa fam 99.2 9.7E-11 2.1E-15 92.3 8.0 94 169-310 6-99 (101)
74 PRK10996 thioredoxin 2; Provis 99.2 2.4E-10 5.3E-15 95.9 10.4 88 180-315 51-138 (139)
75 cd02954 DIM1 Dim1 family; Dim1 99.2 1.1E-10 2.4E-15 94.5 8.0 78 180-305 13-90 (114)
76 PLN00410 U5 snRNP protein, DIM 99.1 5.2E-10 1.1E-14 94.0 11.3 93 180-319 22-123 (142)
77 cd02994 PDI_a_TMX PDIa family, 99.1 4.3E-10 9.3E-15 88.4 9.1 86 179-313 15-100 (101)
78 cd03000 PDI_a_TMX3 PDIa family 99.1 6.1E-10 1.3E-14 88.3 10.0 89 180-314 14-102 (104)
79 cd02997 PDI_a_PDIR PDIa family 99.1 3.2E-10 7E-15 89.0 7.0 87 180-310 16-102 (104)
80 cd03005 PDI_a_ERp46 PDIa famil 99.1 5.2E-10 1.1E-14 87.6 7.9 84 182-310 17-100 (102)
81 KOG0854 Alkyl hydroperoxide re 99.1 1.4E-09 3E-14 92.9 10.8 159 151-320 4-168 (224)
82 cd02949 TRX_NTR TRX domain, no 99.1 1.5E-09 3.2E-14 85.0 10.4 85 180-312 12-96 (97)
83 TIGR01126 pdi_dom protein disu 99.0 5.5E-10 1.2E-14 87.1 7.2 89 180-314 12-100 (102)
84 cd03004 PDI_a_ERdj5_C PDIa fam 99.0 8.3E-10 1.8E-14 87.2 8.3 84 180-310 18-102 (104)
85 cd03002 PDI_a_MPD1_like PDI fa 99.0 6.4E-10 1.4E-14 88.4 7.6 88 180-312 17-108 (109)
86 KOG0907 Thioredoxin [Posttrans 99.0 1.5E-09 3.3E-14 87.0 9.2 75 180-303 20-94 (106)
87 TIGR01068 thioredoxin thioredo 99.0 2.9E-09 6.3E-14 82.6 9.6 87 181-315 14-100 (101)
88 cd02996 PDI_a_ERp44 PDIa famil 99.0 1.7E-09 3.7E-14 86.3 8.4 87 180-310 17-106 (108)
89 cd03006 PDI_a_EFP1_N PDIa fami 99.0 2.5E-09 5.5E-14 86.7 9.2 83 180-310 28-111 (113)
90 PTZ00443 Thioredoxin domain-co 99.0 3.2E-09 7E-14 96.0 10.1 92 180-319 51-142 (224)
91 cd02962 TMX2 TMX2 family; comp 99.0 4.6E-09 9.9E-14 89.6 10.2 45 180-228 46-90 (152)
92 cd02993 PDI_a_APS_reductase PD 98.9 3.1E-09 6.7E-14 85.2 8.0 86 180-310 20-107 (109)
93 cd02959 ERp19 Endoplasmic reti 98.9 1.5E-09 3.3E-14 88.5 5.3 97 175-317 13-114 (117)
94 COG3118 Thioredoxin domain-con 98.9 4.3E-09 9.3E-14 97.3 8.3 89 180-316 42-130 (304)
95 PF00085 Thioredoxin: Thioredo 98.9 8.7E-09 1.9E-13 80.3 8.8 87 180-314 16-102 (103)
96 PTZ00051 thioredoxin; Provisio 98.9 9.2E-09 2E-13 80.2 8.7 79 180-308 17-95 (98)
97 cd02965 HyaE HyaE family; HyaE 98.9 1E-08 2.2E-13 82.7 8.9 82 180-309 26-109 (111)
98 cd02984 TRX_PICOT TRX domain, 98.9 1.3E-08 2.7E-13 79.1 8.7 82 181-311 14-95 (97)
99 cd03065 PDI_b_Calsequestrin_N 98.9 1.5E-08 3.3E-13 83.0 9.4 90 181-316 27-119 (120)
100 cd02998 PDI_a_ERp38 PDIa famil 98.8 1E-08 2.3E-13 80.3 7.4 86 181-310 18-103 (105)
101 PRK00293 dipZ thiol:disulfide 98.8 1.2E-08 2.5E-13 104.4 9.4 94 177-314 470-568 (571)
102 cd03001 PDI_a_P5 PDIa family, 98.8 3E-08 6.5E-13 77.7 8.8 84 181-311 18-101 (103)
103 cd02961 PDI_a_family Protein D 98.8 8.2E-09 1.8E-13 79.5 5.4 86 180-310 14-99 (101)
104 cd02992 PDI_a_QSOX PDIa family 98.8 2.6E-08 5.6E-13 80.7 8.3 63 181-271 19-81 (114)
105 PF00255 GSHPx: Glutathione pe 98.8 9.1E-08 2E-12 76.8 10.7 83 163-250 3-90 (108)
106 PTZ00102 disulphide isomerase; 98.8 9E-08 1.9E-12 95.3 12.7 104 167-316 35-138 (477)
107 cd02957 Phd_like Phosducin (Ph 98.7 2.8E-08 6E-13 80.2 7.0 71 181-301 24-94 (113)
108 cd02975 PfPDO_like_N Pyrococcu 98.7 1.2E-07 2.5E-12 76.8 10.4 87 180-316 21-110 (113)
109 TIGR01295 PedC_BrcD bacterioci 98.7 1.1E-07 2.4E-12 78.1 10.3 92 180-310 22-118 (122)
110 cd02986 DLP Dim1 family, Dim1- 98.7 1E-07 2.2E-12 77.1 9.2 59 180-271 13-71 (114)
111 cd02955 SSP411 TRX domain, SSP 98.7 1.9E-07 4.2E-12 76.9 10.7 84 177-299 11-97 (124)
112 cd02947 TRX_family TRX family; 98.7 2.4E-07 5.2E-12 69.7 10.0 82 181-311 10-91 (93)
113 cd02958 UAS UAS family; UAS is 98.7 2.9E-07 6.3E-12 74.2 10.9 97 177-318 13-113 (114)
114 TIGR00411 redox_disulf_1 small 98.7 2.7E-07 5.9E-12 69.3 9.9 80 184-315 2-81 (82)
115 PTZ00102 disulphide isomerase; 98.6 7E-08 1.5E-12 96.1 8.2 108 165-317 358-466 (477)
116 cd02989 Phd_like_TxnDC9 Phosdu 98.6 1.5E-07 3.2E-12 76.2 8.6 73 180-301 21-93 (113)
117 cd02995 PDI_a_PDI_a'_C PDIa fa 98.6 1E-07 2.2E-12 74.5 7.2 44 181-227 18-61 (104)
118 cd02952 TRP14_like Human TRX-r 98.6 5.9E-08 1.3E-12 79.4 5.6 79 179-297 19-105 (119)
119 cd02987 Phd_like_Phd Phosducin 98.5 2.8E-07 6E-12 80.5 8.2 71 181-301 83-153 (175)
120 PF00837 T4_deiodinase: Iodoth 98.5 5.6E-07 1.2E-11 81.2 9.7 147 149-319 69-236 (237)
121 TIGR00424 APS_reduc 5'-adenyly 98.5 4.2E-07 9.1E-12 90.3 9.4 91 179-313 369-460 (463)
122 TIGR01130 ER_PDI_fam protein d 98.5 4.4E-07 9.5E-12 89.5 8.9 92 180-316 17-109 (462)
123 cd02982 PDI_b'_family Protein 98.4 1.1E-06 2.4E-11 68.9 8.1 41 181-226 12-52 (103)
124 cd02988 Phd_like_VIAF Phosduci 98.4 2.3E-06 5.1E-11 75.7 10.1 70 180-301 101-170 (192)
125 PLN02309 5'-adenylylsulfate re 98.3 2.6E-06 5.7E-11 84.6 10.5 90 180-314 364-455 (457)
126 TIGR02187 GlrX_arch Glutaredox 98.3 2.9E-06 6.4E-11 76.2 9.8 91 179-316 17-111 (215)
127 TIGR02739 TraF type-F conjugat 98.3 3.1E-06 6.6E-11 78.0 9.6 107 176-320 145-252 (256)
128 KOG0908 Thioredoxin-like prote 98.3 2.2E-06 4.9E-11 77.4 8.2 92 176-317 16-107 (288)
129 PF13728 TraF: F plasmid trans 98.3 3.3E-06 7.2E-11 76.1 9.1 99 176-312 115-214 (215)
130 PTZ00062 glutaredoxin; Provisi 98.2 5.4E-06 1.2E-10 74.0 9.0 75 182-314 18-92 (204)
131 TIGR00412 redox_disulf_2 small 98.2 1.1E-05 2.4E-10 60.5 8.6 33 185-222 2-34 (76)
132 TIGR02187 GlrX_arch Glutaredox 98.2 7.3E-06 1.6E-10 73.6 8.6 84 179-314 131-214 (215)
133 PRK13703 conjugal pilus assemb 98.2 1E-05 2.3E-10 74.1 9.4 107 176-320 138-245 (248)
134 PHA02125 thioredoxin-like prot 98.1 3.5E-05 7.5E-10 57.5 9.0 22 185-207 2-23 (75)
135 cd03026 AhpF_NTD_C TRX-GRX-lik 98.1 3.7E-05 8E-10 59.6 9.3 79 176-307 7-85 (89)
136 cd02960 AGR Anterior Gradient 98.0 3.6E-05 7.7E-10 63.9 9.4 25 179-204 21-45 (130)
137 smart00594 UAS UAS domain. 98.0 4.5E-05 9.8E-10 62.4 9.8 91 177-312 23-121 (122)
138 TIGR01130 ER_PDI_fam protein d 98.0 2.7E-05 5.8E-10 76.9 8.6 90 180-315 363-453 (462)
139 COG0526 TrxA Thiol-disulfide i 97.9 3.8E-05 8.3E-10 59.1 6.2 49 173-226 24-72 (127)
140 KOG0190 Protein disulfide isom 97.8 3.6E-05 7.8E-10 76.6 6.9 91 180-315 41-131 (493)
141 cd02973 TRX_GRX_like Thioredox 97.8 0.00018 3.8E-09 52.0 8.4 38 184-227 2-39 (67)
142 PF14595 Thioredoxin_9: Thiore 97.7 8.4E-05 1.8E-09 61.7 6.8 36 176-212 36-71 (129)
143 cd01659 TRX_superfamily Thiore 97.6 0.00025 5.4E-09 48.2 6.3 38 185-228 1-38 (69)
144 KOG0912 Thiol-disulfide isomer 97.6 0.00021 4.6E-09 66.5 7.3 93 181-316 13-106 (375)
145 COG0678 AHP1 Peroxiredoxin [Po 97.5 0.0015 3.2E-08 55.1 11.0 132 153-299 3-145 (165)
146 PF04592 SelP_N: Selenoprotein 97.4 0.0011 2.4E-08 59.8 9.8 116 163-302 12-129 (238)
147 cd03007 PDI_a_ERp29_N PDIa fam 97.4 0.0012 2.6E-08 53.7 8.9 93 180-314 17-114 (116)
148 PF13899 Thioredoxin_7: Thiore 97.4 0.00044 9.6E-09 52.2 5.8 44 179-227 15-61 (82)
149 KOG0191 Thioredoxin/protein di 97.4 0.00093 2E-08 65.2 9.3 90 180-317 46-135 (383)
150 PF05176 ATP-synt_10: ATP10 pr 97.3 0.002 4.4E-08 59.4 10.8 132 158-310 98-244 (252)
151 cd03023 DsbA_Com1_like DsbA fa 97.3 0.0022 4.7E-08 53.2 9.7 32 180-212 4-35 (154)
152 TIGR02196 GlrX_YruB Glutaredox 97.3 0.0022 4.8E-08 46.2 8.4 21 185-206 2-22 (74)
153 PF05988 DUF899: Bacterial pro 97.3 0.0059 1.3E-07 54.4 12.3 119 163-301 48-174 (211)
154 COG4232 Thiol:disulfide interc 97.2 0.00062 1.3E-08 68.7 6.6 96 178-315 471-567 (569)
155 cd02991 UAS_ETEA UAS family, E 97.2 0.0022 4.7E-08 52.2 8.7 93 178-318 14-115 (116)
156 PRK10877 protein disulfide iso 97.2 0.0038 8.2E-08 56.9 10.7 110 180-314 106-229 (232)
157 COG2143 Thioredoxin-related pr 97.2 0.0085 1.8E-07 50.9 11.7 103 177-313 38-146 (182)
158 cd03020 DsbA_DsbC_DsbG DsbA fa 97.2 0.0045 9.9E-08 54.6 10.7 111 174-310 70-195 (197)
159 PF09695 YtfJ_HI0045: Bacteria 97.1 0.0047 1E-07 52.6 9.6 125 172-317 28-158 (160)
160 PRK11509 hydrogenase-1 operon 96.9 0.0042 9.2E-08 51.6 7.7 81 191-318 46-126 (132)
161 TIGR02200 GlrX_actino Glutared 96.8 0.0076 1.7E-07 44.1 7.8 22 185-207 2-23 (77)
162 KOG1731 FAD-dependent sulfhydr 96.8 0.0029 6.2E-08 63.6 7.0 62 182-271 58-119 (606)
163 cd03019 DsbA_DsbA DsbA family, 96.7 0.017 3.6E-07 49.4 10.5 44 180-226 14-57 (178)
164 PRK11657 dsbG disulfide isomer 96.6 0.016 3.4E-07 53.5 10.1 119 174-312 110-248 (251)
165 COG4312 Uncharacterized protei 96.4 0.015 3.2E-07 52.0 7.8 125 163-299 54-197 (247)
166 KOG0190 Protein disulfide isom 96.3 0.0073 1.6E-07 60.4 6.0 40 180-222 383-422 (493)
167 KOG0541 Alkyl hydroperoxide re 96.3 0.023 5E-07 48.3 7.8 137 150-299 6-151 (171)
168 PF13192 Thioredoxin_3: Thiore 96.1 0.055 1.2E-06 40.2 8.8 22 189-211 6-27 (76)
169 PF03190 Thioredox_DsbH: Prote 96.1 0.062 1.3E-06 46.3 10.0 96 164-298 20-118 (163)
170 PF13778 DUF4174: Domain of un 96.0 0.059 1.3E-06 43.9 8.9 107 176-314 3-110 (118)
171 TIGR02180 GRX_euk Glutaredoxin 95.8 0.03 6.4E-07 41.7 6.0 23 185-208 1-23 (84)
172 PF13911 AhpC-TSA_2: AhpC/TSA 95.2 0.13 2.8E-06 41.1 8.3 87 204-300 2-112 (115)
173 KOG0191 Thioredoxin/protein di 94.8 0.089 1.9E-06 51.3 7.4 91 181-316 162-252 (383)
174 KOG4277 Uncharacterized conser 94.8 0.05 1.1E-06 51.0 5.2 84 181-310 43-126 (468)
175 PF06110 DUF953: Eukaryotic pr 94.7 0.044 9.5E-07 44.8 4.1 43 179-226 17-66 (119)
176 TIGR03143 AhpF_homolog putativ 94.5 0.22 4.8E-06 51.0 9.7 79 181-312 476-554 (555)
177 cd02972 DsbA_family DsbA famil 93.9 0.08 1.7E-06 39.7 3.8 82 185-271 1-86 (98)
178 cd02976 NrdH NrdH-redoxin (Nrd 93.8 0.36 7.8E-06 34.2 7.2 21 185-206 2-22 (73)
179 PRK11200 grxA glutaredoxin 1; 93.8 0.2 4.4E-06 37.8 5.9 37 185-227 3-39 (85)
180 PRK10954 periplasmic protein d 93.6 0.42 9E-06 42.5 8.6 33 180-213 36-71 (207)
181 COG4545 Glutaredoxin-related p 93.6 0.34 7.4E-06 36.2 6.4 63 186-271 5-67 (85)
182 PF13462 Thioredoxin_4: Thiore 92.5 0.29 6.3E-06 40.9 5.6 51 173-226 4-54 (162)
183 KOG3425 Uncharacterized conser 92.3 0.3 6.5E-06 39.8 5.0 42 180-226 24-73 (128)
184 PRK15317 alkyl hydroperoxide r 92.1 0.87 1.9E-05 46.2 9.5 85 177-314 112-196 (517)
185 COG1651 DsbG Protein-disulfide 91.6 1.5 3.2E-05 39.7 9.5 46 167-213 70-115 (244)
186 PF00462 Glutaredoxin: Glutare 91.4 0.41 8.8E-06 33.4 4.5 20 185-205 1-20 (60)
187 PF02114 Phosducin: Phosducin; 91.4 0.5 1.1E-05 44.0 6.2 89 180-318 145-236 (265)
188 KOG0911 Glutaredoxin-related p 90.4 0.22 4.9E-06 44.8 2.8 31 180-211 16-46 (227)
189 PLN03098 LPA1 LOW PSII ACCUMUL 90.3 7.2 0.00016 38.9 13.4 131 163-312 278-441 (453)
190 TIGR03140 AhpF alkyl hydropero 90.3 1.7 3.8E-05 44.0 9.5 85 177-314 113-197 (515)
191 cd03419 GRX_GRXh_1_2_like Glut 89.9 1.1 2.3E-05 33.0 5.8 22 185-207 2-23 (82)
192 cd02066 GRX_family Glutaredoxi 88.0 0.88 1.9E-05 31.9 4.0 22 185-207 2-23 (72)
193 KOG0913 Thiol-disulfide isomer 87.8 0.31 6.7E-06 44.2 1.8 43 184-228 42-84 (248)
194 TIGR02181 GRX_bact Glutaredoxi 87.6 1.6 3.6E-05 32.0 5.4 21 185-206 1-21 (79)
195 cd03032 ArsC_Spx Arsenate Redu 86.8 1.3 2.8E-05 35.6 4.8 52 186-248 3-54 (115)
196 cd03418 GRX_GRXb_1_3_like Glut 86.5 1.7 3.6E-05 31.4 4.9 46 185-244 2-47 (75)
197 TIGR02183 GRXA Glutaredoxin, G 85.8 2.3 4.9E-05 32.2 5.5 24 185-209 2-25 (86)
198 cd02977 ArsC_family Arsenate R 85.7 1.1 2.4E-05 35.2 3.8 50 186-246 2-51 (105)
199 PF11009 DUF2847: Protein of u 85.7 5.3 0.00012 31.9 7.6 85 180-307 18-103 (105)
200 cd03027 GRX_DEP Glutaredoxin ( 85.5 1.4 3.1E-05 31.9 4.1 21 185-206 3-23 (73)
201 TIGR02194 GlrX_NrdH Glutaredox 85.5 4.4 9.6E-05 29.3 6.7 20 186-206 2-21 (72)
202 PHA03050 glutaredoxin; Provisi 85.3 2.1 4.6E-05 34.1 5.3 22 185-207 15-36 (108)
203 PRK01655 spxA transcriptional 85.0 1.5 3.1E-05 36.3 4.3 52 185-247 2-53 (131)
204 cd03036 ArsC_like Arsenate Red 84.6 1.2 2.7E-05 35.5 3.6 51 186-247 2-52 (111)
205 TIGR00365 monothiol glutaredox 83.1 3.6 7.7E-05 32.0 5.6 27 180-207 10-40 (97)
206 TIGR02189 GlrX-like_plant Glut 83.0 2.7 5.8E-05 32.9 4.9 22 185-207 10-31 (99)
207 TIGR03143 AhpF_homolog putativ 82.7 7.2 0.00016 40.0 9.2 31 177-208 362-392 (555)
208 PRK12559 transcriptional regul 82.0 2.8 6E-05 34.7 4.8 52 185-247 2-53 (131)
209 PF06053 DUF929: Domain of unk 81.9 5.6 0.00012 36.7 7.2 33 179-212 56-88 (249)
210 KOG4498 Uncharacterized conser 81.7 5.4 0.00012 35.1 6.6 54 167-222 35-90 (197)
211 TIGR02190 GlrX-dom Glutaredoxi 80.5 4.7 0.0001 29.8 5.2 24 182-206 7-30 (79)
212 PF01216 Calsequestrin: Calseq 80.4 11 0.00025 36.3 8.9 45 257-317 101-145 (383)
213 TIGR01617 arsC_related transcr 80.3 1.5 3.2E-05 35.4 2.6 51 186-247 2-52 (117)
214 cd03028 GRX_PICOT_like Glutare 80.0 5.1 0.00011 30.5 5.4 27 180-207 6-36 (90)
215 cd03035 ArsC_Yffb Arsenate Red 78.7 5.1 0.00011 31.7 5.2 48 186-244 2-49 (105)
216 COG1331 Highly conserved prote 78.3 17 0.00037 38.1 10.0 23 179-202 41-63 (667)
217 KOG2507 Ubiquitin regulatory p 75.5 22 0.00047 35.3 9.3 34 284-317 79-112 (506)
218 COG0695 GrxC Glutaredoxin and 75.3 14 0.0003 27.6 6.5 32 185-225 3-34 (80)
219 cd02983 P5_C P5 family, C-term 75.1 7.9 0.00017 31.8 5.6 92 182-317 21-116 (130)
220 PRK10638 glutaredoxin 3; Provi 74.9 7.6 0.00016 28.9 5.0 22 185-207 4-25 (83)
221 cd03029 GRX_hybridPRX5 Glutare 74.5 8.7 0.00019 27.6 5.1 21 185-206 3-23 (72)
222 COG3054 Predicted transcriptio 72.3 27 0.00059 29.8 8.0 126 173-319 51-182 (184)
223 KOG0914 Thioredoxin-like prote 71.5 5.4 0.00012 36.1 3.9 34 180-214 143-176 (265)
224 PF13848 Thioredoxin_6: Thiore 71.1 14 0.00031 31.1 6.5 29 284-312 153-182 (184)
225 PRK13344 spxA transcriptional 71.1 8.1 0.00018 31.9 4.7 52 186-248 3-54 (132)
226 COG1393 ArsC Arsenate reductas 70.3 12 0.00027 30.3 5.5 67 185-265 3-69 (117)
227 PRK10329 glutaredoxin-like pro 69.4 15 0.00034 27.4 5.6 20 185-205 3-22 (81)
228 PRK10824 glutaredoxin-4; Provi 69.3 11 0.00025 30.4 5.1 27 180-207 13-43 (115)
229 PHA03075 glutaredoxin-like pro 69.2 22 0.00048 28.9 6.5 30 182-212 2-31 (123)
230 cd03073 PDI_b'_ERp72_ERp57 PDI 68.8 27 0.00058 27.8 7.2 43 259-312 64-107 (111)
231 KOG2603 Oligosaccharyltransfer 67.0 1E+02 0.0022 29.5 11.4 51 163-214 42-96 (331)
232 KOG3414 Component of the U4/U6 67.0 73 0.0016 26.4 10.1 33 180-213 22-54 (142)
233 PF01323 DSBA: DSBA-like thior 63.7 9.9 0.00021 32.5 4.0 41 184-228 1-41 (193)
234 PF00448 SRP54: SRP54-type pro 61.9 77 0.0017 27.8 9.4 60 184-251 3-63 (196)
235 cd03072 PDI_b'_ERp44 PDIb' fam 61.0 31 0.00068 27.4 6.2 31 286-316 77-108 (111)
236 PF06491 Disulph_isomer: Disul 59.9 27 0.00059 29.0 5.6 33 287-319 99-135 (136)
237 PRK10026 arsenate reductase; P 59.0 22 0.00047 29.9 5.1 52 185-247 4-55 (141)
238 TIGR03759 conj_TIGR03759 integ 57.1 21 0.00046 31.7 4.8 55 182-248 109-163 (200)
239 PRK08294 phenol 2-monooxygenas 55.9 1.1E+02 0.0024 32.0 10.8 147 150-315 460-630 (634)
240 cd02979 PHOX_C FAD-dependent P 55.1 1.3E+02 0.0029 25.6 10.2 47 163-212 6-56 (167)
241 PTZ00062 glutaredoxin; Provisi 53.9 30 0.00064 30.9 5.4 26 180-206 111-140 (204)
242 KOG1752 Glutaredoxin and relat 52.0 32 0.0007 27.3 4.8 50 181-243 13-62 (104)
243 cd03034 ArsC_ArsC Arsenate Red 48.8 25 0.00054 27.9 3.7 51 186-247 2-52 (112)
244 TIGR02742 TrbC_Ftype type-F co 47.0 1.6E+02 0.0036 24.3 8.7 14 258-271 61-74 (130)
245 cd03033 ArsC_15kD Arsenate Red 45.6 56 0.0012 26.2 5.3 48 186-244 3-50 (113)
246 cd01820 PAF_acetylesterase_lik 45.3 2.1E+02 0.0045 24.9 9.8 49 179-228 88-138 (214)
247 TIGR03677 rpl7ae 50S ribosomal 44.8 1.6E+02 0.0036 23.6 8.4 73 219-320 43-117 (117)
248 PRK06975 bifunctional uroporph 42.0 99 0.0021 32.6 7.9 25 104-128 317-342 (656)
249 KOG3363 Uncharacterized conser 41.8 94 0.002 26.9 6.2 60 189-250 86-146 (196)
250 PRK01018 50S ribosomal protein 41.7 1.3E+02 0.0027 23.5 6.7 46 218-266 32-77 (99)
251 cd03024 DsbA_FrnE DsbA family, 41.0 54 0.0012 28.2 5.0 41 187-228 3-43 (201)
252 KOG4614 Inner membrane protein 40.7 50 0.0011 30.3 4.6 26 285-310 250-275 (287)
253 PF09822 ABC_transp_aux: ABC-t 39.3 3E+02 0.0065 25.1 11.2 63 182-247 25-88 (271)
254 TIGR00014 arsC arsenate reduct 39.3 62 0.0013 25.8 4.7 50 186-246 2-51 (114)
255 PRK06183 mhpA 3-(3-hydroxyphen 38.7 1.9E+02 0.004 29.4 9.2 35 152-188 410-445 (538)
256 PF05228 CHASE4: CHASE4 domain 38.2 48 0.001 27.3 4.1 13 286-298 53-65 (161)
257 PF00352 TBP: Transcription fa 38.1 1.1E+02 0.0023 23.1 5.6 61 258-320 22-83 (86)
258 COG3011 Predicted thiol-disulf 38.1 1.1E+02 0.0025 25.5 6.1 39 180-225 5-43 (137)
259 KOG1672 ATP binding protein [P 36.8 2.5E+02 0.0053 25.1 8.2 73 180-301 83-155 (211)
260 PRK07033 hypothetical protein; 36.5 1.9E+02 0.0042 28.8 8.6 36 189-225 318-353 (427)
261 PF03960 ArsC: ArsC family; I 36.3 51 0.0011 25.9 3.7 52 188-250 1-52 (110)
262 PF01106 NifU: NifU-like domai 36.2 76 0.0016 23.0 4.3 44 169-214 14-58 (68)
263 COG3322 Predicted periplasmic 35.7 42 0.00092 31.8 3.6 14 286-299 107-120 (295)
264 PRK08132 FAD-dependent oxidore 35.7 3.7E+02 0.008 27.3 10.8 117 152-314 426-543 (547)
265 PF07449 HyaE: Hydrogenase-1 e 35.2 88 0.0019 25.0 4.8 39 254-307 68-106 (107)
266 cd03025 DsbA_FrnE_like DsbA fa 34.5 59 0.0013 27.6 4.2 39 185-226 3-41 (193)
267 cd03069 PDI_b_ERp57 PDIb famil 34.3 2.1E+02 0.0047 22.0 7.0 46 218-266 19-64 (104)
268 PTZ00106 60S ribosomal protein 34.2 1.8E+02 0.004 23.1 6.6 46 218-266 41-86 (108)
269 PRK10853 putative reductase; P 34.2 76 0.0016 25.6 4.4 50 185-245 2-51 (118)
270 PRK06683 hypothetical protein; 34.0 1.3E+02 0.0029 22.6 5.5 47 218-268 27-73 (82)
271 PRK08564 5'-methylthioadenosin 32.7 4.1E+02 0.0089 24.7 11.5 68 197-270 138-208 (267)
272 TIGR01616 nitro_assoc nitrogen 32.6 1.3E+02 0.0028 24.6 5.6 50 184-244 2-51 (126)
273 PRK13601 putative L7Ae-like ri 32.0 1.7E+02 0.0037 22.1 5.8 46 218-267 24-69 (82)
274 COG1512 Beta-propeller domains 31.3 2.2E+02 0.0048 26.6 7.5 42 198-243 45-86 (271)
275 COG2332 CcmE Cytochrome c-type 30.8 51 0.0011 28.0 2.9 21 107-127 3-23 (153)
276 COG2179 Predicted hydrolase of 30.7 1.2E+02 0.0026 26.4 5.2 79 182-267 29-109 (175)
277 TIGR01352 tonB_Cterm TonB fami 29.6 75 0.0016 22.4 3.4 34 286-319 15-49 (74)
278 PRK10893 lipopolysaccharide ex 29.6 98 0.0021 27.3 4.7 21 112-132 5-25 (192)
279 smart00775 LNS2 LNS2 domain. T 29.4 59 0.0013 27.5 3.2 37 245-296 119-155 (157)
280 PRK13602 putative ribosomal pr 29.3 1.8E+02 0.0038 21.8 5.5 45 218-266 27-71 (82)
281 PF02966 DIM1: Mitosis protein 29.1 1.2E+02 0.0026 25.3 4.7 33 180-213 19-51 (133)
282 PRK07714 hypothetical protein; 28.8 2.3E+02 0.0051 21.9 6.3 45 218-266 34-78 (100)
283 PRK08455 fliL flagellar basal 27.8 1.3E+02 0.0029 26.2 5.2 11 118-128 27-37 (182)
284 PF08806 Sep15_SelM: Sep15/Sel 27.7 77 0.0017 23.7 3.2 35 281-315 40-75 (78)
285 cd07297 PX_PLD2 The phosphoino 26.9 61 0.0013 26.8 2.7 24 5-28 39-62 (130)
286 PRK10714 undecaprenyl phosphat 26.5 3.6E+02 0.0078 25.5 8.4 33 217-249 37-69 (325)
287 cd03051 GST_N_GTT2_like GST_N 26.3 1.6E+02 0.0034 20.3 4.6 31 187-226 3-33 (74)
288 PF13462 Thioredoxin_4: Thiore 26.0 1.3E+02 0.0028 24.6 4.7 38 257-314 125-162 (162)
289 PF01323 DSBA: DSBA-like thior 26.0 1.2E+02 0.0026 25.6 4.6 63 231-312 121-192 (193)
290 PRK04175 rpl7ae 50S ribosomal 25.9 3.6E+02 0.0078 21.8 8.5 45 219-267 47-92 (122)
291 PRK13600 putative ribosomal pr 25.7 2.3E+02 0.0051 21.5 5.5 57 204-267 18-74 (84)
292 KOG2961 Predicted hydrolase (H 25.4 2.8E+02 0.006 24.0 6.4 81 163-246 24-111 (190)
293 PF01248 Ribosomal_L7Ae: Ribos 25.3 2.2E+02 0.0047 21.4 5.5 57 205-268 21-78 (95)
294 PF03259 Robl_LC7: Roadblock/L 25.2 1.4E+02 0.0031 21.7 4.4 13 286-298 18-30 (91)
295 PF09673 TrbC_Ftype: Type-F co 25.1 3.5E+02 0.0076 21.5 7.6 14 258-271 61-74 (113)
296 PRK11889 flhF flagellar biosyn 25.1 7.1E+02 0.015 25.0 10.6 60 183-250 242-302 (436)
297 PRK10920 putative uroporphyrin 24.5 1.4E+02 0.003 29.5 5.1 27 104-130 30-57 (390)
298 PF06953 ArsD: Arsenical resis 24.2 4E+02 0.0086 21.8 8.6 30 198-228 23-52 (123)
299 cd03060 GST_N_Omega_like GST_N 24.2 1.2E+02 0.0025 21.3 3.6 30 187-225 3-32 (71)
300 PRK10834 vancomycin high tempe 24.1 5.6E+02 0.012 23.5 10.0 47 197-246 63-112 (239)
301 PRK02048 4-hydroxy-3-methylbut 24.0 3.9E+02 0.0085 28.0 8.4 23 191-214 519-541 (611)
302 PF05768 DUF836: Glutaredoxin- 24.0 69 0.0015 23.6 2.4 36 185-227 2-37 (81)
303 PRK07021 fliL flagellar basal 23.8 4.2E+02 0.0091 22.4 7.5 23 166-188 61-85 (162)
304 PRK00025 lpxB lipid-A-disaccha 23.8 5.2E+02 0.011 24.3 9.0 84 181-271 185-269 (380)
305 PLN02705 beta-amylase 23.7 1.6E+02 0.0034 30.9 5.4 13 284-296 354-366 (681)
306 COG2237 Predicted membrane pro 23.7 1.7E+02 0.0038 28.4 5.5 46 205-251 54-105 (364)
307 cd06844 STAS Sulphate Transpor 23.3 3E+02 0.0064 20.8 6.0 53 181-244 39-91 (100)
308 PRK00394 transcription factor; 23.2 2.8E+02 0.0061 24.1 6.4 41 278-320 133-173 (179)
309 PRK12569 hypothetical protein; 23.0 4E+02 0.0087 24.6 7.5 75 233-318 129-204 (245)
310 PRK07718 fliL flagellar basal 22.9 2.4E+02 0.0051 23.5 5.6 14 173-188 56-69 (142)
311 PF03544 TonB_C: Gram-negative 22.9 36 0.00079 24.5 0.6 33 286-318 21-54 (79)
312 cd03031 GRX_GRX_like Glutaredo 22.9 2.1E+02 0.0045 24.1 5.3 15 192-207 15-29 (147)
313 PRK05583 ribosomal protein L7A 22.8 3.1E+02 0.0066 21.6 6.0 44 218-265 33-76 (104)
314 PF04123 DUF373: Domain of unk 22.8 2.5E+02 0.0055 27.2 6.5 54 205-259 54-113 (344)
315 PRK12785 fliL flagellar basal 22.7 2.2E+02 0.0048 24.3 5.6 21 168-188 70-93 (166)
316 PF12273 RCR: Chitin synthesis 22.6 45 0.00097 27.3 1.2 17 114-130 2-18 (130)
317 PF13848 Thioredoxin_6: Thiore 22.4 2.4E+02 0.0052 23.4 5.8 42 258-315 31-74 (184)
318 PF10673 DUF2487: Protein of u 22.1 2.3E+02 0.0049 23.9 5.3 48 178-228 47-95 (142)
319 PF07476 MAAL_C: Methylasparta 21.7 3.1E+02 0.0067 25.1 6.3 49 197-249 118-166 (248)
320 PF04278 Tic22: Tic22-like fam 21.7 1.4E+02 0.003 27.9 4.4 58 162-227 76-136 (274)
321 PRK12759 bifunctional gluaredo 21.6 88 0.0019 30.9 3.2 32 185-227 4-35 (410)
322 PF02563 Poly_export: Polysacc 21.2 1E+02 0.0022 22.9 2.8 34 286-319 32-70 (82)
323 KOG2027 Spindle pole body prot 21.0 30 0.00064 34.1 -0.3 80 186-273 87-166 (388)
324 PRK00366 ispG 4-hydroxy-3-meth 20.9 1.3E+02 0.0029 29.2 4.1 30 286-319 327-356 (360)
325 PF14155 DUF4307: Domain of un 20.8 1E+02 0.0022 24.7 2.9 21 109-129 3-23 (112)
326 KOG4175 Tryptophan synthase al 20.6 3.6E+02 0.0077 24.4 6.4 24 231-254 135-158 (268)
327 cd08344 MhqB_like_N N-terminal 20.5 3.2E+02 0.0069 20.7 5.7 17 286-302 94-110 (112)
328 PF04375 HemX: HemX; InterPro 20.4 2.5E+02 0.0053 27.4 6.0 7 122-128 42-48 (372)
329 PF13103 TonB_2: TonB C termin 20.3 2.3E+02 0.0051 20.6 4.7 33 286-318 31-64 (85)
330 PF03746 LamB_YcsF: LamB/YcsF 20.3 3.1E+02 0.0066 25.3 6.2 104 197-317 86-200 (242)
331 PRK05406 LamB/YcsF family prot 20.1 4.1E+02 0.0089 24.5 7.0 75 233-318 126-203 (246)
No 1
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=100.00 E-value=8.4e-37 Score=272.28 Aligned_cols=215 Identities=56% Similarity=1.055 Sum_probs=185.2
Q ss_pred CCCCCCCCCchHHHHHHHHHHHHHHH---HhhcccchhhhHHHhhhhhhhccCCCCCCCCCCCCCeEEEcCCCCeeeccc
Q 020776 102 DTGKPIRGGPISWLSFLLLALTGAGI---IWYYDKEKEQHIEEINSASQAVKQGPSVGKAAIGGPFKLINHDGKNVTEKD 178 (321)
Q Consensus 102 ~~~~~~r~~p~~~l~~~ll~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~aP~p~f~l~d~~G~~vsLsd 178 (321)
+..++.|.+|..|..+++++++++++ +.++..++....+.... . ....+|.++.+++|+|.|.+|+.++-.|
T Consensus 62 ~~~~~~r~gp~~w~~~~~t~Alg~~~~g~~~Y~~~~k~~~~e~~r~--~---~~~~~gk~~iGGpF~L~d~~Gk~~te~d 136 (280)
T KOG2792|consen 62 ESGKPGRPGPFSWRSLLATFALGLGLGGALAYLKKEKARLLEKERE--S---ANRTAGKPAIGGPFSLVDHDGKRVTEKD 136 (280)
T ss_pred ccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--h---hhhhcCCCccCCceEEEecCCCeecccc
Confidence 34455556888888777655544443 34444444433322222 1 2278899999999999999999999999
Q ss_pred cCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHH
Q 020776 179 FLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIR 258 (321)
Q Consensus 179 ~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~ 258 (321)
|+|||+||||.+|+||+||++|+.+|.++.++++++.|..++.|+|++||++|+++.+++|+++|++....++|+.+++.
T Consensus 137 f~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk 216 (280)
T KOG2792|consen 137 FLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVK 216 (280)
T ss_pred cccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHH
Confidence 99999999999999999999999999999999999988888899999999999999999999999999999999999999
Q ss_pred HHHHHcCceEee-cCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHHHhC
Q 020776 259 NIARAYRVYYMK-TAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYKR 321 (321)
Q Consensus 259 ~~a~~ygv~~~p-~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~~kk 321 (321)
+++++|.|++.+ +.+++++|.|||+..+|||||+|+++.+|+.+.+.+++.+.|.+.+..+++
T Consensus 217 ~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~~y~~ 280 (280)
T KOG2792|consen 217 QVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVASYRS 280 (280)
T ss_pred HHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHHhccC
Confidence 999999999998 556689999999999999999999999999999999999999999988764
No 2
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.96 E-value=2e-27 Score=212.36 Aligned_cols=156 Identities=40% Similarity=0.791 Sum_probs=143.3
Q ss_pred CeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHH-
Q 020776 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVK- 241 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~- 241 (321)
+|+++|.+|+.+++.+++||++||+|.+|+||.||+.++..|.++++++.+..+.++++|+||+||++|+++.+++|++
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~ 128 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAEL 128 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcc
Confidence 7999999999999999999999999999999999999999999999999844488999999999999999999999999
Q ss_pred HhCCCceeecCChHHHHHHHHHcCceEeecCCCC-CCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 242 EFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEED-SDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 242 ~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~-~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
.++..|..++++.+...+++++|+|.+.+....+ .+|.++|+..+||||++|+++..+....+++++.++|++++++
T Consensus 129 ~~~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~~~ 206 (207)
T COG1999 129 NFDPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLLKE 206 (207)
T ss_pred cCCCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHhhc
Confidence 7788999999999999999999999985443333 5899999999999999999999987777789999999888763
No 3
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.95 E-value=1.5e-27 Score=207.86 Aligned_cols=140 Identities=44% Similarity=0.857 Sum_probs=126.4
Q ss_pred CCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHH
Q 020776 161 GGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYV 240 (321)
Q Consensus 161 ~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~ 240 (321)
.++|+|+|.+|+++++++++||++||+|.+|.||.+|+..+..|.++++++.++ +.++++|+||+||++|+++.+++|+
T Consensus 32 ~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~-~~~v~~v~ISvDP~~DTp~~L~~Y~ 110 (174)
T PF02630_consen 32 VPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEE-GKDVQFVFISVDPERDTPEVLKKYA 110 (174)
T ss_dssp SST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHT-TTTEEEEEEESSTTTC-HHHHHHHH
T ss_pred CCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhc-cCceEEEEEEeCCCCCCHHHHHHHH
Confidence 459999999999999999999999999999999999999999999999999987 7799999999999999999999999
Q ss_pred HHhCCCceeecCChHHHHHHHHHcCceEeecCC--CCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 241 KEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAE--EDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 241 ~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~--~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
+.++.+|..++++.+...++++.|++.+..... .+.+|.++|+..+|||||+|+|+..|..
T Consensus 111 ~~~~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 111 KKFGPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp HCHTTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred HhcCCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 999999999999999999999999998876433 4567999999999999999999998854
No 4
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.93 E-value=4.8e-25 Score=184.15 Aligned_cols=139 Identities=49% Similarity=0.940 Sum_probs=124.3
Q ss_pred CCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHH
Q 020776 162 GPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVK 241 (321)
Q Consensus 162 p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~ 241 (321)
|+|++.|.+|+.+++++++||++||+||++||+++|..+++.|++++++++++...++.+|+|+.|+..|+++.+++|++
T Consensus 3 p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~~~~~~~ 82 (142)
T cd02968 3 PDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEVLKAYAK 82 (142)
T ss_pred CceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHHHHHHHH
Confidence 49999999999999999999999999999999977999999999999999876113589999999998899999999999
Q ss_pred HhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeC
Q 020776 242 EFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFG 300 (321)
Q Consensus 242 ~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~ 300 (321)
+++.+|+++..+.+....+++.||+...+.......+.+.|.+.+||||++|+|+++|.
T Consensus 83 ~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 141 (142)
T cd02968 83 AFGPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYG 141 (142)
T ss_pred HhCCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeec
Confidence 99999999987766778999999999988754445577789999999999999999874
No 5
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.93 E-value=6.8e-25 Score=192.80 Aligned_cols=139 Identities=17% Similarity=0.161 Sum_probs=117.0
Q ss_pred CCCCCCCCCCCCeEEEcCC--CCeeecccc-CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 152 GPSVGKAAIGGPFKLINHD--GKNVTEKDF-LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~--G~~vsLsd~-kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
...+|+++| +|++.|.+ |+.++++++ +||++||+||++||++ |+.++|.|+++.+ + ++.+|+|++|
T Consensus 38 ~~~~g~~~p--~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~-C~~e~p~l~~l~~----~---~~~vi~v~~~- 106 (185)
T PRK15412 38 SALIGKPVP--KFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPT-CRAEHQYLNQLSA----Q---GIRVVGMNYK- 106 (185)
T ss_pred hhhcCCCCC--CcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHH-HHHHHHHHHHHHH----c---CCEEEEEECC-
Confidence 356788888 99999998 477777765 7999999999999998 9999999988753 2 4667888876
Q ss_pred CCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHH
Q 020776 229 ERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSL 308 (321)
Q Consensus 229 ~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l 308 (321)
|+.+.+++|+++++.+|+.+. .|....+.+.|++...|+ +||||++|+|++.+.|..+.+++
T Consensus 107 --~~~~~~~~~~~~~~~~~~~~~--~D~~~~~~~~~gv~~~P~--------------t~vid~~G~i~~~~~G~~~~~~l 168 (185)
T PRK15412 107 --DDRQKAISWLKELGNPYALSL--FDGDGMLGLDLGVYGAPE--------------TFLIDGNGIIRYRHAGDLNPRVW 168 (185)
T ss_pred --CCHHHHHHHHHHcCCCCceEE--EcCCccHHHhcCCCcCCe--------------EEEECCCceEEEEEecCCCHHHH
Confidence 557889999999999987532 455667888999988887 99999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 020776 309 ADGIIKEIKQY 319 (321)
Q Consensus 309 ~~~l~~~L~~~ 319 (321)
.+.|+.++++.
T Consensus 169 ~~~i~~~~~~~ 179 (185)
T PRK15412 169 ESEIKPLWEKY 179 (185)
T ss_pred HHHHHHHHHHH
Confidence 99999988765
No 6
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.91 E-value=3.3e-23 Score=184.22 Aligned_cols=153 Identities=9% Similarity=0.093 Sum_probs=118.9
Q ss_pred CCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC----C
Q 020776 153 PSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD----P 228 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D----p 228 (321)
...+..+| +|+++|.+|+.+++++++||+|||+||++||++ |..++|.|++++++|+++ ++.+|+|++| +
T Consensus 13 ~~~~~~~p--df~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~-C~~e~p~L~~l~~~~~~~---g~~vvgv~~~~~~~~ 86 (199)
T PTZ00056 13 DELRKSIY--DYTVKTLEGTTVPMSSLKNKVLMITNSASKCGL-TKKHVDQMNRLHSVFNPL---GLEILAFPTSQFLNQ 86 (199)
T ss_pred hhcCCCCC--ceEEECCCCCEEeHHHhCCCEEEEEEECCCCCC-hHHHHHHHHHHHHHHhcC---ceEEEEecchhccCC
Confidence 34455666 999999999999999999999999999999998 999999999999999876 5788899875 3
Q ss_pred CCCCHHHHHHHHHHhCCCceeecC---ChHHHHHHH--------HHcCceEeecCCCCCCcccccceEEEEEcCCCeEEE
Q 020776 229 ERDTVEQVREYVKEFHPKLIGLTG---SPDEIRNIA--------RAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVK 297 (321)
Q Consensus 229 ~~Dt~e~l~~~~~~~~~~~~~l~~---~~d~~~~~a--------~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~ 297 (321)
+.|+++.+++|+++++++|+++.. +.+....+. ..|++...+ ..+.+.+++||||++|+|++
T Consensus 87 e~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~-------~~i~~~~~tflID~~G~iv~ 159 (199)
T PTZ00056 87 EFPNTKDIRKFNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTL-------KAIGWNFGKFLVNKSGNVVA 159 (199)
T ss_pred CCCCHHHHHHHHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccC-------CccCCCCEEEEECCCCcEEE
Confidence 457889999999999999998731 001111222 223322111 12334457999999999999
Q ss_pred EeCCCCChhHHHHHHHHHHHH
Q 020776 298 FFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 298 ~~~~~~~~~~l~~~l~~~L~~ 318 (321)
++.+..+++++.+.|.+++++
T Consensus 160 ~~~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 160 YFSPRTEPLELEKKIAELLGV 180 (199)
T ss_pred EeCCCCCHHHHHHHHHHHHHH
Confidence 999988998998888888864
No 7
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.91 E-value=5.8e-23 Score=177.24 Aligned_cols=137 Identities=26% Similarity=0.333 Sum_probs=120.1
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC
Q 020776 151 QGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER 230 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~ 230 (321)
....+|+.+| +|++.+.+|+.+++++++||+++|+||++||++ |..+++.|+++++++.++ ++.+|+|+.|
T Consensus 33 ~~~~~g~~~p--~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~-C~~~~~~l~~~~~~~~~~---~~~vi~i~~d--- 103 (173)
T PRK03147 33 EKVQVGKEAP--NFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKP-CEKEMPYMNELYPKYKEK---GVEIIAVNVD--- 103 (173)
T ss_pred cccCCCCCCC--CcEeecCCCCEEeHHHcCCCEEEEEEECCcCHH-HHHHHHHHHHHHHHhhcC---CeEEEEEEcC---
Confidence 4577888888 999999999999999999999999999999997 999999999999999865 5888899987
Q ss_pred CCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 231 DTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
++.+.+++|+++++.+|+.+ .|....+.+.|++...|+ +|+||++|+|+..+.|..+.+++.+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~---~d~~~~~~~~~~v~~~P~--------------~~lid~~g~i~~~~~g~~~~~~l~~ 166 (173)
T PRK03147 104 ETELAVKNFVNRYGLTFPVA---IDKGRQVIDAYGVGPLPT--------------TFLIDKDGKVVKVITGEMTEEQLEE 166 (173)
T ss_pred CCHHHHHHHHHHhCCCceEE---ECCcchHHHHcCCCCcCe--------------EEEECCCCcEEEEEeCCCCHHHHHH
Confidence 45689999999999999988 566678899999988776 9999999999998888887766555
Q ss_pred HHH
Q 020776 311 GII 313 (321)
Q Consensus 311 ~l~ 313 (321)
.+.
T Consensus 167 ~l~ 169 (173)
T PRK03147 167 YLE 169 (173)
T ss_pred HHH
Confidence 444
No 8
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.90 E-value=1.4e-23 Score=190.52 Aligned_cols=158 Identities=15% Similarity=0.188 Sum_probs=119.0
Q ss_pred CCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC----
Q 020776 153 PSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP---- 228 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp---- 228 (321)
..+|+.+| +|+++|.+|+.+++++++||++||+||++||++ |..++|.|++++++|+++ ++.+|+|++|.
T Consensus 73 ~~~g~~aP--dF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~-c~~e~p~L~~L~~~~~~~---Gv~VIgV~~d~~~~~ 146 (236)
T PLN02399 73 AATEKSVH--DFTVKDIDGKDVALSKFKGKVLLIVNVASKCGL-TSSNYSELSHLYEKYKTQ---GFEILAFPCNQFGGQ 146 (236)
T ss_pred hhcCCCCC--ceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcc-hHHHHHHHHHHHHHHhcC---CcEEEEEeccccccc
Confidence 34677777 999999999999999999999999999999998 999999999999999876 57788888763
Q ss_pred CCCCHHHHHHHH-HHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhH
Q 020776 229 ERDTVEQVREYV-KEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNS 307 (321)
Q Consensus 229 ~~Dt~e~l~~~~-~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~ 307 (321)
+.++.+++++|+ ++++.+|+++.........+...|++....... -....+.+.|++||||++|+|++++.+..++++
T Consensus 147 e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~-~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~ 225 (236)
T PLN02399 147 EPGSNPEIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGG-FLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQ 225 (236)
T ss_pred CCCCHHHHHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCC-ccCCccccCceEEEECCCCcEEEEECCCCCHHH
Confidence 236778999998 688999987631111111334444321100000 000123345679999999999999999999999
Q ss_pred HHHHHHHHHH
Q 020776 308 LADGIIKEIK 317 (321)
Q Consensus 308 l~~~l~~~L~ 317 (321)
+++.|+++|+
T Consensus 226 le~~I~~lL~ 235 (236)
T PLN02399 226 IEKDIQKLLA 235 (236)
T ss_pred HHHHHHHHhc
Confidence 9898888875
No 9
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.89 E-value=2.2e-23 Score=177.33 Aligned_cols=141 Identities=18% Similarity=0.222 Sum_probs=109.2
Q ss_pred CCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC----CCCCHHHHH
Q 020776 162 GPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP----ERDTVEQVR 237 (321)
Q Consensus 162 p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp----~~Dt~e~l~ 237 (321)
|+|+++|.+|+++++++++||+|||+||++||+ |..++|.|++++++|+++ ++.+|+|++|. +.|+++.++
T Consensus 3 ~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~--C~~e~p~l~~l~~~~~~~---~~~vv~v~~~~~~~~~~~~~~~~~ 77 (152)
T cd00340 3 YDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG--FTPQYEGLEALYEKYKDR---GLVVLGFPCNQFGGQEPGSNEEIK 77 (152)
T ss_pred ceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC--chHHHHHHHHHHHHhcCC---CEEEEEeccCccccCCCCCHHHHH
Confidence 499999999999999999999999999999998 999999999999999865 68889998764 346789999
Q ss_pred HHHHH-hCCCceeecCChHHHHH-HHHHcCc--eEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHH
Q 020776 238 EYVKE-FHPKLIGLTGSPDEIRN-IARAYRV--YYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADG 311 (321)
Q Consensus 238 ~~~~~-~~~~~~~l~~~~d~~~~-~a~~ygv--~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~ 311 (321)
+|+++ ++++|+++.. .|.... ..+.|++ ...|+.. .+.+.+.+++||||++|+|++++.|..+.+++.+.
T Consensus 78 ~f~~~~~~~~fp~~~d-~d~~~~~~~~~~~~~~~~~p~~~---~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 78 EFCETNYGVTFPMFAK-IDVNGENAHPLYKYLKEEAPGLL---GKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred HHHHHhcCCCceeeee-EeccCCCCChHHHHHHhcCCCCC---CCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 99997 7999998832 111111 3444542 3333200 12234566799999999999999999888766543
No 10
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.89 E-value=4.1e-23 Score=173.69 Aligned_cols=133 Identities=28% Similarity=0.353 Sum_probs=107.7
Q ss_pred CCCCCCCCCCeEEEc--CCCCeeeccccCCCeEEEEEecC-CCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC
Q 020776 154 SVGKAAIGGPFKLIN--HDGKNVTEKDFLGKWTVIYFGFT-HCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER 230 (321)
Q Consensus 154 ~vG~~aP~p~f~l~d--~~G~~vsLsd~kGK~vLL~Fwat-wCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~ 230 (321)
++|+++| +|++++ .+|+++++++++||++||+||++ |||+ |..++|.|++++++|+++ ++.+|+|+.+.+
T Consensus 1 k~G~~~P--~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~-C~~~~p~l~~l~~~~~~~---~v~~v~v~~~~~- 73 (146)
T PF08534_consen 1 KVGDKAP--DFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPP-CRKELPYLNELQEKYKDK---GVDVVGVSSDDD- 73 (146)
T ss_dssp STTSB----CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHH-HHHHHHHHHHHHHHHHTT---TCEEEEEEESSS-
T ss_pred CCCCCCC--CeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCc-chhhhhhHHhhhhhhccC---ceEEEEecccCC-
Confidence 4788998 999965 99999999999999999999999 9998 999999999999999876 577777887642
Q ss_pred CCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCC
Q 020776 231 DTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNND 304 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~ 304 (321)
..+.+|+++++.+|+++ .|....++++|++........+ ...|.+||||++|+|++.+.+..+
T Consensus 74 ---~~~~~~~~~~~~~~~~~---~D~~~~~~~~~~~~~~~~~~~~-----~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 74 ---PPVREFLKKYGINFPVL---SDPDGALAKALGVTIMEDPGNG-----FGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp ---HHHHHHHHHTTTTSEEE---EETTSHHHHHTTCEEECCTTTT-----SSSSEEEEEETTSBEEEEEESSBT
T ss_pred ---HHHHHHHHhhCCCceEE---echHHHHHHHhCCccccccccC-----CeecEEEEEECCCEEEEEEeCCCC
Confidence 23999999999999998 6777889999998833211000 133459999999999999866665
No 11
>PLN02412 probable glutathione peroxidase
Probab=99.89 E-value=6e-23 Score=177.67 Aligned_cols=152 Identities=14% Similarity=0.166 Sum_probs=113.1
Q ss_pred CCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC----CCCHHHH
Q 020776 161 GGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE----RDTVEQV 236 (321)
Q Consensus 161 ~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~----~Dt~e~l 236 (321)
.|+|+++|.+|+.+++++++||++||+||++||++ |..++|.|++++++|+++ ++.+|+|+.|+. .|+.+++
T Consensus 9 ~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~-c~~e~~~l~~l~~~~~~~---g~~vvgv~~~~~~~~~~~~~~~~ 84 (167)
T PLN02412 9 IYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGL-TDSNYKELNVLYEKYKEQ---GFEILAFPCNQFLGQEPGSNEEI 84 (167)
T ss_pred CCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCC-hHHHHHHHHHHHHHHhhC---CcEEEEecccccccCCCCCHHHH
Confidence 34999999999999999999999999999999998 999999999999999976 688899998742 2556666
Q ss_pred HHH-HHHhCCCceeecCChHHH-HHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 237 REY-VKEFHPKLIGLTGSPDEI-RNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 237 ~~~-~~~~~~~~~~l~~~~d~~-~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
.++ +++++++|+++.. .|.. ....+.|++...... +.....+...|++||||++|+|++++.+..+.+++.+.|.+
T Consensus 85 ~~~~~~~~~~~fpvl~~-~d~~g~~~~~~~~~~~~~~~-~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~ 162 (167)
T PLN02412 85 QQTVCTRFKAEFPIFDK-VDVNGKNTAPLYKYLKAEKG-GLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQN 162 (167)
T ss_pred HHHHHHccCCCCceEeE-EeeCCCCCCHHHHHHHhhCC-CCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHH
Confidence 555 6899999998731 0111 133344432110000 00000122345699999999999999999999999999988
Q ss_pred HHHH
Q 020776 315 EIKQ 318 (321)
Q Consensus 315 ~L~~ 318 (321)
+|++
T Consensus 163 ~l~~ 166 (167)
T PLN02412 163 LLGQ 166 (167)
T ss_pred HHhh
Confidence 8865
No 12
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.89 E-value=4.2e-22 Score=175.69 Aligned_cols=118 Identities=22% Similarity=0.247 Sum_probs=98.1
Q ss_pred cCCCCCCCCCCCCCeEEEcCCCCeeecc--ccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 150 KQGPSVGKAAIGGPFKLINHDGKNVTEK--DFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 150 ~~~~~vG~~aP~p~f~l~d~~G~~vsLs--d~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
..+..+|+++| +|+++|.+|+.++++ +++||+++|+||++|||+ |+.++|.++++++++ + +.+++|+.
T Consensus 43 ~~~~~vG~~aP--~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~-C~~~lp~l~~~~~~~----~--~~vv~Is~- 112 (189)
T TIGR02661 43 DHGPDVGDAAP--IFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPV-CDKLFPIIKSIARAE----E--TDVVMISD- 112 (189)
T ss_pred ccCCCCCCcCC--CcEecCCCCCEEeccchhcCCCEEEEEEECCCChh-HHHHHHHHHHHHHhc----C--CcEEEEeC-
Confidence 34678999988 999999999999994 579999999999999997 999999999987643 2 34566673
Q ss_pred CCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEE
Q 020776 228 PERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKF 298 (321)
Q Consensus 228 p~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~ 298 (321)
|+++++++|+++++++++.+. ...++.+.|++...|. +|+||++|+|++.
T Consensus 113 ---~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~y~v~~~P~--------------~~lID~~G~I~~~ 162 (189)
T TIGR02661 113 ---GTPAEHRRFLKDHELGGERYV----VSAEIGMAFQVGKIPY--------------GVLLDQDGKIRAK 162 (189)
T ss_pred ---CCHHHHHHHHHhcCCCcceee----chhHHHHhccCCccce--------------EEEECCCCeEEEc
Confidence 457899999999998875542 2367888999988776 8999999999986
No 13
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.89 E-value=1.2e-22 Score=176.64 Aligned_cols=138 Identities=15% Similarity=0.219 Sum_probs=114.0
Q ss_pred CCCCCCCCCCCCCeEEEcCCCC--eeecccc-CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 151 QGPSVGKAAIGGPFKLINHDGK--NVTEKDF-LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~l~d~~G~--~vsLsd~-kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
....+|+++| +|+++|.+|+ .++++++ +||+++|+||++||++ |+.++|.++++++ + ++.+|+|+.|
T Consensus 32 ~~~~vG~~ap--~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~-C~~~~p~l~~l~~----~---~~~vi~V~~~ 101 (173)
T TIGR00385 32 PSALIGKPVP--AFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPP-CRAEHPYLNELAK----D---GLPIVGVDYK 101 (173)
T ss_pred cchhcCCCCC--CccccccCCCCcccCHHHhcCCCEEEEEEECCcCHH-HHHHHHHHHHHHH----c---CCEEEEEECC
Confidence 3457888888 9999999997 4555675 7999999999999998 9999999988753 2 3677888875
Q ss_pred CCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhH
Q 020776 228 PERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNS 307 (321)
Q Consensus 228 p~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~ 307 (321)
+..+..++|+++++.+|+.+. .|....+++.|++...|+ +|+||++|+|++.+.|..+.++
T Consensus 102 ---~~~~~~~~~~~~~~~~f~~v~--~D~~~~~~~~~~v~~~P~--------------~~~id~~G~i~~~~~G~~~~~~ 162 (173)
T TIGR00385 102 ---DQSQNALKFLKELGNPYQAIL--IDPNGKLGLDLGVYGAPE--------------TFLVDGNGVILYRHAGPLNNEV 162 (173)
T ss_pred ---CChHHHHHHHHHcCCCCceEE--ECCCCchHHhcCCeeCCe--------------EEEEcCCceEEEEEeccCCHHH
Confidence 345777899999999887432 355577899999988887 9999999999999989999999
Q ss_pred HHHHHHHHHH
Q 020776 308 LADGIIKEIK 317 (321)
Q Consensus 308 l~~~l~~~L~ 317 (321)
+.+.+.+.++
T Consensus 163 l~~~l~~~~~ 172 (173)
T TIGR00385 163 WTEGFLPAME 172 (173)
T ss_pred HHHHHHHHhh
Confidence 9888888775
No 14
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=6.9e-22 Score=167.66 Aligned_cols=153 Identities=23% Similarity=0.330 Sum_probs=130.6
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEec-CCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGF-THCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER 230 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~Fwa-twCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~ 230 (321)
...+|+++| +|+|++.+|+.++|++++||+|||+|+. .++| .|..|+-.+++.+.+|++. +.++|+||.
T Consensus 3 ~l~~G~~aP--dF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~Tp-gCT~Ea~~Frd~~~ef~~~---~a~V~GIS~---- 72 (157)
T COG1225 3 MLKVGDKAP--DFELPDQDGETVSLSDLRGKPVVLYFYPKDFTP-GCTTEACDFRDLLEEFEKL---GAVVLGISP---- 72 (157)
T ss_pred cCCCCCcCC--CeEeecCCCCEEehHHhcCCcEEEEECCCCCCC-cchHHHHHHHHHHHHHHhC---CCEEEEEeC----
Confidence 467899999 9999999999999999999999999994 5566 5999999999999999865 788899995
Q ss_pred CCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 231 DTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
|+++..++|+++++++|+.+ +|..++++++||+.......+ ..| ....+.+||||++|+|++.+ .........+
T Consensus 73 Ds~~~~~~F~~k~~L~f~LL---SD~~~~v~~~ygv~~~k~~~g-k~~-~~~~R~TfvId~dG~I~~~~-~~v~~~~h~~ 146 (157)
T COG1225 73 DSPKSHKKFAEKHGLTFPLL---SDEDGEVAEAYGVWGEKKMYG-KEY-MGIERSTFVIDPDGKIRYVW-RKVKVKGHAD 146 (157)
T ss_pred CCHHHHHHHHHHhCCCceee---ECCcHHHHHHhCcccccccCc-ccc-ccccceEEEECCCCeEEEEe-cCCCCcccHH
Confidence 56899999999999999999 888999999999987654211 111 24567899999999999998 6777788888
Q ss_pred HHHHHHHHHh
Q 020776 311 GIIKEIKQYK 320 (321)
Q Consensus 311 ~l~~~L~~~k 320 (321)
++++.|+++.
T Consensus 147 ~vl~~l~~l~ 156 (157)
T COG1225 147 EVLAALKKLA 156 (157)
T ss_pred HHHHHHHHhc
Confidence 8888888764
No 15
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.88 E-value=4.2e-22 Score=169.38 Aligned_cols=149 Identities=23% Similarity=0.320 Sum_probs=117.5
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCC-CCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTH-CPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER 230 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~Fwatw-Cp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~ 230 (321)
...+|+++| +|+++|.+|+.+++++++||++||+||++| || .|..+++.|++++++++++ ++++|+|+.|
T Consensus 3 ~~~~g~~~p--~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p-~C~~~~~~l~~~~~~~~~~---~v~vi~Is~d--- 73 (154)
T PRK09437 3 PLKAGDIAP--KFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTP-GCTVQACGLRDNMDELKKA---GVVVLGISTD--- 73 (154)
T ss_pred cCCCCCcCC--CcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCC-chHHHHHHHHHHHHHHHHC---CCEEEEEcCC---
Confidence 456788888 999999999999999999999999999875 66 4999999999999999876 5788889865
Q ss_pred CCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 231 DTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
+++.+++|+++++.+|+++ .|..+.++++||+.+.+.... ..|...| +++||||++|+|++.+.+....+ ..+
T Consensus 74 -~~~~~~~~~~~~~~~~~~l---~D~~~~~~~~~gv~~~~~~~~-~~~~~~~-~~~~lid~~G~i~~~~~g~~~~~-~~~ 146 (154)
T PRK09437 74 -KPEKLSRFAEKELLNFTLL---SDEDHQVAEQFGVWGEKKFMG-KTYDGIH-RISFLIDADGKIEHVFDKFKTSN-HHD 146 (154)
T ss_pred -CHHHHHHHHHHhCCCCeEE---ECCCchHHHHhCCCccccccc-ccccCcc-eEEEEECCCCEEEEEEcCCCcch-hHH
Confidence 5699999999999999998 455678999999987654221 1232223 46899999999999987644333 333
Q ss_pred HHHHHH
Q 020776 311 GIIKEI 316 (321)
Q Consensus 311 ~l~~~L 316 (321)
++++.+
T Consensus 147 ~~~~~~ 152 (154)
T PRK09437 147 VVLDYL 152 (154)
T ss_pred HHHHHH
Confidence 344433
No 16
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.88 E-value=2.5e-22 Score=163.55 Aligned_cols=123 Identities=28% Similarity=0.404 Sum_probs=107.9
Q ss_pred CCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecC-CCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCH
Q 020776 155 VGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFT-HCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTV 233 (321)
Q Consensus 155 vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~Fwat-wCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~ 233 (321)
||+++| +|++++.+|+.+++++++||++||+||++ ||+. |..+++.|++++++|+++ ++.+|+|+.| +.
T Consensus 1 vG~~~P--~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~-c~~~l~~l~~~~~~~~~~---~~~vi~is~d----~~ 70 (124)
T PF00578_consen 1 VGDKAP--DFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPF-CQAELPELNELYKKYKDK---GVQVIGISTD----DP 70 (124)
T ss_dssp TTSBGG--CEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHH-HHHHHHHHHHHHHHHHTT---TEEEEEEESS----SH
T ss_pred CcCCCC--CcEeECCCCCEEEHHHHCCCcEEEEEeCccCccc-cccchhHHHHHhhhhccc---eEEeeecccc----cc
Confidence 688999 99999999999999999999999999999 9997 999999999999999976 7888999965 46
Q ss_pred HHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEE
Q 020776 234 EQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKF 298 (321)
Q Consensus 234 e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~ 298 (321)
+.+++|.++++.+|+++ .|....+++.|++.... .....|.+||||++|+|+++
T Consensus 71 ~~~~~~~~~~~~~~~~~---~D~~~~~~~~~~~~~~~--------~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 71 EEIKQFLEEYGLPFPVL---SDPDGELAKAFGIEDEK--------DTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHHHHHHHTCSSEEE---EETTSHHHHHTTCEETT--------TSEESEEEEEEETTSBEEEE
T ss_pred cchhhhhhhhccccccc---cCcchHHHHHcCCcccc--------CCceEeEEEEECCCCEEEeC
Confidence 89999999999999999 77788999999998322 01233459999999999974
No 17
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.88 E-value=3e-22 Score=170.51 Aligned_cols=140 Identities=14% Similarity=0.229 Sum_probs=107.5
Q ss_pred CeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC----CCCCCHHHHHH
Q 020776 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD----PERDTVEQVRE 238 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D----p~~Dt~e~l~~ 238 (321)
+|+++|.+|+++++++++||++||+||++|||+ |..++|.|++++++|+++ ++.+|+|+.+ .+.|+++.+++
T Consensus 4 ~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~-c~~~~~~l~~l~~~~~~~---~~~v~~i~~~~~~~~~~d~~~~~~~ 79 (153)
T TIGR02540 4 SFEVKDARGRTVSLEKYRGKVSLVVNVASECGF-TDQNYRALQELHRELGPS---HFNVLAFPCNQFGESEPDSSKEIES 79 (153)
T ss_pred cceeECCCCCEecHHHhCCCEEEEEEeCCCCCc-hhhhHHHHHHHHHHHhhC---CeEEEEEeccccccCCCCCHHHHHH
Confidence 799999999999999999999999999999998 999999999999999876 6888888852 12477899999
Q ss_pred HHHH-hCCCceeecCC--hHHHHHHHHHcCce---EeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHH
Q 020776 239 YVKE-FHPKLIGLTGS--PDEIRNIARAYRVY---YMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 239 ~~~~-~~~~~~~l~~~--~d~~~~~a~~ygv~---~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
|+++ ++++|+.+... .+.....+..|.+. ..|+ ...++||||++|+|++.+.+..+.+++...|
T Consensus 80 f~~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~----------~~~~tflID~~G~v~~~~~g~~~~~~l~~~i 149 (153)
T TIGR02540 80 FARRNYGVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPR----------WNFWKYLVNPEGQVVKFWRPEEPVEEIRPEI 149 (153)
T ss_pred HHHHhcCCCCCccceEecCCCCCCcHHHHHHhcCCCCCC----------CccEEEEEcCCCcEEEEECCCCCHHHHHHHH
Confidence 9986 89999887310 01111111122221 1121 1234899999999999999999998888887
Q ss_pred HHHH
Q 020776 313 IKEI 316 (321)
Q Consensus 313 ~~~L 316 (321)
++++
T Consensus 150 ~~l~ 153 (153)
T TIGR02540 150 TALV 153 (153)
T ss_pred HHhC
Confidence 7653
No 18
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.88 E-value=6.3e-22 Score=171.33 Aligned_cols=139 Identities=23% Similarity=0.280 Sum_probs=117.7
Q ss_pred CCCCCCCCeEEEcCCCCeeecccc-CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC----
Q 020776 156 GKAAIGGPFKLINHDGKNVTEKDF-LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER---- 230 (321)
Q Consensus 156 G~~aP~p~f~l~d~~G~~vsLsd~-kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~---- 230 (321)
|+++| +|++.+.+|+.++++++ +||++||+||++|||. |..+++.|++++++|+++ ++.+|+|++|+..
T Consensus 1 g~~~p--~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~-c~~~~~~l~~l~~~~~~~---~v~~v~is~d~~~~~~~ 74 (171)
T cd02969 1 GSPAP--DFSLPDTDGKTYSLADFADGKALVVMFICNHCPY-VKAIEDRLNRLAKEYGAK---GVAVVAINSNDIEAYPE 74 (171)
T ss_pred CCcCC--CccccCCCCCEEeHHHHhCCCEEEEEEECCCCcc-HHHHHHHHHHHHHHHhhC---CeEEEEEecCccccccc
Confidence 45666 99999999999999998 8999999999999997 999999999999999865 6888999998753
Q ss_pred CCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeC---------C
Q 020776 231 DTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFG---------K 301 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~---------~ 301 (321)
|+++.+++|+++++.+|+++ .|....+++.|++...|. +||||++|+|++... .
T Consensus 75 d~~~~~~~~~~~~~~~~~~l---~D~~~~~~~~~~v~~~P~--------------~~lid~~G~v~~~~~~~~~~~~~~~ 137 (171)
T cd02969 75 DSPENMKAKAKEHGYPFPYL---LDETQEVAKAYGAACTPD--------------FFLFDPDGKLVYRGRIDDSRPGNDP 137 (171)
T ss_pred cCHHHHHHHHHHCCCCceEE---ECCchHHHHHcCCCcCCc--------------EEEECCCCeEEEeecccCCcccccc
Confidence 78999999999999999999 566678899999987776 999999999998742 1
Q ss_pred CCChhHHHHHHHHHHH
Q 020776 302 NNDVNSLADGIIKEIK 317 (321)
Q Consensus 302 ~~~~~~l~~~l~~~L~ 317 (321)
..+.+++.+.|..++.
T Consensus 138 ~~~~~~~~~~i~~~l~ 153 (171)
T cd02969 138 PVTGRDLRAALDALLA 153 (171)
T ss_pred cccHHHHHHHHHHHHc
Confidence 2344566666666654
No 19
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.88 E-value=1.1e-21 Score=169.84 Aligned_cols=131 Identities=20% Similarity=0.217 Sum_probs=108.5
Q ss_pred cCCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCC-CCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 150 KQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTH-CPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 150 ~~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~Fwatw-Cp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
.....+|+++| +|++.|.+|+.+++++++||++||+||++| |++ |..|++.|+++++++. ++.+|+||.|
T Consensus 15 ~~~~~~G~~~P--~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~-C~~e~~~l~~~~~~~~-----~~~vv~vs~D- 85 (167)
T PRK00522 15 GSLPQVGDKAP--DFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGV-CATSVRKFNQEAAELD-----NTVVLCISAD- 85 (167)
T ss_pred CCCCCCCCCCC--CeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCc-cHHHHHHHHHHHHHcC-----CcEEEEEeCC-
Confidence 34567899999 999999999999999999999999999999 887 9999999999998883 4778889865
Q ss_pred CCCCHHHHHHHHHHhCCC-ceeecCChH-HHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeC
Q 020776 229 ERDTVEQVREYVKEFHPK-LIGLTGSPD-EIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFG 300 (321)
Q Consensus 229 ~~Dt~e~l~~~~~~~~~~-~~~l~~~~d-~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~ 300 (321)
+++..++|++++++. ++.+ .| ..+.+++.||+...|.... -...+++||||++|+|++.+.
T Consensus 86 ---~~~~~~~f~~~~~~~~~~~l---sD~~~~~~~~~~gv~~~~~~~~-----g~~~r~tfvId~~G~I~~~~~ 148 (167)
T PRK00522 86 ---LPFAQKRFCGAEGLENVITL---SDFRDHSFGKAYGVAIAEGPLK-----GLLARAVFVLDENNKVVYSEL 148 (167)
T ss_pred ---CHHHHHHHHHhCCCCCceEe---ecCCccHHHHHhCCeecccccC-----CceeeEEEEECCCCeEEEEEE
Confidence 467889999999986 6777 55 4568999999987662110 113467999999999999874
No 20
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.88 E-value=7.4e-22 Score=171.47 Aligned_cols=128 Identities=20% Similarity=0.260 Sum_probs=104.2
Q ss_pred CCCCCCCCCeEEEcCCC----CeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC
Q 020776 155 VGKAAIGGPFKLINHDG----KNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE 229 (321)
Q Consensus 155 vG~~aP~p~f~l~d~~G----~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~ 229 (321)
+|+++| +|++++.+| +.+++++++||++||+|| ++||+. |..+++.|++++++|.++ ++.+|+||+|+.
T Consensus 1 vG~~aP--~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~-C~~~l~~l~~~~~~~~~~---~v~vv~Is~d~~ 74 (173)
T cd03015 1 VGKKAP--DFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFV-CPTEIIAFSDRYEEFKKL---NAEVLGVSTDSH 74 (173)
T ss_pred CCCcCC--CCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCc-CHHHHHHHHHHHHHHHHC---CCEEEEEecCCH
Confidence 578888 999999887 799999999999999999 899997 999999999999999876 577888998753
Q ss_pred CCCHHHHHHHHHH-------hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC
Q 020776 230 RDTVEQVREYVKE-------FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN 302 (321)
Q Consensus 230 ~Dt~e~l~~~~~~-------~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~ 302 (321)
+..+.|.+. .+++|+++ .|...++++.||+...+.. ...|++||||++|+|++.+.+.
T Consensus 75 ----~~~~~~~~~~~~~~~~~~~~f~~l---~D~~~~~~~~~gv~~~~~~--------~~~p~~~lID~~G~I~~~~~~~ 139 (173)
T cd03015 75 ----FSHLAWRNTPRKEGGLGKINFPLL---ADPKKKISRDYGVLDEEEG--------VALRGTFIIDPEGIIRHITVND 139 (173)
T ss_pred ----HHHHHHHHhhhhhCCccCcceeEE---ECCchhHHHHhCCccccCC--------ceeeEEEEECCCCeEEEEEecC
Confidence 455566665 35788888 6778899999998754310 1235699999999999998543
Q ss_pred C
Q 020776 303 N 303 (321)
Q Consensus 303 ~ 303 (321)
.
T Consensus 140 ~ 140 (173)
T cd03015 140 L 140 (173)
T ss_pred C
Confidence 3
No 21
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.87 E-value=1.4e-21 Score=164.65 Aligned_cols=142 Identities=20% Similarity=0.233 Sum_probs=114.1
Q ss_pred CCCCCCCCCCeEEEcCCCCeeeccccCC-CeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCC
Q 020776 154 SVGKAAIGGPFKLINHDGKNVTEKDFLG-KWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERD 231 (321)
Q Consensus 154 ~vG~~aP~p~f~l~d~~G~~vsLsd~kG-K~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~D 231 (321)
.+|+.+| +|++++.+|+.+++++++| |++||+|| ++||+. |..+++.|++++++++++ ++.+|+|+.|
T Consensus 2 ~~G~~~p--~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~-C~~~~~~l~~~~~~~~~~---~v~vi~vs~d---- 71 (149)
T cd03018 2 EVGDKAP--DFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPV-CTKELCALRDSLELFEAA---GAEVLGISVD---- 71 (149)
T ss_pred CCCCcCC--CcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCcc-HHHHHHHHHHHHHHHHhC---CCEEEEecCC----
Confidence 5788888 9999999999999999999 99999888 999997 999999999999999866 5778899965
Q ss_pred CHHHHHHHHHHhCCCceeecCChHHH--HHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHH
Q 020776 232 TVEQVREYVKEFHPKLIGLTGSPDEI--RNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLA 309 (321)
Q Consensus 232 t~e~l~~~~~~~~~~~~~l~~~~d~~--~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~ 309 (321)
+++.+++|+++++.+|+++ .|.. .++++.|++...+. ..+.+++||||++|+|++.+.+........
T Consensus 72 ~~~~~~~~~~~~~~~~~~~---~D~~~~~~~~~~~g~~~~~~--------~~~~~~~~lid~~G~v~~~~~~~~~~~~~~ 140 (149)
T cd03018 72 SPFSLRAWAEENGLTFPLL---SDFWPHGEVAKAYGVFDEDL--------GVAERAVFVIDRDGIIRYAWVSDDGEPRDL 140 (149)
T ss_pred CHHHHHHHHHhcCCCceEe---cCCCchhHHHHHhCCccccC--------CCccceEEEECCCCEEEEEEecCCcccccc
Confidence 4688999999999999988 4433 78999999876441 123456999999999999976655222223
Q ss_pred HHHHHHH
Q 020776 310 DGIIKEI 316 (321)
Q Consensus 310 ~~l~~~L 316 (321)
.++.+.|
T Consensus 141 ~~~~~~~ 147 (149)
T cd03018 141 PDYDEAL 147 (149)
T ss_pred hhHHHHh
Confidence 3344433
No 22
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.87 E-value=1.3e-21 Score=171.77 Aligned_cols=144 Identities=19% Similarity=0.281 Sum_probs=108.3
Q ss_pred CCCCCCCeEEEcCCCCeeeccccCCCeE-EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC----CCC
Q 020776 157 KAAIGGPFKLINHDGKNVTEKDFLGKWT-VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP----ERD 231 (321)
Q Consensus 157 ~~aP~p~f~l~d~~G~~vsLsd~kGK~v-LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp----~~D 231 (321)
..+| +|+++|.+|+.+++++++||++ |+.||++|||+ |..|+|.|++++++|+++ ++.+|+|++|. +.+
T Consensus 18 ~~~p--~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~-C~~e~p~l~~l~~~~~~~---gv~vv~vs~~~~~~~~~~ 91 (183)
T PTZ00256 18 KSFF--EFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGL-TSDHYTQLVELYKQYKSQ---GLEILAFPCNQFMEQEPW 91 (183)
T ss_pred Cccc--ceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCc-hHHHHHHHHHHHHHHhhC---CcEEEEEecccccccCCC
Confidence 3455 9999999999999999999965 55669999998 999999999999999876 57888888652 334
Q ss_pred CHHHHHHHHH-HhCCCceeecC---ChHHHHHHH----HH--------cCceEeecCCCCCCcccccceEEEEEcCCCeE
Q 020776 232 TVEQVREYVK-EFHPKLIGLTG---SPDEIRNIA----RA--------YRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEF 295 (321)
Q Consensus 232 t~e~l~~~~~-~~~~~~~~l~~---~~d~~~~~a----~~--------ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~I 295 (321)
+.+.+.+|.+ +++++|+++.. .......+. .+ +++..+| +..++||||++|+|
T Consensus 92 ~~~~~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP-----------~~~~tflID~~G~I 160 (183)
T PTZ00256 92 DEPEIKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIP-----------WNFAKFLIDGQGKV 160 (183)
T ss_pred CHHHHHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccC-----------cceEEEEECCCCCE
Confidence 5688999975 78999987721 000111122 11 1232333 23358999999999
Q ss_pred EEEeCCCCChhHHHHHHHHHHH
Q 020776 296 VKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 296 v~~~~~~~~~~~l~~~l~~~L~ 317 (321)
++++.+..+.+.+.+.|.++++
T Consensus 161 v~~~~g~~~~~~l~~~I~~ll~ 182 (183)
T PTZ00256 161 VKYFSPKVNPNEMIQDIEKLLN 182 (183)
T ss_pred EEEECCCCCHHHHHHHHHHHhc
Confidence 9999999999988888888875
No 23
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.87 E-value=1.8e-21 Score=162.15 Aligned_cols=133 Identities=25% Similarity=0.367 Sum_probs=110.7
Q ss_pred CCeEEEcCCCCeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHH
Q 020776 162 GPFKLINHDGKNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYV 240 (321)
Q Consensus 162 p~f~l~d~~G~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~ 240 (321)
|+|+++|.+|+.+++++++||++||+|| ++|||. |..+++.|+++++++.++ ++.+|+|++| +++.+++|+
T Consensus 4 p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~-C~~~~~~l~~~~~~~~~~---~~~vv~is~d----~~~~~~~~~ 75 (140)
T cd03017 4 PDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPG-CTKEACDFRDLYEEFKAL---GAVVIGVSPD----SVESHAKFA 75 (140)
T ss_pred CCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCc-hHHHHHHHHHHHHHHHHC---CCEEEEEcCC----CHHHHHHHH
Confidence 4999999999999999999999999999 588996 999999999999999876 5778888864 568999999
Q ss_pred HHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 241 KEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 241 ~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
++++.+|+++ .|....+++.||+...+.++ . ....|.+||||++|+|++.+.+....+.+.+
T Consensus 76 ~~~~~~~~~l---~D~~~~~~~~~gv~~~~~~~----~-~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~ 137 (140)
T cd03017 76 EKYGLPFPLL---SDPDGKLAKAYGVWGEKKKK----Y-MGIERSTFLIDPDGKIVKVWRKVKPKGHAEE 137 (140)
T ss_pred HHhCCCceEE---ECCccHHHHHhCCccccccc----c-CCcceeEEEECCCCEEEEEEecCCccchHHH
Confidence 9999999988 56667899999998875311 0 1234679999999999999877775554444
No 24
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.86 E-value=2.5e-21 Score=170.47 Aligned_cols=145 Identities=21% Similarity=0.299 Sum_probs=113.0
Q ss_pred CCCCCCCCCCeEEEc-CCCC--eeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC
Q 020776 154 SVGKAAIGGPFKLIN-HDGK--NVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE 229 (321)
Q Consensus 154 ~vG~~aP~p~f~l~d-~~G~--~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~ 229 (321)
.+|+++| +|++.+ .+|+ .+++++++||++||+|| ++||+. |..+++.|++++++|+++ ++.+|+||.|+
T Consensus 3 ~~G~~aP--~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~-C~~el~~l~~~~~~~~~~---gv~vi~VS~D~- 75 (187)
T TIGR03137 3 LINTEIK--PFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFV-CPTELEDLADKYAELKKL---GVEVYSVSTDT- 75 (187)
T ss_pred ccCCcCC--CcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCc-CHHHHHHHHHHHHHHHhc---CCcEEEEeCCC-
Confidence 5788898 999998 5776 68889999999999999 999996 999999999999999876 57788999764
Q ss_pred CCCHHHHHHHHHHh----CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCCh
Q 020776 230 RDTVEQVREYVKEF----HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDV 305 (321)
Q Consensus 230 ~Dt~e~l~~~~~~~----~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~ 305 (321)
++..++|.+.. +++|+++ .|....+++.||+..... -.+.|++||||++|+|++.+......
T Consensus 76 ---~~~~~~~~~~~~~~~~l~fpll---sD~~~~~a~~~gv~~~~~--------g~~~p~tfiID~~G~I~~~~~~~~~~ 141 (187)
T TIGR03137 76 ---HFVHKAWHDTSEAIGKITYPML---GDPTGVLTRNFGVLIEEA--------GLADRGTFVIDPEGVIQAVEITDNGI 141 (187)
T ss_pred ---HHHHHHHHhhhhhccCcceeEE---ECCccHHHHHhCCcccCC--------CceeeEEEEECCCCEEEEEEEeCCCC
Confidence 46677776654 5778888 667789999999974321 01346799999999999987544444
Q ss_pred hHHHHHHHHHHHHH
Q 020776 306 NSLADGIIKEIKQY 319 (321)
Q Consensus 306 ~~l~~~l~~~L~~~ 319 (321)
+...+++.+.|+++
T Consensus 142 ~~~~~~ll~~l~~~ 155 (187)
T TIGR03137 142 GRDASELLRKIKAA 155 (187)
T ss_pred CCCHHHHHHHHHHh
Confidence 44555666655544
No 25
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.85 E-value=4.7e-21 Score=170.80 Aligned_cols=149 Identities=17% Similarity=0.262 Sum_probs=108.3
Q ss_pred CCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEE-EEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCC
Q 020776 153 PSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVI-YFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERD 231 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL-~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~D 231 (321)
..+|+.+| +|++.+.+| .+++++++||++|| +||++|||. |..|++.|++++++|+++ ++.+|+||+|....
T Consensus 2 ~~vG~~aP--~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~-C~~El~~l~~~~~~f~~~---~~~vi~vS~D~~~~ 74 (202)
T PRK13190 2 VKLGQKAP--DFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPV-CTTEFIAFSRRYEDFKKL---GVELVGLSVDSIYS 74 (202)
T ss_pred CCCCCCCC--CcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCC-CHHHHHHHHHHHHHHHHC---CCEEEEEeCCCHHH
Confidence 46888998 999999888 79999999998876 689999996 999999999999999876 57788999874322
Q ss_pred CHHHHHHHHHHhC--CCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHH
Q 020776 232 TVEQVREYVKEFH--PKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLA 309 (321)
Q Consensus 232 t~e~l~~~~~~~~--~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~ 309 (321)
..+.++++.++++ ++|+++ .|..+.++++||+..... + ...|.+||||++|+|++............
T Consensus 75 ~~~w~~~~~~~~g~~~~fPll---~D~~~~ia~~ygv~~~~~---g-----~~~p~~fiId~~G~I~~~~~~~~~~gr~~ 143 (202)
T PRK13190 75 HIAWLRDIEERFGIKIPFPVI---ADIDKELAREYNLIDENS---G-----ATVRGVFIIDPNQIVRWMIYYPAETGRNI 143 (202)
T ss_pred HHHHHHhHHHhcCCCceEEEE---ECCChHHHHHcCCccccC---C-----cEEeEEEEECCCCEEEEEEEeCCCCCCCH
Confidence 2233444555565 478888 677899999999853211 0 12467999999999998753322222234
Q ss_pred HHHHHHHHHH
Q 020776 310 DGIIKEIKQY 319 (321)
Q Consensus 310 ~~l~~~L~~~ 319 (321)
+++.+.|+++
T Consensus 144 ~ellr~l~~l 153 (202)
T PRK13190 144 DEIIRITKAL 153 (202)
T ss_pred HHHHHHHHHh
Confidence 4444444433
No 26
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.85 E-value=1e-20 Score=158.68 Aligned_cols=124 Identities=20% Similarity=0.214 Sum_probs=102.8
Q ss_pred CCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCC-CCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCH
Q 020776 155 VGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTH-CPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTV 233 (321)
Q Consensus 155 vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~Fwatw-Cp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~ 233 (321)
+|+++| +|++++.+|+.+++++++||++||+||++| |++ |..+++.|++++++++ ++.+|+|++| ++
T Consensus 2 ~G~~aP--~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~-C~~e~~~l~~~~~~~~-----~~~vi~Is~d----~~ 69 (143)
T cd03014 2 VGDKAP--DFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPV-CATQTKRFNKEAAKLD-----NTVVLTISAD----LP 69 (143)
T ss_pred CCCCCC--CcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCc-CHHHHHHHHHHHHhcC-----CCEEEEEECC----CH
Confidence 688888 999999999999999999999999999999 576 9999999999999873 4778889865 46
Q ss_pred HHHHHHHHHhCC-CceeecCChHHH-HHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 234 EQVREYVKEFHP-KLIGLTGSPDEI-RNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 234 e~l~~~~~~~~~-~~~~l~~~~d~~-~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
+.+++|.++++. +++.+ .|.. ..++++||+..... -...|++||||++|+|++.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~l---~D~~~~~~~~~~gv~~~~~--------~~~~~~~~iid~~G~I~~~~~~ 128 (143)
T cd03014 70 FAQKRWCGAEGVDNVTTL---SDFRDHSFGKAYGVLIKDL--------GLLARAVFVIDENGKVIYVELV 128 (143)
T ss_pred HHHHHHHHhcCCCCceEe---ecCcccHHHHHhCCeeccC--------CccceEEEEEcCCCeEEEEEEC
Confidence 788999999985 78877 5554 78999999965211 0124669999999999998754
No 27
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.85 E-value=4e-21 Score=157.96 Aligned_cols=120 Identities=17% Similarity=0.127 Sum_probs=103.2
Q ss_pred CCeEEEcCCC--CeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHH
Q 020776 162 GPFKLINHDG--KNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREY 239 (321)
Q Consensus 162 p~f~l~d~~G--~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~ 239 (321)
|+|++++.+| +.+++++++||++||+||++||++ |..++|.|+++.+++ ++.+|+|+.| ++.+.+++|
T Consensus 4 p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~-C~~~~~~l~~l~~~~------~~~vv~v~~~---~~~~~~~~~ 73 (127)
T cd03010 4 PAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAP-CREEHPVLMALARQG------RVPIYGINYK---DNPENALAW 73 (127)
T ss_pred CCcccccccCCCccccHHHcCCCEEEEEEEcCcCHH-HHHHHHHHHHHHHhc------CcEEEEEECC---CCHHHHHHH
Confidence 4999999999 889999999999999999999998 999999999987654 3777888875 667999999
Q ss_pred HHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhH
Q 020776 240 VKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNS 307 (321)
Q Consensus 240 ~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~ 307 (321)
+++++..|+.+. .|....+++.|++...|+ +|+||++|+|++.+.|..+.+.
T Consensus 74 ~~~~~~~~~~~~--~D~~~~~~~~~~v~~~P~--------------~~~ld~~G~v~~~~~G~~~~~~ 125 (127)
T cd03010 74 LARHGNPYAAVG--FDPDGRVGIDLGVYGVPE--------------TFLIDGDGIIRYKHVGPLTPEV 125 (127)
T ss_pred HHhcCCCCceEE--ECCcchHHHhcCCCCCCe--------------EEEECCCceEEEEEeccCChHh
Confidence 999998886442 345577899999998887 8999999999999988887654
No 28
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.85 E-value=2e-20 Score=158.17 Aligned_cols=108 Identities=15% Similarity=0.268 Sum_probs=91.9
Q ss_pred eeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhc----CCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCce
Q 020776 173 NVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENS----GIDIVPAFISVDPERDTVEQVREYVKEFHPKLI 248 (321)
Q Consensus 173 ~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~----g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~ 248 (321)
.+++++++||+|+|+|||||||+ |..++|.|.+++++++++. ..++.+|+|+.|. +.+.+++|+++++++|+
T Consensus 17 ~~~ls~~kgk~vlL~FwAsWCpp-Cr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~---~~~~~~~f~~~~~~~~~ 92 (146)
T cd03008 17 REIVARLENRVLLLFFGAVVSPQ-CQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQ---SEQQQESFLKDMPKKWL 92 (146)
T ss_pred cccHHHhCCCEEEEEEECCCChh-HHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCC---CHHHHHHHHHHCCCCce
Confidence 46788999999999999999998 9999999999999997651 2368999999873 45789999999998886
Q ss_pred eecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEE
Q 020776 249 GLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKF 298 (321)
Q Consensus 249 ~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~ 298 (321)
.+....+....+++.|++..+|+ +||||++|+|+..
T Consensus 93 ~~p~~~~~~~~l~~~y~v~~iPt--------------~vlId~~G~Vv~~ 128 (146)
T cd03008 93 FLPFEDEFRRELEAQFSVEELPT--------------VVVLKPDGDVLAA 128 (146)
T ss_pred eecccchHHHHHHHHcCCCCCCE--------------EEEECCCCcEEee
Confidence 65433445568999999999888 9999999999986
No 29
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.84 E-value=6.4e-21 Score=156.96 Aligned_cols=111 Identities=19% Similarity=0.212 Sum_probs=97.5
Q ss_pred CCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC--CCCCHHHHHHHHHHhCCCce
Q 020776 171 GKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP--ERDTVEQVREYVKEFHPKLI 248 (321)
Q Consensus 171 G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp--~~Dt~e~l~~~~~~~~~~~~ 248 (321)
|+++++++++||++||+||++||++ |..++|.|++++++|+++ ++.+|+|+.+. ..++++.+++|+++++++|+
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~-C~~~~p~l~~l~~~~~~~---~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p 88 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCIN-CLHTLPYLTDLEQKYKDD---GLVVIGVHSPEFAFERDLANVKSAVLRYGITYP 88 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCcc-HHHHHHHHHHHHHHcCcC---CeEEEEeccCccccccCHHHHHHHHHHcCCCCC
Confidence 5789999999999999999999998 999999999999999865 68888887642 13578999999999999999
Q ss_pred eecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC
Q 020776 249 GLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN 302 (321)
Q Consensus 249 ~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~ 302 (321)
.+ .|....+++.|++...|+ +||||++|+|++.+.|.
T Consensus 89 ~~---~D~~~~~~~~~~v~~~P~--------------~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 89 VA---NDNDYATWRAYGNQYWPA--------------LYLIDPTGNVRHVHFGE 125 (126)
T ss_pred EE---ECCchHHHHHhCCCcCCe--------------EEEECCCCcEEEEEecC
Confidence 88 677788899999987776 99999999999987664
No 30
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.83 E-value=8.7e-20 Score=181.81 Aligned_cols=136 Identities=15% Similarity=0.100 Sum_probs=113.4
Q ss_pred CCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC--C
Q 020776 153 PSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE--R 230 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~--~ 230 (321)
..+++++| +|++.|.+|+.+.++ +||+|||+||++||++ |+.++|.|++++++++.+ ++.+|+|+++.. .
T Consensus 32 ~~~~~~lP--~f~l~D~dG~~v~ls--kGKpVvV~FWATWCpp-Ck~emP~L~eL~~e~k~~---~v~VI~Vs~~~~~~e 103 (521)
T PRK14018 32 ATVPHTLS--TLKTADNRPASVYLK--KDKPTLIKFWASWCPL-CLSELGETEKWAQDAKFS---SANLITVASPGFLHE 103 (521)
T ss_pred ccccCCCC--CeEeecCCCceeecc--CCCEEEEEEEcCCCHH-HHHHHHHHHHHHHHhccC---CeEEEEEeccccccc
Confidence 45555666 999999999999987 8999999999999998 999999999999999754 577788876422 2
Q ss_pred CCHHHHHHHHHHhCC-CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHH
Q 020776 231 DTVEQVREYVKEFHP-KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLA 309 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~-~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~ 309 (321)
++.+.+++|++..+. +++++ .|....+++.|+|..+|+ ++|||++|+|+..+.|..+.+++.
T Consensus 104 ~~~~~~~~~~~~~~y~~~pV~---~D~~~~lak~fgV~giPT--------------t~IIDkdGkIV~~~~G~~~~eeL~ 166 (521)
T PRK14018 104 KKDGDFQKWYAGLDYPKLPVL---TDNGGTLAQSLNISVYPS--------------WAIIGKDGDVQRIVKGSISEAQAL 166 (521)
T ss_pred ccHHHHHHHHHhCCCccccee---ccccHHHHHHcCCCCcCe--------------EEEEcCCCeEEEEEeCCCCHHHHH
Confidence 356778888877664 45666 677788999999999998 899999999999998999988887
Q ss_pred HHHH
Q 020776 310 DGII 313 (321)
Q Consensus 310 ~~l~ 313 (321)
+.|+
T Consensus 167 a~Ie 170 (521)
T PRK14018 167 ALIR 170 (521)
T ss_pred HHHH
Confidence 7666
No 31
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.83 E-value=4.8e-20 Score=165.75 Aligned_cols=151 Identities=15% Similarity=0.243 Sum_probs=113.5
Q ss_pred CCCCCCCCCCCeEEEcCCCCeeeccccCCCeE-EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCC
Q 020776 153 PSVGKAAIGGPFKLINHDGKNVTEKDFLGKWT-VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERD 231 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~v-LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~D 231 (321)
+.+|+++| +|++.+.+|+.+.+++++|||+ |++||++|||. |..|++.|++++++|+++ ++.+|+||+|.. .
T Consensus 2 ~~~Gd~aP--dF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpv-Ct~El~~l~~~~~~f~~~---gv~vigIS~D~~-~ 74 (215)
T PRK13599 2 KLLGEKFP--SMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPV-CTTEFVEFARKANDFKEL---NTELIGLSVDQV-F 74 (215)
T ss_pred CCCCCCCC--CCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCc-CHHHHHHHHHHHHHHHHC---CCEEEEEeCCCH-H
Confidence 46899999 9999999999888899999986 57999999996 999999999999999876 578899997642 1
Q ss_pred CHHHHHHHHHH---hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHH
Q 020776 232 TVEQVREYVKE---FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSL 308 (321)
Q Consensus 232 t~e~l~~~~~~---~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l 308 (321)
....+.+++++ .+++|+++ .|..+++++.||+... . . .....+++||||++|+|++.+.........
T Consensus 75 ~~~~w~~~i~~~~~~~i~fPil---~D~~~~va~~yg~~~~-~--~----~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~ 144 (215)
T PRK13599 75 SHIKWVEWIKDNTNIAIPFPVI---ADDLGKVSNQLGMIHP-G--K----GTNTVRAVFIVDDKGTIRLIMYYPQEVGRN 144 (215)
T ss_pred HHHHHHHhHHHhcCCCCceeEE---ECCCchHHHHcCCCcc-C--C----CCceeeEEEEECCCCEEEEEEEcCCCCCCC
Confidence 12233344443 36789988 6777889999998531 1 0 112357799999999999886444444455
Q ss_pred HHHHHHHHHHHh
Q 020776 309 ADGIIKEIKQYK 320 (321)
Q Consensus 309 ~~~l~~~L~~~k 320 (321)
.++|.+.|++++
T Consensus 145 ~~eilr~l~~lq 156 (215)
T PRK13599 145 VDEILRALKALQ 156 (215)
T ss_pred HHHHHHHHHHhh
Confidence 666666666554
No 32
>PRK15000 peroxidase; Provisional
Probab=99.83 E-value=5e-20 Score=163.95 Aligned_cols=146 Identities=16% Similarity=0.133 Sum_probs=111.8
Q ss_pred CCCCCCCCCCeEEEcCC--CC---eeecccc-CCCeEEEEEecC-CCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 154 SVGKAAIGGPFKLINHD--GK---NVTEKDF-LGKWTVIYFGFT-HCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 154 ~vG~~aP~p~f~l~d~~--G~---~vsLsd~-kGK~vLL~Fwat-wCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
.+|+++| +|++.+.. |+ .++++++ +||++||+||++ ||+. |..|++.|++++++|+++ ++.+|+||+
T Consensus 3 ~vg~~aP--dF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~v-C~~El~~l~~~~~~f~~~---g~~vigvS~ 76 (200)
T PRK15000 3 LVTRQAP--DFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFV-CPSELIAFDKRYEEFQKR---GVEVVGVSF 76 (200)
T ss_pred cCCCcCC--CCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCC-CHHHHHHHHHHHHHHHHC---CCEEEEEEC
Confidence 4788998 99999864 44 3456665 899999999996 8885 999999999999999876 678899997
Q ss_pred CCCCCCHHHHHHHHH----HhC---CCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe
Q 020776 227 DPERDTVEQVREYVK----EFH---PKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF 299 (321)
Q Consensus 227 Dp~~Dt~e~l~~~~~----~~~---~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~ 299 (321)
|. ++..+.|.+ +.+ ++|+.+ .|..+++++.||+..... -...|.+||||++|+|++.+
T Consensus 77 D~----~~~~~~w~~~~~~~~g~~~i~fpll---sD~~~~ia~~ygv~~~~~--------g~~~r~tfiID~~G~I~~~~ 141 (200)
T PRK15000 77 DS----EFVHNAWRNTPVDKGGIGPVKYAMV---ADVKREIQKAYGIEHPDE--------GVALRGSFLIDANGIVRHQV 141 (200)
T ss_pred CC----HHHHHHHHhhHHHhCCccccCceEE---ECCCcHHHHHcCCccCCC--------CcEEeEEEEECCCCEEEEEE
Confidence 63 455555543 344 578888 677789999999864211 01346799999999999988
Q ss_pred CCCCChhHHHHHHHHHHHHHh
Q 020776 300 GKNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 300 ~~~~~~~~l~~~l~~~L~~~k 320 (321)
.+........+++.+.+++++
T Consensus 142 ~~~~~~gr~~~eilr~l~al~ 162 (200)
T PRK15000 142 VNDLPLGRNIDEMLRMVDALQ 162 (200)
T ss_pred ecCCCCCCCHHHHHHHHHHhh
Confidence 776666666777777776654
No 33
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.83 E-value=6.9e-20 Score=164.76 Aligned_cols=149 Identities=17% Similarity=0.257 Sum_probs=113.8
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEE-EEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVI-YFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER 230 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL-~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~ 230 (321)
.+.+|+++| +|++.+.+|+....++++|||+|| +||++||+. |..|++.|++++++|+++ ++.+|+||+|.
T Consensus 6 ~~~iG~~aP--dF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpv-C~tEl~~l~~~~~ef~~~---g~~VigvS~Ds-- 77 (215)
T PRK13191 6 IPLIGEKFP--EMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPV-CTTEFYSFAKKYEEFKKL---NTELIGLSVDS-- 77 (215)
T ss_pred cccCCCcCC--CCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCc-CHHHHHHHHHHHHHHHHC---CCEEEEEECCC--
Confidence 567999999 999999999744335589998776 889999996 999999999999999877 67889999874
Q ss_pred CCHHHHHH---HHHH---hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCC
Q 020776 231 DTVEQVRE---YVKE---FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNND 304 (321)
Q Consensus 231 Dt~e~l~~---~~~~---~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~ 304 (321)
....++ +.++ .+++|+.+ .|..++++++||+..... .....+.+||||++|+|++.+.+...
T Consensus 78 --~~~h~aw~~~~~~~~~~~i~fPll---sD~~~~ia~~ygv~~~~~-------~~~~~r~tfIID~~G~Ir~~~~~~~~ 145 (215)
T PRK13191 78 --NISHIEWVMWIEKNLKVEVPFPII---ADPMGNVAKRLGMIHAES-------STATVRAVFIVDDKGTVRLILYYPME 145 (215)
T ss_pred --HHHHHHHHhhHHHhcCCCCceEEE---ECCchHHHHHcCCccccc-------CCceeEEEEEECCCCEEEEEEecCCC
Confidence 344444 4443 35789998 777799999999854211 01245779999999999998655555
Q ss_pred hhHHHHHHHHHHHHHh
Q 020776 305 VNSLADGIIKEIKQYK 320 (321)
Q Consensus 305 ~~~l~~~l~~~L~~~k 320 (321)
.....+++.+.|++++
T Consensus 146 ~gr~~~eilr~l~alq 161 (215)
T PRK13191 146 IGRNIDEILRAIRALQ 161 (215)
T ss_pred CCCCHHHHHHHHHHhh
Confidence 5556677777776654
No 34
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.83 E-value=9.1e-20 Score=146.68 Aligned_cols=109 Identities=17% Similarity=0.236 Sum_probs=92.5
Q ss_pred CCeEEEcCCCCeeeccccC-CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHH
Q 020776 162 GPFKLINHDGKNVTEKDFL-GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYV 240 (321)
Q Consensus 162 p~f~l~d~~G~~vsLsd~k-GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~ 240 (321)
|+|++++.+|+.+++++++ ||++||+||++||++ |+.++|.|+++++++.+ ++.++.++ | ++.+..++|+
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~-C~~~~p~l~~~~~~~~~----~~~vi~v~-~---~~~~~~~~~~ 71 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPV-CKKLLPVIRSIARAEAD----WLDVVLAS-D---GEKAEHQRFL 71 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcc-hHhHhHHHHHHHHHhcC----CcEEEEEe-C---CCHHHHHHHH
Confidence 4899999999999999997 999999999999998 99999999999888743 36556665 3 4578999999
Q ss_pred HHhCCC-ceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEE
Q 020776 241 KEFHPK-LIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKF 298 (321)
Q Consensus 241 ~~~~~~-~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~ 298 (321)
+++++. ++.+. + ..+.+.|++..+|+ +||||++|+|+++
T Consensus 72 ~~~~~~~~p~~~---~--~~~~~~~~~~~~P~--------------~~vid~~G~v~~~ 111 (114)
T cd02967 72 KKHGLEAFPYVL---S--AELGMAYQVSKLPY--------------AVLLDEAGVIAAK 111 (114)
T ss_pred HHhCCCCCcEEe---c--HHHHhhcCCCCcCe--------------EEEECCCCeEEec
Confidence 999984 77763 2 34788999988777 9999999999885
No 35
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.83 E-value=1.1e-19 Score=162.02 Aligned_cols=146 Identities=17% Similarity=0.283 Sum_probs=110.7
Q ss_pred CCCCCCCCCeEEEcCCCCeeeccccCC-CeEE-EEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCC
Q 020776 155 VGKAAIGGPFKLINHDGKNVTEKDFLG-KWTV-IYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDT 232 (321)
Q Consensus 155 vG~~aP~p~f~l~d~~G~~vsLsd~kG-K~vL-L~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt 232 (321)
+|+.+| +|++.+.+| .+++++++| |++| ++||++|||. |..+++.|++++++|+++ ++.+|+||+|+
T Consensus 1 vG~~aP--~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~-C~~el~~l~~~~~~f~~~---gv~vigvS~D~---- 69 (203)
T cd03016 1 LGDTAP--NFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPV-CTTELGAFAKLAPEFKKR---NVKLIGLSVDS---- 69 (203)
T ss_pred CcCCCC--CeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCc-CHHHHHHHHHHHHHHHHc---CCEEEEEECCC----
Confidence 577888 999999988 589999998 7764 5889999996 999999999999999876 67888999874
Q ss_pred HHHHHHHHHH------hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChh
Q 020776 233 VEQVREYVKE------FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVN 306 (321)
Q Consensus 233 ~e~l~~~~~~------~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~ 306 (321)
.+..++|.+. .+++|+++ .|..+.+++.||+..... + .-...+.+||||++|+|++.+.+.....
T Consensus 70 ~~~~~~~~~~i~~~~~~~~~fpil---~D~~~~ia~~yg~~~~~~---~---~~~~~r~~fiID~~G~I~~~~~~~~~~g 140 (203)
T cd03016 70 VESHIKWIEDIEEYTGVEIPFPII---ADPDREVAKLLGMIDPDA---G---STLTVRAVFIIDPDKKIRLILYYPATTG 140 (203)
T ss_pred HHHHHHHHhhHHHhcCCCCceeEE---ECchHHHHHHcCCccccC---C---CCceeeEEEEECCCCeEEEEEecCCCCC
Confidence 3455555443 57889988 788899999999864210 0 0012467999999999998876655444
Q ss_pred HHHHHHHHHHHHHh
Q 020776 307 SLADGIIKEIKQYK 320 (321)
Q Consensus 307 ~l~~~l~~~L~~~k 320 (321)
...+++.+.|++++
T Consensus 141 r~~~ell~~l~~lq 154 (203)
T cd03016 141 RNFDEILRVVDALQ 154 (203)
T ss_pred CCHHHHHHHHHHHh
Confidence 44566666666553
No 36
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.83 E-value=1.1e-19 Score=160.10 Aligned_cols=146 Identities=18% Similarity=0.236 Sum_probs=115.3
Q ss_pred CCCCCCCCCCeEEEcC---CCCeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC
Q 020776 154 SVGKAAIGGPFKLINH---DGKNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE 229 (321)
Q Consensus 154 ~vG~~aP~p~f~l~d~---~G~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~ 229 (321)
.||.++| +|+.... +...++|++++||++||+|| ++|||. |..|++.|++++++|++. ++.+|+||.
T Consensus 3 ~~~~~~p--~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~-C~~el~~l~~~~~~f~~~---g~~vigIS~--- 73 (187)
T PRK10382 3 LINTKIK--PFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFV-CPTELGDVADHYEELQKL---GVDVYSVST--- 73 (187)
T ss_pred ccCCcCC--CcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCc-CHHHHHHHHHHHHHHHhC---CCEEEEEeC---
Confidence 5788998 9998763 34567888999999999999 999996 999999999999999876 678899996
Q ss_pred CCCHHHHHHHHHHh----CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCCh
Q 020776 230 RDTVEQVREYVKEF----HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDV 305 (321)
Q Consensus 230 ~Dt~e~l~~~~~~~----~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~ 305 (321)
|+++..++|.+.. +++|+.+ .|....++++||+..... -...+.+||||++|+|++.+......
T Consensus 74 -D~~~~~~a~~~~~~~~~~l~fpll---sD~~~~ia~~ygv~~~~~--------g~~~r~tfIID~~G~I~~~~~~~~~~ 141 (187)
T PRK10382 74 -DTHFTHKAWHSSSETIAKIKYAMI---GDPTGALTRNFDNMREDE--------GLADRATFVVDPQGIIQAIEVTAEGI 141 (187)
T ss_pred -CCHHHHHHHHHhhccccCCceeEE---EcCchHHHHHcCCCcccC--------CceeeEEEEECCCCEEEEEEEeCCCC
Confidence 4578889998764 6789999 678899999999853211 01347799999999999987555444
Q ss_pred hHHHHHHHHHHHHHh
Q 020776 306 NSLADGIIKEIKQYK 320 (321)
Q Consensus 306 ~~l~~~l~~~L~~~k 320 (321)
....+++.+.|++++
T Consensus 142 ~~~~~eil~~l~alq 156 (187)
T PRK10382 142 GRDASDLLRKIKAAQ 156 (187)
T ss_pred CCCHHHHHHHHHhhh
Confidence 445666666666554
No 37
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.82 E-value=2e-19 Score=165.42 Aligned_cols=149 Identities=13% Similarity=0.130 Sum_probs=116.8
Q ss_pred cCCCCCCCCCCCCCeEEEc-CCC--Ceeecccc-CCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEE
Q 020776 150 KQGPSVGKAAIGGPFKLIN-HDG--KNVTEKDF-LGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFI 224 (321)
Q Consensus 150 ~~~~~vG~~aP~p~f~l~d-~~G--~~vsLsd~-kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~I 224 (321)
...+.+|+++| +|++.+ .+| +.++++++ +||++||+|| ++|||. |..|++.|++++++|+++ ++.+|+|
T Consensus 65 ~~~~~vGd~aP--dF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpv-Ct~El~~l~~~~~ef~~~---gv~VigI 138 (261)
T PTZ00137 65 VTSSLVGKLMP--SFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFV-CPSELLGFSERLKEFEER---GVKVLGV 138 (261)
T ss_pred cccccCCCCCC--CCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCC-CHHHHHHHHHHHHHHHHC---CCEEEEE
Confidence 34578999999 999987 455 46899998 8999988887 899997 999999999999999876 5778899
Q ss_pred eeCCCCCCHHHHHHHHHH-------hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEE
Q 020776 225 SVDPERDTVEQVREYVKE-------FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVK 297 (321)
Q Consensus 225 S~Dp~~Dt~e~l~~~~~~-------~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~ 297 (321)
|+|. +...++|.+. .+++|+++ .|..++++++||+... . ....|.+||||++|+|++
T Consensus 139 S~Ds----~~~h~aw~~~~~~~~g~~~l~fPlL---sD~~~~iakayGv~~~-~--------g~a~R~tFIID~dG~I~~ 202 (261)
T PTZ00137 139 SVDS----PFSHKAWKELDVRQGGVSPLKFPLF---SDISREVSKSFGLLRD-E--------GFSHRASVLVDKAGVVKH 202 (261)
T ss_pred ECCC----HHHHHHHHhhhhhhccccCcceEEE---EcCChHHHHHcCCCCc-C--------CceecEEEEECCCCEEEE
Confidence 9763 4566666653 46789998 6677899999998531 1 013466999999999999
Q ss_pred EeCCCCChhHHHHHHHHHHHHHh
Q 020776 298 FFGKNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 298 ~~~~~~~~~~l~~~l~~~L~~~k 320 (321)
.+..+.......+++.++|++++
T Consensus 203 ~~~~~~~~gr~v~eiLr~l~alq 225 (261)
T PTZ00137 203 VAVYDLGLGRSVDETLRLFDAVQ 225 (261)
T ss_pred EEEeCCCCCCCHHHHHHHHHHhc
Confidence 87555555566777777777664
No 38
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.81 E-value=1.5e-19 Score=150.26 Aligned_cols=127 Identities=22% Similarity=0.264 Sum_probs=107.7
Q ss_pred CCeEEEcCCCCeeeccccCCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHH
Q 020776 162 GPFKLINHDGKNVTEKDFLGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYV 240 (321)
Q Consensus 162 p~f~l~d~~G~~vsLsd~kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~ 240 (321)
|+|+++|.+|+.+++++++||++||+|| ++||+. |..+++.|++++++|+++ ++.+|+|+.| +++.+++|+
T Consensus 3 p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~-C~~~~~~l~~~~~~~~~~---~~~~i~is~d----~~~~~~~~~ 74 (140)
T cd02971 3 PDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPV-CTTELCAFRDLAEEFAKG---GAEVLGVSVD----SPFSHKAWA 74 (140)
T ss_pred CCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCc-CHHHHHHHHHHHHHHHHC---CCEEEEEeCC----CHHHHHHHH
Confidence 4999999999999999999999999999 789997 999999999999999755 5778888864 568899999
Q ss_pred HHh-CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCC
Q 020776 241 KEF-HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNND 304 (321)
Q Consensus 241 ~~~-~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~ 304 (321)
+++ +.+|+++ .|....+++.||+...+... .....|++||||++|+|++.+.+...
T Consensus 75 ~~~~~~~~~~l---~D~~~~~~~~~g~~~~~~~~-----~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 75 EKEGGLNFPLL---SDPDGEFAKAYGVLIEKSAG-----GGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred hcccCCCceEE---ECCChHHHHHcCCccccccc-----cCceeEEEEEECCCCcEEEEEecCCC
Confidence 999 8999998 45667899999998877421 11245779999999999999866554
No 39
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.81 E-value=1.6e-19 Score=147.24 Aligned_cols=122 Identities=15% Similarity=0.151 Sum_probs=105.8
Q ss_pred CCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHH
Q 020776 162 GPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVK 241 (321)
Q Consensus 162 p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~ 241 (321)
|+|++++.+|+.+++++++||++||+||++||++ |..++|.|++++++ +.+++|++|. ++++.+++|++
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~-C~~~~~~l~~~~~~--------~~~i~i~~~~--~~~~~~~~~~~ 69 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPV-CRFTSPTVNQLAAD--------YPVVSVALRS--GDDGAVARFMQ 69 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChh-hhhhChHHHHHHhh--------CCEEEEEccC--CCHHHHHHHHH
Confidence 4899999999999999999999999999999997 99999999999865 2346677774 56899999999
Q ss_pred HhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHH
Q 020776 242 EFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 242 ~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
+++++|+.+ .|...++.+.|++...|+ ++|||++| |++.+.|..+.+.+.+.+
T Consensus 70 ~~~~~~~~~---~d~~~~~~~~~~i~~~P~--------------~~vid~~g-i~~~~~g~~~~~~~~~~~ 122 (123)
T cd03011 70 KKGYGFPVI---NDPDGVISARWGVSVTPA--------------IVIVDPGG-IVFVTTGVTSEWGLRLRL 122 (123)
T ss_pred HcCCCccEE---ECCCcHHHHhCCCCcccE--------------EEEEcCCC-eEEEEeccCCHHHHHhhc
Confidence 999999988 455577899999988887 99999999 999988888888876653
No 40
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.81 E-value=2.2e-19 Score=141.97 Aligned_cols=116 Identities=25% Similarity=0.382 Sum_probs=103.4
Q ss_pred CeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHH
Q 020776 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKE 242 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~ 242 (321)
+|++.+.+|+.+++++++||++||+||++||+. |...++.|.++.+++++. ++.+++|++|++ +++.+++|+++
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~-C~~~~~~l~~~~~~~~~~---~~~~~~v~~d~~--~~~~~~~~~~~ 74 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPP-CRAEMPELEALAKEYKDD---GVEVVGVNVDDD--DPAAVKAFLKK 74 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEeecccChh-HHHHhHHHHHHHHHhCCC---CeEEEEEECCCC--CHHHHHHHHHH
Confidence 478899999999999999999999999999998 999999999999999744 688899999864 68999999999
Q ss_pred hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 243 FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 243 ~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
++.+|+++ .|...++.+.|++...|. ++|+|++|+|++.+.|
T Consensus 75 ~~~~~~~~---~~~~~~~~~~~~~~~~P~--------------~~l~d~~g~v~~~~~g 116 (116)
T cd02966 75 YGITFPVL---LDPDGELAKAYGVRGLPT--------------TFLIDRDGRIRARHVG 116 (116)
T ss_pred cCCCcceE---EcCcchHHHhcCcCccce--------------EEEECCCCcEEEEecC
Confidence 99999988 455678899999987776 9999999999988743
No 41
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.81 E-value=2e-19 Score=149.31 Aligned_cols=108 Identities=23% Similarity=0.361 Sum_probs=91.7
Q ss_pred CeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeec
Q 020776 172 KNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLT 251 (321)
Q Consensus 172 ~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~ 251 (321)
+++++++++||++||+||++||++ |+.++|.|++++++++++ +.++.+++|++|+ +.+.+++|+++++ .|..+.
T Consensus 8 ~~v~l~~~~Gk~vll~F~atwC~~-C~~~~p~l~~l~~~~~~~-~~~v~vi~Vs~d~---~~~~~~~~~~~~~-~~~~~~ 81 (132)
T cd02964 8 GVVPVSALEGKTVGLYFSASWCPP-CRAFTPKLVEFYEKLKEE-GKNFEIVFVSRDR---SEESFNEYFSEMP-PWLAVP 81 (132)
T ss_pred ccccHHHhCCCEEEEEEECCCCch-HHHHHHHHHHHHHHHhhc-CCCeEEEEEecCC---CHHHHHHHHhcCC-CeEeec
Confidence 599999999999999999999998 999999999999999865 3468889999985 3588999999998 666664
Q ss_pred CCh-HHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe
Q 020776 252 GSP-DEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF 299 (321)
Q Consensus 252 ~~~-d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~ 299 (321)
... +....+++.|++..+|+ ++|||++|+|+.+.
T Consensus 82 ~~d~~~~~~~~~~~~v~~iPt--------------~~lid~~G~iv~~~ 116 (132)
T cd02964 82 FEDEELRELLEKQFKVEGIPT--------------LVVLKPDGDVVTTN 116 (132)
T ss_pred cCcHHHHHHHHHHcCCCCCCE--------------EEEECCCCCEEchh
Confidence 333 34567788899998887 99999999999864
No 42
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.81 E-value=2.6e-19 Score=159.15 Aligned_cols=147 Identities=18% Similarity=0.309 Sum_probs=111.9
Q ss_pred CCCCCCCCCCCeEEEc----CCCCeeeccccCCCeEEEEEec-CCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 153 PSVGKAAIGGPFKLIN----HDGKNVTEKDFLGKWTVIYFGF-THCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d----~~G~~vsLsd~kGK~vLL~Fwa-twCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
..+|+++| +|++.+ .+|++++|++++||++||+||+ +||+. |+.+++.|.+++++|+++ ++.+|+||+|
T Consensus 6 ~~~G~~aP--dF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~-C~~e~~~l~~~~~~f~~~---g~~vv~IS~d 79 (199)
T PTZ00253 6 AKINHPAP--SFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFV-CPTEIIQFSDSVKRFNEL---NCEVLACSMD 79 (199)
T ss_pred cccCCcCC--CCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCc-CHHHHHHHHHHHHHHHHc---CCEEEEEeCC
Confidence 56899998 999664 5678999999999999999995 77995 999999999999999876 6888999987
Q ss_pred CCCCCHHHHHHHHH--H----h-CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeC
Q 020776 228 PERDTVEQVREYVK--E----F-HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFG 300 (321)
Q Consensus 228 p~~Dt~e~l~~~~~--~----~-~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~ 300 (321)
+. ....+|.. + . +++|+++ .|..+++++.||+...... ...+.+||||++|+|++.+.
T Consensus 80 ~~----~~~~~~~~~~~~~~~~~~~~fpll---~D~~~~ia~~ygv~~~~~g--------~~~r~~fiID~~G~i~~~~~ 144 (199)
T PTZ00253 80 SE----YAHLQWTLQERKKGGLGTMAIPML---ADKTKSIARSYGVLEEEQG--------VAYRGLFIIDPKGMLRQITV 144 (199)
T ss_pred CH----HHHHHHHhChHhhCCccccccceE---ECcHhHHHHHcCCcccCCC--------ceEEEEEEECCCCEEEEEEe
Confidence 53 33333322 1 1 3688888 7888999999998643210 12367999999999999876
Q ss_pred CCCChhHHHHHHHHHHHHHh
Q 020776 301 KNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 301 ~~~~~~~l~~~l~~~L~~~k 320 (321)
+........+++.+.|++++
T Consensus 145 ~~~~~~r~~~e~l~~l~a~~ 164 (199)
T PTZ00253 145 NDMPVGRNVEEVLRLLEAFQ 164 (199)
T ss_pred cCCCCCCCHHHHHHHHHhhh
Confidence 65555555666666666553
No 43
>PRK13189 peroxiredoxin; Provisional
Probab=99.80 E-value=4.7e-19 Score=160.11 Aligned_cols=148 Identities=18% Similarity=0.280 Sum_probs=110.4
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeeccc-cCCCeEEE-EEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTEKD-FLGKWTVI-YFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE 229 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsLsd-~kGK~vLL-~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~ 229 (321)
...+|+++| +|++.+.+|+ +++++ ++|||++| +||++||+. |..|++.|++++++|+++ ++.+|+||+|.
T Consensus 8 ~~~vG~~aP--dF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpv-C~tEl~~l~~~~~ef~~~---~v~VigvS~D~- 79 (222)
T PRK13189 8 MPLIGDKFP--EFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPV-CTTEFVAFQKRYDEFREL---NTELIGLSIDQ- 79 (222)
T ss_pred cccCCCcCC--CcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCC-CHHHHHHHHHHHHHHHHc---CCEEEEEECCC-
Confidence 357899999 9999999985 67776 59997665 779999996 999999999999999876 67789999874
Q ss_pred CCCHHHHHHHHHH----h--CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCC
Q 020776 230 RDTVEQVREYVKE----F--HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNN 303 (321)
Q Consensus 230 ~Dt~e~l~~~~~~----~--~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~ 303 (321)
.....+|++. . +++|+++ .|..++++++||+..... . -...|++||||++|+|++.+..+.
T Consensus 80 ---~~~h~aw~~~~~~~~g~~i~fPll---sD~~~~ia~~ygv~~~~~---~----~~~~r~tfIID~~G~Ir~~~~~~~ 146 (222)
T PRK13189 80 ---VFSHIKWVEWIKEKLGVEIEFPII---ADDRGEIAKKLGMISPGK---G----TNTVRAVFIIDPKGIIRAILYYPQ 146 (222)
T ss_pred ---HHHHHHHHHhHHHhcCcCcceeEE---EcCccHHHHHhCCCcccc---C----CCceeEEEEECCCCeEEEEEecCC
Confidence 3444455443 2 4678888 677889999999864211 0 014577999999999998865544
Q ss_pred ChhHHHHHHHHHHHHHh
Q 020776 304 DVNSLADGIIKEIKQYK 320 (321)
Q Consensus 304 ~~~~l~~~l~~~L~~~k 320 (321)
......+++.++|++++
T Consensus 147 ~~gr~~~eilr~l~alq 163 (222)
T PRK13189 147 EVGRNMDEILRLVKALQ 163 (222)
T ss_pred CCCCCHHHHHHHHHHhh
Confidence 44444556666666553
No 44
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.80 E-value=7.8e-19 Score=153.97 Aligned_cols=151 Identities=11% Similarity=0.104 Sum_probs=110.8
Q ss_pred CCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC----CCCCHHHHH
Q 020776 162 GPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP----ERDTVEQVR 237 (321)
Q Consensus 162 p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp----~~Dt~e~l~ 237 (321)
.+|++++.+|+.++|++++||+|||+|||+||+. |. +++.|++++++|+++ ++.+|+|+++. +.++.++++
T Consensus 6 ~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~-~~-q~~~L~~L~~~y~~~---gl~Vlg~p~nqf~~qe~~~~~ei~ 80 (183)
T PRK10606 6 LTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGL-TP-QYEQLENIQKAWADQ---GFVVLGFPCNQFLGQEPGSDEEIK 80 (183)
T ss_pred cCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCC-cH-HHHHHHHHHHHHhhC---CeEEEEeeccccccCCCCCHHHHH
Confidence 3999999999999999999999999999999997 85 799999999999876 68889998862 346789999
Q ss_pred HHHH-HhCCCceeecC-----C-hHHHHHHHH-HcCceEeecCCC------------CCCcccccceEEEEEcCCCeEEE
Q 020776 238 EYVK-EFHPKLIGLTG-----S-PDEIRNIAR-AYRVYYMKTAEE------------DSDYLVDHSIVMYLMSPKMEFVK 297 (321)
Q Consensus 238 ~~~~-~~~~~~~~l~~-----~-~d~~~~~a~-~ygv~~~p~~~~------------~~~y~v~~~~~~~LID~dG~Iv~ 297 (321)
+|++ +++++|+++.. . ..+.-+..+ +......+.... ...-.+.+...-||||++|+++.
T Consensus 81 ~f~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~ 160 (183)
T PRK10606 81 TYCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQ 160 (183)
T ss_pred HHHHHccCCCceeEEEEccCCCCCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEE
Confidence 9997 79999987731 1 112222221 221100000000 00013556677999999999999
Q ss_pred EeCCCCChhH--HHHHHHHHHH
Q 020776 298 FFGKNNDVNS--LADGIIKEIK 317 (321)
Q Consensus 298 ~~~~~~~~~~--l~~~l~~~L~ 317 (321)
+|.....+.+ +.+.|+++|.
T Consensus 161 r~~~~~~p~~~~i~~~i~~~l~ 182 (183)
T PRK10606 161 RFSPDMTPEDPIVMESIKLALA 182 (183)
T ss_pred EECCCCCCCHHHHHHHHHHHhc
Confidence 9988877776 8888877763
No 45
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.80 E-value=4e-19 Score=146.89 Aligned_cols=113 Identities=25% Similarity=0.422 Sum_probs=93.8
Q ss_pred EEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCC
Q 020776 166 LINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHP 245 (321)
Q Consensus 166 l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~ 245 (321)
|+|.+|+.+++++++||+|||+||++||++ |..++|.|+++++++.++ +.++.+++|++|.. .+.+++|.++++
T Consensus 3 l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~-C~~~~p~l~~~~~~~~~~-~~~~~vv~is~d~~---~~~~~~~~~~~~- 76 (131)
T cd03009 3 LLRNDGGKVPVSSLEGKTVGLYFSASWCPP-CRAFTPKLVEFYEKLKES-GKNFEIVFISWDRD---EESFNDYFSKMP- 76 (131)
T ss_pred ccccCCCCccHHHhCCcEEEEEEECCCChH-HHHHhHHHHHHHHHHHhc-CCCEEEEEEECCCC---HHHHHHHHHcCC-
Confidence 568899999999999999999999999998 999999999999999865 44688899999853 477888887764
Q ss_pred CceeecCC-hHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe
Q 020776 246 KLIGLTGS-PDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF 299 (321)
Q Consensus 246 ~~~~l~~~-~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~ 299 (321)
|..+... .+....+++.|++...|+ ++|||++|+|+.+.
T Consensus 77 -~~~~~~~~~~~~~~~~~~~~v~~~P~--------------~~lid~~G~i~~~~ 116 (131)
T cd03009 77 -WLAVPFSDRERRSRLNRTFKIEGIPT--------------LIILDADGEVVTTD 116 (131)
T ss_pred -eeEcccCCHHHHHHHHHHcCCCCCCE--------------EEEECCCCCEEccc
Confidence 3333222 355678899999998887 99999999998864
No 46
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.79 E-value=5.6e-19 Score=190.44 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=124.7
Q ss_pred CCCCCCCCCCCCCeEEEc--CCCCeeec-cccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee-
Q 020776 151 QGPSVGKAAIGGPFKLIN--HDGKNVTE-KDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV- 226 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~l~d--~~G~~vsL-sd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~- 226 (321)
....+|.++| +|...+ .+|+++++ ++++||+|||+||++||++ |+.++|.|++++++|+++ ++.+|+|++
T Consensus 389 ~~~~~g~~~p--~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~p-C~~e~P~L~~l~~~y~~~---~~~vvgV~~~ 462 (1057)
T PLN02919 389 ESKKTATKVP--EFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCIN-CMHVLPDLEFLEKKYKDQ---PFTVVGVHSA 462 (1057)
T ss_pred hccccCCcCC--CCcccccccCCccccchhhcCCCEEEEEEECCcChh-HHhHhHHHHHHHHHcCCC---CeEEEEEecc
Confidence 3455788888 998876 78999998 6899999999999999998 999999999999999865 588888874
Q ss_pred --CCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCC
Q 020776 227 --DPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNND 304 (321)
Q Consensus 227 --Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~ 304 (321)
|.+ ++.+.+++|+++++++|+.+ .|....+++.|++..+|+ +||||++|+|++++.|...
T Consensus 463 ~~D~~-~~~~~~~~~~~~~~i~~pvv---~D~~~~~~~~~~V~~iPt--------------~ilid~~G~iv~~~~G~~~ 524 (1057)
T PLN02919 463 KFDNE-KDLEAIRNAVLRYNISHPVV---NDGDMYLWRELGVSSWPT--------------FAVVSPNGKLIAQLSGEGH 524 (1057)
T ss_pred ccccc-ccHHHHHHHHHHhCCCccEE---ECCchHHHHhcCCCccce--------------EEEECCCCeEEEEEecccC
Confidence 443 34788999999999999988 566778999999999998 9999999999999988888
Q ss_pred hhHHHHHHHHHHHHH
Q 020776 305 VNSLADGIIKEIKQY 319 (321)
Q Consensus 305 ~~~l~~~l~~~L~~~ 319 (321)
.+++.+.|.+++.-+
T Consensus 525 ~~~l~~~l~~~l~~~ 539 (1057)
T PLN02919 525 RKDLDDLVEAALQYY 539 (1057)
T ss_pred HHHHHHHHHHHHHhh
Confidence 888888888887644
No 47
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.79 E-value=1.3e-18 Score=152.26 Aligned_cols=144 Identities=9% Similarity=0.001 Sum_probs=105.7
Q ss_pred CCCCCCCCCCCCeEEEcC----------CCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcE--
Q 020776 152 GPSVGKAAIGGPFKLINH----------DGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDI-- 219 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~----------~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v-- 219 (321)
...+|++.| ..++.+. +.+.++.++++||+.||+|||+||++ |..+.|.|.++. ++ |+.+
T Consensus 22 ~~~~~~~~p--~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~-c~~e~P~l~~l~----~~-~~~~~~ 93 (184)
T TIGR01626 22 NLQVEQSVP--SVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSA-KEXNASLIDAIK----AA-KFPPVK 93 (184)
T ss_pred hhhcCCcCC--ceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCCh-hhccchHHHHHH----Hc-CCCccc
Confidence 445666666 5555443 33567788899999999999999998 999999999993 22 3333
Q ss_pred --EEEEEeeCCCC-CCHHHHHHHHHHhCCCce---eecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCC
Q 020776 220 --VPAFISVDPER-DTVEQVREYVKEFHPKLI---GLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKM 293 (321)
Q Consensus 220 --~vV~IS~Dp~~-Dt~e~l~~~~~~~~~~~~---~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG 293 (321)
..+.|+.|... ++..-++.|+++.+..++ ++ .|..+.++..|++...|+ ++||||++|
T Consensus 94 y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vl---lD~~g~v~~~~gv~~~P~-------------T~fVIDk~G 157 (184)
T TIGR01626 94 YQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVV---LDDKGAVKNAWQLNSEDS-------------AIIVLDKTG 157 (184)
T ss_pred ccceEEEECccchhhHHHHHHHHHHHhcccCCcceEE---ECCcchHHHhcCCCCCCc-------------eEEEECCCC
Confidence 12667876321 133446667777777776 55 566778889999999887 149999999
Q ss_pred eEEEEeCCCCChhHHHHHHHHHHHHHh
Q 020776 294 EFVKFFGKNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 294 ~Iv~~~~~~~~~~~l~~~l~~~L~~~k 320 (321)
+|++.+.|..+.+++.+ +..+++++-
T Consensus 158 kVv~~~~G~l~~ee~e~-~~~li~~ll 183 (184)
T TIGR01626 158 KVKFVKEGALSDSDIQT-VISLVNGLL 183 (184)
T ss_pred cEEEEEeCCCCHHHHHH-HHHHHHHHh
Confidence 99999999988888766 777777653
No 48
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.78 E-value=1.9e-18 Score=144.85 Aligned_cols=129 Identities=15% Similarity=0.161 Sum_probs=100.5
Q ss_pred CCeEEEcCCCCeeeccccC-CCeEEE-EEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHH
Q 020776 162 GPFKLINHDGKNVTEKDFL-GKWTVI-YFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREY 239 (321)
Q Consensus 162 p~f~l~d~~G~~vsLsd~k-GK~vLL-~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~ 239 (321)
|+|+++|.+|+.++++++. +|++|| +||++|||. |..+++.|++++++++++ ++.+|+|+.|. .+.+.+|
T Consensus 3 p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~-C~~~~~~l~~~~~~~~~~---~v~vv~V~~~~----~~~~~~~ 74 (149)
T cd02970 3 PDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPF-CREYLRALSKLLPELDAL---GVELVAVGPES----PEKLEAF 74 (149)
T ss_pred CCccccCCCCCEEchHHHhcCCCEEEEEECCCCChh-HHHHHHHHHHHHHHHHhc---CeEEEEEeCCC----HHHHHHH
Confidence 4999999999999999875 465555 457999997 999999999999999866 68888998653 4667789
Q ss_pred HHHhCCCceeecCChHHHHHHHHHcCceEeecCC---------------CCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 240 VKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAE---------------EDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 240 ~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~---------------~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
.++++++|+++ .|....++++||+....... .+........|++||||++|+|++.+.+
T Consensus 75 ~~~~~~~~p~~---~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~~~ 148 (149)
T cd02970 75 DKGKFLPFPVY---ADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAHVD 148 (149)
T ss_pred HHhcCCCCeEE---ECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEecC
Confidence 99999999999 67788999999986432100 0001112345789999999999998754
No 49
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.75 E-value=1.9e-17 Score=144.15 Aligned_cols=115 Identities=14% Similarity=0.160 Sum_probs=91.8
Q ss_pred CCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHH
Q 020776 162 GPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVK 241 (321)
Q Consensus 162 p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~ 241 (321)
++|++ .+|+.+++++++ ||+||++|||+ |..++|.|++++++|+ +.+++|++|...
T Consensus 56 ~~f~l--~dG~~v~lsd~~----lV~FwaswCp~-C~~e~P~L~~l~~~~g------~~Vi~Vs~D~~~----------- 111 (181)
T PRK13728 56 RWFRL--SNGRQVNLADWK----VVLFMQGHCPY-CHQFDPVLKQLAQQYG------FSVFPYTLDGQG----------- 111 (181)
T ss_pred CccCC--CCCCEeehhHce----EEEEECCCCHh-HHHHHHHHHHHHHHcC------CEEEEEEeCCCC-----------
Confidence 47877 489999999997 77899999998 9999999999999872 677888988432
Q ss_pred HhCCCceeecCChHHHHHHHHHcCc--eEeecCCCCCCcccccceEEEEEcCCCeEEE-EeCCCCChhHHHHHHHHHHHH
Q 020776 242 EFHPKLIGLTGSPDEIRNIARAYRV--YYMKTAEEDSDYLVDHSIVMYLMSPKMEFVK-FFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 242 ~~~~~~~~l~~~~d~~~~~a~~ygv--~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~-~~~~~~~~~~l~~~l~~~L~~ 318 (321)
...|+.+.. +....+.+.|++ ..+|+ +||||++|++++ .+.|..+.+++.+.+.+++..
T Consensus 112 --~~~fPv~~d--d~~~~~~~~~g~~~~~iPt--------------tfLId~~G~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 112 --DTAFPEALP--APPDVMQTFFPNIPVATPT--------------TFLVNVNTLEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred --CCCCceEec--CchhHHHHHhCCCCCCCCe--------------EEEEeCCCcEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 157777732 233556778885 46666 999999999975 678999999998888888754
No 50
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.75 E-value=8.4e-18 Score=131.09 Aligned_cols=95 Identities=25% Similarity=0.435 Sum_probs=83.1
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
||+++|+||++||++ |..++|.|.+++++|++ +.++.+|+|+.| ++.+.++++.++++.+|..+....+....+
T Consensus 1 gK~~ll~fwa~~c~~-c~~~~~~l~~l~~~~~~--~~~v~~v~Vs~d---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 74 (95)
T PF13905_consen 1 GKPVLLYFWASWCPP-CKKELPKLKELYKKYKK--KDDVEFVFVSLD---EDEEEWKKFLKKNNFPWYNVPFDDDNNSEL 74 (95)
T ss_dssp TSEEEEEEE-TTSHH-HHHHHHHHHHHHHHHTT--TTTEEEEEEE-S---SSHHHHHHHHHTCTTSSEEEETTTHHHHHH
T ss_pred CCEEEEEEECCCCHH-HHHHHHHHHHHHHHhCC--CCCEEEEEEEeC---CCHHHHHHHHHhcCCCceEEeeCcchHHHH
Confidence 799999999999998 99999999999999984 347999999998 457899999999988898887777778899
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeE
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEF 295 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~I 295 (321)
.+.|++..+|+ ++|||++|+|
T Consensus 75 ~~~~~i~~iP~--------------~~lld~~G~I 95 (95)
T PF13905_consen 75 LKKYGINGIPT--------------LVLLDPDGKI 95 (95)
T ss_dssp HHHTT-TSSSE--------------EEEEETTSBE
T ss_pred HHHCCCCcCCE--------------EEEECCCCCC
Confidence 99999999888 9999999987
No 51
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=3.9e-17 Score=141.79 Aligned_cols=148 Identities=20% Similarity=0.294 Sum_probs=121.7
Q ss_pred CCCCCCCCCCCeEEEcC-CCC---eeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 153 PSVGKAAIGGPFKLINH-DGK---NVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~d~-~G~---~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
..||+.+| +|+.... .|. +++++++.|||++|+||.-...++|+.|+..+++.+++|++. ++++|++|+|.
T Consensus 3 ~lIg~~aP--~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~---g~eVigvS~Ds 77 (194)
T COG0450 3 SLIGKKAP--DFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKR---GVEVIGVSTDS 77 (194)
T ss_pred cccCCcCC--CcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHc---CCEEEEEecCc
Confidence 56899999 9999988 775 899999999999999999999999999999999999999987 78889999875
Q ss_pred CCCCHHHHHHHHHH----hC---CCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 229 ERDTVEQVREYVKE----FH---PKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 229 ~~Dt~e~l~~~~~~----~~---~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
+ ....+|.+. .+ ++|+.+ .|..+++++.||+...... ...+.+|||||+|+|++....
T Consensus 78 ~----fsH~aW~~~~~~~~gi~~i~~Pmi---aD~~~~vs~~ygvl~~~~g--------~a~R~~FIIDp~g~ir~~~v~ 142 (194)
T COG0450 78 V----FSHKAWKATIREAGGIGKIKFPMI---ADPKGEIARAYGVLHPEEG--------LALRGTFIIDPDGVIRHILVN 142 (194)
T ss_pred H----HHHHHHHhcHHhcCCccceecceE---EcCchhHHHHcCCcccCCC--------cceeEEEEECCCCeEEEEEEe
Confidence 4 555555554 34 678888 8999999999999764321 155779999999999998766
Q ss_pred CCChhHHHHHHHHHHHHHh
Q 020776 302 NNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 302 ~~~~~~l~~~l~~~L~~~k 320 (321)
........+++.+.+++++
T Consensus 143 ~~~iGRn~dEilR~idAlq 161 (194)
T COG0450 143 PLTIGRNVDEILRVIDALQ 161 (194)
T ss_pred cCCCCcCHHHHHHHHHHHH
Confidence 6666667777777777664
No 52
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.70 E-value=1.6e-16 Score=135.87 Aligned_cols=130 Identities=18% Similarity=0.184 Sum_probs=104.0
Q ss_pred CCCCCCCCCeEEEcCC---CCeeeccc-cCCCeEEEEE-ecCCCCCCcHHH-HHHHHHHHHHHhhhcCCcE-EEEEEeeC
Q 020776 155 VGKAAIGGPFKLINHD---GKNVTEKD-FLGKWTVIYF-GFTHCPDICPDE-LQKLAAAVDKIKENSGIDI-VPAFISVD 227 (321)
Q Consensus 155 vG~~aP~p~f~l~d~~---G~~vsLsd-~kGK~vLL~F-watwCp~vC~~e-lp~L~~l~~~~~~~~g~~v-~vV~IS~D 227 (321)
+|+++| +|++.+.+ |+.++|++ ++||++||+| +..|||. |..| ++.+++.+++|++. ++ .+++||.
T Consensus 1 vG~~aP--dF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~-Ct~e~~~~~~~~~~~f~~~---g~~~V~~iS~- 73 (155)
T cd03013 1 VGDKLP--NVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPT-CSAQHLPGYVENADELKAK---GVDEVICVSV- 73 (155)
T ss_pred CCCcCC--CeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCC-CchhHHHHHHHhHHHHHHC---CCCEEEEEEC-
Confidence 578888 99999986 99999999 5888776655 5899995 9999 99999999999876 55 4788896
Q ss_pred CCCCCHHHHHHHHHHhCC--CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 228 PERDTVEQVREYVKEFHP--KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 228 p~~Dt~e~l~~~~~~~~~--~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
|++...++|+++++. +|+.+ .|...+++++||+........ ......+.+|||| +|+|++.+..
T Consensus 74 ---D~~~~~~~~~~~~~~~~~f~lL---sD~~~~~~~~ygv~~~~~~~~---~~~~~~R~~fiId-~g~I~~~~~~ 139 (155)
T cd03013 74 ---NDPFVMKAWGKALGAKDKIRFL---ADGNGEFTKALGLTLDLSAAG---GGIRSKRYALIVD-DGKVKYLFVE 139 (155)
T ss_pred ---CCHHHHHHHHHhhCCCCcEEEE---ECCCHHHHHHcCCCccccccC---CcceeeeEEEEEC-CCEEEEEEEe
Confidence 567899999999997 89999 777899999999975432100 1112457899999 7999987643
No 53
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=99.61 E-value=2.2e-15 Score=127.10 Aligned_cols=117 Identities=25% Similarity=0.401 Sum_probs=105.6
Q ss_pred eEEEcCCCCeeecc-ccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHH
Q 020776 164 FKLINHDGKNVTEK-DFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKE 242 (321)
Q Consensus 164 f~l~d~~G~~vsLs-d~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~ 242 (321)
..|.+.+|..+..+ .++||+|.++|-|.|||| |+.-.|.|.++|++++++ +..+.+|+||.|. +.+.+..|..+
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~p-CR~FTP~Lk~fYe~l~~~-~~~fEVvfVS~D~---~~~~~~~y~~~ 89 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPP-CRDFTPILKDFYEELKDN-AAPFEVVFVSSDR---DEESLDEYMLE 89 (157)
T ss_pred CeeeccCCccchHhHhhCCcEEEEEEEEEECCc-hhhCCchHHHHHHHHHhc-CCceEEEEEecCC---CHHHHHHHHHh
Confidence 57788889888776 689999999999999999 999999999999999987 6689999999983 46899999999
Q ss_pred hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe
Q 020776 243 FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF 299 (321)
Q Consensus 243 ~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~ 299 (321)
++.+|..+....+...++.++|.|..+|. +.+++++|.++...
T Consensus 90 ~~~~W~~iPf~d~~~~~l~~ky~v~~iP~--------------l~i~~~dG~~v~~d 132 (157)
T KOG2501|consen 90 HHGDWLAIPFGDDLIQKLSEKYEVKGIPA--------------LVILKPDGTVVTED 132 (157)
T ss_pred cCCCeEEecCCCHHHHHHHHhcccCcCce--------------eEEecCCCCEehHh
Confidence 99999999888889999999999999998 89999999887653
No 54
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.56 E-value=3.2e-14 Score=121.41 Aligned_cols=105 Identities=13% Similarity=0.222 Sum_probs=71.9
Q ss_pred CCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceee
Q 020776 171 GKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGL 250 (321)
Q Consensus 171 G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l 250 (321)
|+.+++++ +.||+||++||++ |+.++|.|++++++++ +.+++|++|... . + .|+..
T Consensus 44 G~~~~l~~----~~lvnFWAsWCpp-Cr~e~P~L~~l~~~~~------~~Vi~Vs~d~~~-----~----~----~fp~~ 99 (153)
T TIGR02738 44 GRHANQDD----YALVFFYQSTCPY-CHQFAPVLKRFSQQFG------LPVYAFSLDGQG-----L----T----GFPDP 99 (153)
T ss_pred chhhhcCC----CEEEEEECCCChh-HHHHHHHHHHHHHHcC------CcEEEEEeCCCc-----c----c----ccccc
Confidence 66666655 4599999999998 9999999999998872 456778887431 1 1 23322
Q ss_pred cCChHHHHHHHHHc---CceEeecCCCCCCcccccceEEEEEcCCCeEE-EEeCCCCChhHHHHHHHHH
Q 020776 251 TGSPDEIRNIARAY---RVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFV-KFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 251 ~~~~d~~~~~a~~y---gv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv-~~~~~~~~~~~l~~~l~~~ 315 (321)
.. .+. ......| ++...|+ +||||++|.++ ..+.|..+.+++.+.|.++
T Consensus 100 ~~-~~~-~~~~~~~~~~~v~~iPT--------------t~LID~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 100 LP-ATP-EVMQTFFPNPRPVVTPA--------------TFLVNVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred cC-Cch-HHHHHHhccCCCCCCCe--------------EEEEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 11 111 1223445 6667776 99999998864 4677888888877776654
No 55
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.56 E-value=7.5e-15 Score=123.79 Aligned_cols=109 Identities=15% Similarity=0.090 Sum_probs=84.9
Q ss_pred EEEcCCCCeeeccc--cCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHH
Q 020776 165 KLINHDGKNVTEKD--FLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKE 242 (321)
Q Consensus 165 ~l~d~~G~~vsLsd--~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~ 242 (321)
++++.+++...+.+ .+||++||+||++||++ |..+.|.|.++++++.+ .+.++.|++|.+.
T Consensus 2 ~~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~-C~~~~p~l~~l~~~~~~----~~~~v~v~vd~~~------------ 64 (142)
T cd02950 2 SLEQLAASSTPPEVALSNGKPTLVEFYADWCTV-CQEMAPDVAKLKQKYGD----QVNFVMLNVDNPK------------ 64 (142)
T ss_pred ChHHHhhccCCHHHHHhCCCEEEEEEECCcCHH-HHHhHHHHHHHHHHhcc----CeeEEEEEcCCcc------------
Confidence 34555555555544 36899999999999998 99999999999999864 3667778876321
Q ss_pred hCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 243 FHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 243 ~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
...+++.|+|..+|+ ++++|++|+++..+.|....+++.+.|.++++.
T Consensus 65 --------------~~~~~~~~~V~~iPt--------------~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~~ 112 (142)
T cd02950 65 --------------WLPEIDRYRVDGIPH--------------FVFLDREGNEEGQSIGLQPKQVLAQNLDALVAG 112 (142)
T ss_pred --------------cHHHHHHcCCCCCCE--------------EEEECCCCCEEEEEeCCCCHHHHHHHHHHHHcC
Confidence 023467899988887 899999999999988888888888887777653
No 56
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=1.9e-13 Score=114.23 Aligned_cols=143 Identities=15% Similarity=0.209 Sum_probs=108.2
Q ss_pred CeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC----CCCCCHHHHHH
Q 020776 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD----PERDTVEQVRE 238 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D----p~~Dt~e~l~~ 238 (321)
+|++++.+|++++|++++||++||.-.||.|.. -+ +...|+.+|++|+++ .+.++++.++ .+..+.+++++
T Consensus 7 d~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGf-Tp-QYegLe~Ly~ky~~~---Gf~VLgFPcNQF~~QEPg~~eEI~~ 81 (162)
T COG0386 7 DFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGF-TP-QYEGLEALYKKYKDK---GFEVLGFPCNQFGGQEPGSDEEIAK 81 (162)
T ss_pred cceeeccCCCCccHHHhCCcEEEEEEcccccCC-cH-hHHHHHHHHHHHhhC---CcEEEeccccccccCCCCCHHHHHH
Confidence 899999999999999999999999999999995 44 899999999999988 5777877764 23356799999
Q ss_pred HHHH-hCCCceeecC------ChHHHHH-HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 239 YVKE-FHPKLIGLTG------SPDEIRN-IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 239 ~~~~-~~~~~~~l~~------~~d~~~~-~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
|++. ++.+|+.+.- ..++.-. +..+-.- ....-.+.+..+-||||++|+|+.+|.....++++..
T Consensus 82 fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g-------~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~ 154 (162)
T COG0386 82 FCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPG-------KLGGKDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIEL 154 (162)
T ss_pred HHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCC-------CccCCccceeeEEEEEcCCCcEEEeeCCCCChhhHHH
Confidence 9985 5788876631 1111111 1111100 0011234566678999999999999999999999999
Q ss_pred HHHHHHH
Q 020776 311 GIIKEIK 317 (321)
Q Consensus 311 ~l~~~L~ 317 (321)
.|+++|+
T Consensus 155 ~Ie~lL~ 161 (162)
T COG0386 155 AIEKLLA 161 (162)
T ss_pred HHHHHhc
Confidence 9998875
No 57
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.45 E-value=5.9e-13 Score=105.90 Aligned_cols=89 Identities=13% Similarity=0.187 Sum_probs=68.1
Q ss_pred ccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHH
Q 020776 178 DFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEI 257 (321)
Q Consensus 178 d~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~ 257 (321)
+.+||+|||+||++||++ |+.+.|.|+++.+++ . ++.++.|+.|.. +..
T Consensus 12 ~~~~k~vvv~F~a~wC~~-C~~~~p~l~~la~~~-~----~v~~~~vd~d~~-------------------------~~~ 60 (103)
T cd02985 12 KAKGRLVVLEFALKHSGP-SVKIYPTMVKLSRTC-N----DVVFLLVNGDEN-------------------------DST 60 (103)
T ss_pred HcCCCEEEEEEECCCCHh-HHHHhHHHHHHHHHC-C----CCEEEEEECCCC-------------------------hHH
Confidence 346999999999999998 999999999999988 2 466677776532 112
Q ss_pred HHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHH
Q 020776 258 RNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGII 313 (321)
Q Consensus 258 ~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~ 313 (321)
..+++.|+|...|+ +++.++|+++..+.| .+++++...+.
T Consensus 61 ~~l~~~~~V~~~Pt---------------~~~~~~G~~v~~~~G-~~~~~l~~~~~ 100 (103)
T cd02985 61 MELCRREKIIEVPH---------------FLFYKDGEKIHEEEG-IGPDELIGDVL 100 (103)
T ss_pred HHHHHHcCCCcCCE---------------EEEEeCCeEEEEEeC-CCHHHHHHHHH
Confidence 35678899998885 555599999998866 55666666554
No 58
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2.8e-12 Score=108.34 Aligned_cols=147 Identities=15% Similarity=0.110 Sum_probs=119.0
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeeccccCCC-eEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTEKDFLGK-WTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER 230 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK-~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~ 230 (321)
...+|+++| ||+|.|.||+.++|.++.|+ +||++|+..-..|-|..+.-.++.-|++++.. ...|+++|.|
T Consensus 62 ~v~~Gd~iP--D~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka---~aeV~GlS~D--- 133 (211)
T KOG0855|consen 62 KVNKGDAIP--DFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKA---GAEVIGLSGD--- 133 (211)
T ss_pred eeecCCcCC--CcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhc---CceEEeeccC---
Confidence 567899999 99999999999999999875 88888886665556999999999999999875 5677889964
Q ss_pred CCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 231 DTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
+....++|..+++++|..+ .|+.+++.+.+|+...|-.. ...+..||+|+.|.....+...+.++...+
T Consensus 134 -~s~sqKaF~sKqnlPYhLL---SDpk~e~ik~lGa~k~p~gg-------~~~Rsh~if~kg~~k~~ik~~~isPevsvd 202 (211)
T KOG0855|consen 134 -DSASQKAFASKQNLPYHLL---SDPKNEVIKDLGAPKDPFGG-------LPGRSHYIFDKGGVKQLIKNNQISPEVSVD 202 (211)
T ss_pred -chHHHHHhhhhccCCeeee---cCcchhHHHHhCCCCCCCCC-------cccceEEEEecCCeEEEEEecccCccccHH
Confidence 5688999999999999999 89999999999998776421 233558999998877666666777776666
Q ss_pred HHHHHHH
Q 020776 311 GIIKEIK 317 (321)
Q Consensus 311 ~l~~~L~ 317 (321)
+-.+.+.
T Consensus 203 ~a~k~~~ 209 (211)
T KOG0855|consen 203 EALKFLK 209 (211)
T ss_pred HHHHHHh
Confidence 6555543
No 59
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.35 E-value=6.6e-12 Score=102.93 Aligned_cols=105 Identities=19% Similarity=0.324 Sum_probs=79.0
Q ss_pred CC-CeEEEEEecCCCCCCcHHHHHHHH---HHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChH
Q 020776 180 LG-KWTVIYFGFTHCPDICPDELQKLA---AAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPD 255 (321)
Q Consensus 180 kG-K~vLL~FwatwCp~vC~~elp~L~---~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d 255 (321)
.| |+|||+||++||++ |..+.+.+. ++.+.+++ ++.++.|++|.... +..| .. ...
T Consensus 12 ~~~k~vlv~f~a~wC~~-C~~~~~~~~~~~~~~~~~~~----~~~~~~i~~d~~~~----~~~~--------~~---~~~ 71 (125)
T cd02951 12 DGKKPLLLLFSQPGCPY-CDKLKRDYLNDPAVQAYIRA----HFVVVYINIDGDKE----VTDF--------DG---EAL 71 (125)
T ss_pred cCCCcEEEEEeCCCCHH-HHHHHHHhcCcHHHHHHHHh----heEEEEEEccCCce----eecc--------CC---CCc
Confidence 57 99999999999998 999999885 56666653 47777788764321 1111 11 122
Q ss_pred HHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCC-CeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 256 EIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPK-MEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 256 ~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~d-G~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
....+++.|++...|+ ++++|++ |+++..+.|..+.+.+.+.|..++.+
T Consensus 72 ~~~~l~~~~~v~~~Pt--------------~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 72 SEKELARKYRVRFTPT--------------VIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred cHHHHHHHcCCccccE--------------EEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 4567899999999988 9999999 89999998888888888888777654
No 60
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=9.2e-12 Score=104.39 Aligned_cols=89 Identities=18% Similarity=0.114 Sum_probs=76.4
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
++||||+|||+||.| |+...|.|+++..+|..+ +.+.-|++|.+ .++
T Consensus 61 ~~PVlVdF~A~WCgP-Ck~l~P~l~~~~~~~~g~----~k~~kvdtD~~----------------------------~el 107 (150)
T KOG0910|consen 61 DVPVLVDFHAEWCGP-CKMLGPILEELVSEYAGK----FKLYKVDTDEH----------------------------PEL 107 (150)
T ss_pred CCCEEEEEecCcCcc-HhHhhHHHHHHHHhhcCe----EEEEEEccccc----------------------------cch
Confidence 689999999999999 999999999999999654 77776776532 456
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
+..|+|.+.| ++|+=++|+.+..+.|..+.+.+.+.|++.++
T Consensus 108 a~~Y~I~avP---------------tvlvfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 108 AEDYEISAVP---------------TVLVFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred Hhhcceeeee---------------EEEEEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 8899999999 46777899999999999999999998888775
No 61
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.32 E-value=5.6e-12 Score=117.26 Aligned_cols=109 Identities=21% Similarity=0.248 Sum_probs=83.5
Q ss_pred CCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceee
Q 020776 171 GKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGL 250 (321)
Q Consensus 171 G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l 250 (321)
.+...+++++|+++||+||++||++ |..++|.|+++.++|+ +.+++|++|.... ..|+.+
T Consensus 156 ~~~~~l~~l~~k~~Lv~F~AswCp~-C~~~~P~L~~la~~yg------~~Vi~VsvD~~~~-------------~~fp~~ 215 (271)
T TIGR02740 156 QKDRVMKDLAKKSGLFFFFKSDCPY-CHQQAPILQAFEDRYG------IEVLPVSVDGGPL-------------PGFPNA 215 (271)
T ss_pred HHHHHHHHhcCCeEEEEEECCCCcc-HHHHhHHHHHHHHHcC------cEEEEEeCCCCcc-------------ccCCcc
Confidence 3457788999999999999999998 9999999999998873 6677888875321 123333
Q ss_pred cCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCC-CeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 251 TGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPK-MEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 251 ~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~d-G~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
+.+..+++.|||..+|+ +||+|++ |++.....|..+.+++.+.+..+..
T Consensus 216 ----~~d~~la~~~gV~~vPt--------------l~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 216 ----RPDAGQAQQLKIRTVPA--------------VFLADPDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred ----cCCHHHHHHcCCCcCCe--------------EEEEECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 12245788999999888 9999995 6665556688888888888876643
No 62
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=2.1e-11 Score=103.89 Aligned_cols=146 Identities=18% Similarity=0.223 Sum_probs=113.1
Q ss_pred CCCCCCCCCeEEE---cCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCC
Q 020776 155 VGKAAIGGPFKLI---NHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERD 231 (321)
Q Consensus 155 vG~~aP~p~f~l~---d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~D 231 (321)
+..++| +|.-+ |-.-+.++|++++||+|++.|+.-.-..||+.|+-.+.+.+.+|++. +.+||++|+|..
T Consensus 6 ~~~p~p--~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~---n~eVig~S~DS~-- 78 (196)
T KOG0852|consen 6 VFKPAP--DFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKL---NTEVLGISTDSV-- 78 (196)
T ss_pred cCCCCC--CcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhc---CCeEEEEeccch--
Confidence 344555 87654 44557899999999999999998888889999999999999999876 788899998754
Q ss_pred CHHHHHHHHH---HhC----CCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCC
Q 020776 232 TVEQVREYVK---EFH----PKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNND 304 (321)
Q Consensus 232 t~e~l~~~~~---~~~----~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~ 304 (321)
....+|++ +.+ .+++.+ .|...++++.|||.....+ ..-+..||||++|.++.....+..
T Consensus 79 --fshlAW~ntprk~gGlg~~~iPll---sD~~~~IsrdyGvL~~~~G--------~~lRglfIId~~gi~R~it~NDlp 145 (196)
T KOG0852|consen 79 --FSHLAWINTPRKQGGLGPLNIPLL---SDLNHEISRDYGVLKEDEG--------IALRGLFIIDPDGILRQITINDLP 145 (196)
T ss_pred --hhhhhHhcCchhhCCcCcccccee---eccchhhHHhcCceecCCC--------cceeeeEEEccccceEEeeecccC
Confidence 44444443 332 458888 8999999999999875432 233569999999999987666666
Q ss_pred hhHHHHHHHHHHHHHh
Q 020776 305 VNSLADGIIKEIKQYK 320 (321)
Q Consensus 305 ~~~l~~~l~~~L~~~k 320 (321)
...-.++..+++++++
T Consensus 146 vgRSVdE~lRLvqAfQ 161 (196)
T KOG0852|consen 146 VGRSVDETLRLVQAFQ 161 (196)
T ss_pred CCccHHHHHHHHHHHh
Confidence 6677778888887765
No 63
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.30 E-value=2e-11 Score=95.11 Aligned_cols=85 Identities=20% Similarity=0.218 Sum_probs=68.1
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
+|+++||+||++||++ |....|.++++.+.+.+ .+.++.|++|.+ ..
T Consensus 11 ~~~~vlv~f~a~wC~~-C~~~~~~~~~~~~~~~~----~~~~~~vd~~~~----------------------------~~ 57 (96)
T cd02956 11 TQVPVVVDFWAPRSPP-SKELLPLLERLAEEYQG----QFVLAKVNCDAQ----------------------------PQ 57 (96)
T ss_pred CCCeEEEEEECCCChH-HHHHHHHHHHHHHHhCC----cEEEEEEeccCC----------------------------HH
Confidence 5889999999999998 99999999999998853 366666665431 34
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
++++|++...|+ +++++ +|+++..+.|..+.+++.+.|
T Consensus 58 l~~~~~i~~~Pt--------------~~~~~-~g~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 58 IAQQFGVQALPT--------------VYLFA-AGQPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred HHHHcCCCCCCE--------------EEEEe-CCEEeeeecCCCCHHHHHHHh
Confidence 678899998887 77776 999998888888877766654
No 64
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.29 E-value=8.5e-12 Score=98.86 Aligned_cols=85 Identities=16% Similarity=0.133 Sum_probs=64.3
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHH
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDE 256 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~ 256 (321)
++++||++||+||++||++ |+.+.|.+.++.++++ ++.++.|..|. .
T Consensus 14 ~~~~g~~vlV~F~a~WC~~-C~~~~p~l~~la~~~~-----~~~~~~vd~~~---------------------------~ 60 (100)
T cd02999 14 AFNREDYTAVLFYASWCPF-SASFRPHFNALSSMFP-----QIRHLAIEESS---------------------------I 60 (100)
T ss_pred HhcCCCEEEEEEECCCCHH-HHhHhHHHHHHHHHhc-----cCceEEEECCC---------------------------C
Confidence 4578999999999999998 9999999999999885 24445554220 1
Q ss_pred HHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 257 IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 257 ~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
...++++|+|...|+ +++++ +| .+..+.|..+.+.+.+
T Consensus 61 ~~~l~~~~~V~~~PT--------------~~lf~-~g-~~~~~~G~~~~~~l~~ 98 (100)
T cd02999 61 KPSLLSRYGVVGFPT--------------ILLFN-ST-PRVRYNGTRTLDSLAA 98 (100)
T ss_pred CHHHHHhcCCeecCE--------------EEEEc-CC-ceeEecCCCCHHHHHh
Confidence 135678899999997 77776 45 5667778777776654
No 65
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.29 E-value=2.1e-11 Score=96.68 Aligned_cols=86 Identities=16% Similarity=0.169 Sum_probs=65.4
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+++++|+||++||++ |+.+.|.|.++++++++. .+.++.++.| . .+
T Consensus 16 ~~~~vvv~F~a~wC~~-Ck~~~p~l~~~~~~~~~~---~~~~~~vd~d-~----------------------------~~ 62 (102)
T cd02948 16 NKGLTVVDVYQEWCGP-CKAVVSLFKKIKNELGDD---LLHFATAEAD-T----------------------------ID 62 (102)
T ss_pred cCCeEEEEEECCcCHh-HHHHhHHHHHHHHHcCCC---cEEEEEEeCC-C----------------------------HH
Confidence 4899999999999998 999999999999988643 4566666644 1 23
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
++++|+|...|+ +++.++|+++.+..| .+.+.+.+.|.+
T Consensus 63 ~~~~~~v~~~Pt---------------~~~~~~g~~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 63 TLKRYRGKCEPT---------------FLFYKNGELVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred HHHHcCCCcCcE---------------EEEEECCEEEEEEec-CChHHHHHHHhh
Confidence 568899998884 666689999988766 366665555543
No 66
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.8e-11 Score=103.68 Aligned_cols=144 Identities=17% Similarity=0.239 Sum_probs=107.4
Q ss_pred CeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC----CCCCCHHHHHH
Q 020776 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD----PERDTVEQVRE 238 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D----p~~Dt~e~l~~ 238 (321)
+|+..|.+|+.|+|+.|+||++||.-.||.|.. -......|+.++++|+++ .+++++..++ .|..+.+++..
T Consensus 16 df~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~-T~~~Y~~l~~L~~ky~~~---Gl~ILaFPCNQFg~QEp~~n~Ei~~ 91 (171)
T KOG1651|consen 16 DFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGL-TESQYTELNELYEKYKDQ---GLEILAFPCNQFGNQEPGSNEEILN 91 (171)
T ss_pred eeEEecCCCCCccHHHhCCeEEEEEEccccccc-chhcchhHHHHHHHHhhC---CeEEEEeccccccCcCCCCcHHHHH
Confidence 899999999999999999999999999999997 777888999999999988 5777777764 22345577777
Q ss_pred HHH-HhCCCceeec-----C-ChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHH
Q 020776 239 YVK-EFHPKLIGLT-----G-SPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADG 311 (321)
Q Consensus 239 ~~~-~~~~~~~~l~-----~-~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~ 311 (321)
++. +++..|+++. | ..++.-++.+.=... + -++ .+.+...-||||++|.++.+|....++.++..+
T Consensus 92 f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~--~----lg~-~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~d 164 (171)
T KOG1651|consen 92 FVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGG--P----LGD-DIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKD 164 (171)
T ss_pred HHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCC--c----ccc-cceeeeEEEeECCCCcEEEeeCCCCCccccchh
Confidence 774 6677776542 2 123333333221100 0 111 455666789999999999999888888888888
Q ss_pred HHHHHH
Q 020776 312 IIKEIK 317 (321)
Q Consensus 312 l~~~L~ 317 (321)
|+++|.
T Consensus 165 Ie~lL~ 170 (171)
T KOG1651|consen 165 IEKLLA 170 (171)
T ss_pred HHHHhc
Confidence 888875
No 67
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.25 E-value=3.6e-11 Score=96.94 Aligned_cols=90 Identities=11% Similarity=0.071 Sum_probs=70.6
Q ss_pred ccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHH
Q 020776 178 DFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEI 257 (321)
Q Consensus 178 d~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~ 257 (321)
..+|+++||+||++||++ |....|.+.++.+++++. ++.++.|++|. .
T Consensus 21 ~~~~~~vlV~F~a~wC~~-C~~~~p~~~~l~~~~~~~---~v~~~~vd~d~----------------------------~ 68 (111)
T cd02963 21 KSFKKPYLIKITSDWCFS-CIHIEPVWKEVIQELEPL---GVGIATVNAGH----------------------------E 68 (111)
T ss_pred ccCCCeEEEEEECCccHh-HHHhhHHHHHHHHHHHhc---CceEEEEeccc----------------------------c
Confidence 346899999999999998 999999999999999753 46666666542 1
Q ss_pred HHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 258 RNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 258 ~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
..++++|+|...|+ ++++ ++|+++.++.|..+.+.+.+.|.+
T Consensus 69 ~~l~~~~~V~~~Pt--------------~~i~-~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 69 RRLARKLGAHSVPA--------------IVGI-INGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred HHHHHHcCCccCCE--------------EEEE-ECCEEEEEecCCCCHHHHHHHHhc
Confidence 34678899999886 6666 599999888888887766665543
No 68
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.24 E-value=2.7e-11 Score=95.96 Aligned_cols=90 Identities=14% Similarity=0.173 Sum_probs=69.7
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHH---HHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKL---AAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDE 256 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L---~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~ 256 (321)
.||++||+||++||++ |....+.+ .++.+.+.+ ++.++.|+++.+ .+.
T Consensus 10 ~~k~vlv~f~a~wC~~-C~~~~~~~~~~~~~~~~~~~----~~~~~~vd~~~~------------------------~~~ 60 (104)
T cd02953 10 QGKPVFVDFTADWCVT-CKVNEKVVFSDPEVQAALKK----DVVLLRADWTKN------------------------DPE 60 (104)
T ss_pred cCCeEEEEEEcchhHH-HHHHHHHhcCCHHHHHHHhC----CeEEEEEecCCC------------------------CHH
Confidence 5899999999999998 99998887 567777753 477676665421 122
Q ss_pred HHHHHHHcCceEeecCCCCCCcccccceEEEEEcC-CCeEEEEeCCCCChhHHHHHH
Q 020776 257 IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSP-KMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 257 ~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~-dG~Iv~~~~~~~~~~~l~~~l 312 (321)
...++++|++..+|+ ++++++ +|+++.++.|..+.+++.+.|
T Consensus 61 ~~~~~~~~~i~~~Pt--------------i~~~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 61 ITALLKRFGVFGPPT--------------YLFYGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred HHHHHHHcCCCCCCE--------------EEEECCCCCCCCcccccccCHHHHHHHh
Confidence 346778899988887 899999 999999988888887766554
No 69
>PRK09381 trxA thioredoxin; Provisional
Probab=99.22 E-value=7.7e-11 Score=94.08 Aligned_cols=89 Identities=15% Similarity=0.132 Sum_probs=70.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+++++|+||++||++ |....|.++++.+++.+ ++.++.|++|.. ..
T Consensus 20 ~~~~vvv~f~~~~C~~-C~~~~p~~~~l~~~~~~----~~~~~~vd~~~~----------------------------~~ 66 (109)
T PRK09381 20 ADGAILVDFWAEWCGP-CKMIAPILDEIADEYQG----KLTVAKLNIDQN----------------------------PG 66 (109)
T ss_pred CCCeEEEEEECCCCHH-HHHHhHHHHHHHHHhCC----CcEEEEEECCCC----------------------------hh
Confidence 3789999999999998 99999999999999864 366666776531 12
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
+++.|++...|+ ++++ ++|+++..+.|..+.+++.+.|.+.|
T Consensus 67 ~~~~~~v~~~Pt--------------~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 67 TAPKYGIRGIPT--------------LLLF-KNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred HHHhCCCCcCCE--------------EEEE-eCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 467789888886 5666 79999999888888887777776654
No 70
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.21 E-value=3.2e-11 Score=96.49 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=71.1
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
+||++||+||.+|||+ |....+.+.+..+ +......++.++.++++. ..+....+....+... + .....+
T Consensus 4 ~~k~~v~~F~~~~C~~-C~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~---~~~~~~ 73 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPY-CKKLEKELFPDND-VARYLKDDFQVIFVNIDD---SRDESEAVLDFDGQKN--V---RLSNKE 73 (112)
T ss_dssp TSSEEEEEEE-TT-HH-HHHHHHHHHHHHH-HHCEEHCECEEEECESHS---HHHHHHHHHSHTCHSS--C---HHHHHH
T ss_pred CCCEEEEEEECCCCHH-HHHHHHHHHHHHH-HHHHhhcCeEEEEEecCC---cccccccccccccchh--h---hHHHHH
Confidence 5899999999999998 9988888886543 211111246677777652 2333334444433211 1 345568
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
+++.|||.++|+ ++++|++|+++..+.|..+++++.+.|
T Consensus 74 l~~~~~v~gtPt--------------~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 74 LAQRYGVNGTPT--------------IVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHHHTT--SSSE--------------EEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred HHHHcCCCccCE--------------EEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 999999999998 999999999999888989888777653
No 71
>PHA02278 thioredoxin-like protein
Probab=99.20 E-value=8.3e-11 Score=93.84 Aligned_cols=87 Identities=10% Similarity=0.100 Sum_probs=67.2
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
+++++||+||++||++ |+...|.+.++.+++.. ++.++.|++|.+. .| ..+
T Consensus 13 ~~~~vvV~F~A~WCgp-Ck~m~p~l~~l~~~~~~----~~~~~~vdvd~~~-----------------------~d-~~~ 63 (103)
T PHA02278 13 QKKDVIVMITQDNCGK-CEILKSVIPMFQESGDI----KKPILTLNLDAED-----------------------VD-REK 63 (103)
T ss_pred CCCcEEEEEECCCCHH-HHhHHHHHHHHHhhhcC----CceEEEEECCccc-----------------------cc-cHH
Confidence 5889999999999998 99999999999877532 3556777777421 01 234
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
+++.|+|..+| ++++-++|+++.+..|..+.+.+.+
T Consensus 64 l~~~~~I~~iP---------------T~i~fk~G~~v~~~~G~~~~~~l~~ 99 (103)
T PHA02278 64 AVKLFDIMSTP---------------VLIGYKDGQLVKKYEDQVTPMQLQE 99 (103)
T ss_pred HHHHCCCcccc---------------EEEEEECCEEEEEEeCCCCHHHHHh
Confidence 78899999999 4777789999999888777665443
No 72
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=6.9e-10 Score=92.68 Aligned_cols=131 Identities=21% Similarity=0.225 Sum_probs=107.4
Q ss_pred cCCCCCCCCCCCCCeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC
Q 020776 150 KQGPSVGKAAIGGPFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE 229 (321)
Q Consensus 150 ~~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~ 229 (321)
...+++|+++| +|++.+.+.+.++++++.||..+|..+.+-..++|..+..++++...++. ++.++.||.
T Consensus 15 g~~~~vGd~ap--~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~-----~~~Vl~IS~--- 84 (158)
T COG2077 15 GNEPQVGDKAP--DFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLG-----NTVVLCISM--- 84 (158)
T ss_pred CCCCccCCcCC--ceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccC-----CcEEEEEeC---
Confidence 34689999999 99999999999999999999999999999998899999999999988885 467788885
Q ss_pred CCCHHHHHHHHHHhCCC-ceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEE
Q 020776 230 RDTVEQVREYVKEFHPK-LIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKF 298 (321)
Q Consensus 230 ~Dt~e~l~~~~~~~~~~-~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~ 298 (321)
|.|...++|+..+|++ ...+ +.-.+..+.++||+....-+.+ ---.+++|++|.+|+|++.
T Consensus 85 -DLPFAq~RfC~aeGi~nv~~l--Sd~r~~~Fge~yGv~I~egpL~-----gLlARaV~V~De~g~V~y~ 146 (158)
T COG2077 85 -DLPFAQKRFCGAEGIENVITL--SDFRDRAFGENYGVLINEGPLA-----GLLARAVFVLDENGKVTYS 146 (158)
T ss_pred -CChhHHhhhhhhcCcccceEh--hhhhhhhhhHhhCEEecccccc-----CeeeeEEEEEcCCCcEEEE
Confidence 6799999999999976 4444 2234567889999876432111 1234779999999999986
No 73
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.17 E-value=9.7e-11 Score=92.29 Aligned_cols=94 Identities=15% Similarity=0.187 Sum_probs=70.0
Q ss_pred CCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCce
Q 020776 169 HDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLI 248 (321)
Q Consensus 169 ~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~ 248 (321)
.+++.+...-..+++++|+||++||++ |....|.+.++.+++++ .+.+..|++|.+
T Consensus 6 l~~~~f~~~v~~~~~~~v~f~a~wC~~-C~~~~p~~~~~a~~~~~----~~~~~~vd~~~~------------------- 61 (101)
T cd03003 6 LDRGDFDAAVNSGEIWFVNFYSPRCSH-CHDLAPTWREFAKEMDG----VIRIGAVNCGDD------------------- 61 (101)
T ss_pred cCHhhHHHHhcCCCeEEEEEECCCChH-HHHhHHHHHHHHHHhcC----ceEEEEEeCCcc-------------------
Confidence 344444433345789999999999998 99999999999999863 377777776531
Q ss_pred eecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 249 GLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 249 ~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
..++++|+|...|+ ++++ ++|+.+..+.|..+.+.+.+
T Consensus 62 ---------~~~~~~~~v~~~Pt--------------~~~~-~~g~~~~~~~G~~~~~~l~~ 99 (101)
T cd03003 62 ---------RMLCRSQGVNSYPS--------------LYVF-PSGMNPEKYYGDRSKESLVK 99 (101)
T ss_pred ---------HHHHHHcCCCccCE--------------EEEE-cCCCCcccCCCCCCHHHHHh
Confidence 24577889988885 4444 88988888888887766543
No 74
>PRK10996 thioredoxin 2; Provisional
Probab=99.16 E-value=2.4e-10 Score=95.89 Aligned_cols=88 Identities=10% Similarity=0.119 Sum_probs=69.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|+++|+||++||++ |+...+.|.++++++.+ ++.++.|++|. ...
T Consensus 51 ~~k~vvv~F~a~wC~~-C~~~~~~l~~l~~~~~~----~v~~~~vd~~~----------------------------~~~ 97 (139)
T PRK10996 51 DDLPVVIDFWAPWCGP-CRNFAPIFEDVAAERSG----KVRFVKVNTEA----------------------------ERE 97 (139)
T ss_pred CCCeEEEEEECCCCHH-HHHHHHHHHHHHHHhCC----CeEEEEEeCCC----------------------------CHH
Confidence 4899999999999998 99999999999988753 46666665432 134
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
++++|+|...|+ +++ .++|+++..+.|..+.+.+.+.|.++
T Consensus 98 l~~~~~V~~~Pt--------------lii-~~~G~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 98 LSARFRIRSIPT--------------IMI-FKNGQVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred HHHhcCCCccCE--------------EEE-EECCEEEEEEcCCCCHHHHHHHHHHh
Confidence 678899998885 444 46999999988888887777777654
No 75
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.16 E-value=1.1e-10 Score=94.51 Aligned_cols=78 Identities=18% Similarity=0.221 Sum_probs=62.9
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+++|||+||++||++ |+...|.|.++.+++.+. +.++-|++|. ..+
T Consensus 13 ~~~~vVV~F~A~WCgp-Ck~m~P~le~la~~~~~~----v~f~kVDvD~----------------------------~~~ 59 (114)
T cd02954 13 EEKVVVIRFGRDWDPV-CMQMDEVLAKIAEDVSNF----AVIYLVDIDE----------------------------VPD 59 (114)
T ss_pred CCCEEEEEEECCCChh-HHHHHHHHHHHHHHccCc----eEEEEEECCC----------------------------CHH
Confidence 4689999999999999 999999999999998643 6667677653 245
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCCh
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDV 305 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~ 305 (321)
++..|+|..+| ++++-++|+.+.+..|..+.
T Consensus 60 la~~~~V~~iP---------------Tf~~fk~G~~v~~~~G~~~~ 90 (114)
T cd02954 60 FNKMYELYDPP---------------TVMFFFRNKHMKIDLGTGNN 90 (114)
T ss_pred HHHHcCCCCCC---------------EEEEEECCEEEEEEcCCCCC
Confidence 78899999999 46777899999997665544
No 76
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.14 E-value=5.2e-10 Score=94.02 Aligned_cols=93 Identities=16% Similarity=0.186 Sum_probs=71.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+++|||.||++||++ |....|.|.++.+++++. +.++-|++|.. .+
T Consensus 22 ~~~lVVvdF~A~WCgp-Ck~m~p~l~~la~~~~~~----~~~~kVDVDe~----------------------------~d 68 (142)
T PLN00410 22 EERLVVIRFGHDWDET-CMQMDEVLASVAETIKNF----AVIYLVDITEV----------------------------PD 68 (142)
T ss_pred CCCEEEEEEECCCChh-HHHHHHHHHHHHHHcCCc----eEEEEEECCCC----------------------------HH
Confidence 5789999999999998 999999999999998643 66677776632 45
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCe-EEEEeCC--------CCChhHHHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKME-FVKFFGK--------NNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~-Iv~~~~~--------~~~~~~l~~~l~~~L~~~ 319 (321)
+++.|+|...|+ ++++-++|+ .+++..| ..+.+++.+.++..++.-
T Consensus 69 la~~y~I~~~~t--------------~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a 123 (142)
T PLN00410 69 FNTMYELYDPCT--------------VMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGA 123 (142)
T ss_pred HHHHcCccCCCc--------------EEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHH
Confidence 688889886665 666778888 6777766 356667777777766544
No 77
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.11 E-value=4.3e-10 Score=88.40 Aligned_cols=86 Identities=21% Similarity=0.276 Sum_probs=62.9
Q ss_pred cCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHH
Q 020776 179 FLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIR 258 (321)
Q Consensus 179 ~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~ 258 (321)
.+|+ +||+||++||++ |....|.+.++.+.++. .++.+..|++|.+ .
T Consensus 15 ~~~~-~lv~f~a~wC~~-C~~~~p~~~~l~~~~~~---~~v~~~~vd~~~~----------------------------~ 61 (101)
T cd02994 15 LEGE-WMIEFYAPWCPA-CQQLQPEWEEFADWSDD---LGINVAKVDVTQE----------------------------P 61 (101)
T ss_pred hCCC-EEEEEECCCCHH-HHHHhHHHHHHHHhhcc---CCeEEEEEEccCC----------------------------H
Confidence 3566 579999999998 99999999999987653 2566666654421 2
Q ss_pred HHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHH
Q 020776 259 NIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGII 313 (321)
Q Consensus 259 ~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~ 313 (321)
.+++.|+|...|+ +++ .++|++ ..+.|..+.+++.+.|.
T Consensus 62 ~~~~~~~i~~~Pt--------------~~~-~~~g~~-~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 62 GLSGRFFVTALPT--------------IYH-AKDGVF-RRYQGPRDKEDLISFIE 100 (101)
T ss_pred hHHHHcCCcccCE--------------EEE-eCCCCE-EEecCCCCHHHHHHHHh
Confidence 3577899999886 555 488986 56778777776665543
No 78
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.11 E-value=6.1e-10 Score=88.33 Aligned_cols=89 Identities=11% Similarity=0.094 Sum_probs=64.9
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
++++++|+||++||++ |+.+.|.+++++++++++ +..+.+..++++. ...
T Consensus 14 ~~~~vlv~f~a~wC~~-C~~~~p~l~~l~~~~~~~-~~~~~~~~vd~~~----------------------------~~~ 63 (104)
T cd03000 14 KEDIWLVDFYAPWCGH-CKKLEPVWNEVGAELKSS-GSPVRVGKLDATA----------------------------YSS 63 (104)
T ss_pred cCCeEEEEEECCCCHH-HHhhChHHHHHHHHHHhc-CCcEEEEEEECcc----------------------------CHh
Confidence 4679999999999998 999999999999999754 3456655555431 124
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
+++.|+|...|+ +++++ +|. ...+.|..+.+.+.+.+++
T Consensus 64 ~~~~~~I~~~Pt--------------~~l~~-~~~-~~~~~G~~~~~~l~~~~~~ 102 (104)
T cd03000 64 IASEFGVRGYPT--------------IKLLK-GDL-AYNYRGPRTKDDIVEFANR 102 (104)
T ss_pred HHhhcCCccccE--------------EEEEc-CCC-ceeecCCCCHHHHHHHHHh
Confidence 577899998887 77774 454 4556677777766665544
No 79
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.07 E-value=3.2e-10 Score=89.03 Aligned_cols=87 Identities=17% Similarity=0.251 Sum_probs=65.8
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
++++++|+||++||++ |+...|.++++.+++++. ..+.++.|.++.+ ....
T Consensus 16 ~~~~~~v~f~a~wC~~-C~~~~~~~~~~~~~~~~~--~~~~~~~id~~~~--------------------------~~~~ 66 (104)
T cd02997 16 KEKHVLVMFYAPWCGH-CKKMKPEFTKAATELKED--GKGVLAAVDCTKP--------------------------EHDA 66 (104)
T ss_pred hCCCEEEEEECCCCHH-HHHhCHHHHHHHHHHhhC--CceEEEEEECCCC--------------------------ccHH
Confidence 4779999999999998 999999999999999753 2355555554421 1234
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
+.+.|++...|+ +++.++|+++..+.|..+.+.+.+
T Consensus 67 ~~~~~~i~~~Pt---------------~~~~~~g~~~~~~~g~~~~~~l~~ 102 (104)
T cd02997 67 LKEEYNVKGFPT---------------FKYFENGKFVEKYEGERTAEDIIE 102 (104)
T ss_pred HHHhCCCccccE---------------EEEEeCCCeeEEeCCCCCHHHHHh
Confidence 678899988884 566678998888888888776654
No 80
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.07 E-value=5.2e-10 Score=87.63 Aligned_cols=84 Identities=17% Similarity=0.233 Sum_probs=63.7
Q ss_pred CeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHH
Q 020776 182 KWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIA 261 (321)
Q Consensus 182 K~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a 261 (321)
+++||+||++||++ |+...|.++++++++++. ...+.++.|+.|.+ ..++
T Consensus 17 ~~~lv~f~a~wC~~-C~~~~p~~~~~~~~~~~~-~~~~~~~~vd~~~~----------------------------~~~~ 66 (102)
T cd03005 17 GNHFVKFFAPWCGH-CKRLAPTWEQLAKKFNNE-NPSVKIAKVDCTQH----------------------------RELC 66 (102)
T ss_pred CCEEEEEECCCCHH-HHHhCHHHHHHHHHHhcc-CCcEEEEEEECCCC----------------------------hhhH
Confidence 35999999999998 999999999999999752 12466666665421 2456
Q ss_pred HHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 262 RAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 262 ~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
+.|++...|+ ++++ ++|+.+..+.|..+.+++.+
T Consensus 67 ~~~~v~~~Pt--------------~~~~-~~g~~~~~~~G~~~~~~l~~ 100 (102)
T cd03005 67 SEFQVRGYPT--------------LLLF-KDGEKVDKYKGTRDLDSLKE 100 (102)
T ss_pred hhcCCCcCCE--------------EEEE-eCCCeeeEeeCCCCHHHHHh
Confidence 7889888886 6667 68888888888887666544
No 81
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.4e-09 Score=92.92 Aligned_cols=159 Identities=16% Similarity=0.241 Sum_probs=115.9
Q ss_pred CCCCCCCCCCCCCeEEEcCCCCeeeccccCC-CeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC
Q 020776 151 QGPSVGKAAIGGPFKLINHDGKNVTEKDFLG-KWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPE 229 (321)
Q Consensus 151 ~~~~vG~~aP~p~f~l~d~~G~~vsLsd~kG-K~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~ 229 (321)
+...+|+.+| +|+..+..| .+.+.||.| -|.+|+-......|+|..|+..+.++..+|.++ ++..|+.|+|.-
T Consensus 4 ~~l~lgd~~P--Nfea~Tt~g-~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KR---nvKlialS~d~v 77 (224)
T KOG0854|consen 4 PRLRLGDTVP--NFEADTTVG-KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKR---NVKLIALSVDDV 77 (224)
T ss_pred CcccccCcCC--Ccccccccc-ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhc---CceEEEeehhhH
Confidence 4567899999 999988888 588999876 588887777777779999999999999999887 688889998754
Q ss_pred CCC---HHHHHHHHHHhC--CCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCC
Q 020776 230 RDT---VEQVREYVKEFH--PKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNND 304 (321)
Q Consensus 230 ~Dt---~e~l~~~~~~~~--~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~ 304 (321)
++. .++++.|++... ++|+++ .|..++++-.|+..-...... .-.-...+++|+||++.+|+-.+....+
T Consensus 78 esH~~Wi~DIks~~~~~~~~~~yPII---aD~~rela~~l~MlD~~e~~~--~~~~~T~Ravfvi~pdkKirLs~lYP~t 152 (224)
T KOG0854|consen 78 ESHKDWIKDIKSYAKVKNHSVPYPII---ADPNRELAFLLNMLDPEEKKN--IGDGKTVRAVFVIDPDKKIRLSFLYPST 152 (224)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCee---cCCchhhhhhhcccCHhHcCC--CCCCceEEEEEEECCCceEEEEEEcccc
Confidence 332 234455555555 788888 788899998888653221111 1111345789999999999987666666
Q ss_pred hhHHHHHHHHHHHHHh
Q 020776 305 VNSLADGIIKEIKQYK 320 (321)
Q Consensus 305 ~~~l~~~l~~~L~~~k 320 (321)
.....++|.+.+..++
T Consensus 153 tGRN~dEiLRvidsLq 168 (224)
T KOG0854|consen 153 TGRNFDEILRVIDSLQ 168 (224)
T ss_pred cCcCHHHHHHHHHHHh
Confidence 6666666766666543
No 82
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.06 E-value=1.5e-09 Score=85.04 Aligned_cols=85 Identities=16% Similarity=0.187 Sum_probs=66.4
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|+++|+||++||+. |....+.|.++.+++.+ ++.++.|++|. ..+
T Consensus 12 ~~~~vlv~f~a~~C~~-C~~~~~~l~~l~~~~~~----~v~~~~id~d~----------------------------~~~ 58 (97)
T cd02949 12 SDRLILVLYTSPTCGP-CRTLKPILNKVIDEFDG----AVHFVEIDIDE----------------------------DQE 58 (97)
T ss_pred CCCeEEEEEECCCChh-HHHHHHHHHHHHHHhCC----ceEEEEEECCC----------------------------CHH
Confidence 5789999999999997 99999999999988863 36666666542 124
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
+++.|++...|+ ++++ ++|+++..+.+..+.+++.+.|
T Consensus 59 l~~~~~v~~vPt--------------~~i~-~~g~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 59 IAEAAGIMGTPT--------------VQFF-KDKELVKEISGVKMKSEYREFI 96 (97)
T ss_pred HHHHCCCeeccE--------------EEEE-ECCeEEEEEeCCccHHHHHHhh
Confidence 677889988887 7777 4899999888877776655544
No 83
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.05 E-value=5.5e-10 Score=87.14 Aligned_cols=89 Identities=15% Similarity=0.220 Sum_probs=68.6
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
++++++|+||++||++ |+...+.++++.+.++.+ + ++.++.+.+|. ...
T Consensus 12 ~~~~~~i~f~~~~C~~-c~~~~~~~~~~~~~~~~~-~-~~~~~~~d~~~----------------------------~~~ 60 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGH-CKNLAPEYEKLAKELKGD-P-DIVLAKVDATA----------------------------EKD 60 (102)
T ss_pred cCCcEEEEEECCCCHH-HHhhChHHHHHHHHhccC-C-ceEEEEEEccc----------------------------hHH
Confidence 6899999999999998 999999999999988654 1 46655555431 245
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
+.+.|++...|+ ++++++++. +..+.|..+.+++.+.|.+
T Consensus 61 ~~~~~~i~~~P~--------------~~~~~~~~~-~~~~~g~~~~~~l~~~i~~ 100 (102)
T TIGR01126 61 LASRFGVSGFPT--------------IKFFPKGKK-PVDYEGGRDLEAIVEFVNE 100 (102)
T ss_pred HHHhCCCCcCCE--------------EEEecCCCc-ceeecCCCCHHHHHHHHHh
Confidence 678899988887 889998887 5667777787777666655
No 84
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.05 E-value=8.3e-10 Score=87.22 Aligned_cols=84 Identities=12% Similarity=0.150 Sum_probs=64.6
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+++++|.||++||++ |+...|.++++.+++.. .+.+..|++|. ...
T Consensus 18 ~~~~v~v~f~a~wC~~-C~~~~p~~~~~~~~~~~----~~~~~~vd~~~----------------------------~~~ 64 (104)
T cd03004 18 RKEPWLVDFYAPWCGP-CQALLPELRKAARALKG----KVKVGSVDCQK----------------------------YES 64 (104)
T ss_pred CCCeEEEEEECCCCHH-HHHHHHHHHHHHHHhcC----CcEEEEEECCc----------------------------hHH
Confidence 4679999999999998 99999999999999853 36666666542 235
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCC-hhHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNND-VNSLAD 310 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~-~~~l~~ 310 (321)
+++.|+|...|+ +++++++|+.+..+.|..+ .+++.+
T Consensus 65 ~~~~~~i~~~Pt--------------~~~~~~g~~~~~~~~G~~~~~~~l~~ 102 (104)
T cd03004 65 LCQQANIRAYPT--------------IRLYPGNASKYHSYNGWHRDADSILE 102 (104)
T ss_pred HHHHcCCCcccE--------------EEEEcCCCCCceEccCCCCCHHHHHh
Confidence 678899999887 7777766588888877765 665544
No 85
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.04 E-value=6.4e-10 Score=88.38 Aligned_cols=88 Identities=16% Similarity=0.245 Sum_probs=66.9
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.|+++||+||++||++ |....|.+.++.+++.. .+.++.|++|.+ ....
T Consensus 17 ~~~~~lv~f~a~wC~~-C~~~~~~~~~~a~~~~~----~~~~~~v~~~~~--------------------------~~~~ 65 (109)
T cd03002 17 TNYTTLVEFYAPWCGH-CKNLKPEYAKAAKELDG----LVQVAAVDCDED--------------------------KNKP 65 (109)
T ss_pred CCCeEEEEEECCCCHH-HHhhChHHHHHHHHhcC----CceEEEEecCcc--------------------------ccHH
Confidence 4789999999999998 99999999999998863 366777776531 1245
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCC----eEEEEeCCCCChhHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKM----EFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG----~Iv~~~~~~~~~~~l~~~l 312 (321)
+.+.|++...|+ ++++++++ .+...|.|..+.+.+.+.|
T Consensus 66 ~~~~~~i~~~Pt--------------~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 66 LCGKYGVQGFPT--------------LKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred HHHHcCCCcCCE--------------EEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 677899998887 88888887 3455677777777665543
No 86
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.5e-09 Score=86.96 Aligned_cols=75 Identities=25% Similarity=0.293 Sum_probs=61.5
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|.++|+|+++||+| |+...|.+.++..+|. ++.++-|++|. ...
T Consensus 20 ~~kliVvdF~a~wCgP-Ck~i~P~~~~La~~y~-----~v~Flkvdvde----------------------------~~~ 65 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGP-CKAIAPKFEKLAEKYP-----DVVFLKVDVDE----------------------------LEE 65 (106)
T ss_pred CCCeEEEEEECCCCcc-hhhhhhHHHHHHHHCC-----CCEEEEEeccc----------------------------CHh
Confidence 3699999999999999 9999999999999996 46677777652 256
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCC
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNN 303 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~ 303 (321)
+++.|+|..+|+ |++-++|+.+..+.|..
T Consensus 66 ~~~~~~V~~~PT---------------f~f~k~g~~~~~~vGa~ 94 (106)
T KOG0907|consen 66 VAKEFNVKAMPT---------------FVFYKGGEEVDEVVGAN 94 (106)
T ss_pred HHHhcCceEeeE---------------EEEEECCEEEEEEecCC
Confidence 788999999995 55559999998875543
No 87
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.00 E-value=2.9e-09 Score=82.64 Aligned_cols=87 Identities=18% Similarity=0.141 Sum_probs=67.1
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
+++++|+||++||++ |....+.++++.+++.+ ++.++.|..|.. ..+
T Consensus 14 ~~~vvi~f~~~~C~~-C~~~~~~l~~~~~~~~~----~~~~~~vd~~~~----------------------------~~~ 60 (101)
T TIGR01068 14 DKPVLVDFWAPWCGP-CKMIAPILEELAKEYEG----KVKFVKLNVDEN----------------------------PDI 60 (101)
T ss_pred CCcEEEEEECCCCHH-HHHhCHHHHHHHHHhcC----CeEEEEEECCCC----------------------------HHH
Confidence 579999999999998 99999999999988853 377776665421 245
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
.++|++...|+ ++++ ++|+++..+.|..+.+++.+.|.+.
T Consensus 61 ~~~~~v~~~P~--------------~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 61 AAKYGIRSIPT--------------LLLF-KNGKEVDRSVGALPKAALKQLINKN 100 (101)
T ss_pred HHHcCCCcCCE--------------EEEE-eCCcEeeeecCCCCHHHHHHHHHhh
Confidence 67889988886 6666 6888888877777777776666553
No 88
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.00 E-value=1.7e-09 Score=86.26 Aligned_cols=87 Identities=21% Similarity=0.203 Sum_probs=64.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcC--CcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSG--IDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEI 257 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g--~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~ 257 (321)
.++++||+||++||++ |+...|.++++.++++++.. .++.+..|++|. .
T Consensus 17 ~~~~vlv~F~a~wC~~-C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~----------------------------~ 67 (108)
T cd02996 17 SAELVLVNFYADWCRF-SQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDK----------------------------E 67 (108)
T ss_pred cCCEEEEEEECCCCHH-HHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCC----------------------------C
Confidence 3689999999999998 99999999999998865311 136666566542 1
Q ss_pred HHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeE-EEEeCCCCChhHHHH
Q 020776 258 RNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEF-VKFFGKNNDVNSLAD 310 (321)
Q Consensus 258 ~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~I-v~~~~~~~~~~~l~~ 310 (321)
..++++|+|...|+ ++++ ++|++ ...+.|..+.+.+.+
T Consensus 68 ~~l~~~~~v~~~Pt--------------l~~~-~~g~~~~~~~~g~~~~~~l~~ 106 (108)
T cd02996 68 SDIADRYRINKYPT--------------LKLF-RNGMMMKREYRGQRSVEALAE 106 (108)
T ss_pred HHHHHhCCCCcCCE--------------EEEE-eCCcCcceecCCCCCHHHHHh
Confidence 35688899999886 5555 78884 466777777776654
No 89
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=98.99 E-value=2.5e-09 Score=86.69 Aligned_cols=83 Identities=6% Similarity=0.041 Sum_probs=64.4
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.++++||.||++||++ |+...|.+.++.+++++ .+.++.|++|.+ ..
T Consensus 28 ~~~~vlV~FyA~WC~~-Ck~l~p~~~~la~~~~~----~v~~~~Vd~d~~----------------------------~~ 74 (113)
T cd03006 28 DAEVSLVMYYAPWDAQ-SQAARQEFEQVAQKLSD----QVLFVAINCWWP----------------------------QG 74 (113)
T ss_pred CCCEEEEEEECCCCHH-HHHHHHHHHHHHHHhcC----CeEEEEEECCCC----------------------------hH
Confidence 4689999999999998 99999999999999964 366677776532 23
Q ss_pred HH-HHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 260 IA-RAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 260 ~a-~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
++ +.|+|...|+ +.++ ++|+....|.|..+.+.+..
T Consensus 75 l~~~~~~I~~~PT--------------l~lf-~~g~~~~~y~G~~~~~~i~~ 111 (113)
T cd03006 75 KCRKQKHFFYFPV--------------IHLY-YRSRGPIEYKGPMRAPYMEK 111 (113)
T ss_pred HHHHhcCCcccCE--------------EEEE-ECCccceEEeCCCCHHHHHh
Confidence 45 5799998886 4444 78888777878888776654
No 90
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.97 E-value=3.2e-09 Score=96.03 Aligned_cols=92 Identities=15% Similarity=0.197 Sum_probs=72.5
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+++++|+||++||++ |+...|.++++.+++++ .+.+..|++|. ...
T Consensus 51 ~~~~vlV~FyApWC~~-Ck~~~P~~e~la~~~~~----~v~~~~VD~~~----------------------------~~~ 97 (224)
T PTZ00443 51 TTGPWFVKFYAPWCSH-CRKMAPAWERLAKALKG----QVNVADLDATR----------------------------ALN 97 (224)
T ss_pred CCCCEEEEEECCCChH-HHHHHHHHHHHHHHcCC----CeEEEEecCcc----------------------------cHH
Confidence 3589999999999998 99999999999999863 35554444321 134
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~~ 319 (321)
+++.|+|...|+ +++++ +|+++.++.+..+.+++.+.+.+.+++.
T Consensus 98 l~~~~~I~~~PT--------------l~~f~-~G~~v~~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 98 LAKRFAIKGYPT--------------LLLFD-KGKMYQYEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred HHHHcCCCcCCE--------------EEEEE-CCEEEEeeCCCCCHHHHHHHHHHHHHhh
Confidence 678899999887 77776 8999888888889999988888877654
No 91
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.96 E-value=4.6e-09 Score=89.57 Aligned_cols=45 Identities=18% Similarity=0.126 Sum_probs=38.7
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
+++++||+||++||++ |....|.++++.+++.+. ++.++.|++|.
T Consensus 46 ~~~~vvV~Fya~wC~~-Ck~l~p~l~~la~~~~~~---~v~f~~VDvd~ 90 (152)
T cd02962 46 KRVTWLVEFFTTWSPE-CVNFAPVFAELSLKYNNN---NLKFGKIDIGR 90 (152)
T ss_pred CCCEEEEEEECCCCHH-HHHHHHHHHHHHHHcccC---CeEEEEEECCC
Confidence 4689999999999998 999999999999998643 58888888763
No 92
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.94 E-value=3.1e-09 Score=85.17 Aligned_cols=86 Identities=17% Similarity=0.238 Sum_probs=64.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.||++||.||++||++ |+...|.+.++.+++++. ++.++.|.+|.+ ...
T Consensus 20 ~~k~vlv~f~a~wC~~-C~~~~~~~~~la~~~~~~---~~~~~~vd~d~~---------------------------~~~ 68 (109)
T cd02993 20 RNQSTLVVLYAPWCPF-CQAMEASYEELAEKLAGS---NVKVAKFNADGE---------------------------QRE 68 (109)
T ss_pred cCCCEEEEEECCCCHH-HHHHhHHHHHHHHHhccC---CeEEEEEECCcc---------------------------chh
Confidence 5799999999999998 999999999999999743 577777776631 012
Q ss_pred HHH-HcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC-CChhHHHH
Q 020776 260 IAR-AYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN-NDVNSLAD 310 (321)
Q Consensus 260 ~a~-~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~-~~~~~l~~ 310 (321)
+++ .|++...|+ ++++++++.....|.+. .+.+.+..
T Consensus 69 ~~~~~~~v~~~Pt--------------i~~f~~~~~~~~~y~g~~~~~~~l~~ 107 (109)
T cd02993 69 FAKEELQLKSFPT--------------ILFFPKNSRQPIKYPSEQRDVDSLLM 107 (109)
T ss_pred hHHhhcCCCcCCE--------------EEEEcCCCCCceeccCCCCCHHHHHh
Confidence 333 478888887 88888887777777664 56665543
No 93
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.92 E-value=1.5e-09 Score=88.49 Aligned_cols=97 Identities=10% Similarity=0.142 Sum_probs=61.7
Q ss_pred eccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCCh
Q 020776 175 TEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSP 254 (321)
Q Consensus 175 sLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~ 254 (321)
..+..++|+|||+||++||++ |..+.|.+.+.......+ .++ +.|.+|.+.+.
T Consensus 13 ~~A~~~~kpVlV~F~a~WC~~-C~~~~~~~~~~~~~~~~~--~~f--v~v~vd~~~~~---------------------- 65 (117)
T cd02959 13 KEAKDSGKPLMLLIHKTWCGA-CKALKPKFAESKEISELS--HNF--VMVNLEDDEEP---------------------- 65 (117)
T ss_pred HHHHHcCCcEEEEEeCCcCHH-HHHHHHHHhhhHHHHhhc--CcE--EEEEecCCCCc----------------------
Confidence 344557899999999999998 999999999976655422 234 44565532110
Q ss_pred HHHHHHHHHcCceE--eecCCCCCCcccccceEEEEEcCCCeEEEE---eCCCCChhHHHHHHHHHHH
Q 020776 255 DEIRNIARAYRVYY--MKTAEEDSDYLVDHSIVMYLMSPKMEFVKF---FGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 255 d~~~~~a~~ygv~~--~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~---~~~~~~~~~l~~~l~~~L~ 317 (321)
....|++.+ .|+ ++++|++|+++.+ ..+..+.+...+.|.....
T Consensus 66 -----~~~~~~~~g~~vPt--------------~~f~~~~Gk~~~~~~~~~~~~~~~~f~~~~~~~~~ 114 (117)
T cd02959 66 -----KDEEFSPDGGYIPR--------------ILFLDPSGDVHPEIINKKGNPNYKYFYSSAAQVTE 114 (117)
T ss_pred -----hhhhcccCCCccce--------------EEEECCCCCCchhhccCCCCccccccCCCHHHHHh
Confidence 012344432 565 9999999999874 3344444444444444443
No 94
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=4.3e-09 Score=97.30 Aligned_cols=89 Identities=18% Similarity=0.147 Sum_probs=74.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
+-+||||+||++||++ |..-+|.|.++..+|+.+ +.+.-|++|.+ ..
T Consensus 42 ~~~PVlV~fWap~~~~-c~qL~p~Lekla~~~~G~----f~LakvN~D~~----------------------------p~ 88 (304)
T COG3118 42 REVPVLVDFWAPWCGP-CKQLTPTLEKLAAEYKGK----FKLAKVNCDAE----------------------------PM 88 (304)
T ss_pred cCCCeEEEecCCCCch-HHHHHHHHHHHHHHhCCc----eEEEEecCCcc----------------------------hh
Confidence 5679999999999998 999999999999999754 77777777643 45
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
++.+|||..+|+ +| .-++|+-+.-|.|....+.+.+.|.+.+
T Consensus 89 vAaqfgiqsIPt--------------V~-af~dGqpVdgF~G~qPesqlr~~ld~~~ 130 (304)
T COG3118 89 VAAQFGVQSIPT--------------VY-AFKDGQPVDGFQGAQPESQLRQFLDKVL 130 (304)
T ss_pred HHHHhCcCcCCe--------------EE-EeeCCcCccccCCCCcHHHHHHHHHHhc
Confidence 688999999996 44 4589999999988888888888777665
No 95
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.90 E-value=8.7e-09 Score=80.34 Aligned_cols=87 Identities=23% Similarity=0.293 Sum_probs=70.1
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.++++||+||+.||++ |....|.+.++.+++.+ ++.++.|+.+. ...
T Consensus 16 ~~~~vvv~f~~~~C~~-C~~~~~~~~~~~~~~~~----~v~~~~vd~~~----------------------------~~~ 62 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPP-CKAFKPILEKLAKEYKD----NVKFAKVDCDE----------------------------NKE 62 (103)
T ss_dssp TSSEEEEEEESTTSHH-HHHHHHHHHHHHHHTTT----TSEEEEEETTT----------------------------SHH
T ss_pred cCCCEEEEEeCCCCCc-cccccceeccccccccc----ccccchhhhhc----------------------------cch
Confidence 3799999999999998 99999999999999975 46666666442 145
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
+++.|++...|+ +++-++|+....+.+..+.+.+.+.|++
T Consensus 63 l~~~~~v~~~Pt---------------~~~~~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 63 LCKKYGVKSVPT---------------IIFFKNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp HHHHTTCSSSSE---------------EEEEETTEEEEEEESSSSHHHHHHHHHH
T ss_pred hhhccCCCCCCE---------------EEEEECCcEEEEEECCCCHHHHHHHHHc
Confidence 688899998885 4555788888888888898888887765
No 96
>PTZ00051 thioredoxin; Provisional
Probab=98.89 E-value=9.2e-09 Score=80.17 Aligned_cols=79 Identities=14% Similarity=0.172 Sum_probs=59.8
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+++++|+||++||++ |+...+.+.++.+++. ++.++.|+.|. ...
T Consensus 17 ~~~~vli~f~~~~C~~-C~~~~~~l~~l~~~~~-----~~~~~~vd~~~----------------------------~~~ 62 (98)
T PTZ00051 17 QNELVIVDFYAEWCGP-CKRIAPFYEECSKEYT-----KMVFVKVDVDE----------------------------LSE 62 (98)
T ss_pred cCCeEEEEEECCCCHH-HHHHhHHHHHHHHHcC-----CcEEEEEECcc----------------------------hHH
Confidence 4789999999999998 9999999999988653 35555555431 135
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSL 308 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l 308 (321)
++++|++...|+ +++.++|+++..+.|. ..+++
T Consensus 63 ~~~~~~v~~~Pt---------------~~~~~~g~~~~~~~G~-~~~~~ 95 (98)
T PTZ00051 63 VAEKENITSMPT---------------FKVFKNGSVVDTLLGA-NDEAL 95 (98)
T ss_pred HHHHCCCceeeE---------------EEEEeCCeEEEEEeCC-CHHHh
Confidence 688899999885 5666899999988664 44433
No 97
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.88 E-value=1e-08 Score=82.66 Aligned_cols=82 Identities=15% Similarity=0.153 Sum_probs=67.5
Q ss_pred CCCeEEEEEecCC--CCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHH
Q 020776 180 LGKWTVIYFGFTH--CPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEI 257 (321)
Q Consensus 180 kGK~vLL~Fwatw--Cp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~ 257 (321)
.|.+++|.||++| ||+ |....|.|.++.++|.++ +.++-|++|.+
T Consensus 26 ~~~~~v~~f~~~~~~cp~-c~~i~P~leela~e~~~~----v~f~kVdid~~---------------------------- 72 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPE-VLDVAVVLPELLKAFPGR----FRAAVVGRADE---------------------------- 72 (111)
T ss_pred CCCCEEEEecCCcccCcc-hhhhHhHHHHHHHHCCCc----EEEEEEECCCC----------------------------
Confidence 5789999999997 998 999999999999999643 66666665421
Q ss_pred HHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHH
Q 020776 258 RNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLA 309 (321)
Q Consensus 258 ~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~ 309 (321)
.+++..|+|..+|+ +++-++|+++....|..+.+++.
T Consensus 73 ~~la~~f~V~sIPT---------------li~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 73 QALAARFGVLRTPA---------------LLFFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred HHHHHHcCCCcCCE---------------EEEEECCEEEEEEeCccCHHHHh
Confidence 36789999999994 67778999999988888877664
No 98
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.86 E-value=1.3e-08 Score=79.13 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=60.5
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
+++++|+||++||++ |+...+.|.++.+++. .++.++.|+.+. ..++
T Consensus 14 ~~~v~v~f~~~~C~~-C~~~~~~l~~l~~~~~----~~i~~~~vd~~~----------------------------~~~~ 60 (97)
T cd02984 14 SKLLVLHFWAPWAEP-CKQMNQVFEELAKEAF----PSVLFLSIEAEE----------------------------LPEI 60 (97)
T ss_pred CCEEEEEEECCCCHH-HHHHhHHHHHHHHHhC----CceEEEEEcccc----------------------------CHHH
Confidence 799999999999998 9999999999998872 246666554321 1346
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHH
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADG 311 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~ 311 (321)
.+.|++...|+ ++++ ++|+++.++.|. +.+++.+.
T Consensus 61 ~~~~~i~~~Pt--------------~~~~-~~g~~~~~~~g~-~~~~l~~~ 95 (97)
T cd02984 61 SEKFEITAVPT--------------FVFF-RNGTIVDRVSGA-DPKELAKK 95 (97)
T ss_pred HHhcCCccccE--------------EEEE-ECCEEEEEEeCC-CHHHHHHh
Confidence 78899998886 5555 589999887663 44544443
No 99
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.86 E-value=1.5e-08 Score=83.01 Aligned_cols=90 Identities=8% Similarity=0.105 Sum_probs=69.2
Q ss_pred CCeEEEEEecCCCCC-CcH--HHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHH
Q 020776 181 GKWTVIYFGFTHCPD-ICP--DELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEI 257 (321)
Q Consensus 181 GK~vLL~FwatwCp~-vC~--~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~ 257 (321)
..++|++||++||++ -|+ ...|.|.++..++-+. .++.++-|++|.+
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~--~~v~~~kVD~d~~---------------------------- 76 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLED--KGIGFGLVDSKKD---------------------------- 76 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhc--CCCEEEEEeCCCC----------------------------
Confidence 468999999999963 499 7788899998888322 1477777776532
Q ss_pred HHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 258 RNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 258 ~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
.+++++|||..+|+ +++-++|+++. +.|..+.+.+.+.|.+++
T Consensus 77 ~~La~~~~I~~iPT---------------l~lfk~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 77 AKVAKKLGLDEEDS---------------IYVFKDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred HHHHHHcCCccccE---------------EEEEECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 56789999999995 44557999887 778888888888887765
No 100
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.83 E-value=1e-08 Score=80.29 Aligned_cols=86 Identities=16% Similarity=0.214 Sum_probs=65.4
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
+++++|.||++||++ |+...+.+.++.++++.. .++.++.|+.+.+ ...+
T Consensus 18 ~~~~~v~f~a~~C~~-C~~~~~~~~~~~~~~~~~--~~~~~~~id~~~~---------------------------~~~~ 67 (105)
T cd02998 18 KKDVLVEFYAPWCGH-CKNLAPEYEKLAAVFANE--DDVVIAKVDADEA---------------------------NKDL 67 (105)
T ss_pred CCcEEEEEECCCCHH-HHhhChHHHHHHHHhCCC--CCEEEEEEECCCc---------------------------chhh
Confidence 579999999999998 999999999999998632 2466666654421 1355
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
.+.|++...|+ +++++++|+....+.+..+.+++.+
T Consensus 68 ~~~~~i~~~P~--------------~~~~~~~~~~~~~~~g~~~~~~l~~ 103 (105)
T cd02998 68 AKKYGVSGFPT--------------LKFFPKGSTEPVKYEGGRDLEDLVK 103 (105)
T ss_pred HHhCCCCCcCE--------------EEEEeCCCCCccccCCccCHHHHHh
Confidence 77888888887 8888888777777777777766654
No 101
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.83 E-value=1.2e-08 Score=104.40 Aligned_cols=94 Identities=14% Similarity=0.118 Sum_probs=68.4
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHHH---HHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCC
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQKL---AAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGS 253 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~L---~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~ 253 (321)
+..+||+|+|+||++||++ |+.+-+.. .++.++++ ++.++-|++|.+
T Consensus 470 a~~~gK~VlVdF~A~WC~~-Ck~~e~~~~~~~~v~~~l~-----~~~~v~vDvt~~------------------------ 519 (571)
T PRK00293 470 AKGKGKPVMLDLYADWCVA-CKEFEKYTFSDPQVQQALA-----DTVLLQADVTAN------------------------ 519 (571)
T ss_pred HHhcCCcEEEEEECCcCHh-HHHHHHHhcCCHHHHHHhc-----CCEEEEEECCCC------------------------
Confidence 3456899999999999998 99876654 55666653 355555665421
Q ss_pred hHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEE--EEeCCCCChhHHHHHHHH
Q 020776 254 PDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFV--KFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 254 ~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv--~~~~~~~~~~~l~~~l~~ 314 (321)
.++..++.++|++...|+ ++++|++|+++ .++.|..+.+++.+.+++
T Consensus 520 ~~~~~~l~~~~~v~g~Pt--------------~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~ 568 (571)
T PRK00293 520 NAEDVALLKHYNVLGLPT--------------ILFFDAQGQEIPDARVTGFMDAAAFAAHLRQ 568 (571)
T ss_pred ChhhHHHHHHcCCCCCCE--------------EEEECCCCCCcccccccCCCCHHHHHHHHHH
Confidence 123356788899999887 89999999985 567787887777666655
No 102
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.79 E-value=3e-08 Score=77.69 Aligned_cols=84 Identities=12% Similarity=0.175 Sum_probs=62.5
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
+++++|+||++||++ |+...|.+.++.+++.. .+.+..+++|. ...+
T Consensus 18 ~~~vlv~f~a~~C~~-C~~~~~~~~~~~~~~~~----~~~~~~id~~~----------------------------~~~~ 64 (103)
T cd03001 18 DDVWLVEFYAPWCGH-CKNLAPEWKKAAKALKG----IVKVGAVDADV----------------------------HQSL 64 (103)
T ss_pred CCcEEEEEECCCCHH-HHHHhHHHHHHHHHhcC----CceEEEEECcc----------------------------hHHH
Confidence 567999999999998 99999999999988863 36566565432 2346
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHH
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADG 311 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~ 311 (321)
.+.|++...|+ +++++++......+.+..+.+++.+.
T Consensus 65 ~~~~~i~~~P~--------------~~~~~~~~~~~~~~~g~~~~~~l~~~ 101 (103)
T cd03001 65 AQQYGVRGFPT--------------IKVFGAGKNSPQDYQGGRTAKAIVSA 101 (103)
T ss_pred HHHCCCCccCE--------------EEEECCCCcceeecCCCCCHHHHHHH
Confidence 78899988886 77776553555567777887766554
No 103
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.79 E-value=8.2e-09 Score=79.47 Aligned_cols=86 Identities=15% Similarity=0.167 Sum_probs=65.4
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
++++++|.||++||++ |....+.+.++.+.++.+ ..+.++.|+.|. ...
T Consensus 14 ~~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~----------------------------~~~ 62 (101)
T cd02961 14 DSKDVLVEFYAPWCGH-CKALAPEYEKLAKELKGD--GKVVVAKVDCTA----------------------------NND 62 (101)
T ss_pred CCCcEEEEEECCCCHH-HHhhhHHHHHHHHHhccC--CceEEEEeeccc----------------------------hHH
Confidence 4569999999999998 999999999999988511 246666555431 245
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
+.+.|++...|+ +++++++|..+..+.+..+.+++.+
T Consensus 63 ~~~~~~i~~~Pt--------------~~~~~~~~~~~~~~~g~~~~~~i~~ 99 (101)
T cd02961 63 LCSEYGVRGYPT--------------IKLFPNGSKEPVKYEGPRTLESLVE 99 (101)
T ss_pred HHHhCCCCCCCE--------------EEEEcCCCcccccCCCCcCHHHHHh
Confidence 678899988887 8999988777777777777666554
No 104
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.79 E-value=2.6e-08 Score=80.70 Aligned_cols=63 Identities=13% Similarity=0.102 Sum_probs=47.1
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
++++||+||++||++ |....|.++++.+++++. ...+.+..|+++. +....+
T Consensus 19 ~~~vvV~f~a~wC~~-C~~~~~~~~~la~~~~~~-~~~v~~~~vd~~~--------------------------~~~~~~ 70 (114)
T cd02992 19 PSAWLVEFYASWCGH-CRAFAPTWKKLARDLRKW-RPVVRVAAVDCAD--------------------------EENVAL 70 (114)
T ss_pred CCeEEEEEECCCCHH-HHHHhHHHHHHHHHHHhc-CCceEEEEEeccc--------------------------hhhHHH
Confidence 479999999999998 999999999999999754 1235555454331 223456
Q ss_pred HHHcCceEeec
Q 020776 261 ARAYRVYYMKT 271 (321)
Q Consensus 261 a~~ygv~~~p~ 271 (321)
.+.|++...|+
T Consensus 71 ~~~~~i~~~Pt 81 (114)
T cd02992 71 CRDFGVTGYPT 81 (114)
T ss_pred HHhCCCCCCCE
Confidence 78889988886
No 105
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.76 E-value=9.1e-08 Score=76.83 Aligned_cols=83 Identities=22% Similarity=0.320 Sum_probs=71.0
Q ss_pred CeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC----CCCCHHHHHH
Q 020776 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP----ERDTVEQVRE 238 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp----~~Dt~e~l~~ 238 (321)
+|++.|.+|+.++|++++||++||.-.|+.|+. -. +...|++++++|+++ .+.++++.++. |.++.+++++
T Consensus 3 df~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~-t~-qy~~L~~L~~ky~~~---gl~ILaFPcnqFg~QEp~~~~ei~~ 77 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGY-TK-QYKQLNELYEKYKDK---GLEILAFPCNQFGNQEPGSNEEIKE 77 (108)
T ss_dssp GSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTT-HH-HHHHHHHHHHHHGGG---TEEEEEEEBSTTTTTTSSCHHHHHH
T ss_pred ceeeeCCCCCEECHHHcCCCEEEEEecccccCC-cc-ccHHHHHHHHHHhcC---CeEEEeeehHHhccccCCCHHHHHH
Confidence 689999999999999999999999999999996 66 999999999999987 57788887653 3457788999
Q ss_pred HHHH-hCCCceee
Q 020776 239 YVKE-FHPKLIGL 250 (321)
Q Consensus 239 ~~~~-~~~~~~~l 250 (321)
|+.. ++++|++.
T Consensus 78 ~~~~~~~~~F~vf 90 (108)
T PF00255_consen 78 FCKEKFGVTFPVF 90 (108)
T ss_dssp HHCHCHT-SSEEB
T ss_pred HHHhccCCcccce
Confidence 8888 68888765
No 106
>PTZ00102 disulphide isomerase; Provisional
Probab=98.75 E-value=9e-08 Score=95.32 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=74.6
Q ss_pred EcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCC
Q 020776 167 INHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPK 246 (321)
Q Consensus 167 ~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~ 246 (321)
.+.+.+.+.-.--+++.+||.||++||++ |+...|.+.++...+++. +.++.+..|.++.
T Consensus 35 ~~l~~~~f~~~i~~~~~~lv~f~a~wC~~-Ck~~~p~~~~~a~~~~~~-~~~i~~~~vd~~~------------------ 94 (477)
T PTZ00102 35 TVLTDSTFDKFITENEIVLVKFYAPWCGH-CKRLAPEYKKAAKMLKEK-KSEIVLASVDATE------------------ 94 (477)
T ss_pred EEcchhhHHHHHhcCCcEEEEEECCCCHH-HHHhhHHHHHHHHHHHhc-CCcEEEEEEECCC------------------
Confidence 34444444322235789999999999998 999999999999888765 3456666555432
Q ss_pred ceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 247 LIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 247 ~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
...+.++|+|...|+ +++++..+.+ .|.|..+.+.+.+.+.+.+
T Consensus 95 ----------~~~l~~~~~i~~~Pt--------------~~~~~~g~~~--~y~g~~~~~~l~~~l~~~~ 138 (477)
T PTZ00102 95 ----------EMELAQEFGVRGYPT--------------IKFFNKGNPV--NYSGGRTADGIVSWIKKLT 138 (477)
T ss_pred ----------CHHHHHhcCCCcccE--------------EEEEECCceE--EecCCCCHHHHHHHHHHhh
Confidence 145688899999887 7777665544 6667888888888777764
No 107
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.74 E-value=2.8e-08 Score=80.18 Aligned_cols=71 Identities=14% Similarity=0.110 Sum_probs=55.9
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
+++++|+||++||++ |....|.++++.+++. ++.++-|++| .. .+
T Consensus 24 ~~~vvv~F~a~~c~~-C~~l~~~l~~la~~~~-----~v~f~~vd~~----------------------------~~-~l 68 (113)
T cd02957 24 GTRVVVHFYEPGFPR-CKILDSHLEELAAKYP-----ETKFVKINAE----------------------------KA-FL 68 (113)
T ss_pred CCEEEEEEeCCCCCc-HHHHHHHHHHHHHHCC-----CcEEEEEEch----------------------------hh-HH
Confidence 589999999999998 9999999999998884 3444544432 12 56
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
+++|+|...| ++++-++|+++..+.|
T Consensus 69 ~~~~~i~~~P---------------t~~~f~~G~~v~~~~G 94 (113)
T cd02957 69 VNYLDIKVLP---------------TLLVYKNGELIDNIVG 94 (113)
T ss_pred HHhcCCCcCC---------------EEEEEECCEEEEEEec
Confidence 8889999888 4677789999988755
No 108
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.72 E-value=1.2e-07 Score=76.75 Aligned_cols=87 Identities=14% Similarity=0.052 Sum_probs=61.2
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
+++.++|+||++||++ |+...|.|.++.+++ + .+.++.|++|. ..+
T Consensus 21 ~~~~vvv~f~a~wC~~-C~~~~~~l~~la~~~-~----~i~~~~vd~d~----------------------------~~~ 66 (113)
T cd02975 21 NPVDLVVFSSKEGCQY-CEVTKQLLEELSELS-D----KLKLEIYDFDE----------------------------DKE 66 (113)
T ss_pred CCeEEEEEeCCCCCCC-hHHHHHHHHHHHHhc-C----ceEEEEEeCCc----------------------------CHH
Confidence 3567889999999998 999999999998776 2 36666666552 135
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCC---CeEEEEeCCCCChhHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPK---MEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~d---G~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
++++|++...|+ +++.+.+ |.+ .+.|..+..++.+.|..++
T Consensus 67 l~~~~~v~~vPt--------------~~i~~~g~~~~~~--~~~G~~~~~el~~~i~~i~ 110 (113)
T cd02975 67 KAEKYGVERVPT--------------TIFLQDGGKDGGI--RYYGLPAGYEFASLIEDIV 110 (113)
T ss_pred HHHHcCCCcCCE--------------EEEEeCCeecceE--EEEecCchHHHHHHHHHHH
Confidence 678899999886 5555542 333 3446666667777666655
No 109
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=98.72 E-value=1.1e-07 Score=78.09 Aligned_cols=92 Identities=12% Similarity=0.190 Sum_probs=60.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC----CCHHHHHHHHHHhCCCceeecCChH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER----DTVEQVREYVKEFHPKLIGLTGSPD 255 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~----Dt~e~l~~~~~~~~~~~~~l~~~~d 255 (321)
.|+.++|+|+++|||+ |+...|.|.++.++. ++.+..|++|.+. .+.+++.+|.+.++..
T Consensus 22 ~~~~~iv~f~~~~Cp~-C~~~~P~l~~~~~~~------~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~--------- 85 (122)
T TIGR01295 22 KKETATFFIGRKTCPY-CRKFSGTLSGVVAQT------KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIP--------- 85 (122)
T ss_pred cCCcEEEEEECCCChh-HHHHhHHHHHHHHhc------CCcEEEEECCCccCcCcccHHHHHHHHHHcCCc---------
Confidence 4788999999999998 999999999998873 2445666776421 1112344444444311
Q ss_pred HHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC-CChhHHHH
Q 020776 256 EIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN-NDVNSLAD 310 (321)
Q Consensus 256 ~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~-~~~~~l~~ 310 (321)
+++.++| ++++=++|+.+.+..|. ...+++.+
T Consensus 86 --------~~i~~~P---------------T~v~~k~Gk~v~~~~G~~~~~~~l~~ 118 (122)
T TIGR01295 86 --------TSFMGTP---------------TFVHITDGKQVSVRCGSSTTAQELQD 118 (122)
T ss_pred --------ccCCCCC---------------EEEEEeCCeEEEEEeCCCCCHHHHHH
Confidence 2344566 46777899999887663 34444443
No 110
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.70 E-value=1e-07 Score=77.07 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=48.4
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+|+|||.|+++||++ |+..-|.|.++..+|++. +.++-|++| +..+
T Consensus 13 ~~klVVVdF~a~WC~p-Ck~mdp~l~ela~~~~~~----~~f~kVDVD----------------------------ev~d 59 (114)
T cd02986 13 AEKVLVLRFGRDEDAV-CLQLDDILSKTSHDLSKM----ASIYLVDVD----------------------------KVPV 59 (114)
T ss_pred CCCEEEEEEeCCCChh-HHHHHHHHHHHHHHccCc----eEEEEEecc----------------------------ccHH
Confidence 6899999999999998 999999999999999631 666666654 2355
Q ss_pred HHHHcCceEeec
Q 020776 260 IARAYRVYYMKT 271 (321)
Q Consensus 260 ~a~~ygv~~~p~ 271 (321)
+++.|+|...|+
T Consensus 60 va~~y~I~amPt 71 (114)
T cd02986 60 YTQYFDISYIPS 71 (114)
T ss_pred HHHhcCceeCcE
Confidence 788899988886
No 111
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.69 E-value=1.9e-07 Score=76.92 Aligned_cols=84 Identities=11% Similarity=0.079 Sum_probs=54.0
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHHH---HHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCC
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQKL---AAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGS 253 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~L---~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~ 253 (321)
+.-.+|+|||+|+++||++ |+..-+.. .++.+.+.+ ++++|-|++|. .++..+.+.+
T Consensus 11 Ak~~~KpVll~f~a~WC~~-Ck~me~~~f~~~~V~~~l~~----~fv~VkvD~~~---~~~~~~~~~~------------ 70 (124)
T cd02955 11 ARREDKPIFLSIGYSTCHW-CHVMEHESFEDEEVAAILNE----NFVPIKVDREE---RPDVDKIYMN------------ 70 (124)
T ss_pred HHHcCCeEEEEEccCCCHh-HHHHHHHccCCHHHHHHHhC----CEEEEEEeCCc---CcHHHHHHHH------------
Confidence 3446899999999999998 99776522 245554433 36555555432 2332222211
Q ss_pred hHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe
Q 020776 254 PDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF 299 (321)
Q Consensus 254 ~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~ 299 (321)
.....|++.+.|+ ++++|++|++++..
T Consensus 71 -----~~~~~~~~~G~Pt--------------~vfl~~~G~~~~~~ 97 (124)
T cd02955 71 -----AAQAMTGQGGWPL--------------NVFLTPDLKPFFGG 97 (124)
T ss_pred -----HHHHhcCCCCCCE--------------EEEECCCCCEEeee
Confidence 1123568888787 99999999999775
No 112
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.67 E-value=2.4e-07 Score=69.66 Aligned_cols=82 Identities=17% Similarity=0.161 Sum_probs=60.1
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
+++++|+||++||+. |....+.++++.++. . ++.++.|+.+. ..++
T Consensus 10 ~~~~ll~~~~~~C~~-C~~~~~~~~~~~~~~--~---~~~~~~i~~~~----------------------------~~~~ 55 (93)
T cd02947 10 AKPVVVDFWAPWCGP-CKAIAPVLEELAEEY--P---KVKFVKVDVDE----------------------------NPEL 55 (93)
T ss_pred CCcEEEEEECCCChh-HHHhhHHHHHHHHHC--C---CceEEEEECCC----------------------------ChhH
Confidence 389999999999998 999999999998772 2 46666666542 1345
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHH
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADG 311 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~ 311 (321)
.+.|++...|+ ++++ .+|+++..+.+..+.+.+.+.
T Consensus 56 ~~~~~v~~~P~--------------~~~~-~~g~~~~~~~g~~~~~~l~~~ 91 (93)
T cd02947 56 AEEYGVRSIPT--------------FLFF-KNGKEVDRVVGADPKEELEEF 91 (93)
T ss_pred HHhcCcccccE--------------EEEE-ECCEEEEEEecCCCHHHHHHH
Confidence 67788888885 4544 678888887776666555544
No 113
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.66 E-value=2.9e-07 Score=74.24 Aligned_cols=97 Identities=16% Similarity=0.246 Sum_probs=69.0
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHH-H--HHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCC
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQK-L--AAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGS 253 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~-L--~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~ 253 (321)
+.-++|+++|+|++.||++ |...... | .++.+.+.+ +.+.+ .+|..
T Consensus 13 Ak~~~K~llv~~~~~~c~~-c~~~~~~vl~~~~v~~~l~~----~~v~~--~~d~~------------------------ 61 (114)
T cd02958 13 AKSEKKWLLVYLQSEDEFD-SQVLNRDLWSNESVKEFIRE----NFIFW--QCDID------------------------ 61 (114)
T ss_pred HHhhCceEEEEEecCCcch-HHHHHHHHcCCHHHHHHHHh----CEEEE--EecCC------------------------
Confidence 3346899999999999998 9876543 2 223444432 24433 33321
Q ss_pred hHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcC-CCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 254 PDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSP-KMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 254 ~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~-dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
..+..+++..|++...|+ +++||+ +|+++....|..+++++...|.+.+..
T Consensus 62 ~~e~~~~~~~~~~~~~P~--------------~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~~ 113 (114)
T cd02958 62 SSEGQRFLQSYKVDKYPH--------------IAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLEE 113 (114)
T ss_pred CccHHHHHHHhCccCCCe--------------EEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHhc
Confidence 112345677788888887 999999 899999999999999999999887754
No 114
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.65 E-value=2.7e-07 Score=69.26 Aligned_cols=80 Identities=16% Similarity=0.308 Sum_probs=57.5
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHH
Q 020776 184 TVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARA 263 (321)
Q Consensus 184 vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ 263 (321)
.+..||++||++ |....+.|+++.++++. .+.++.|++|.+ .+.++.
T Consensus 2 ~v~~f~~~~C~~-C~~~~~~l~~l~~~~~~----~~~~~~vd~~~~----------------------------~~~~~~ 48 (82)
T TIGR00411 2 KIELFTSPTCPY-CPAAKRVVEEVAKEMGD----AVEVEYINVMEN----------------------------PQKAME 48 (82)
T ss_pred EEEEEECCCCcc-hHHHHHHHHHHHHHhcC----ceEEEEEeCccC----------------------------HHHHHH
Confidence 467899999998 99999999999988853 366666665421 234567
Q ss_pred cCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 264 YRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 264 ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
|++..+|+ +++ +|++ .+.|..+.+++.+.|.++
T Consensus 49 ~~v~~vPt---------------~~~--~g~~--~~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 49 YGIMAVPA---------------IVI--NGDV--EFIGAPTKEELVEAIKKR 81 (82)
T ss_pred cCCccCCE---------------EEE--CCEE--EEecCCCHHHHHHHHHhh
Confidence 99998885 445 6664 444667777777766654
No 115
>PTZ00102 disulphide isomerase; Provisional
Probab=98.64 E-value=7e-08 Score=96.11 Aligned_cols=108 Identities=12% Similarity=0.059 Sum_probs=79.1
Q ss_pred EEEcCCCCeeecc-ccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHh
Q 020776 165 KLINHDGKNVTEK-DFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEF 243 (321)
Q Consensus 165 ~l~d~~G~~vsLs-d~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~ 243 (321)
.++...|+.+... .-.||+|||+||++||++ |+...|.++++.+.+++. ..+.+..|+.|.+
T Consensus 358 ~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~-C~~~~p~~~~~a~~~~~~--~~v~~~~id~~~~-------------- 420 (477)
T PTZ00102 358 PVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGH-CKNLEPVYNELGEKYKDN--DSIIVAKMNGTAN-------------- 420 (477)
T ss_pred CeEEecccchHHHHhcCCCCEEEEEECCCCHH-HHHHHHHHHHHHHHhccC--CcEEEEEEECCCC--------------
Confidence 3455566666533 235899999999999998 999999999999988753 2465665665432
Q ss_pred CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 244 HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 244 ~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
...++.|++...|+ ++++++++++...+.|..+.+.+.+.|.+...
T Consensus 421 --------------~~~~~~~~v~~~Pt--------------~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 421 --------------ETPLEEFSWSAFPT--------------ILFVKAGERTPIPYEGERTVEGFKEFVNKHAT 466 (477)
T ss_pred --------------ccchhcCCCcccCe--------------EEEEECCCcceeEecCcCCHHHHHHHHHHcCC
Confidence 11255678888887 88999888876677788888888887776553
No 116
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.64 E-value=1.5e-07 Score=76.19 Aligned_cols=73 Identities=8% Similarity=-0.023 Sum_probs=57.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+++|+|+||++||++ |+...|.|.++.+++. ++.++-|++|. ...
T Consensus 21 ~~~~vvV~f~a~~c~~-C~~~~p~l~~la~~~~-----~i~f~~Vd~~~----------------------------~~~ 66 (113)
T cd02989 21 SSERVVCHFYHPEFFR-CKIMDKHLEILAKKHL-----ETKFIKVNAEK----------------------------APF 66 (113)
T ss_pred CCCcEEEEEECCCCcc-HHHHHHHHHHHHHHcC-----CCEEEEEEccc----------------------------CHH
Confidence 4689999999999998 9999999999998874 35555555432 235
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
++++|+|...| ++++-++|+++.++.+
T Consensus 67 l~~~~~v~~vP---------------t~l~fk~G~~v~~~~g 93 (113)
T cd02989 67 LVEKLNIKVLP---------------TVILFKNGKTVDRIVG 93 (113)
T ss_pred HHHHCCCccCC---------------EEEEEECCEEEEEEEC
Confidence 78899999998 4677789999887544
No 117
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.63 E-value=1e-07 Score=74.54 Aligned_cols=44 Identities=18% Similarity=0.241 Sum_probs=36.0
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
+++++|+||++||++ |+...|.+.++.+.+++. .++.+..|+.|
T Consensus 18 ~~~~~v~f~~~~C~~-C~~~~~~~~~~~~~~~~~--~~~~~~~id~~ 61 (104)
T cd02995 18 DKDVLVEFYAPWCGH-CKALAPIYEELAEKLKGD--DNVVIAKMDAT 61 (104)
T ss_pred CCcEEEEEECCCCHH-HHHHhhHHHHHHHHhcCC--CCEEEEEEeCc
Confidence 689999999999998 999999999999998752 24666655543
No 118
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.62 E-value=5.9e-08 Score=79.35 Aligned_cols=79 Identities=20% Similarity=0.210 Sum_probs=58.3
Q ss_pred cCCCeEEEEEec-------CCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeec
Q 020776 179 FLGKWTVIYFGF-------THCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLT 251 (321)
Q Consensus 179 ~kGK~vLL~Fwa-------twCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~ 251 (321)
.+|++|+|+||| +||++ |+...|.|.++.+++++ ++.++-|.+|... .+
T Consensus 19 ~~~~~vvV~F~A~~~~~~~~WC~p-Cr~~~P~l~~l~~~~~~----~v~fv~Vdvd~~~------------------~w- 74 (119)
T cd02952 19 HEGKPIFILFYGDKDPDGQSWCPD-CVKAEPVVREALKAAPE----DCVFIYCDVGDRP------------------YW- 74 (119)
T ss_pred cCCCeEEEEEEccCCCCCCCCCHh-HHhhchhHHHHHHHCCC----CCEEEEEEcCCcc------------------cc-
Confidence 358999999999 99998 99999999999998863 3667777776421 11
Q ss_pred CChHHHHHHHHHcCce-EeecCCCCCCcccccceEEEEEcCCCeEEE
Q 020776 252 GSPDEIRNIARAYRVY-YMKTAEEDSDYLVDHSIVMYLMSPKMEFVK 297 (321)
Q Consensus 252 ~~~d~~~~~a~~ygv~-~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~ 297 (321)
.+....+.+.|+|. .+|+ +++++..++++.
T Consensus 75 --~d~~~~~~~~~~I~~~iPT--------------~~~~~~~~~l~~ 105 (119)
T cd02952 75 --RDPNNPFRTDPKLTTGVPT--------------LLRWKTPQRLVE 105 (119)
T ss_pred --cCcchhhHhccCcccCCCE--------------EEEEcCCceecc
Confidence 23335667889998 8887 777765555543
No 119
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.55 E-value=2.8e-07 Score=80.46 Aligned_cols=71 Identities=11% Similarity=0.082 Sum_probs=55.8
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
+++|||+||++||++ |....|.|.++..+|. .+.++-|++|. . .+
T Consensus 83 ~~~VVV~Fya~wc~~-Ck~m~~~l~~LA~~~~-----~vkF~kVd~d~----------------------------~-~l 127 (175)
T cd02987 83 DTTVVVHIYEPGIPG-CAALNSSLLCLAAEYP-----AVKFCKIRASA----------------------------T-GA 127 (175)
T ss_pred CcEEEEEEECCCCch-HHHHHHHHHHHHHHCC-----CeEEEEEeccc----------------------------h-hh
Confidence 459999999999998 9999999999998884 36666555431 1 45
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
+..|+|...| ++++-++|+++..+.+
T Consensus 128 ~~~f~v~~vP---------------Tlllyk~G~~v~~~vG 153 (175)
T cd02987 128 SDEFDTDALP---------------ALLVYKGGELIGNFVR 153 (175)
T ss_pred HHhCCCCCCC---------------EEEEEECCEEEEEEec
Confidence 7788998888 5777789999987643
No 120
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.52 E-value=5.6e-07 Score=81.24 Aligned_cols=147 Identities=18% Similarity=0.282 Sum_probs=98.0
Q ss_pred ccCCCCCCCCCCCCCeEEEcCCCCe-eeccccC--CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEe
Q 020776 149 VKQGPSVGKAAIGGPFKLINHDGKN-VTEKDFL--GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFIS 225 (321)
Q Consensus 149 ~~~~~~vG~~aP~p~f~l~d~~G~~-vsLsd~k--GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS 225 (321)
......+|.+|| |..+.+.+|+. .++-||. ++|+||+|..-.||+ -...+..++++.++|.+. .++.+|.|.
T Consensus 69 l~~~a~~G~~AP--ns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPp-F~~~l~~f~~l~~~f~d~--adFl~VYI~ 143 (237)
T PF00837_consen 69 LFKEAKLGGPAP--NSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPP-FMAKLDAFKRLVEDFSDV--ADFLIVYIE 143 (237)
T ss_pred cccceeCCCCCC--CCceEeeCCCcceeHHHhccCCCCeEEEcccccchH-HHHHHHHHHHHHHHhhhh--hheehhhHh
Confidence 345667899999 99999999999 8999984 699999999999998 999999999999999875 245444442
Q ss_pred ----eCCC------------CCCHHHH--HHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEE
Q 020776 226 ----VDPE------------RDTVEQV--REYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMY 287 (321)
Q Consensus 226 ----~Dp~------------~Dt~e~l--~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~ 287 (321)
.|.+ +...|.+ .+...+..+.++++-.+. +....++||..... +|
T Consensus 144 EAHpsDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~~~~pi~vD~m--dN~~~~~YgA~PeR---------------ly 206 (237)
T PF00837_consen 144 EAHPSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEFPQCPIVVDTM--DNNFNKAYGALPER---------------LY 206 (237)
T ss_pred hhCcCCCccCCCCceeecCCCCHHHHHHHHHHHHhhCCCCCEEEEcc--CCHHHHHhCCCcce---------------EE
Confidence 1210 0011111 223333346677764433 34567888876543 78
Q ss_pred EEcCCCeEEEEeCCCCChhHHHHHHHHHHHHH
Q 020776 288 LMSPKMEFVKFFGKNNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 288 LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~~ 319 (321)
||. +|+|++.-+. ....=..+++++.|+++
T Consensus 207 Ii~-~gkv~Y~Gg~-GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 207 IIQ-DGKVVYKGGP-GPFGYSPEELREWLEKY 236 (237)
T ss_pred EEE-CCEEEEeCCC-CCCcCCHHHHHHHHHhc
Confidence 885 9999887422 11222355566666554
No 121
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.51 E-value=4.2e-07 Score=90.27 Aligned_cols=91 Identities=12% Similarity=0.113 Sum_probs=62.3
Q ss_pred cCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHH
Q 020776 179 FLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIR 258 (321)
Q Consensus 179 ~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~ 258 (321)
.+++++||+||++||++ |+.+.|.+.++.++|+++ ++.++.|++|.+ ...
T Consensus 369 ~~~k~VLV~FyApWC~~-Ck~m~P~~eelA~~~~~~---~v~~~kVdvD~~--------------------------~~~ 418 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPF-CQAMEASYLELAEKLAGS---GVKVAKFRADGD--------------------------QKE 418 (463)
T ss_pred cCCCeEEEEEECCCChH-HHHHHHHHHHHHHHhccC---CcEEEEEECCCC--------------------------ccH
Confidence 36899999999999998 999999999999999754 466777777632 001
Q ss_pred HHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe-CCCCChhHHHHHHH
Q 020776 259 NIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF-GKNNDVNSLADGII 313 (321)
Q Consensus 259 ~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~-~~~~~~~~l~~~l~ 313 (321)
...+.|+|...|+ ++++.++..-...| ++..+.+.+...|.
T Consensus 419 ~~~~~~~I~~~PT--------------ii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~ 460 (463)
T TIGR00424 419 FAKQELQLGSFPT--------------ILFFPKHSSRPIKYPSEKRDVDSLMSFVN 460 (463)
T ss_pred HHHHHcCCCccce--------------EEEEECCCCCceeCCCCCCCHHHHHHHHH
Confidence 2245788988886 55554433222234 34677776655443
No 122
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.49 E-value=4.4e-07 Score=89.52 Aligned_cols=92 Identities=18% Similarity=0.262 Sum_probs=70.0
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
++++++|.||++||++ |....|.+.++.+.+.+. +.++.++.|.+|. ..+
T Consensus 17 ~~~~~~v~f~a~wC~~-c~~~~~~~~~~a~~~~~~-~~~v~~~~vd~~~----------------------------~~~ 66 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGH-CKSLAPEYEKAADELKKK-GPPIKLAKVDATE----------------------------EKD 66 (462)
T ss_pred cCCCEEEEEECCCCHH-HHhhhHHHHHHHHHHhhc-CCceEEEEEECCC----------------------------cHH
Confidence 5789999999999998 999999999999998765 3457666666542 135
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeE-EEEeCCCCChhHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEF-VKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~I-v~~~~~~~~~~~l~~~l~~~L 316 (321)
+.+.|+|...|+ ++++ ++|.. +..+.|..+.+.+.+.+.+.+
T Consensus 67 l~~~~~i~~~Pt--------------~~~~-~~g~~~~~~~~g~~~~~~l~~~i~~~~ 109 (462)
T TIGR01130 67 LAQKYGVSGYPT--------------LKIF-RNGEDSVSDYNGPRDADGIVKYMKKQS 109 (462)
T ss_pred HHHhCCCccccE--------------EEEE-eCCccceeEecCCCCHHHHHHHHHHhc
Confidence 678899988885 4554 57776 666778888888777776654
No 123
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.43 E-value=1.1e-06 Score=68.87 Aligned_cols=41 Identities=12% Similarity=0.201 Sum_probs=35.5
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
|+++++.|+++||++ |....+.+.++.++|++ ++.++.|+.
T Consensus 12 ~~~~~~~f~~~~~~~-~~~~~~~~~~vA~~~~~----~v~f~~vd~ 52 (103)
T cd02982 12 GKPLLVLFYNKDDSE-SEELRERFKEVAKKFKG----KLLFVVVDA 52 (103)
T ss_pred CCCEEEEEEcCChhh-HHHHHHHHHHHHHHhCC----eEEEEEEch
Confidence 789999999999998 99999999999999974 376666553
No 124
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.39 E-value=2.3e-06 Score=75.72 Aligned_cols=70 Identities=20% Similarity=0.143 Sum_probs=55.0
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
++++|||.||++||++ |....+.|.++..+|. .+.++-|.+| .
T Consensus 101 ~~~~VVV~Fya~wc~~-C~~m~~~l~~LA~k~~-----~vkFvkI~ad----------------------------~--- 143 (192)
T cd02988 101 KDTWVVVHLYKDGIPL-CRLLNQHLSELARKFP-----DTKFVKIIST----------------------------Q--- 143 (192)
T ss_pred CCCEEEEEEECCCCch-HHHHHHHHHHHHHHCC-----CCEEEEEEhH----------------------------H---
Confidence 3569999999999998 9999999999999984 3555655532 0
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
....|++...| ++++-++|+++..+.|
T Consensus 144 ~~~~~~i~~lP---------------Tlliyk~G~~v~~ivG 170 (192)
T cd02988 144 CIPNYPDKNLP---------------TILVYRNGDIVKQFIG 170 (192)
T ss_pred hHhhCCCCCCC---------------EEEEEECCEEEEEEeC
Confidence 13568888888 5788899999988755
No 125
>PLN02309 5'-adenylylsulfate reductase
Probab=98.35 E-value=2.6e-06 Score=84.59 Aligned_cols=90 Identities=16% Similarity=0.208 Sum_probs=62.7
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
++|++||+||++||++ |+.+.|.+.++.++|... ++.++.|++|.. ...
T Consensus 364 ~~k~vlV~FyApWC~~-Cq~m~p~~e~LA~~~~~~---~V~f~kVD~d~~---------------------------~~~ 412 (457)
T PLN02309 364 RKEPWLVVLYAPWCPF-CQAMEASYEELAEKLAGS---GVKVAKFRADGD---------------------------QKE 412 (457)
T ss_pred CCCeEEEEEECCCChH-HHHHHHHHHHHHHHhccC---CeEEEEEECCCc---------------------------chH
Confidence 5899999999999998 999999999999998644 577777765511 122
Q ss_pred HHH-HcCceEeecCCCCCCcccccceEEEEEcCCC-eEEEEeCCCCChhHHHHHHHH
Q 020776 260 IAR-AYRVYYMKTAEEDSDYLVDHSIVMYLMSPKM-EFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 260 ~a~-~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG-~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
+++ .|+|...|+ ++++.+.. ..+.+.++..+.+.+.+.|..
T Consensus 413 la~~~~~I~~~PT--------------il~f~~g~~~~v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 413 FAKQELQLGSFPT--------------ILLFPKNSSRPIKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred HHHhhCCCceeeE--------------EEEEeCCCCCeeecCCCCcCHHHHHHHHHH
Confidence 343 589998887 55554433 233333345677766666554
No 126
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.34 E-value=2.9e-06 Score=76.19 Aligned_cols=91 Identities=14% Similarity=0.085 Sum_probs=64.7
Q ss_pred cCCCeEEEEEec---CCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChH
Q 020776 179 FLGKWTVIYFGF---THCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPD 255 (321)
Q Consensus 179 ~kGK~vLL~Fwa---twCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d 255 (321)
.++...++.|.+ +||++ |+...|.+.++.+++. ++.+..+.+|. |
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~-C~~~~p~l~~la~~~~-----~~~i~~v~vd~--------------------------~ 64 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQY-CKETEQLLEELSEVSP-----KLKLEIYDFDT--------------------------P 64 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCc-hHHHHHHHHHHHhhCC-----CceEEEEecCC--------------------------c
Confidence 455555666777 99998 9999999999998883 24444556552 2
Q ss_pred HHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEE-EeCCCCChhHHHHHHHHHH
Q 020776 256 EIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVK-FFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 256 ~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~-~~~~~~~~~~l~~~l~~~L 316 (321)
...++++.|+|...|+ +++-++|+.+. ++.|..+.+++.+.|+.++
T Consensus 65 ~~~~l~~~~~V~~~Pt---------------~~~f~~g~~~~~~~~G~~~~~~l~~~i~~~~ 111 (215)
T TIGR02187 65 EDKEEAEKYGVERVPT---------------TIILEEGKDGGIRYTGIPAGYEFAALIEDIV 111 (215)
T ss_pred ccHHHHHHcCCCccCE---------------EEEEeCCeeeEEEEeecCCHHHHHHHHHHHH
Confidence 2356789999999995 44545777764 6777777777777666654
No 127
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.32 E-value=3.1e-06 Score=78.01 Aligned_cols=107 Identities=20% Similarity=0.221 Sum_probs=81.9
Q ss_pred ccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChH
Q 020776 176 EKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPD 255 (321)
Q Consensus 176 Lsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d 255 (321)
+.++..++-|++|+.+.|+. |....|.|+.+.++|+ +.++.||+|.... ..|+.. -
T Consensus 145 i~~la~~~gL~fFy~~~C~~-C~~~apil~~fa~~yg------i~v~~VS~DG~~~-------------p~fp~~----~ 200 (256)
T TIGR02739 145 IQQLSQSYGLFFFYRGKSPI-SQKMAPVIQAFAKEYG------ISVIPISVDGTLI-------------PGLPNS----R 200 (256)
T ss_pred HHHHHhceeEEEEECCCCch-hHHHHHHHHHHHHHhC------CeEEEEecCCCCC-------------CCCCCc----c
Confidence 45566889999999999997 9999999999999883 7778889885421 122222 1
Q ss_pred HHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCC-CeEEEEeCCCCChhHHHHHHHHHHHHHh
Q 020776 256 EIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPK-MEFVKFFGKNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 256 ~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~d-G~Iv~~~~~~~~~~~l~~~l~~~L~~~k 320 (321)
.+...++.+|+..+|+ +|||+++ +++.-...|.++.++|.+.+...+..++
T Consensus 201 ~d~gqa~~l~v~~~Pa--------------l~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~~~f~ 252 (256)
T TIGR02739 201 SDSGQAQHLGVKYFPA--------------LYLVNPKSQKMSPLAYGFISQDELKERILNVLTQFK 252 (256)
T ss_pred CChHHHHhcCCccCce--------------EEEEECCCCcEEEEeeccCCHHHHHHHHHHHHhccc
Confidence 2345688899988887 9999999 5554445688999999999998887663
No 128
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.31 E-value=2.2e-06 Score=77.38 Aligned_cols=92 Identities=20% Similarity=0.195 Sum_probs=69.9
Q ss_pred ccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChH
Q 020776 176 EKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPD 255 (321)
Q Consensus 176 Lsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d 255 (321)
++.-.+|.|+|+|.++||.| |....|.+..+..+|.. .+++-|.+ |
T Consensus 16 ls~ag~k~v~Vdfta~wCGP-Ck~IaP~Fs~lankYp~-----aVFlkVdV----------------------------d 61 (288)
T KOG0908|consen 16 LSAAGGKLVVVDFTASWCGP-CKRIAPIFSDLANKYPG-----AVFLKVDV----------------------------D 61 (288)
T ss_pred hhccCceEEEEEEEecccch-HHhhhhHHHHhhhhCcc-----cEEEEEeH----------------------------H
Confidence 44445799999999999999 99999999999999953 44444443 3
Q ss_pred HHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 256 EIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 256 ~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
.-+..+..+||..+| +||.-.+|.-+..+.| .|+..|++.|.+.+.
T Consensus 62 ~c~~taa~~gV~amP---------------TFiff~ng~kid~~qG-Ad~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 62 ECRGTAATNGVNAMP---------------TFIFFRNGVKIDQIQG-ADASGLEEKVAKYAS 107 (288)
T ss_pred HhhchhhhcCcccCc---------------eEEEEecCeEeeeecC-CCHHHHHHHHHHHhc
Confidence 345567789999999 5788889988888744 566667777766553
No 129
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.30 E-value=3.3e-06 Score=76.06 Aligned_cols=99 Identities=19% Similarity=0.283 Sum_probs=73.7
Q ss_pred ccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChH
Q 020776 176 EKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPD 255 (321)
Q Consensus 176 Lsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d 255 (321)
+.++.+++-|++|+.+.|+. |..+.|.|+.+.++|+ +.++.||+|.... ..|+.. -
T Consensus 115 l~~la~~~gL~~F~~~~C~~-C~~~~pil~~~~~~yg------~~v~~vs~DG~~~-------------~~fp~~----~ 170 (215)
T PF13728_consen 115 LKQLAQKYGLFFFYRSDCPY-CQQQAPILQQFADKYG------FSVIPVSLDGRPI-------------PSFPNP----R 170 (215)
T ss_pred HHHHhhCeEEEEEEcCCCch-hHHHHHHHHHHHHHhC------CEEEEEecCCCCC-------------cCCCCC----C
Confidence 45567899999999999996 9999999999999983 6677888885321 122221 1
Q ss_pred HHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCC-eEEEEeCCCCChhHHHHHH
Q 020776 256 EIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKM-EFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 256 ~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG-~Iv~~~~~~~~~~~l~~~l 312 (321)
.+..+++.|||..+|+ +|||++++ ++.-...|.++.++|.+.|
T Consensus 171 ~~~g~~~~l~v~~~Pa--------------l~Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 171 PDPGQAKRLGVKVTPA--------------LFLVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred CCHHHHHHcCCCcCCE--------------EEEEECCCCeEEEEeeecCCHHHHHHhh
Confidence 1355788899988887 99999988 4444456888888887654
No 130
>PTZ00062 glutaredoxin; Provisional
Probab=98.24 E-value=5.4e-06 Score=74.01 Aligned_cols=75 Identities=11% Similarity=0.073 Sum_probs=56.8
Q ss_pred CeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHH
Q 020776 182 KWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIA 261 (321)
Q Consensus 182 K~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a 261 (321)
..+|++||++||++ |....+.|.++.++|. ++.++ .+|. |
T Consensus 18 g~~vl~f~a~w~~~-C~~m~~vl~~l~~~~~-----~~~F~--~V~~--------------------------d------ 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPE-YEQLMDVCNALVEDFP-----SLEFY--VVNL--------------------------A------ 57 (204)
T ss_pred CcEEEEEeCCCCcc-hHHHHHHHHHHHHHCC-----CcEEE--EEcc--------------------------c------
Confidence 56899999999998 9999999999999884 35555 4331 1
Q ss_pred HHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 262 RAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 262 ~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
|+|..+| +|++-++|+++.++.| .++.++...+.+
T Consensus 58 --~~V~~vP---------------tfv~~~~g~~i~r~~G-~~~~~~~~~~~~ 92 (204)
T PTZ00062 58 --DANNEYG---------------VFEFYQNSQLINSLEG-CNTSTLVSFIRG 92 (204)
T ss_pred --cCcccce---------------EEEEEECCEEEeeeeC-CCHHHHHHHHHH
Confidence 7888888 4666689999999854 456666665544
No 131
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.20 E-value=1.1e-05 Score=60.50 Aligned_cols=33 Identities=21% Similarity=0.235 Sum_probs=27.3
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEE
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPA 222 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV 222 (321)
.|.||++||++ |....|.++++.+++.. .+.++
T Consensus 2 ~i~~~a~~C~~-C~~~~~~~~~~~~e~~~----~~~~~ 34 (76)
T TIGR00412 2 KIQIYGTGCAN-CQMTEKNVKKAVEELGI----DAEFE 34 (76)
T ss_pred EEEEECCCCcC-HHHHHHHHHHHHHHcCC----CeEEE
Confidence 37899999998 99999999999998752 45554
No 132
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.18 E-value=7.3e-06 Score=73.63 Aligned_cols=84 Identities=17% Similarity=0.215 Sum_probs=56.2
Q ss_pred cCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHH
Q 020776 179 FLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIR 258 (321)
Q Consensus 179 ~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~ 258 (321)
+++.++++.||++||++ |....+.++++..++. ++.+.-|+.| ...
T Consensus 131 ~~~pv~I~~F~a~~C~~-C~~~~~~l~~l~~~~~-----~i~~~~vD~~----------------------------~~~ 176 (215)
T TIGR02187 131 LDEPVRIEVFVTPTCPY-CPYAVLMAHKFALAND-----KILGEMIEAN----------------------------ENP 176 (215)
T ss_pred cCCCcEEEEEECCCCCC-cHHHHHHHHHHHHhcC-----ceEEEEEeCC----------------------------CCH
Confidence 44555667799999998 9988887777765531 4554444432 124
Q ss_pred HHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 259 NIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 259 ~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
++++.|+|...|+ ++++.+|+. +.|....+++.+.|.+
T Consensus 177 ~~~~~~~V~~vPt---------------l~i~~~~~~---~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 177 DLAEKYGVMSVPK---------------IVINKGVEE---FVGAYPEEQFLEYILS 214 (215)
T ss_pred HHHHHhCCccCCE---------------EEEecCCEE---EECCCCHHHHHHHHHh
Confidence 5677899999884 667778864 4466666666666553
No 133
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.16 E-value=1e-05 Score=74.14 Aligned_cols=107 Identities=17% Similarity=0.143 Sum_probs=80.3
Q ss_pred ccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChH
Q 020776 176 EKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPD 255 (321)
Q Consensus 176 Lsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d 255 (321)
+.++.+++-|++|+.+.||. |..+.|.|+.+.++|+ +.++.||+|.... +.|+...
T Consensus 138 i~~la~~~GL~fFy~s~Cp~-C~~~aPil~~fa~~yg------~~v~~VS~DG~~~-------------p~fp~~~---- 193 (248)
T PRK13703 138 IAKLAEHYGLMFFYRGQDPI-DGQLAQVINDFRDTYG------LSVIPVSVDGVIN-------------PLLPDSR---- 193 (248)
T ss_pred HHHHHhcceEEEEECCCCch-hHHHHHHHHHHHHHhC------CeEEEEecCCCCC-------------CCCCCCc----
Confidence 45566789999999999997 9999999999999983 6778889885321 1232221
Q ss_pred HHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCC-eEEEEeCCCCChhHHHHHHHHHHHHHh
Q 020776 256 EIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKM-EFVKFFGKNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 256 ~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG-~Iv~~~~~~~~~~~l~~~l~~~L~~~k 320 (321)
.+...++.+|+..+|. +||||++. ++.-...|.++.++|.+.+......++
T Consensus 194 ~d~gqa~~l~v~~~PA--------------l~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~t~~~ 245 (248)
T PRK13703 194 TDQGQAQRLGVKYFPA--------------LMLVDPKSGSVRPLSYGFITQDDLAKRFLNVSTDFK 245 (248)
T ss_pred cChhHHHhcCCcccce--------------EEEEECCCCcEEEEeeccCCHHHHHHHHHHHHhccC
Confidence 1223457889888776 99999985 555555688999999999988876553
No 134
>PHA02125 thioredoxin-like protein
Probab=98.07 E-value=3.5e-05 Score=57.49 Aligned_cols=22 Identities=27% Similarity=0.535 Sum_probs=19.1
Q ss_pred EEEEecCCCCCCcHHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAAA 207 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l 207 (321)
+++||++||++ |+...|.|.++
T Consensus 2 iv~f~a~wC~~-Ck~~~~~l~~~ 23 (75)
T PHA02125 2 IYLFGAEWCAN-CKMVKPMLANV 23 (75)
T ss_pred EEEEECCCCHh-HHHHHHHHHHH
Confidence 68999999998 99988888654
No 135
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.06 E-value=3.7e-05 Score=59.56 Aligned_cols=79 Identities=14% Similarity=0.198 Sum_probs=56.1
Q ss_pred ccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChH
Q 020776 176 EKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPD 255 (321)
Q Consensus 176 Lsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d 255 (321)
+.++++.+.+..|++.||++ |+...+.+.++..++. ++.+.-+.+|
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~-C~~~~~~~~~l~~~~~-----~i~~~~vd~~---------------------------- 52 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHN-CPDVVQALNLMAVLNP-----NIEHEMIDGA---------------------------- 52 (89)
T ss_pred HHhcCCCEEEEEEECCCCCC-cHHHHHHHHHHHHHCC-----CceEEEEEhH----------------------------
Confidence 34677888899999999998 9999898988887653 3444444432
Q ss_pred HHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhH
Q 020776 256 EIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNS 307 (321)
Q Consensus 256 ~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~ 307 (321)
...++++.|+|..+|+ +++ ||+++.. |..+.++
T Consensus 53 ~~~e~a~~~~V~~vPt---------------~vi--dG~~~~~--G~~~~~e 85 (89)
T cd03026 53 LFQDEVEERGIMSVPA---------------IFL--NGELFGF--GRMTLEE 85 (89)
T ss_pred hCHHHHHHcCCccCCE---------------EEE--CCEEEEe--CCCCHHH
Confidence 2245688999999995 455 6888774 4444444
No 136
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.04 E-value=3.6e-05 Score=63.86 Aligned_cols=25 Identities=12% Similarity=0.188 Sum_probs=21.5
Q ss_pred cCCCeEEEEEecCCCCCCcHHHHHHH
Q 020776 179 FLGKWTVIYFGFTHCPDICPDELQKL 204 (321)
Q Consensus 179 ~kGK~vLL~FwatwCp~vC~~elp~L 204 (321)
-.+|+|+|+|++.||++ |...-...
T Consensus 21 ~~~Kpvmv~f~sdwC~~-Ck~l~k~~ 45 (130)
T cd02960 21 KSNKPLMVIHHLEDCPH-SQALKKAF 45 (130)
T ss_pred HCCCeEEEEEeCCcCHh-HHHHHHHh
Confidence 46899999999999998 99876654
No 137
>smart00594 UAS UAS domain.
Probab=98.03 E-value=4.5e-05 Score=62.39 Aligned_cols=91 Identities=15% Similarity=0.211 Sum_probs=61.9
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHHH---HHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCC
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQKL---AAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGS 253 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~L---~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~ 253 (321)
+.-.+|+++|+|++.||++ |......+ .++.+.+.+ +++++.++++
T Consensus 23 Ak~~~K~~lv~~~~~~c~~-c~~~~r~vl~~~~V~~~i~~----~fv~~~~dv~-------------------------- 71 (122)
T smart00594 23 ASRQRRLLWLYLHSQDSPD-SQVFNRDVLCNEAVKSLIRE----NFIFWQVDVD-------------------------- 71 (122)
T ss_pred HHhhcCCEEEEEeCCCCch-HHHHHHHHccCHHHHHHHHc----CEEEEEecCC--------------------------
Confidence 3346899999999999998 98866542 123333322 3444333322
Q ss_pred hHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCC-----eEEEEeCCCCChhHHHHHH
Q 020776 254 PDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKM-----EFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 254 ~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG-----~Iv~~~~~~~~~~~l~~~l 312 (321)
..+...++..|++...|+ +.++|++| .++.+..|..+++++...|
T Consensus 72 ~~eg~~l~~~~~~~~~P~--------------~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 72 TSEGQRVSQFYKLDSFPY--------------VAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred ChhHHHHHHhcCcCCCCE--------------EEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 122356788899888887 89999998 5677788888888877655
No 138
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=97.96 E-value=2.7e-05 Score=76.85 Aligned_cols=90 Identities=16% Similarity=0.201 Sum_probs=63.2
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.++.+||+||++||++ |....|.+.++.+.+++. ...+.++.|++|.+ +
T Consensus 363 ~~~~vlv~f~a~wC~~-C~~~~p~~~~~~~~~~~~-~~~i~~~~id~~~n-~---------------------------- 411 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGH-CKNLAPIYEELAEKYKDA-ESDVVIAKMDATAN-D---------------------------- 411 (462)
T ss_pred CCCeEEEEEECCCCHh-HHHHHHHHHHHHHHhhcC-CCcEEEEEEECCCC-c----------------------------
Confidence 4799999999999998 999999999999999852 12476666665421 0
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeE-EEEeCCCCChhHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEF-VKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~I-v~~~~~~~~~~~l~~~l~~~ 315 (321)
+.. |++...|+ +++..+.++. ...+.|..+.+.+.+.|.+.
T Consensus 412 ~~~-~~i~~~Pt--------------~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 412 VPP-FEVEGFPT--------------IKFVPAGKKSEPVPYDGDRTLEDFSKFIAKH 453 (462)
T ss_pred cCC-CCccccCE--------------EEEEeCCCCcCceEecCcCCHHHHHHHHHhc
Confidence 112 66777776 7777666653 24455777777766666554
No 139
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.86 E-value=3.8e-05 Score=59.10 Aligned_cols=49 Identities=20% Similarity=0.352 Sum_probs=39.0
Q ss_pred eeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 173 NVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 173 ~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
......++++++++.||++||++ |....|.+.++.+++.. .+.++.+..
T Consensus 24 ~~~~~~~~~~~~~v~f~~~~C~~-C~~~~~~l~~~~~~~~~----~~~~~~i~~ 72 (127)
T COG0526 24 PLSLSELKGKPVLVDFWAPWCPP-CRAEAPLLEELAEEYGG----DVEVVAVNV 72 (127)
T ss_pred ceehhhcCCceEEEEEEcCcCHH-HHhhchhHHHHHHHhcC----CcEEEEEEC
Confidence 34444555899999999999998 99999999999999864 355566664
No 140
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=3.6e-05 Score=76.60 Aligned_cols=91 Identities=16% Similarity=0.216 Sum_probs=72.0
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
....+||.|+|+||.+ |....|...+..+.+++. +..+.+.- +|. ...+.
T Consensus 41 ~~~~vlVeFYAPWCgh-ck~LaPey~kAA~~Lke~-~s~i~Lak--VDa--------------------------t~~~~ 90 (493)
T KOG0190|consen 41 GHEFVLVEFYAPWCGH-CKALAPEYEKAATELKEE-GSPVKLAK--VDA--------------------------TEESD 90 (493)
T ss_pred cCceEEEEEEchhhhh-hhhhCcHHHHHHHHhhcc-CCCceeEE--eec--------------------------chhhh
Confidence 4568999999999998 999999999999999877 44555443 332 12256
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
++.+|+|...| |+.|.++|+....|.|..+.+.+...+++.
T Consensus 91 ~~~~y~v~gyP---------------TlkiFrnG~~~~~Y~G~r~adgIv~wl~kq 131 (493)
T KOG0190|consen 91 LASKYEVRGYP---------------TLKIFRNGRSAQDYNGPREADGIVKWLKKQ 131 (493)
T ss_pred hHhhhcCCCCC---------------eEEEEecCCcceeccCcccHHHHHHHHHhc
Confidence 78899999988 578889999877788888888888877664
No 141
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.79 E-value=0.00018 Score=51.97 Aligned_cols=38 Identities=24% Similarity=0.418 Sum_probs=27.8
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 184 TVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 184 vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
-+..|+++|||+ |....+.|+++.+.+. ++.+..+++|
T Consensus 2 ~v~~f~~~~C~~-C~~~~~~l~~l~~~~~-----~i~~~~id~~ 39 (67)
T cd02973 2 NIEVFVSPTCPY-CPDAVQAANRIAALNP-----NISAEMIDAA 39 (67)
T ss_pred EEEEEECCCCCC-cHHHHHHHHHHHHhCC-----ceEEEEEEcc
Confidence 467899999998 9999999888865431 3555555543
No 142
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.75 E-value=8.4e-05 Score=61.66 Aligned_cols=36 Identities=19% Similarity=0.342 Sum_probs=25.4
Q ss_pred ccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHh
Q 020776 176 EKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIK 212 (321)
Q Consensus 176 Lsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~ 212 (321)
++.+..+..++.|..+|||+ |...+|.|.++.+...
T Consensus 36 l~~~~~~~~ilvi~e~WCgD-~~~~vP~l~kiae~~p 71 (129)
T PF14595_consen 36 LKSIQKPYNILVITETWCGD-CARNVPVLAKIAEANP 71 (129)
T ss_dssp HHT--S-EEEEEE--TT-HH-HHHHHHHHHHHHHH-T
T ss_pred HHhcCCCcEEEEEECCCchh-HHHHHHHHHHHHHhCC
Confidence 44556778999999999999 9999999999998753
No 143
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.58 E-value=0.00025 Score=48.24 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=29.7
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
|+.||.+||+. |....+.+.++ ++.+ .++.++.++++.
T Consensus 1 l~~~~~~~c~~-c~~~~~~~~~~--~~~~---~~~~~~~~~~~~ 38 (69)
T cd01659 1 LVLFYAPWCPF-CQALRPVLAEL--ALLN---KGVKFEAVDVDE 38 (69)
T ss_pred CEEEECCCChh-HHhhhhHHHHH--HhhC---CCcEEEEEEcCC
Confidence 57899999997 99999999998 3332 257777777764
No 144
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.57 E-value=0.00021 Score=66.53 Aligned_cols=93 Identities=19% Similarity=0.168 Sum_probs=72.2
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
...|+|+|+|.||+. .+...|.+.+..++++++. .+-.+|.-.+| .|....+
T Consensus 13 ~elvfv~FyAdWCrF-Sq~L~piF~EAa~~~~~e~-P~~kvvwg~VD--------------------------cd~e~~i 64 (375)
T KOG0912|consen 13 NELVFVNFYADWCRF-SQMLKPIFEEAAAKFKQEF-PEGKVVWGKVD--------------------------CDKEDDI 64 (375)
T ss_pred ceEEeeeeehhhchH-HHHHhHHHHHHHHHHHHhC-CCcceEEEEcc--------------------------cchhhHH
Confidence 568999999999997 9999999999999998873 22344555555 3333457
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEE-eCCCCChhHHHHHHHHHH
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKF-FGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~-~~~~~~~~~l~~~l~~~L 316 (321)
+.+|.|...|+ +=|-.+|.+..+ |.|..+.+.+.+.|++.+
T Consensus 65 a~ky~I~KyPT---------------lKvfrnG~~~~rEYRg~RsVeaL~efi~kq~ 106 (375)
T KOG0912|consen 65 ADKYHINKYPT---------------LKVFRNGEMMKREYRGQRSVEALIEFIEKQL 106 (375)
T ss_pred hhhhccccCce---------------eeeeeccchhhhhhccchhHHHHHHHHHHHh
Confidence 88999999885 455578988774 778888898888887765
No 145
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.0015 Score=55.06 Aligned_cols=132 Identities=25% Similarity=0.298 Sum_probs=88.6
Q ss_pred CCCCCCCCCCCeEEE----cCCCC-eeeccc-cCCCeEEEEEe-cCCCCCCcHH-HHHHHHHHHHHHhhhcCCc-EEEEE
Q 020776 153 PSVGKAAIGGPFKLI----NHDGK-NVTEKD-FLGKWTVIYFG-FTHCPDICPD-ELQKLAAAVDKIKENSGID-IVPAF 223 (321)
Q Consensus 153 ~~vG~~aP~p~f~l~----d~~G~-~vsLsd-~kGK~vLL~Fw-atwCp~vC~~-elp~L~~l~~~~~~~~g~~-v~vV~ 223 (321)
..+|++.|...|... +.+|- .++..+ ++||.|+|+=- +..-|. |.. .+|...+++++++++ |++ |.+
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPT-CS~~hlPgY~~~~d~f~~k-GVD~I~c-- 78 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPT-CSSSHLPGYLELADEFKAK-GVDEIYC-- 78 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCC-cccccCccHHHHHHHHHHc-CCceEEE--
Confidence 357888884444444 33442 345555 57888777554 333454 886 899999999999988 654 434
Q ss_pred EeeCCCCCCHHHHHHHHHHhCCC--ceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe
Q 020776 224 ISVDPERDTVEQVREYVKEFHPK--LIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF 299 (321)
Q Consensus 224 IS~Dp~~Dt~e~l~~~~~~~~~~--~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~ 299 (321)
||++ ++-.+.+|.+..+.. ..++ .|-..++.+..|...... +..+.+.+.++-.|| +||.|.+.+
T Consensus 79 VSVN----D~FVm~AWak~~g~~~~I~fi---~Dg~geFTk~~Gm~~d~~---~~g~G~RS~RYsmvV-~nGvV~~~~ 145 (165)
T COG0678 79 VSVN----DAFVMNAWAKSQGGEGNIKFI---PDGNGEFTKAMGMLVDKS---DLGFGVRSWRYSMVV-ENGVVEKLF 145 (165)
T ss_pred EEeC----cHHHHHHHHHhcCCCccEEEe---cCCCchhhhhcCceeecc---cCCcceeeeeEEEEE-eCCeEEEEE
Confidence 4543 468999999999865 4555 777889999999877554 223344555555555 699887765
No 146
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=97.42 E-value=0.0011 Score=59.79 Aligned_cols=116 Identities=11% Similarity=0.082 Sum_probs=78.2
Q ss_pred CeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCC-cEEEEEEeeCCCCCCHHHHHHHHH
Q 020776 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGI-DIVPAFISVDPERDTVEQVREYVK 241 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~-~v~vV~IS~Dp~~Dt~e~l~~~~~ 241 (321)
.+++- ......+.+|+++||.+.-.+|.. |..++..|..|..+++++ |. +|.++.|+- .......+...++
T Consensus 12 ~W~i~----~~~pm~~~~G~VtvVALL~asc~~-c~~qa~~le~Lr~kL~~~-g~~~I~f~vVN~--~~~~s~~~~~~l~ 83 (238)
T PF04592_consen 12 PWKIG----GQDPMLNSLGHVTVVALLQASCYF-CLLQASRLEDLREKLENE-GLSNISFMVVNH--QGEHSRLKYWELK 83 (238)
T ss_pred CceEC----CchHhhhcCCcEEeeeehhhhhHH-HHHHHHHHHHHHHHHHHC-CCCceEEEEEcC--CCcchhHHHHHHH
Confidence 67663 244567889999999999999997 999999999999999988 55 787777763 2122233333333
Q ss_pred Hh-CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC
Q 020776 242 EF-HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN 302 (321)
Q Consensus 242 ~~-~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~ 302 (321)
+. ..+++++-.+ .....++..++-.... +||+|+-|++++...-+
T Consensus 84 ~r~~~~ipVyqq~-~~q~dvW~~L~G~kdD---------------~~iyDRCGrL~~~i~~P 129 (238)
T PF04592_consen 84 RRVSEHIPVYQQD-ENQPDVWELLNGSKDD---------------FLIYDRCGRLTYHIPLP 129 (238)
T ss_pred HhCCCCCceecCC-ccccCHHHHhCCCcCc---------------EEEEeccCcEEEEecCc
Confidence 33 3346666221 2334566666543211 89999999999986443
No 147
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=97.40 E-value=0.0012 Score=53.73 Aligned_cols=93 Identities=11% Similarity=0.101 Sum_probs=57.6
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
+.+.+||.|+++| |. |.+ .|..+++..+|... ...|.+--|.+|... .....+
T Consensus 17 ~~~~vlV~F~A~~-Pw-c~k-~~~~~~LA~e~~~a-a~~v~lakVd~~d~~-----------------------~~~~~~ 69 (116)
T cd03007 17 KFKYSLVKFDTAY-PY-GEK-HEAFTRLAESSASA-TDDLLVAEVGIKDYG-----------------------EKLNME 69 (116)
T ss_pred cCCcEEEEEeCCC-CC-CCC-hHHHHHHHHHHHhh-cCceEEEEEeccccc-----------------------chhhHH
Confidence 4578999999966 44 665 58888888888654 223554444443110 123356
Q ss_pred HHHHcCce--EeecCCCCCCcccccceEEEEEcCCCe--EEEEeCCC-CChhHHHHHHHH
Q 020776 260 IARAYRVY--YMKTAEEDSDYLVDHSIVMYLMSPKME--FVKFFGKN-NDVNSLADGIIK 314 (321)
Q Consensus 260 ~a~~ygv~--~~p~~~~~~~y~v~~~~~~~LID~dG~--Iv~~~~~~-~~~~~l~~~l~~ 314 (321)
++++|+|. ..|+ ++|+ ++|. -...|.+. .+.+.|.+.|.+
T Consensus 70 L~~~y~I~~~gyPT--------------l~lF-~~g~~~~~~~Y~G~~r~~~~lv~~v~~ 114 (116)
T cd03007 70 LGERYKLDKESYPV--------------IYLF-HGGDFENPVPYSGADVTVDALQRFLKG 114 (116)
T ss_pred HHHHhCCCcCCCCE--------------EEEE-eCCCcCCCccCCCCcccHHHHHHHHHh
Confidence 88999998 7885 4444 4553 22345564 777777766654
No 148
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.38 E-value=0.00044 Score=52.25 Aligned_cols=44 Identities=23% Similarity=0.446 Sum_probs=31.0
Q ss_pred cCCCeEEEEEecCCCCCCcHHHHHHH---HHHHHHHhhhcCCcEEEEEEeeC
Q 020776 179 FLGKWTVIYFGFTHCPDICPDELQKL---AAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 179 ~kGK~vLL~FwatwCp~vC~~elp~L---~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
-.||++||+|++.||++ |...-..+ .++.+.+.+ +++.|-|.+|
T Consensus 15 ~~~kpvlv~f~a~wC~~-C~~l~~~~~~~~~v~~~~~~----~fv~v~vd~~ 61 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPP-CKKLEREVFSDPEVQEALNK----NFVLVKVDVD 61 (82)
T ss_dssp HHTSEEEEEEETTTTHH-HHHHHHHTTTSHHHHHHHHH----CSEEEEEETT
T ss_pred HcCCCEEEEEECCCCHh-HHHHHHHHcCCHHHHHHHHC----CEEEEEEEcC
Confidence 35899999999999998 99877666 334443543 3655555543
No 149
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00093 Score=65.20 Aligned_cols=90 Identities=19% Similarity=0.278 Sum_probs=66.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
.+++.+|.||++||.+ |....|...++...+++ .+.+. .+| .+....
T Consensus 46 ~~~~~~v~fyapwc~~-c~~l~~~~~~~~~~l~~----~~~~~--~vd--------------------------~~~~~~ 92 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGH-CKKLAPTYKKLAKALKG----KVKIG--AVD--------------------------CDEHKD 92 (383)
T ss_pred cCCceEEEEECCCCcc-hhhhchHHHHHHHHhcC----ceEEE--EeC--------------------------chhhHH
Confidence 4689999999999998 99999999999988874 24433 443 344466
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
+.++|+|.+.|+ +.++.+...++ .+.+..+.+.+.+.+.+.++
T Consensus 93 ~~~~y~i~gfPt--------------l~~f~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 135 (383)
T KOG0191|consen 93 LCEKYGIQGFPT--------------LKVFRPGKKPI-DYSGPRNAESLAEFLIKELE 135 (383)
T ss_pred HHHhcCCccCcE--------------EEEEcCCCcee-eccCcccHHHHHHHHHHhhc
Confidence 788999999986 56666652333 34467778888877777664
No 150
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=97.34 E-value=0.002 Score=59.39 Aligned_cols=132 Identities=11% Similarity=0.070 Sum_probs=78.2
Q ss_pred CCCCCCeEEEcCCCCeeeccc-cCCCeEEEEEecC-CCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHH
Q 020776 158 AAIGGPFKLINHDGKNVTEKD-FLGKWTVIYFGFT-HCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQ 235 (321)
Q Consensus 158 ~aP~p~f~l~d~~G~~vsLsd-~kGK~vLL~Fwat-wCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~ 235 (321)
....|+|...+.+|+.+++.+ ++||+.||..+.+ |-.. |....-. ....+|..+.+..+++|-|++-. ..
T Consensus 98 AlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~-~~~sw~~--p~~~~~~~~~~~~~q~v~In~~e-----~~ 169 (252)
T PF05176_consen 98 ALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEE-MVDSWTS--PFLEDFLQEPYGRVQIVEINLIE-----NW 169 (252)
T ss_pred CCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHH-HHHHHhh--HHHHHHhhCCCCceEEEEEecch-----HH
Confidence 344579999999999988876 6899987765543 3333 4444322 34445544433368888888642 23
Q ss_pred HHHHHHHh-------------CCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC
Q 020776 236 VREYVKEF-------------HPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN 302 (321)
Q Consensus 236 l~~~~~~~-------------~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~ 302 (321)
++.++... +..+.+...+ .....+-+.+++....+ .++||||.+|+|+|.-.|.
T Consensus 170 ~k~~l~~~~~~~lrk~ip~~~h~~Yf~~~~~-~~~~~iRe~Lgi~N~~~------------GYvyLVD~~grIRWagsG~ 236 (252)
T PF05176_consen 170 LKSWLVKLFMGSLRKSIPEERHDRYFIVYRG-QLSDDIREALGINNSYV------------GYVYLVDPNGRIRWAGSGP 236 (252)
T ss_pred HHHHHHHHHhhhhhccCCHHHCceEEEEeCC-cccHHHHHHhCCCCCCc------------CeEEEECCCCeEEeCccCC
Confidence 33333322 1122222111 01234455566554333 3499999999999998888
Q ss_pred CChhHHHH
Q 020776 303 NDVNSLAD 310 (321)
Q Consensus 303 ~~~~~l~~ 310 (321)
.+++++..
T Consensus 237 At~~E~~~ 244 (252)
T PF05176_consen 237 ATPEELES 244 (252)
T ss_pred CCHHHHHH
Confidence 87766544
No 151
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.29 E-value=0.0022 Score=53.19 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=27.9
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHh
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIK 212 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~ 212 (321)
.++++|+.|+..+||+ |....+.+.++..++.
T Consensus 4 ~a~~~i~~f~D~~Cp~-C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 4 NGDVTIVEFFDYNCGY-CKKLAPELEKLLKEDP 35 (154)
T ss_pred CCCEEEEEEECCCChh-HHHhhHHHHHHHHHCC
Confidence 4789999999999998 9999999998876653
No 152
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.27 E-value=0.0022 Score=46.16 Aligned_cols=21 Identities=24% Similarity=0.545 Sum_probs=16.8
Q ss_pred EEEEecCCCCCCcHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAA 206 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~ 206 (321)
+..|+++||++ |....+.|.+
T Consensus 2 i~lf~~~~C~~-C~~~~~~l~~ 22 (74)
T TIGR02196 2 VKVYTTPWCPP-CKKAKEYLTS 22 (74)
T ss_pred EEEEcCCCChh-HHHHHHHHHH
Confidence 45789999998 9987776654
No 153
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=97.25 E-value=0.0059 Score=54.43 Aligned_cols=119 Identities=16% Similarity=0.254 Sum_probs=82.6
Q ss_pred CeEEEcCCCCeeeccc-cCCCeE--EEEEe-----cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHH
Q 020776 163 PFKLINHDGKNVTEKD-FLGKWT--VIYFG-----FTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVE 234 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd-~kGK~v--LL~Fw-----atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e 234 (321)
+..+...+|+ ++|.| |.|+-. |-.|. ..-|+. |...+..++-....+..+ ++.++.|| +...+
T Consensus 48 ~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~g-Cs~~~D~~~g~l~hL~~r---d~tfa~vS----raP~~ 118 (211)
T PF05988_consen 48 DYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPG-CSFWADHIDGALRHLHAR---DTTFAVVS----RAPLE 118 (211)
T ss_pred CeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCc-hhhhHhhhhhhHHHHHhC---CceEEEEe----CCCHH
Confidence 6888888886 89988 567643 33443 567998 999999997777888766 68888888 45579
Q ss_pred HHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 235 QVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 235 ~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
++.+|.+..|..++.++. ....+...|++...+.. -.+...+|+-|. |+|...|..
T Consensus 119 ~i~afk~rmGW~~pw~Ss---~gs~Fn~D~~~~~~~~~-------~~~g~svF~Rdg-~~VfhTyst 174 (211)
T PF05988_consen 119 KIEAFKRRMGWTFPWYSS---YGSDFNYDFGVSFDEGG-------EMPGLSVFLRDG-GRVFHTYST 174 (211)
T ss_pred HHHHHHHhcCCCceEEEc---CCCcccccccceeccCC-------CceeEEEEEEcC-CEEEEEeec
Confidence 999999999999888843 22334445666443321 012334666666 888777643
No 154
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.24 E-value=0.00062 Score=68.72 Aligned_cols=96 Identities=13% Similarity=0.168 Sum_probs=65.6
Q ss_pred ccCCCeEEEEEecCCCCCCcHHHHHHHH-HHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHH
Q 020776 178 DFLGKWTVIYFGFTHCPDICPDELQKLA-AAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDE 256 (321)
Q Consensus 178 d~kGK~vLL~FwatwCp~vC~~elp~L~-~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~ 256 (321)
+-++|+|+|+|+|.||-. |+..-+..= +.+...+-. +++.+ -.| +|.++..
T Consensus 471 ~~~~~pVmlDfyAdWCvt-CK~~e~~tfsd~~v~~~~~---~~vlL--qaD----------------------vT~~~p~ 522 (569)
T COG4232 471 EAKAKPVMLDFYADWCVT-CKENEKYTFSDPQVQQALQ---DVVLL--QAD----------------------VTANDPA 522 (569)
T ss_pred hCCCCcEEEeeehhHHHH-hHhhhhhccCcHHHHHhcC---CeEEE--Eee----------------------ecCCCHH
Confidence 335679999999999997 997654433 333333322 44443 333 1222456
Q ss_pred HHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 257 IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 257 ~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
+.++.+.||+...|+ +++++++|.-.....+.++.+.+.+.+++.
T Consensus 523 ~~~lLk~~~~~G~P~--------------~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 523 ITALLKRLGVFGVPT--------------YLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred HHHHHHHcCCCCCCE--------------EEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 677788899988887 889999998877777888888777777654
No 155
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.23 E-value=0.0022 Score=52.19 Aligned_cols=93 Identities=12% Similarity=0.095 Sum_probs=65.2
Q ss_pred ccCCCeEEEEEecC----CCCCCcHHHH--HHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeec
Q 020776 178 DFLGKWTVIYFGFT----HCPDICPDEL--QKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLT 251 (321)
Q Consensus 178 d~kGK~vLL~Fwat----wCp~vC~~el--p~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~ 251 (321)
.-.+|+++|+|+.. ||.. |...+ |.+.+.. . + ++.+.+.+++
T Consensus 14 k~e~K~llVylhs~~~~~~~~f-c~~~l~~~~v~~~l---n-~---~fv~w~~dv~------------------------ 61 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEF-CRNTLCAPEVIEYI---N-T---RMLFWACSVA------------------------ 61 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHH-HHHHcCCHHHHHHH---H-c---CEEEEEEecC------------------------
Confidence 34689999999999 6665 75544 3333332 2 2 3544444432
Q ss_pred CChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEE---cCCCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 252 GSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLM---SPKMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 252 ~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LI---D~dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
..+..+++..+++...|. +.+| +.+.+++.+..|..+++++...|...+++
T Consensus 62 --~~eg~~la~~l~~~~~P~--------------~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 62 --KPEGYRVSQALRERTYPF--------------LAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred --ChHHHHHHHHhCCCCCCE--------------EEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 122367888999988886 7777 77788899998999999999999888765
No 156
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.19 E-value=0.0038 Score=56.90 Aligned_cols=110 Identities=8% Similarity=0.017 Sum_probs=64.1
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC-CCCC-------------HHHHHHHHHHhCC
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP-ERDT-------------VEQVREYVKEFHP 245 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp-~~Dt-------------~e~l~~~~~~~~~ 245 (321)
.||.+|+.|....||+ |++..+.|.++.+ . ++.+.++.+.+.. ..+. ...+.++......
T Consensus 106 ~~k~~I~vFtDp~Cpy-Ckkl~~~l~~~~~----~-~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~ 179 (232)
T PRK10877 106 QEKHVITVFTDITCGY-CHKLHEQMKDYNA----L-GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDV 179 (232)
T ss_pred CCCEEEEEEECCCChH-HHHHHHHHHHHhc----C-CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCC
Confidence 5789999999999998 9999888877632 2 3445444333321 1111 1222222221111
Q ss_pred CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 246 KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 246 ~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
+-.......+...++++++||.++|+ ++ -+||+++ .|..+.+++.+.|.+
T Consensus 180 ~~~~c~~~v~~~~~la~~lgi~gTPt---------------iv-~~~G~~~---~G~~~~~~L~~~l~~ 229 (232)
T PRK10877 180 SPASCDVDIADHYALGVQFGVQGTPA---------------IV-LSNGTLV---PGYQGPKEMKAFLDE 229 (232)
T ss_pred CcccccchHHHhHHHHHHcCCccccE---------------EE-EcCCeEe---eCCCCHHHHHHHHHH
Confidence 11111223566778899999999985 33 3578776 366676666555543
No 157
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0085 Score=50.91 Aligned_cols=103 Identities=11% Similarity=0.129 Sum_probs=69.1
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHHH---HHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCC
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQKL---AAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGS 253 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~L---~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~ 253 (321)
..-++|+.+|.|-...|+. |...-..+ .++++-+.+ .+.++.+.+..... . .+..|+
T Consensus 38 i~~~~Kylllmfes~~C~y-C~~~KKd~~~~krlrEylk~----hf~~~~l~i~~skp--------------v-~f~~g~ 97 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSY-CERFKKDLKNVKRLREYLKE----HFSAYYLNISYSKP--------------V-LFKVGD 97 (182)
T ss_pred cCccCcEEEEEEcCCCChH-HHHHHHhhcchHHHHHHHhh----CeEEEEEEeccCcc--------------e-EeecCc
Confidence 3457899999999999998 98754444 334444443 25444444321110 0 000011
Q ss_pred ---hHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHH
Q 020776 254 ---PDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGII 313 (321)
Q Consensus 254 ---~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~ 313 (321)
....+++++.|+|..+|+ +++.|++|+-+....|-+++++...-+.
T Consensus 98 kee~~s~~ELa~kf~vrstPt--------------fvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 98 KEEKMSTEELAQKFAVRSTPT--------------FVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred eeeeecHHHHHHHhccccCce--------------EEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 123468899999999988 9999999999999999999988776554
No 158
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.16 E-value=0.0045 Score=54.59 Aligned_cols=111 Identities=14% Similarity=0.078 Sum_probs=64.5
Q ss_pred eeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCC-------------HHHHHHHH
Q 020776 174 VTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDT-------------VEQVREYV 240 (321)
Q Consensus 174 vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt-------------~e~l~~~~ 240 (321)
+.+..-.++.+|+.|....||+ |....+.|.+ . .. +..+.++.+.+....++ .+.+.++.
T Consensus 70 i~~g~~~~~~~i~~f~D~~Cp~-C~~~~~~l~~----~-~~-~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~ 142 (197)
T cd03020 70 IVYGKGNGKRVVYVFTDPDCPY-CRKLEKELKP----N-AD-GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAM 142 (197)
T ss_pred eEEcCCCCCEEEEEEECCCCcc-HHHHHHHHhh----c-cC-ceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHH
Confidence 3333334789999999999998 9999988877 1 12 45666666665431121 12222222
Q ss_pred HHhCC--CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 241 KEFHP--KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 241 ~~~~~--~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
..... .........+...++++.+|+..+|+ ++ -++|+++ .|..+.+++.+
T Consensus 143 ~~~~~~~~~~~~~~~i~~~~~l~~~~gi~gtPt---------------ii-~~~G~~~---~G~~~~~~l~~ 195 (197)
T cd03020 143 SGGKVPPPAASCDNPVAANLALGRQLGVNGTPT---------------IV-LADGRVV---PGAPPAAQLEA 195 (197)
T ss_pred hCCCCCCCccccCchHHHHHHHHHHcCCCcccE---------------EE-ECCCeEe---cCCCCHHHHHh
Confidence 22211 11111223556678889999999985 33 4568764 35555555443
No 159
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=97.11 E-value=0.0047 Score=52.65 Aligned_cols=125 Identities=12% Similarity=0.023 Sum_probs=74.4
Q ss_pred CeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHH-HhhhcCCcEEEEE-EeeC-CCCCCHHHHHHHHHHhC--CC
Q 020776 172 KNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDK-IKENSGIDIVPAF-ISVD-PERDTVEQVREYVKEFH--PK 246 (321)
Q Consensus 172 ~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~-~~~~~g~~v~vV~-IS~D-p~~Dt~e~l~~~~~~~~--~~ 246 (321)
+.++.+++.||+-+|...|-.-.. -...-|-+..+.+. |..+ +++..+ |+.| .---+---++..+++.. .+
T Consensus 28 ~~W~s~~l~GKVrviq~iAGr~sa-ke~N~~l~~aik~a~f~~d---~yqtttIiN~dDAi~gt~~fVrss~e~~kk~~p 103 (160)
T PF09695_consen 28 QPWNSAQLPGKVRVIQHIAGRSSA-KEMNAPLIEAIKAAKFPHD---KYQTTTIINLDDAIWGTGGFVRSSAEDSKKEFP 103 (160)
T ss_pred cccCccccCCCEEEEEEeccCCch-hHhhHHHHHHHHHcCCCcc---ceeEEEEEecccccccchHHHHHHHHHhhhhCC
Confidence 455667788999988887665542 33444555555444 3322 444333 3543 11123445566666554 34
Q ss_pred ce-eecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 247 LI-GLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 247 ~~-~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
|. ++ .|..+.+.++|++... +-+++++|++|+|++...|..+++++.. +..+++
T Consensus 104 ~s~~v---lD~~G~~~~aW~L~~~-------------~SaiiVlDK~G~V~F~k~G~Ls~~Ev~q-Vi~Ll~ 158 (160)
T PF09695_consen 104 WSQFV---LDSNGVVRKAWQLQEE-------------SSAIIVLDKQGKVQFVKEGALSPAEVQQ-VIALLK 158 (160)
T ss_pred CcEEE---EcCCCceeccccCCCC-------------CceEEEEcCCccEEEEECCCCCHHHHHH-HHHHHh
Confidence 43 33 4666667777776532 1238899999999999989998876655 334443
No 160
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=96.92 E-value=0.0042 Score=51.63 Aligned_cols=81 Identities=9% Similarity=0.129 Sum_probs=62.3
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEee
Q 020776 191 THCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMK 270 (321)
Q Consensus 191 twCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p 270 (321)
..+|. +.+..-.|.++.++|.+ .++.++-|++|. ...++..|||..+|
T Consensus 46 ~r~~E-~~D~avvleELa~e~~~---~~v~~akVDiD~----------------------------~~~LA~~fgV~siP 93 (132)
T PRK11509 46 KRTPE-VSDNPVMIGELLREFPD---YTWQVAIADLEQ----------------------------SEAIGDRFGVFRFP 93 (132)
T ss_pred CcCCc-cccHHHHHHHHHHHhcC---CceEEEEEECCC----------------------------CHHHHHHcCCccCC
Confidence 34565 77777777777777742 246666666553 25679999999999
Q ss_pred cCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHH
Q 020776 271 TAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 271 ~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~ 318 (321)
++++-++|+++....|..+.+++.+.|.+++..
T Consensus 94 ---------------TLl~FkdGk~v~~i~G~~~k~~l~~~I~~~L~~ 126 (132)
T PRK11509 94 ---------------ATLVFTGGNYRGVLNGIHPWAELINLMRGLVEP 126 (132)
T ss_pred ---------------EEEEEECCEEEEEEeCcCCHHHHHHHHHHHhcC
Confidence 577889999999999999999999999888764
No 161
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=96.83 E-value=0.0076 Score=44.07 Aligned_cols=22 Identities=23% Similarity=0.548 Sum_probs=18.1
Q ss_pred EEEEecCCCCCCcHHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAAA 207 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l 207 (321)
+..||++||++ |....+.|.++
T Consensus 2 v~ly~~~~C~~-C~~~~~~L~~~ 23 (77)
T TIGR02200 2 ITVYGTTWCGY-CAQLMRTLDKL 23 (77)
T ss_pred EEEEECCCChh-HHHHHHHHHHc
Confidence 56899999998 99987777554
No 162
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=96.82 E-value=0.0029 Score=63.63 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=45.3
Q ss_pred CeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHH
Q 020776 182 KWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIA 261 (321)
Q Consensus 182 K~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a 261 (321)
+.-||.|+++||+. |+...|..+++.+.+.+- ..-+.+-.|++- .+....+-
T Consensus 58 ~~~lVEFy~swCGh-Cr~FAPtfk~~A~dl~~W-~~vv~vaaVdCA--------------------------~~~N~~lC 109 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGH-CRAFAPTFKKFAKDLEKW-RPVVRVAAVDCA--------------------------DEENVKLC 109 (606)
T ss_pred hhHHHHHHHhhhhh-hhhcchHHHHHHHHHhcc-cceeEEEEeecc--------------------------chhhhhhH
Confidence 46789999999998 999999999999988764 222344455542 22334567
Q ss_pred HHcCceEeec
Q 020776 262 RAYRVYYMKT 271 (321)
Q Consensus 262 ~~ygv~~~p~ 271 (321)
+.|+|.+.|+
T Consensus 110 Ref~V~~~Pt 119 (606)
T KOG1731|consen 110 REFSVSGYPT 119 (606)
T ss_pred hhcCCCCCce
Confidence 7888888776
No 163
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.74 E-value=0.017 Score=49.39 Aligned_cols=44 Identities=27% Similarity=0.306 Sum_probs=34.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
.++++|+.|+...||. |....+.+.++..++..+ +.+..+.+.+
T Consensus 14 ~~~~~i~~f~D~~Cp~-C~~~~~~~~~~~~~~~~~--v~~~~~~~~~ 57 (178)
T cd03019 14 SGKPEVIEFFSYGCPH-CYNFEPILEAWVKKLPKD--VKFEKVPVVF 57 (178)
T ss_pred CCCcEEEEEECCCCcc-hhhhhHHHHHHHHhCCCC--ceEEEcCCcc
Confidence 6789999999999998 999999999999888432 3444444443
No 164
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.65 E-value=0.016 Score=53.49 Aligned_cols=119 Identities=15% Similarity=0.200 Sum_probs=65.9
Q ss_pred eeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee-CCCC-----------CCHHHHHHHHH
Q 020776 174 VTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV-DPER-----------DTVEQVREYVK 241 (321)
Q Consensus 174 vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~-Dp~~-----------Dt~e~l~~~~~ 241 (321)
+....-.+|.+|+.|.-..||+ |++..+.+.++.+.- .+.+..+.+.+ .+.. |....+..+..
T Consensus 110 i~~g~~~ak~~I~vFtDp~Cpy-C~kl~~~l~~~~~~g----~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~ 184 (251)
T PRK11657 110 ILDGKADAPRIVYVFADPNCPY-CKQFWQQARPWVDSG----KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEA 184 (251)
T ss_pred ccccCCCCCeEEEEEECCCChh-HHHHHHHHHHHhhcC----ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHH
Confidence 3333345789999999999998 999999888765421 23454443322 2210 11111122211
Q ss_pred HhCC-Cceeec-------CChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHH
Q 020776 242 EFHP-KLIGLT-------GSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 242 ~~~~-~~~~l~-------~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
.+.. ...... ..-+...++++++|+.++|+ +|+.|.+|++.... |-.+++++.+.|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPa--------------iv~~d~~G~~~~v~-G~~~~~~L~~~l 248 (251)
T PRK11657 185 SGGKLGLKPPASIPAAVRKQLADNQKLMDDLGANATPA--------------IYYMDKDGTLQQVV-GLPDPAQLAEIM 248 (251)
T ss_pred hhhccCCCccccCCHHHHHHHHHHHHHHHHcCCCCCCE--------------EEEECCCCCEEEec-CCCCHHHHHHHh
Confidence 1111 000010 01233456778889888886 88889999764433 555666665544
No 165
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.40 E-value=0.015 Score=52.01 Aligned_cols=125 Identities=14% Similarity=0.246 Sum_probs=82.1
Q ss_pred CeEEEcCCCCeeecccc-CCCeEEEE--E-----ecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHH
Q 020776 163 PFKLINHDGKNVTEKDF-LGKWTVIY--F-----GFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVE 234 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~-kGK~vLL~--F-----watwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e 234 (321)
+..+...+| +.+|+|+ .||-.||. | |.--||. |...+..+.-....+... ++.+++|+- -..+
T Consensus 54 ~Y~Fe~~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~g-CS~laD~~dGa~~HL~~~---dv~lv~VsR----APl~ 124 (247)
T COG4312 54 DYVFETENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPG-CSFLADHWDGAVAHLEHH---DVTLVAVSR----APLE 124 (247)
T ss_pred eeEeecCCc-chhHHHHhCCCceEEEEEEecCCCccCCCCc-hhhHHhhhhhhhhhHhhc---CceEEEEec----CcHH
Confidence 566667777 5788884 67654442 2 3346997 999999998888888765 688888884 4579
Q ss_pred HHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCC--CCcc---------cccceEEEEEcCCCeEEEEe
Q 020776 235 QVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEED--SDYL---------VDHSIVMYLMSPKMEFVKFF 299 (321)
Q Consensus 235 ~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~--~~y~---------v~~~~~~~LID~dG~Iv~~~ 299 (321)
++..|.+.+|..|+.++. ....+-+.|++...+..... ..|. -.++...|.-+.+|.|-..|
T Consensus 125 ~l~~~k~rmGW~f~w~Ss---~~s~Fn~Df~vsf~~~q~~~G~~~yn~~~~~~~~rd~~G~~vF~~~e~g~v~~ty 197 (247)
T COG4312 125 ELVAYKRRMGWQFPWVSS---TDSDFNRDFQVSFTEDQQAPGVVVYNFERTPPTGRDLPGISVFYSDEDGRVYHTY 197 (247)
T ss_pred HHHHHHHhcCCcceeEec---cCcccccccccccchhhccCceeEeecccCCCccccCCCeeEEEEcCCCcccccc
Confidence 999999999999888843 33334455655443322111 1111 12445566668888886665
No 166
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.0073 Score=60.42 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=34.5
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEE
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPA 222 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV 222 (321)
.+|-|||.|+++||++ |....|.+++|.++|++. .+|++.
T Consensus 383 e~KdVLvEfyAPWCgH-Ck~laP~~eeLAe~~~~~--~~vviA 422 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGH-CKALAPIYEELAEKYKDD--ENVVIA 422 (493)
T ss_pred cccceEEEEcCcccch-hhhhhhHHHHHHHHhcCC--CCcEEE
Confidence 4799999999999999 999999999999999875 245444
No 167
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.023 Score=48.25 Aligned_cols=137 Identities=14% Similarity=0.170 Sum_probs=85.4
Q ss_pred cCCCCCCCCCCCCCeE-EEcCC----CCeeecccc-CCCeEEEEEe-cCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEE
Q 020776 150 KQGPSVGKAAIGGPFK-LINHD----GKNVTEKDF-LGKWTVIYFG-FTHCPDICPDELQKLAAAVDKIKENSGIDIVPA 222 (321)
Q Consensus 150 ~~~~~vG~~aP~p~f~-l~d~~----G~~vsLsd~-kGK~vLL~Fw-atwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV 222 (321)
.....+|+..|...++ +.+.. +.+++++++ +||-++|+=. +..-|.-|...+|.+.+-.++++.+ |.+.+ +
T Consensus 6 ~a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksK-GVd~i-i 83 (171)
T KOG0541|consen 6 MAPIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSK-GVDEI-I 83 (171)
T ss_pred cccccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhc-CCcEE-E
Confidence 3456788888832244 22222 227888884 7977766432 2223331567799999999999987 66543 3
Q ss_pred EEeeCCCCCCHHHHHHHHHHhCCC--ceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe
Q 020776 223 FISVDPERDTVEQVREYVKEFHPK--LIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF 299 (321)
Q Consensus 223 ~IS~Dp~~Dt~e~l~~~~~~~~~~--~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~ 299 (321)
-||+ +++-.+++|.+.++.+ ..++ .|...++.+.+|+...-... .....+..+-++=.||++.+..
T Consensus 84 cvSV----nDpFv~~aW~k~~g~~~~V~f~---aD~~g~ftk~lgleld~~d~----~~g~RS~R~a~vvengkV~~~n 151 (171)
T KOG0541|consen 84 CVSV----NDPFVMKAWAKSLGANDHVKFV---ADPAGEFTKSLGLELDLSDK----LLGVRSRRYALVVENGKVTVVN 151 (171)
T ss_pred EEec----CcHHHHHHHHhhcCccceEEEE---ecCCCceeeeccceeeeccc----cCccccccEEEEEeCCeEEEEE
Confidence 4665 4579999999999753 4455 67777888888876542211 1122233344555689887764
No 168
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.15 E-value=0.055 Score=40.20 Aligned_cols=22 Identities=32% Similarity=0.625 Sum_probs=17.6
Q ss_pred ecCCCCCCcHHHHHHHHHHHHHH
Q 020776 189 GFTHCPDICPDELQKLAAAVDKI 211 (321)
Q Consensus 189 watwCp~vC~~elp~L~~l~~~~ 211 (321)
+.++|+. |......++++..++
T Consensus 6 ~~~~C~~-C~~~~~~~~~~~~~~ 27 (76)
T PF13192_consen 6 FSPGCPY-CPELVQLLKEAAEEL 27 (76)
T ss_dssp ECSSCTT-HHHHHHHHHHHHHHT
T ss_pred eCCCCCC-cHHHHHHHHHHHHhc
Confidence 5777998 998888888777766
No 169
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.11 E-value=0.062 Score=46.30 Aligned_cols=96 Identities=9% Similarity=0.088 Sum_probs=47.2
Q ss_pred eEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHH-HH--HHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHH
Q 020776 164 FKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQ-KL--AAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYV 240 (321)
Q Consensus 164 f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp-~L--~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~ 240 (321)
+.....+.+.+..+.-.+|+++|.+.++||.. |..+.. .+ .++.+.+.++ + |.|-+|.+ +.|+ +..+.
T Consensus 20 V~W~~w~~ea~~~Ak~e~KpIfl~ig~~~C~w-ChvM~~esf~d~eVa~~lN~~----F--I~VkvDre-e~Pd-id~~y 90 (163)
T PF03190_consen 20 VNWQPWGEEALEKAKKENKPIFLSIGYSWCHW-CHVMERESFSDPEVAEYLNRN----F--IPVKVDRE-ERPD-IDKIY 90 (163)
T ss_dssp S--B-SSHHHHHHHHHHT--EEEEEE-TT-HH-HHHHHHHTTT-HHHHHHHHHH-------EEEEEETT-T-HH-HHHHH
T ss_pred CCcccCCHHHHHHHHhcCCcEEEEEEecCCcc-hhhhcccCcCCHHHHHHHhCC----E--EEEEeccc-cCcc-HHHHH
Confidence 44444444555556667999999999999998 997653 22 2234444333 4 45556643 2233 32222
Q ss_pred HHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEE
Q 020776 241 KEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKF 298 (321)
Q Consensus 241 ~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~ 298 (321)
..+ .....|..+.|. +++++|+|+.++.
T Consensus 91 ~~~----------------~~~~~~~gGwPl--------------~vfltPdg~p~~~ 118 (163)
T PF03190_consen 91 MNA----------------VQAMSGSGGWPL--------------TVFLTPDGKPFFG 118 (163)
T ss_dssp HHH----------------HHHHHS---SSE--------------EEEE-TTS-EEEE
T ss_pred HHH----------------HHHhcCCCCCCc--------------eEEECCCCCeeee
Confidence 221 011225556666 8999999999876
No 170
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=95.98 E-value=0.059 Score=43.86 Aligned_cols=107 Identities=19% Similarity=0.168 Sum_probs=67.4
Q ss_pred ccccCCCe-EEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCCh
Q 020776 176 EKDFLGKW-TVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSP 254 (321)
Q Consensus 176 Lsd~kGK~-vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~ 254 (321)
|+++++|- +||.|-.+--.+.-..++..|++-...+.++ ++.++.+. ++..... .-..+.
T Consensus 3 L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR---di~v~~i~-~~~~~~~---------------~~~~~~ 63 (118)
T PF13778_consen 3 LDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDER---DIVVIVIT-GDGARSP---------------GKPLSP 63 (118)
T ss_pred hhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccC---ceEEEEEe-CCccccc---------------cCcCCH
Confidence 56666643 4555543433333556667777766667766 67766664 3221110 011235
Q ss_pred HHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 255 DEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 255 d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
.....+.+.|++... ...++||++||.+..++....+++++.+.|..
T Consensus 64 ~~~~~lr~~l~~~~~-------------~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 64 EDIQALRKRLRIPPG-------------GFTVVLIGKDGGVKLRWPEPIDPEELFDTIDA 110 (118)
T ss_pred HHHHHHHHHhCCCCC-------------ceEEEEEeCCCcEEEecCCCCCHHHHHHHHhC
Confidence 667788888887622 23489999999999999899999888877653
No 171
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=95.79 E-value=0.03 Score=41.67 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=19.8
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAV 208 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~ 208 (321)
++.|+.+|||+ |....+.|.++.
T Consensus 1 V~~f~~~~Cp~-C~~~~~~L~~~~ 23 (84)
T TIGR02180 1 VVVFSKSYCPY-CKKAKEILAKLN 23 (84)
T ss_pred CEEEECCCChh-HHHHHHHHHHcC
Confidence 46789999998 999998888874
No 172
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=95.23 E-value=0.13 Score=41.12 Aligned_cols=87 Identities=9% Similarity=0.003 Sum_probs=57.4
Q ss_pred HHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCC----------
Q 020776 204 LAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAE---------- 273 (321)
Q Consensus 204 L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~---------- 273 (321)
|.+...++++. | +.+|.|++ ++++.+++|++..+.+++++ .|+..++.+++|+...-...
T Consensus 2 L~~~~~~l~~~-g--v~lv~I~~----g~~~~~~~f~~~~~~p~~ly---~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~ 71 (115)
T PF13911_consen 2 LSRRKPELEAA-G--VKLVVIGC----GSPEGIEKFCELTGFPFPLY---VDPERKLYKALGLKRGLKWSLLPPALWSGL 71 (115)
T ss_pred hhHhHHHHHHc-C--CeEEEEEc----CCHHHHHHHHhccCCCCcEE---EeCcHHHHHHhCCccccccCCCchHHHHHH
Confidence 45566777665 4 55555664 34666999999999999977 67778888888876521110
Q ss_pred --------C---CCCc---ccccceEEEEEcCCCeEEEEeC
Q 020776 274 --------E---DSDY---LVDHSIVMYLMSPKMEFVKFFG 300 (321)
Q Consensus 274 --------~---~~~y---~v~~~~~~~LID~dG~Iv~~~~ 300 (321)
. ..++ .......+||+|++|+|++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr 112 (115)
T PF13911_consen 72 SNIVQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHR 112 (115)
T ss_pred HHHHHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEe
Confidence 0 0001 1222357899999999998763
No 173
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.089 Score=51.33 Aligned_cols=91 Identities=15% Similarity=0.161 Sum_probs=59.8
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
....|+.|++.||++ |+...|...++...++. +..+.+..+..+ ....+
T Consensus 162 ~~~~lv~f~aPwc~~-ck~l~~~~~~~a~~~~~--~~~v~~~~~d~~----------------------------~~~~~ 210 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGH-CKKLAPEWEKLAKLLKS--KENVELGKIDAT----------------------------VHKSL 210 (383)
T ss_pred CcceEEEEeccccHH-hhhcChHHHHHHHHhcc--CcceEEEeeccc----------------------------hHHHH
Confidence 456788999999998 99999999999998864 235665544421 22344
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHH
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L 316 (321)
...++|...|+ +.++-++.....++.+..+.+.+...+.+..
T Consensus 211 ~~~~~v~~~Pt--------------~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~ 252 (383)
T KOG0191|consen 211 ASRLEVRGYPT--------------LKLFPPGEEDIYYYSGLRDSDSIVSFVEKKE 252 (383)
T ss_pred hhhhcccCCce--------------EEEecCCCcccccccccccHHHHHHHHHhhc
Confidence 56677777775 4444444442455556667776666665543
No 174
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=94.79 E-value=0.05 Score=50.96 Aligned_cols=84 Identities=12% Similarity=0.167 Sum_probs=55.4
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
+..-+|.|+++||.. |.+.-|...++--++++- |..|.+=- +| ...-..+
T Consensus 43 ddiW~VdFYAPWC~H-CKkLePiWdeVG~elkdi-g~PikVGK--lD--------------------------aT~f~ai 92 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAH-CKKLEPIWDEVGHELKDI-GLPIKVGK--LD--------------------------ATRFPAI 92 (468)
T ss_pred CCeEEEEeechhhhh-cccccchhHHhCcchhhc-CCceeecc--cc--------------------------cccchhh
Confidence 357789999999998 999888888887777654 44444321 11 1122456
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
+..|||.+.|+ +.+-++|..+.+. |....+.+.+
T Consensus 93 AnefgiqGYPT---------------Ik~~kgd~a~dYR-G~R~Kd~iie 126 (468)
T KOG4277|consen 93 ANEFGIQGYPT---------------IKFFKGDHAIDYR-GGREKDAIIE 126 (468)
T ss_pred HhhhccCCCce---------------EEEecCCeeeecC-CCccHHHHHH
Confidence 88999999985 4555666665544 5555555544
No 175
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=94.70 E-value=0.044 Score=44.80 Aligned_cols=43 Identities=26% Similarity=0.388 Sum_probs=30.6
Q ss_pred cCCCeEEEEEecC-------CCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 179 FLGKWTVIYFGFT-------HCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 179 ~kGK~vLL~Fwat-------wCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
-.|++++|.|.++ |||+ |....|.+++......+ +..+|.+.+
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPD-C~~aep~v~~~f~~~~~----~~~lv~v~V 66 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPD-CVAAEPVVEKAFKKAPE----NARLVYVEV 66 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHH-HHHHHHHHHHHHHH-ST----TEEEEEEE-
T ss_pred cCCCeEEEEEEccCCCCCCcccHH-HHHHHHHHHHHHHhCCC----CceEEEEEc
Confidence 3568888888755 9998 99999999998877543 455565554
No 176
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=94.48 E-value=0.22 Score=51.03 Aligned_cols=79 Identities=11% Similarity=0.172 Sum_probs=50.2
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~ 260 (321)
++..+-.|..++||. |+.....++++..+.. +....++ ... ...++
T Consensus 476 ~~~~i~v~~~~~C~~-Cp~~~~~~~~~~~~~~---~i~~~~i--~~~----------------------------~~~~~ 521 (555)
T TIGR03143 476 KPVNIKIGVSLSCTL-CPDVVLAAQRIASLNP---NVEAEMI--DVS----------------------------HFPDL 521 (555)
T ss_pred CCeEEEEEECCCCCC-cHHHHHHHHHHHHhCC---CceEEEE--ECc----------------------------ccHHH
Confidence 344466778999998 9988888877766542 2333333 211 12456
Q ss_pred HHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHH
Q 020776 261 ARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 261 a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
+++|+|..+|+ ++|| |++++. |..+.+++.+.|
T Consensus 522 ~~~~~v~~vP~---------------~~i~--~~~~~~--G~~~~~~~~~~~ 554 (555)
T TIGR03143 522 KDEYGIMSVPA---------------IVVD--DQQVYF--GKKTIEEMLELI 554 (555)
T ss_pred HHhCCceecCE---------------EEEC--CEEEEe--eCCCHHHHHHhh
Confidence 88999999995 5665 555543 555766665543
No 177
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=93.86 E-value=0.08 Score=39.66 Aligned_cols=82 Identities=16% Similarity=0.036 Sum_probs=45.0
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC--CCHHHHHHHHHHh--CCCceeecCChHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER--DTVEQVREYVKEF--HPKLIGLTGSPDEIRNI 260 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~--Dt~e~l~~~~~~~--~~~~~~l~~~~d~~~~~ 260 (321)
|..|+...||. |....+.+.++...... +..+..+.+.+.+.. .+....+...... +..+.+.. .-.....
T Consensus 1 i~~f~d~~Cp~-C~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~ 75 (98)
T cd02972 1 IVEFFDPLCPY-CYLFEPELEKLLYADDG--GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHE--ALADTAL 75 (98)
T ss_pred CeEEECCCCHh-HHhhhHHHHHHHhhcCC--cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHH--HHHHHHH
Confidence 46788999998 99999999998744432 234444444444321 1222222222221 11111110 0144567
Q ss_pred HHHcCceEeec
Q 020776 261 ARAYRVYYMKT 271 (321)
Q Consensus 261 a~~ygv~~~p~ 271 (321)
+..+|+.++|+
T Consensus 76 ~~~~g~~g~Pt 86 (98)
T cd02972 76 ARALGVTGTPT 86 (98)
T ss_pred HHHcCCCCCCE
Confidence 78899988884
No 178
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=93.84 E-value=0.36 Score=34.20 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=16.0
Q ss_pred EEEEecCCCCCCcHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAA 206 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~ 206 (321)
++.|..+||++ |......|.+
T Consensus 2 v~l~~~~~c~~-c~~~~~~l~~ 22 (73)
T cd02976 2 VTVYTKPDCPY-CKATKRFLDE 22 (73)
T ss_pred EEEEeCCCChh-HHHHHHHHHH
Confidence 46788999998 9986665554
No 179
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=93.78 E-value=0.2 Score=37.77 Aligned_cols=37 Identities=19% Similarity=0.466 Sum_probs=27.5
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
+..|..+|||+ |......|+++..++. +..+. .++++
T Consensus 3 v~iy~~~~C~~-C~~a~~~L~~l~~~~~---~i~~~--~idi~ 39 (85)
T PRK11200 3 VVIFGRPGCPY-CVRAKELAEKLSEERD---DFDYR--YVDIH 39 (85)
T ss_pred EEEEeCCCChh-HHHHHHHHHhhccccc---CCcEE--EEECC
Confidence 57789999998 9999999999886652 33444 44554
No 180
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=93.63 E-value=0.42 Score=42.51 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=26.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHH---HHHHHHHhh
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKL---AAAVDKIKE 213 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L---~~l~~~~~~ 213 (321)
.|++.|+.|+.-.||+ |...-+.+ ..+.+.+.+
T Consensus 36 ~~~~~VvEffdy~Cph-C~~~~~~l~~~~~~~~~~~~ 71 (207)
T PRK10954 36 AGEPQVLEFFSFYCPH-CYQFEEVYHVSDNVKKKLPE 71 (207)
T ss_pred CCCCeEEEEeCCCCcc-HHHhcccccchHHHHHhCCC
Confidence 4688899999999998 99987765 677777754
No 181
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=93.55 E-value=0.34 Score=36.16 Aligned_cols=63 Identities=14% Similarity=0.282 Sum_probs=40.7
Q ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcC
Q 020776 186 IYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYR 265 (321)
Q Consensus 186 L~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~yg 265 (321)
+-|++..||+ |......|.++ +.+...|-|+ .+...+++|+.-.+ .-..-.-.+..|
T Consensus 5 ~lfgsn~Cpd-ca~a~eyl~rl--------~v~yd~VeIt-----~Sm~NlKrFl~lRD---------s~~~Fd~vk~~g 61 (85)
T COG4545 5 KLFGSNLCPD-CAPAVEYLERL--------NVDYDFVEIT-----ESMANLKRFLHLRD---------SRPEFDEVKSNG 61 (85)
T ss_pred eeeccccCcc-hHHHHHHHHHc--------CCCceeeehh-----hhhhhHHHHHhhhc---------cchhHHhhhhcC
Confidence 4588999998 98877777766 3455555555 45677888877664 112222356677
Q ss_pred ceEeec
Q 020776 266 VYYMKT 271 (321)
Q Consensus 266 v~~~p~ 271 (321)
-.++|.
T Consensus 62 yiGIPa 67 (85)
T COG4545 62 YIGIPA 67 (85)
T ss_pred cccceE
Confidence 777774
No 182
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=92.52 E-value=0.29 Score=40.88 Aligned_cols=51 Identities=24% Similarity=0.260 Sum_probs=38.3
Q ss_pred eeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 173 NVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 173 ~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
.+.+.+-.++++|+.|+.-.||+ |....+.+.++.+++-+. | ++.++...+
T Consensus 4 ~~~~G~~~a~~~v~~f~d~~Cp~-C~~~~~~~~~~~~~~i~~-~-~v~~~~~~~ 54 (162)
T PF13462_consen 4 DPTIGNPDAPITVTEFFDFQCPH-CAKFHEELEKLLKKYIDP-G-KVKFVFRPV 54 (162)
T ss_dssp SEEES-TTTSEEEEEEE-TTSHH-HHHHHHHHHHHHHHHTTT-T-TEEEEEEES
T ss_pred CCeecCCCCCeEEEEEECCCCHh-HHHHHHHHhhhhhhccCC-C-ceEEEEEEc
Confidence 34455667899999999999998 999999999999998333 1 566666654
No 183
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.25 E-value=0.3 Score=39.77 Aligned_cols=42 Identities=26% Similarity=0.391 Sum_probs=31.8
Q ss_pred CCCeEEEEEec--------CCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 180 LGKWTVIYFGF--------THCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 180 kGK~vLL~Fwa--------twCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
+|+.+++.|.+ +|||+ |....|.+.+..+...+ ++.+|.+-+
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPd-CV~AEPvi~~alk~ap~----~~~~v~v~V 73 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPD-CVAAEPVINEALKHAPE----DVHFVHVYV 73 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCch-HHHhhHHHHHHHHhCCC----ceEEEEEEe
Confidence 57778888864 59998 99999999998875543 466665554
No 184
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.12 E-value=0.87 Score=46.23 Aligned_cols=85 Identities=16% Similarity=0.213 Sum_probs=54.1
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHH
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDE 256 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~ 256 (321)
..+.++.-+..|...+||+ |+.....++++..... .|..-.| |. ..
T Consensus 112 ~~~~~~~~i~~fv~~~Cp~-Cp~~v~~~~~~a~~~~-----~i~~~~i--d~--------------------------~~ 157 (517)
T PRK15317 112 KALDGDFHFETYVSLSCHN-CPDVVQALNLMAVLNP-----NITHTMI--DG--------------------------AL 157 (517)
T ss_pred HhcCCCeEEEEEEcCCCCC-cHHHHHHHHHHHHhCC-----CceEEEE--Ec--------------------------hh
Confidence 4445556688999999998 9998888888766432 3443333 21 12
Q ss_pred HHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 257 IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 257 ~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
..+++.+|++.+.|. + +||. ... +.+..+.+++.+.+.+
T Consensus 158 ~~~~~~~~~v~~VP~--------------~-~i~~--~~~--~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 158 FQDEVEARNIMAVPT--------------V-FLNG--EEF--GQGRMTLEEILAKLDT 196 (517)
T ss_pred CHhHHHhcCCcccCE--------------E-EECC--cEE--EecCCCHHHHHHHHhc
Confidence 245677899999995 4 4553 333 3366666666666543
No 185
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.60 E-value=1.5 Score=39.68 Aligned_cols=46 Identities=24% Similarity=0.314 Sum_probs=36.4
Q ss_pred EcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhh
Q 020776 167 INHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKE 213 (321)
Q Consensus 167 ~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~ 213 (321)
...++..+-..+..++++++.|.-..||. |.+.++.|.+.+....+
T Consensus 70 ~~~~~~~~~~G~~~~~v~v~~f~d~~Cp~-C~~~~~~l~~~~i~~~~ 115 (244)
T COG1651 70 LTPDGKDVVLGNPYAPVTVVEFFDYTCPY-CKEAFPELKKKYIDDGK 115 (244)
T ss_pred ecCCCCcccccCCCCCceEEEEecCcCcc-HHHHHHHHHHHhhhcCC
Confidence 34556666666666799999999999998 99999999997666653
No 186
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=91.38 E-value=0.41 Score=33.45 Aligned_cols=20 Identities=25% Similarity=0.542 Sum_probs=15.8
Q ss_pred EEEEecCCCCCCcHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLA 205 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~ 205 (321)
++.|+..|||+ |......|+
T Consensus 1 V~vy~~~~C~~-C~~~~~~L~ 20 (60)
T PF00462_consen 1 VVVYTKPGCPY-CKKAKEFLD 20 (60)
T ss_dssp EEEEESTTSHH-HHHHHHHHH
T ss_pred cEEEEcCCCcC-HHHHHHHHH
Confidence 46788999998 988766663
No 187
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=91.36 E-value=0.5 Score=43.97 Aligned_cols=89 Identities=10% Similarity=0.067 Sum_probs=56.3
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
++-+|||.||-..++. |...-..|..|+.+|. .+.++-|..+.- .
T Consensus 145 ~~~~VVVHiY~~~~~~-C~~mn~~L~~LA~kyp-----~vKFvkI~a~~~----------------------------~- 189 (265)
T PF02114_consen 145 KSTWVVVHIYEPGFPR-CEIMNSCLECLARKYP-----EVKFVKIRASKC----------------------------P- 189 (265)
T ss_dssp TT-EEEEEEE-TTSCC-HHHHHHHHHHHHHH-T-----TSEEEEEEECGC----------------------------C-
T ss_pred CCcEEEEEEEeCCCch-HHHHHHHHHHHHHhCC-----ceEEEEEehhcc----------------------------C-
Confidence 4568999999999997 9999999999999997 356665553210 0
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC---CChhHHHHHHHHHHHH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN---NDVNSLADGIIKEIKQ 318 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~---~~~~~l~~~l~~~L~~ 318 (321)
+...|.....| ++|+-++|.++..+.+. ...+-..++|+..|.+
T Consensus 190 ~~~~f~~~~LP---------------tllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~ 236 (265)
T PF02114_consen 190 ASENFPDKNLP---------------TLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIE 236 (265)
T ss_dssp TTTTS-TTC-S---------------EEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHT
T ss_pred cccCCcccCCC---------------EEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHH
Confidence 12345566666 57888899999886442 2223345566666654
No 188
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.37 E-value=0.22 Score=44.78 Aligned_cols=31 Identities=16% Similarity=-0.007 Sum_probs=26.7
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKI 211 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~ 211 (321)
+++.++++||+.||.. |...-..+..+.+.+
T Consensus 16 ~~~~~~~~f~a~wa~~-~~q~~~v~~~~~~~~ 46 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVV-QKQMDQVFDHLAEYF 46 (227)
T ss_pred ccchhhhhhhhhhhhh-hhhHHHHHHHHHHhh
Confidence 7889999999999997 998777777777766
No 189
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=90.28 E-value=7.2 Score=38.93 Aligned_cols=131 Identities=9% Similarity=0.004 Sum_probs=75.5
Q ss_pred CeEEEcCCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCC-H--------
Q 020776 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDT-V-------- 233 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt-~-------- 233 (321)
.+.+.-.+|+.|++.+++|..=+|..-++- .. |...+...+...+++.+. +|.+|-|..|.+.+. +
T Consensus 278 rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~-e~-v~~al~~ae~~r~~L~~r---~VlvVPv~~~~~~~~~~~~~gfg~~ 352 (453)
T PLN03098 278 RLPVRLSTNRIVELVQLRDITRPVILAGTK-ES-VTLAMQKAERYRTELLKR---GVLLIPVVWGENKDPQPKKKGFGRS 352 (453)
T ss_pred cceEeccCCCEEeHHHhcCcceEEEEECCH-HH-HHHHHHHhHHHHHHHHHc---CcEEEEEecCCCCcccccccccccc
Confidence 344444568899999999965444333333 44 778888999999999877 677776666532210 0
Q ss_pred ---------------H-----HHHHHHHHhCCCceeecCChHHHHHHHH-H---cCceEeecCCCCCCcccccceEEEEE
Q 020776 234 ---------------E-----QVREYVKEFHPKLIGLTGSPDEIRNIAR-A---YRVYYMKTAEEDSDYLVDHSIVMYLM 289 (321)
Q Consensus 234 ---------------e-----~l~~~~~~~~~~~~~l~~~~d~~~~~a~-~---ygv~~~p~~~~~~~y~v~~~~~~~LI 289 (321)
+ ..+.-++ -...|....-+.++-....+ + =|+. |. .+.++.|
T Consensus 353 s~~a~~~p~~~~~~~~~~~~~~~~~~~~-~~kr~~a~pv~~~~W~~wi~~q~~~~gv~--~~-----------~~vyi~l 418 (453)
T PLN03098 353 SKAAASLPSIGDDFEKRAQSAAAKSVLK-GEKRFKAEVVSPAEWERWIRDQQESEGVT--PG-----------EDVYIIL 418 (453)
T ss_pred chhhhcCCCccchhhhhhHHHHHHHhhh-cccceEEeecchHHHHHHHHHHHHhcCCC--CC-----------CceEEEE
Confidence 0 1111111 11223333222222222221 1 1221 11 1347889
Q ss_pred cCCCeEEEEeCCCCChhHHHHHH
Q 020776 290 SPKMEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 290 D~dG~Iv~~~~~~~~~~~l~~~l 312 (321)
-.||+|+..-.|..++.++.++|
T Consensus 419 r~dGrVr~SG~G~P~W~~~v~eL 441 (453)
T PLN03098 419 RLDGRVRRSGRGMPEWQEIVKEL 441 (453)
T ss_pred eeCCeEecCCCCCCCHHHHHHhC
Confidence 99999999988889999888776
No 190
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=90.27 E-value=1.7 Score=44.05 Aligned_cols=85 Identities=15% Similarity=0.224 Sum_probs=53.9
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHH
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDE 256 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~ 256 (321)
..+.++.-+..|....||+ |+.....++++..+.. +|..-. +|. ..
T Consensus 113 ~~~~~~~~i~~f~~~~Cp~-Cp~~v~~~~~~a~~~p-----~i~~~~--id~--------------------------~~ 158 (515)
T TIGR03140 113 RRLNGPLHFETYVSLTCQN-CPDVVQALNQMALLNP-----NISHTM--IDG--------------------------AL 158 (515)
T ss_pred HhcCCCeEEEEEEeCCCCC-CHHHHHHHHHHHHhCC-----CceEEE--EEc--------------------------hh
Confidence 4455666788999999998 9988888877766532 343222 221 12
Q ss_pred HHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 257 IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 257 ~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
..+++.+|++.+.|. ++||. ..+ +.+..+.+++.+.+.+
T Consensus 159 ~~~~~~~~~v~~VP~---------------~~i~~--~~~--~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 159 FQDEVEALGIQGVPA---------------VFLNG--EEF--HNGRMDLAELLEKLEE 197 (515)
T ss_pred CHHHHHhcCCcccCE---------------EEECC--cEE--EecCCCHHHHHHHHhh
Confidence 245678899999995 44553 333 3366676666655544
No 191
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=89.87 E-value=1.1 Score=32.98 Aligned_cols=22 Identities=27% Similarity=0.517 Sum_probs=17.9
Q ss_pred EEEEecCCCCCCcHHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAAA 207 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l 207 (321)
++.|...|||+ |......|.++
T Consensus 2 v~~y~~~~Cp~-C~~~~~~l~~~ 23 (82)
T cd03419 2 VVVFSKSYCPY-CKRAKSLLKEL 23 (82)
T ss_pred EEEEEcCCCHH-HHHHHHHHHHc
Confidence 46678999998 99987777776
No 192
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=87.96 E-value=0.88 Score=31.90 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=17.5
Q ss_pred EEEEecCCCCCCcHHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAAA 207 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l 207 (321)
++.|..+|||+ |......|.+.
T Consensus 2 v~ly~~~~Cp~-C~~~~~~L~~~ 23 (72)
T cd02066 2 VVVFSKSTCPY-CKRAKRLLESL 23 (72)
T ss_pred EEEEECCCCHH-HHHHHHHHHHc
Confidence 45678999998 99887777755
No 193
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=87.78 E-value=0.31 Score=44.20 Aligned_cols=43 Identities=23% Similarity=0.512 Sum_probs=30.6
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 184 TVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 184 vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
-||.|+++|||. |..-.+.+..+..--.+ .++++-.|.|++.|
T Consensus 42 wmi~~~ap~~ps-c~~~~~~~~~~a~~s~d-L~v~va~VDvt~np 84 (248)
T KOG0913|consen 42 WMIEFGAPWCPS-CSDLIPHLENFATVSLD-LGVKVAKVDVTTNP 84 (248)
T ss_pred HHHHhcCCCCcc-ccchHHHHhccCCccCC-CceeEEEEEEEecc
Confidence 357889999997 99999999887654433 24455556666654
No 194
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=87.57 E-value=1.6 Score=32.01 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=16.5
Q ss_pred EEEEecCCCCCCcHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAA 206 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~ 206 (321)
+..|+.+|||+ |......|++
T Consensus 1 v~ly~~~~Cp~-C~~a~~~L~~ 21 (79)
T TIGR02181 1 VTIYTKPYCPY-CTRAKALLSS 21 (79)
T ss_pred CEEEecCCChh-HHHHHHHHHH
Confidence 35678999998 9987777764
No 195
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=86.80 E-value=1.3 Score=35.58 Aligned_cols=52 Identities=15% Similarity=0.165 Sum_probs=35.6
Q ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCce
Q 020776 186 IYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLI 248 (321)
Q Consensus 186 L~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~ 248 (321)
..|+.++|+. |......|++. |..+.++ .+..+.-+.++++++++..+..+.
T Consensus 3 ~iY~~~~C~~-c~ka~~~L~~~--------gi~~~~i--di~~~~~~~~el~~~~~~~~~~~~ 54 (115)
T cd03032 3 KLYTSPSCSS-CRKAKQWLEEH--------QIPFEER--NLFKQPLTKEELKEILSLTENGVE 54 (115)
T ss_pred EEEeCCCCHH-HHHHHHHHHHC--------CCceEEE--ecCCCcchHHHHHHHHHHhcCCHH
Confidence 3567899998 98876666553 4455544 444334578999999998865543
No 196
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=86.47 E-value=1.7 Score=31.39 Aligned_cols=46 Identities=24% Similarity=0.342 Sum_probs=27.8
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhC
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFH 244 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~ 244 (321)
+..|..+|||+ |......|++. +..+.. ++++. +++...++.+..+
T Consensus 2 i~ly~~~~Cp~-C~~ak~~L~~~--------~i~~~~--i~i~~---~~~~~~~~~~~~~ 47 (75)
T cd03418 2 VEIYTKPNCPY-CVRAKALLDKK--------GVDYEE--IDVDG---DPALREEMINRSG 47 (75)
T ss_pred EEEEeCCCChH-HHHHHHHHHHC--------CCcEEE--EECCC---CHHHHHHHHHHhC
Confidence 45778899998 99877666542 445554 45542 2445555555444
No 197
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=85.83 E-value=2.3 Score=32.22 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=19.0
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVD 209 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~ 209 (321)
++.|..+|||+ |......|.++..
T Consensus 2 V~vys~~~Cp~-C~~ak~~L~~~~~ 25 (86)
T TIGR02183 2 VVIFGRPGCPY-CVRAKQLAEKLAI 25 (86)
T ss_pred EEEEeCCCCcc-HHHHHHHHHHhCc
Confidence 56778999998 9998887777643
No 198
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=85.74 E-value=1.1 Score=35.17 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=34.4
Q ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCC
Q 020776 186 IYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPK 246 (321)
Q Consensus 186 L~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~ 246 (321)
..|..++|+. |......|++. |..+..+-|. .+..+.+++.++....+..
T Consensus 2 ~iY~~~~C~~-c~ka~~~L~~~--------~i~~~~idi~--~~~~~~~~l~~~~~~~~~~ 51 (105)
T cd02977 2 TIYGNPNCST-SRKALAWLEEH--------GIEYEFIDYL--KEPPTKEELKELLAKLGLG 51 (105)
T ss_pred EEEECCCCHH-HHHHHHHHHHc--------CCCcEEEeec--cCCCCHHHHHHHHHhcCCC
Confidence 4678899998 98876666543 4556555444 3346788999988887743
No 199
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=85.69 E-value=5.3 Score=31.88 Aligned_cols=85 Identities=16% Similarity=0.126 Sum_probs=47.7
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
..++++|+=-.|.|| +....+..+++.++...++ +.+..+.+=.. -+--..
T Consensus 18 ~~~~~~iFKHSt~C~-IS~~a~~~~e~~~~~~~~~----~~~y~l~v~~~------------------------R~vSn~ 68 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCP-ISAMALREFEKFWEESPDE----IPVYYLDVIEY------------------------RPVSNA 68 (105)
T ss_dssp --SEEEEEEE-TT-H-HHHHHHHHHHHHHHHHT--------EEEEEGGGG------------------------HHHHHH
T ss_pred ccCcEEEEEeCCCCh-hhHHHHHHHHHHhhcCCcc----ceEEEEEEEeC------------------------chhHHH
Confidence 468888888899999 6888888888888777543 44444443111 233456
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEe-CCCCChhH
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF-GKNNDVNS 307 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~-~~~~~~~~ 307 (321)
++..|||.-.- |.++|| ++|++++.- -..++.+.
T Consensus 69 IAe~~~V~HeS-------------PQ~ili-~~g~~v~~aSH~~It~~~ 103 (105)
T PF11009_consen 69 IAEDFGVKHES-------------PQVILI-KNGKVVWHASHWDITAEA 103 (105)
T ss_dssp HHHHHT----S-------------SEEEEE-ETTEEEEEEEGGG-SHHH
T ss_pred HHHHhCCCcCC-------------CcEEEE-ECCEEEEECccccCCHHh
Confidence 78889987543 335555 789998863 23445444
No 200
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=85.48 E-value=1.4 Score=31.94 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=15.9
Q ss_pred EEEEecCCCCCCcHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAA 206 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~ 206 (321)
++.|..+|||. |......|++
T Consensus 3 v~ly~~~~C~~-C~ka~~~L~~ 23 (73)
T cd03027 3 VTIYSRLGCED-CTAVRLFLRE 23 (73)
T ss_pred EEEEecCCChh-HHHHHHHHHH
Confidence 34567899998 9987777765
No 201
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=85.47 E-value=4.4 Score=29.27 Aligned_cols=20 Identities=15% Similarity=0.394 Sum_probs=15.9
Q ss_pred EEEecCCCCCCcHHHHHHHHH
Q 020776 186 IYFGFTHCPDICPDELQKLAA 206 (321)
Q Consensus 186 L~FwatwCp~vC~~elp~L~~ 206 (321)
..|..++||+ |......|++
T Consensus 2 ~ly~~~~Cp~-C~~ak~~L~~ 21 (72)
T TIGR02194 2 TVYSKNNCVQ-CKMTKKALEE 21 (72)
T ss_pred EEEeCCCCHH-HHHHHHHHHH
Confidence 4677899998 9988777764
No 202
>PHA03050 glutaredoxin; Provisional
Probab=85.30 E-value=2.1 Score=34.14 Aligned_cols=22 Identities=32% Similarity=0.473 Sum_probs=16.7
Q ss_pred EEEEecCCCCCCcHHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAAA 207 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l 207 (321)
|+.|..+|||+ |......|++.
T Consensus 15 V~vys~~~CPy-C~~ak~~L~~~ 36 (108)
T PHA03050 15 VTIFVKFTCPF-CRNALDILNKF 36 (108)
T ss_pred EEEEECCCChH-HHHHHHHHHHc
Confidence 56778999998 98866666554
No 203
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=84.97 E-value=1.5 Score=36.31 Aligned_cols=52 Identities=15% Similarity=0.245 Sum_probs=35.0
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCc
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKL 247 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~ 247 (321)
+..|..++|+. |......|.+. |..+..+-|. .+..+.+++.++++..+..+
T Consensus 2 i~iY~~~~C~~-C~ka~~~L~~~--------gi~~~~idi~--~~~~~~~eL~~~l~~~~~g~ 53 (131)
T PRK01655 2 VTLFTSPSCTS-CRKAKAWLEEH--------DIPFTERNIF--SSPLTIDEIKQILRMTEDGT 53 (131)
T ss_pred EEEEeCCCChH-HHHHHHHHHHc--------CCCcEEeecc--CChhhHHHHHHHHHHhcCCH
Confidence 34677999998 99866555433 4555555443 33457899999999886544
No 204
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=84.56 E-value=1.2 Score=35.52 Aligned_cols=51 Identities=16% Similarity=0.405 Sum_probs=34.7
Q ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCc
Q 020776 186 IYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKL 247 (321)
Q Consensus 186 L~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~ 247 (321)
..|..++|+. |......|++- |..+..+-+.-| ..+.+++.++....+.++
T Consensus 2 ~iY~~~~C~~-c~ka~~~L~~~--------~i~~~~idi~~~--~~~~~el~~~~~~~~~~~ 52 (111)
T cd03036 2 KFYEYPKCST-CRKAKKWLDEH--------GVDYTAIDIVEE--PPSKEELKKWLEKSGLPL 52 (111)
T ss_pred EEEECCCCHH-HHHHHHHHHHc--------CCceEEecccCC--cccHHHHHHHHHHcCCCH
Confidence 3567899998 98877666543 455555544433 457788999888877543
No 205
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=83.14 E-value=3.6 Score=32.05 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=18.3
Q ss_pred CCCeEEEEEec----CCCCCCcHHHHHHHHHH
Q 020776 180 LGKWTVIYFGF----THCPDICPDELQKLAAA 207 (321)
Q Consensus 180 kGK~vLL~Fwa----twCp~vC~~elp~L~~l 207 (321)
..+.|+|+-.. +|||+ |...-..|++.
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~-C~~ak~lL~~~ 40 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGF-SARAVQILKAC 40 (97)
T ss_pred ccCCEEEEEccCCCCCCCch-HHHHHHHHHHc
Confidence 44567676553 79998 98866666554
No 206
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=82.99 E-value=2.7 Score=32.86 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=15.3
Q ss_pred EEEEecCCCCCCcHHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAAA 207 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l 207 (321)
++.|.-+|||+ |...-..|.+.
T Consensus 10 Vvvysk~~Cp~-C~~ak~~L~~~ 31 (99)
T TIGR02189 10 VVIFSRSSCCM-CHVVKRLLLTL 31 (99)
T ss_pred EEEEECCCCHH-HHHHHHHHHHc
Confidence 45567899998 98765555443
No 207
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=82.72 E-value=7.2 Score=40.00 Aligned_cols=31 Identities=10% Similarity=-0.051 Sum_probs=22.7
Q ss_pred cccCCCeEEEEEecCCCCCCcHHHHHHHHHHH
Q 020776 177 KDFLGKWTVIYFGFTHCPDICPDELQKLAAAV 208 (321)
Q Consensus 177 sd~kGK~vLL~FwatwCp~vC~~elp~L~~l~ 208 (321)
.++++.++|+.|+...|.. |.+....|+++.
T Consensus 362 ~~l~~~v~l~~~~~~~~~~-~~e~~~~l~e~~ 392 (555)
T TIGR03143 362 GRLENPVTLLLFLDGSNEK-SAELQSFLGEFA 392 (555)
T ss_pred HhcCCCEEEEEEECCCchh-hHHHHHHHHHHH
Confidence 4567778888999888986 877666555554
No 208
>PRK12559 transcriptional regulator Spx; Provisional
Probab=81.97 E-value=2.8 Score=34.70 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=35.4
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCc
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKL 247 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~ 247 (321)
+..|..++|+. |+.....|++- |..+..+-+.-| .-+.++++.+++..+..+
T Consensus 2 i~iY~~~~C~~-crkA~~~L~~~--------gi~~~~~di~~~--~~s~~el~~~l~~~~~g~ 53 (131)
T PRK12559 2 VVLYTTASCAS-CRKAKAWLEEN--------QIDYTEKNIVSN--SMTVDELKSILRLTEEGA 53 (131)
T ss_pred EEEEeCCCChH-HHHHHHHHHHc--------CCCeEEEEeeCC--cCCHHHHHHHHHHcCCCH
Confidence 45677999998 99866555433 555655544444 467899999999865443
No 209
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=81.86 E-value=5.6 Score=36.68 Aligned_cols=33 Identities=33% Similarity=0.552 Sum_probs=29.4
Q ss_pred cCCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHh
Q 020776 179 FLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIK 212 (321)
Q Consensus 179 ~kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~ 212 (321)
-.||+.+++..+-|||. |..+.-.|--...+|+
T Consensus 56 ~~Gk~~v~~igw~gCP~-~A~~sW~L~~ALsrfG 88 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPY-CAAESWALYIALSRFG 88 (249)
T ss_pred CCCeeEEEEEecccCcc-chhhHHHHHHHHHhcC
Confidence 36999999999999996 9999888888888886
No 210
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.70 E-value=5.4 Score=35.15 Aligned_cols=54 Identities=20% Similarity=0.365 Sum_probs=38.9
Q ss_pred EcCCCCeeecccc-C-CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEE
Q 020776 167 INHDGKNVTEKDF-L-GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPA 222 (321)
Q Consensus 167 ~d~~G~~vsLsd~-k-GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV 222 (321)
.+..|+.|.+.++ + .+.||...--..|-- |+.+...|.++.+-+++. |+...+|
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvl-CR~~aadLa~l~~~ld~~-Gv~Li~v 90 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVL-CREEAADLASLKDLLDEL-GVVLIAV 90 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEE-eHHHHHHHHHHHHHHHHh-CCEEEEE
Confidence 6788999999886 3 345555666889995 999999999995555444 5444333
No 211
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=80.50 E-value=4.7 Score=29.81 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=18.0
Q ss_pred CeEEEEEecCCCCCCcHHHHHHHHH
Q 020776 182 KWTVIYFGFTHCPDICPDELQKLAA 206 (321)
Q Consensus 182 K~vLL~FwatwCp~vC~~elp~L~~ 206 (321)
+.-|+.|..+|||. |...-..|.+
T Consensus 7 ~~~V~ly~~~~Cp~-C~~ak~~L~~ 30 (79)
T TIGR02190 7 PESVVVFTKPGCPF-CAKAKATLKE 30 (79)
T ss_pred CCCEEEEECCCCHh-HHHHHHHHHH
Confidence 34456778999998 9987777753
No 212
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=80.44 E-value=11 Score=36.29 Aligned_cols=45 Identities=11% Similarity=0.201 Sum_probs=30.9
Q ss_pred HHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 257 IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 257 ~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
...+++++|+.-..+ +|+ -++|+++.+. |..+++.+.+.|..+++
T Consensus 101 d~klAKKLgv~E~~S--------------iyV-fkd~~~IEyd-G~~saDtLVeFl~dl~e 145 (383)
T PF01216_consen 101 DAKLAKKLGVEEEGS--------------IYV-FKDGEVIEYD-GERSADTLVEFLLDLLE 145 (383)
T ss_dssp THHHHHHHT--STTE--------------EEE-EETTEEEEE--S--SHHHHHHHHHHHHS
T ss_pred HHHHHHhcCccccCc--------------EEE-EECCcEEEec-CccCHHHHHHHHHHhcc
Confidence 367889999876443 554 5889998877 88999999999888774
No 213
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=80.31 E-value=1.5 Score=35.36 Aligned_cols=51 Identities=18% Similarity=0.345 Sum_probs=35.3
Q ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCc
Q 020776 186 IYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKL 247 (321)
Q Consensus 186 L~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~ 247 (321)
..|+.++|+. |......|++- |..+.++ ++..+..+.+++.++++..+..+
T Consensus 2 ~iY~~~~C~~-c~ka~~~L~~~--------~i~~~~i--di~~~~~~~~el~~l~~~~~~~~ 52 (117)
T TIGR01617 2 KVYGSPNCTT-CKKARRWLEAN--------GIEYQFI--DIGEDGPTREELLDILSLLEDGI 52 (117)
T ss_pred EEEeCCCCHH-HHHHHHHHHHc--------CCceEEE--ecCCChhhHHHHHHHHHHcCCCH
Confidence 3568899998 99877766652 4455544 54444467888999999888544
No 214
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=80.01 E-value=5.1 Score=30.54 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=17.6
Q ss_pred CCCeEEEEEec----CCCCCCcHHHHHHHHHH
Q 020776 180 LGKWTVIYFGF----THCPDICPDELQKLAAA 207 (321)
Q Consensus 180 kGK~vLL~Fwa----twCp~vC~~elp~L~~l 207 (321)
+.++|+|+--. +|||+ |......|.+.
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~-C~~ak~~L~~~ 36 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGF-SRKVVQILNQL 36 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcH-HHHHHHHHHHc
Confidence 45666666433 69998 98866666554
No 215
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=78.68 E-value=5.1 Score=31.70 Aligned_cols=48 Identities=13% Similarity=0.209 Sum_probs=34.6
Q ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhC
Q 020776 186 IYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFH 244 (321)
Q Consensus 186 L~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~ 244 (321)
..|..++|+. |+.....|.+- |..+.++-+.-+| -+.++++++++..|
T Consensus 2 ~iy~~~~C~~-crka~~~L~~~--------~i~~~~~di~~~p--~s~~eL~~~l~~~g 49 (105)
T cd03035 2 TLYGIKNCDT-VKKARKWLEAR--------GVAYTFHDYRKDG--LDAATLERWLAKVG 49 (105)
T ss_pred EEEeCCCCHH-HHHHHHHHHHc--------CCCeEEEecccCC--CCHHHHHHHHHHhC
Confidence 4678999998 99866655543 5566666554443 57899999999887
No 216
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=78.33 E-value=17 Score=38.07 Aligned_cols=23 Identities=17% Similarity=0.267 Sum_probs=20.0
Q ss_pred cCCCeEEEEEecCCCCCCcHHHHH
Q 020776 179 FLGKWTVIYFGFTHCPDICPDELQ 202 (321)
Q Consensus 179 ~kGK~vLL~FwatwCp~vC~~elp 202 (321)
-.+|||+|...++||-. |..+..
T Consensus 41 ~edkPIflSIGys~CHW-ChVM~~ 63 (667)
T COG1331 41 EEDKPILLSIGYSTCHW-CHVMAH 63 (667)
T ss_pred HhCCCEEEEeccccccc-hHHHhh
Confidence 36999999999999998 997653
No 217
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=75.53 E-value=22 Score=35.27 Aligned_cols=34 Identities=12% Similarity=0.031 Sum_probs=29.5
Q ss_pred eEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHH
Q 020776 284 IVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 284 ~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~ 317 (321)
|..|+|+..|+-++...|....++|...|.+.+-
T Consensus 79 Ps~ffIg~sGtpLevitg~v~adeL~~~i~Kv~~ 112 (506)
T KOG2507|consen 79 PSIFFIGFSGTPLEVITGFVTADELASSIEKVWL 112 (506)
T ss_pred cceeeecCCCceeEEeeccccHHHHHHHHHHHHH
Confidence 3499999999999999898899999988887654
No 218
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=75.30 E-value=14 Score=27.63 Aligned_cols=32 Identities=22% Similarity=0.397 Sum_probs=20.6
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEe
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFIS 225 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS 225 (321)
++.|--++||+ |...-..|.+. |...+.+-+.
T Consensus 3 v~iyt~~~CPy-C~~ak~~L~~~--------g~~~~~i~~~ 34 (80)
T COG0695 3 VTIYTKPGCPY-CKRAKRLLDRK--------GVDYEEIDVD 34 (80)
T ss_pred EEEEECCCCch-HHHHHHHHHHc--------CCCcEEEEec
Confidence 45667788998 98876666622 5556555443
No 219
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=75.13 E-value=7.9 Score=31.83 Aligned_cols=92 Identities=11% Similarity=0.081 Sum_probs=53.8
Q ss_pred CeEEEEEecC--CCCCCcHHH-HHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHH
Q 020776 182 KWTVIYFGFT--HCPDICPDE-LQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIR 258 (321)
Q Consensus 182 K~vLL~Fwat--wCp~vC~~e-lp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~ 258 (321)
++=+|.|... .|..-+..+ ...|.++.++|+.+ .+.++.+..+. ..
T Consensus 21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk---~i~Fv~vd~~~----------------------------~~ 69 (130)
T cd02983 21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKK---PWGWLWTEAGA----------------------------QL 69 (130)
T ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCC---cEEEEEEeCcc----------------------------cH
Confidence 3445555543 244334333 67777777777644 36666665431 11
Q ss_pred HHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEE-eCCCCChhHHHHHHHHHHH
Q 020776 259 NIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKF-FGKNNDVNSLADGIIKEIK 317 (321)
Q Consensus 259 ~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~-~~~~~~~~~l~~~l~~~L~ 317 (321)
.+.+.||+... ..|++++++.++. ++. +.+..+.+.+.+-+.+.++
T Consensus 70 ~~~~~fgl~~~------------~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~ 116 (130)
T cd02983 70 DLEEALNIGGF------------GYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSY 116 (130)
T ss_pred HHHHHcCCCcc------------CCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHc
Confidence 25666776431 1123888888775 555 6677888888777777664
No 220
>PRK10638 glutaredoxin 3; Provisional
Probab=74.85 E-value=7.6 Score=28.87 Aligned_cols=22 Identities=23% Similarity=0.390 Sum_probs=16.2
Q ss_pred EEEEecCCCCCCcHHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAAA 207 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l 207 (321)
+..|..+|||+ |......|++.
T Consensus 4 v~ly~~~~Cp~-C~~a~~~L~~~ 25 (83)
T PRK10638 4 VEIYTKATCPF-CHRAKALLNSK 25 (83)
T ss_pred EEEEECCCChh-HHHHHHHHHHc
Confidence 44567899998 99877766643
No 221
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=74.46 E-value=8.7 Score=27.56 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=15.8
Q ss_pred EEEEecCCCCCCcHHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLAA 206 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~ 206 (321)
++.|..+|||. |......|++
T Consensus 3 v~lys~~~Cp~-C~~ak~~L~~ 23 (72)
T cd03029 3 VSLFTKPGCPF-CARAKAALQE 23 (72)
T ss_pred EEEEECCCCHH-HHHHHHHHHH
Confidence 45667899998 9987666653
No 222
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=72.32 E-value=27 Score=29.81 Aligned_cols=126 Identities=10% Similarity=0.049 Sum_probs=63.2
Q ss_pred eeeccccCCCeEEEEEecCCCCCCcHHHHHHHHHHHH-HHhhhcCCcEEEEEEeeCCC-CCCHHHHHHHHHHhC--CCce
Q 020776 173 NVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVD-KIKENSGIDIVPAFISVDPE-RDTVEQVREYVKEFH--PKLI 248 (321)
Q Consensus 173 ~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L~~l~~-~~~~~~g~~v~vV~IS~Dp~-~Dt~e~l~~~~~~~~--~~~~ 248 (321)
++..+++-||+-+|.-.+-.-.. -.+..+-+..+.. +|... ..+..-| |+.|.. ..+---++.-+++.. .+|.
T Consensus 51 ~W~SAqL~GKvRV~~hiAGRtsa-KE~Na~lieaIk~a~fp~~-~YQTTTI-iN~DDAi~GtgmFVkssae~~Kke~pwS 127 (184)
T COG3054 51 TWNSAQLVGKVRVLQHIAGRTSA-KEKNATLIEAIKSAKFPHD-RYQTTTI-INTDDAIPGTGMFVKSSAESNKKEYPWS 127 (184)
T ss_pred ccchhhccchhhhhhhhhcccch-hhhchHHHHHHHhccCChH-HceeeEE-eccCCccccccceeecchhhccccCCce
Confidence 34556778999888776655542 2233333433321 22211 1122222 344411 112222333333332 2332
Q ss_pred -eecCChHHHHHHHH-HcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHHH
Q 020776 249 -GLTGSPDEIRNIAR-AYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 249 -~l~~~~d~~~~~a~-~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~~ 319 (321)
++ .|..+ +++ +|++..... .++++|++|++.+...|..+..++.. +..++.++
T Consensus 128 q~v---lD~~g-vak~AWqL~e~~S-------------aivVlDk~G~VkfvkeGaLt~aevQ~-Vi~ll~~l 182 (184)
T COG3054 128 QFV---LDSNG-VAKNAWQLKEESS-------------AVVVLDKDGRVKFVKEGALTQAEVQQ-VIDLLQKL 182 (184)
T ss_pred eeE---Eccch-hhhhhhccccccc-------------eEEEEcCCCcEEEEecCCccHHHHHH-HHHHHHHh
Confidence 22 34444 444 777754332 38999999999998878777655443 44444443
No 223
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=71.46 E-value=5.4 Score=36.08 Aligned_cols=34 Identities=21% Similarity=0.149 Sum_probs=30.1
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhh
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKEN 214 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~ 214 (321)
+.+.-||.|++.|.|. |....|.+.++..+|...
T Consensus 143 k~t~WlIeFfa~ws~~-Cv~~spvfaeLS~kyn~~ 176 (265)
T KOG0914|consen 143 KRTYWLIEFFACWSPK-CVRFSPVFAELSIKYNNN 176 (265)
T ss_pred CceEEEEEEEeecChh-hcccccccHHHHHHhCCC
Confidence 3456799999999998 999999999999999765
No 224
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=71.08 E-value=14 Score=31.11 Aligned_cols=29 Identities=3% Similarity=0.020 Sum_probs=15.6
Q ss_pred eEEEEEcCC-CeEEEEeCCCCChhHHHHHH
Q 020776 284 IVMYLMSPK-MEFVKFFGKNNDVNSLADGI 312 (321)
Q Consensus 284 ~~~~LID~d-G~Iv~~~~~~~~~~~l~~~l 312 (321)
|.+++++.+ ++..+...+..+.+.+.+-|
T Consensus 153 P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl 182 (184)
T PF13848_consen 153 PALVIFDSNKGKYYYLPEGEITPESIEKFL 182 (184)
T ss_dssp SEEEEEETTTSEEEE--SSCGCHHHHHHHH
T ss_pred CEEEEEECCCCcEEcCCCCCCCHHHHHHHh
Confidence 448889954 44333345566665555544
No 225
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=71.08 E-value=8.1 Score=31.94 Aligned_cols=52 Identities=12% Similarity=0.193 Sum_probs=34.5
Q ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCce
Q 020776 186 IYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLI 248 (321)
Q Consensus 186 L~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~ 248 (321)
..|..++|+. |+....-|++ + |..+.++-+.-| .-+.+++..+++..+..+.
T Consensus 3 ~iY~~~~C~~-crkA~~~L~~-------~-~i~~~~~d~~~~--~~s~~eL~~~l~~~~~~~~ 54 (132)
T PRK13344 3 KIYTISSCTS-CKKAKTWLNA-------H-QLSYKEQNLGKE--PLTKEEILAILTKTENGIE 54 (132)
T ss_pred EEEeCCCCHH-HHHHHHHHHH-------c-CCCeEEEECCCC--CCCHHHHHHHHHHhCCCHH
Confidence 4567899998 9885544433 2 555655544434 3578999999999875543
No 226
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=70.28 E-value=12 Score=30.29 Aligned_cols=67 Identities=16% Similarity=0.285 Sum_probs=45.6
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHc
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAY 264 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~y 264 (321)
+-.|+.+.|.. |+....-|++- |....++-+.-+| -+.+.+.++++..+..|..+ ....+...+++
T Consensus 3 itiy~~p~C~t-~rka~~~L~~~--------gi~~~~~~y~~~~--~s~~eL~~~l~~~g~~~~~l---i~t~~~~~r~L 68 (117)
T COG1393 3 ITIYGNPNCST-CRKALAWLEEH--------GIEYTFIDYLKTP--PSREELKKILSKLGDGVEEL---INTRGTTYREL 68 (117)
T ss_pred EEEEeCCCChH-HHHHHHHHHHc--------CCCcEEEEeecCC--CCHHHHHHHHHHcCccHHHH---HHhccchHHHc
Confidence 34578899997 88766655543 5666666555554 46799999999998766555 34445556666
Q ss_pred C
Q 020776 265 R 265 (321)
Q Consensus 265 g 265 (321)
+
T Consensus 69 ~ 69 (117)
T COG1393 69 N 69 (117)
T ss_pred C
Confidence 6
No 227
>PRK10329 glutaredoxin-like protein; Provisional
Probab=69.43 E-value=15 Score=27.40 Aligned_cols=20 Identities=10% Similarity=0.433 Sum_probs=15.2
Q ss_pred EEEEecCCCCCCcHHHHHHHH
Q 020776 185 VIYFGFTHCPDICPDELQKLA 205 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~ 205 (321)
+..|..+|||+ |......|.
T Consensus 3 v~lYt~~~Cp~-C~~ak~~L~ 22 (81)
T PRK10329 3 ITIYTRNDCVQ-CHATKRAME 22 (81)
T ss_pred EEEEeCCCCHh-HHHHHHHHH
Confidence 45678899998 988666664
No 228
>PRK10824 glutaredoxin-4; Provisional
Probab=69.30 E-value=11 Score=30.44 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=18.8
Q ss_pred CCCeEEEEEec----CCCCCCcHHHHHHHHHH
Q 020776 180 LGKWTVIYFGF----THCPDICPDELQKLAAA 207 (321)
Q Consensus 180 kGK~vLL~Fwa----twCp~vC~~elp~L~~l 207 (321)
..+.|+|+--. +|||+ |......|+++
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpy-c~~ak~lL~~~ 43 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGF-SAQAVQALSAC 43 (115)
T ss_pred hcCCEEEEECCCCCCCCCch-HHHHHHHHHHc
Confidence 44567666555 59998 99877666655
No 229
>PHA03075 glutaredoxin-like protein; Provisional
Probab=69.22 E-value=22 Score=28.91 Aligned_cols=30 Identities=30% Similarity=0.509 Sum_probs=25.7
Q ss_pred CeEEEEEecCCCCCCcHHHHHHHHHHHHHHh
Q 020776 182 KWTVIYFGFTHCPDICPDELQKLAAAVDKIK 212 (321)
Q Consensus 182 K~vLL~FwatwCp~vC~~elp~L~~l~~~~~ 212 (321)
|.+||-|.=+.|+ +|......|.++.++|.
T Consensus 2 K~tLILfGKP~C~-vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCS-VCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccH-HHHHHHHHHHHhhcccc
Confidence 6789999999999 59998888888877774
No 230
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=68.84 E-value=27 Score=27.85 Aligned_cols=43 Identities=12% Similarity=0.112 Sum_probs=21.7
Q ss_pred HHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCC-ChhHHHHHH
Q 020776 259 NIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNN-DVNSLADGI 312 (321)
Q Consensus 259 ~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~-~~~~l~~~l 312 (321)
.+.+.||+..... ..|.+.+++.++ -.+...+.. +.+.+.+-+
T Consensus 64 ~~l~~fgl~~~~~----------~~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~ 107 (111)
T cd03073 64 HELEEFGLDFSGG----------EKPVVAIRTAKG-KKYVMEEEFSDVDALEEFL 107 (111)
T ss_pred HHHHHcCCCcccC----------CCCEEEEEeCCC-CccCCCcccCCHHHHHHHH
Confidence 3566777764110 023477888776 333333444 444444433
No 231
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=67.00 E-value=1e+02 Score=29.51 Aligned_cols=51 Identities=8% Similarity=0.178 Sum_probs=31.7
Q ss_pred CeEEEcCCCCeeeccccCCCeEEEEEecC----CCCCCcHHHHHHHHHHHHHHhhh
Q 020776 163 PFKLINHDGKNVTEKDFLGKWTVIYFGFT----HCPDICPDELQKLAAAVDKIKEN 214 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~kGK~vLL~Fwat----wCp~vC~~elp~L~~l~~~~~~~ 214 (321)
-+++.|.+=+.+-....++-.+++.|-|+ .|. .|..+..+.+-+.+-+..+
T Consensus 42 VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~-lC~~~~~Ef~iva~S~r~~ 96 (331)
T KOG2603|consen 42 VIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQ-LCLQAEEEFQIVANSWRYN 96 (331)
T ss_pred eEEecCcchhhhccCCCCCeEEEEEccccCCCCcCc-hhhhHHHHHHHHHHHhhcc
Confidence 35555544444444444444455666544 588 4998888888888877654
No 232
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=66.96 E-value=73 Score=26.43 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=28.9
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhh
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKE 213 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~ 213 (321)
..|.|+|-|.-.|.|. |..+=..|.++....++
T Consensus 22 ~~rlvViRFGr~~Dp~-C~~mD~~L~~i~~~vsn 54 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPT-CMKMDELLSSIAEDVSN 54 (142)
T ss_pred cceEEEEEecCCCCch-HhhHHHHHHHHHHHHhh
Confidence 4589999999999996 99998899999888863
No 233
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=63.68 E-value=9.9 Score=32.47 Aligned_cols=41 Identities=20% Similarity=0.230 Sum_probs=32.9
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 184 TVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 184 vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
+|.+|+..-||. |-...+.|.++.+++. +.+|....+.+.+
T Consensus 1 ~i~~~~D~~Cp~-cy~~~~~l~~l~~~~~---~~~i~~~p~~l~~ 41 (193)
T PF01323_consen 1 TIEFFFDFICPW-CYLASPRLRKLRAEYP---DVEIEWRPFPLRP 41 (193)
T ss_dssp EEEEEEBTTBHH-HHHHHHHHHHHHHHHT---TCEEEEEEESSST
T ss_pred CEEEEEeCCCHH-HHHHHHHHHHHHHHhc---CCcEEEecccccc
Confidence 467888999998 9999999999999993 3567766666554
No 234
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=61.86 E-value=77 Score=27.83 Aligned_cols=60 Identities=22% Similarity=0.277 Sum_probs=37.8
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCC-CHHHHHHHHHHhCCCceeec
Q 020776 184 TVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERD-TVEQVREYVKEFHPKLIGLT 251 (321)
Q Consensus 184 vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~D-t~e~l~~~~~~~~~~~~~l~ 251 (321)
+++....+.+.- .-.+.++...+..+ +..|. .|+.|..+- ..++++.|++..++++....
T Consensus 3 vi~lvGptGvGK-----TTt~aKLAa~~~~~-~~~v~--lis~D~~R~ga~eQL~~~a~~l~vp~~~~~ 63 (196)
T PF00448_consen 3 VIALVGPTGVGK-----TTTIAKLAARLKLK-GKKVA--LISADTYRIGAVEQLKTYAEILGVPFYVAR 63 (196)
T ss_dssp EEEEEESTTSSH-----HHHHHHHHHHHHHT-T--EE--EEEESTSSTHHHHHHHHHHHHHTEEEEESS
T ss_pred EEEEECCCCCch-----HhHHHHHHHHHhhc-cccce--eecCCCCCccHHHHHHHHHHHhccccchhh
Confidence 344556666664 44466666666655 44554 557776543 57889999999998766553
No 235
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=60.95 E-value=31 Score=27.36 Aligned_cols=31 Identities=10% Similarity=-0.026 Sum_probs=16.6
Q ss_pred EEEEcCCCeEEEE-eCCCCChhHHHHHHHHHH
Q 020776 286 MYLMSPKMEFVKF-FGKNNDVNSLADGIIKEI 316 (321)
Q Consensus 286 ~~LID~dG~Iv~~-~~~~~~~~~l~~~l~~~L 316 (321)
+.+++-++.-.+. ..+..+.+.+.+-+.+.+
T Consensus 77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~ 108 (111)
T cd03072 77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLH 108 (111)
T ss_pred EEEEcchhcCcCCCCccccCHHHHHHHHHHHh
Confidence 6666665533333 334556666665555544
No 236
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=59.87 E-value=27 Score=28.96 Aligned_cols=33 Identities=15% Similarity=0.312 Sum_probs=23.5
Q ss_pred EEEcCCCeEEEEe----CCCCChhHHHHHHHHHHHHH
Q 020776 287 YLMSPKMEFVKFF----GKNNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 287 ~LID~dG~Iv~~~----~~~~~~~~l~~~l~~~L~~~ 319 (321)
+-+=+||++++.. ....+.+.+.+.|..+.+++
T Consensus 99 ~ALfKdGelvh~ieRh~IEGr~a~~Ia~~L~~af~~~ 135 (136)
T PF06491_consen 99 IALFKDGELVHFIERHHIEGRPAEEIAENLQDAFDEY 135 (136)
T ss_dssp EEEEETTEEEEEE-GGGTTTS-HHHHHHHHHHHHHHH
T ss_pred heeeeCCEEEEEeehhhcCCCCHHHHHHHHHHHHHhh
Confidence 3444899999874 33567888888888887764
No 237
>PRK10026 arsenate reductase; Provisional
Probab=59.01 E-value=22 Score=29.88 Aligned_cols=52 Identities=10% Similarity=0.231 Sum_probs=36.9
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCc
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKL 247 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~ 247 (321)
+..|+.+.|.. |++.+.-|++- |..+.++-+--+| -+.++++.+++..+..+
T Consensus 4 i~iY~~p~Cst-~RKA~~wL~~~--------gi~~~~~d~~~~p--pt~~eL~~~l~~~g~~~ 55 (141)
T PRK10026 4 ITIYHNPACGT-SRNTLEMIRNS--------GTEPTIIHYLETP--PTRDELVKLIADMGISV 55 (141)
T ss_pred EEEEeCCCCHH-HHHHHHHHHHC--------CCCcEEEeeeCCC--cCHHHHHHHHHhCCCCH
Confidence 44677899997 98877666644 5566666554444 47899999999888543
No 238
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=57.10 E-value=21 Score=31.73 Aligned_cols=55 Identities=16% Similarity=0.297 Sum_probs=35.9
Q ss_pred CeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCce
Q 020776 182 KWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLI 248 (321)
Q Consensus 182 K~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~ 248 (321)
.-.|..|.-..|+. |...+..+.. .. ..+.+..|.. ..+.+.++.|+..++++-.
T Consensus 109 ~~rlalFvkd~C~~-C~~~~~~l~a------~~--~~~Diylvgs---~~dD~~Ir~WA~~~~Idp~ 163 (200)
T TIGR03759 109 GGRLALFVKDDCVA-CDARVQRLLA------DN--APLDLYLVGS---QGDDERIRQWANRHQIDPA 163 (200)
T ss_pred CCeEEEEeCCCChH-HHHHHHHHhc------CC--CceeEEEecC---CCCHHHHHHHHHHcCCCHH
Confidence 34455666689997 9887777633 22 2444444442 2345899999999997643
No 239
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=55.87 E-value=1.1e+02 Score=32.04 Aligned_cols=147 Identities=16% Similarity=0.064 Sum_probs=74.3
Q ss_pred cCCCCCCCCCCCCCeEEEc-CCCCeeeccc-c--CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhh-----------
Q 020776 150 KQGPSVGKAAIGGPFKLIN-HDGKNVTEKD-F--LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKEN----------- 214 (321)
Q Consensus 150 ~~~~~vG~~aP~p~f~l~d-~~G~~vsLsd-~--kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~----------- 214 (321)
..+..+|...| ++.+.. .+++++.|.+ + .|++.|+.|-...- .......|..+.+.+.+.
T Consensus 460 ~~~~~~G~r~~--~~~v~~~~d~~~~~l~~~~~~~g~~~l~~f~~~~~---~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 534 (634)
T PRK08294 460 ATGFPIGKRFH--SAPVIRLADAKPVHLGHAATADGRWRIYAFADAAD---PAGPGSALDALCEFLAESPDSPLRRFTPS 534 (634)
T ss_pred ccCCCCceeCC--CCceeeccCCCchhHhhhcccCCCEEEEEEcCCCC---cchhHHHHHHHHHHHhhCccchHhhcCCC
Confidence 34566777777 777776 4777777654 3 58999998865332 223344555554444211
Q ss_pred ---cCCcEEEEEEeeCCCC-----CCHHHHHHHHHHhCC-CceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceE
Q 020776 215 ---SGIDIVPAFISVDPER-----DTVEQVREYVKEFHP-KLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIV 285 (321)
Q Consensus 215 ---~g~~v~vV~IS~Dp~~-----Dt~e~l~~~~~~~~~-~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~ 285 (321)
...-+.++.|...+.. |-|+.++.+...++. ++..+..+........+.|||.... ..
T Consensus 535 ~~~~~~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~-------------g~ 601 (634)
T PRK08294 535 GADIDAVIDVRAIFQQPHRELDLEDVPALLLPRKGRFGLTDYEKVFCADLSGADIFDLRGIDRDR-------------GA 601 (634)
T ss_pred CCCCCcEEEEEEEecCCCCccchhhCcHhhCCcccccCccchhheecCCCchhhHHHhhCCCCCc-------------ee
Confidence 0111445555543321 123333333333333 3322211110223455667764322 35
Q ss_pred EEEEcCCCeEEEEeCCCCChhHHHHHHHHH
Q 020776 286 MYLMSPKMEFVKFFGKNNDVNSLADGIIKE 315 (321)
Q Consensus 286 ~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~ 315 (321)
++||=|||.|-+.. .-.+.+.+.+.+...
T Consensus 602 ~vvvRPD~~v~~~~-~l~~~~~l~~yf~~~ 630 (634)
T PRK08294 602 VVVVRPDQYVANVL-PLDAHAELAAFFAGF 630 (634)
T ss_pred EEEECCCCceEEEe-cCccHHHHHHHHHHh
Confidence 89999999876643 233445555444443
No 240
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=55.11 E-value=1.3e+02 Score=25.61 Aligned_cols=47 Identities=13% Similarity=0.162 Sum_probs=30.8
Q ss_pred CeEEEc-CCCCeeecccc---CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHh
Q 020776 163 PFKLIN-HDGKNVTEKDF---LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIK 212 (321)
Q Consensus 163 ~f~l~d-~~G~~vsLsd~---kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~ 212 (321)
++.++. .+++++.|.+. .|+|=|+.|-...- +......|.++.+.+.
T Consensus 6 ~a~V~r~aD~~p~~L~~~~~adGrfrI~vFagd~~---~~~~~~~l~~~~~~L~ 56 (167)
T cd02979 6 SAPVVRQADALPVHLGHRLPADGRFRIYVFAGDIA---PAQQKSRLTQLCDALD 56 (167)
T ss_pred CceEEEecCCCCHhHhhhccCCCCEEEEEEcCCCC---chhHHHHHHHHHHHHc
Confidence 666655 48888888663 58999888865433 3344556666666663
No 241
>PTZ00062 glutaredoxin; Provisional
Probab=53.90 E-value=30 Score=30.91 Aligned_cols=26 Identities=8% Similarity=0.114 Sum_probs=17.1
Q ss_pred CCCeEEEEEec----CCCCCCcHHHHHHHHH
Q 020776 180 LGKWTVIYFGF----THCPDICPDELQKLAA 206 (321)
Q Consensus 180 kGK~vLL~Fwa----twCp~vC~~elp~L~~ 206 (321)
+.++|+|+--+ +|||+ |......|++
T Consensus 111 ~~~~Vvvf~Kg~~~~p~C~~-C~~~k~~L~~ 140 (204)
T PTZ00062 111 RNHKILLFMKGSKTFPFCRF-SNAVVNMLNS 140 (204)
T ss_pred hcCCEEEEEccCCCCCCChh-HHHHHHHHHH
Confidence 45677777664 58887 8776555553
No 242
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=51.97 E-value=32 Score=27.28 Aligned_cols=50 Identities=16% Similarity=0.436 Sum_probs=26.9
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHh
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEF 243 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~ 243 (321)
.++| |.|--+|||+ |.. ++++..++ +....+ +.+|...+ ..+++++..+.
T Consensus 13 ~~~V-VifSKs~C~~-c~~----~k~ll~~~----~v~~~v--vELD~~~~-g~eiq~~l~~~ 62 (104)
T KOG1752|consen 13 ENPV-VIFSKSSCPY-CHR----AKELLSDL----GVNPKV--VELDEDED-GSEIQKALKKL 62 (104)
T ss_pred cCCE-EEEECCcCch-HHH----HHHHHHhC----CCCCEE--EEccCCCC-cHHHHHHHHHh
Confidence 3444 4567799998 987 34444433 333444 45565433 34555555443
No 243
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=48.77 E-value=25 Score=27.95 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=34.2
Q ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCc
Q 020776 186 IYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKL 247 (321)
Q Consensus 186 L~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~ 247 (321)
..|..+.|.. |++.+..|++- +..++++-+.-+| -+.+++..+++..+..+
T Consensus 2 ~iy~~~~C~t-~rkA~~~L~~~--------~i~~~~~di~~~~--~t~~el~~~l~~~~~~~ 52 (112)
T cd03034 2 TIYHNPRCSK-SRNALALLEEA--------GIEPEIVEYLKTP--PTAAELRELLAKLGISP 52 (112)
T ss_pred EEEECCCCHH-HHHHHHHHHHC--------CCCeEEEecccCC--cCHHHHHHHHHHcCCCH
Confidence 3567889997 98876555533 4456655444333 47899999999988543
No 244
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=46.99 E-value=1.6e+02 Score=24.26 Aligned_cols=14 Identities=0% Similarity=0.088 Sum_probs=11.7
Q ss_pred HHHHHHcCceEeec
Q 020776 258 RNIARAYRVYYMKT 271 (321)
Q Consensus 258 ~~~a~~ygv~~~p~ 271 (321)
..+.++|+|...|.
T Consensus 61 P~lF~~f~I~~VPa 74 (130)
T TIGR02742 61 PQWFKQFDITAVPA 74 (130)
T ss_pred hHHHhhcCceEcCE
Confidence 45789999999995
No 245
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=45.57 E-value=56 Score=26.16 Aligned_cols=48 Identities=21% Similarity=0.378 Sum_probs=33.3
Q ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhC
Q 020776 186 IYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFH 244 (321)
Q Consensus 186 L~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~ 244 (321)
..|..+.|+. |++....|.+- |..+.++-+.-+| -+.++++.+++..+
T Consensus 3 ~iy~~p~C~~-crkA~~~L~~~--------gi~~~~~d~~~~p--~s~~eL~~~l~~~g 50 (113)
T cd03033 3 IFYEKPGCAN-NARQKALLEAA--------GHEVEVRDLLTEP--WTAETLRPFFGDLP 50 (113)
T ss_pred EEEECCCCHH-HHHHHHHHHHc--------CCCcEEeehhcCC--CCHHHHHHHHHHcC
Confidence 4567899997 99766544433 5566666555444 46899999999775
No 246
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=45.34 E-value=2.1e+02 Score=24.92 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=26.5
Q ss_pred cCCCeEEEEEecCCCCCC--cHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 179 FLGKWTVIYFGFTHCPDI--CPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 179 ~kGK~vLL~FwatwCp~v--C~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
++-+.|+|.+....+..- -......+.++.++++.+ ..+..++.+++=|
T Consensus 88 ~~pd~VvI~~G~ND~~~~~~~~~~~~~l~~ii~~l~~~-~P~~~Iil~~~~p 138 (214)
T cd01820 88 VNPKVVVLLIGTNNIGHTTTAEEIAEGILAIVEEIREK-LPNAKILLLGLLP 138 (214)
T ss_pred CCCCEEEEEecccccCCCCCHHHHHHHHHHHHHHHHHH-CCCCeEEEEeccC
Confidence 445667777765544320 223457778888887765 2233444445433
No 247
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=44.76 E-value=1.6e+02 Score=23.61 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=41.9
Q ss_pred EEEEEEeeCCCC-CCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCce-EeecCCCCCCcccccceEEEEEcCCCeEE
Q 020776 219 IVPAFISVDPER-DTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVY-YMKTAEEDSDYLVDHSIVMYLMSPKMEFV 296 (321)
Q Consensus 219 v~vV~IS~Dp~~-Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~-~~p~~~~~~~y~v~~~~~~~LID~dG~Iv 296 (321)
+.+|.|.-|-.. +..+.+..+++.+++++..+ + ...++.+..|.. .... +.|.|+
T Consensus 43 a~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~-~---sk~eLG~a~Gk~~~~sv--------------vaI~d~----- 99 (117)
T TIGR03677 43 AKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYV-K---KKEDLGAAAGLEVGAAS--------------AAIVDE----- 99 (117)
T ss_pred ccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEe-C---CHHHHHHHhCCCCCeEE--------------EEEEch-----
Confidence 444555555432 34577888899999886554 2 334566666653 1111 445552
Q ss_pred EEeCCCCChhHHHHHHHHHHHHHh
Q 020776 297 KFFGKNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 297 ~~~~~~~~~~~l~~~l~~~L~~~k 320 (321)
...+.+.+.+.+.+++++
T Consensus 100 ------g~a~~~~~~~~~~i~~~~ 117 (117)
T TIGR03677 100 ------GKAEELLKEIIEKVEALK 117 (117)
T ss_pred ------hhhHHHHHHHHHHHHhcC
Confidence 234566677777777654
No 248
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=41.98 E-value=99 Score=32.62 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=12.5
Q ss_pred CCCCCCCchHHHHHHHHHH-HHHHHH
Q 020776 104 GKPIRGGPISWLSFLLLAL-TGAGII 128 (321)
Q Consensus 104 ~~~~r~~p~~~l~~~ll~~-~~~~l~ 128 (321)
.++.|++..+|++++++++ +|++.+
T Consensus 317 ~~~~~~~~~~~~~~l~~~~~~g~~~~ 342 (656)
T PRK06975 317 ARRGRGSAALWFVVVVLACAAAVGGY 342 (656)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHH
Confidence 3444556666665554443 333333
No 249
>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]
Probab=41.76 E-value=94 Score=26.89 Aligned_cols=60 Identities=17% Similarity=0.118 Sum_probs=33.4
Q ss_pred ecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCC-CHHHHHHHHHHhCCCceee
Q 020776 189 GFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERD-TVEQVREYVKEFHPKLIGL 250 (321)
Q Consensus 189 watwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~D-t~e~l~~~~~~~~~~~~~l 250 (321)
--+|.+..-.+..+.--.+.+.++- ..++.+|++.-+..-| -...+.+|+++++.+...+
T Consensus 86 ~lSW~v~~fedIt~dSLslF~tleP--kidlLIvG~Gd~~~p~~v~~~V~~F~k~~ki~lEi~ 146 (196)
T KOG3363|consen 86 LLSWSVRTFEDITTDSLSLFQTLEP--KIDLLIVGCGDKKHPDKVRPSVRQFVKSHKIKLEIV 146 (196)
T ss_pred eeeccCCChhhcCcchHhHhhhcCC--CccEEEEecCCcCCchhcCHHHHHHHHHhCcceEEe
Confidence 3567765233333333344444443 3467777765322111 1256788999999888777
No 250
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=41.68 E-value=1.3e+02 Score=23.47 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=31.4
Q ss_pred cEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCc
Q 020776 218 DIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRV 266 (321)
Q Consensus 218 ~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv 266 (321)
...+|.|+-|-..++.+.+..+++.+++++..+.++. .++.+..|.
T Consensus 32 kaklViiA~D~~~~~~~~i~~~c~~~~Ip~~~~~~tk---~eLG~a~Gk 77 (99)
T PRK01018 32 KAKLVIVASNCPKDIKEDIEYYAKLSGIPVYEYEGSS---VELGTLCGK 77 (99)
T ss_pred CceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCH---HHHHHHhCC
Confidence 4566677777666778888889999998876663344 445555553
No 251
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=41.05 E-value=54 Score=28.15 Aligned_cols=41 Identities=17% Similarity=0.335 Sum_probs=28.9
Q ss_pred EEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 187 YFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 187 ~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
+|+..-||. |-...+.|.++.++++.+.+++|....+.+++
T Consensus 3 ~~~D~~cP~-cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L~~ 43 (201)
T cd03024 3 IWSDVVCPW-CYIGKRRLEKALAELGDEVDVEIEWRPFELNP 43 (201)
T ss_pred EEecCcCcc-HHHHHHHHHHHHHhCCCCCceEEEEeeeeeCC
Confidence 466778998 99999999999999853223445544444454
No 252
>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]
Probab=40.67 E-value=50 Score=30.31 Aligned_cols=26 Identities=4% Similarity=-0.143 Sum_probs=21.5
Q ss_pred EEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 285 VMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 285 ~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
.+||||..|+|++.--|..++++++.
T Consensus 250 yV~L~D~s~kIRW~g~G~aTp~Eve~ 275 (287)
T KOG4614|consen 250 YVLLLDKSGKIRWQGFGTATPEEVEQ 275 (287)
T ss_pred EEEEEccCceEEEeecCCCCHHHHHH
Confidence 48999999999999778887776554
No 253
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=39.30 E-value=3e+02 Score=25.06 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=37.8
Q ss_pred CeEEEEEecCC-CCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCc
Q 020776 182 KWTVIYFGFTH-CPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKL 247 (321)
Q Consensus 182 K~vLL~Fwatw-Cp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~ 247 (321)
++|-|.++.+- =+.--......+.++.++|+...+.++.+-.| ||. .+++..++.++.+|+.-
T Consensus 25 ~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~i--Dp~-~~~~~~~~~~~~~Gi~~ 88 (271)
T PF09822_consen 25 EPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFI--DPD-ENPSEAEEKAKEYGIQP 88 (271)
T ss_pred CCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEE--CCC-CChHHHHHHHHhcCCCc
Confidence 45555555554 22213456678888888888774436665544 453 34677777777777553
No 254
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=39.25 E-value=62 Score=25.76 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=34.1
Q ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCC
Q 020776 186 IYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPK 246 (321)
Q Consensus 186 L~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~ 246 (321)
..|..+.|.. |++....|++- |..++++-+.-+ .-+.++++.+++..+..
T Consensus 2 ~iy~~~~C~t-~rkA~~~L~~~--------~i~~~~~di~~~--p~t~~el~~~l~~~g~~ 51 (114)
T TIGR00014 2 TIYHNPRCSK-SRNTLALLEDK--------GIEPEVVKYLKN--PPTKSELEAIFAKLGLT 51 (114)
T ss_pred EEEECCCCHH-HHHHHHHHHHC--------CCCeEEEeccCC--CcCHHHHHHHHHHcCCc
Confidence 3567889997 98876666543 445655544433 35789999999988753
No 255
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=38.72 E-value=1.9e+02 Score=29.41 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=24.7
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeeccccCC-CeEEEEE
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTEKDFLG-KWTVIYF 188 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsLsd~kG-K~vLL~F 188 (321)
.+.+|..+| +..+.+.+|....+.++.| .++||.|
T Consensus 410 ~~~~G~~~p--~~~~~~~~~~~~~~d~~~~~~~~ll~~ 445 (538)
T PRK06183 410 HSPVGTLFP--QPRVELGGGDRGLLDDVLGPGFAVLGW 445 (538)
T ss_pred CCCcccCcC--CCeeEcCCCCcccchhccCCceEEEEe
Confidence 456788888 7777766665545666665 6899987
No 256
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognised by CHASE4 domains are not known at this time [].
Probab=38.22 E-value=48 Score=27.33 Aligned_cols=13 Identities=8% Similarity=0.404 Sum_probs=11.9
Q ss_pred EEEEcCCCeEEEE
Q 020776 286 MYLMSPKMEFVKF 298 (321)
Q Consensus 286 ~~LID~dG~Iv~~ 298 (321)
++++|++|++++.
T Consensus 53 ~~~~d~~g~~~~~ 65 (161)
T PF05228_consen 53 IFILDPDGRVLYS 65 (161)
T ss_pred EEEEcCCCCEEEE
Confidence 8999999999983
No 257
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=38.05 E-value=1.1e+02 Score=23.06 Aligned_cols=61 Identities=13% Similarity=0.064 Sum_probs=35.1
Q ss_pred HHHHHHc-CceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHHHh
Q 020776 258 RNIARAY-RVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 258 ~~~a~~y-gv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~~k 320 (321)
.+++..+ ++.|.|..-.+-.|.+.....+++|-+.|+|+-. |..+.++..+.+.+.++.++
T Consensus 22 ~~la~~~~~~~YePe~fpgl~~r~~~p~~t~~IF~sGki~it--Gaks~~~~~~a~~~i~~~L~ 83 (86)
T PF00352_consen 22 EELAEELENVEYEPERFPGLIYRLRNPKATVLIFSSGKIVIT--GAKSEEEAKKAIEKILPILQ 83 (86)
T ss_dssp HHHHHHSTTEEEETTTESSEEEEETTTTEEEEEETTSEEEEE--EESSHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccCcEEeeccCCeEEEeecCCcEEEEEEcCCEEEEE--ecCCHHHHHHHHHHHHHHHH
Confidence 3444443 3444443211223344445578999999999876 44566766666666655443
No 258
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=38.05 E-value=1.1e+02 Score=25.54 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=26.6
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEe
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFIS 225 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS 225 (321)
..++-++.+|...|+- |..+...|.+. +. +..+.+..+.
T Consensus 5 ~~~p~~vvlyDG~C~l-C~~~vrfLi~~-----D~-~~~i~f~~~q 43 (137)
T COG3011 5 MKKPDLVVLYDGVCPL-CDGWVRFLIRR-----DQ-GGRIRFAALQ 43 (137)
T ss_pred CCCCCEEEEECCcchh-HHHHHHHHHHh-----cc-CCcEEEEecc
Confidence 3567778888999996 99977777655 22 3356655443
No 259
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=36.77 E-value=2.5e+02 Score=25.15 Aligned_cols=73 Identities=11% Similarity=-0.026 Sum_probs=51.9
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
+..-||+.|+-..... |..+=..|..+..++- ...+|-|+ .+ +-|++
T Consensus 83 kS~kVVcHFY~~~f~R-CKimDkhLe~LAk~h~-----eTrFikvn--ae----------------~~PFl--------- 129 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFR-CKIMDKHLEILAKRHV-----ETRFIKVN--AE----------------KAPFL--------- 129 (211)
T ss_pred cCceEEEEEEcCCCcc-eehHHHHHHHHHHhcc-----cceEEEEe--cc----------------cCcee---------
Confidence 4567888999888776 9999999999988774 34555444 22 12344
Q ss_pred HHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 260 IARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 260 ~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
...++|...| ++++-++|..+.++.|
T Consensus 130 -v~kL~IkVLP---------------~v~l~k~g~~~D~iVG 155 (211)
T KOG1672|consen 130 -VTKLNIKVLP---------------TVALFKNGKTVDYVVG 155 (211)
T ss_pred -eeeeeeeEee---------------eEEEEEcCEEEEEEee
Confidence 5678899988 4666789988887654
No 260
>PRK07033 hypothetical protein; Provisional
Probab=36.50 E-value=1.9e+02 Score=28.76 Aligned_cols=36 Identities=11% Similarity=-0.020 Sum_probs=21.7
Q ss_pred ecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEe
Q 020776 189 GFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFIS 225 (321)
Q Consensus 189 watwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS 225 (321)
|.+.-..+-....+.|.++.+.++.. ...|.+++-+
T Consensus 318 F~~gsa~L~~~~~~~L~~ia~~L~~~-~~~I~V~GHT 353 (427)
T PRK07033 318 FASASTSVRDRYQPVLARVADALNQV-KGNVLVTGYS 353 (427)
T ss_pred cCCCccccCHHHHHHHHHHHHHHHhC-CCeEEEEEEe
Confidence 44333334556677788887777665 2356666665
No 261
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=36.26 E-value=51 Score=25.89 Aligned_cols=52 Identities=27% Similarity=0.426 Sum_probs=29.4
Q ss_pred EecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceee
Q 020776 188 FGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGL 250 (321)
Q Consensus 188 FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l 250 (321)
|..+.|.. |+..+..|++ . |..+++ +++-.+.-+.+++.++++..+..+.-+
T Consensus 1 Y~~~~C~t-~rka~~~L~~-------~-gi~~~~--~d~~k~p~s~~el~~~l~~~~~~~~~l 52 (110)
T PF03960_consen 1 YGNPNCST-CRKALKWLEE-------N-GIEYEF--IDYKKEPLSREELRELLSKLGNGPDDL 52 (110)
T ss_dssp EE-TT-HH-HHHHHHHHHH-------T-T--EEE--EETTTS---HHHHHHHHHHHTSSGGGG
T ss_pred CcCCCCHH-HHHHHHHHHH-------c-CCCeEe--ehhhhCCCCHHHHHHHHHHhcccHHHH
Confidence 45677886 8776665553 2 445554 455333357899999999998655444
No 262
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=36.20 E-value=76 Score=22.97 Aligned_cols=44 Identities=20% Similarity=0.313 Sum_probs=29.2
Q ss_pred CCCCeeeccccCCCeEEEEEecCCCCCCcHHHHHHH-HHHHHHHhhh
Q 020776 169 HDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKL-AAAVDKIKEN 214 (321)
Q Consensus 169 ~~G~~vsLsd~kGK~vLL~FwatwCp~vC~~elp~L-~~l~~~~~~~ 214 (321)
.+|-.+.+-++++..+.|.|-+ .|.. |....-.| .-+.+.++++
T Consensus 14 ~dGGdv~lv~v~~~~V~V~l~G-aC~g-C~~s~~Tl~~~Ie~~L~~~ 58 (68)
T PF01106_consen 14 SDGGDVELVDVDDGVVYVRLTG-ACSG-CPSSDMTLKQGIEQALREA 58 (68)
T ss_dssp HTTEEEEEEEEETTEEEEEEES-SCCS-SCCHHHHHHHHHHHHHHHH
T ss_pred hcCCcEEEEEecCCEEEEEEEe-CCCC-CCCHHHHHHHHHHHHHHHH
Confidence 4677788888887788888754 4665 77666666 3344555554
No 263
>COG3322 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=35.72 E-value=42 Score=31.75 Aligned_cols=14 Identities=14% Similarity=0.316 Sum_probs=12.6
Q ss_pred EEEEcCCCeEEEEe
Q 020776 286 MYLMSPKMEFVKFF 299 (321)
Q Consensus 286 ~~LID~dG~Iv~~~ 299 (321)
+|+||++|++++..
T Consensus 107 vf~vd~~G~~vy~~ 120 (295)
T COG3322 107 VFVVDPSGKLVYSK 120 (295)
T ss_pred EEEECCCCCEEEEe
Confidence 89999999999874
No 264
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=35.69 E-value=3.7e+02 Score=27.25 Aligned_cols=117 Identities=19% Similarity=0.227 Sum_probs=63.4
Q ss_pred CCCCCCCCCCCCeEEEcCCCCeeeccccCC-CeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC
Q 020776 152 GPSVGKAAIGGPFKLINHDGKNVTEKDFLG-KWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER 230 (321)
Q Consensus 152 ~~~vG~~aP~p~f~l~d~~G~~vsLsd~kG-K~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~ 230 (321)
.+.+|..+| +..+. .+|..+++.|+-| +++||.|... + . .....+. .... +..+.++.+..+..
T Consensus 426 ~~~pG~r~p--~~~~~-~~~~~~~l~dl~g~~f~ll~~~~~---~--~--~~~~~~~---~~~~-~~~~~~~~~~~~~~- 490 (547)
T PRK08132 426 GPVPGAPAP--DAPVR-ADGEPGWLLDLLGGGFTLLLFGDD---A--A--AAALLQA---LAAA-ALPVRVVAVVPAGA- 490 (547)
T ss_pred CCCCCCCCC--CCccc-CCCCceEHHHhcCCCEEEEEecCC---c--h--hhhhhhh---hhcc-CCceEEEEEecCcc-
Confidence 345677777 66555 4576778877654 6888877431 1 1 1111111 1111 44565555542210
Q ss_pred CCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHH
Q 020776 231 DTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLAD 310 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~ 310 (321)
. ..+...+ .|..+.+.+.|++... ..+||=|||.|-+.... ...+.+.+
T Consensus 491 -~-----------~~~~~~~---~d~~~~~~~~~~~~~~---------------~~~LvRPDg~va~~~~~-~~~~~~~~ 539 (547)
T PRK08132 491 -A-----------QAAAGVL---EDADGLAAERYDARPG---------------TVYLIRPDQHVAARWRT-PDAAAVRA 539 (547)
T ss_pred -c-----------ccCcccc---cCcccHHHHHhCCCCC---------------eEEEECCCceEEEEecC-CCHHHHHH
Confidence 0 0011112 4566777888886431 28999999999887533 35555555
Q ss_pred HHHH
Q 020776 311 GIIK 314 (321)
Q Consensus 311 ~l~~ 314 (321)
.+.+
T Consensus 540 ~l~~ 543 (547)
T PRK08132 540 ALAR 543 (547)
T ss_pred HHHH
Confidence 5544
No 265
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=35.18 E-value=88 Score=24.99 Aligned_cols=39 Identities=10% Similarity=0.061 Sum_probs=29.2
Q ss_pred hHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhH
Q 020776 254 PDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNS 307 (321)
Q Consensus 254 ~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~ 307 (321)
.+...++...||+...|. +++=++|+.+....+-.++++
T Consensus 68 ~~~e~~L~~r~gv~~~Pa---------------Lvf~R~g~~lG~i~gi~dW~d 106 (107)
T PF07449_consen 68 RAAERALAARFGVRRWPA---------------LVFFRDGRYLGAIEGIRDWAD 106 (107)
T ss_dssp HHHHHHHHHHHT-TSSSE---------------EEEEETTEEEEEEESSSTHHH
T ss_pred chhHHHHHHHhCCccCCe---------------EEEEECCEEEEEecCeecccc
Confidence 455677899999998884 666688999988877777654
No 266
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=34.50 E-value=59 Score=27.64 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=29.2
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
|.+|+...||. |-...+.|.++.+++.. +..+......+
T Consensus 3 i~~~~D~~cp~-c~~~~~~l~~l~~~~~~--~~~v~~~~~~L 41 (193)
T cd03025 3 LYYFIDPLCGW-CYGFEPLLEKLKEEYGG--GIEVELHLGGL 41 (193)
T ss_pred EEEEECCCCch-hhCchHHHHHHHHHhCC--CceEEEEeccc
Confidence 56788999998 99999999999999832 34555444444
No 267
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=34.28 E-value=2.1e+02 Score=21.97 Aligned_cols=46 Identities=7% Similarity=0.013 Sum_probs=20.9
Q ss_pred cEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCc
Q 020776 218 DIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRV 266 (321)
Q Consensus 218 ~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv 266 (321)
++.+|+.=-|.+.+..+...+.++.+.-++.+.. .....+++.|++
T Consensus 19 ~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~---~~~~~~~~~~~~ 64 (104)
T cd03069 19 DASVVGFFEDEDSKLLSEFLKAADTLRESFRFAH---TSDKQLLEKYGY 64 (104)
T ss_pred CcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEE---EChHHHHHhcCC
Confidence 4444544322221223445555555544444432 222355677776
No 268
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=34.25 E-value=1.8e+02 Score=23.08 Aligned_cols=46 Identities=11% Similarity=0.043 Sum_probs=31.5
Q ss_pred cEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCc
Q 020776 218 DIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRV 266 (321)
Q Consensus 218 ~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv 266 (321)
.+..|.|.-|-...+.+.+..+++.+++++..+.++. .++.++.|.
T Consensus 41 kaklViiA~D~~~~~kkki~~~~~~~~Vpv~~~~~t~---~eLG~A~Gk 86 (108)
T PTZ00106 41 KAKLVIISNNCPPIRRSEIEYYAMLSKTGVHHYAGNN---NDLGTACGR 86 (108)
T ss_pred CeeEEEEeCCCCHHHHHHHHHHHhhcCCCEEEeCCCH---HHHHHHhCC
Confidence 4666777877666678888888999988876553444 344555553
No 269
>PRK10853 putative reductase; Provisional
Probab=34.17 E-value=76 Score=25.59 Aligned_cols=50 Identities=24% Similarity=0.301 Sum_probs=33.3
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCC
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHP 245 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~ 245 (321)
+..|..+.|.. |++.+.-|++- |..+.++-+--+| -+.++++.++++.|.
T Consensus 2 i~iy~~~~C~t-~rkA~~~L~~~--------~i~~~~~d~~k~p--~s~~eL~~~l~~~g~ 51 (118)
T PRK10853 2 VTLYGIKNCDT-IKKARRWLEAQ--------GIDYRFHDYRVDG--LDSELLQGFIDELGW 51 (118)
T ss_pred EEEEcCCCCHH-HHHHHHHHHHc--------CCCcEEeehccCC--cCHHHHHHHHHHcCH
Confidence 34667899997 98876665543 4555555333333 468999999988763
No 270
>PRK06683 hypothetical protein; Provisional
Probab=34.02 E-value=1.3e+02 Score=22.59 Aligned_cols=47 Identities=6% Similarity=0.111 Sum_probs=32.3
Q ss_pred cEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceE
Q 020776 218 DIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYY 268 (321)
Q Consensus 218 ~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~ 268 (321)
+...|.|.-|-+..+.+.+.++++.+++++..+. ...++.+..|+..
T Consensus 27 kaklViiA~Da~~~~~~~i~~~~~~~~Vpv~~~~----t~~eLG~A~G~~~ 73 (82)
T PRK06683 27 IVKEVVIAEDADMRLTHVIIRTALQHNIPITKVE----SVRKLGKVAGIQV 73 (82)
T ss_pred CeeEEEEECCCCHHHHHHHHHHHHhcCCCEEEEC----CHHHHHHHhCCcc
Confidence 4666677777665677778888888888876662 3455666666654
No 271
>PRK08564 5'-methylthioadenosine phosphorylase II; Reviewed
Probab=32.68 E-value=4.1e+02 Score=24.66 Aligned_cols=68 Identities=22% Similarity=0.379 Sum_probs=43.4
Q ss_pred cHHHHHHHHHHHHHHhhhcCCcEE--EEEE-eeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEee
Q 020776 197 CPDELQKLAAAVDKIKENSGIDIV--PAFI-SVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMK 270 (321)
Q Consensus 197 C~~elp~L~~l~~~~~~~~g~~v~--vV~I-S~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p 270 (321)
|+.....+.+..++. +.++. .+.+ .--|..+|+.+++.|..-+|.+....+ .-..-.+++..|+.+.-
T Consensus 138 ~~~Lr~~l~~aA~~~----g~~~~~~GvY~~~~GP~fET~AEir~~r~~~GaD~VGMS--~vpEvilAre~g~~~~~ 208 (267)
T PRK08564 138 CPELRKIIIETAKEL----GIRTHEKGTYICIEGPRFSTRAESRMWREVFKADIIGMT--LVPEVNLACELGMCYAT 208 (267)
T ss_pred CHHHHHHHHHHHHHc----CCceecceEEEEeeCCCcCCHHHHHHHHHccCCCEeccC--ccHHHHHHHHcCCceEE
Confidence 777666666666654 33333 2333 345778999999888755476665553 33445678999988765
No 272
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=32.57 E-value=1.3e+02 Score=24.58 Aligned_cols=50 Identities=20% Similarity=0.302 Sum_probs=33.6
Q ss_pred EEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhC
Q 020776 184 TVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFH 244 (321)
Q Consensus 184 vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~ 244 (321)
++..|..+.|.. |++...-|++- |..+.++-+--+ .-+.++++.+++..+
T Consensus 2 ~i~iY~~p~Cst-~RKA~~~L~~~--------gi~~~~~d~~~~--p~t~~eL~~~l~~~g 51 (126)
T TIGR01616 2 TIIFYEKPGCAN-NARQKAALKAS--------GHDVEVQDILKE--PWHADTLRPYFGNKP 51 (126)
T ss_pred eEEEEeCCCCHH-HHHHHHHHHHC--------CCCcEEEeccCC--CcCHHHHHHHHHHcC
Confidence 345677899997 98866665543 556665544333 347899999999865
No 273
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=32.03 E-value=1.7e+02 Score=22.09 Aligned_cols=46 Identities=15% Similarity=0.390 Sum_probs=32.8
Q ss_pred cEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCce
Q 020776 218 DIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVY 267 (321)
Q Consensus 218 ~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~ 267 (321)
+...|.|.-|...++.+.+..+++.+++++... ....++.+..|+.
T Consensus 24 kakLViiA~Da~~~~~k~i~~~c~~~~Vpv~~~----~t~~eLG~A~G~~ 69 (82)
T PRK13601 24 NVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYI----DTMKELGVMCGID 69 (82)
T ss_pred CeeEEEEeCCCCHHHHHHHHHHHHhCCCCEEEe----CCHHHHHHHHCCc
Confidence 466677787776677888888899999888433 2335667777764
No 274
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=31.29 E-value=2.2e+02 Score=26.60 Aligned_cols=42 Identities=14% Similarity=0.298 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHh
Q 020776 198 PDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEF 243 (321)
Q Consensus 198 ~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~ 243 (321)
..+-..|.+-.+++.++.+.+|.||.|..-. .+.+++|+.+.
T Consensus 45 ~~e~~~Leq~l~~L~~kt~~QiaVv~vpSt~----g~~IE~ya~rl 86 (271)
T COG1512 45 AAERGALEQQLADLEQKTGAQIAVVTVPSTG----GETIEQYATRL 86 (271)
T ss_pred hhhHHHHHHHHHHHHhccCCeEEEEEecCCC----CCCHHHHHHHH
Confidence 3456778888888877767778777664321 24556665555
No 275
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=30.78 E-value=51 Score=27.98 Aligned_cols=21 Identities=19% Similarity=0.167 Sum_probs=12.1
Q ss_pred CCCCchHHHHHHHHHHHHHHH
Q 020776 107 IRGGPISWLSFLLLALTGAGI 127 (321)
Q Consensus 107 ~r~~p~~~l~~~ll~~~~~~l 127 (321)
+|+++++|+++++++++++.+
T Consensus 3 ~r~r~Rl~~il~~~a~l~~a~ 23 (153)
T COG2332 3 RRRRKRLWIILAGLAGLALAV 23 (153)
T ss_pred chhhhhHHHHHHHHHHHHHHH
Confidence 445666777666665554433
No 276
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=30.74 E-value=1.2e+02 Score=26.43 Aligned_cols=79 Identities=19% Similarity=0.208 Sum_probs=49.9
Q ss_pred CeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecC--ChHHHHH
Q 020776 182 KWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTG--SPDEIRN 259 (321)
Q Consensus 182 K~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~--~~d~~~~ 259 (321)
|-+++++=.|--+.--..-.|.+.++..+++++ |..+ +-+| ..+...+..+++.++++|..-.. ..-....
T Consensus 29 kgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~-gi~v--~vvS----Nn~e~RV~~~~~~l~v~fi~~A~KP~~~~fr~ 101 (175)
T COG2179 29 KGVILDLDNTLVPWDNPDATPELRAWLAELKEA-GIKV--VVVS----NNKESRVARAAEKLGVPFIYRAKKPFGRAFRR 101 (175)
T ss_pred cEEEEeccCceecccCCCCCHHHHHHHHHHHhc-CCEE--EEEe----CCCHHHHHhhhhhcCCceeecccCccHHHHHH
Confidence 556666655443332345678999999999987 4444 4345 25678999999999988865432 1223344
Q ss_pred HHHHcCce
Q 020776 260 IARAYRVY 267 (321)
Q Consensus 260 ~a~~ygv~ 267 (321)
..+++++.
T Consensus 102 Al~~m~l~ 109 (175)
T COG2179 102 ALKEMNLP 109 (175)
T ss_pred HHHHcCCC
Confidence 44555544
No 277
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=29.63 E-value=75 Score=22.38 Aligned_cols=34 Identities=6% Similarity=0.125 Sum_probs=21.3
Q ss_pred EEEEcCCCeEEEEeC-CCCChhHHHHHHHHHHHHH
Q 020776 286 MYLMSPKMEFVKFFG-KNNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 286 ~~LID~dG~Iv~~~~-~~~~~~~l~~~l~~~L~~~ 319 (321)
-|.||++|++..... .......+.+...+.++.+
T Consensus 15 ~~~i~~~G~v~~~~i~~ssg~~~ld~~a~~av~~~ 49 (74)
T TIGR01352 15 RFTVDADGRVTSVSVLKSSGDEALDRAALEAVRKA 49 (74)
T ss_pred EEEECCCCCEEEEEEEEcCCChhHHHHHHHHHHhC
Confidence 689999999976531 1112345566666666654
No 278
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=29.63 E-value=98 Score=27.26 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHhhcc
Q 020776 112 ISWLSFLLLALTGAGIIWYYD 132 (321)
Q Consensus 112 ~~~l~~~ll~~~~~~l~~~~~ 132 (321)
+.|+.+++++++++++.|++.
T Consensus 5 ~~~~~~il~~~~l~l~~W~l~ 25 (192)
T PRK10893 5 RRWVIILLALIALVLIGWNLA 25 (192)
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 457767776666666666654
No 279
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=29.39 E-value=59 Score=27.46 Aligned_cols=37 Identities=14% Similarity=0.010 Sum_probs=24.0
Q ss_pred CCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEE
Q 020776 245 PKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFV 296 (321)
Q Consensus 245 ~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv 296 (321)
..|....++...+-...++-|+.... +|+||+.|+|.
T Consensus 119 ~~f~~~~gn~~~D~~~y~~~gi~~~~---------------i~~i~~~~~~~ 155 (157)
T smart00775 119 NPFYAGFGNRITDVISYSAVGIPPSR---------------IFTINPKGEVH 155 (157)
T ss_pred CCEEEEeCCCchhHHHHHHcCCChhh---------------EEEECCCCccc
Confidence 34433344555666667777765433 89999999875
No 280
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=29.34 E-value=1.8e+02 Score=21.83 Aligned_cols=45 Identities=11% Similarity=0.241 Sum_probs=29.2
Q ss_pred cEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCc
Q 020776 218 DIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRV 266 (321)
Q Consensus 218 ~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv 266 (321)
....|.|.-|-+.++...+..+++++++++..+. ...++.+..|.
T Consensus 27 kaklViiA~D~~~~~~~~i~~~c~~~~Vp~~~~~----s~~eLG~a~G~ 71 (82)
T PRK13602 27 SVKEVVVAEDADPRLTEKVEALANEKGVPVSKVD----SMKKLGKACGI 71 (82)
T ss_pred CeeEEEEECCCCHHHHHHHHHHHHHcCCCEEEEC----CHHHHHHHHCC
Confidence 4556666766555677778888888888886663 22445555554
No 281
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=29.06 E-value=1.2e+02 Score=25.29 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=28.0
Q ss_pred CCCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhh
Q 020776 180 LGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKE 213 (321)
Q Consensus 180 kGK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~ 213 (321)
..|.|+|-|.-.|-|. |..+=..|.++.++.++
T Consensus 19 ~drvvViRFG~d~d~~-Cm~mDeiL~~~a~~v~~ 51 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPV-CMQMDEILYKIAEKVKN 51 (133)
T ss_dssp SSSEEEEEEE-TTSHH-HHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEeCCCCCcc-HHHHHHHHHHHHHHhhc
Confidence 4799999999999996 99988888999888863
No 282
>PRK07714 hypothetical protein; Provisional
Probab=28.79 E-value=2.3e+02 Score=21.87 Aligned_cols=45 Identities=9% Similarity=0.152 Sum_probs=30.4
Q ss_pred cEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCc
Q 020776 218 DIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRV 266 (321)
Q Consensus 218 ~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv 266 (321)
.+.+|.+..|-..++.+.+..+++.+++++..+ ++ ..++...+|.
T Consensus 34 ~~~lViiA~D~s~~~~~ki~~~~~~~~vp~~~~-~s---k~eLG~a~Gk 78 (100)
T PRK07714 34 KAKLVLLSEDASVNTTKKITDKCTYYNVPMRKV-EN---RQQLGHAIGK 78 (100)
T ss_pred CceEEEEeCCCCHHHHHHHHHHHHhcCCCEEEe-CC---HHHHHHHhCC
Confidence 455666777766677888888888888887654 22 3455666664
No 283
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=27.76 E-value=1.3e+02 Score=26.24 Aligned_cols=11 Identities=36% Similarity=0.558 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 020776 118 LLLALTGAGII 128 (321)
Q Consensus 118 ~ll~~~~~~l~ 128 (321)
+++++++++++
T Consensus 27 ~llll~~~G~~ 37 (182)
T PRK08455 27 VVLLLLIVGVI 37 (182)
T ss_pred HHHHHHHHHHH
Confidence 33444443433
No 284
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=27.67 E-value=77 Score=23.74 Aligned_cols=35 Identities=9% Similarity=0.024 Sum_probs=20.2
Q ss_pred ccceEEEEEcCCCeEEEEe-CCCCChhHHHHHHHHH
Q 020776 281 DHSIVMYLMSPKMEFVKFF-GKNNDVNSLADGIIKE 315 (321)
Q Consensus 281 ~~~~~~~LID~dG~Iv~~~-~~~~~~~~l~~~l~~~ 315 (321)
.+.|.+.|+|.+|+++... ....+.+++.+.|.+.
T Consensus 40 G~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~k 75 (78)
T PF08806_consen 40 GAPPELVLLDEDGEEVERINIEKWKTDEIEEFLNEK 75 (78)
T ss_dssp S---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHh
Confidence 3667899999999987764 4566777776666543
No 285
>cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD2 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It mediates EGF-dependent insulin secretion and EGF-induced Ras activation by the guanine nucleotide-exchange factor
Probab=26.93 E-value=61 Score=26.82 Aligned_cols=24 Identities=25% Similarity=0.587 Sum_probs=19.5
Q ss_pred HhhhhhhhhhhhHHHHHHhhhccC
Q 020776 5 IVRSAKNFRNLHQRFYFHTLLTKC 28 (321)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~ 28 (321)
+-|+-++|..+|++++..+.+-+-
T Consensus 39 IkRryKhF~~LHr~L~~~k~~~~~ 62 (130)
T cd07297 39 VKKKFKHFQELHRDLYRHKVMLSF 62 (130)
T ss_pred EEehhhhHHHHHHHHHHHHHhhhc
Confidence 447788999999999998876553
No 286
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=26.50 E-value=3.6e+02 Score=25.48 Aligned_cols=33 Identities=9% Similarity=0.117 Sum_probs=18.7
Q ss_pred CcEEEEEEeeCCCCCCHHHHHHHHHHhCCCcee
Q 020776 217 IDIVPAFISVDPERDTVEQVREYVKEFHPKLIG 249 (321)
Q Consensus 217 ~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~ 249 (321)
.+.++|.|+=....++.+.++++.++.+.....
T Consensus 37 ~~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~ 69 (325)
T PRK10714 37 KEYEILLIDDGSSDNSAEMLVEAAQAPDSHIVA 69 (325)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEE
Confidence 356777665222234677777777665555443
No 287
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=26.27 E-value=1.6e+02 Score=20.29 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=19.2
Q ss_pred EEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEee
Q 020776 187 YFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISV 226 (321)
Q Consensus 187 ~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~ 226 (321)
.|+..+|+. |....-.|... +..+..+-++.
T Consensus 3 Ly~~~~s~~-~~~~~~~L~~~--------~l~~~~~~v~~ 33 (74)
T cd03051 3 LYDSPTAPN-PRRVRIFLAEK--------GIDVPLVTVDL 33 (74)
T ss_pred EEeCCCCcc-hHHHHHHHHHc--------CCCceEEEeec
Confidence 456788998 98766665544 34555554443
No 288
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=26.04 E-value=1.3e+02 Score=24.55 Aligned_cols=38 Identities=18% Similarity=0.206 Sum_probs=25.0
Q ss_pred HHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHH
Q 020776 257 IRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIK 314 (321)
Q Consensus 257 ~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~ 314 (321)
....++.+||..+|+ ++| +|+.+ .+..+.+++.+.|.+
T Consensus 125 ~~~~~~~~~i~~tPt---------------~~i--nG~~~---~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 125 DSQLARQLGITGTPT---------------FFI--NGKYV---VGPYTIEELKELIDK 162 (162)
T ss_dssp HHHHHHHHT-SSSSE---------------EEE--TTCEE---ETTTSHHHHHHHHHH
T ss_pred HHHHHHHcCCccccE---------------EEE--CCEEe---CCCCCHHHHHHHHcC
Confidence 345567889988884 555 78775 366777777776653
No 289
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=25.97 E-value=1.2e+02 Score=25.56 Aligned_cols=63 Identities=16% Similarity=0.154 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHhCCCceeec---CC------hHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCC
Q 020776 231 DTVEQVREYVKEFHPKLIGLT---GS------PDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGK 301 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~~~~~l~---~~------~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~ 301 (321)
.+.+.+.+.+++.|++..-+. .+ .......+.++|+.++| +|+| +|+ +.+.|
T Consensus 121 ~~~~vl~~~~~~~Gld~~~~~~~~~~~~~~~~~~~~~~~a~~~gv~GvP---------------~~vv--~g~--~~~~G 181 (193)
T PF01323_consen 121 SDPDVLAEIAEEAGLDPDEFDAALDSPEVKAALEEDTAEARQLGVFGVP---------------TFVV--NGK--YRFFG 181 (193)
T ss_dssp SSHHHHHHHHHHTT--HHHHHHHHTSHHHHHHHHHHHHHHHHTTCSSSS---------------EEEE--TTT--EEEES
T ss_pred CCHHHHHHHHHHcCCcHHHHHHHhcchHHHHHHHHHHHHHHHcCCcccC---------------EEEE--CCE--EEEEC
Confidence 346778888888876542211 11 12334556789999988 4666 555 33447
Q ss_pred CCChhHHHHHH
Q 020776 302 NNDVNSLADGI 312 (321)
Q Consensus 302 ~~~~~~l~~~l 312 (321)
....+.+.+.|
T Consensus 182 ~~~~~~l~~~l 192 (193)
T PF01323_consen 182 ADRLDELEDAL 192 (193)
T ss_dssp CSSHHHHHHHH
T ss_pred CCCHHHHHHHh
Confidence 77777666655
No 290
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=25.92 E-value=3.6e+02 Score=21.84 Aligned_cols=45 Identities=11% Similarity=0.110 Sum_probs=27.2
Q ss_pred EEEEEEeeCCCC-CCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCce
Q 020776 219 IVPAFISVDPER-DTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVY 267 (321)
Q Consensus 219 v~vV~IS~Dp~~-Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~ 267 (321)
+.+|.|.-|-.. +..+.+..+++++++++..+ ....++.+..|..
T Consensus 47 akLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~----~tk~eLG~a~Gk~ 92 (122)
T PRK04175 47 AKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYV----PSKKDLGKAAGLE 92 (122)
T ss_pred ccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEE----CCHHHHHHHhCCC
Confidence 444555555422 23467788889999887555 2335667777754
No 291
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=25.69 E-value=2.3e+02 Score=21.52 Aligned_cols=57 Identities=11% Similarity=0.159 Sum_probs=37.1
Q ss_pred HHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCce
Q 020776 204 LAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVY 267 (321)
Q Consensus 204 L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~ 267 (321)
+++..+.++.. ....|.|.-|.+..-...+...++++++++.++ +...++.++.|+.
T Consensus 18 ~kqt~Kai~kg---~~~~v~iA~Da~~~vv~~l~~lceek~Ip~v~V----~s~~~LGkAcgi~ 74 (84)
T PRK13600 18 LKETLKALKKD---QVTSLIIAEDVEVYLMTRVLSQINQKNIPVSFF----KSKHALGKHVGIN 74 (84)
T ss_pred HHHHHHHHhcC---CceEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE----CCHHHHHHHhCCC
Confidence 44455555432 344555665554445678888999999988777 4456678888775
No 292
>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=25.38 E-value=2.8e+02 Score=23.99 Aligned_cols=81 Identities=15% Similarity=-0.010 Sum_probs=48.5
Q ss_pred CeEEEcCCCCeeeccccCC-CeEEEE----EecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC-CCC-CHHH
Q 020776 163 PFKLINHDGKNVTEKDFLG-KWTVIY----FGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP-ERD-TVEQ 235 (321)
Q Consensus 163 ~f~l~d~~G~~vsLsd~kG-K~vLL~----FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp-~~D-t~e~ 235 (321)
..++++..--++...+++| |.|+++ .-++....+-+.++|.++++...|+++ ++.+++=|..- +.| +-+.
T Consensus 24 h~~vptf~~ip~~I~~~~~ikavVlDKDNcit~P~~~~Iwp~~l~~ie~~~~vygek---~i~v~SNsaG~~~~D~d~s~ 100 (190)
T KOG2961|consen 24 HVSVPTFRYIPWEILKRKGIKAVVLDKDNCITAPYSLAIWPPLLPSIERCKAVYGEK---DIAVFSNSAGLTEYDHDDSK 100 (190)
T ss_pred ccccCccccCCcchhhccCceEEEEcCCCeeeCCcccccCchhHHHHHHHHHHhCcc---cEEEEecCcCccccCCchHH
Confidence 4555555555555555555 666664 234444446778899999999999876 67766544322 112 2355
Q ss_pred HHHHHHHhCCC
Q 020776 236 VREYVKEFHPK 246 (321)
Q Consensus 236 l~~~~~~~~~~ 246 (321)
.+.+-++.|++
T Consensus 101 Ak~le~k~gIp 111 (190)
T KOG2961|consen 101 AKALEAKIGIP 111 (190)
T ss_pred HHHHHHhhCCc
Confidence 56666666644
No 293
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=25.27 E-value=2.2e+02 Score=21.43 Aligned_cols=57 Identities=12% Similarity=0.185 Sum_probs=37.3
Q ss_pred HHHHHHHhhhcCCcEEEEEEeeCCCCCCHHH-HHHHHHHhCCCceeecCChHHHHHHHHHcCceE
Q 020776 205 AAAVDKIKENSGIDIVPAFISVDPERDTVEQ-VREYVKEFHPKLIGLTGSPDEIRNIARAYRVYY 268 (321)
Q Consensus 205 ~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~-l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~ 268 (321)
.+..+.++.. ++.+|.+.-|-+.++... +..+++++++++..+ . ...++.+.+|...
T Consensus 21 ~~v~k~l~~~---~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~---~-s~~eLG~~~g~~~ 78 (95)
T PF01248_consen 21 KEVLKALKKG---KAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFV---P-SKEELGRACGKKR 78 (95)
T ss_dssp HHHHHHHHTT---CESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEE---S-HHHHHHHHTTSSS
T ss_pred HHHHHHHHcC---CCcEEEEcCCCChhhhcccchhheeccceeEEEE---C-CHHHHHHHHCCCC
Confidence 4455555543 455566676655566666 788999998887666 2 4467788888664
No 294
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=25.22 E-value=1.4e+02 Score=21.74 Aligned_cols=13 Identities=8% Similarity=-0.051 Sum_probs=12.3
Q ss_pred EEEEcCCCeEEEE
Q 020776 286 MYLMSPKMEFVKF 298 (321)
Q Consensus 286 ~~LID~dG~Iv~~ 298 (321)
.+|+|+||.++..
T Consensus 18 ~~l~~~dG~~i~~ 30 (91)
T PF03259_consen 18 AVLVDKDGLVIAS 30 (91)
T ss_dssp EEEEETTSEEEEE
T ss_pred EEEEcCCCCEEEE
Confidence 8999999999998
No 295
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=25.11 E-value=3.5e+02 Score=21.46 Aligned_cols=14 Identities=14% Similarity=0.313 Sum_probs=11.8
Q ss_pred HHHHHHcCceEeec
Q 020776 258 RNIARAYRVYYMKT 271 (321)
Q Consensus 258 ~~~a~~ygv~~~p~ 271 (321)
-.+.++|+|...|+
T Consensus 61 P~~F~~y~I~~VPa 74 (113)
T PF09673_consen 61 PRLFRQYNITAVPA 74 (113)
T ss_pred hhHHhhCCceEcCE
Confidence 45789999999995
No 296
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=25.09 E-value=7.1e+02 Score=24.99 Aligned_cols=60 Identities=27% Similarity=0.364 Sum_probs=36.7
Q ss_pred eEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCC-CCHHHHHHHHHHhCCCceee
Q 020776 183 WTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPER-DTVEQVREYVKEFHPKLIGL 250 (321)
Q Consensus 183 ~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~-Dt~e~l~~~~~~~~~~~~~l 250 (321)
.+++....+.|+- .-.+.++...+..+ |..+ ..|+.|+.+ ...+.++.|++..++++...
T Consensus 242 ~vI~LVGptGvGK-----TTTiaKLA~~L~~~-GkkV--glI~aDt~RiaAvEQLk~yae~lgipv~v~ 302 (436)
T PRK11889 242 QTIALIGPTGVGK-----TTTLAKMAWQFHGK-KKTV--GFITTDHSRIGTVQQLQDYVKTIGFEVIAV 302 (436)
T ss_pred cEEEEECCCCCcH-----HHHHHHHHHHHHHc-CCcE--EEEecCCcchHHHHHHHHHhhhcCCcEEec
Confidence 3455556677764 33344555555544 4344 456778754 35778888988888776544
No 297
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=24.46 E-value=1.4e+02 Score=29.49 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=15.4
Q ss_pred CCCCCCCchHHHHHHHH-HHHHHHHHhh
Q 020776 104 GKPIRGGPISWLSFLLL-ALTGAGIIWY 130 (321)
Q Consensus 104 ~~~~r~~p~~~l~~~ll-~~~~~~l~~~ 130 (321)
.+..++|.++|++++++ +++|+|++++
T Consensus 30 ~~~~~~g~~l~~~aili~la~g~g~y~~ 57 (390)
T PRK10920 30 KSKNRTGLVLSAVAIAIALAAGAGLYYH 57 (390)
T ss_pred cCCCCccHHHHHHHHHHHHHHhhHHHHH
Confidence 34456777776654444 4455566555
No 298
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=24.23 E-value=4e+02 Score=21.78 Aligned_cols=30 Identities=30% Similarity=0.521 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 198 PDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 198 ~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
-.++-.+....+.++++ |..|....++-+|
T Consensus 23 d~eL~~~a~~~~~Lk~~-gv~v~RyNL~~~P 52 (123)
T PF06953_consen 23 DPELVRFAADLDWLKEQ-GVEVERYNLAQNP 52 (123)
T ss_dssp -HHHHHHHHHHHHHHHT-T-EEEEEETTT-T
T ss_pred CHHHHHHHHHHHHHHhC-CceEEEEccccCH
Confidence 46788888888999887 7777766666554
No 299
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=24.19 E-value=1.2e+02 Score=21.33 Aligned_cols=30 Identities=23% Similarity=0.398 Sum_probs=18.8
Q ss_pred EEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEe
Q 020776 187 YFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFIS 225 (321)
Q Consensus 187 ~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS 225 (321)
.|...|||. |....-.|.+. |..+..+.++
T Consensus 3 ly~~~~~p~-~~rv~~~L~~~--------gl~~e~~~v~ 32 (71)
T cd03060 3 LYSFRRCPY-AMRARMALLLA--------GITVELREVE 32 (71)
T ss_pred EEecCCCcH-HHHHHHHHHHc--------CCCcEEEEeC
Confidence 356789998 97765555443 5566655444
No 300
>PRK10834 vancomycin high temperature exclusion protein; Provisional
Probab=24.13 E-value=5.6e+02 Score=23.47 Aligned_cols=47 Identities=9% Similarity=0.023 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCC---CCCHHHHHHHHHHhCCC
Q 020776 197 CPDELQKLAAAVDKIKENSGIDIVPAFISVDPE---RDTVEQVREYVKEFHPK 246 (321)
Q Consensus 197 C~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~---~Dt~e~l~~~~~~~~~~ 246 (321)
.......|....+-|++. .+..+-+|-|.. .+.++.|++|+.++|++
T Consensus 63 s~~l~~Rl~~A~~LYk~g---k~~~ilvSGg~~~~~~~Ea~~M~~yLi~~GVp 112 (239)
T PRK10834 63 NQYYRYRIQGAINAYNSG---KVNYLLLSGDNALQSYNEPMTMRKDLIAAGVD 112 (239)
T ss_pred CHHHHHHHHHHHHHHHhC---CCCEEEEeCCCCCCCCCHHHHHHHHHHHcCCC
Confidence 444445666666656543 222334565522 24567778888877755
No 301
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=24.03 E-value=3.9e+02 Score=27.97 Aligned_cols=23 Identities=35% Similarity=0.756 Sum_probs=19.4
Q ss_pred CCCCCCcHHHHHHHHHHHHHHhhh
Q 020776 191 THCPDICPDELQKLAAAVDKIKEN 214 (321)
Q Consensus 191 twCp~vC~~elp~L~~l~~~~~~~ 214 (321)
-.||. |-..+-.|++...+.+++
T Consensus 519 ISCPs-CGRTLfDLq~tta~Ik~~ 541 (611)
T PRK02048 519 ISCPG-CGRTLYDLQSTIARIKEA 541 (611)
T ss_pred EECCC-CCcchhhHHHHHHHHHHH
Confidence 36998 999999999988888776
No 302
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=24.00 E-value=69 Score=23.64 Aligned_cols=36 Identities=11% Similarity=0.258 Sum_probs=23.1
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
|+.|.-..|+- |......|.++.... .+.+..|+++
T Consensus 2 l~l~~k~~C~L-C~~a~~~L~~~~~~~------~~~l~~vDI~ 37 (81)
T PF05768_consen 2 LTLYTKPGCHL-CDEAKEILEEVAAEF------PFELEEVDID 37 (81)
T ss_dssp EEEEE-SSSHH-HHHHHHHHHHCCTTS------TCEEEEEETT
T ss_pred EEEEcCCCCCh-HHHHHHHHHHHHhhc------CceEEEEECC
Confidence 66778899995 998777777654322 3444555665
No 303
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=23.79 E-value=4.2e+02 Score=22.40 Aligned_cols=23 Identities=9% Similarity=-0.035 Sum_probs=11.6
Q ss_pred EEcCCCCeeec-ccc-CCCeEEEEE
Q 020776 166 LINHDGKNVTE-KDF-LGKWTVIYF 188 (321)
Q Consensus 166 l~d~~G~~vsL-sd~-kGK~vLL~F 188 (321)
+.+.+-=.++| ++- ..+++-+.+
T Consensus 61 ~~~L~~f~VNL~~~~~~~rylkv~i 85 (162)
T PRK07021 61 FFPLETFTVNLQPDDDADRVLYVGL 85 (162)
T ss_pred EEecCCEEEEcCCCCCCceEEEEEE
Confidence 34444456677 332 345655544
No 304
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=23.76 E-value=5.2e+02 Score=24.26 Aligned_cols=84 Identities=14% Similarity=0.112 Sum_probs=44.3
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHh-CCCceeecCChHHHHH
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEF-HPKLIGLTGSPDEIRN 259 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~-~~~~~~l~~~~d~~~~ 259 (321)
++++++.|.++.-.. ....++.+.+...++.++ ..++.++.+.-++ +..+.+++.+++. +.+..++ .++...
T Consensus 185 ~~~~il~~~gsr~~~-~~~~~~~l~~a~~~l~~~-~~~~~~ii~~~~~--~~~~~~~~~~~~~~~~~v~~~---~~~~~~ 257 (380)
T PRK00025 185 DARVLALLPGSRGQE-IKRLLPPFLKAAQLLQQR-YPDLRFVLPLVNP--KRREQIEEALAEYAGLEVTLL---DGQKRE 257 (380)
T ss_pred CCCEEEEECCCCHHH-HHHHHHHHHHHHHHHHHh-CCCeEEEEecCCh--hhHHHHHHHHhhcCCCCeEEE---cccHHH
Confidence 456666666554332 223356666666666443 2245655554333 2345677777766 5554444 233455
Q ss_pred HHHHcCceEeec
Q 020776 260 IARAYRVYYMKT 271 (321)
Q Consensus 260 ~a~~ygv~~~p~ 271 (321)
+...-++...+.
T Consensus 258 ~~~~aDl~v~~s 269 (380)
T PRK00025 258 AMAAADAALAAS 269 (380)
T ss_pred HHHhCCEEEECc
Confidence 566666666543
No 305
>PLN02705 beta-amylase
Probab=23.71 E-value=1.6e+02 Score=30.91 Aligned_cols=13 Identities=0% Similarity=-0.087 Sum_probs=9.3
Q ss_pred eEEEEEcCCCeEE
Q 020776 284 IVMYLMSPKMEFV 296 (321)
Q Consensus 284 ~~~~LID~dG~Iv 296 (321)
|-+|.-|+.|+.-
T Consensus 354 PDifftDr~G~rn 366 (681)
T PLN02705 354 QDIFFTDREGRRN 366 (681)
T ss_pred CCceeecCCCCcc
Confidence 4478888888764
No 306
>COG2237 Predicted membrane protein [Function unknown]
Probab=23.68 E-value=1.7e+02 Score=28.43 Aligned_cols=46 Identities=26% Similarity=0.317 Sum_probs=30.8
Q ss_pred HHHHHHHhhhcCCcEEEEEEeeCCCCC------CHHHHHHHHHHhCCCceeec
Q 020776 205 AAAVDKIKENSGIDIVPAFISVDPERD------TVEQVREYVKEFHPKLIGLT 251 (321)
Q Consensus 205 ~~l~~~~~~~~g~~v~vV~IS~Dp~~D------t~e~l~~~~~~~~~~~~~l~ 251 (321)
-++|++++++ |.++++..|+-|++-. -.+++.....+++++.-.+-
T Consensus 54 lkiydeLk~~-geDveIA~vsG~~~vgv~sd~~l~~qld~vl~~~~pd~av~V 105 (364)
T COG2237 54 LKIYDELKAK-GEDVEIAVVSGDKDVGVESDLKLSEQLDEVLSELDPDDAVVV 105 (364)
T ss_pred HHHHHHHhcc-CCceEEEEEecCCCcchhhHHHHHHHHHHHHHcCCCcEEEEe
Confidence 4689999988 7899999999876421 13445556666666654443
No 307
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=23.28 E-value=3e+02 Score=20.75 Aligned_cols=53 Identities=19% Similarity=0.076 Sum_probs=34.6
Q ss_pred CCeEEEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhC
Q 020776 181 GKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFH 244 (321)
Q Consensus 181 GK~vLL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~ 244 (321)
.+.++|+| +.++.+...-+..|..++++++++ |..+.++ +.. ..+++..+..+
T Consensus 39 ~~~vilDl--s~v~~iDssgl~~L~~l~~~~~~~-g~~l~l~--~~~------~~v~~~l~~~g 91 (100)
T cd06844 39 GKTIVIDI--SALEFMDSSGTGVLLERSRLAEAV-GGQFVLT--GIS------PAVRITLTESG 91 (100)
T ss_pred CCEEEEEC--CCCcEEcHHHHHHHHHHHHHHHHc-CCEEEEE--CCC------HHHHHHHHHhC
Confidence 46788887 566666777788899999988877 4444443 322 45555555554
No 308
>PRK00394 transcription factor; Reviewed
Probab=23.20 E-value=2.8e+02 Score=24.09 Aligned_cols=41 Identities=15% Similarity=0.187 Sum_probs=28.2
Q ss_pred cccccceEEEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHHHh
Q 020776 278 YLVDHSIVMYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQYK 320 (321)
Q Consensus 278 y~v~~~~~~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~~k 320 (321)
|-+.....+++|-..|+|+-. |.-+.+++.+.+.+.+..++
T Consensus 133 yR~~~pk~~~lIF~SGKvvit--Gaks~~~~~~a~~~i~~~l~ 173 (179)
T PRK00394 133 YRLDDPKVVVLLFGSGKLVIT--GAKSEEDAEKAVEKILEKLE 173 (179)
T ss_pred EEecCCcEEEEEEcCCEEEEE--ecCCHHHHHHHHHHHHHHHH
Confidence 444445578999999999876 55667777766666655443
No 309
>PRK12569 hypothetical protein; Provisional
Probab=22.97 E-value=4e+02 Score=24.56 Aligned_cols=75 Identities=15% Similarity=0.113 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCCC-ChhHHHHH
Q 020776 233 VEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKNN-DVNSLADG 311 (321)
Q Consensus 233 ~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~~-~~~~l~~~ 311 (321)
.+.+-+-++.+.++++++........+.++..|+.....--.+.. .++||.++-+..... ++++..+.
T Consensus 129 a~av~~ai~~~~~~l~l~~~~~s~~~~~A~~~Gl~~~~E~FADR~-----------Y~~dG~Lv~R~~~gAvd~~~~~~~ 197 (245)
T PRK12569 129 ARLLVEALARLDPLLILYCMDGSATERAARELGQPVVREFYADRD-----------YDDSGSIVFTRRVGALDPQQVAAK 197 (245)
T ss_pred HHHHHHHHHHhCCCcEEEecCCcHHHHHHHHcCCCeEEEEEecCc-----------cCCCCCEecCCCCCCCCHHHHHHH
Confidence 445555666778887777656667788999999988765211111 346899987743333 88888888
Q ss_pred HHHHHHH
Q 020776 312 IIKEIKQ 318 (321)
Q Consensus 312 l~~~L~~ 318 (321)
+.+.+++
T Consensus 198 ~~~m~~~ 204 (245)
T PRK12569 198 VLRACRE 204 (245)
T ss_pred HHHHHHc
Confidence 8777653
No 310
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=22.92 E-value=2.4e+02 Score=23.46 Aligned_cols=14 Identities=29% Similarity=0.468 Sum_probs=7.2
Q ss_pred eeeccccCCCeEEEEE
Q 020776 173 NVTEKDFLGKWTVIYF 188 (321)
Q Consensus 173 ~vsLsd~kGK~vLL~F 188 (321)
.++|++ ++++=+.|
T Consensus 56 ~vNL~~--~~ylk~~i 69 (142)
T PRK07718 56 TTNLKS--GNFIRIQF 69 (142)
T ss_pred EEEcCC--CCEEEEEE
Confidence 445554 56654444
No 311
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=22.90 E-value=36 Score=24.46 Aligned_cols=33 Identities=9% Similarity=0.205 Sum_probs=19.4
Q ss_pred EEEEcCCCeEEEEe-CCCCChhHHHHHHHHHHHH
Q 020776 286 MYLMSPKMEFVKFF-GKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 286 ~~LID~dG~Iv~~~-~~~~~~~~l~~~l~~~L~~ 318 (321)
.|.||++|++.... ........+.+.+.+.+++
T Consensus 21 ~~~I~~~G~v~~~~v~~s~~~~~l~~~a~~~v~~ 54 (79)
T PF03544_consen 21 EFTIDPDGRVSDVRVIQSSGPPILDEAALRAVKK 54 (79)
T ss_dssp EEEEETTTEEEEEEEEEESSSSCSHHHHHHHHCC
T ss_pred EEEEeCCCCEEEEEEEEccCHHHHHHHHHHHHHh
Confidence 68999999998652 1112222355555555543
No 312
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=22.86 E-value=2.1e+02 Score=24.08 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=10.3
Q ss_pred CCCCCcHHHHHHHHHH
Q 020776 192 HCPDICPDELQKLAAA 207 (321)
Q Consensus 192 wCp~vC~~elp~L~~l 207 (321)
+||+ |...-..|+..
T Consensus 15 t~~~-C~~ak~iL~~~ 29 (147)
T cd03031 15 TFED-CNNVRAILESF 29 (147)
T ss_pred cChh-HHHHHHHHHHC
Confidence 8998 97765555543
No 313
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=22.79 E-value=3.1e+02 Score=21.59 Aligned_cols=44 Identities=16% Similarity=0.230 Sum_probs=30.3
Q ss_pred cEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcC
Q 020776 218 DIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYR 265 (321)
Q Consensus 218 ~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~yg 265 (321)
.+.+|.+..|-..++.+.+.++++.+++++..+ ++. .++...+|
T Consensus 33 k~~lVI~A~D~s~~~kkki~~~~~~~~vp~~~~-~t~---~eLg~a~G 76 (104)
T PRK05583 33 KVYLIIISNDISENSKNKFKNYCNKYNIPYIEG-YSK---EELGNAIG 76 (104)
T ss_pred CceEEEEeCCCCHhHHHHHHHHHHHcCCCEEEe-cCH---HHHHHHhC
Confidence 466677787877788888888888888877555 333 34455555
No 314
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=22.76 E-value=2.5e+02 Score=27.19 Aligned_cols=54 Identities=24% Similarity=0.340 Sum_probs=34.6
Q ss_pred HHHHHHHhhhcCCcEEEEEEeeCCCCCC------HHHHHHHHHHhCCCceeecCChHHHHH
Q 020776 205 AAAVDKIKENSGIDIVPAFISVDPERDT------VEQVREYVKEFHPKLIGLTGSPDEIRN 259 (321)
Q Consensus 205 ~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt------~e~l~~~~~~~~~~~~~l~~~~d~~~~ 259 (321)
-++|++++++ |.++++..|+-+++.+- .+++.+-.++++++...+-.|..+++.
T Consensus 54 vkiydeL~~~-GedveVA~VsG~~~~~v~ad~~I~~qld~vl~~~~~~~~i~VsDGaeDE~ 113 (344)
T PF04123_consen 54 VKIYDELKAE-GEDVEVAVVSGSPDVGVEADRKIAEQLDEVLSKFDPDSAIVVSDGAEDER 113 (344)
T ss_pred HHHHHHHHhc-CCCeEEEEEECCCCCchhhHHHHHHHHHHHHHhCCCCEEEEEecChhhhh
Confidence 4678999888 88999999998765321 345556666667765544444334433
No 315
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=22.71 E-value=2.2e+02 Score=24.32 Aligned_cols=21 Identities=10% Similarity=-0.010 Sum_probs=10.3
Q ss_pred cCCCCeeeccccCC---CeEEEEE
Q 020776 168 NHDGKNVTEKDFLG---KWTVIYF 188 (321)
Q Consensus 168 d~~G~~vsLsd~kG---K~vLL~F 188 (321)
+.+.=.++|.+-.| +++=+.+
T Consensus 70 ~l~~fvVNL~~~~~~~~ryLkv~i 93 (166)
T PRK12785 70 DVPDMLVNLAGDPGERVQYLKLKV 93 (166)
T ss_pred EcCCEEEECCCCCCCcceEEEEEE
Confidence 33335566755432 5654444
No 316
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.60 E-value=45 Score=27.28 Aligned_cols=17 Identities=12% Similarity=0.475 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q 020776 114 WLSFLLLALTGAGIIWY 130 (321)
Q Consensus 114 ~l~~~ll~~~~~~l~~~ 130 (321)
|++++++++++++++++
T Consensus 2 W~l~~iii~~i~l~~~~ 18 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFL 18 (130)
T ss_pred eeeHHHHHHHHHHHHHH
Confidence 77777776655555443
No 317
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=22.44 E-value=2.4e+02 Score=23.35 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=25.2
Q ss_pred HHHHHHcCceEeecCCCCCCcccccceEEEEEcC-CCeEEEEeCCC-CChhHHHHHHHHH
Q 020776 258 RNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSP-KMEFVKFFGKN-NDVNSLADGIIKE 315 (321)
Q Consensus 258 ~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~-dG~Iv~~~~~~-~~~~~l~~~l~~~ 315 (321)
.++++.+++.. |. +++..+ +++...+. +. .+.+.+.+.|...
T Consensus 31 ~~~~~~~~~~~-p~--------------i~~~k~~~~~~~~y~-~~~~~~~~l~~fI~~~ 74 (184)
T PF13848_consen 31 EELAKKYGIKE-PT--------------IVVYKKFDEKPVVYD-GDKFTPEELKKFIKKN 74 (184)
T ss_dssp HHHHHHCTCSS-SE--------------EEEEECTTTSEEEES-SSTTSHHHHHHHHHHH
T ss_pred HHHHHHhCCCC-Cc--------------EEEeccCCCCceecc-cccCCHHHHHHHHHHh
Confidence 44677788766 54 666655 34444433 44 6777777776543
No 318
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=22.14 E-value=2.3e+02 Score=23.88 Aligned_cols=48 Identities=19% Similarity=0.386 Sum_probs=29.2
Q ss_pred ccCCCeEEE-EEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCC
Q 020776 178 DFLGKWTVI-YFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDP 228 (321)
Q Consensus 178 d~kGK~vLL-~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp 228 (321)
.|||+++++ -|.+.--.. -......|+++..++++. |++- ++.|+.|.
T Consensus 47 qfKGRv~l~P~~~Y~~~~~-~~~~~~~L~~w~~~l~~~-GFkh-V~~lT~D~ 95 (142)
T PF10673_consen 47 QFKGRVLLFPAFTYLKEED-EEELVERLNDWCEELKES-GFKH-VFYLTSDS 95 (142)
T ss_pred hcCceEEecCCeeeecccc-hhHHHHHHHHHHHHHHhc-CCcE-EEEEecCc
Confidence 578998776 333333232 223334788888888876 5544 45678774
No 319
>PF07476 MAAL_C: Methylaspartate ammonia-lyase C-terminus; InterPro: IPR022662 Methylaspartate ammonia-lyase 4.3.1.2 from EC catalyses the second step of fermentation of glutamate. It is a homodimer. This domain represents the C-terminal region of methylaspartate ammonia-lyase and contains a TIM barrel fold similar to the PF01188 from PFAM. This domain represents the catalytic domain and contains a metal binding site []. ; PDB: 1KKO_B 1KKR_A 3ZVI_A 1KD0_B 1KCZ_B 3ZVH_A.
Probab=21.73 E-value=3.1e+02 Score=25.11 Aligned_cols=49 Identities=18% Similarity=0.361 Sum_probs=35.3
Q ss_pred cHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCcee
Q 020776 197 CPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIG 249 (321)
Q Consensus 197 C~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~ 249 (321)
=..++..|.++.+.+++. |.++.+| .|++-+|.++++.|+.....++.-
T Consensus 118 r~~QI~~l~~Lr~~L~~~-g~~v~iV---ADEWCNT~eDI~~F~da~A~dmVQ 166 (248)
T PF07476_consen 118 REAQIEALAELREELDRR-GINVEIV---ADEWCNTLEDIREFADAKAADMVQ 166 (248)
T ss_dssp HHHHHHHHHHHHHHHHHC-T--EEEE---E-TT--SHHHHHHHHHTT-SSEEE
T ss_pred hHHHHHHHHHHHHHHHhc-CCCCeEE---eehhcCCHHHHHHHHhcCCcCEEE
Confidence 668899999999999887 7777766 477778999999999988765543
No 320
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=21.67 E-value=1.4e+02 Score=27.91 Aligned_cols=58 Identities=17% Similarity=0.137 Sum_probs=27.2
Q ss_pred CCeEEEcCCCCeeeccccC--CCeEEEEEecCCCCCCcHHHHHHH-HHHHHHHhhhcCCcEEEEEEeeC
Q 020776 162 GPFKLINHDGKNVTEKDFL--GKWTVIYFGFTHCPDICPDELQKL-AAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 162 p~f~l~d~~G~~vsLsd~k--GK~vLL~FwatwCp~vC~~elp~L-~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
|-|.++|.+|.++-.+.-. ++.+.+.|+ |+.+...+ +++.....+. +.++.++.|+.|
T Consensus 76 PVF~itn~~G~p~l~~~~~~~~~~v~~~F~-------s~~dA~~~L~~lk~~~p~~-~~~~kV~pvsL~ 136 (274)
T PF04278_consen 76 PVFTITNSQGEPVLVSGPDQGGKSVGLFFF-------SQQDAEAFLAQLKKSNPEL-ASGAKVVPVSLG 136 (274)
T ss_dssp EEEEEE-TT--B-----TTS--SEEEEEES--------HHHHHHHHHHHHH-SSHH-HTT-EEEEEEHH
T ss_pred eEEEEECCCCCEEEeccCCCCCceEEEEEe-------cHHHHHHHHHHHhhhCccc-cCceEEEEecHH
Confidence 4899999999998666554 566666663 66655444 3333322111 335777778863
No 321
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=21.59 E-value=88 Score=30.93 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=21.3
Q ss_pred EEEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeC
Q 020776 185 VIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVD 227 (321)
Q Consensus 185 LL~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~D 227 (321)
|+.|..+|||+ |...-..|++. |.....+ .+|
T Consensus 4 V~vys~~~Cp~-C~~aK~~L~~~--------gi~~~~i--di~ 35 (410)
T PRK12759 4 VRIYTKTNCPF-CDLAKSWFGAN--------DIPFTQI--SLD 35 (410)
T ss_pred EEEEeCCCCHH-HHHHHHHHHHC--------CCCeEEE--ECC
Confidence 56778999998 98765555543 5555544 554
No 322
>PF02563 Poly_export: Polysaccharide biosynthesis/export protein; InterPro: IPR003715 The extracellular polysaccharide colanic acid (CA) is produced by species of the family Enterobacteriaceae. In Escherichia coli (strain K12) the CA cluster comprises 19 genes. The wzx gene encodes a protein with multiple transmembrane segments that may function in export of the CA repeat unit from the cytoplasm into the periplasm in a process analogous to O-unit export. The CA gene clusters may be involved in the export of polysaccharide from the cell [].; GO: 0015159 polysaccharide transmembrane transporter activity, 0015774 polysaccharide transport, 0016020 membrane; PDB: 2W8I_E 2W8H_E 2J58_D.
Probab=21.21 E-value=1e+02 Score=22.92 Aligned_cols=34 Identities=12% Similarity=0.216 Sum_probs=22.2
Q ss_pred EEEEcCCCeEEEEe-----CCCCChhHHHHHHHHHHHHH
Q 020776 286 MYLMSPKMEFVKFF-----GKNNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 286 ~~LID~dG~Iv~~~-----~~~~~~~~l~~~l~~~L~~~ 319 (321)
.|.||++|.|..-+ ....+.+++.+.|.+.++++
T Consensus 32 ~~~V~~dG~I~lP~iG~v~v~G~T~~e~~~~I~~~l~~~ 70 (82)
T PF02563_consen 32 EYTVDPDGTISLPLIGPVKVAGLTLEEAEEEIKQRLQKY 70 (82)
T ss_dssp SEE--TTSEEEETTTEEEE-TT--HHHHHHHHHHHHTTT
T ss_pred ceEECCCCcEeecccceEEECCCCHHHHHHHHHHHHHHH
Confidence 57899999996543 45678888888888887653
No 323
>KOG2027 consensus Spindle pole body protein [Cytoskeleton]
Probab=21.02 E-value=30 Score=34.08 Aligned_cols=80 Identities=18% Similarity=0.233 Sum_probs=46.5
Q ss_pred EEEecCCCCCCcHHHHHHHHHHHHHHhhhcCCcEEEEEEeeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcC
Q 020776 186 IYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFISVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYR 265 (321)
Q Consensus 186 L~FwatwCp~vC~~elp~L~~l~~~~~~~~g~~v~vV~IS~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~yg 265 (321)
|.|-+..|. ++|.|+.+.+.|..++|.++.-.++..=|. ...-..++++..+..+.=..-..-..++++.|+
T Consensus 87 lifAA~R~~-----EvpEL~~i~~~f~~kYGk~f~~~a~~l~p~---~~Vn~kiiekLs~~~P~~e~k~k~lkEIA~ey~ 158 (388)
T KOG2027|consen 87 LIFAAPRLS-----EVPELREIRDLFVKKYGKEFVKAAIELRPG---NGVNRKIIEKLSVEAPPKELKEKYLKEIAKEYN 158 (388)
T ss_pred HHHHhcccc-----ccHHHHHHHHHHHHHHhHHHHHHHHhcccc---CCcCHHHHHHhcCCCCcHHHHHHHHHHHHHHhC
Confidence 445555554 599999998888887766654332221111 122234666665544322112345678899999
Q ss_pred ceEeecCC
Q 020776 266 VYYMKTAE 273 (321)
Q Consensus 266 v~~~p~~~ 273 (321)
|.+.+...
T Consensus 159 v~~~~~~~ 166 (388)
T KOG2027|consen 159 VNWEPDSL 166 (388)
T ss_pred CCcccCcc
Confidence 99888654
No 324
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=20.93 E-value=1.3e+02 Score=29.21 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=19.7
Q ss_pred EEEEcCCCeEEEEeCCCCChhHHHHHHHHHHHHH
Q 020776 286 MYLMSPKMEFVKFFGKNNDVNSLADGIIKEIKQY 319 (321)
Q Consensus 286 ~~LID~dG~Iv~~~~~~~~~~~l~~~l~~~L~~~ 319 (321)
-++|-.+|+++.+.. .+++.+.+.+.++++
T Consensus 327 ~~~vf~~Gk~v~kv~----~~~~~~~l~~~i~~~ 356 (360)
T PRK00366 327 KGPVFVDGEKIKTLP----EENIVEELEAEIEAY 356 (360)
T ss_pred ceEEEECCEEeeeeC----hHhHHHHHHHHHHHH
Confidence 567778999988763 445555555555544
No 325
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=20.77 E-value=1e+02 Score=24.66 Aligned_cols=21 Identities=19% Similarity=0.423 Sum_probs=8.2
Q ss_pred CCchHHHHHHHHHHHHHHHHh
Q 020776 109 GGPISWLSFLLLALTGAGIIW 129 (321)
Q Consensus 109 ~~p~~~l~~~ll~~~~~~l~~ 129 (321)
+|.++++..++++++++++.|
T Consensus 3 rr~~~~~~~v~~vv~~~~~~w 23 (112)
T PF14155_consen 3 RRKLVIAGAVLVVVAGAVVAW 23 (112)
T ss_pred cceeEehHHHHHHHHHHHHhH
Confidence 333434444433333333333
No 326
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=20.61 E-value=3.6e+02 Score=24.39 Aligned_cols=24 Identities=17% Similarity=0.304 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHhCCCceeecCCh
Q 020776 231 DTVEQVREYVKEFHPKLIGLTGSP 254 (321)
Q Consensus 231 Dt~e~l~~~~~~~~~~~~~l~~~~ 254 (321)
+..+.++++++++++.+..+..+.
T Consensus 135 EEa~~~Rne~~k~gislvpLvaPs 158 (268)
T KOG4175|consen 135 EEAETLRNEARKHGISLVPLVAPS 158 (268)
T ss_pred HHHHHHHHHHHhcCceEEEeeCCC
Confidence 446888999999999987776543
No 327
>cd08344 MhqB_like_N N-terminal domain of MhqB, a type I extradiol dioxygenase, and similar proteins. This subfamily contains the N-terminal, non-catalytic, domain of Burkholderia sp. NF100 MhqB and similar proteins. MhqB is a type I extradiol dioxygenase involved in the catabolism of methylhydroquinone, an intermediate in the degradation of fenitrothion. The purified enzyme has shown extradiol ring cleavage activity toward 3-methylcatechol. Fe2+ was suggested as a cofactor, the same as most other enzymes in the family. Burkholderia sp. NF100 MhqB is encoded on the plasmid pNF1. The type I family of extradiol dioxygenases contains two structurally homologous barrel-shaped domains at the N- and C-terminal. The active-site metal is located in the C-terminal barrel and plays an essential role in the catalytic mechanism.
Probab=20.47 E-value=3.2e+02 Score=20.65 Aligned_cols=17 Identities=6% Similarity=0.223 Sum_probs=14.1
Q ss_pred EEEEcCCCeEEEEeCCC
Q 020776 286 MYLMSPKMEFVKFFGKN 302 (321)
Q Consensus 286 ~~LID~dG~Iv~~~~~~ 302 (321)
+|+.||+|..+..+.+.
T Consensus 94 ~~~~DP~Gn~iel~~~~ 110 (112)
T cd08344 94 VWFRDPDGNLLQVKVAE 110 (112)
T ss_pred EEEECCCCCEEEEecCC
Confidence 78999999999876543
No 328
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=20.36 E-value=2.5e+02 Score=27.36 Aligned_cols=7 Identities=43% Similarity=0.325 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 020776 122 LTGAGII 128 (321)
Q Consensus 122 ~~~~~l~ 128 (321)
++|++.+
T Consensus 42 alg~~~~ 48 (372)
T PF04375_consen 42 ALGAGGW 48 (372)
T ss_pred HHHHHHH
Confidence 3333333
No 329
>PF13103 TonB_2: TonB C terminal; PDB: 1LR0_A.
Probab=20.30 E-value=2.3e+02 Score=20.57 Aligned_cols=33 Identities=9% Similarity=0.224 Sum_probs=18.3
Q ss_pred EEEEcCCCeEEEE-eCCCCChhHHHHHHHHHHHH
Q 020776 286 MYLMSPKMEFVKF-FGKNNDVNSLADGIIKEIKQ 318 (321)
Q Consensus 286 ~~LID~dG~Iv~~-~~~~~~~~~l~~~l~~~L~~ 318 (321)
.+-||++|+|+.. ....-....+-+.+++.|+.
T Consensus 31 ~i~i~~dG~v~~~~i~~sSG~~~~D~av~~ai~~ 64 (85)
T PF13103_consen 31 RITIDPDGRVISVRIVKSSGNPAFDAAVRRAIRR 64 (85)
T ss_dssp EEEE-TTSBEEEEEEEE--S-HHHHHHHHHHHHH
T ss_pred EEEECCCCCEEEEEEecCCCCHHHHHHHHHHHHH
Confidence 7889999999644 32333344555556666653
No 330
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=20.26 E-value=3.1e+02 Score=25.26 Aligned_cols=104 Identities=16% Similarity=0.143 Sum_probs=57.8
Q ss_pred cHHHHHHHHHHHHHHhhhcCCcEEEEEE--------eeCCCCCCHHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceE
Q 020776 197 CPDELQKLAAAVDKIKENSGIDIVPAFI--------SVDPERDTVEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYY 268 (321)
Q Consensus 197 C~~elp~L~~l~~~~~~~~g~~v~vV~I--------S~Dp~~Dt~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~ 268 (321)
+..++..|+.+.+.. |..+.-|-- ..|+ +..+.+-+.++.++++++++........+.++.+|+..
T Consensus 86 v~yQigaL~~~a~~~----g~~l~hVKPHGALYn~~~~d~--~lA~~i~~ai~~~~~~l~l~~~ags~~~~~A~~~Gl~~ 159 (242)
T PF03746_consen 86 VLYQIGALQAIAAAE----GVPLHHVKPHGALYNMAAKDE--ELARAIAEAIKAFDPDLPLYGLAGSELEKAAKELGLPV 159 (242)
T ss_dssp HHHHHHHHHHHHHHT----T--EEEE---HHHHHHHHH-H--HHHHHHHHHHHHH-TT-EEEEETTSHHHHHHHHCT--E
T ss_pred HHHHHHHHHHHHHHc----CCeeEEecccHHHHHHHhcCH--HHHHHHHHHHHHhCCCcEEEEcCCcHHHHHHHHCCCcE
Confidence 455566666665554 334543310 1121 34566677788888888777655567788899999988
Q ss_pred eecCCCCCCcccccceEEEEEcCCCeEEEEe-CCCC--ChhHHHHHHHHHHH
Q 020776 269 MKTAEEDSDYLVDHSIVMYLMSPKMEFVKFF-GKNN--DVNSLADGIIKEIK 317 (321)
Q Consensus 269 ~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~-~~~~--~~~~l~~~l~~~L~ 317 (321)
....-.+.. .+.||.++-+. .+.. ++++..+.+.++++
T Consensus 160 ~~E~FADR~-----------Y~~dG~Lv~R~~~gAvi~d~~~~~~q~~~~~~ 200 (242)
T PF03746_consen 160 VFEAFADRA-----------YDDDGSLVPRSQPGAVIHDPEEAAEQVLQMVK 200 (242)
T ss_dssp EEEEETTBE-----------B-TTSSBEETTSTTCB---HHHHHHHHHHHHH
T ss_pred EEEEEEccc-----------CcCCCCEeecCCCCCccCCHHHHHHHHHHHHh
Confidence 775212222 24688888763 3333 67777777777665
No 331
>PRK05406 LamB/YcsF family protein; Provisional
Probab=20.06 E-value=4.1e+02 Score=24.49 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhCCCceeecCChHHHHHHHHHcCceEeecCCCCCCcccccceEEEEEcCCCeEEEEeCCC---CChhHHH
Q 020776 233 VEQVREYVKEFHPKLIGLTGSPDEIRNIARAYRVYYMKTAEEDSDYLVDHSIVMYLMSPKMEFVKFFGKN---NDVNSLA 309 (321)
Q Consensus 233 ~e~l~~~~~~~~~~~~~l~~~~d~~~~~a~~ygv~~~p~~~~~~~y~v~~~~~~~LID~dG~Iv~~~~~~---~~~~~l~ 309 (321)
.+.+-+.++.++++++++........++++.+|+......-.+.. .++||.++-+...+ .+++++.
T Consensus 126 a~av~~ai~~~~~~l~l~~~~~s~~~~~A~~~Gl~~~~E~FADR~-----------Y~~dG~Lv~R~~~gAvi~d~~~v~ 194 (246)
T PRK05406 126 ADAVAEAVAAVDPSLILVGLAGSELIRAAEEAGLRTASEVFADRA-----------YTADGTLVPRSQPGAVIHDEEEAA 194 (246)
T ss_pred HHHHHHHHHHhCCCcEEEecCChHHHHHHHHcCCcEEEEEEecCC-----------cCCCCCCcCCCCCCCccCCHHHHH
Confidence 445555666778887777656667888999999988765211111 34688887764333 3777788
Q ss_pred HHHHHHHHH
Q 020776 310 DGIIKEIKQ 318 (321)
Q Consensus 310 ~~l~~~L~~ 318 (321)
+.+.+++++
T Consensus 195 ~~~~~~~~~ 203 (246)
T PRK05406 195 AQVLQMVQE 203 (246)
T ss_pred HHHHHHHHc
Confidence 777777653
Done!